BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023906
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 194 bits (493), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 123/169 (72%), Gaps = 5/169 (2%)
Query: 78 SLTDVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
LT VAMDCEMVG+ G +S L RVS+VN +G +YD++V+P ERV D+RT +SGIRP
Sbjct: 230 GLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRP 289
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LK 193
D++K + F VQK+V+E++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF +K
Sbjct: 290 EDVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVK 349
Query: 194 NGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVK 242
+GR +L+ L +IL V++Q GEHC + DA+AAM LY +K WE ++K
Sbjct: 350 SGRP-SLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWEVAIK 397
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 127/185 (68%), Gaps = 5/185 (2%)
Query: 78 SLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
LT VAMDCEMVG+ G +S L RVS+VN +G +YD++VRP ERV D+RT +SGIRP
Sbjct: 224 GLTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRP 283
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LK 193
D++ + F VQ +VAE++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF +K
Sbjct: 284 DDIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVK 343
Query: 194 NGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKN 253
+GR +L+ L +IL V++Q GEHC + DA+AAM LY +K WE ++K + K
Sbjct: 344 SGRP-SLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKCWEAAIKAKYAGVTAAKA 402
Query: 254 RKPKK 258
+ P+K
Sbjct: 403 KGPQK 407
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 128/174 (73%), Gaps = 5/174 (2%)
Query: 78 SLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
LT +A+DCEMVG+ +G +S RVS+VN++G +YD++V+P E V D+RT +SGIRP
Sbjct: 239 GLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRP 298
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LK 193
+L++ ++ VQK+VAE+++GRILVGHALHNDLK L L H KK +RDT +Y+PF +K
Sbjct: 299 ENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVK 358
Query: 194 NGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQTRL 247
+GR +LR L+ +IL +++Q EHC I DA+AAM LY+ +K+WE +D+ L
Sbjct: 359 SGRP-SLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARDRRPL 411
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 127/170 (74%), Gaps = 5/170 (2%)
Query: 79 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
LT +A+DCEMVG+ +G +S RVS+VN++G +YD++V+P E V D+RT +SGIRP
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKN 194
+L++ ++F V+K+VAE+++GRILVGHALHNDLK L L H KK +RDT +++PF +K+
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369
Query: 195 GRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQ 244
GR +L+ L+ +IL + +Q EHC I DA+AAM LY+ +++WE S ++
Sbjct: 370 GRP-SLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESSTANR 418
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 128/179 (71%), Gaps = 11/179 (6%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+AMDCE VG+ +G +SAL RVS+VN +G+ ++D+FV+P ERV D+RT +SG+ P+ + +
Sbjct: 100 LAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHMNE 159
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRSKA 199
A F Q + ++L+EGRILVGHA+H+DL AL L+H K +RDTS+Y+PF + G++ +
Sbjct: 160 AISFQEAQNETSKLLEGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTPS 219
Query: 200 LRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKNRKPKK 258
L+ L++ L ++IQ H ++DARA MLL+ +RK++E+S++ Q NRKP+K
Sbjct: 220 LKKLSSHFLKIDIQGSAHSSVEDARATMLLFRLHRKEFEQSIRTQ--------NRKPEK 270
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 125/175 (71%), Gaps = 6/175 (3%)
Query: 71 TPINDDFS--LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDF 127
T IN + S + +AMDCE VG+ +G +SAL R+S+VN +G+++ DEFV+P E+VV++
Sbjct: 108 TRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEW 167
Query: 128 RTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSE 187
RT +SGI+P ++ A F QKK A+++EGRILVGHAL +DL+AL+L+H K LRDTS
Sbjct: 168 RTWVSGIKPEHMKNAITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSR 227
Query: 188 YQPFLK---NGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEK 239
+ PF K G++ +L+ L E+L + IQ GEH ++DARA MLLY K + ++EK
Sbjct: 228 HLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 282
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 115/161 (71%), Gaps = 4/161 (2%)
