Your job contains 1 sequence.
>023907
MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR
EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND
QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH
RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ
KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023907
(275 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 848 1.0e-84 1
TAIR|locus:2037593 - symbol:AT1G78910 species:3702 "Arabi... 666 2.0e-65 1
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 240 5.7e-32 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 255 1.9e-26 2
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 216 4.1e-20 2
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 233 1.7e-19 1
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 210 2.1e-19 2
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 221 6.4e-18 1
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 205 4.2e-16 1
UNIPROTKB|Q5E9Z1 - symbol:RPUSD4 "RNA pseudouridylate syn... 204 5.3e-16 1
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 203 6.9e-16 1
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 192 6.1e-14 1
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 130 2.5e-13 2
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 184 1.9e-12 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 157 5.5e-10 2
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 162 7.0e-10 1
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 116 7.4e-10 2
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 157 3.0e-09 1
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 159 4.0e-09 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 151 1.7e-08 1
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 148 3.4e-08 1
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 98 9.7e-08 2
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 144 1.2e-07 1
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 141 2.4e-07 1
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 139 4.0e-07 1
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 138 5.4e-07 1
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 138 5.4e-07 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 129 7.0e-07 2
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 137 7.5e-07 1
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 106 9.0e-07 2
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 135 1.1e-06 1
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 135 1.2e-06 1
UNIPROTKB|E1C0L7 - symbol:RPUSD1 "Uncharacterized protein... 131 2.1e-06 1
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 126 5.1e-06 1
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 126 5.1e-06 1
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 129 7.1e-06 1
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 129 7.1e-06 1
UNIPROTKB|P0AA41 - symbol:truC species:83333 "Escherichia... 124 1.5e-05 1
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 124 2.5e-05 1
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 124 2.5e-05 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 120 3.0e-05 1
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 120 3.9e-05 1
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 120 3.9e-05 1
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 119 5.0e-05 1
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 119 5.0e-05 1
UNIPROTKB|H3BSG4 - symbol:RPUSD1 "RNA pseudouridylate syn... 113 5.4e-05 1
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 117 5.7e-05 1
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 121 7.1e-05 1
UNIPROTKB|H3BMZ6 - symbol:RPUSD1 "RNA pseudouridylate syn... 113 7.7e-05 1
UNIPROTKB|H3BQN8 - symbol:RPUSD1 "RNA pseudouridylate syn... 113 8.2e-05 1
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 92 0.00011 2
UNIPROTKB|J9NWF9 - symbol:RPUSD3 "Uncharacterized protein... 119 0.00012 1
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 118 0.00013 1
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 113 0.00016 2
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 92 0.00017 2
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 116 0.00018 1
TIGR_CMR|CPS_0536 - symbol:CPS_0536 "RNA pseudouridine sy... 119 0.00025 1
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 115 0.00028 1
TIGR_CMR|CJE_0022 - symbol:CJE_0022 "RNA pseudouridine sy... 92 0.00035 2
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 110 0.00042 1
TAIR|locus:2824464 - symbol:AT1G56345 species:3702 "Arabi... 86 0.00052 2
MGI|MGI:2141440 - symbol:Rpusd3 "RNA pseudouridylate synt... 113 0.00054 1
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 93 0.00091 2
ASPGD|ASPL0000068180 - symbol:AN10936 species:162425 "Eme... 95 0.00096 2
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 167/275 (60%), Positives = 210/275 (76%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI+ SIDELAA+CL +D SE PRLVHRLDRD SG+LV+ RTQT+ATVLHSIFR
Sbjct: 201 LAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFR 260
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT AS + L+R Y ALV+G P +G ISAPL KVVVD+GKS+RITV +N
Sbjct: 261 EKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNG 320
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+++S QHA+T Y+VI+ S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H
Sbjct: 321 ELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 380
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ + F +S ++N K+ + FGLDL+ G + KQP LHLH K++ LPN+SQ ++
Sbjct: 381 KAREPF----VSSENNPT--KQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLE 434
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
K+Q+SS D+S L++LK APLPSHMQ S+++L S
Sbjct: 435 KMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>TAIR|locus:2037593 [details] [associations]
symbol:AT1G78910 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0003723 EMBL:AC005679
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
EMBL:AK176219 EMBL:BT015880 EMBL:BT020453 IPI:IPI00517933
IPI:IPI00929952 PIR:F96818 RefSeq:NP_178012.2 UniGene:At.45151
UniGene:At.50046 ProteinModelPortal:Q5XET6 SMR:Q5XET6 STRING:Q5XET6
PRIDE:Q5XET6 EnsemblPlants:AT1G78910.1 GeneID:844229
KEGG:ath:AT1G78910 TAIR:At1g78910 HOGENOM:HOG000242909
InParanoid:Q5XET6 OMA:LNKPPKV PhylomeDB:Q5XET6
ProtClustDB:CLSN2680811 Genevestigator:Q5XET6 Uniprot:Q5XET6
Length = 478
