BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023907
(275 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225428918|ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
vinifera]
gi|296090438|emb|CBI40257.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/275 (76%), Positives = 242/275 (88%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGGIGI+RS+DELAAT L YD SEPPRLVHRLDRDSSGIL+MGRTQTSAT+LHSIFR
Sbjct: 202 LPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFR 261
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKTF AS D D +KRILQR YWALV+G+PR +G+ISAPLGKVVVD+GKS+RIT+V+N
Sbjct: 262 EKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNV 321
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q MS+QHA+T Y+VIK SCHGYTWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H
Sbjct: 322 QTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 381
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
RKWKQ S++ K+ +E + KT FGLDLESGSIL+KQP LHLHCK+M LPNVS A+Q
Sbjct: 382 RKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQ 441
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+QLS+ CD+S+LE+L+ VAPLPSHMQRSWD+LNS
Sbjct: 442 NLQLSAECDLSELESLEFVAPLPSHMQRSWDILNS 476
>gi|255555275|ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542055|gb|EEF43599.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 536
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/275 (73%), Positives = 231/275 (84%), Gaps = 1/275 (0%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGGIGI+ S DELAA+CL+YDYSEPPRLVHRLDRDSSGILVMGRTQTS VLHS+FR
Sbjct: 263 MPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFR 322
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKTF+AS D +RILQR YWALV+G+PR KG+ISAPLGKVVVD+GKSDRITVV N
Sbjct: 323 EKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITVVENA 382
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S QHAVT+Y+V++ S HGY WL+LSP+TGRKHQLRVHCAEVLGTPIVGDYKYGWQ H
Sbjct: 383 ESTSFQHAVTQYRVME-SSHGYAWLELSPITGRKHQLRVHCAEVLGTPIVGDYKYGWQVH 441
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
RKWKQ +L K SNE +K L FG+DLESGSI EK PRLHLHCK+M LP+VSQA++
Sbjct: 442 RKWKQLPFPNLEKISNENALCKKILPFGIDLESGSISEKHPRLHLHCKQMVLPDVSQALR 501
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
VQ SS D S L++++L APLPS+MQRSWD+LNS
Sbjct: 502 GVQTSSNYDFSDLKSIELDAPLPSYMQRSWDILNS 536
>gi|224105621|ref|XP_002313876.1| predicted protein [Populus trichocarpa]
gi|222850284|gb|EEE87831.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/273 (72%), Positives = 233/273 (85%), Gaps = 1/273 (0%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGGIGI+RS+DEL+A+C + DYSEPPRLVHRLDRD SGILVMGRTQTSATVLH+IFR
Sbjct: 53 MPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFR 112
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +AS +D N++RILQR YWALV+G+PR KG+ISAPLGKVVVDNGKSDRITVV N
Sbjct: 113 EKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENS 172
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q +S+QHAVT+Y+VI+ S HG+TWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKY WQ H
Sbjct: 173 QNLSSQHAVTQYRVIE-SSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAH 231
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
R WKQ S++ +SN++ EK L F LDL+SGSI EK PRLHLHCK+M LP+VS+A+Q
Sbjct: 232 RNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQ 291
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
VQLSS D S+L +LK APLP +M++SWD+L
Sbjct: 292 DVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 324
>gi|356495831|ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
max]
Length = 427
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 221/274 (80%), Gaps = 2/274 (0%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGGI I+RS+D +AA L Y YS+PPRLVHRLDRD SGILVMGRT TS TVLHSIFR
Sbjct: 155 MPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFR 214
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT AS +D EKRILQR YWALV+G PR KG+++A LGKVVVDNG+SDRIT+V+N
Sbjct: 215 EKTSRAS-DDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNS 273
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+MS+QHA+T Y+VI S GYTWL+L+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H
Sbjct: 274 TLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 333
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
RKW F ++ +DS EE+ E+ L FGL+L GSI E PRLHLHCK+M LPN+SQA+Q
Sbjct: 334 RKWGHFDLPNV-EDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQ 392
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
VQ +S CD+S +E L+LVA LP +MQRSWDV N
Sbjct: 393 NVQSASSCDLSLVEELELVADLPPYMQRSWDVTN 426
>gi|358343831|ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
gi|355501934|gb|AES83137.1| RNA pseudourine synthase [Medicago truncatula]
Length = 430
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/277 (68%), Positives = 225/277 (81%), Gaps = 3/277 (1%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGGI I+ S+D +AA L YDYS+PPRLVHRLDRD SGILVMGRT+TS +LHSIFR
Sbjct: 155 MPVQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRDCSGILVMGRTKTSTALLHSIFR 214
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT AS E+ND EK ILQR YWALV+G PR S GV++APLGKVVVDNGKSDRIT+V+N
Sbjct: 215 EKTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNS 274
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
++S+QHAVT Y+VI S HG+TWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 275 ALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 334
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+KW QF S+L +DS EE KE+ L FGL+L GSI +K PRLHLHCK++ LPN+SQA+Q
Sbjct: 335 KKWGQFDFSNL-EDSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQALQ 393
Query: 241 KVQ--LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
VQ S D+S +E+L+L A LP +M++SW+V NS
Sbjct: 394 NVQSVSDSSYDLSAVESLELEADLPPYMKKSWEVTNS 430
>gi|449438639|ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 466
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/277 (65%), Positives = 226/277 (81%), Gaps = 10/277 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGGIG++RS+DELAA+CL+Y YSEPPRLVHRLDRDSSGIL+MGRT TS ++LHS+FR
Sbjct: 198 LPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFR 257
Query: 61 EKTFSASKEDN--DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
EKTF ASK N D+EK+IL + YWALV+G+PR SKG+I+APLGK+V+D+G+S++I V++
Sbjct: 258 EKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVID 317
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
N + M Q A+T+Y+VIK S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ
Sbjct: 318 NAEPMPFQQAITQYKVIK-SHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 376
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H+ WK F S+ K+ K++ L FGLD ESGSI E PRLHLHCK++TLP+VS A
Sbjct: 377 AHKNWKPFC-SNFHKNQG----KKQFLPFGLDFESGSIAENNPRLHLHCKQLTLPDVSFA 431
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ L C S+LE L+L APLPS+MQ+SWD++NS
Sbjct: 432 LHNDSLDRDC--SRLECLELDAPLPSYMQKSWDIINS 466
>gi|449526979|ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/276 (65%), Positives = 225/276 (81%), Gaps = 10/276 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGGIG++RS+DELAA+CL+Y YSEPPRLVHRLDRDSSGIL+MGRT TS ++LHS+FR
Sbjct: 203 LPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFR 262
Query: 61 EKTFSASKEDN--DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
EKTF ASK N D+EK+IL + YWALV+G+PR SKG+I+APLGK+V+D+G+S++I V++
Sbjct: 263 EKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVID 322
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
N + M Q A+T+Y+VIK S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ
Sbjct: 323 NAEPMPFQQAITQYKVIK-SHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 381
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H+ WK F S+ K+ K++ L FGLD ESGSI E PRLHLHCK++TLP+VS A
Sbjct: 382 AHKNWKPFC-SNFHKNQG----KKQFLPFGLDFESGSIAENSPRLHLHCKQLTLPDVSFA 436
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L C S+LE L+L APLPS+MQ+SWD++N
Sbjct: 437 LHNDSLDRDC--SRLECLELDAPLPSYMQKSWDIIN 470
>gi|297830600|ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329022|gb|EFH59441.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 170/275 (61%), Positives = 208/275 (75%), Gaps = 6/275 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI+ SIDELAATCLT+D SE PRLVHRLDRD SG+LV+ RTQT+ATVLHSIFR
Sbjct: 201 LAVQGGSGIKTSIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFR 260
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT AS + L+R Y ALV+G PR KG ISAPL KVVVD+GKSDRITV +N
Sbjct: 261 EKTCGASAYGVKKNIKSLKRKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNG 320
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+++S QHA+T Y+VI+ S HGYTWL+L PLTGRKHQLRVHCAEVLGTPI+GDYKYGWQ H
Sbjct: 321 ELVSTQHAITEYKVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAH 380
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ + F S+ + P FGLDL+ G + KQP LHLH K++ LPN+SQ ++
Sbjct: 381 KAREPFVSSETTPTKPSSSP------FGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLE 434
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
K+Q+SS D+S L++LK APLPSHMQ S+++L S
Sbjct: 435 KMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>gi|15230381|ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|11994467|dbj|BAB02469.1| unnamed protein product [Arabidopsis thaliana]
gi|110737723|dbj|BAF00800.1| hypothetical protein [Arabidopsis thaliana]
gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis thaliana]
gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
Length = 477
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/275 (60%), Positives = 210/275 (76%), Gaps = 6/275 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI+ SIDELAA+CL +D SE PRLVHRLDRD SG+LV+ RTQT+ATVLHSIFR
Sbjct: 201 LAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFR 260
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT AS + L+R Y ALV+G P +G ISAPL KVVVD+GKS+RITV +N
Sbjct: 261 EKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNG 320
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+++S QHA+T Y+VI+ S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H
Sbjct: 321 ELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 380
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ + F +S ++N K+ + FGLDL+ G + KQP LHLH K++ LPN+SQ ++
Sbjct: 381 KAREPF----VSSENNPT--KQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLE 434
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
K+Q+SS D+S L++LK APLPSHMQ S+++L S
Sbjct: 435 KMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>gi|357154257|ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like
[Brachypodium distachyon]
Length = 465
Score = 309 bits (791), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 158/276 (57%), Positives = 198/276 (71%), Gaps = 8/276 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA + SE PRLVHRLDRD SG+LV+GRTQ SA++LH+IFR
Sbjct: 194 MPVQGGVGIKNSIDVLAPM-FEENSSEAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFR 252
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D +++LQR Y ALV+GTPR SKG++SAPL KV++ +GKS+R+TV
Sbjct: 253 EKTADALA---DGTQQVLQRKYVALVIGTPRHSKGLLSAPLAKVLLQDGKSERLTVKAGP 309
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
S Q A+T Y+VI+ G+TWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 310 NTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 369
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ W P + EE+ K++ L FGL L GS++E+QP+LHLHCK+M LP++S A+Q
Sbjct: 370 QNWS---PLPAPQAIEEELLKKRRLPFGLVLGGGSVVEEQPQLHLHCKQMVLPDISAAVQ 426
Query: 241 KVQLSSGC-DVSKLETLKLVAPLPSHMQRSWDVLNS 275
+Q D S LE L VAPLP HM+ SW+VL S
Sbjct: 427 GLQSEDADRDFSDLEKLSFVAPLPQHMRLSWEVLKS 462
>gi|326504872|dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 472
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 156/276 (56%), Positives = 199/276 (72%), Gaps = 8/276 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA + S+ PRLVHRLDRD SG+LV+GRTQ SA++LH+IFR
Sbjct: 201 MPVQGGVGIKNSIDVLAPM-FEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFR 259
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D +++LQR Y ALV+GTPR KG++SAPL KV++ +GKS+R+TV
Sbjct: 260 EKTADALA---DGTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGP 316
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
S Q A+T Y+VI+ G+TWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 317 NTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 376
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ W P +S+ ++E+ +++ L FGL L GSI E+QP+LHLHCK+M LP++S A+Q
Sbjct: 377 QDWT---PLPVSQTVDKELLRKQRLPFGLVLGGGSIAEQQPQLHLHCKQMMLPDISAAVQ 433
Query: 241 KVQLSSGC-DVSKLETLKLVAPLPSHMQRSWDVLNS 275
+Q D S LE L VAPLP HM+ SW+VL S
Sbjct: 434 GLQSEDADRDFSDLEKLSFVAPLPLHMRLSWEVLKS 469
>gi|218201639|gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
Length = 465
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/276 (56%), Positives = 198/276 (71%), Gaps = 8/276 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA + + SE PRLVHRLDRD SGILV+GR Q S ++LH+IFR
Sbjct: 194 MPVQGGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFR 252
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+TV +
Sbjct: 253 EKTADALA---DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASS 309
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
S Q A+T Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 310 NAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 369
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+KW P L + +EE+ +++ L FGL + GSI E+QP+LHLHCK+M LP+VS A+
Sbjct: 370 QKW---MPLPLPRTIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDVSVALH 426
Query: 241 KVQLSS-GCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
++Q S D S LE L VAPLP HM+ SW++L S
Sbjct: 427 RLQSSDVNPDFSDLEKLNFVAPLPLHMRLSWEILKS 462
>gi|222641041|gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
Length = 465
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/276 (56%), Positives = 198/276 (71%), Gaps = 8/276 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA + + SE PRLVHRLDRD SGILV+GR Q S ++LH+IFR
Sbjct: 194 MPVQGGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFR 252
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+T+ +
Sbjct: 253 EKTADALA---DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASS 309
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
S Q A+T Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 310 NAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 369
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+KW P L + +EE+ +++ L FGL + GSI E+QP+LHLHCK+M LP+VS A+
Sbjct: 370 QKW---MPLPLPRTIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDVSVALH 426
Query: 241 KVQLSS-GCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
++Q S D S LE L VAPLP HM+ SW++L S
Sbjct: 427 RLQSSDVNPDFSDLEKLNFVAPLPLHMRLSWEILKS 462
>gi|238013094|gb|ACR37582.1| unknown [Zea mays]
Length = 272
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/276 (55%), Positives = 196/276 (71%), Gaps = 8/276 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA SE PRLVHRLDRD SG+LV+GRTQ SA+++H+IFR
Sbjct: 1 MPVQGGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFR 59
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D +++LQR Y ALV+G PR KG++SAPL KVV+ +G+S+R+TV
Sbjct: 60 EKTADAL---GDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGS 116
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
S Q A+T Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 117 NTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 176
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ W P + + ++E+ K++ L FGL L GS+ E+QP+LHLHCK+M LP++S A+Q
Sbjct: 177 QNWM---PLPMPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQ 233
Query: 241 KVQLSSG-CDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+++ S D S LE L VAPLP HMQ SW +L S
Sbjct: 234 QLRSSDADHDFSDLEKLSFVAPLPLHMQLSWKILLS 269
>gi|226501200|ref|NP_001151637.1| LOC100285271 [Zea mays]
gi|195648278|gb|ACG43607.1| RNA binding protein [Zea mays]
Length = 439
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/245 (55%), Positives = 178/245 (72%), Gaps = 7/245 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA SE PRLVHRLDRD SG+LV+GRTQ SA+++H+IFR
Sbjct: 191 MPVQGGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFR 249
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D +++LQR Y ALV+G PR KG++SAPL KVV+ +G+S+R+TV
Sbjct: 250 EKTADAL---GDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGS 306
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
S Q A+T Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H
Sbjct: 307 NTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 366
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ W P + + ++E+ K++ L FGL L GS+ E+QP+LHLHCK+M LP++S A+Q
Sbjct: 367 QNW---MPLPMPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQ 423
Query: 241 KVQLS 245
+++ S
Sbjct: 424 QLRSS 428
>gi|51970580|dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
Length = 326
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 191/282 (67%), Gaps = 10/282 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + I S+D LAA L++ E PRLVHRLDR++SG+LVMGRT+ S LHS+F
Sbjct: 45 LPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFS 104
Query: 61 E-KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ K ++S + + + + YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ +
Sbjct: 105 DYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQG 164
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
++Q A+T Y+V+ P +G +W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 165 SGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFV 224
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H++WKQ D+ + + P + GLD++ GS+L K P LHLHC+EM LPN+++ +
Sbjct: 225 HKRWKQMPQVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFL 282
Query: 240 QKVQ------LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ L +G + K + L+ VA +PSHM+ SW++++S
Sbjct: 283 HVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 323