Query: 83 VAMDCEMVGISQG--NKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
VAMDCEMVG+ N SAL RVS+VN G +YD +VRP E + D+RT +SGI P+ +
Sbjct: 117 VAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMA 176
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK--NGRSK 198
+A+ VQK VAE+++GRILVGHA+ NDL ALLL H K+D+RDTS++ P+ K G S
Sbjct: 177 EARSLEQVQKDVAEILDGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGSP 236
Query: 199 ALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEK 239
L+ LA+E L + IQ+G H ++DA+A MLLY ++++ +E+
Sbjct: 237 RLKILASEFLGLNIQDGAHSSVEDAKATMLLYRRDKEAFER 277
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 120/169 (71%), Gaps = 3/169 (1%)
Query: 73 INDDFSLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRI 131
+ + + +A+DCEMVG+ G++SAL RVS+V+ G IYD +V+P E+V ++RT +
Sbjct: 124 LTEGIEIGKYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAV 183
Query: 132 SGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF 191
SGI + +R A+DF VQ ++ +L+ GRILVGH L +DL+AL+L+H KD+RDT+++ F
Sbjct: 184 SGISQKSMRFARDFEEVQAEIDKLLRGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGF 243
Query: 192 LK--NGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWE 238
K NGR +LR LA ++L VEIQ GEH I+DARA MLL+ K++ ++
Sbjct: 244 KKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHKSAFD 292
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 121/171 (70%), Gaps = 5/171 (2%)
Query: 81 DVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
+ +A+DCEMVG+ +G++S L RVS+VN G IYD+FVRP E+V D+RT +SG+RP+DL
Sbjct: 134 NYLAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDL 193
Query: 140 RKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRS 197
+ A F VQ +VA LI+G++LVGHA+ NDLKALLL+H K +RDT+ +QP L +
Sbjct: 194 KGAPSFSQVQGEVANLIKGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLRDLAKTKY 253
Query: 198 KALRHLAAEILAVEIQ-NGE-HCPIDDARAAMLLYMKNRKQWEKSVKDQTR 246
+L+ LA +L ++IQ GE H ++DARA M ++ + +W++ ++ Q +
Sbjct: 254 PSLKKLAKLVLGIDIQLEGESHSSVEDARATMAVFRSQKPKWDEMLRSQNK 304
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 114/161 (70%), Gaps = 4/161 (2%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
V+MDCE VG+ G SAL RVS+VN +GN++ D FVRP E V D+RT +SGI+P +
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRSK 198
A QK+V+ +++GRILVGH++H+DL AL+L+H ++ +RDTS + PF G++
Sbjct: 180 AVTQEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKTP 239
Query: 199 ALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEK 239
+L+ L EIL ++IQ+GEH I+DARA MLLY ++ ++EK
Sbjct: 240 SLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEK 280
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 131/213 (61%), Gaps = 16/213 (7%)
Query: 26 KVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGSKPSPLTPINDDFSLTDVVAM 85
K + N L K +K PES+ ++ G S LT + +L +AM
Sbjct: 50 KKRMNELKKFAKENDIPESQVLDAY-------------GVDASKLTRKTNLETLGKYIAM 96
Query: 86 DCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDF 145
DCEMVG++ + S L RVS+VN G+++YD +VRP E+V D+RT +SG++ +R A F
Sbjct: 97 DCEMVGVAD-DMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSF 155
Query: 146 PTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRSKALRHL 203
VQ +VA++++ R+LVGHA+HNDLK LLL+H ++ +RDTS + + L GR+ L+ L
Sbjct: 156 EKVQAEVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKL 215
Query: 204 AAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQ 236
A IL +IQ+G+H + DA+A M LY K +K+
Sbjct: 216 AEVILGRDIQSGQHSSVQDAQATMELYKKVKKE 248
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 121/182 (66%), Gaps = 11/182 (6%)
Query: 78 SLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
S+ VAMDCE VG+ G +S L RVS+VN +G + D +VRP E+V D+RT +SGI P
Sbjct: 109 SVGKFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITP 168
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKN-- 194
+++A Q++VA +++ R+L+GH LH+DL+ L+++H K +RDTS + PF +
Sbjct: 169 AHMKQAVTLEEAQRRVAAMLKNRVLIGHGLHHDLEMLMVSHPKAQIRDTSMHGPFREKYG 228
Query: 195 -GRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKN 253
G++ +L+ LA E+L ++IQ EH ++DARAA+LLY ++ ++E RL Q++ +
Sbjct: 229 AGKTPSLKKLAREVLNIDIQGKEHSSVEDARAALLLYKSDKVEFE-------RLHQQRFS 281
Query: 254 RK 255
R+
Sbjct: 282 RR 283
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 122/186 (65%), Gaps = 6/186 (3%)