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 128/282 (45%), Positives = 193/282 (68%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + I S+D LAA L++ E PRLVHRLDR++SG+LVMGRT+ S LHS+F
Sbjct: 197 LPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFS 256
Query: 61 E-KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ K ++S + + + + YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ +
Sbjct: 257 DYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQG 316
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
++Q A+T Y+V+ P +G +W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 317 SGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFV 376
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H++WKQ D+ + + P + GLD++ GS+L K P LHLHC+EM LPN+++ +
Sbjct: 377 HKRWKQMPQVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFL 434
Query: 240 -----QKVQ-LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
Q+ + L +G + K + L+ VA +PSHM+ SW++++S
Sbjct: 435 HVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 475
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 240 (89.5 bits), Expect = 5.7e-32, Sum P(2) = 5.7e-32
Identities = 55/123 (44%), Positives = 77/123 (62%)
Query: 58 IFREK-TFSASK---EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 113
+FREK F+ +K E+N+N + +++ YWAL+ TP +G I APL KVVV +
Sbjct: 535 LFREKEVFNNNKNKDEENENYSKGIKKTYWALLGSTPTPKEGRIRAPLKKVVVGGFEKVV 594
Query: 114 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 173
T+ D A+ A+T Y+V++ S + ++ L P TGR HQLRVHCA VL TPI+GD
Sbjct: 595 PTLTTGD---GAKIAITEYKVLESSLTKHCFISLWPETGRTHQLRVHCASVLNTPIIGDP 651
Query: 174 KYG 176
KYG
Sbjct: 652 KYG 654
Score = 146 (56.5 bits), Expect = 5.7e-32, Sum P(2) = 5.7e-32
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + +D + + L ++ E P+LVHRLDR++SGIL++GR++ +A+ + F
Sbjct: 446 LSVQGGTGLNKHLDMMLSH-LRFEKDENPKLVHRLDRNTSGILILGRSKLAASAMTKKFE 504
Query: 61 EKTFSASKEDNDN 73
K +K+D D+
Sbjct: 505 LKLVKENKKDKDD 517
Score = 37 (18.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 90 PRCSKGV-ISAPLGKVVVDNGKS 111
P +K + ISAPL + +V N K+
Sbjct: 684 PFTNKKIDISAPLPRELVQNWKT 706
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 255 (94.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 68/181 (37%), Positives = 98/181 (54%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D L+ L + E PRLVHRLD+D+SG+LV+ RT+ +A L + FR
Sbjct: 109 LAVQGGSGQTRHVDGLSEA-LRFGNDENPRLVHRLDKDTSGVLVLARTREAAARLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
+ N ++I YWALV G P G I L K G+ +++ VV+
Sbjct: 168 HR----------NTRKI----YWALVAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVH 213
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++ + A+ A T Y + +W+ + P+TGR HQLR H A + G PI+GD KY
Sbjct: 214 LSELDATPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGI-GHPIIGDGKY 272
Query: 176 G 176
G
Sbjct: 273 G 273
Score = 58 (25.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 251 SKLETLKLVAPLPSHMQRSWD 271
S + + APLP HM+ SWD
Sbjct: 309 STRKKVTFTAPLPEHMRESWD 329
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 216 (81.1 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 73/249 (29%), Positives = 123/249 (49%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+FR + EK+ YWA+ V P S GV+ P+ K V + ++T+
Sbjct: 175 LFRTRQV---------EKK-----YWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTL 220
Query: 117 -----VNNDQIMSAQ-----H-AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ + H AVT+YQV+ S ++L P+TG KHQLRVH A L
Sbjct: 221 RPSYRMDNGKMVKVRASRDAHVAVTQYQVLS-STPSSALVELQPVTGIKHQLRVHLAFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSILEKQPRL 223
PI+GD+KY W + P LS + +++ + K + L L + ++ P L
Sbjct: 280 DCPILGDHKYS-----DWNRLAPQKLSAGTLKKLGLQQSKARYIPLHLHARQLI--LPAL 332
Query: 224 HLHCKEMTL 232
+E+ L
Sbjct: 333 GSRTEELLL 341
Score = 44 (20.5 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 223 LHLHCKEMTLPNVSQAIQKVQLS 245
LHLH +++ LP + +++ L+
Sbjct: 320 LHLHARQLILPALGSRTEELLLA 342
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 233 (87.1 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 70/232 (30%), Positives = 125/232 (53%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ R + +A +
Sbjct: 104 LPVHGGPGVKNCIADVLPILAKMLVNMKAEPLHLCHRLDKETTGVMVLARNKEAADRIRL 163
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
+F KT R +++ YWA+ VG+P ++G++ P+ + V + + ++T+
Sbjct: 164 LF--KT------------RQVEKIYWAISVGSPDPAEGIVEIPMVEREVQSHQPHFKMTL 209
Query: 117 VNNDQIM-------------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
N ++ +A+ AVT+Y+V+ S + L+L P+TG KHQLRVH A
Sbjct: 210 APNYRMSPEDGKVLKIRKNRNAESAVTQYRVLASSS-ACSLLELQPITGVKHQLRVHLAY 268
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE--EIPKEKTLHFGLDLES 213
LG PI+GD+KY +H W + P L + + + ++ + K+ H L L +
Sbjct: 269 GLGCPILGDHKY---SH--WSKLAPQKLPEITLKRLKLQQSKSRHLPLHLHA 315
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 210 (79.0 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 71/249 (28%), Positives = 123/249 (49%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
+FR + EK+ YWA+ V P S GV+ P+ + V + ++T+
Sbjct: 175 LFRTRQV---------EKK-----YWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTL 220
Query: 117 -----VNNDQIMSAQ-----H-AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ + H AVT+YQV+ S ++L P+TG KHQLRVH + L
Sbjct: 221 SPSYRLDNGKMVKVRASRDAHVAVTQYQVLS-SASSSALVELQPVTGIKHQLRVHLSFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSILEKQPRL 223
PI+GD+KY W + P LS + +++ + K + L L + ++ P L
Sbjct: 280 DCPILGDHKYS-----DWTRLAPQKLSAGTLKKLGLQQSKARYIPLHLHARQLI--LPAL 332
Query: 224 HLHCKEMTL 232
+E+ L
Sbjct: 333 GSRTEELLL 341
Score = 44 (20.5 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 223 LHLHCKEMTLPNVSQAIQKVQLS 245
LHLH +++ LP + +++ L+
Sbjct: 320 LHLHARQLILPALGSRTEELLLT 342
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 221 (82.9 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 74/250 (29%), Positives = 124/250 (49%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 114 LPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 173
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+FR T +K+ YWA+ V P S GV+ P+ K V + ++T+
Sbjct: 174 LFR--TRQVAKK------------YWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTL 219
Query: 117 -----VNNDQIM------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ +A AVT+YQV+ + L+L P+TG KHQLRVH + L
Sbjct: 220 CPSYRMDNGKMVRVRTSRNAHLAVTQYQVLSSTLSS-ALLELQPVTGIKHQLRVHLSFGL 278
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSIL-----E 218