>gi|225443375|ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 192/288 (66%), Gaps = 21/288 (7%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA LT+DY E P+LVHRLDR+SSG+L+MGRT+ S LH +F
Sbjct: 197 VPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFS 256
Query: 61 E--KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ K S SK +D + QR YWALV+G+P+ +GVI APL KV++D+GK++R+ + N
Sbjct: 257 DINKAKSLSKAWDDACEATCQR-YWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILAN 315
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ ++Q A+T Y+V+ P +G +W++L P T RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 316 QSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWF 375
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
HR+WKQ DL + + P + GLD++ GS+L K P LHLHC+E+ LPN+++
Sbjct: 376 VHRRWKQMPRVDLEPTTGK--PYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKF 433
Query: 239 I-----------QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ Q +LS D+ L+ VA +P+HM+ SW++++S
Sbjct: 434 LPILDPKPKNQNQYPKLSLKPDI-----LRFVASMPNHMKISWNLMSS 476
>gi|42563328|ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA pseudourine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis thaliana]
gi|56790228|gb|AAW30031.1| At1g78910 [Arabidopsis thaliana]
gi|332198052|gb|AEE36173.1| RNA pseudourine synthase 3 [Arabidopsis thaliana]
Length = 478
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 191/282 (67%), Gaps = 10/282 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + I S+D LAA L++ E PRLVHRLDR++SG+LVMGRT+ S LHS+F
Sbjct: 197 LPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFS 256
Query: 61 E-KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ K ++S + + + + YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ +
Sbjct: 257 DYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQG 316
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
++Q A+T Y+V+ P +G +W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 317 SGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFV 376
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H++WKQ D+ + + P + GLD++ GS+L K P LHLHC+EM LPN+++ +
Sbjct: 377 HKRWKQMPQVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFL 434
Query: 240 QKVQ------LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ L +G + K + L+ VA +PSHM+ SW++++S
Sbjct: 435 HVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 475
>gi|297735761|emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 192/288 (66%), Gaps = 21/288 (7%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA LT+DY E P+LVHRLDR+SSG+L+MGRT+ S LH +F
Sbjct: 199 VPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFS 258
Query: 61 E--KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ K S SK +D + QR YWALV+G+P+ +GVI APL KV++D+GK++R+ + N
Sbjct: 259 DINKAKSLSKAWDDACEATCQR-YWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILAN 317
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ ++Q A+T Y+V+ P +G +W++L P T RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 318 QSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWF 377
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
HR+WKQ DL + + P + GLD++ GS+L K P LHLHC+E+ LPN+++
Sbjct: 378 VHRRWKQMPRVDLEPTTGK--PYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKF 435
Query: 239 I-----------QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ Q +LS D+ L+ VA +P+HM+ SW++++S
Sbjct: 436 LPILDPKPKNQNQYPKLSLKPDI-----LRFVASMPNHMKISWNLMSS 478
>gi|326522893|dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 357
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/281 (47%), Positives = 191/281 (67%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L++ E P+LVHRLDRDSSG+L+MGRT+ T LH +F
Sbjct: 77 VPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTREGFTRLHWLFT 136
Query: 61 EKTFS--ASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ AS+ N + LQR YWALV+GTP S+GVISAPL KV++D+GK++R+ + +
Sbjct: 137 SIKLAKTASQTWNTACESYLQR-YWALVIGTPTESEGVISAPLTKVLLDDGKAERVILAH 195
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
I AQ AVT Y+V+ P+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 196 PSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 255
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++
Sbjct: 256 VHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAKF 313
Query: 239 IQKVQL--SSGCDVSKLET--LKLVAPLPSHMQRSWDVLNS 275
+ +G SK + L+ +AP+P+HM+ SW++++S
Sbjct: 314 LSNTGEWHDNGTPWSKEKPNLLRFIAPMPAHMKISWNIMSS 354
>gi|125604035|gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 187/281 (66%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+LVHRLDR+SSG+L+ GRT+ S T LH +F
Sbjct: 229 VPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFT 288
Query: 61 EKTFSASKED--NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ + N + +QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + +
Sbjct: 289 SVNLAKTNSQVWNAACEAYMQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAH 347
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
I AQ AVT Y+V+ P+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 348 PSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 407
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++
Sbjct: 408 VHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKF 465
Query: 239 IQKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + + K L+ +AP+P+HM+ SW++++S
Sbjct: 466 LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 506
>gi|42408521|dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group]
gi|42409169|dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group]
Length = 340
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 187/281 (66%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+LVHRLDR+SSG+L+ GRT+ S T LH +F
Sbjct: 60 VPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFT 119
Query: 61 EKTFSASKED--NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ + N + +QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + +
Sbjct: 120 SVNLAKTNSQVWNAACEAYMQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAH 178
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
I AQ AVT Y+V+ P+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 179 PSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 238
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++
Sbjct: 239 VHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKF 296
Query: 239 IQKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + + K L+ +AP+P+HM+ SW++++S
Sbjct: 297 LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 337
>gi|357141930|ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
[Brachypodium distachyon]
Length = 479
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 130/281 (46%), Positives = 189/281 (67%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y + P+LVHRLDRD+SG+L+MGRT+ S T LH +F
Sbjct: 199 VPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESFTRLHWLFT 258
Query: 61 EKTFS--ASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ AS N + LQR YWALV+GTP+ S+GVISAPL KV++D+GK++R+ + +
Sbjct: 259 SVKLARTASPIWNSACESYLQR-YWALVIGTPKESEGVISAPLTKVLLDDGKAERVILAH 317
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
I AQ AVT Y+V+ P+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 318 PSGIDGAQEAVTEYRVMGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 377
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D + E+ + GL+++ GS+L K P LHLHC+EM +PN+++
Sbjct: 378 VHQRWKQNPQPDFEPFTGEQYKLRRP--EGLEVQKGSVLSKVPLLHLHCREMVVPNIAKF 435
Query: 239 IQKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + K L+ +AP+P+HM+ SW++++S
Sbjct: 436 LSNTGDWHDDGTPWSKEKPNLLRFIAPMPAHMKISWNIMSS 476
>gi|115477338|ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA pseudourine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|125562210|gb|EAZ07658.1| hypothetical protein OsI_29911 [Oryza sativa Indica Group]
Length = 475
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 187/281 (66%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+LVHRLDR+SSG+L+ GRT+ S T LH +F
Sbjct: 195 VPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFT 254
Query: 61 EKTFSASKED--NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ + N + +QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + +
Sbjct: 255 SVNLAKTNSQVWNAACEAYMQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAH 313
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
I AQ AVT Y+V+ P+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 314 PSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 373
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++
Sbjct: 374 VHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKF 431
Query: 239 IQKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + + K L+ +AP+P+HM+ SW++++S
Sbjct: 432 LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 472
>gi|297839759|ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
lyrata]
gi|297333602|gb|EFH64020.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/282 (44%), Positives = 190/282 (67%), Gaps = 10/282 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + I S+D LAA L++ E PRLVHRLDR++SG+LVMGR++ S LHS+F
Sbjct: 196 LPVKGNVPIHNSMDALAAAALSFGKDEGPRLVHRLDRETSGLLVMGRSKESIHYLHSVFS 255
Query: 61 E-KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ K ++S + + + + YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ +
Sbjct: 256 DYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQG 315
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
++Q A+T Y+V+ P +G +WL+L P+T RKHQLRVHCAE LGT IVGDYKYGW
Sbjct: 316 SGFEASQEAITEYRVLGPMINGCSWLELRPITSRKHQLRVHCAEALGTSIVGDYKYGWFV 375
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H++WKQ D+ + + P + GLD++ GS+L K P LHLHC+EM LPN+++ +
Sbjct: 376 HKRWKQMPQVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFL 433
Query: 240 QKVQ------LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ L +G + K + L+ VA +PSHM+ SW++++S
Sbjct: 434 HVLNQQETEPLRTGI-IDKPDLLRFVASMPSHMKISWNLMSS 474
>gi|356562211|ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
max]
Length = 554
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 129/281 (45%), Positives = 189/281 (67%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + + S+D LAA L+YDY E P+LVHRLDR+SSGIL++GRT+ S + L +F
Sbjct: 274 LPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFS 333
Query: 61 E--KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
S+ K+ N+ + QR YWALV+GTP+ +G+I APL KV++++GK++RI + +
Sbjct: 334 NINNAKSSCKDWNEACEATYQR-YWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAH 392
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + Q AVT Y+V+ P +G +W++L PLT RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 393 HSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWF 452
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H +WKQ D+ + + P + GLD++ GS+L K P LHLHC+E+ LPN+ +
Sbjct: 453 VHSRWKQMPRVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKF 510
Query: 239 IQKVQLSSGCDVSKL----ETLKLVAPLPSHMQRSWDVLNS 275
+ + SS + L + L+ VA +PSHM+ SW++++S
Sbjct: 511 MHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSS 551
>gi|255571790|ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223533842|gb|EEF35573.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 468
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 190/282 (67%), Gaps = 11/282 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + + S+D LAA L+YDY E P+LV RLDR+SSG+L+MGRT+ S L +F
Sbjct: 188 LPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKESIDHLQWLFS 247
Query: 61 E--KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ K+ S K ND K QR YWALV+G+P+ +G+I APL KV++++GK++R+ +
Sbjct: 248 DVNKSNSRCKAWNDACKATYQR-YWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQ 306
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + ++Q A+T Y+V+ P +G +W++L PLT RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 307 HSGLEASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWC 366
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D+ S + P + GLD++ GS+L K P LHLHC+E LPN+++
Sbjct: 367 VHQRWKQMPRVDIEPFSGK--PYKLRRPAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKF 424
Query: 239 IQKVQLSS-----GCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + S D +K + L+ VA +P+HM+ SW++++S
Sbjct: 425 LAVLNEKSENIHPALD-AKPDLLRFVASMPTHMKISWNLMSS 465
>gi|449441766|ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 188/283 (66%), Gaps = 14/283 (4%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF- 59
+PV+G + + S+D LA L+YDY + P+LVHRLDR+SSGIL+MGRT+ S L +F
Sbjct: 192 LPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQWLFS 251
Query: 60 --REKTFSASK-EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 116
R F+ E+ N + YWALV+G PR +GVISAPL KV++D+GK++R+ +
Sbjct: 252 NIRNAKFTCKAWEEACNAT---YQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVVL 308
Query: 117 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
N I ++Q A+T Y+V+ P+ +G +W++L P T RKHQLR+HCAE LGTPIVGDYKYG
Sbjct: 309 ANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYG 368
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
W HR+WKQ D+ S P + GLD++ GS+L K P LHLHC+E+ LPN++
Sbjct: 369 WFVHRRWKQMPRVDVEPISGR--PYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIA 426
Query: 237 QAIQKVQLSSGCD--VSKLET--LKLVAPLPSHMQRSWDVLNS 275
+ + V G + VS ++ L+ VA +PSHM+ SW++++S
Sbjct: 427 KFLN-VFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSS 468
>gi|449490137|ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 188/283 (66%), Gaps = 14/283 (4%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF- 59
+PV+G + + S+D LA L+YDY + P+LVHRLDR+SSGIL+MGRT+ S L +F
Sbjct: 192 LPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQWLFS 251
Query: 60 --REKTFSASK-EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 116
R F+ E+ N + YWALV+G PR +GVISAPL KV++D+GK++R+ +
Sbjct: 252 NIRNAKFTCKAWEEACNAT---YQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVIL 308
Query: 117 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
N I ++Q A+T Y+V+ P+ +G +W++L P T RKHQLR+HCAE LGTPIVGDYKYG
Sbjct: 309 ANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYG 368
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
W HR+WKQ D+ S P + GLD++ GS+L K P LHLHC+E+ LPN++
Sbjct: 369 WFVHRRWKQMPRVDVEPISGR--PYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIA 426
Query: 237 QAIQKVQLSSGCD--VSKLET--LKLVAPLPSHMQRSWDVLNS 275
+ + V G + VS ++ L+ VA +PSHM+ SW++++S
Sbjct: 427 KFLN-VFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSS 468
>gi|413921569|gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 340
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/280 (43%), Positives = 183/280 (65%), Gaps = 7/280 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+LVHRLDR+SSG+++MGRT+ S T LH +
Sbjct: 60 VPMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLT 119
Query: 61 EKTFSASKEDNDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ + N+ + YWALV+GTP+ +GVISAP+ KV++D+GK++R+ + +
Sbjct: 120 SVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHP 179
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
I AQ A+T Y+V+ P+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 180 SGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 239
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H+ WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++ +
Sbjct: 240 HQTWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFL 297
Query: 240 QKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + K L+ VAP+P HM+ SW++++S
Sbjct: 298 SSTGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSS 337
>gi|413921570|gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 478
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/280 (43%), Positives = 183/280 (65%), Gaps = 7/280 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+LVHRLDR+SSG+++MGRT+ S T LH +
Sbjct: 198 VPMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLT 257
Query: 61 EKTFSASKEDNDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ + N+ + YWALV+GTP+ +GVISAP+ KV++D+GK++R+ + +
Sbjct: 258 SVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHP 317
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
I AQ A+T Y+V+ P+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 318 SGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 377
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H+ WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++ +
Sbjct: 378 HQTWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFL 435
Query: 240 QKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + K L+ VAP+P HM+ SW++++S
Sbjct: 436 SSTGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSS 475
>gi|3834304|gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
surA-hepA intergenic region yab0 from Escherichia coli
genome gb|AE000116, and to hypothetical YABO family
PF|00849 [Arabidopsis thaliana]
Length = 491
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 23/295 (7%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLV-------HRLDRDSSGILVMGRTQTSAT 53
+PV+G + I S+D LAA L++ E PRLV HRLDR++SG+LVMGRT+ S
Sbjct: 197 LPVKGNVPIHNSMDALAAAALSFGNDEGPRLVKLTFLGVHRLDRETSGLLVMGRTKESID 256
Query: 54 VLHSIFRE-KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 112
LHS+F + K ++S + + + + YWALV+G+P+ +G+ISAPL KV++D+GK+D
Sbjct: 257 YLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTD 316
Query: 113 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKH------QLRVHCAEVLG 166
R+ + ++Q A+T Y+V+ P +G +W++L P+T RKH QLRVHCAE LG
Sbjct: 317 RVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQPPSKKQLRVHCAEALG 376
Query: 167 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 226
TPIVGDYKYGW H++WKQ D+ + + P + GLD++ GS+L K P LHLH
Sbjct: 377 TPIVGDYKYGWFVHKRWKQMPQVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLH 434
Query: 227 CKEMTLPNVSQAIQKVQ------LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
C+EM LPN+++ + + L +G + K + L+ VA +PSHM+ SW++++S
Sbjct: 435 CREMVLPNIAKFLHVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 488