Query: 66 KPSPLTPINDDFSLT--DVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRPLE 122
KP PL+ ND L VA+DCE VGI + G +SAL R+S++N +G ++ D +VRP E
Sbjct: 99 KPLPLSR-NDSRKLDPGKYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQE 157
Query: 123 RVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDL 182
RV D+RT +SGI+ ++ A DF T Q K ELI +ILVGHA++NDL L L+H K +
Sbjct: 158 RVTDWRTWVSGIQSYHMQDAIDFKTAQLKTMELINNKILVGHAVNNDLDILFLSHPKSMI 217
Query: 183 RDTSEYQPF--LKNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKS 240
RDT ++ F + G+S +L+ L + V+IQ G+H ++DARA MLL+ +++ E+S
Sbjct: 218 RDTCKFPKFREIAGGKSPSLKKLIKHFIQVDIQIGQHSSVEDARATMLLFRLFKREIEQS 277
Query: 241 VKDQTR 246
++++ +
Sbjct: 278 MRNRNK 283
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+A+DCEMVG+ G ++ L RVS+VN G +I D FV+P E V D+RT ISG++ DL
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSK--A 199
A F V K+VA L+ +IL+GHA+ NDLK L+LTH RDT +Y+P + ++K
Sbjct: 193 APQFDEVNKQVANLLHDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRPG 252
Query: 200 LRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQT 245
L+ L+ +L V+IQ G H + DAR AM LY ++K+WE+SV QT
Sbjct: 253 LKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKEWERSVWRQT 298
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+A+DCEMVG+ G ++ L RVS+VN G +I D FV+P E V D+RT ISG++ DL
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSK--A 199
A F V K+VA L+ +IL+GHA+ NDLK L+LTH RDT +Y+P + ++K
Sbjct: 193 APQFDEVNKQVANLLHDKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRPG 252
Query: 200 LRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQT 245
L+ L+ +L V+IQ G H + DAR AM LY ++K+WE+SV QT
Sbjct: 253 LKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKEWERSVWRQT 298
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 150 bits (380), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 113/161 (70%), Gaps = 4/161 (2%)
Query: 83 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+AMDCE VG+ +G SAL RVSLVN GN++ D FV+P E V D+RT +SGI P ++
Sbjct: 96 IAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMKN 155
Query: 142 AKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRSK 198
A F Q++++++++ +ILVGHA+ +DL+AL+L+H K + DT+ + PF G+S
Sbjct: 156 AVSFKQAQQQLSDILKDKILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKGKSP 215
Query: 199 ALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEK 239
+L+ LA EIL ++IQ+G+H ++DARA ML+Y ++ ++K
Sbjct: 216 SLKKLAKEILNMDIQSGQHSSVEDARATMLIYKSAKQDFDK 256
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 78 SLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRP 136
+L +++DCEMVG G S L R S+V+ G+ IYD +VRP V D+RT +SGI
Sbjct: 212 TLGKYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISK 271
Query: 137 RDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGR 196
R + A+ F +VQ VA L++GRILVGH + +DL+ L H +D+RDT++Y F K G
Sbjct: 272 RHMASARSFESVQATVAALLKGRILVGHDVKHDLEVLGFEHPHRDIRDTAKYSGFRKYGH 331
Query: 197 S--KALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQ 251
+LR LA E+L +EI G+H ++DAR AMLL+ K + ++ +++ R E+ Q
Sbjct: 332 GPKPSLRVLAKEVLGIEIHQGQHSSVEDARVAMLLFRKEKHGFD--MENSNRYEEGQ 386
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 6/205 (2%)
Query: 38 HTKNPESETHNSILGKRKERLEAESDGSKPSPLTPINDDFSLTD--VVAMDCEMVGIS-Q 94
H +P T +IL LE E+ + P P+ P+ + +A+DCE VG+
Sbjct: 88 HKNDPTRPTLGAILQSDDAGLE-EALHAPPQPIEPVLARWKCAPGKFIALDCEFVGVGPN 146
Query: 95 GNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAE 154
G +S L RVS+VN +G+++ DE+V+P+ERV D+RT +SG+ P + F Q++V
Sbjct: 147 GARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVTPAMVANGISFSEAQERVKR 206
Query: 155 LIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRSKALRHLAAEILAVEI 212
L+ GR L+GHAL NDL L L H + D+RDT + Q F + ++ +L+H+ E + + I
Sbjct: 207 LLNGRTLIGHALINDLAVLGLDHPRADIRDTQKPQYFKTVCGCKTPSLKHVMKECVDLNI 266
Query: 213 QNGEHCPIDDARAAMLLYMKNRKQW 237
Q GEH + DA+AAMLL+ +K++
Sbjct: 267 QQGEHSSVIDAQAAMLLFRCYKKEF 291
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 19/205 (9%)
Query: 52 GKRKERLEAESDGSK------PSPLTPINDDFSLTDVVAMDCEMVGIS-QGNKSALGRVS 104
G RK+R +A S GSK P P + S VA+DCEMVG QG S L R S
Sbjct: 72 GNRKQRTKARS-GSKGLCSKRPVPREAPSSGPS--KYVAIDCEMVGTGPQGRVSELARCS 128
Query: 105 LVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGH 164
+V+ G+++YD+++RP +VD+RTR SGI + + KA F QK++ +L++G+++VGH