PI+GD+KY W + P LS +++ P+ K H L L + ++
Sbjct: 279 DCPILGDHKYS-----DWNRLAPQKLSVGVLKKLGLPQSKARHIPLHLHARQLILPALQS 333
Query: 219 KQPRLHLHCK 228
++ L+L CK
Sbjct: 334 RKEELNLVCK 343
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 205 (77.2 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 70/250 (28%), Positives = 122/250 (48%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 116 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 175
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
FR T +K+ YWA+ V P S GV+ P+ + V + ++T+
Sbjct: 176 FFR--TRQVAKK------------YWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTL 221
Query: 117 -----VNNDQIM------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ +A AVT+Y V+ + ++L P+TG KHQLRVH + L
Sbjct: 222 SPDYRMDNGKMVRVRSNRNAHIAVTQYHVLSSTLSS-ALVELQPITGIKHQLRVHLSFGL 280
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTL--HFGLDLESGSIL-----E 218
PI+GD+KY W + P LS + +++ ++T H L L + ++
Sbjct: 281 NCPILGDHKYS-----DWNKLAPQKLSLGTLKKLGLQQTKARHLPLHLHARQLILPALGS 335
Query: 219 KQPRLHLHCK 228
++ L L CK
Sbjct: 336 RKEELSLVCK 345
>UNIPROTKB|Q5E9Z1 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 GeneTree:ENSGT00530000063800 EMBL:BT020717
EMBL:BT020773 EMBL:BT020778 EMBL:BT021642 EMBL:BT021761
EMBL:BT025340 EMBL:BT025483 EMBL:BT026244 EMBL:BC134590
IPI:IPI00713333 RefSeq:NP_001015616.1 UniGene:Bt.31431
ProteinModelPortal:Q5E9Z1 Ensembl:ENSBTAT00000027843 GeneID:516934
KEGG:bta:516934 CTD:84881 HOVERGEN:HBG054698 InParanoid:Q5E9Z1
NextBio:20872338 Uniprot:Q5E9Z1
Length = 377
Score = 204 (76.9 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 74/249 (29%), Positives = 117/249 (46%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL------G-----KVVV 106
+FR T +K+ YWA+ V P GV+ P+ G K+ +
Sbjct: 175 LFR--TRQVTKK------------YWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 107 DNG-KSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
+ D +V +AQ AVT+YQV+ S L+L P+TG KHQLRVH + L
Sbjct: 221 SPSYRMDDGKMVRVRSSRNAQLAVTQYQVLSSSLSA-ALLELQPITGIKHQLRVHMSFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSILEKQPRL 223
PI+GD+KY W + P LS +++ + K H L L + + P L
Sbjct: 280 DCPILGDHKYS-----DWNRLAPQKLSAGILKKLGLQQSKARHLPLHLHACQLT--LPAL 332
Query: 224 HLHCKEMTL 232
+E+TL
Sbjct: 333 QPQKEELTL 341
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 203 (76.5 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 69/250 (27%), Positives = 125/250 (50%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+FR + +++++ YWA+ V P S GV+ P+ K + ++T+
Sbjct: 175 LFRTR-------------QVVKK-YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 117 -----VNNDQIM------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
+++ +++ +AQ AVT+YQV+ + ++L P+TG KHQLRVH + L
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKE--KTLHFGLDLESGSIL-----E 218
PI+GD+KY W + P LS + +++ E K + L L + ++
Sbjct: 280 DCPILGDHKYS-----DWNRLAPQKLSVGTLKKLGLEQSKARYIPLHLHARQLILPALGS 334
Query: 219 KQPRLHLHCK 228
+ L+L CK
Sbjct: 335 GKEELNLVCK 344
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 192 (72.6 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 59/193 (30%), Positives = 99/193 (51%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 116 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 175
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
FR T +K+ YWA+ V P S GV+ P+ + V + ++T+
Sbjct: 176 FFR--TRQVAKK------------YWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTL 221
Query: 117 -----VNNDQIM------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ +A AVT+Y V+ + ++L P+TG KHQLRVH + L
Sbjct: 222 SPDYRMDNGKMVRVRSNRNAHIAVTQYHVLSSTLSS-ALVELQPITGIKHQLRVHLSFGL 280
Query: 166 GTPIVGDYKYG-W 177
PI+GD+KY W
Sbjct: 281 NCPILGDHKYSDW 293
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 130 (50.8 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 38/111 (34%), Positives = 58/111 (52%)
Query: 125 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 184
AQ AVT+YQV+ + ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 209 AQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 262
Query: 185 QFHPSDLSKDSNEEIPKE--KTLHFGLDLESGSIL-----EKQPRLHLHCK 228
+ P LS + +++ E K + L L + ++ + L+L CK
Sbjct: 263 RLAPQKLSVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCK 313
Score = 108 (43.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 29/104 (27%), Positives = 54/104 (51%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL 101
+FR + +++++ YWA+ V P S GV+ P+
Sbjct: 175 LFRTR-------------QVVKK-YWAITVHVPMPSAGVVDIPI 204
Score = 44 (20.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 223 LHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 289 LHLHARQLILPALGSGKEELNL 310
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 184 (69.8 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 71/237 (29%), Positives = 118/237 (49%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPP---RLVHRLDRDSSGILVMGRTQTSATVLH 56
+P+ GIR SI E L D P L H+L+++++G+L++ +T+ +A +
Sbjct: 107 VPLHNINGIRNSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQ 166
Query: 57 SIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRIT 115
++ + + K ++ Y A+ VG P S+GVI P + + VV ++
Sbjct: 167 TLIQ------------SHK--VEMKYLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMA 212
Query: 116 V-----VNND-----QIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA 162
+ VN D ++ + A AVTRYQV+ + G + ++L PLTG K+QLRVH A
Sbjct: 213 LSPLFKVNEDGDGVTRVRAHRQAHAAVTRYQVLD-NTSGCSLVELQPLTGVKNQLRVHMA 271
Query: 163 EVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIP--KEKTLHFGLDLESGSIL 217
L PI+GD+KY +H W + P L + + + + KT + L L S I+
Sbjct: 272 LALTCPILGDHKY---SH--WSKLAPQKLPEGTLRRLGLVQSKTRYLPLHLHSRRIV 323
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 157 (60.3 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
EK+ + R YW +V G + +G+I P+G+ D K + VV+N + +AQ T Y+
Sbjct: 165 EKKAV-REYWTIVHGYLKNKEGIIDLPIGRHPRDRQK---MAVVSNGK--TAQ---TVYK 215
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
V++ G+T ++ LTGR HQ+RVH + LG P++GD KYG Q +
Sbjct: 216 VLEEFNKGFTLIQAKLLTGRTHQIRVHFS-YLGHPVLGDPKYGHQNN 261
Score = 40 (19.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 254 ETLKLVAPLPSHMQR 268
E L+ APLP QR
Sbjct: 284 ELLEFTAPLPEDFQR 298
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 162 (62.1 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 41/116 (35%), Positives = 67/116 (57%)