>gi|168014236|ref|XP_001759658.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689197|gb|EDQ75570.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/281 (44%), Positives = 174/281 (61%), Gaps = 29/281 (10%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + +S+D + L+Y+Y+E PRLVHRLD+++SG LV+GRT S L ++ R
Sbjct: 14 LAVQGGSDVVKSLDSMMEAALSYNYNEGPRLVHRLDKETSGALVLGRTHQSTVFLQALLR 73
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KT S+ R Y ALV+G P +G ISAPL KVV D+GK D++ VV+
Sbjct: 74 NKTEKISQAPG--------RCYLALVIGVPEKKEGRISAPLAKVVSDSGKLDKMRVVHGS 125
Query: 121 QIMSAQHAVTRYQVIKPSCH-GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+AQ A+T Y+V+ S G +WL+L PLTGRKHQ+RVHCAEVLG PIVGDYKYGW+
Sbjct: 126 H-PNAQEAITDYKVLGSSLFAGCSWLELRPLTGRKHQIRVHCAEVLGMPIVGDYKYGWRA 184
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
R W P+D ++D+ + GL ESG + +P LHLHC+++ LP+V+QA
Sbjct: 185 LRLWP---PTDRTEDTKSSV-------LGLR-ESGHVWSSKPYLHLHCRQLILPDVAQAF 233
Query: 240 -----QKVQLSSGCDVSK---LETLKLVAPLPSHMQRSWDV 272
++ +G VS E L+++APLP HM SW++
Sbjct: 234 KSQSRERSSAQTGARVSGSQFAEPLEIIAPLPPHMVVSWNM 274
>gi|302806002|ref|XP_002984751.1| hypothetical protein SELMODRAFT_121195 [Selaginella moellendorffii]
gi|300147337|gb|EFJ14001.1| hypothetical protein SELMODRAFT_121195 [Selaginella moellendorffii]
Length = 355
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 169/273 (61%), Gaps = 16/273 (5%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF- 59
+PVQGG + RS+ + + L ++Y EPPRLVHRLD+D SG++++GRT S + S
Sbjct: 56 LPVQGGSKVERSLVSMMSLALQFEYKEPPRLVHRLDKDVSGVMILGRTYESTVKIQSFLC 115
Query: 60 -REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
++ + + + L R Y ALV+G+P KG ISAPL K+V+++GKSDR+ +
Sbjct: 116 SKDNLMPSVITTQGSVGKGLDRKYIALVIGSPTADKGFISAPLLKMVLEDGKSDRVLIAA 175
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + +A A+T YQV+K S G TWL+L PLTGRKHQLRVHCA+ LG PIVGD KYG+
Sbjct: 176 DPKSENAIPAITEYQVLKRSVLGCTWLQLRPLTGRKHQLRVHCAQGLGLPIVGDMKYGFN 235
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
TH+KW ++ N P++ + +GS++ K P LHLH +E+T+P + +
Sbjct: 236 THKKWMA------ERNMNTVDPQDIKARNKM---AGSVVSKNPLLHLHSRELTIPRLRKK 286
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWD 271
V G D E ++ VAPLP+HM+ SW+
Sbjct: 287 PGAVDF--GLDP---ERMRFVAPLPTHMESSWE 314
>gi|302808237|ref|XP_002985813.1| hypothetical protein SELMODRAFT_123269 [Selaginella moellendorffii]
gi|300146320|gb|EFJ12990.1| hypothetical protein SELMODRAFT_123269 [Selaginella moellendorffii]
Length = 355
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 169/273 (61%), Gaps = 16/273 (5%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF- 59
+PVQGG + RS+ + + L ++Y EPPRLVHRLD+D SG++++GRT S + S
Sbjct: 56 LPVQGGSKVERSLVSMMSLALQFEYKEPPRLVHRLDKDVSGVMILGRTYESTVKIQSFLC 115
Query: 60 -REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
++ + + + L R Y ALV+G+P KG ISAPL K+V+++GKSDR+ +
Sbjct: 116 SKDNLMPSVITIQGSVGKGLDRKYIALVIGSPTADKGFISAPLLKMVLEDGKSDRVLIAA 175
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + +A A+T YQV+K S G TWL+L PLTGRKHQLRVHCA+ LG PIVGD KYG+
Sbjct: 176 DPKSENAIPAITEYQVLKRSVLGCTWLQLRPLTGRKHQLRVHCAQGLGLPIVGDMKYGFN 235
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
TH+KW ++ N P++ + +GS++ K P LHLH +E+T+P + +
Sbjct: 236 THKKWMA------ERNMNTVDPQDIKARNKM---AGSVVSKNPLLHLHSRELTIPRLRKK 286
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWD 271
V G D E ++ VAPLP+HM+ SW+
Sbjct: 287 PGAVDF--GLDP---ERMRFVAPLPTHMESSWE 314
>gi|293331663|ref|NP_001167875.1| uncharacterized protein LOC100381582 [Zea mays]
gi|223944581|gb|ACN26374.1| unknown [Zea mays]
Length = 237
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 150/236 (63%), Gaps = 7/236 (2%)
Query: 45 MGRTQTSATVLHSIFREKTFSASKEDNDNEK-RILQRWYWALVVGTPRCSKGVISAPLGK 103
MGRT+ S T LH + + + N+ + YWALV+GTP+ +GVISAP+ K
Sbjct: 1 MGRTKESFTRLHWLLTSVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISK 60
Query: 104 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
V++D+GK++R+ + + I AQ A+T Y+V+ P+ +G +W++L PLTGRKHQLRVHCAE
Sbjct: 61 VLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAE 120
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 223
LGTPIVGDYKYGW H+ WKQ D + E P + GL+++ GS+L K P L
Sbjct: 121 ALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLL 178
Query: 224 HLHCKEMTLPNVSQAIQKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
HLHC+EM +PN+++ + + + K L+ VAP+P HM+ SW++++S
Sbjct: 179 HLHCREMVIPNIAKFLSSTGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSS 234
>gi|242079953|ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
gi|241941095|gb|EES14240.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
Length = 439
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 160/279 (57%), Gaps = 44/279 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+L
Sbjct: 198 VPMKGHLPVHNSMDVLAAAALSYGNKEGPKL----------------------------- 228
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
T++ + E + YWALV+GTP+ +GVI AP+ KV++D+GK++R+ + +
Sbjct: 229 --TWNKACEAYVQK-------YWALVIGTPKEREGVICAPISKVLLDDGKAERVILAHPS 279
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
I AQ A+T Y+V+ P+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H
Sbjct: 280 GIDGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 339
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++ +
Sbjct: 340 QTWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLS 397
Query: 241 KV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + K L+ VAP+P HM+ SW++++S
Sbjct: 398 STGEWHENGAPWAKEKPNLLRFVAPMPPHMKISWNIMSS 436
>gi|414884642|tpg|DAA60656.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 503
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 122/174 (70%), Gaps = 4/174 (2%)
Query: 103 KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA 162
+VV+ +G+S+R+TV S Q A+T Y+VI+ GYTWL+L P TGRKHQLRVHCA
Sbjct: 330 EVVLQDGRSERLTVCAGSNTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCA 389
Query: 163 EVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPR 222
EVLGTPIVGDYKYG Q H+ W P + + ++E+ K++ L FGL L GS+ E+QP+
Sbjct: 390 EVLGTPIVGDYKYGRQAHQNWM---PLPMPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQ 446
Query: 223 LHLHCKEMTLPNVSQAIQKVQLSSG-CDVSKLETLKLVAPLPSHMQRSWDVLNS 275
LHLHCK+M LP++S A+Q+++ S D S LE L VAPLP HMQ SW +L S
Sbjct: 447 LHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPLHMQLSWKILLS 500
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P VHRLDRD SG+LV+GRTQ SA+++H+IFREKT A D +++LQR Y ALV+G
Sbjct: 196 PVQVHRLDRDCSGVLVLGRTQFSASLMHAIFREKTADAL---GDGTQQVLQRKYVALVIG 252
Query: 89 TPRCSKGVISAPLGK 103
PR KG++SAPL K
Sbjct: 253 RPRHPKGLLSAPLAK 267
>gi|115477922|ref|NP_001062556.1| Os09g0103500 [Oryza sativa Japonica Group]
gi|75117672|sp|Q69K07.1|PUS4_ORYSJ RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|50725212|dbj|BAD34146.1| ribosomal large subunit pseudouridine synthase C-like [Oryza sativa
Japonica Group]
gi|51091882|dbj|BAD36694.1| ribosomal large subunit pseudouridine synthase C-like [Oryza sativa
Japonica Group]
gi|113630789|dbj|BAF24470.1| Os09g0103500 [Oryza sativa Japonica Group]
Length = 448
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 4/156 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA+ + SE PRLVHRLDRD SGILV+GR Q S ++LH+IFR
Sbjct: 194 MPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFR 252
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+T+ +
Sbjct: 253 EKTADALA---DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASS 309
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 156
S Q A+T Y+VI+ GYTWL+L P TGRKHQ
Sbjct: 310 NAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345
>gi|414884643|tpg|DAA60657.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 549
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 50/220 (22%)
Query: 103 KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH---------------------- 140
+VV+ +G+S+R+TV S Q A+T Y+VI+
Sbjct: 330 EVVLQDGRSERLTVCAGSNTASVQDALTEYRVIESFPQDIKSDVDRNKFVQVMGVGIGSV 389
Query: 141 ------------------------GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 390 SSKICGAVKLLLVKSTTICLLMILGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYG 449
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
Q H+ W P + + ++E+ K++ L FGL L GS+ E+QP+LHLHCK+M LP++S
Sbjct: 450 RQAHQNWM---PLPMPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQLHLHCKQMILPDIS 506
Query: 237 QAIQKVQLSSG-CDVSKLETLKLVAPLPSHMQRSWDVLNS 275
A+Q+++ S D S LE L VAPLP HMQ SW +L S
Sbjct: 507 AAMQQLRSSDADHDFSDLEKLSFVAPLPLHMQLSWKILLS 546
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P VHRLDRD SG+LV+GRTQ SA+++H+IFREKT A D +++LQR Y ALV+G
Sbjct: 196 PVQVHRLDRDCSGVLVLGRTQFSASLMHAIFREKTADAL---GDGTQQVLQRKYVALVIG 252
Query: 89 TPRCSKGVISAPLGK 103
PR KG++SAPL K
Sbjct: 253 RPRHPKGLLSAPLAK 267
>gi|224129476|ref|XP_002328726.1| predicted protein [Populus trichocarpa]
gi|222839024|gb|EEE77375.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 104 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
V++D+GK++R+ + + + ++ AVT Y+V+ P+ +G +W++L PLT RKHQLRVHCAE
Sbjct: 1 VLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAE 60
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 223
LGTPIVGDYKYGW HR+WKQ D+ S + P + G+D++ GS+L K P L
Sbjct: 61 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGK--PYKLRWPEGVDIQKGSVLAKVPLL 118
Query: 224 HLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET----LKLVAPLPSHMQRSWDVLNS 275
HLHC+E+ LPN+++ + + S L T L+ VA +PSHM+ SW++++S
Sbjct: 119 HLHCRELVLPNIAKFLDVLDGKSENVHPALSTRPDLLRFVASMPSHMKISWNLMSS 174
>gi|356554056|ref|XP_003545365.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 3,
mitochondrial-like [Glycine max]
Length = 228
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 38/222 (17%)
Query: 84 ALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYT 143
ALV+GTP+ +G+I APL KV++++GK+ R+ + ++ + Q AVT ++V+ P +G +
Sbjct: 12 ALVIGTPKEKEGIIHAPLSKVLLNDGKTXRMILAHHSSVEPCQGAVTEHRVLGPKINGCS 71
Query: 144 WLKLSPLTGR--------------------------KHQLRVHCAEVLGTPIVGDYKYGW 177
W++L PLTG + LRVHCAE LGTPIVGDYKYGW
Sbjct: 72 WVELCPLTGSIRLSLEYVVESPTGGGSGLSFCSCKARTLLRVHCAEALGTPIVGDYKYGW 131
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
H +WKQ D+ + + P+ GLD++ GS+L K P LHLHC+E+ LPN+++
Sbjct: 132 FVHSRWKQMPRVDIEPTTGK--PE------GLDVQKGSVLSKVPLLHLHCRELVLPNIAK 183
Query: 238 AIQKVQLSSGCDVSKL----ETLKLVAPLPSHMQRSWDVLNS 275
+ + SS + L + L+ VA +PSHM+ SW++++S
Sbjct: 184 FLHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSS 225
>gi|163760834|ref|ZP_02167913.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
gi|162281878|gb|EDQ32170.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
Length = 329
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R++D++ E PRLVHRLDRD++G+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRNVDDMLEAWRNKK-GEKPRLVHRLDRDTAGVLVVARTRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E+T ++ YWALV G PR +G IS L K D+G DR+ V +
Sbjct: 170 ERT--------------TKKTYWALVTGVPRDREGKISTWLVKEATDDG--DRMRVAKHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y++I+ + WL+L P TGR HQLRVHC LG PI+GD KY
Sbjct: 214 EP-GADHAVSYYRIIEKAAQNLCWLELEPYTGRTHQLRVHCLH-LGHPILGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G + Q RLHL + +++P+
Sbjct: 267 ----------YDHDKNREFP-------------GGM---QKRLHLLARHISVPHPDGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + APLP HM +SW++L
Sbjct: 299 --------------RLSVTAPLPPHMVQSWNLLG 318
>gi|398828315|ref|ZP_10586516.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398218350|gb|EJN04860.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 328
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 135/274 (49%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVNRHVDDMLEAWRNKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + I+ L K ++G DR+ VV +
Sbjct: 170 E--------------RETKKTYWALVKGIPRKREDKIATWLAKEATEDG--DRMRVVPHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HA++ Y+VI+ + TWL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 214 EPDS-DHAISYYRVIESAGQVLTWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADTNWSFP-------------GGI---QNRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM ++W++L
Sbjct: 300 ---------------IDVTAPLPPHMVQTWNLLG 318
>gi|328865280|gb|EGG13666.1| putative ribosomal large subunit pseudouridine synthase C protein
[Dictyostelium fasciculatum]
Length = 720
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 147/305 (48%), Gaps = 80/305 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+++ +D + + L ++ E PRLVHRLD+D+SGIL++GR +T+ T + F
Sbjct: 451 LSVQGGTGLKKHLD-MMLSHLKFEADETPRLVHRLDKDTSGILILGRNRTATTAMADKFE 509
Query: 61 EK--------------------------------TFSASKEDNDNEKRILQRWYWALVVG 88
+K T + E+ ++ I+ + YWAL+
Sbjct: 510 QKLKRRSDREVKKEKKDKKDDSNNNNNNNYSSKKTTKTTVEEMKDDNSII-KTYWALLTS 568
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
TP +G I APL K+V +NG+ V + A+ A+T Y+VI+ S +++ L
Sbjct: 569 TPNPREGRIRAPLQKIV-ENGQEK--VVATKETGNGAKLAITEYRVIENSMADTSFVALW 625
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
P TGR HQLRVHCA +LG+PI+GD KYG K+ T F
Sbjct: 626 PETGRTHQLRVHCASILGSPIIGDVKYGG-----------------------KKSTAPF- 661
Query: 209 LDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQR 268
++ +K LHLH + +VQ + +KL + ++APLP +Q
Sbjct: 662 -----ENVFDKNIPLHLHAR------------RVQFYHPINTNKL--VDVIAPLPPTLQD 702
Query: 269 SWDVL 273
SW +L
Sbjct: 703 SWSIL 707
>gi|162148058|ref|YP_001602519.1| ribosomal large subunit pseudouridine synthase A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542674|ref|YP_002274903.1| RluA family pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786635|emb|CAP56217.1| putative ribosomal large subunit pseudouridine synthase A
[Gluconacetobacter diazotrophicus PAl 5]
gi|209530351|gb|ACI50288.1| pseudouridine synthase, RluA family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 325
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 128/274 (46%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG GI +D + D PRLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 108 LPVQGGPGIIHHVDAMLDGLKDQDDDPRPRLVHRIDRDTSGLLLLARTPGVAAKLAASFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ YWA+VVG P + GVI PL ++ G +TVV +
Sbjct: 168 --------------GRDVRKTYWAIVVGRPSPASGVIDQPLARLGAGPGA---LTVVASR 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA++ Y+V+ + +WL LSPLTGR HQLRVHC E LGTPI+GD KYG T
Sbjct: 211 KDADAAHALSEYEVLDAAGRKLSWLALSPLTGRTHQLRVHC-EALGTPILGDPKYGGDT- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
HP RLHLH + + LP+ +
Sbjct: 269 -----AHPEGFVD----------------------------RLHLHARTLDLPHPAGG-- 293
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LPSHM+ ++ L
Sbjct: 294 --------------RLVVSADLPSHMRETFRQLG 313
>gi|408380456|ref|ZP_11178040.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
gi|407745669|gb|EKF57201.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
Length = 329
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGLNRHIDKML-EAWTSRKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E+ + K+I YW+LV G PR + IS L K D G R+ D
Sbjct: 170 ER----------DTKKI----YWSLVKGVPRKHEDKISTWLTKDQTDEGDRMRVCRHGED 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y+VI + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 ---GADHAVTYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + LP+ +
Sbjct: 267 ----------FVDDHNWDFP-------------GGV---QKRLHLHARSIDLPHPNGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM ++W++L
Sbjct: 299 --------------RLKVTAPLPPHMVQTWNLLG 318
>gi|239831992|ref|ZP_04680321.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|444308588|ref|ZP_21144233.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
gi|239824259|gb|EEQ95827.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|443488171|gb|ELT50928.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
Length = 326
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRNKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKDQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + TWL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLTWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|114704677|ref|ZP_01437585.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
gi|114539462|gb|EAU42582.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
Length = 328
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ E PRLVHRLDRD+SGILV+ RT+ +AT L FR
Sbjct: 113 LAVQGGSGVARHVDDMLEAWRNKK-GEKPRLVHRLDRDTSGILVVARTRGAATALTKAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWA+V G P +G IS L K +G RI ++
Sbjct: 172 E--------------RDTKKLYWAVVKGVPAKKEGRISTYLKKEQTPDGDRMRIARHGDE 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+VI + WL+L P TGR HQLRVH A + G PI+GD KY
Sbjct: 218 ---GADHALSHYRVIDQVAQNFAWLELEPHTGRTHQLRVHAAHI-GHPILGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N E P G + Q RLHLH + + +P+ S +
Sbjct: 269 ----------FEHDTNWEFP-------------GGV---QMRLHLHARRLVIPHPSGGM- 301
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ +APLP HM++++++
Sbjct: 302 ---------------IDQIAPLPQHMRQTFNLFG 320
>gi|418937635|ref|ZP_13491253.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
gi|375055679|gb|EHS51921.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
Length = 340
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ +T+ +A L + FR
Sbjct: 121 LAVQGGSGLVRHIDKML-EAWTSKKGEKPRLVHRLDRDTSGVLVVAKTRGAAQKLTAAFR 179
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR IS L K D G R+ D
Sbjct: 180 E--------------RDTKKTYWALVKGVPRKQSDKISTWLVKDQTDEGDRMRVCKHGED 225
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + H + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 226 ---GADHAISYYRVLETAAHTFAWLEMEPYTGRTHQLRVH-ALYMGHPIIGDPKY----- 276
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+D N + P G + Q RLHLH + + +P+
Sbjct: 277 ----------FDEDHNWDFP-------------GGV---QKRLHLHARHIDIPHPDGG-- 308
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM ++W++
Sbjct: 309 --------------RLKVTAPLPPHMVQTWNLFG 328
>gi|304391488|ref|ZP_07373430.1| rRNA pseudouridylate synthase C [Ahrensia sp. R2A130]
gi|303295717|gb|EFL90075.1| rRNA pseudouridylate synthase C [Ahrensia sp. R2A130]