Sbjct: 129 VVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKAIPFQVAQKEILKLLKGKVVVGH 188
Query: 165 ALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSK------ALRHLAAEILAVEIQNGE-- 216
ALHND +AL H +RDT+ Y P L + S +L+ LA +L +IQ G
Sbjct: 189 ALHNDFQALKYVHPGSQIRDTT-YVPNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHG 247
Query: 217 HCPIDDARAAMLLYMKNRKQWEKSV 241
H ++DA AM LY QWE+ V
Sbjct: 248 HSSVEDAMTAMELYQLVEVQWEQQV 272
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 10/167 (5%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G S+L R S+VN G+++YDE++RP +VD+RTR SGIR +
Sbjct: 195 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHMV 254
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK------N 194
A F T + ++ +++ G+++VGHA+HND KAL H K RDTS+ P L
Sbjct: 255 NATPFKTARSQILKILSGKVVVGHAIHNDYKALQYFHPKSLTRDTSQI-PLLNRKADCPE 313
Query: 195 GRSKALRHLAAEILAVEIQNG--EHCPIDDARAAMLLYMKNRKQWEK 239
+ +L+HL ++L+ +IQ G H ++DA+A + LY +WE+
Sbjct: 314 NVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLELYKLVEVEWEQ 360
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 80 TDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRD 138
+ VA+DCEMVG +G S L R S+V+ GN++YD+++RP + D+RTR SGI +
Sbjct: 108 SKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQH 167
Query: 139 LRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK----N 194
+RKA F QK++ +L++G+++VGHALHND +AL H + RDT+ FL +
Sbjct: 168 MRKAVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLH 227
Query: 195 GRSK-ALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEK 239
R++ +L+ LA ++L +IQ G+ H ++DA AM LY QWE+
Sbjct: 228 TRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQ 275
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 8/166 (4%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G+ S+L R S+VN G+++YDE++ P +VD+RTR SGIR + +
Sbjct: 179 MVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 238
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF-----LKNG 195
A F + ++ +++ G+I+VGHA+HND KAL H K RDTS P
Sbjct: 239 NATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPEN 298
Query: 196 RSKALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEK 239
+ +L+HL ++L +IQ G+ H ++DA+A M LY +WE+
Sbjct: 299 ATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEE 344
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 10/169 (5%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
VA+DCEMVG QG S L R S+V+ G+++YD+++RP +VD+RTR SGI + +
Sbjct: 109 CVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 168
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSK-- 198
KA F QK++ +L++G+++VGHALHND +AL H + RDT+ Y P L + S
Sbjct: 169 KAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTT-YVPNLLSQPSSLI 227
Query: 199 ----ALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEKSV 241
+L+ LA +L +IQ G H ++DA AM LY QWE+ V
Sbjct: 228 RTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMELYQLVEVQWEQQV 276
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 8/166 (4%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
VA+DCEMVG +G S L R S+V+ G+++YD+++RP +VD+RTR SGI + +
Sbjct: 110 CVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHMC 169
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNG----R 196
KA F QK++ +L++G+++VGHALHND +AL H + RDT+ FL R
Sbjct: 170 KAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPSLHIR 229
Query: 197 SK-ALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEK 239
++ +L+ LA ++L +IQ G+ H ++DA AM LY QWE+
Sbjct: 230 ARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQ 275
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 10/167 (5%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G+ S+L R S+VN G+++YDE++ P +VD+RTR SGIR + +
Sbjct: 175 MVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHMV 234
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK------N 194
A F + ++ +++ G+I+VGHA+HND KAL H K RDTS + P L
Sbjct: 235 NATPFKIARNQILKILAGKIVVGHAIHNDFKALQYIHPKSLTRDTS-HIPLLNRKADCPE 293
Query: 195 GRSKALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEK 239
+ +L+ L ++L +IQ G+ H ++DA+A M LY +WE+
Sbjct: 294 NATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMELYKLVEVEWEQ 340
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 10/167 (5%)
Query: 82 VVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VA+DCEMVG +G S+L R S+VN G+++YDE+V P +V++RTR SGIR +