Query: 62 KTFSASKED-NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KT A++E R++++ Y A+V+G + KGV+ + KV+ K + + NN
Sbjct: 150 KTLDAARELWRLFSNRLVKKSYLAIVIGELKEKKGVVDCYINKVLF---KGEEVMQCNN- 205
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
I + +HA+T++ VIK + ++L PLTGRKHQ+R A + G P++ D KYG
Sbjct: 206 -IGNGEHAITQFHVIK-KFKNTSLIELFPLTGRKHQIRSQMASI-GHPVLNDGKYG 258
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 36/133 (27%), Positives = 65/133 (48%)
Query: 2 PVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
PVQ G GI SID A + +Y R+VHRLD+ ++G+L+ +T +A L +F
Sbjct: 110 PVQSGYGITASIDN-AMKSINPEY----RVVHRLDKHTTGVLIFAKTLDAARELWRLF-- 162
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
R++++ Y A+V+G + KGV+ + KV+ + + + N +
Sbjct: 163 ------------SNRLVKKSYLAIVIGELKEKKGVVDCYINKVLFKGEEVMQCNNIGNGE 210
Query: 122 IMSAQ-HAVTRYQ 133
Q H + +++
Sbjct: 211 HAITQFHVIKKFK 223
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 116 (45.9 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
+++++++ Y LV G + + + PL K + +G +R+ V + + AVT ++
Sbjct: 163 QRKVIKQ-YLLLVKGQWQGGECRVEVPLKKNRLQSG--ERMVKVEKE----GKSAVTVFR 215
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+K + ++ PLTGR HQ+RVH A LG PI GD KYG
Sbjct: 216 PLK-IFEQASLIEAKPLTGRTHQIRVHAAH-LGYPIAGDEKYG 256
Score = 89 (36.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV GG GI+ + E A + LVHRLDR++SG L++ + +++ LH++
Sbjct: 105 LPVHGGSGIQGGVIE--ALRIMRPKVRLLELVHRLDRETSGCLMVAKKRSTLVALHTLLT 162
Query: 61 EK 62
++
Sbjct: 163 QR 164
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 157 (60.3 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 37 RDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGV 96
RD + ++ R + + + R S +R+ ++ Y AL G P+ G
Sbjct: 129 RDGESMKIVHRLDKDTSGILMLARNARISRLIMHEFKNRRV-EKKYLALTQGIPKNDIGQ 187
Query: 97 ISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 156
I+ ++ N +S + VN+ + Q AVT + V+K +G L+L P+TGRKHQ
Sbjct: 188 INHS----IIKNKRSLSLDKVNDSYL---QEAVTSFSVLKKLPYGIGLLELKPITGRKHQ 240
Query: 157 LRVHCAEVLGTPIVGDYKYG 176
+R+H + + G I+GD KYG
Sbjct: 241 IRIHLSHI-GCSIIGDKKYG 259
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 159 (61.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 49/164 (29%), Positives = 82/164 (50%)
Query: 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 73
+E+ + +Y S P +VHRLD+ ++G+LV+ + + S L F+ T
Sbjct: 212 EEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT---------- 261
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
++R Y +L G P +G I P+G+ + + + + A+HA +RY+
Sbjct: 262 ----IERVYVSLTTGVPSPPQGRIEIPIGRD--SSNRIRMAAIPGGVRGGRARHAASRYK 315
Query: 134 VIKPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 176
VI+ G + L L TGR HQ+R H A+ +G P++GD YG
Sbjct: 316 VIETFAGGGSALVEWRLETGRTHQIRAH-AKYMGVPLLGDEVYG 358
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 151 (58.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 53/181 (29%), Positives = 87/181 (48%)
Query: 9 IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
+R ELA Y + R H+LD +SG L + + +A + F+++
Sbjct: 44 LRHRFPELADPDTCYGF----RFCHQLDFSTSGALCVALNKAAAGSAYRCFKDR------ 93
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
R+ + Y ALV G + S+ IS +GK + G++ + + + + +
Sbjct: 94 -------RVTKA-YLALVRGHIQESRVTISYAIGKNSTE-GRTHTMCIEGTQGCENPKPS 144
Query: 129 VTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+T V++ +G + + L PLTGR HQLRVHC+ LG PIVGD YG + R+ +
Sbjct: 145 LTELVVLEHGLYGGDPVSKVLLQPLTGRTHQLRVHCS-ALGHPIVGDLTYGQASGREDQP 203
Query: 186 F 186
F
Sbjct: 204 F 204
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 148 (57.2 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 43/120 (35%), Positives = 66/120 (55%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
++R ++++Y LV G ++G I APLG+ D +I VV+N + A T Y+
Sbjct: 160 KERTVRKYYLTLVQGELHPAEGFIEAPLGR---DPQNRQKIAVVSN-----GRPARTGYK 211
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF-HPSDLS 192
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF H LS
Sbjct: 212 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKETWLKRQFLHAHRLS 269
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 98 (39.6 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
E++ ++ Y AL+ G P I L D +SD+ T++ + +HA T Y
Sbjct: 166 EEKKFRKEYLALIWGVPTTKHCFIQTNL-----DVKRSDK-TMMEVT-LSRGKHANTEYI 218
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ K + + + TGR HQ+RVH + + G +VGD KYG
Sbjct: 219 IEKTFGNVASLARCILHTGRTHQIRVHMSHI-GHSVVGDQKYG 260
Score = 90 (36.7 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 64
S P ++HRLD+D+SG++V+ +T+ + VL EK F
Sbjct: 132 SHRPGIIHRLDKDTSGLMVIAKTEKAYLVLSQALEEKKF 170
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 144 (55.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 43/112 (38%), Positives = 59/112 (52%)
Query: 65 SASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS 124
S S++ +D+ ++R Y ALV G+PR KG I +G+ D K +
Sbjct: 160 SLSRQFHDHT---VKRVYLALVYGSPREDKGRIEGAIGRHPTDRKKM-------SGAARH 209
Query: 125 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+HAVT ++V G T L+L TGR HQ+RVH AE G P+VGD YG
Sbjct: 210 GKHAVTHWRVAARFT-GVTLLRLRLETGRTHQIRVHMAEA-GFPLVGDEVYG 259
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 50/171 (29%), Positives = 81/171 (47%)
Query: 9 IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
+R ELA Y + R H+LD +SG L + + +A + F+++
Sbjct: 44 LRHRFPELADPDTYYGF----RFCHQLDFSTSGALCVALNKAAAGSAYRCFKDR------ 93
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
R+ + Y ALV G + S+ IS +GK + G++ + + + + +
Sbjct: 94 -------RVTKA-YLALVRGHVQESRMTISYAIGKNSTE-GRTHTMCIEGTQGCENPKPS 144
Query: 129 VTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+T V++ + + + L PLTGR HQLRVHC+ LG PIVGD YG
Sbjct: 145 LTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 139 (54.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 70 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 129
+N KR + + Y AL+ G G+I+ PLG + G +++ + Q A
Sbjct: 153 NNSLRKRQINKIYLALIEGPLADKSGIINLPLGLL---EG-----SIIKRAVVPGGQPAC 204
Query: 130 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
T+YQ +K + +T LK+ LTGR HQ+R H A + G P+ GD YG
Sbjct: 205 TKYQTVK-AFPTHTLLKVELLTGRTHQIRAHFAAI-GHPLAGDDLYG 249
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 138 (53.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 49/171 (28%), Positives = 81/171 (47%)
Query: 9 IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
+R ELA Y + R H+LD +SG L + + +A + F+E+