Length = 338
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 136/273 (49%), Gaps = 65/273 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI RS+D + + L + PRL HRLDRD+SG+LV+ +T+ +A L FR
Sbjct: 114 LAVQGGSGISRSVDSMLES-LRDKAGQKPRLCHRLDRDTSGVLVVAKTRGAAAALTKSFR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++T Q+ YWALV G PR +G IS L K ++G DR+ V +
Sbjct: 173 QRT--------------TQKTYWALVRGIPRQKEGRISTYLVKEQTEDG--DRMRVAKHG 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+VI + +W++LSP TGR HQLRVH A+ +G PI+GD KY
Sbjct: 217 E-RHADHAVSFYRVIDSNPRTVSWVELSPHTGRTHQLRVH-ADHIGHPIIGDNKY----- 269
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
N E+P G I Q RLHLH + + +P+ +
Sbjct: 270 -----------FSTENWEMP-------------GGI---QKRLHLHARRIRIPHPDE--- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
TL + APLP HM +SW++
Sbjct: 300 -----------NQPTLDVTAPLPPHMVQSWNLF 321
>gi|163843268|ref|YP_001627672.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|163673991|gb|ABY38102.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
Length = 326
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVLARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|384211367|ref|YP_005600449.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384408473|ref|YP_005597094.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|384445066|ref|YP_005603785.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|326409020|gb|ADZ66085.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|326538730|gb|ADZ86945.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
gi|349743057|gb|AEQ08600.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 331
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 116 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 175 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 219 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 271
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 272 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 304
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 305 ---------------IDVTAPLPPHMVQSWNLLG 323
>gi|153009413|ref|YP_001370628.1| RluA family pseudouridine synthase [Ochrobactrum anthropi ATCC
49188]
gi|404319116|ref|ZP_10967049.1| RluA family pseudouridine synthase [Ochrobactrum anthropi CTS-325]
gi|151561301|gb|ABS14799.1| pseudouridine synthase, RluA family [Ochrobactrum anthropi ATCC
49188]
Length = 326
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVSRHVDGMLEAWRNKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTTAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L + +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVREQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + TWL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLTWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
T+ + APLP HM +SW++L
Sbjct: 299 --------------TIDVTAPLPPHMVQSWNLLG 318
>gi|15965142|ref|NP_385495.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti 1021]
gi|334315929|ref|YP_004548548.1| RluA family pseudouridine synthase [Sinorhizobium meliloti AK83]
gi|384529100|ref|YP_005713188.1| RluA family pseudouridine synthase [Sinorhizobium meliloti BL225C]
gi|384536620|ref|YP_005720705.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|407720329|ref|YP_006839991.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|418405277|ref|ZP_12978685.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|433613160|ref|YP_007189958.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
gi|15074322|emb|CAC45968.1| Probable ribosomal large subunit pseudouridine synthase C
[Sinorhizobium meliloti 1021]
gi|333811276|gb|AEG03945.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti BL225C]
gi|334094923|gb|AEG52934.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti AK83]
gi|336033512|gb|AEH79444.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|359500766|gb|EHK73420.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|407318561|emb|CCM67165.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|429551350|gb|AGA06359.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
Length = 330
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGVNRHIDKML-EAWTSQKGEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 172 E--------------RDTKKTYWALVRGVPRKREDKISTWLVKEPTPDGDRVRIAKHGED 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 218 ---GADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N P G + Q RLHLH + + +P+ +
Sbjct: 269 ----------FEADVNWTFP-------------GGM---QNRLHLHARHIDIPHPNGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 301 --------------RLKITAPLPQHMVQSWNLLG 320
>gi|17987266|ref|NP_539900.1| ribosomal large subunit pseudouridine synthase C [Brucella
melitensis bv. 1 str. 16M]
gi|225627477|ref|ZP_03785514.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|17982942|gb|AAL52164.1| ribosomal large subunit pseudouridine synthase c [Brucella
melitensis bv. 1 str. 16M]
gi|225617482|gb|EEH14527.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
Length = 343
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 128 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 186
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 187 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 230
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 231 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 283
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 284 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 316
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 317 ---------------IDVTAPLPPHMVQSWNLLG 335
>gi|148560154|ref|YP_001258940.1| ribosomal large subunit pseudouridine synthase C [Brucella ovis
ATCC 25840]
gi|148371411|gb|ABQ61390.1| ribosomal large subunit pseudouridine synthase C [Brucella ovis
ATCC 25840]
Length = 318
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 103 LAVQGGSGVTRHIDGMLEAWRSTK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 161
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 162 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 205
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 206 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 258
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 259 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 291
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 292 ---------------IDVTAPLPPHMVQSWNLLG 310
>gi|52430461|ref|YP_089633.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|376280674|ref|YP_005154680.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
VBI22]
gi|384224668|ref|YP_005615832.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|47524242|gb|AAT34905.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|343382848|gb|AEM18340.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|358258273|gb|AEU06008.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
VBI22]
Length = 326
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|306840487|ref|ZP_07473246.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
gi|306289502|gb|EFM60720.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
Length = 284
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 69 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 127
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 128 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 171
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 172 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 224
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 225 ----------FEADQNWEFP-------------GGI---QKRLHLHARHIRIPNPSGGI- 257
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 258 ---------------IDVTAPLPPHMVQSWNLLG 276
>gi|261752304|ref|ZP_05996013.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261742057|gb|EEY29983.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
Length = 326
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|265984067|ref|ZP_06096802.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306838360|ref|ZP_07471205.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
gi|306843875|ref|ZP_07476470.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|264662659|gb|EEZ32920.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306275630|gb|EFM57354.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|306406500|gb|EFM62734.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
Length = 326
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|225852505|ref|YP_002732738.1| RluA family pseudouridine synthase [Brucella melitensis ATCC 23457]
gi|256264005|ref|ZP_05466537.1| pseudouridine synthase [Brucella melitensis bv. 2 str. 63/9]
gi|256369422|ref|YP_003106930.1| ribosomal large subunit pseudouridine synthase C [Brucella microti
CCM 4915]
gi|260564005|ref|ZP_05834491.1| pseudouridine synthase [Brucella melitensis bv. 1 str. 16M]
gi|261213987|ref|ZP_05928268.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261218659|ref|ZP_05932940.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261222167|ref|ZP_05936448.1| pseudouridine synthase [Brucella ceti B1/94]
gi|261314272|ref|ZP_05953469.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261317634|ref|ZP_05956831.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261321843|ref|ZP_05961040.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261758188|ref|ZP_06001897.1| pseudouridine synthase [Brucella sp. F5/99]
gi|265988669|ref|ZP_06101226.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|265991083|ref|ZP_06103640.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|265994920|ref|ZP_06107477.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|265998132|ref|ZP_06110689.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|340790618|ref|YP_004756083.1| ribosomal large subunit pseudouridine synthase C [Brucella
pinnipedialis B2/94]
gi|225640870|gb|ACO00784.1| pseudouridine synthase, RluA family protein [Brucella melitensis
ATCC 23457]
gi|255999582|gb|ACU47981.1| ribosomal large subunit pseudouridine synthase C [Brucella microti
CCM 4915]
gi|260154021|gb|EEW89113.1| pseudouridine synthase [Brucella melitensis bv. 1 str. 16M]
gi|260915594|gb|EEX82455.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|260920751|gb|EEX87404.1| pseudouridine synthase [Brucella ceti B1/94]
gi|260923748|gb|EEX90316.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261294533|gb|EEX98029.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261296857|gb|EEY00354.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261303298|gb|EEY06795.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261738172|gb|EEY26168.1| pseudouridine synthase [Brucella sp. F5/99]
gi|262552600|gb|EEZ08590.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|262766033|gb|EEZ11822.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|263001867|gb|EEZ14442.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|263094149|gb|EEZ18071.1| pseudouridine synthase [Brucella melitensis bv. 2 str. 63/9]
gi|264660866|gb|EEZ31127.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|340559077|gb|AEK54315.1| ribosomal large subunit pseudouridine synthase C [Brucella
pinnipedialis B2/94]
Length = 326
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|281204012|gb|EFA78208.1| Probable ribosomal large subunit pseudouridine synthase C protein
[Polysphondylium pallidum PN500]
Length = 702
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 142/306 (46%), Gaps = 84/306 (27%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+++ +D + + L ++ E PRL HRLDR++SGIL++ RT+ +AT + F
Sbjct: 440 LSVQGGTGLKKHLD-MMMSHLKFELEEAPRLCHRLDRETSGILILARTRKAATAMADKFE 498
Query: 61 EK-------------------------------TFSASKEDNDNEKRILQRWYWALVVGT 89
K S +++ + +++ YWAL+ T
Sbjct: 499 MKLKRRTTRQDRDKKDKQKKDGSGSGSSSKKDKDRSGGEDEELRDDNGIRKTYWALLTST 558
Query: 90 PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSP 149
P +G I APL KVV D + + + + A+ A+T Y+V++ S +++ L P
Sbjct: 559 PNPKEGRIRAPLKKVVQD---GEEMVIATKETGDGAKLAITEYKVVESSLTNASFVSLWP 615
Query: 150 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGL 209
TGR HQLRVHCA +L +PIVGD KYG K ++ F
Sbjct: 616 ETGRTHQLRVHCASILSSPIVGDKKYG------------------------KNDSVAF-- 649
Query: 210 DLESGSILEKQPRLHLHCK--EMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQ 267
S+L K+ LHLH + E P ++ I +VAPLP +++
Sbjct: 650 ----QSVLGKKIPLHLHARRVEFFHPETNKKID-----------------VVAPLPKNLE 688
Query: 268 RSWDVL 273
SWD+L
Sbjct: 689 NSWDML 694
>gi|260754735|ref|ZP_05867083.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260757958|ref|ZP_05870306.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260761781|ref|ZP_05874124.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883756|ref|ZP_05895370.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|297248324|ref|ZP_06932042.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 5 str. B3196]
gi|376273272|ref|YP_005151850.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
A13334]
gi|260668276|gb|EEX55216.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260672213|gb|EEX59034.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674843|gb|EEX61664.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260873284|gb|EEX80353.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|297175493|gb|EFH34840.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 5 str. B3196]
gi|363400878|gb|AEW17848.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
A13334]
Length = 331
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 116 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 175 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 219 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 271
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 272 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 304
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 305 ---------------IDVTAPLPLHMVQSWNLLG 323
>gi|390450950|ref|ZP_10236534.1| RluA family pseudouridine synthase [Nitratireductor aquibiodomus
RA22]
gi|389661712|gb|EIM73311.1| RluA family pseudouridine synthase [Nitratireductor aquibiodomus
RA22]
Length = 328
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + L E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVNRHVDGML-EALRNKKGEKPRLVHRLDRDTSGVLVVARTRQAAMRLAEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P + IS L K +G DR+ VV +
Sbjct: 170 --------------ARDTKKTYWALVKGVPNRDEARISTWLAKEQTPDG--DRMRVVKHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y+V++ + +WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSNYRVVERAGSALSWLEMEPYTGRTHQLRVHAA-YIGCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +P+
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIVIPHPGGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM++SW++L
Sbjct: 299 --------------KIDVTAPLPPHMRQSWNLLG 318
>gi|150396240|ref|YP_001326707.1| RluA family pseudouridine synthase [Sinorhizobium medicae WSM419]
gi|150027755|gb|ABR59872.1| pseudouridine synthase, RluA family [Sinorhizobium medicae WSM419]
Length = 330
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGVNRHIDKML-EAWTSQKGEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS + K +G RI D
Sbjct: 172 E--------------RDTKKTYWALVRGVPRKREDKISTWVVKEQTPDGDRVRIAKHGED 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 218 ---GADHAISFYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N P G + Q RLHLH + + +P+ +
Sbjct: 269 ----------FEADVNWTFP-------------GGM---QNRLHLHARHIDIPHPNGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 301 --------------RLKVTAPLPQHMMQSWNLLG 320
>gi|237815424|ref|ZP_04594422.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|237790261|gb|EEP64471.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
Length = 343
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 128 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 186
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 187 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 230
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 231 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 283
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 284 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 316
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 317 ---------------IDVTAPLPLHMVQSWNLLG 335
>gi|398353276|ref|YP_006398740.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
gi|390128602|gb|AFL51983.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
Length = 330
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGVNRHIDKML-EAWTSQKGEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + +S L K +G RI +D
Sbjct: 172 E--------------RDTRKIYWSLVKGVPRKREDRVSTWLVKEQTPDGDRMRIAKHGDD 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y++I+ + +WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 218 ---GADHAISYYRIIEQAGQNLSWLEMEPYTGRTHQLRVHAAHI-GHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N P G + Q RLHLH + + +P+ +
Sbjct: 269 ----------FDADVNWTFP-------------GGM---QNRLHLHARSIDIPHPNGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 301 --------------RLKITAPLPPHMVQSWNLLG 320
>gi|409437486|ref|ZP_11264600.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
gi|408750914|emb|CCM75758.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
Length = 330
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDKML-EAWTSAKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G RI D
Sbjct: 170 E--------------RDTKKTYWSLVKGVPRKHEDKISTWLVKEATPDGDRMRIAKHGED 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+VI+ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 ---GADHAVSYYRVIETAAQRLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ S
Sbjct: 267 ----------FDDDPNWDFP-------------GGV---QKRLHLHARHIDIPHPSGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 299 --------------RLRITAPLPPHMLQTWNLLG 318
>gi|430003654|emb|CCF19443.1| Pseudouridine synthase [Rhizobium sp.]