Sbjct: 194 MVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHMV 253
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK------N 194
A F T + ++ +++ G++++GHA+HND KAL H K RDTS P L
Sbjct: 254 NATPFKTARSQILKILSGKVVIGHAIHNDYKALQYFHPKSLTRDTSRI-PLLNRKADCPE 312
Query: 195 GRSKALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEK 239
+ +L+HL ++L+ +IQ G H ++DA+A M LY +WE+
Sbjct: 313 NVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMELYKLVEVEWEQ 359
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VVAMDCEMVG+ +S L R SLVN G ++YD+F+RP + D+RTR+SG+ P+ +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF-----LKNG 195
A F + ++ +L++G+++VGH L +D +AL S + DTS + L +
Sbjct: 66 GATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHC 125
Query: 196 RSKALRHLAAEILAVEIQNG--EHCPIDDARAAMLLY 230
R +LR L+ +L IQN H ++DARA M LY
Sbjct: 126 RRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY 162
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+VVAMDCEMVG+ +S L R SLVN G ++YD+F++P + D+RTR+SG+ P+ +
Sbjct: 6 EVVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMV 65
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF-----LKNG 195
A F + ++ +L++G+++VGH L +D +AL ++ + DTS L +
Sbjct: 66 GATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLDHC 125
Query: 196 RSKALRHLAAEILAVEIQNG--EHCPIDDARAAMLLY 230
R +LR L +L IQN H ++DA+A M LY
Sbjct: 126 RRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMELY 162
>sp|Q54U94|REXO4_DICDI RNA exonuclease 4 OS=Dictyostelium discoideum GN=rexo4 PE=3 SV=1
Length = 298
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 101/166 (60%), Gaps = 4/166 (2%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGI-RPRDLR 140
++DC+++ I +GNK LG+V + N+ G +IY++ V+P++++VDFRT+ +G+ R + R
Sbjct: 125 FFSIDCKIIEI-EGNKGTLGKVCIANQNGQIIYEKIVKPMDKIVDFRTKFTGLTRDKVQR 183
Query: 141 KAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK--NGRSK 198
+ DF VQK+V +++ +ILVGH L +DLK L L H KK LRD +++ F
Sbjct: 184 EGTDFLQVQKEVEKILRHKILVGHDLVHDLKNLKLAHKKKLLRDATQFTKFFNPDTNSED 243
Query: 199 ALRHLAAEILAVEIQNGEHCPIDDARAAMLLYMKNRKQWEKSVKDQ 244
+L+ +A L N + D ++LY +N+K+WE + ++
Sbjct: 244 SLKSIAKRELNFSPDNWDPNGKRDTIINVILYKQNQKEWEAFINNK 289
>sp|Q9JL16|ISG20_MOUSE Interferon-stimulated gene 20 kDa protein OS=Mus musculus GN=Isg20
PE=1 SV=1
Length = 300
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 71/109 (65%)
Query: 78 SLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPR 137
+ +VVAMDCEMVG+ S L R S+VN G ++YD+++RP + D+RT++SG+ P+
Sbjct: 3 GIPEVVAMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQ 62
Query: 138 DLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTS 186
+ +A F + ++ +L++G+++VGH L +D AL SK + DTS
Sbjct: 63 HMVRATPFGEARLEILQLLKGKLVVGHDLKHDFNALKEDMSKYTIYDTS 111
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 12/153 (7%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRD 138
T+V+A+DCEM S G + L R+++V W N +++DE V+PL ++D T+ SG+ D
Sbjct: 221 TNVLALDCEMAYTSCGYE--LIRLTVVEFWTNAVLFDEIVQPLGEIIDLNTQFSGVHEID 278
Query: 139 LRKAKDFPTVQKKV---AELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNG 195
AK F ++ A + E IL+GH L NDL L + H K + DT+ P NG
Sbjct: 279 RAVAKTFEEAREVFLSPAMINENSILIGHGLENDLNVLRIIHDK--IIDTAILYP---NG 333
Query: 196 RSK-ALRHLAAEILAVEIQNGEHCPIDDARAAM 227
+ K +LR+LA + L+ IQ GEH +DA AAM
Sbjct: 334 KFKSSLRNLAFQELSRRIQTGEHDSSEDAIAAM 366
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 12/152 (7%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRDL 139
+V+A+DCEM + G + + R+++V+ + + +YDE +RP+ V+D T+ SG+R D+
Sbjct: 238 NVLALDCEMGFTTMGYE--MVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDI 295
Query: 140 RKAKDFPTVQKKV--AELIE-GRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGR 196
AKD+ V + V A++I IL+GH L NDL + L H++ + DT+ GR
Sbjct: 296 LYAKDYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTR--ILDTA---IMYSVGR 350
Query: 197 SK-ALRHLAAEILAVEIQNGEHCPIDDARAAM 227
K +L++L+ EIL+ +IQ GEH DA AAM
Sbjct: 351 FKNSLKNLSFEILSRKIQLGEHDSSQDAIAAM 382
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
T ++++DCEMV G++ AL RV V++ ++ D+FV+P + V+D++T I+G+ DL
Sbjct: 143 TRMLSIDCEMVTCEDGSQ-ALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDL 201
Query: 140 RKAK-DFPTVQKKVAELIE-GRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRS 197