Sbjct: 44 LRHHFPELADPDTCYGF----RFCHQLDFSTSGALCVALNKAAAGSAYKCFKER------ 93
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
R+ + Y ALV G + S+ I+ +G+ + G++ + + + + +
Sbjct: 94 -------RVTKA-YLALVRGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPS 144
Query: 129 VTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+T V++ + + + L PLTGR HQLRVHC+ LG PIVGD YG
Sbjct: 145 LTELLVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 138 (53.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 49/171 (28%), Positives = 81/171 (47%)
Query: 9 IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
+R ELA Y + R H+LD +SG L + + +A + F+E+
Sbjct: 44 LRHHFPELADPDTCYGF----RFCHQLDFSTSGALCVALNKAAAGSAYKCFKER------ 93
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
R+ + Y ALV G + S+ I+ +G+ + G++ + + + + +
Sbjct: 94 -------RVTKA-YLALVRGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPS 144
Query: 129 VTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+T V++ + + + L PLTGR HQLRVHC+ LG PIVGD YG
Sbjct: 145 LTELLVLEHGLYSGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 129 (50.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 44/127 (34%), Positives = 62/127 (48%)
Query: 50 TSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 109
TS ++ R S+E E R+ ++ YWALV G P + AP+ KV G
Sbjct: 137 TSGVMIFPASRRAAAHISRELK--EGRV-EKVYWALVAGMPLADSWQVDAPVAKV----G 189
Query: 110 KSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 169
S R V + A A+T ++V+ +G T ++ P TGR HQ+RVH A G I
Sbjct: 190 TS-RYGVA---PVGKA--ALTEFRVVARG-NGATLVEARPRTGRTHQIRVHLAHG-GLSI 241
Query: 170 VGDYKYG 176
+GD YG
Sbjct: 242 IGDTTYG 248
Score = 104 (41.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 85
+EP R++HRLDR +SG+++ ++ +A H I RE E R+ ++ YWAL
Sbjct: 124 AEPARVIHRLDRGTSGVMIFPASRRAAA--H-ISREL----------KEGRV-EKVYWAL 169
Query: 86 VVGTPRCSKGVISAPLGKV 104
V G P + AP+ KV
Sbjct: 170 VAGMPLADSWQVDAPVAKV 188
Score = 44 (20.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 221 PRLHLHCKEMT 231
PR+ LHC+ MT
Sbjct: 253 PRMMLHCRTMT 263
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 50/181 (27%), Positives = 87/181 (48%)
Query: 9 IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
+R ELA Y + R H+LD +SG L + + +A + F+E+
Sbjct: 44 LRYRFPELADPDTCYGF----RFCHQLDFSTSGALCVALNKAAAGSAYRCFKER------ 93
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
R+ + Y AL+ G + S+ IS +G+ + G++ + + + + + +
Sbjct: 94 -------RVTKA-YLALLRGHIQESRVTISHAIGRNSTE-GRAHTMCIEGSQGCENPKPS 144
Query: 129 VTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+T V++ + + + L PLTGR HQLRVHC+ LG P+VGD YG + R+ +
Sbjct: 145 LTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRP 203
Query: 186 F 186
F
Sbjct: 204 F 204
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 106 (42.4 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 33/102 (32%), Positives = 50/102 (49%)
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
K+ +++ Y A+V G P I + V N K +TV + + A+T YQ
Sbjct: 180 KKQIKKEYLAVVWGLPNPKSNTIKNYI--CVKPNNKQ-MMTVTHLPH--KGKLAITEYQT 234
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
K + + +K TGR HQ+RVH + + G I+GD KYG
Sbjct: 235 QKSFSNIASLIKCRIHTGRTHQIRVHMSYI-GNSIIGDQKYG 275
Score = 72 (30.4 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
P ++HRLD+D+SG++V+ + + S L + +K
Sbjct: 148 PGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKK 181
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/153 (29%), Positives = 71/153 (46%)
Query: 30 RLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGT 89
R H+LD +SG L + + +A + F+++ R+ + Y ALV GT
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGQAYRCFKDR-------------RVTKA-YLALVRGT 106
Query: 90 PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG---YTWLK 146
+ +GK + GK+ + + + + T V++ + T +
Sbjct: 107 VTEENLSLDFAIGKNTTE-GKTHMMCTEGTEGCENPKPCQTEVTVLEYGTYDGDQVTKVL 165
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
L PLTGR HQLRVHC+ + G PIVGDY Y +T
Sbjct: 166 LQPLTGRTHQLRVHCSAI-GHPIVGDYTYSLRT 197
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 48/181 (26%), Positives = 86/181 (47%)
Query: 9 IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
+R ELA Y + R H+LD +SG L + + +A + F+E+
Sbjct: 44 LRHHFPELADPDTYYGF----RFCHQLDFSTSGALCVALNKAAAGSAYKCFKER------ 93
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
R+ + Y ALV G + S+ I+ +G+ + G++ + + + + + +
Sbjct: 94 -------RVTKA-YLALVRGHVQESRMTINYAIGRNSTE-GRAHTMCIEGTEGCENPKPS 144
Query: 129 VTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+T V++ + + + L PLTGR HQLRVHC+ L P+VGD YG + ++ +
Sbjct: 145 LTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCS-ALSHPVVGDLTYGQASDQEDQP 203
Query: 186 F 186
F
Sbjct: 204 F 204
>UNIPROTKB|E1C0L7 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
OMA:MMLHAHL EMBL:AADN02023681 EMBL:AADN02023682 IPI:IPI00585704
Ensembl:ENSGALT00000008518 Uniprot:E1C0L7
Length = 254
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 45/162 (27%), Positives = 75/162 (46%)
Query: 24 DYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYW 83
D ++P H L +SG L + +A + F++ R++ + Y
Sbjct: 54 DLADPDTFQHLLGFSTSGALCFALNKAAAGSAYKCFKD--------------RLVTKAYL 99
Query: 84 ALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG-- 141
ALV G S+ I +GK V+ G + + + + + + + V++ +
Sbjct: 100 ALVRGHVDQSRMTIRYAIGKNTVE-GMTHMMCIEGTEGCENPKPCQSELIVLEHGSYSGD 158
Query: 142 -YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
T + L PLTGR HQLRVHC+ + G PIVGD+ Y +H+K
Sbjct: 159 PVTKVLLQPLTGRTHQLRVHCSAI-GHPIVGDFTY---SHKK 196
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 50/158 (31%), Positives = 74/158 (46%)
Query: 39 SSGILVMGRTQTSATVLHSIFREKTFSASKE-DNDNEKRILQRWYWALVVGTPRCSKGVI 97
+ G+ + R S + L +F T A+K+ R +Q+ Y AL+ G ++G I
Sbjct: 59 AEGVFALHRLDMSTSGL-LVFA-LTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEI 116
Query: 98 SAPL-GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 156
PL G + D+ ++ + A+T ++ ++ T + L P TGR HQ
Sbjct: 117 QLPLCGDL--DDRPRQKVCW------QQGKPALTHWETVQVE-QNRTRVYLYPHTGRTHQ 167
Query: 157 LRVHCAEVLG--TPIVGDYKYGWQTHRKWKQFHPSDLS 192
LRVHCA LG PIVGD YG Q R + H LS
Sbjct: 168 LRVHCAHHLGLNAPIVGDDLYGLQDKRLF--LHAEQLS 203
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 50/158 (31%), Positives = 74/158 (46%)
Query: 39 SSGILVMGRTQTSATVLHSIFREKTFSASKE-DNDNEKRILQRWYWALVVGTPRCSKGVI 97
+ G+ + R S + L +F T A+K+ R +Q+ Y AL+ G ++G I
Sbjct: 59 AEGVFALHRLDMSTSGL-LVFA-LTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEI 116