Length = 329
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDQML-DAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEQTPDG--DRMRIAKHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 214 E-AGADHAVSFYRVLETAAQTMAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N P G I Q RLHLH + + +P+ S
Sbjct: 267 ----------FDDDINWPFP-------------GGI---QKRLHLHARHIDIPHPSGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 299 --------------RLKVTAPLPPHMVQSWNLLG 318
>gi|294852409|ref|ZP_06793082.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
gi|294820998|gb|EFG37997.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
Length = 331
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 116 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 175 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++++ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 219 EPDS-DHAVSYYRILEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 271
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 272 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 304
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ ++APLP HM +SW++L
Sbjct: 305 ---------------IDVMAPLPPHMVQSWNLLG 323
>gi|376274261|ref|YP_005114700.1| RluA family pseudouridine synthase [Brucella canis HSK A52141]
gi|363402828|gb|AEW13123.1| pseudouridine synthase, RluA family protein [Brucella canis HSK
A52141]
Length = 331
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 116 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 175 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 219 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 271
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 272 ----------FEVDQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 304
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 305 ---------------IDVTAPLPPHMVQSWNLLG 323
>gi|62289923|ref|YP_221716.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 1 str. 9-941]
gi|82699851|ref|YP_414425.1| RNA-binding protein S4 [Brucella melitensis biovar Abortus 2308]
gi|189024165|ref|YP_001934933.1| Pseudouridine synthase [Brucella abortus S19]
gi|260545328|ref|ZP_05821069.1| pseudouridine synthase [Brucella abortus NCTC 8038]
gi|423166894|ref|ZP_17153597.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|423170732|ref|ZP_17157407.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|423173186|ref|ZP_17159857.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|423177527|ref|ZP_17164173.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|423180162|ref|ZP_17166803.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|423183294|ref|ZP_17169931.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|423185766|ref|ZP_17172380.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|423188902|ref|ZP_17175512.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|62196055|gb|AAX74355.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 1 str. 9-941]
gi|82615952|emb|CAJ10975.1| RNA-binding S4:Pseudouridine synthase:Pseudouridine synthase,
Rlu:Pseudouridine synthase, RluD [Brucella melitensis
biovar Abortus 2308]
gi|189019737|gb|ACD72459.1| Pseudouridine synthase [Brucella abortus S19]
gi|260096735|gb|EEW80610.1| pseudouridine synthase [Brucella abortus NCTC 8038]
gi|374539310|gb|EHR10814.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|374543125|gb|EHR14609.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|374543741|gb|EHR15223.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|374548726|gb|EHR20173.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|374549357|gb|EHR20800.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|374550009|gb|EHR21450.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|374558560|gb|EHR29953.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|374559857|gb|EHR31242.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
Length = 326
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPLHMVQSWNLLG 318
>gi|424887740|ref|ZP_18311343.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173289|gb|EJC73333.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 330
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVSRHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAISFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q +LHLH + + +P+ S
Sbjct: 268 ----------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLPSHM ++W++L
Sbjct: 300 --------------RLRVSAPLPSHMVQTWNLLG 319
>gi|161618953|ref|YP_001592840.1| RluA family pseudouridine synthase [Brucella canis ATCC 23365]
gi|260566460|ref|ZP_05836930.1| pseudouridine synthase [Brucella suis bv. 4 str. 40]
gi|261754961|ref|ZP_05998670.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|161335764|gb|ABX62069.1| pseudouridine synthase, RluA family [Brucella canis ATCC 23365]
gi|260155978|gb|EEW91058.1| pseudouridine synthase [Brucella suis bv. 4 str. 40]
gi|261744714|gb|EEY32640.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
Length = 326
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEVDQNWEFP-------------GGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|116252313|ref|YP_768151.1| ribosomal large subunit pseudouridine synthase C [Rhizobium
leguminosarum bv. viciae 3841]
gi|115256961|emb|CAK08055.1| putative ribosomal large subunit pseudouridine synthase C
[Rhizobium leguminosarum bv. viciae 3841]
Length = 330
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 LAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q +LHLH + + +P+ S
Sbjct: 268 ----------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLPSHM ++W++L
Sbjct: 300 --------------RLRVSAPLPSHMVQTWNLLG 319
>gi|424895151|ref|ZP_18318725.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179378|gb|EJC79417.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 330
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAISFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q +LHLH + + +P+ S
Sbjct: 268 ----------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLPSHM ++W++L
Sbjct: 300 --------------RLRVSAPLPSHMVQTWNLLG 319
>gi|86357851|ref|YP_469743.1| pseudouridylate synthase, ribosomal large subunit C protein
[Rhizobium etli CFN 42]
gi|86281953|gb|ABC91016.1| pseudouridylate synthase, ribosomal large subunit C protein
[Rhizobium etli CFN 42]
Length = 317
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ ++ E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 97 LAVQGGSGVARHIDQMLEAWIS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 155
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G RI D
Sbjct: 156 E--------------RDTKKTYWSLVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED 201
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 202 ---GADHAVSYYRVVETAAQRLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 252
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q RLHLH + + +P+ S
Sbjct: 253 ----------FDDDPNWDFP-------------GGI---QKRLHLHARHIDIPHPSGG-- 284
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM +SW++L
Sbjct: 285 --------------RLRVTAPLPPHMVQSWNLLG 304
>gi|399036575|ref|ZP_10733609.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398065903|gb|EJL57515.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 316
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R+ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 97 LAVQGGSGVTRNIDKML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 155
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G R+ D
Sbjct: 156 E--------------RDTKKTYWSLVRGVPRKHEDKISTWLVKEATADGDRMRVAKHGED 201
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 202 ---GADHAISYYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 252
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+D N ++P G I Q RLHLH +++ +P+ S
Sbjct: 253 ----------FIEDPNWDVP-------------GGI---QKRLHLHARKIDIPHPSGG-- 284
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 285 --------------RLRVSAPLPPHMVQTWNLLG 304
>gi|190891935|ref|YP_001978477.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
etli CIAT 652]
gi|190697214|gb|ACE91299.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CIAT 652]
Length = 330
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 128/272 (47%), Gaps = 66/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FRE
Sbjct: 114 VQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE- 171
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWALV G PR + IS L K +G RI D
Sbjct: 172 -------------RDTKKTYWALVKGVPRKHEDKISTWLVKEATADGDRMRIAKHGED-- 216
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 -GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY------- 267
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D N + P G I Q +LHLH + + +P+ S
Sbjct: 268 --------FDDDPNWDFP-------------GGI---QKKLHLHARHIDIPHPSGG---- 299
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 ------------RLRVSAPLPPHMVQTWNLLG 319
>gi|381166027|ref|ZP_09875245.1| Pseudouridine synthase [Phaeospirillum molischianum DSM 120]
gi|380684759|emb|CCG40057.1| Pseudouridine synthase [Phaeospirillum molischianum DSM 120]
Length = 331
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 135/275 (49%), Gaps = 70/275 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + + L +D + PRLVHRLD+D+SG+L++GR+ + L ++F+
Sbjct: 110 LAVQGGTGMADNHLDAMLDVLRFDAPDRPRLVHRLDKDTSGVLLLGRSVGATAKLAALFK 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS-DRITVVNN 119
++ Q+ YWALV G P+ +G I APLGK+ GK +++ V
Sbjct: 170 SRS--------------AQKCYWALVAGVPKLRQGRIDAPLGKL---GGKGVEKMGVDEE 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
D +HAVT Y+++ + WL++ P TGR HQLR HC +LGTPI+GD KYG
Sbjct: 213 D----GRHAVTYYRIVDSALKRAAWLEMEPRTGRTHQLRAHCL-LLGTPILGDGKYG--- 264
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
KD+ E FGL +LHLH + + LP+
Sbjct: 265 ------------GKDAMIE-------GFGL----------SRKLHLHARALRLPHPRTG- 294
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L++VAPLP+H + +D+
Sbjct: 295 --------------KRLEVVAPLPAHFKTGFDLFG 315
>gi|402487861|ref|ZP_10834676.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
gi|401813029|gb|EJT05376.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
Length = 329
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 129/272 (47%), Gaps = 66/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FRE
Sbjct: 113 VQGGSGVARHIDQML-EAWTSPRGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE- 170
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 -------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIARHGED-- 215
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 -GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY------- 266
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D N + P G + Q +LHLH + + +P+ S
Sbjct: 267 --------FDDDPNWDFP-------------GGV---QKKLHLHARRIDIPHPSGG---- 298
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLPSHM ++W++L
Sbjct: 299 ------------RLRVSAPLPSHMVQTWNLLG 318
>gi|433775466|ref|YP_007305933.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433667481|gb|AGB46557.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 326
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R++D++ + E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVTRNVDDMLEAWRS-QKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P + IS L K +G DR+ + +
Sbjct: 170 --------------ARETKKTYWALVKGVPPKREDKISTWLIKEATPDG--DRVRIAAHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y++I+ + TWL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 214 E-KGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N + P G I Q RLHLH + + +P+ + +
Sbjct: 267 ----------FEADTNWDFP-------------GGI---QNRLHLHARRIIIPHPDKGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM++SW+++
Sbjct: 300 ---------------IDVTAPMPPHMRQSWNLIG 318
>gi|241204807|ref|YP_002975903.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858697|gb|ACS56364.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 330
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 LAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q +LHLH + + +P+ S
Sbjct: 268 ----------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP+HM ++W++L
Sbjct: 300 --------------RLRISAPLPAHMVQTWNLLG 319
>gi|407778993|ref|ZP_11126253.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
pacificus pht-3B]
gi|407299277|gb|EKF18409.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
pacificus pht-3B]
Length = 328
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 132/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ E PRLVHR+DRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVHRHVDDMLEAWRNKK-GEKPRLVHRIDRDTSGVLVVARTRQAAMRLAEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ +G IS L K +G DR+ V +
Sbjct: 170 --------------ARETKKTYWALVKGVPKQREGRISTWLVKEQTPDG--DRMRVTKHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + +WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 214 EPDS-DHAVSNYRLIEQAGMTLSWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P GL Q RLHLH + + +P+ Q
Sbjct: 267 ----------FEADQNWEFPG------GL----------QNRLHLHARRIVIPHPDQG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM++SW++L
Sbjct: 299 --------------RIDVTAPLPPHMRQSWNLLG 318
>gi|209549478|ref|YP_002281395.1| pseudouridine synthase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913830|ref|ZP_18337194.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535234|gb|ACI55169.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392850006|gb|EJB02527.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 329
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 128/272 (47%), Gaps = 66/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FRE
Sbjct: 113 VQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE- 170
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 -------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED-- 215
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA++ Y+VI+ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 -GADHAISFYRVIETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY------- 266
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D N + P G + Q +LHLH + + +P+ S
Sbjct: 267 --------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPSGG---- 298
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 299 ------------RLRVSAPLPPHMVQTWNLLG 318
>gi|254459621|ref|ZP_05073037.1| pseudouridine synthase, RluA family [Rhodobacterales bacterium
HTCC2083]
gi|206676210|gb|EDZ40697.1| pseudouridine synthase, RluA family [Rhodobacteraceae bacterium
HTCC2083]
Length = 347
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 60/278 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG G R +D L L YD+ E P+LVHRLD+D+SG+L++GRT+ + L + FR
Sbjct: 109 LPVQGGTGHARHVDGLL-DALMYDFEERPKLVHRLDKDTSGVLILGRTRRATADLTASFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
+ N ++I YWA + G P G I L K G+ +++ ++
Sbjct: 168 HR----------NTRKI----YWAAIAGVPNPRMGTIKYGLMKAPGHGARGEGEKMICIH 213
Query: 119 N---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
DQ A+ A+T Y V++ + +W L P+TGR HQLR H +E +G P+VGD KY
Sbjct: 214 PREVDQTEGAKRALTDYAVLETAGQRTSWCALIPITGRTHQLRAHMSE-MGHPVVGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G ++ L G + G L K +LHLH + + + +
Sbjct: 273 GGSG----------------------QENLGDGWGSQLGGDLSK--KLHLHARSLQIEHP 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
S TL + APLP HMQR+WD
Sbjct: 309 STKA---------------TLHITAPLPDHMQRTWDTF 331
>gi|357028779|ref|ZP_09090804.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
gi|355537479|gb|EHH06735.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
Length = 326
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R++D++ E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVTRNVDDMLEAWRNQK-GEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P + IS L K +G DR+ V +
Sbjct: 170 --------------ARETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--DRVRVAAHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+VI+ + TWL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 214 E-KGADHAVSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N + P G I Q RLHLH + + +P+ + +
Sbjct: 267 ----------FEADTNWDFP-------------GGI---QNRLHLHARRIVIPHPDKGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM++SW+++
Sbjct: 300 ---------------IDVTAPMPPHMRQSWNLIG 318
>gi|13470583|ref|NP_102152.1| ribosomal large subunit pseudouridine synthase C [Mesorhizobium
loti MAFF303099]
gi|14021325|dbj|BAB47938.1| ribosomal large subunit pseudouridine synthase C [Mesorhizobium
loti MAFF303099]
Length = 326
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R++D++ E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVTRNVDDMLEAWRNQK-GEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P + IS L K ++G DR+ V +
Sbjct: 170 --------------ARETKKTYWALVKGVPPKREDKISTWLIKEPTEDG--DRVRVAAHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y++I+ + TWL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 E-KGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N + P G I Q RLHLH + + +P+ + +
Sbjct: 267 ----------FEADTNWDFP-------------GGI---QNRLHLHARRIIIPHPDKGL- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM++SW+++
Sbjct: 300 ---------------IDVTAPMPPHMRQSWNLIG 318
>gi|227821788|ref|YP_002825758.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
gi|227340787|gb|ACP25005.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
Length = 330
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGVSRHIDKML-EAWTSQKGEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G RI +D
Sbjct: 172 E--------------RDTRKIYWSLVKGVPRKREDRISTWLVKEQTPDGDRMRIAKHGDD 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 218 ---GADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N P G I Q RLHLH + + +P+ +
Sbjct: 269 ----------FEADVNWTFP-------------GGI---QNRLHLHARCIDIPHPNGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 301 --------------RLKVTAPLPPHMVQSWNLLG 320
>gi|222086089|ref|YP_002544621.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221723537|gb|ACM26693.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 332
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGLTRHLDKML-EAWTSKKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G RI D
Sbjct: 172 E--------------RDTKKTYWSLVKGVPRKHEDKISTWLVKEATADGDRMRIAKHGED 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA+T Y+V++ + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 218 ---GADHAITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ +
Sbjct: 269 ----------FDDDHNWDFP-------------GGV---QNRLHLHARHIDIPHPNGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 301 --------------RLRITAPLPPHMVQTWNLLG 320
>gi|424870801|ref|ZP_18294463.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393166502|gb|EJC66549.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 330
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 129/272 (47%), Gaps = 66/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FRE
Sbjct: 114 VQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRE- 171
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWALV G PR + IS L K +G RI D
Sbjct: 172 -------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED-- 216
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 -GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY------- 267
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D N + P G + Q +LHLH + + +P+ +
Sbjct: 268 --------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPTGG---- 299
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLPSHM ++W++L
Sbjct: 300 ------------RLRVSAPLPSHMVQTWNLLG 319
>gi|417104037|ref|ZP_11961267.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CNPAF512]
gi|327191042|gb|EGE58095.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CNPAF512]
Length = 330
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEATADGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + W+++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAISFYRVLETAAQNLAWIEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q +LHLH + + +P+ S
Sbjct: 268 ----------FDDDPNWDFP-------------GGI---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|405382859|ref|ZP_11036635.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397320620|gb|EJJ25052.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 330
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 LAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTADGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q +LHLH + + +P+ S
Sbjct: 268 ----------YDDDPNWDFP-------------GGI---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRISAPLPPHMVQTWNLLG 319
>gi|398380034|ref|ZP_10538152.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397721350|gb|EJK81898.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 317