+A +QKK+ + G ILVGH LHNDL+ L + H++ + DTS F+ ++
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHAR--VIDTSYVFEFVDAPKT 259
Query: 198 K--ALRHLAAEILAVEIQ--NGEHCPIDDARAAMLLYM 231
+ +L +L +L E++ H + DA AAM L +
Sbjct: 260 QRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVL 297
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 16/180 (8%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM + G + L RV++V+ ++YD FV+P +VD+ TR SG+ D+ K
Sbjct: 409 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAK 466
Query: 142 AK-DFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTSEYQP-FLKNGRSK 198
P VQ + + IL+GH+L +DL AL L HS + DT+ P +L +
Sbjct: 467 TSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHS--TVVDTAVLFPHYLGFPYKR 524
Query: 199 ALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKNRKP 256
+LR+LAA+ LA IQ+ + H +DA A + L M W+ V+ + +++ + ++ P
Sbjct: 525 SLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVM-----WK--VRQRAQIQPRHRSASP 577
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 16/180 (8%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM + G + L RV++V+ ++YD FV+P +VD+ TR SG+ D+ K
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAK 558
Query: 142 AK-DFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTSEYQP-FLKNGRSK 198
P VQ + + IL+GH+L +DL AL L HS + DT+ P +L +
Sbjct: 559 TSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHS--TVVDTAVLFPHYLGFPYKR 616
Query: 199 ALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKNRKP 256
+LR+LAA+ LA IQ+ + H +DA A + L M W+ V+ + +++ + ++ P
Sbjct: 617 SLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVM-----WK--VRQRAQIQPRHRSASP 669
>sp|Q754X1|PAN2_ASHGO PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAN2 PE=3 SV=2
Length = 1162
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 53 KRKERLEAESDGSKPSPLTPINDDF-SLT-DVVAMDCEMV-GISQGNKSALGRVSLVNKW 109
K++ RL + KP L ++ +F +L+ D V + C+ + + K+AL RVS++
Sbjct: 938 KKEYRLLTAEEAPKPGSLVALDAEFVALSEDQVEISCKGTKTLIKPAKTALARVSVLRGE 997
Query: 110 GNL----IYDEFVRPLERVVDFRTRISGIRPRDL---RKAKDFPT---VQKKVAELIE-G 158
G+L D+++ + + D+ T+ SGI P DL +K T V +K+ L++ G
Sbjct: 998 GDLAGVPFIDDYIVNTKHIEDYLTKYSGIEPGDLDPDTSSKPLVTRRVVLRKIWLLLQLG 1057
Query: 159 RILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSKALRHLAAEILAVEIQNGEHC 218
I VGH L+ND + + + K+ RDT+ Y +L+ R +LR+LA +L +IQ G H
Sbjct: 1058 CIFVGHGLYNDFRNINIHVPKEQTRDTALY--YLQGRRYLSLRYLAYALLDKDIQKGNHD 1115
Query: 219 PIDDARAAMLLYMKNRKQWEKSV 241
I+DA A++LY K EK +
Sbjct: 1116 SIEDAYTALVLYRKYLDLREKGI 1138
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM QG L R+SLVN +IY+E V+P +VD+ TR SGI L
Sbjct: 225 IFALDCEMCLSEQG--LVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTV 282
Query: 142 A--KDFPTVQKKVAELIE-GRILVGHALHNDLKALLLTHSKKDLRDTS-EYQPFLKNGRS 197
K VQK + ++I IL+GH+L NDLK + L H + DT+ Y +
Sbjct: 283 GAKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPL--VVDTAIIYHHKAGDPFK 340
Query: 198 KALRHLAAEILAVEIQNGEHCPIDDARAAMLL 229
+L++L+ L IQNGEH ++DARA + L
Sbjct: 341 PSLKYLSETFLNKSIQNGEHDSVEDARACLEL 372
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLRK 141
+ A+DCEM + G + L RV++V+ ++YD FV+P +VD+ TR SG+ D+ K
Sbjct: 407 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAK 464
Query: 142 AK-DFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTSEYQP-FLKNGRSK 198
P VQ + + IL+GH+L +DL AL L HS + DT+ P +L +
Sbjct: 465 TSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHS--TVLDTAVLFPHYLGFPYKR 522
Query: 199 ALRHLAAEILAVEIQNGE--HCPIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKNRKP 256
+LR+LAA+ L IQ+ + H +DA A + L M W+ V+ + +++ + ++ P
Sbjct: 523 SLRNLAADYLGQIIQDSQDGHNSSEDANACLQLVM-----WK--VRQRAQIQPRHRSASP 575
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 14/162 (8%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR 140
+++A+DCEMV G++ A+ RV+ V++ +I DEFV+P + VVD+RT I+G+ +DL
Sbjct: 141 EMIAIDCEMVLCEDGSE-AVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLE 199
Query: 141 KAK-DFPTVQKKVAELI-EGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSK 198
KA +Q+K+ I E ILVG +L++DLK L + H++ + DTS + +G +
Sbjct: 200 KATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHAR--VIDTSLVFKYNYDGTRR 257
Query: 199 ALR-------HLAAEILAVEIQ--NGEHCPIDDARAAMLLYM 231
LR +L IL E+Q H + DA AAM L +
Sbjct: 258 PLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVL 299