Query: 98 SAPL-GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 156
PL G + D+ ++ + A+T ++ ++ T + L P TGR HQ
Sbjct: 117 QLPLCGDL--DDRPRQKVCW------QQGKPALTHWETVQVE-QNRTRVYLYPHTGRTHQ 167
Query: 157 LRVHCAEVLG--TPIVGDYKYGWQTHRKWKQFHPSDLS 192
LRVHCA LG PIVGD YG Q R + H LS
Sbjct: 168 LRVHCAHHLGLNAPIVGDDLYGLQDKRLF--LHAEQLS 203
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 129 (50.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 38/103 (36%), Positives = 58/103 (56%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
+KR + R Y A+V+GT G+I P+G+ S + T+++ + +HAVT Y+
Sbjct: 163 QKRDVTREYEAIVIGTMTAG-GMIDKPIGR------HSTKRTLMSVSPM--GKHAVTHYR 213
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
V + +T L+L TGR HQ+RVH A L P++GD YG
Sbjct: 214 VAE-HFREHTRLRLRLETGRTHQIRVHMA-YLQHPLLGDTAYG 254
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 129 (50.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 38/103 (36%), Positives = 58/103 (56%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
+KR + R Y A+V+GT G+I P+G+ S + T+++ + +HAVT Y+
Sbjct: 163 QKRDVTREYEAIVIGTMTAG-GMIDKPIGR------HSTKRTLMSVSPM--GKHAVTHYR 213
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
V + +T L+L TGR HQ+RVH A L P++GD YG
Sbjct: 214 VAE-HFREHTRLRLRLETGRTHQIRVHMA-YLQHPLLGDTAYG 254
>UNIPROTKB|P0AA41 [details] [associations]
symbol:truC species:83333 "Escherichia coli K-12"
[GO:0006399 "tRNA metabolic process" evidence=IMP] [GO:0009451 "RNA
modification" evidence=IMP] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U29581
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0564 PIR:C65061 RefSeq:NP_417271.1 RefSeq:YP_490999.1
ProteinModelPortal:P0AA41 SMR:P0AA41
EnsemblBacteria:EBESCT00000002568 EnsemblBacteria:EBESCT00000016436
GeneID:12933253 GeneID:947242 KEGG:ecj:Y75_p2728 KEGG:eco:b2791
PATRIC:32120998 EchoBASE:EB2963 EcoGene:EG13171
HOGENOM:HOG000275920 KO:K06175 OMA:FHPIMGD ProtClustDB:PRK11112
BioCyc:EcoCyc:G7449-MONOMER BioCyc:ECOL316407:JW2762-MONOMER
BioCyc:MetaCyc:G7449-MONOMER Genevestigator:P0AA41 Uniprot:P0AA41
Length = 260
Score = 124 (48.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 63/197 (31%), Positives = 89/197 (45%)
Query: 33 HRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRC 92
HRLDR +SG+L+MG + + +L F E+ +Q+ Y A+V G
Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQF--------------EQHQIQKRYHAIVRGW-LM 95
Query: 93 SKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ----VIKPSCHG------Y 142
+ V+ PL V+ + D+I + Q AVT Y+ V P G Y
Sbjct: 96 EEAVLDYPL----VE--ELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRY 149
Query: 143 TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG--WQTHRKWKQF-------HPSDLSK 193
++L P TGRKHQLR H A L PI+GD K+G Q + F H S LS
Sbjct: 150 GLVELEPKTGRKHQLRRHLAH-LRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208
Query: 194 DSNEEIPKEKTLHFGLD 210
++ + T+H GLD
Sbjct: 209 -THPFTGEPLTIHAGLD 224
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 34/102 (33%), Positives = 60/102 (58%)
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
++ +Q++Y+ALV+G V++APL K V++ I VN + + + TR+++
Sbjct: 171 EKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN----GKPSETRFRI 221
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 222 LEKFAEA-TLVQASPVTGRTHQIRVH-TQYMGHPIAWDDRYG 261
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 34/102 (33%), Positives = 60/102 (58%)
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
++ +Q++Y+ALV+G V++APL K V++ I VN + + + TR+++
Sbjct: 171 EKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN----GKPSETRFRI 221
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 222 LEKFAEA-TLVQASPVTGRTHQIRVH-TQYMGHPIAWDDRYG 261
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 120 (47.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 40/124 (32%), Positives = 59/124 (47%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVNNDQIMSAQHAVTR 131
E+R Q+ Y A V G ++G + PL + D N ++ N + ++ ++
Sbjct: 91 EQRKTQKSYLARVWGLVELNEGSVDLPL---ISDWPNRPKQKVDHENGKKSLTHYRVLSH 147
Query: 132 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ---THRKWKQFHP 188
I + T L+L+P+TGR HQLRVH LG PI+GD Y + T R Q H
Sbjct: 148 NDSIDEQAN--TLLELTPITGRSHQLRVHML-ALGHPILGDRLYAPEEALTMRNRLQLHA 204
Query: 189 SDLS 192
LS
Sbjct: 205 LKLS 208
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 120 (47.3 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
R+ + Y+A V G ++G ++ PL D + V + + ++TRYQV+
Sbjct: 90 RLTHKIYYARVWGVMEQNEGEVNLPL---CCDWPNRPKQKVCFEE----GRDSLTRYQVV 142
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
K T ++L P+TGR HQLRVH + LG PIVGD Y
Sbjct: 143 KRE-EKTTVVRLIPITGRSHQLRVHM-QSLGHPIVGDDLY 180
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 120 (47.3 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
R+ + Y+A V G ++G ++ PL D + V + + ++TRYQV+
Sbjct: 90 RLTHKIYYARVWGVMEQNEGEVNLPL---CCDWPNRPKQKVCFEE----GRDSLTRYQVV 142
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
K T ++L P+TGR HQLRVH + LG PIVGD Y
Sbjct: 143 KRE-EKTTVVRLIPITGRSHQLRVHM-QSLGHPIVGDDLY 180
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 119 (46.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 52/166 (31%), Positives = 76/166 (45%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
+HRLDR +SG+LV + A+ + +F A+ E +++ Y A+V G
Sbjct: 50 LHRLDRPTSGVLVFALSSQIASEVMPMF------ANHE--------MEKTYHAIVRGWIE 95
Query: 92 CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK----PSCHG------ 141
V+ PL + + D+I Q AQ AVT Y+ + P G
Sbjct: 96 -EANVLDYPLKEEL------DKIADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTR 148
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 187
Y +++ P TGRKHQLR H A L PIVGD +G H + + H
Sbjct: 149 YCLMEMQPKTGRKHQLRRHMAH-LRHPIVGDTTHGDGVHNRLFREH 193
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 119 (46.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 52/166 (31%), Positives = 76/166 (45%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
+HRLDR +SG+LV + A+ + +F A+ E +++ Y A+V G
Sbjct: 50 LHRLDRPTSGVLVFALSSQIASEVMPMF------ANHE--------MEKTYHAIVRGWIE 95
Query: 92 CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK----PSCHG------ 141
V+ PL + + D+I Q AQ AVT Y+ + P G
Sbjct: 96 -EANVLDYPLKEEL------DKIADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTR 148
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 187
Y +++ P TGRKHQLR H A L PIVGD +G H + + H
Sbjct: 149 YCLMEMQPKTGRKHQLRRHMAH-LRHPIVGDTTHGDGVHNRLFREH 193