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 98 LAVQGGSGLTRHLDKML-EAWTSKKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 156
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G RI D
Sbjct: 157 E--------------RDTKKTYWSLVKGVPRKHEDKISTWLVKEATADGDRMRIAKHGED 202
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA+T Y+V++ + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 203 ---GADHAITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 253
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ +
Sbjct: 254 ----------FDDDHNWDFP-------------GGV---QNRLHLHARHIDIPHPNGG-- 285
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 286 --------------RLRITAPLPPHMVQTWNLLG 305
>gi|440226754|ref|YP_007333845.1| ribosomal large subunit pseudouridine synthase C [Rhizobium tropici
CIAT 899]
gi|440038265|gb|AGB71299.1| ribosomal large subunit pseudouridine synthase C [Rhizobium tropici
CIAT 899]
Length = 332
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 132/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGLTRHIDKML-EAWTSKKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G DR+ + +
Sbjct: 172 E--------------RDTKKTYWSLVKGVPRKHEDKISTWLVKEATADG--DRMRIAKHG 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA++ Y+V++ + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 216 E-EGADHAISYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ S
Sbjct: 269 ----------FDDDPNWDFP-------------GGV---QKRLHLHARHIDIPHPSGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 301 --------------RLRVTAPLPPHMVQTWNLLG 320
>gi|424881736|ref|ZP_18305368.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518099|gb|EIW42831.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 330
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 LAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEPTVDGDRMRIAKHGED 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 217 ---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q +LHLH + + +P+ S
Sbjct: 268 ----------FDDDPNWDFP-------------GGV---QKKLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP+HM ++W++L
Sbjct: 300 --------------RLRVSAPLPAHMVQTWNLLG 319
>gi|420245078|ref|ZP_14748755.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398049440|gb|EJL41860.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 331
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + ++ E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVARHIDQMLDSWVS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G RI D
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKHEDKISTWLVKEQTPDGDRMRIAKHGED 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+V++ + W+++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 ---GADHAVSYYRVLEMAAQTLCWMEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q +LHLH + + +P+ +
Sbjct: 267 ----------FDDDHNWDFP-------------GGI---QKKLHLHARHIDIPHPNGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 299 --------------RLKVTAPLPPHMVQSWNLLG 318
>gi|261325093|ref|ZP_05964290.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261301073|gb|EEY04570.1| pseudouridine synthase [Brucella neotomae 5K33]
Length = 326
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 132/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + E PRLVHR+DRD+SG+LV+ RT+ +A L + FR
Sbjct: 111 LAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALTASFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G D++ V +
Sbjct: 170 E--------------RDTKKTYWALVKGVPRKREDKISTWLVKEQTPDG--DKMRVCQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDS-NHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E G I Q RLHLH + + +PN S I
Sbjct: 267 ----------FEADQNWEF-------------LGGI---QKRLHLHARRIRIPNPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 300 ---------------IDVTAPLPPHMVQSWNLLG 318
>gi|357384683|ref|YP_004899407.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
gi|351593320|gb|AEQ51657.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
Length = 333
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 65/273 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G +R ID + + L EPPRLVHRLDRD+SG L++ +T+ +A+ ++FR
Sbjct: 108 LAVQGGSGTKRHIDGMLKS-LPNKKGEPPRLVHRLDRDTSGCLLVAKTRAAASHFGTVFR 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWA+ +G P +G IS L + +G +++ VV N
Sbjct: 167 SRS--------------ARKIYWAITIGVPHPRQGRISCFLARQSTQDG--EQMVVVENG 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
AQH+V+ Y V + + + + W+ L P+TGR HQLRVH E LGTPI+ D +Y T
Sbjct: 211 -TEGAQHSVSYYSVTESAANQFAWVTLKPVTGRTHQLRVHMME-LGTPILDDPRY--NTL 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
W P +L K LHLH + + +P
Sbjct: 267 ENWNFERPEELGKG----------------------------LHLHARRLAIP------- 291
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L SG + L + APLP HM+ S++ L
Sbjct: 292 ---LRSG------KRLDITAPLPPHMKASFETL 315
>gi|319783351|ref|YP_004142827.1| RluA family pseudouridine synthase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169239|gb|ADV12777.1| pseudouridine synthase, RluA family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 326
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R++D++ + E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVTRNVDDMLEAWRS-PKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P + IS L K +G DR+ V +
Sbjct: 170 --------------ARETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--DRVRVAAHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+VI+ + TWL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 E-KGADHAVSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPILGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N + P G I Q RLHLH + + +P+ + +
Sbjct: 267 ----------FEADTNWDFP-------------GGI---QNRLHLHARRIIIPHPDKGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM++SW+++
Sbjct: 300 ---------------IDVTAPMPPHMRQSWNLIG 318
>gi|300023017|ref|YP_003755628.1| pseudouridine synthase [Hyphomicrobium denitrificans ATCC 51888]
gi|299524838|gb|ADJ23307.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
ATCC 51888]
Length = 327
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 129/274 (47%), Gaps = 65/274 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G ++ ID + E PRLVHRLDRD++G+L++ +T+ +A L F
Sbjct: 111 LAVQGGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRTF- 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+T SA+K YWALV G P+ +G + A L K +G DR+
Sbjct: 170 -QTRSAAKT------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKARPG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ +A HA T Y V+ + H W+ L P+TGR+HQLR H ++G PIVGD KY H
Sbjct: 215 EQDAAMHATTHYSVVDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH 273
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+P E +EK +LHLH + + +P+
Sbjct: 274 ------------------MPAEN-------------IEK--KLHLHARRLVIPHPKGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+T+ + APLP+HM SWD+L
Sbjct: 299 -------------KTIDVTAPLPAHMLASWDLLG 319
>gi|421588806|ref|ZP_16034046.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
sp. Pop5]
gi|403706422|gb|EJZ21688.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
sp. Pop5]
Length = 330
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 132/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 LAVQGGSGVARHIDQML-EAWTSPKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWSLVRGVPRKHEDKISTWLVKEPTADG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 215 E-EGADHAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q RLHLH + + +P+ S
Sbjct: 268 ----------FIDDPNWDFP-------------GGI---QKRLHLHARHIDIPHPSGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|378825699|ref|YP_005188431.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii HH103]
gi|365178751|emb|CCE95606.1| K06179 ribosomal large subunit pseudouridine synthase C
[Sinorhizobium fredii HH103]
Length = 357
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 140 LAVQGGSGVSRHIDKML-EAWTSQKGEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFR 198
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YW+LV G PR + IS L K +G RI +D
Sbjct: 199 E--------------RDTRKIYWSLVKGVPRKREDRISTWLVKEQTPDGDRMRIAKHGDD 244
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 245 ---GADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGDPKY----- 295
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N P G + Q RLHLH + + +P+ +
Sbjct: 296 ----------FEADVNWTFP-------------GGM---QNRLHLHARCIDIPHPNGG-- 327
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LK+ APLP HM +SW++L
Sbjct: 328 --------------RLKITAPLPPHMVQSWNLLG 347
>gi|337269049|ref|YP_004613104.1| RluA family pseudouridine synthase [Mesorhizobium opportunistum
WSM2075]
gi|336029359|gb|AEH89010.1| pseudouridine synthase, RluA family [Mesorhizobium opportunistum
WSM2075]
Length = 326
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 132/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R++D++ E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVTRNVDDMLEAWRNQK-GEKPRLVHRLDRDTSGVLVVARTRLAAMKLSEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P + IS L K +G DR+ + +
Sbjct: 170 --------------ARETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--DRVRIAAHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y++I+ + TWL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 E-KGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N + P G I Q RLHLH + + +P+ +
Sbjct: 267 ----------FEADTNWDFP-------------GGI---QNRLHLHARRIVIPHPDKGF- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM++SW+++
Sbjct: 300 ---------------IDVTAPMPPHMRQSWNLIG 318
>gi|407976912|ref|ZP_11157807.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
indicus C115]
gi|407427639|gb|EKF40328.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
indicus C115]
Length = 328
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHR+DRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVNRHVDGMLEAWRNKK-GEKPRLVHRIDRDTSGVLVVARTRQAAVKLTEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ +G IS L K +G DR+ V +
Sbjct: 170 --------------ARDTKKTYWALVKGVPKKPEGRISTWLVKEQTPDG--DRMRVAKHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S HAV+ Y++I+ + +WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 214 EPDS-DHAVSNYRLIEQAATNLSWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E P GL Q RLHLH + + +P+
Sbjct: 267 ----------FEADQNWEFPG------GL----------QKRLHLHARRIVIPH------ 294
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
D +++ + APLP HM++SW++L
Sbjct: 295 -------PDGGRID---VTAPLPPHMRQSWNLLG 318
>gi|163796887|ref|ZP_02190844.1| Pseudouridine synthase, RluD [alpha proteobacterium BAL199]
gi|159177876|gb|EDP62425.1| Pseudouridine synthase, RluD [alpha proteobacterium BAL199]
Length = 331
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 128/274 (46%), Gaps = 70/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI + +D A L +D E PRLVHRLD+D+SG+L++GR+ +A L FR
Sbjct: 113 LAVQGGSGITKHVDG-ALDGLMFDAKERPRLVHRLDKDTSGVLLVGRSYQAARRLTEAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+ + YWALVVG P+ + G I +GK+ G+ I + N
Sbjct: 172 AKS--------------AMKIYWALVVGEPKPNAGSIEGAIGKLPGRAGEKMAIDLENG- 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A TRY ++ TW+ L P+TGR HQLRVH AE LGTPI+GD KYG
Sbjct: 217 -----KRAFTRYVTVERLGGKVTWVALFPVTGRTHQLRVHMAE-LGTPILGDGKYGGA-- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ F L+ + K LHLH + + +P+
Sbjct: 269 ---EAF------------------------LQGEGVSRK---LHLHARAIRIPD------ 292
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+K ++++APL HM RSW
Sbjct: 293 ----------AKGRPVEVIAPLADHMARSWAFFG 316
>gi|121602476|ref|YP_989029.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760833|ref|ZP_16197646.1| RluA family pseudouridine synthase [Bartonella bacilliformis INS]
gi|120614653|gb|ABM45254.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411174149|gb|EKS44183.1| RluA family pseudouridine synthase [Bartonella bacilliformis INS]
Length = 327
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+LV+ R++++A L + FR
Sbjct: 111 LAVQGGSGLTRHVDGMLEAWRNKK-GEKPRLVHRLDRETSGLLVVARSRSAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ YWALV G PR + IS + K G D++ V +
Sbjct: 170 T--------------REMKKIYWALVRGVPRKKQEKISTWMAKETTAQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + A HAV+ Y+++ +WL++ P TGR HQLRVH + + G PI+GD KY
Sbjct: 214 E-LDANHAVSYYRILDTRARALSWLEMEPYTGRTHQLRVHASHI-GHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P G + Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWELP-------------GGM---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++L
Sbjct: 300 ---------------LDITAPLPPHMVQSFNLL 317
>gi|400755741|ref|YP_006564109.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
gi|398654894|gb|AFO88864.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
Length = 348
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 132/279 (47%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D L+A L +D E PRLVHRLD+D+SG+LV+ RT+ +A L + FR
Sbjct: 110 LAVQGGSGTTKHVDGLSA-ALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
R ++ YWALV G P G I L K +G+ +++ ++
Sbjct: 169 H--------------RATRKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIH 214
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++++ S A+ + T Y + W+ + P+TGR HQLR H AE+ G PI GD KY
Sbjct: 215 SNEVDSTPGAKRSHTHYATLYRVASRAAWVAMEPITGRTHQLRAHMAEI-GHPIAGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G + ++ L G + G I+ K +LHLHC+ M +
Sbjct: 274 GGSS----------------------QENLGDGWGAQLGGIISK--KLHLHCRRMAFEHP 309
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + L + APLP HM+ SWD
Sbjct: 310 TTK---------------KPLSITAPLPDHMKDSWDTFG 333
>gi|399991417|ref|YP_006571657.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398655972|gb|AFO89938.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 343
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 132/279 (47%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D L+A L +D E PRLVHRLD+D+SG+LV+ RT+ +A L + FR
Sbjct: 105 LAVQGGSGTTKHVDGLSA-ALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFR 163
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
R ++ YWALV G P G I L K +G+ +++ ++
Sbjct: 164 H--------------RATRKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIH 209
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++++ S A+ + T Y + W+ + P+TGR HQLR H AE+ G PI GD KY
Sbjct: 210 SNEVDSTPGAKRSHTHYATLYRVASRAAWVAMEPITGRTHQLRAHMAEI-GHPIAGDGKY 268
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G + ++ L G + G I+ K +LHLHC+ M +
Sbjct: 269 GGSS----------------------QENLGDGWGAQLGGIISK--KLHLHCRRMAFEHP 304
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + L + APLP HM+ SWD
Sbjct: 305 TTK---------------KPLSITAPLPDHMKDSWDTFG 328
>gi|408785243|ref|ZP_11196990.1| ribosomal large subunit pseudouridine synthase C [Rhizobium lupini
HPC(L)]
gi|408488837|gb|EKJ97144.1| ribosomal large subunit pseudouridine synthase C [Rhizobium lupini
HPC(L)]
Length = 329
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVTRHIDGLL-EAWTNQKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHQDKISTWLVKEQTIDG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+VI + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 215 E-EGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGI---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|417860108|ref|ZP_12505164.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens F2]
gi|338823172|gb|EGP57140.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens F2]
Length = 329
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVNRHIDGLL-EAWTSPKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHQDKISTWLVKEQTADG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA++ Y+VI + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 215 E-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGI---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|424910331|ref|ZP_18333708.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846362|gb|EJA98884.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 329
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVTRHIDGLL-EAWTNQKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHQDKISTWLVKEQTIDG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+VI + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 215 E-EGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGI---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|338739364|ref|YP_004676326.1| pseudouridylate synthase [Hyphomicrobium sp. MC1]
gi|337759927|emb|CCB65758.1| pseudouridylate synthase [Hyphomicrobium sp. MC1]
Length = 331
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 126/274 (45%), Gaps = 65/274 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G ++ ID + E PRLVHRLDRD++G+L++ +T+ +A L F
Sbjct: 116 LAVQGGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRTF- 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+T SA+K YWALV G P+ +G + A L K +G DR+
Sbjct: 175 -QTRSAAKT------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPG 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA T Y VI + H W+ L P+TGR+HQLR H ++G PIVGD KY H
Sbjct: 220 EQDVAMHATTHYSVIDRAAHKTAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH 278
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+P E +LHLH + + +P+
Sbjct: 279 ------------------MPAENI---------------DKKLHLHARRLVIPHPKGG-- 303
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+T+ + APLP HM+R+W++L
Sbjct: 304 -------------KTIDVTAPLPDHMRRTWELLG 324
>gi|222148667|ref|YP_002549624.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
gi|221735653|gb|ACM36616.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
Length = 330
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 128/274 (46%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 113 LAVQGGSGLNRHIDQML-EAWTSKKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR IS + K ++G RI D
Sbjct: 172 E--------------RDTKKTYWALVKGVPRKHDDKISTWVVKEQTEDGDRMRIARHGED 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+V++ + WL++ P TGR HQLR+H + G PI+GD KY
Sbjct: 218 ---GADHAVSYYRVLETAAQSLAWLEMEPYTGRTHQLRLHALHI-GHPIIGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+
Sbjct: 269 ----------YIDDPNWDFP-------------GGV---QKRLHLHARHIDIPHPDGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 301 --------------RLRITAPLPPHMVQTWNLLG 320
>gi|418296255|ref|ZP_12908099.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens CCNWGS0286]
gi|355539687|gb|EHH08925.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens CCNWGS0286]
Length = 329
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVNRHIDGLL-EAWTSPKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVKGVPRKHQDKISTWLVKEQTMDG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+VI + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 215 E-EGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G I Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGI---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|335037208|ref|ZP_08530519.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
ATCC 31749]
gi|333791364|gb|EGL62750.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
ATCC 31749]
Length = 329
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVNRHIDGLL-EAWTSPKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVRGVPRKHQDKISTWLVKEQTPDG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA++ Y+VI + WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 215 E-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVH-ALYMGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGV---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|418056160|ref|ZP_12694213.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
gi|353209379|gb|EHB74782.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
Length = 312
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 128/274 (46%), Gaps = 65/274 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G ++ ID + E PRLVHRLDRD++G+L++ +T+ +A L IF
Sbjct: 97 LAVQGGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRIF- 155
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+T SA+K YWALV G P+ +G + A L K +G DR+
Sbjct: 156 -QTRSAAKT------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPG 200
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA T Y VI + H W+ L P+TGR+HQLR H ++G PIVGD KY H
Sbjct: 201 EQDVAMHATTHYSVIDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH 259
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+P E +EK +LHLH + + +P+
Sbjct: 260 ------------------MPAEN-------------IEK--KLHLHARRLVIPHPKGG-- 284
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + APLP+HM SW++L
Sbjct: 285 -------------KIIDVTAPLPAHMAASWELLG 305
>gi|110634000|ref|YP_674208.1| ribosomal large subunit pseudouridine synthase C [Chelativorans sp.
BNC1]
gi|110284984|gb|ABG63043.1| ribosomal large subunit pseudouridine synthase C [Chelativorans sp.