>sp|Q6CMN5|PAN2_KLULA PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAN2 PE=3
SV=1
Length = 1144
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 16/202 (7%)
Query: 54 RKERLEAESDGSKPSPLTPINDDF-SLTD-VVAMDCE-MVGISQGNKSALGRVSLVNKWG 110
R+ RL + + P L ++ +F SLT+ + ++C+ M + + K +L RVSL+ G
Sbjct: 922 RQYRLLTKDEAPGPGTLVALDAEFVSLTEPYLEINCKGMKTLLKPAKKSLARVSLLRGEG 981
Query: 111 NL----IYDEFVRPLERVVDFRTRISGIRPRDLR-KAKDFPTVQKKVAE------LIEGR 159
L D+++ + D+ T+ SGI P DL K V+++V L G
Sbjct: 982 ELEGVPFIDDYIINECHIEDYLTQFSGIEPGDLDPKLSKKSLVKRQVFYRKMWLLLQLGC 1041
Query: 160 ILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSKALRHLAAEILAVEIQNGEHCP 219
+ VGH L ND + + + + +RDTS Y +LK R +LR+LA +L ++Q G H
Sbjct: 1042 VFVGHGLTNDFRQINIYVPESQIRDTSLY--YLKGKRYLSLRYLAFAVLRKQVQTGNHDS 1099
Query: 220 IDDARAAMLLYMKNRKQWEKSV 241
I+DA A+LLY K + EK V
Sbjct: 1100 IEDAHTALLLYRKYLELKEKGV 1121
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 19/155 (12%)
Query: 81 DVVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRDL 139
+V+A+DCEM S+G + + R+++V+ W + ++YD+ ++PL ++D ++ SGI D
Sbjct: 319 NVLALDCEMAFTSKGYE--MIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHHID- 375
Query: 140 RKAKDFPTVQKKVAELI------EGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK 193
PT+ + I + IL+GH L NDL+ + + H K + DT+ P
Sbjct: 376 ---DTAPTIHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDK--VIDTAVLYP--- 427
Query: 194 NGRSKA-LRHLAAEILAVEIQNGEHCPIDDARAAM 227
G+ K+ L++L+ EIL+ IQ GEH +DA AAM
Sbjct: 428 AGKYKSSLKNLSFEILSRRIQGGEHDSSEDAIAAM 462
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
T VVA+DCEM+ S G + L RV+ ++ G D VRP R++D+ TR SGI D+
Sbjct: 595 TSVVAVDCEMLYTSLGME--LCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGI--SDI 650
Query: 140 RK-----------AKDFPTVQKKVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTSE 187
+ + F + + +LI + ILVGH L NDL A+ L H + + DTS
Sbjct: 651 NEPIITESGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDR--IIDTSI 708
Query: 188 YQPFLKNGRSKALRHLAAEILAVEIQNGEHCPIDDARAAM 227
P AL+ LA + L IQ GEH ++DA AA+
Sbjct: 709 LYPDFNPRYKTALKTLALKYLKRTIQTGEHDSMEDALAAL 748
>sp|P53010|PAN2_YEAST PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAN2 PE=1 SV=1
Length = 1115
Score = 82.0 bits (201), Expect = 4e-15, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 17/205 (8%)
Query: 52 GKRKERLEAESDGSKPSPLTPINDDF-SL-TDVVAMDCEMV-GISQGNKSALGRVSLVNK 108
+R+ +L + K L I+ +F SL +++ +D + + I + ++AL R+S++
Sbjct: 888 ARREYKLLTHDEAPKSGTLVAIDAEFVSLQSELCEIDHQGIRSIIRPKRTALARISIIRG 947
Query: 109 -----WGNLIYDEFVRPLERVVDFRTRISGIRPRDLRKAKDFP------TVQKKVAELIE 157
+G D++V + D+ TR SGI P DL K V +KV L++
Sbjct: 948 EEGELYGVPFVDDYVVNTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVVYRKVWLLMQ 1007
Query: 158 -GRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSKALRHLAAEILAVEIQNGE 216
G + VGH L+ND K + + + +RDT+ Y FL+ R +LR+LA +L + IQ G
Sbjct: 1008 LGCVFVGHGLNNDFKHININVPRNQIRDTAIY--FLQGKRYLSLRYLAYVLLGMNIQEGN 1065
Query: 217 HCPIDDARAAMLLYMKNRKQWEKSV 241
H I+DA A++LY K EK++
Sbjct: 1066 HDSIEDAHTALILYKKYLHLKEKAI 1090
>sp|Q6FS70|PAN2_CANGA PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAN2 PE=3 SV=1
Length = 1093
Score = 80.5 bits (197), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 16/225 (7%)
Query: 53 KRKERLEAESDGSKPSPLTPINDDFSLTDVVAMDCEMVG---ISQGNKSALGRVSLV--- 106
+++ L ++ +P L I+ +F D + G + Q SAL R+S+V
Sbjct: 870 QKEYELLTRNEAPRPGSLIAIDAEFVTLKNEKYDIDCRGAKTVVQSKVSALARISVVRGN 929
Query: 107 -NKWGNLIYDEFVRPLERVVDFRTRISGIRPRDLR-KAKDFPTVQKKVAE-----LIE-G 158
++G D+++ + + D+ T+ SGI P DL K + V + VA L++ G
Sbjct: 930 EEQFGVPFIDDYIIIEKNIDDYLTKFSGILPGDLDPKTSNKHLVPRNVAYRKIWLLMQLG 989
Query: 159 RILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSKALRHLAAEILAVEIQNGEHC 218
+GH L ND K + ++ K+ +RDT+ Y FL+ R +LR+LA +L + +Q G H
Sbjct: 990 CTFIGHGLQNDFKHINISVPKEQIRDTAVY--FLQGKRYLSLRYLAYVLLDINVQEGNHD 1047
Query: 219 PIDDARAAMLLYMKNRKQWEKSVKDQTRLEQKQKNRKPKKKPKLK 263
I+DA A++LY K + + DQ + ++ R K LK
Sbjct: 1048 SIEDAYTALVLYKKYLELKSNGMMDQVLNKLYEEGRTTNYKVPLK 1092
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 9/158 (5%)
Query: 80 TDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL 139
T++VA+DCEMV G + L RV +V++ +I DEFV+P + VVD+RT I+GI D+
Sbjct: 138 TNMVAVDCEMVLCEDGTE-GLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDI 196