>UNIPROTKB|H3BSG4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000565377 Bgee:H3BSG4 Uniprot:H3BSG4
Length = 173
Score = 113 (44.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 37 LKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 75
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 117 (46.2 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 42/145 (28%), Positives = 68/145 (46%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
L+ R+ G L++ R + + +F + + E+R ++ Y A + G
Sbjct: 44 LLSRVQAAFPGALLVHRLDRDTSGV-MVFAQTPHAQRNLGRQFEERKTRKTYVARLWGRL 102
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
G + PL +VD R V + + + AVT ++V++ T ++L P
Sbjct: 103 EPKTGTVDLPL---IVDWPNRPRQMVCHE----TGKPAVTDWRVLRYE-GDTTRVRLLPR 154
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQLRVHC + LG PI+GD Y
Sbjct: 155 TGRSHQLRVHC-QALGHPILGDPFY 178
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 78 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 137
+Q++Y ALV G ++ L K + +G +R+ VV+N Q+ + + TR++V++
Sbjct: 215 VQKFYHALVKGHWPTKLTRVTDALKKNDLKSG--ERVVVVDN-QL--GKESETRFRVLE- 268
Query: 138 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G T ++ P+TGR HQ+RVHC + G I D KYG
Sbjct: 269 RYRGATLVRAFPVTGRTHQIRVHC-QTSGHSIAMDAKYG 306
>UNIPROTKB|H3BMZ6 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000569601 Bgee:H3BMZ6 Uniprot:H3BMZ6
Length = 181
Score = 113 (44.8 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 40 LKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 78
>UNIPROTKB|H3BQN8 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 EMBL:CH471112 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL031033 UniGene:Hs.101742
HGNC:HGNC:14173 SMR:H3BQN8 Ensembl:ENST00000567114 Uniprot:H3BQN8
Length = 183
Score = 113 (44.8 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 37 LKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 75
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 92 (37.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 128 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
AVT Y++++ +T L+L TGR HQ+RVH A + P+VGD YG
Sbjct: 208 AVTHYRIME-HFRVHTRLRLRLETGRTHQIRVHMAHITH-PLVGDPVYG 254
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 26 SEPPR--LVHRLDRDSSGILVMGRTQTSAT-VLHSIFREK 62
++ PR +VHRLD+D++G++V+ +T + T ++ S+ R +
Sbjct: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166
>UNIPROTKB|J9NWF9 [details] [associations]
symbol:RPUSD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 CTD:285367 OMA:FSRTLQC
GeneTree:ENSGT00530000063800 EMBL:AAEX03012078 RefSeq:XP_541778.3
Ensembl:ENSCAFT00000047015 GeneID:484663 KEGG:cfa:484663
Uniprot:J9NWF9
Length = 352
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 55/198 (27%), Positives = 81/198 (40%)
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR----YQVIKP 137
YWA+ G P S+G I A L +D D + V + Q V R + V+
Sbjct: 172 YWAITDGIPATSEGNIQAALKLEHIDG--VDLVIPVKSPSRKDFQEGVKRTLSHFHVVAM 229
Query: 138 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ--FHPSDLSKDS 195
G ++L PLT QL+VH L P++GD+ Y + Q P++ +K
Sbjct: 230 GS-GCALVQLQPLTVFPSQLQVHMVLQL-CPVLGDHTYSARVGTVLGQRFLLPAESTKPQ 287
Query: 196 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 255
+ +P E L L L + LHLHC + LP + +
Sbjct: 288 RQ-VPDEALLR-RLRLTPSQAAQLPLHLHLHC--LHLPGMRP--------------REAP 329
Query: 256 LKLVAPLPSHMQRSWDVL 273
+KL+APLP + RS L
Sbjct: 330 MKLLAPLPPYFSRSLQCL 347
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 40/127 (31%), Positives = 68/127 (53%)
Query: 50 TSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 109
TS +L + ++++ S + EK +Q+ Y ALV G + + APL K ++ +G
Sbjct: 147 TSGVLL--VAKKRSALRSLHEQLREKG-MQKDYLALVRGQWQSHVKSVQAPLLKNILQSG 203
Query: 110 KSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 169
+RI V+ + + + TR++V + T ++ SP+TGR HQ+RVH + G PI
Sbjct: 204 --ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPVTGRTHQIRVH-TQYAGHPI 255
Query: 170 VGDYKYG 176
D +YG
Sbjct: 256 AFDDRYG 262
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 113 (44.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 54/193 (27%), Positives = 87/193 (45%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ ++ + H + + F+A + R Y AL G
Sbjct: 137 PGIVHRIDKDTSGLLVVAKSDAAH---HGLAAQ--FAAHSAE---------RHYTALCYG 182
Query: 89 TPRCS----KGVISAPL--GKVVVDNGKSDRITVVNNDQIM---SAQHAVTRYQVIK--- 136
P S +GV A G ++ + R Q + +HAVTR +V++
Sbjct: 183 VPDGSDPRLRGVKGASFEPGNILRLTTQLTRHPTDRQRQAVVFHGGRHAVTRARVVESFG 242
Query: 137 -PSCHGYT--WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 193
P+ WL+ TGR HQ+RVH A G ++GD YG + + P +
Sbjct: 243 QPAAVSLIDCWLE----TGRTHQIRVHMAHA-GHGLLGDPVYGGRRKLSPRALSPEAV-- 295
Query: 194 DSNEEIPKEKTLH 206
D+ P++ LH
Sbjct: 296 DAIGAFPRQ-ALH 307
Score = 42 (19.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 254 ETLKLVAPLPSHMQRSWDVL 273
E L APLP ++R +VL
Sbjct: 320 EKLSFSAPLPDDLERLLEVL 339
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 92 (37.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 62 KTFSASKEDNDN-EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KT +A D + R + R Y A+ G G++ P+G+ + K ++ V
Sbjct: 150 KTIAAQTNLVDALQLREITREYEAVANGVMTAG-GLVDEPIGR---HSTKRTQMAV---S 202
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
I + +VT Y+V++ +T L+L TGR HQ+RVH + + P+VGD YG
Sbjct: 203 YI--GRPSVTHYRVME-KYRLHTRLRLRLETGRTHQIRVHMSHITH-PLVGDPVYG 254
Score = 65 (27.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 29 PR--LVHRLDRDSSGILVMGRTQTSATVL 55
PR +VHRLD+D++G++V+ +T + T L
Sbjct: 130 PRAGIVHRLDKDTTGLMVVAKTIAAQTNL 158
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 36/104 (34%), Positives = 55/104 (52%)
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
R +++ Y A+ G P SKG I+ P+ +G + T++ + A T + V+
Sbjct: 152 RRVRKEYIAVTKGVPAFSKGEITMPI-YCKKQSGVGE--TLIPKE-------AKTVFSVL 201
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ S L LSP+TGRKHQLR+H ++ PI+GD KY T
Sbjct: 202 QSSKRHAVML-LSPVTGRKHQLRIHLSQFC-CPIIGDTKYSKDT 243
>TIGR_CMR|CPS_0536 [details] [associations]
symbol:CPS_0536 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_267294.1 ProteinModelPortal:Q489H0 STRING:Q489H0
GeneID:3520534 KEGG:cps:CPS_0536 PATRIC:21464415
HOGENOM:HOG000222064 OMA:MAEFWWG ProtClustDB:CLSK896118
BioCyc:CPSY167879:GI48-631-MONOMER Uniprot:Q489H0
Length = 567
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 45/154 (29%), Positives = 72/154 (46%)
Query: 30 RLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGT 89
R+ + + S G++V ++ +L E+ ++ N K I +R Y A + G