BNC1]
Length = 327
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 110 LAVQGGSGVNRHVDGML-EAWRNKRGEKPRLVHRLDRDTSGVLVVARTRLAAVKLTESFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWAL+ G P+ ++G IS L + +G DR+ + +
Sbjct: 169 --------------ARETKKIYWALIKGVPKKAEGRISTWLVRETTPDG--DRMRIAKHG 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y++++ + +WL + P TGR HQLRVH A + G PI+GD KY
Sbjct: 213 E-PGADHAVSTYRLVEQAGTALSWLVMEPFTGRMHQLRVHAAHI-GCPIIGDPKY----- 265
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N E+P G I Q RLHLH + + +P+
Sbjct: 266 ----------FEADQNWELP-------------GGI---QNRLHLHARRIIIPHPDGG-- 297
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
++ + A +P HMQ+SW++L
Sbjct: 298 --------------SIDVTAEMPPHMQQSWNLLG 317
>gi|159184771|ref|NP_354476.2| ribosomal large subunit pseudouridine synthase C [Agrobacterium
fabrum str. C58]
gi|159140059|gb|AAK87261.2| ribosomal large subunit pseudouridine synthase C [Agrobacterium
fabrum str. C58]
Length = 329
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVNRHIDGLL-EAWTSPKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVRGVPRKHQDKISTWLVKEQTPDG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA++ Y+VI + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 215 E-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGV---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|325292801|ref|YP_004278665.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
H13-3]
gi|418406957|ref|ZP_12980276.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens 5A]
gi|325060654|gb|ADY64345.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
H13-3]
gi|358007450|gb|EHJ99773.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens 5A]
Length = 329
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID L T E PRLVHRLDRD+SG+LV+ RT+ +A L + FR
Sbjct: 112 IAVQGGSGVNRHIDGLL-EAWTSPKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS L K +G DR+ + +
Sbjct: 171 E--------------RDTKKTYWALVRGVPRKHQDKISTWLVKEQTPDG--DRMRIAKHG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA++ Y+VI + WL++ P TGR HQLRVH +G PI+GD KY
Sbjct: 215 E-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N + P G + Q RLHLH + + +P+ +
Sbjct: 268 ----------YIDDPNWDFP-------------GGV---QKRLHLHARHIDIPHPNGG-- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L++ APLP HM ++W++L
Sbjct: 300 --------------RLRVSAPLPPHMVQTWNLLG 319
>gi|90417736|ref|ZP_01225648.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
gi|90337408|gb|EAS51059.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
Length = 328
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ + E PRLVHRLDRD+SG+LV+ RT+ +AT L FR
Sbjct: 113 LAVQGGSGLNRHVDKMLEAWRSRK-GEKPRLVHRLDRDTSGVLVVARTRGAATALTKAFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWA++ G P +G IS L K +G DR+ +
Sbjct: 172 E--------------RDTKKTYWAILKGVPVPHEGRISTFLVKEQTPDG--DRMRTAKHG 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA+T Y+VI+ ++W+++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 E-EGADHALTHYRVIENLAQNFSWVEMEPYTGRTHQLRVHALHI-GNPILGDPKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N E P G + Q RLHLH + + +P+ S
Sbjct: 269 ----------FEHDTNWEFP-------------GGV---QKRLHLHARRIVIPHPSGGF- 301
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ +APLP HM +++++
Sbjct: 302 ---------------IDQIAPLPPHMIQTFNLFG 320
>gi|359791922|ref|ZP_09294754.1| RluA family pseudouridine synthase [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359251985|gb|EHK55285.1| RluA family pseudouridine synthase [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 328
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ + E PRLVHRLDRD+SG+LV+ RT+ +A L FR
Sbjct: 111 LAVQGGSGVVRHVDDMLEAWRS-SKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLAEAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS L K +G DR+ V +
Sbjct: 170 --------------GRDAKKTYWALVKGVPKKREDKISTWLIKEPTPDG--DRVRVAQHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y++++ + +WL++ P TGR HQLRVH A + G PI+GD KY
Sbjct: 214 E-KGADHAVSYYRILEQAGQTMSWLEMEPHTGRTHQLRVHAAHI-GCPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N + P G + Q RLHLH + + +P+ + +
Sbjct: 267 ----------FEADTNWDFP-------------GGV---QNRLHLHARRIRIPHPDKGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM++SW+++
Sbjct: 300 ---------------IDVTAPMPPHMRQSWNLIG 318
>gi|365855074|ref|ZP_09395131.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
gi|363719513|gb|EHM02820.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
Length = 326
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 120/274 (43%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG I++ +D + L + + E PRLVHRLDRD+SG++++ R Q +A+ L FR
Sbjct: 109 LPVQGGPNIKKHLDGML-DALRFGHEERPRLVHRLDRDTSGVILLARDQRAASFLAKAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWA+VVG P+ G I PL K G + V
Sbjct: 168 S--------------RDAKKTYWAIVVGQPQYEAGRIDMPLAK----QGGGPQGERVVPA 209
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ AVT Y + TWL+L PLTGR HQLRVHCA L TPI+GD KYG Q
Sbjct: 210 EGKEGAFAVTEYTTRDVARRHATWLELHPLTGRTHQLRVHCASALETPILGDGKYGGQA- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
H +S LHLH + + +P+
Sbjct: 269 -----AHLEGMSHS----------------------------LHLHARHLHIPHPDGG-- 293
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
TL + APLP HM S+ L
Sbjct: 294 --------------TLDVTAPLPPHMLESFATLG 313
>gi|296535679|ref|ZP_06897854.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296264003|gb|EFH10453.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 331
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 122/274 (44%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG I++ +D + LT++ E PRLVHRLDRD+SG++++ R ++A L FR
Sbjct: 114 LPVQGGPNIKKHLDGML-DALTFEKEERPRLVHRLDRDTSGVILLARDASAAGFLAKAFR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ D EK YWA+VVG P+ G I L K G V
Sbjct: 173 GR---------DAEK-----TYWAIVVGQPQYQGGRIDMRLAK----QGGGPMGERVVPA 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ HA+T + + + TWL+L PLTGR HQLRVHCA L PI+GD KYG Q
Sbjct: 215 EGRDGAHAITEFDTVDVARRHATWLELRPLTGRTHQLRVHCAAALSCPILGDGKYGGQA- 273
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ L SN LHLH + + +P+
Sbjct: 274 --------AHLEGMSNA-------------------------LHLHARRIVVPHPEGG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
TL++ APLP HM S+ L
Sbjct: 299 --------------TLEVTAPLPPHMLESFATLG 318
>gi|330805203|ref|XP_003290575.1| hypothetical protein DICPUDRAFT_81306 [Dictyostelium purpureum]
gi|325079283|gb|EGC32890.1| hypothetical protein DICPUDRAFT_81306 [Dictyostelium purpureum]
Length = 583
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 147/303 (48%), Gaps = 80/303 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+++ +D + L ++ SE P+LVHRLD+ +SGIL++GR++ +AT + F
Sbjct: 314 LSVQGGSGLKKHLD-MMLNHLRFEKSENPKLVHRLDKATSGILILGRSRLAATAMAEKFE 372
Query: 61 EKTFSASKE-----DNDNEKRI--------------------------LQRWYWALVVGT 89
K S+ K+ + DNE+ +++ YWAL+ G
Sbjct: 373 LKLVSSKKKEKEKFNKDNERENKKNSSKKKKDTKDEEIDDDEDLENKGIKKTYWALIAGA 432
Query: 90 PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSP 149
P+ +G I APL KV++ G+ I + A+ A+T Y+VI+ S +++ L P
Sbjct: 433 PKPREGRIRAPLKKVMI-GGEEKVIPALKIGD--GAKLAITEYKVIQSSLDNQSFVALWP 489
Query: 150 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGL 209
TGR HQLRVHCA VL PI+GD KYG +K NE I KT L
Sbjct: 490 ETGRTHQLRVHCASVLNAPIIGDTKYG---------------NKLVNESI---KTF---L 528
Query: 210 DLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQ 267
+ S S+ +LHLH + + P ++ I ++APLP ++
Sbjct: 529 NSASSSL-----KLHLHARRIQFIHPFTNKPID-----------------IIAPLPPSLK 566
Query: 268 RSW 270
SW
Sbjct: 567 ESW 569
>gi|357030713|ref|ZP_09092657.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
morbifer G707]
gi|356415407|gb|EHH69050.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
morbifer G707]
Length = 329
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG GI + +D + L + + PRLVHR+DRD+SGIL++ RT A L + FR
Sbjct: 106 LATQGGPGITKHVD-MMLDGLRVEGGDRPRLVHRIDRDTSGILLIARTPGVAAKLAAAFR 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +Q+ YWA+VVG P + G+I PL K+ G + + + D
Sbjct: 165 --------------GRDVQKTYWAVVVGRPSPASGIIDQPLAKI--GAGGASLVIAASRD 208
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A A + Y+ + + ++WLKLSPLTGR HQLRVHC E +GTPI+GD +YG
Sbjct: 209 E-EDAASAKSEYETLDAAGKKFSWLKLSPLTGRTHQLRVHC-ESIGTPILGDPRYG---- 262
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
K HP +D RLHLH +++ +P+ +
Sbjct: 263 --GKAAHPDGF-----------------ID-----------RLHLHARQLDIPHPAGG-- 290
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + AP P HM+ ++ L
Sbjct: 291 --------------RLIVTAPPPPHMRETFRTLG 310
>gi|254486362|ref|ZP_05099567.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
gi|214043231|gb|EEB83869.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
Length = 349
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 132/281 (46%), Gaps = 63/281 (22%)
Query: 1 MPVQGGIGIR-RSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+PVQGG G R +D LA L +D E PRLVHRLD+D+SG+L+M RT++ A L S F
Sbjct: 109 LPVQGGSGQSDRHVDALA-DALMFDLDEKPRLVHRLDKDTSGVLIMARTRSIAADLTSSF 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVV 117
R R ++ YWA V G P G I L K G+ +++ V
Sbjct: 168 RH--------------RQTRKIYWAAVAGVPHPKNGTIKFGLVKAFGHGARGEGEKMYCV 213
Query: 118 ---NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ D A+ A T Y + + W+ L P+TGR HQLR H AE+ G PIVGD K
Sbjct: 214 HPKDMDTTEGAKRATTDYATLAQAGTRTCWVALIPVTGRTHQLRAHMAEI-GHPIVGDGK 272
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E + G + G + K +LHLH + +TL +
Sbjct: 273 YG-----------------GSGQE-----NMGDGWGAQLGGDISK--KLHLHARSLTLEH 308
Query: 235 -VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
V++A TL L+AP+P HM R+WD
Sbjct: 309 PVTKA----------------TLNLIAPMPDHMVRTWDTFQ 333
>gi|254476979|ref|ZP_05090365.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
gi|214031222|gb|EEB72057.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
Length = 348
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 131/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D L+ L +D E PRLVHRLD+D+SG+LV+ RT+ +A L + FR
Sbjct: 110 LAVQGGSGTTKHVDGLS-EALKFDAEEKPRLVHRLDKDTSGVLVLARTRQAAQALTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
++ YWALV G P G I L K +G+ +++ ++
Sbjct: 169 HHA--------------TRKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIH 214
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++++ S A+ + T+Y + W+ + P+TGR HQLR H AE+ G PI GD KY
Sbjct: 215 SNEVDSTPGAKRSHTQYATLYRVASRAAWVAMEPITGRTHQLRAHMAEI-GHPIAGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G I+ K +LHLHC+ M +
Sbjct: 274 G-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHCRRMAFEHP 309
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + L + APLP HM+ SWD
Sbjct: 310 TTK---------------KPLSITAPLPEHMKESWDTFG 333
>gi|395767190|ref|ZP_10447725.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
gi|395414503|gb|EJF80945.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
Length = 327
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 134/273 (49%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++++A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEAWRNKK-GEKPRLVHRLDRETSGVLIVARSRSAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G PR + IS + K V + G D++ V +
Sbjct: 170 E--------------RETKKTYWALVRGVPRKKQDKISTWMVKEVTEQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSNHAVSYYRVLDTRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWELP-------------GGI---QNRLHLHARRIRIPHPSGGL- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L ++APLP HM +S+++L
Sbjct: 300 ---------------LDVIAPLPPHMLQSFNLL 317
>gi|83593991|ref|YP_427743.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|386350743|ref|YP_006048991.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
gi|83576905|gb|ABC23456.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|346719179|gb|AEO49194.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
Length = 330
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 128/274 (46%), Gaps = 71/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G +D + + D E PRLVHRLD+D+SG+LV+ RTQ +A L S FR
Sbjct: 112 LAVQGGTGTPHHLDGMLESL--ADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R + YWA+VVG P +G I L KV G+ +R+ +N +
Sbjct: 170 --------------SREALKVYWAIVVGRPPMLQGTIKGALAKVA--GGRGERME-INEE 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + AVT ++V+ + W++L P TGR HQLRVHC E +GTPI+GD KYG
Sbjct: 213 E---GKRAVTDFRVVDQAAKACAWVELHPRTGRTHQLRVHCLE-MGTPILGDGKYGG--- 265
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
P + + E+PK R+HLH + + LP+ + +
Sbjct: 266 -------PGAFLEGT--ELPK--------------------RMHLHARALALPHPAGGV- 295
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L+++AP P H S L
Sbjct: 296 ---------------LEIIAPPPPHFVESLKTLG 314
>gi|427429389|ref|ZP_18919424.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425880582|gb|EKV29278.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 325
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 104/176 (59%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G R ID + L YDY + PRLVHRLDRD+SG+LV+GRT +A+VL + F+
Sbjct: 109 LATQGGTGTNRHIDGML-EALRYDYPDKPRLVHRLDRDTSGVLVVGRTAKAASVLAAAFK 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWA+VVG P+ S+G +SAPL K GK+ V+ D
Sbjct: 168 --------------SRDARKVYWAVVVGAPKPSEGRLSAPLAKA---PGKAGERMEVDED 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ AVT ++ ++ WL++ PLTGR HQLRVH A +GTPI+GD KYG
Sbjct: 211 W---GKPAVTVFRTVEAVAGKAAWLEMEPLTGRTHQLRVHAA-AMGTPILGDGKYG 262
>gi|329114604|ref|ZP_08243363.1| Ribosomal large subunit pseudouridine synthase C [Acetobacter
pomorum DM001]
gi|326696084|gb|EGE47766.1| Ribosomal large subunit pseudouridine synthase C [Acetobacter
pomorum DM001]
Length = 328
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 125/272 (45%), Gaps = 69/272 (25%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI + ID + D P RLVHR+D+D+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITKHIDMMLDGLREEDDPRP-RLVHRIDKDTSGLLLLARTPGVAAKLAASFR-- 166
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ YWA+VVG P G I PL ++ G ITV + +
Sbjct: 167 ------------GRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKD 211
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
AQ A + Y+V+ + ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 212 ADAQFARSVYEVLDSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA--- 267
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
HPS + RLHLH + + +P+ +
Sbjct: 268 ---AHPSGFTD----------------------------RLHLHARMLDMPHPAGG---- 292
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LP HM+ ++ L
Sbjct: 293 ------------RLTVSAELPPHMRETFRTLG 312
>gi|339018077|ref|ZP_08644220.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter tropicalis NBRC 101654]
gi|338752854|dbj|GAA07524.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter tropicalis NBRC 101654]
Length = 327
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 129/275 (46%), Gaps = 70/275 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEP-PRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ VQGG GI + +D + L + +P PRLVHR+DRD+SG+L++ RT A L F
Sbjct: 108 LAVQGGPGITKHVD-MMLDGLRAEADDPRPRLVHRIDRDTSGLLLLARTPGVAAKLAEAF 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R R +++ YWA+VVG P G I PL ++ ++ I V +
Sbjct: 167 R--------------GRDVKKTYWAVVVGRPDPLAGEIDQPLARL---GAGANAIMVAAD 209
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ AQ+A + Y+V+ + ++WL LSPLTGR HQLRVHC E LGTPI+GD KYG T
Sbjct: 210 RKDEDAQYARSTYEVVDAAARKFSWLALSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAT 268
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
D KD +LHLH +E+ +P+ +
Sbjct: 269 AH-------VDGFKD---------------------------QLHLHARELDMPHPAGG- 293
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LP HM+ ++ L
Sbjct: 294 ---------------RLVVTAELPPHMRETFRALG 313
>gi|312114370|ref|YP_004011966.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219499|gb|ADP70867.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 326
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 130/272 (47%), Gaps = 67/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG R ID L A E PRLVHRLDRD++GIL + + + +A L +F
Sbjct: 114 VQGGTKTTRHIDGLLAGMADRFGGERPRLVHRLDRDTTGILAVAKDRQTAARLGRLF--- 170
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+ R +Q+ YWA+ G P+ ++G + A L K +G DR+ +
Sbjct: 171 -----------QTRSVQKIYWAITRGIPKPTQGKVEAALVKASGPDG--DRVRKARPGEQ 217
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
AQHA T Y VI + + W+ L P+TGR+HQLR H ++LGTPI+GD KYG T
Sbjct: 218 ELAQHATTFYSVIDRAAN-MAWVSLKPVTGRQHQLRAHM-DILGTPILGDQKYGDGT--- 272
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
EIP E +E+ +LHLH + +TL +
Sbjct: 273 ---------------EIPIEN-------------IER--KLHLHARRLTLKD-------- 294
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
KL + + APLPSH+ +++++L
Sbjct: 295 --------PKLGEIDISAPLPSHIAQTFELLG 318
>gi|421849506|ref|ZP_16282485.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
gi|371459693|dbj|GAB27688.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
Length = 328
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 125/272 (45%), Gaps = 69/272 (25%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI + +D + D P RLVHR+D+D+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITKHVDMMLDGLREEDDPRP-RLVHRIDKDTSGLLLLARTPGVAAKLAASFR-- 166
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ YWA+VVG P G I PL ++ G ITV + +
Sbjct: 167 ------------GRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKD 211
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
AQ A + Y+V+ + ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 212 ADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA--- 267
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
HPS + RLHLH + + +P+ +
Sbjct: 268 ---AHPSGFTD----------------------------RLHLHARMLDMPHPAGG---- 292
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LP HM+ ++ L
Sbjct: 293 ------------RLTVSAELPPHMRETFRTLG 312
>gi|421852911|ref|ZP_16285594.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371478910|dbj|GAB30797.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 328
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 125/272 (45%), Gaps = 69/272 (25%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI + +D + D P RLVHR+D+D+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITKHVDMMLDGLREEDDPRP-RLVHRIDKDTSGLLLLARTPGVAAKLAASFR-- 166
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ YWA+VVG P G I PL ++ G ITV + +
Sbjct: 167 ------------GRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKD 211
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
AQ A + Y+V+ + ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 212 ADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA--- 267
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
HPS + RLHLH + + +P+ +
Sbjct: 268 ---AHPSGFTD----------------------------RLHLHARMLDMPHPAGG---- 292
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LP HM+ ++ L
Sbjct: 293 ------------RLTVSAELPPHMRETFRTLG 312
>gi|347761705|ref|YP_004869266.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter xylinus NBRC 3288]
gi|347580675|dbj|BAK84896.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter xylinus NBRC 3288]
Length = 325