Query: 140 RKAK-DFPTVQKKVAELIE-GRILVGHALHNDLKALLLTHSKKDLRDTSEY--QPFLKNG 195
A +Q+ + + G ILVGH+L+ DL+ L + H K + DT+ P +
Sbjct: 197 ENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPK--VIDTALVFKYPNTRKL 254
Query: 196 RSKALRHLAAEILAVEIQNG--EHCPIDDARAAMLLYM 231
R +L +L IL E++ H + DA AAM L +
Sbjct: 255 RRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLAL 292
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 16/154 (10%)
Query: 82 VVAMDCEMVGISQGNKSALGRVSLVNKWGN-LIYDEFVRPLERVVDFRTRISGIRPRDLR 140
V+ +DCEM ++G + L R++ ++ + + + D F++P+ +VDF TR SGI
Sbjct: 241 VLGIDCEMGFTTKGFE--LMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGIH----E 294
Query: 141 KAKDFPTVQK---KVAELIEGR-ILVGHALHNDLKALLLTHSKKDLRDTSEYQPF-LKNG 195
DF + ++ K+ E+++ IL+GH L ND+ A+ L H +++ DTS P K G
Sbjct: 295 LTDDFLSWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIH--ENIIDTSILFPNKWKTG 352
Query: 196 --RSKALRHLAAEILAVEIQNGEHCPIDDARAAM 227
R +L+ LA E L+ IQ GEH +D+ AA+
Sbjct: 353 PTRRWSLKDLAFEFLSRRIQTGEHDSCEDSIAAI 386
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 52 GKRKERLEAESDGSKPSPLTPINDDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGN 111
G E+LE PS P ++VA+DCEM +G + L RV+LV+ G
Sbjct: 192 GYTFEKLELTPTLPAPSGSCP-------PEIVALDCEMCITKEGLE--LTRVTLVDIQGQ 242
Query: 112 LIYDEFVRPLERVVDFRTRISGIRPRDLRKAKD-FPTVQKKVAELI-EGRILVGHALHND 169
++ D+ V P + D+ TR SGI + +Q++ +L+ + ILVGH+L ND
Sbjct: 243 VLLDKLVMPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLEND 302
Query: 170 LKALLLTHSKKDLRDTSEY--QPFLKNGRSKALRHLAAEILAVEIQNGE--HCPIDDARA 225
L +L ++H+ + DT+ P ++ ++K LR LA + LA EIQ E H +DA+A
Sbjct: 303 LLSLKISHNL--VIDTAVLYKHPHGRSYKTK-LRILAKKFLAREIQESESGHDSAEDAKA 359
Query: 226 AM 227
AM
Sbjct: 360 AM 361
>sp|Q12090|REXO3_YEAST RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX3 PE=1 SV=1
Length = 404
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 22/181 (12%)
Query: 57 RLEAESDGSKPSPLTPINDDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKW-GNLIYD 115
R E+ + K S + +D + +V+++DCEM S G + + R+++V+ + G ++D
Sbjct: 218 RGESYDELCKISKFSSTDDIDGVENVLSLDCEMAFTSLGYE--MIRLTIVDFFTGKTLFD 275
Query: 116 EFVRPLERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELI------EGRILVGHALHND 169
++P+ +VD + SG+ D + PT ++ + + + IL+GH L ND
Sbjct: 276 HVIQPIGDIVDLNSDFSGVHEID---RTNCPTYKEALDVFLSENLINKNSILIGHGLEND 332
Query: 170 LKALLLTHSKKDLRDTSEYQPFLKNGRSK---ALRHLAAEILAVEIQNGEHCPIDDARAA 226
L + L H+K + DT+ + R+K +L++LA E+L+ +IQNGEH DA A
Sbjct: 333 LNVMRLFHNK--VIDTA-----ILYSRTKFKVSLKNLAFEVLSRKIQNGEHDSSQDAIAT 385
Query: 227 M 227
M
Sbjct: 386 M 386
>sp|A5E1W0|PAN2_LODEL PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAN2 PE=3
SV=1
Length = 1234
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 109 WGNLIYDEFVRPLERVVDFRTRISGIRPRDL---RKAKDFPTVQ---KKVAELIE-GRIL 161
+G D+++ + D+ T SGI P DL + +K+ T+Q +K+ L+ G I
Sbjct: 1071 FGEAFIDDYIVHKSHIYDYTTNFSGIEPNDLDIHKSSKNLVTLQTAYRKLWLLLNLGVIF 1130
Query: 162 VGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSKALRHLAAEILAVEIQNGEHCPID 221
VGH L+ D + + L ++ +RDT+++ R +L+ LA +L +Q G H I+
Sbjct: 1131 VGHGLYTDFRTINLQVPEEQIRDTADFYYKSSFKRQLSLKFLAYVMLKERVQKGNHDSIE 1190
Query: 222 DARAAMLLYMKNRKQWEKSVKDQTRL---EQKQKNRKPKKKPKL 262
DAR A+LLY K + +KS + ++ ++ NR + P+L
Sbjct: 1191 DARTALLLYKKYVELNQKSTNEFEKMLNFVYEEGNRLKYRVPEL 1234
>sp|Q6C462|PAN2_YARLI PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PAN2
PE=3 SV=2
Length = 1008
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 99 ALGRVSLVNKWGNLIYDEFVRPLERVVDFRTRISGIRPRDL------RKAKDFPTVQKKV 152
L RV+L+N+ G+ ++++ E +VD+ T SGI P DL + PT +++
Sbjct: 838 CLARVTLLNEDGHPFINDYIAINEHIVDYLTAFSGIEPGDLDPSISRKPLVSLPTSYRRL 897
Query: 153 AELIE-GRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLKNGRSKALRHLAAEILAVE 211
L+ G + VGH L ND + + + + + DT + R +LR LA +L +
Sbjct: 898 WLLLNLGCVFVGHGLANDFRTINMQVPPEQVIDTVDLYYIPSERRKLSLRFLAWCVLGKK 957
Query: 212 IQNGEHCPIDDARAAMLLYMK 232
+Q+G H +D+ A+LLY K
Sbjct: 958 VQSGNHDSTEDSHTALLLYKK 978
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,794,344
Number of Sequences: 539616
Number of extensions: 4008721
Number of successful extensions: 11942
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 11686
Number of HSP's gapped (non-prelim): 162
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)