Sbjct: 397 RIKTQFPQASGGLIVHRLDMATSGLLMLALNERAHKHLQQQFMN-KEINKR-YVATIEGK 454
Query: 90 PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSP 149
+ G I PL D K +V ++ ++A T +Q+I+ + L L P
Sbjct: 455 LEKTSGEICLPLRGDFDDRPKQ----MVCHEH---GKYAETHWQLIE-EVDNTSKLFLYP 506
Query: 150 LTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHR 181
+TGR HQLR+HCA + L PI+GD YG R
Sbjct: 507 ITGRTHQLRMHCAHPDGLNLPIIGDSLYGHSADR 540
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS-DRITVVNNDQIMSAQHAVTRY 132
+ R + R Y +V+G G I+AP+G+ +G+ R+ V+ + AV+ Y
Sbjct: 162 QSRSVSRIYECIVIGVVTAG-GKINAPIGR----HGQQRQRMAVMEG-----GKQAVSHY 211
Query: 133 QVIKP-SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+V++ H + +KL TGR HQ+RVH A + P+VGD YG
Sbjct: 212 RVLERFRSHTHVRVKLE--TGRTHQIRVHMAHI-NFPLVGDPAYG 253
>TIGR_CMR|CJE_0022 [details] [associations]
symbol:CJE_0022 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
HOGENOM:HOG000275921 RefSeq:YP_178049.1 ProteinModelPortal:Q5HXD6
STRING:Q5HXD6 GeneID:3230677 KEGG:cjr:CJE0022 PATRIC:20041733
OMA:DFAHARV ProtClustDB:CLSK872338
BioCyc:CJEJ195099:GJC0-21-MONOMER Uniprot:Q5HXD6
Length = 300
Score = 92 (37.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS-AQHAVTRY 132
EK+++Q+ Y AL G + + I + K + N + V QI + A+T +
Sbjct: 143 EKKLVQKEYLALANG--KIEENFI---IDKAI--NLAKNYDDVKTRMQICKEGKQAITEF 195
Query: 133 QVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++++ P + T L PLTGR+HQ+RVH T I+GD YG
Sbjct: 196 EILEYFPKINA-TLLLCKPLTGRQHQIRVHLHYKNHT-ILGDPLYG 239
Score = 61 (26.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
+ HRLD+++SG++++ + + + L ++F +K
Sbjct: 114 VAHRLDKETSGLILVAKNKKAQIDLKALFEKK 145
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 63 TFSASKE-DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
T +A +E +R ++ Y A V G P ++G++ PL + D + V
Sbjct: 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL---ICDWPNRPKQKVCYE-- 130
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ + A T Y+V++ + + L P+TGR HQLRVH LG PI+GD Y
Sbjct: 131 --TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML-ALGHPILGDRFY 181
>TAIR|locus:2824464 [details] [associations]
symbol:AT1G56345 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 EMBL:AC058785 EMBL:AC069159
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 EMBL:BT010200 EMBL:AK228224 IPI:IPI00531084
PIR:D96605 RefSeq:NP_176031.2 UniGene:At.45959
ProteinModelPortal:Q7XA65 SMR:Q7XA65 IntAct:Q7XA65 STRING:Q7XA65
EnsemblPlants:AT1G56345.1 GeneID:842088 KEGG:ath:AT1G56345
TAIR:At1g56345 HOGENOM:HOG000275917 InParanoid:Q7XA65 OMA:GAWRVYA
PhylomeDB:Q7XA65 ProtClustDB:CLSN2680513 Genevestigator:Q7XA65
Uniprot:Q7XA65
Length = 322
Score = 86 (35.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
P +GR HQ+R+HC + LG PI GD KY
Sbjct: 252 PRSGRTHQIRLHC-QYLGIPIRGDVKY 277
Score = 67 (28.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 17 AATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
+A + D S L +RLDRD+SG++++ ++ A L F E
Sbjct: 101 SAPQIVLDSSSEYHLANRLDRDTSGVMIITKSHKVAAKLVKAFTE 145
>MGI|MGI:2141440 [details] [associations]
symbol:Rpusd3 "RNA pseudouridylate synthase domain
containing 3" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:2141440
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 CTD:285367 HOGENOM:HOG000082513 HOVERGEN:HBG098171
OrthoDB:EOG4R23VC OMA:FSRTLQC EMBL:AK076749 EMBL:AK133871
EMBL:BC038081 EMBL:BC116825 EMBL:BC116827 IPI:IPI00229799
IPI:IPI00459320 RefSeq:NP_001028376.1 UniGene:Mm.31204
ProteinModelPortal:Q14AI6 SMR:Q14AI6 PhosphoSite:Q14AI6
PRIDE:Q14AI6 Ensembl:ENSMUST00000113092 Ensembl:ENSMUST00000129047
GeneID:101122 KEGG:mmu:101122 UCSC:uc009dfy.2 UCSC:uc009dga.1
GeneTree:ENSGT00530000063800 InParanoid:Q14AI6 NextBio:354774
Bgee:Q14AI6 CleanEx:MM_RPUSD3 Genevestigator:Q14AI6 Uniprot:Q14AI6
Length = 344
Score = 113 (44.8 bits), Expect = 0.00054, P = 0.00054
Identities = 44/157 (28%), Positives = 72/157 (45%)
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN---NDQIMSAQHAVTRYQVIKPS 138
Y A+ G P S+G + PL K+ N + V++ D + ++R+ V+
Sbjct: 164 YCAVTDGIPEPSEGTVCMPL-KMEQMNDVDLAVPVMSPSRKDIQEGVKRTLSRFHVMATG 222
Query: 139 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ--FHPSDLSKDSN 196
G ++L PLT +QL+VH A L PI+GD+ Y + Q P++ +K
Sbjct: 223 -RGCALVQLQPLTVFPNQLQVHMALQL-CPILGDHTYAARVGTVLGQRFLWPAETTKPQR 280
Query: 197 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 233
+ + + H L S S + + P LHLH + LP
Sbjct: 281 QVLDEALLRHLRL---SPSQVAQMP-LHLHLHRLLLP 313
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 93 (37.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 32/91 (35%), Positives = 47/91 (51%)
Query: 130 TRYQVIKPSCHGYTWLKL-SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP 188
T +Q K S +G T + L PLTGR HQ+RVH + LG PI+ D Y + K
Sbjct: 500 TTFQ--KLSQNGTTSVVLCKPLTGRMHQIRVHL-QYLGYPILNDPLYNHEVFGPLKG-RS 555
Query: 189 SDLSKDSNEEIPKEK-TLH-----FGLDLES 213
D+ S+EE+ ++ +H G+D +S
Sbjct: 556 GDIGGKSDEELIRDLINIHNAENWLGIDCDS 586
Score = 66 (28.3 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 30 RLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
R +HRLDR +SG+L+ GR+ A + R +
Sbjct: 422 RTIHRLDRLTSGLLLFGRSPKKARQMEQQIRNR 454
>ASPGD|ASPL0000068180 [details] [associations]
symbol:AN10936 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BN001304 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 OMA:GHPISND
EnsemblFungi:CADANIAT00000078 Uniprot:C8VCJ6
Length = 572
Score = 95 (38.5 bits), Expect = 0.00097, Sum P(2) = 0.00096
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 115 TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
T +D+ +A+ A + S GY+ + PLTGR HQ+RVH + LG PI D
Sbjct: 263 TTSTSDEGENARPATPPPSYVNES-EGYSIVHCFPLTGRTHQIRVHL-QFLGHPISNDPI 320
Query: 175 YGWQTHRKWKQFHPSDLSK-DSNEEIPKE 202
Y ++R+ F P DL K DS+ ++ +E
Sbjct: 321 Y---SNRR--VFGP-DLGKNDSSADLDEE 343
Score = 61 (26.5 bits), Expect = 0.00097, Sum P(2) = 0.00096
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
PR +RLDR +SG++ +G+T A + +E+T
Sbjct: 170 PRPCNRLDRLTSGVMFVGKTAQGADRMTVKLKERT 204
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 275 275 0.00079 115 3 11 22 0.37 34
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 64
No. of states in DFA: 604 (64 KB)
Total size of DFA: 226 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.17u 0.16s 22.33t Elapsed: 00:00:01
Total cpu time: 22.18u 0.16s 22.34t Elapsed: 00:00:01
Start: Sat May 11 02:41:45 2013 End: Sat May 11 02:41:46 2013