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI ID L PRLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITHHIDALLDGLRENPDDPRPRLVHRIDRDTSGLLLVARTPGVAAKLAAAFR-- 167
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R + + YWA+VVG P + G+I PL K+ G I+VV
Sbjct: 168 ------------GRDVHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGD 212
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A HA++ Y+V+ + +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 213 PDAVHALSEYEVLDAAARKMSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|258542797|ref|YP_003188230.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|384042718|ref|YP_005481462.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
gi|384051235|ref|YP_005478298.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|384054343|ref|YP_005487437.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|384057577|ref|YP_005490244.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|384060218|ref|YP_005499346.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|384063510|ref|YP_005484152.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|384119520|ref|YP_005502144.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633875|dbj|BAH99850.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|256636934|dbj|BAI02903.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|256639987|dbj|BAI05949.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|256643043|dbj|BAI08998.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|256646098|dbj|BAI12046.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|256649151|dbj|BAI15092.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|256652138|dbj|BAI18072.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655195|dbj|BAI21122.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
Length = 328
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 125/272 (45%), Gaps = 69/272 (25%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI + +D + D P RLVHR+D+D+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITKHVDMMLDGLREEDDPRP-RLVHRIDKDTSGLLLLARTPGVAAKLAASFR-- 166
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ YWA+VVG P G I PL ++ G ITV + +
Sbjct: 167 ------------GRDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKD 211
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
AQ A + Y+V+ + ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 212 ADAQSARSVYEVLDSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA--- 267
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
HPS + RLHLH + + +P+ +
Sbjct: 268 ---AHPSGFTD----------------------------RLHLHARMLDMPHPAGG---- 292
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LP HM+ ++ L
Sbjct: 293 ------------RLTVSAELPPHMRETFRTLG 312
>gi|85703848|ref|ZP_01034951.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
gi|85671168|gb|EAQ26026.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
Length = 347
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 62/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D LA L + E PRLVHRLD+D+SG+L++ RT+ +A L + FR
Sbjct: 109 LPVQGGSKQTRHVDGLA-EALRFGAEEKPRLVHRLDKDTSGVLLLARTREAAKGLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
+ N ++I YWA V G P G + L K G+ +++ V+
Sbjct: 168 HR----------NTRKI----YWAAVAGVPTPRMGTVRYGLVKAPGHGAKGEGEKMICVH 213
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++ S A+ A T Y VI+ + +W+ L P+TGR HQLR H AE+ G P+VGD KY
Sbjct: 214 PREVESTPGAKPATTDYAVIEAAGARTSWMALIPVTGRTHQLRAHMAEI-GHPVVGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN- 234
G S +E L G + G + + +LHLH + + + +
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGDVSR--KLHLHARSLKIEHP 308
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
VS+AI L + APLP HMQR+WD+
Sbjct: 309 VSRAI----------------LHITAPLPEHMQRTWDLFQ 332
>gi|83950496|ref|ZP_00959229.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
gi|83838395|gb|EAP77691.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
Length = 346
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 128/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D LA L +D E PRLVHRLD+D+SG+L++ RT+ A L + FR
Sbjct: 108 LPVQGGSKQTRHVDGLA-EALRFDLDEKPRLVHRLDKDTSGVLILARTRQMAADLTAAFR 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTP-----RCSKGVISAPLGKVVVDNGKSDRIT 115
+ N ++I YWA V G P G++ AP + K I
Sbjct: 167 HR----------NTRKI----YWAAVAGVPLPRMGTVKYGLVKAPGHGKGGEGEKMLCIH 212
Query: 116 VVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D A+HA + Y V++ + W+ L P+TGR HQLR H AE LG PIVGD KY
Sbjct: 213 PREVDNTPGAKHATSDYAVLENAGQRTAWMALVPVTGRTHQLRAHMAE-LGHPIVGDGKY 271
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G ++ L G + G + + +LHLH + +T+ +
Sbjct: 272 GGSG----------------------QENLGDGWGAQLGGDVSR--KLHLHARSLTIRHP 307
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + L L APLP HM R+WD+
Sbjct: 308 ATGAR---------------LHLTAPLPDHMARTWDLFQ 331
>gi|328543393|ref|YP_004303502.1| pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
gi|326413138|gb|ADZ70201.1| Pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
Length = 334
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 128/274 (46%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + T E PRLVHRLDR++SG+L++ +T+ +A L FR
Sbjct: 114 LAVQGGSGLSRHLDGML-DAFTNKKGEKPRLVHRLDRETSGVLLVAKTRKAAQELTRAFR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+++ ++ YWAL+ G P+ +G IS L + D G + D
Sbjct: 173 QRS--------------TRKIYWALLAGVPKPRQGRISTYLAR---DEGSEKMKVARHGD 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
AQHAV+ Y V++ S W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 216 D--EAQHAVSLYSVVEQSAQKLAWVSLRPVTGRTHQLRAHAAHI-GHPIVGDDKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
N E+P G I Q RLHL + + +P+ S
Sbjct: 268 -----------FNIENWELP-------------GGI---QNRLHLLARRIVIPHPSGH-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
T+ + APLP HMQ+SW++L
Sbjct: 299 -------------GTIDVSAPLPPHMQQSWNLLG 319
>gi|330993253|ref|ZP_08317189.1| Ribosomal large subunit pseudouridine synthase C [Gluconacetobacter
sp. SXCC-1]
gi|329759655|gb|EGG76163.1| Ribosomal large subunit pseudouridine synthase C [Gluconacetobacter
sp. SXCC-1]
Length = 322
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI ID L PRLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 107 VQGGPGITHHIDALLDGLRDSPDDPRPRLVHRIDRDTSGLLLVARTPGVAAKLAAAFR-- 164
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R + + YWA+VVG P + G+I PL ++ G I+VV
Sbjct: 165 ------------GRDVHKVYWAVVVGRPSPATGIIDQPLTRLGAGAGA---ISVVAERGD 209
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A HA++ Y+V+ + +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 210 ADAVHALSEYEVLDAAARKMSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 262
>gi|349699577|ref|ZP_08901206.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter europaeus LMG 18494]
Length = 325
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI ID L PRLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITHHIDALLDGLRDSPDDPRPRLVHRIDRDTSGLLLVARTPGVAAKLAAAFR-- 167
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R + + YWA+VVG P + G+I PL K+ G I+VV
Sbjct: 168 ------------GRDVHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGD 212
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A HA++ Y+V+ + +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 213 ADAVHALSEYEVLDAAGRKLSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|349686578|ref|ZP_08897720.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter oboediens 174Bp2]
Length = 325
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI ID L PRLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITHHIDALLDGLRENPDDPRPRLVHRIDRDTSGLLLVARTPGVAAKLAAAFR-- 167
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R + + YWA+VVG P + G+I PL K+ G I+VV
Sbjct: 168 ------------GRDVHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGD 212
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A HA++ Y+V+ + +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 213 ADAVHALSEYEVLDAAGRKLSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|254512315|ref|ZP_05124382.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
gi|221536026|gb|EEE39014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
Length = 347
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 131/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG G R +D L+ L + Y E PRLVHRLD+D+SG+L+M RT+ +A L + FR
Sbjct: 109 LPVQGGSGQTRHVDSLS-EALRFGYDENPRLVHRLDKDTSGVLLMARTRDAAKALTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
+ N ++I YWALV G P G I L K G+ +++ ++
Sbjct: 168 HR----------NTRKI----YWALVAGVPTPYLGEIKTGLVKASGHGKQGEGEKMIALH 213
Query: 119 NDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++ A+ A T Y + W+ + P+TGR HQLR H A + G PI+GD KY
Sbjct: 214 PSEVNDTPGAKRAHTLYATLYRVAGRAAWVAMEPVTGRTHQLRAHMAAI-GHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G I+ K +LHLH + ++
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLSF--- 305
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I + +S L APLP HM+ SWD L
Sbjct: 306 EHPITRKPVS------------LAAPLPDHMKHSWDTLG 332
>gi|319899068|ref|YP_004159161.1| ribosomal large subunit pseudouridine synthase C [Bartonella
clarridgeiae 73]
gi|319403032|emb|CBI76587.1| ribosomal large subunit pseudouridine synthase C [Bartonella
clarridgeiae 73]
Length = 327
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 132/273 (48%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SGILV+ R++ +A VL + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEAWRNKK-GEKPRLVHRLDRETSGILVVARSRGAAQVLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + + + ++D++ V +
Sbjct: 170 A--------------RETKKTYWALVRGVPRKKQDKISTWMAREITT--QADKMRVCEHR 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q + HA++ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 Q-PDSNHAISYYRVLDTRGKSLSWLEMEPYTGRTHQLRVHAAHI-NHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P+ G+ Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWELPR------GV----------QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++
Sbjct: 300 ---------------LDITAPLPPHMVQSFNIF 317
>gi|410942981|ref|ZP_11374722.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
frateurii NBRC 101659]
Length = 330
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 123/274 (44%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG GI + +D + L + + PRLVHR+DRD+SGIL++ RT A L + FR
Sbjct: 106 LATQGGPGITKHVD-MMLDGLRKEDGDRPRLVHRIDRDTSGILLIARTPGVAAKLAAAFR 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R + + YWA+VVG P + G+I PL K+ +
Sbjct: 165 --------------GRDVGKTYWAIVVGRPAQASGIIDQPLAKIGAGGAALVVAASRGEE 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+SA+ + Y+ I + ++WL LSPLTGR HQLRVHC E LGTPIVGD +YG
Sbjct: 211 DAVSAK---SEYETIDAAGKKFSWLALSPLTGRTHQLRVHC-ESLGTPIVGDPRYG---- 262
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
K HP RLHLH +++ +P+ +
Sbjct: 263 --GKAAHPEGFID----------------------------RLHLHARQLDIPHPAGG-- 290
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + APLP HM+ ++ L
Sbjct: 291 --------------RLIVTAPLPPHMRETFRSLG 310
>gi|414341387|ref|YP_006982908.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans H24]
gi|411026722|gb|AFV99976.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans H24]
gi|453330666|dbj|GAC87412.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
thailandicus NBRC 3255]
Length = 330
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 123/274 (44%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG GI + +D + L + + PRLVHR+DRD+SGIL++ RT A L + FR
Sbjct: 106 LATQGGPGITKHVD-MMLDGLRKEDGDRPRLVHRIDRDTSGILLIARTPGVAAKLAAAFR 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R + + YWA+VVG P + G+I PL K+ +
Sbjct: 165 --------------GRDVGKTYWAIVVGRPAQASGIIDQPLAKIGAGGAALVVAASRGEE 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+SA+ + Y+ I + ++WL LSPLTGR HQLRVHC E LGTPIVGD +YG
Sbjct: 211 DAVSAK---SEYETIDAAGKKFSWLALSPLTGRTHQLRVHC-ESLGTPIVGDPRYG---- 262
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
K HP RLHLH +++ +P+ +
Sbjct: 263 --GKAAHPEGFID----------------------------RLHLHARQLDIPHPAGG-- 290
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + APLP HM+ ++ L
Sbjct: 291 --------------RLIVTAPLPPHMRETFRSLG 310
>gi|346991289|ref|ZP_08859361.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TW15]
Length = 347
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 128/281 (45%), Gaps = 64/281 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG G R +D L+ L + Y E PRLVHRLD+D+SG+L+M RT+ +A L + FR
Sbjct: 109 LPVQGGSGQTRHVDSLS-EALRFGYDENPRLVHRLDKDTSGVLLMARTREAAKGLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
R Q+ YWALV G P G I L K G+ +++ V+
Sbjct: 168 H--------------RNTQKIYWALVAGVPTPYLGEIKTGLVKAPGHGKQGEGEKMIAVH 213
Query: 119 NDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++ A+ A T Y + W+ + P+TGR HQLR H A +G PI+GD KY
Sbjct: 214 PSEVNDTPGAKRAHTLYATLYRVAGRAAWVAMEPVTGRTHQLRAHMA-AIGHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--P 233
G S +E L G + G I+ K +LHLH + ++ P
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLSFEHP 308
Query: 234 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ I + APLP HM+ SWD L
Sbjct: 309 ETRKPIT-----------------ITAPLPDHMKHSWDTLG 332
>gi|58040098|ref|YP_192062.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans 621H]
gi|58002512|gb|AAW61406.1| Ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans 621H]
Length = 335
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 127/274 (46%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG GI + +D + L + + PRLVHR+DRD+SGIL++ RT A L + FR
Sbjct: 106 LATQGGPGITKHVD-MMLDGLRTEGGDRPRLVHRIDRDTSGILLIARTPGVAAKLAAAFR 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ YWA+VVG P G+I PL K+ G + + + D
Sbjct: 165 --------------GRDVEKTYWAVVVGRPSPESGIIDQPLAKI--GAGGAALVIAASRD 208
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A A T Y+ + + +WLKLSPLTGR HQLRVH E +GTPI+GD +YG
Sbjct: 209 E-EDAASAKTEYETLDAAGKKLSWLKLSPLTGRTHQLRVHT-ESIGTPILGDPRYG---- 262
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
K HP +D RLHLH +++ +P+ +
Sbjct: 263 --GKAAHPEGF-----------------ID-----------RLHLHARQLDIPHPAGG-- 290
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + APLP HM+ ++ L
Sbjct: 291 --------------RLIVTAPLPPHMRETFRTLG 310
>gi|260432477|ref|ZP_05786448.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416305|gb|EEX09564.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 132/279 (47%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG G R +D LA L + Y E PRLVHRLD+D+SG+L+M RT+ +A L + FR
Sbjct: 109 LPVQGGSGQARHVDGLA-EALRFGYDENPRLVHRLDKDTSGVLLMARTREAAKGLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
+ N ++I YWALV G P G I L K G+ +++ V+
Sbjct: 168 HR----------NTRKI----YWALVAGVPTPYLGEIKTGLVKAPGHGKQGEGEKMIAVH 213
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++I S A+ A T Y + +W+ + P+TGR HQLR H A + G PI+GD KY
Sbjct: 214 LNEIDSTPGAKRAHTLYATLFRVASRASWVAMEPVTGRTHQLRAHMAAI-GHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G ++ K +LHLH + + +
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGVISK--KLHLHARTASFKHP 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
Q + + APLP HM+ SWD L
Sbjct: 309 MTGKQ---------------VTINAPLPPHMKDSWDTLG 332
>gi|395777982|ref|ZP_10458495.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|423715908|ref|ZP_17690129.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
gi|395418291|gb|EJF84618.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|395429210|gb|EJF95284.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
Length = 327
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHIDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G P+ + IS + K + G D++ V ++
Sbjct: 170 E--------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG--DKMRVCDHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V++ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 EP-DSHHAVSYYRVLESRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L +VAPLP HM +S+++L+
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLLS 318
>gi|296444792|ref|ZP_06886755.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
gi|296257740|gb|EFH04804.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
Length = 365
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 132/288 (45%), Gaps = 70/288 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + D P LVHRLDRD+SG+L++ + + +A L IFR
Sbjct: 119 LAVQGGSGMTRHIDGMLESLAKGDTR--PVLVHRLDRDTSGVLLIAKNRRTAADLGEIFR 176
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVIS------APLGKVVVDNGKSDRI 114
R ++ YWALV G P+ ++G +S A +G S+R
Sbjct: 177 S--------------RQAKKIYWALVEGVPKPAQGRVSLYLAKGAAMGDDRPPRPGSERR 222
Query: 115 TVVNNDQIM--------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 166
+ + M AQH++T Y +++ + WL + PLTGR HQLR H AE +
Sbjct: 223 EAADAREKMRVARHGDEGAQHSLTYYAIVEKAAPRCAWLSMKPLTGRTHQLRAH-AEAIA 281
Query: 167 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 226
PI GD KYG HR + +D +P+ GL+ +LHL
Sbjct: 282 CPIFGDPKYG---HRPEDEVR----RRDPMRAMPE------GLER----------KLHLL 318
Query: 227 CKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + LPN K TL + APLP+HMQ SWDV
Sbjct: 319 ARRLILPN----------------PKGGTLDVTAPLPAHMQTSWDVFG 350
>gi|296114939|ref|ZP_06833585.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295978497|gb|EFG85229.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 325
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 96/174 (55%), Gaps = 18/174 (10%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG GI ID L PRLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 110 VQGGPGITHHIDGLLDGLREQPDDPRPRLVHRIDRDTSGLLLLARTPGVAAKLAASFRS- 168
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ YWA+ VG P + G++ PL ++ G I VV +
Sbjct: 169 -------------RDVRKVYWAVTVGRPTPASGIVDQPLTRLGAGAGA---IMVVAGRRD 212
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A HA++ Y+V+ + +WL LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 213 KDAVHALSEYEVLDAAGRKLSWLALSPLTGRTHQLRVHC-EALGTPILGDPKYG 265
>gi|367471682|ref|ZP_09471287.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 285]
gi|365276001|emb|CCD83755.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 285]
Length = 468
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 128/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +AT L FR
Sbjct: 247 LAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFR 305
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D G+ D I V
Sbjct: 306 HRS--------------ARKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAH 348
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S + W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 349 GDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----- 402
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F+ + S L GL Q RLHL + + +P+ +
Sbjct: 403 -----FNIENWS------------LPGGL----------QNRLHLLARRIVIPHPRGGV- 434
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ APLP HM +SW++L
Sbjct: 435 ---------------IDATAPLPPHMLQSWNLLG 453
>gi|374332189|ref|YP_005082373.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359344978|gb|AEV38352.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 135/274 (49%), Gaps = 70/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G++R +D + T + PRLVHRLDR++SGIL++ +T+ +A L FR
Sbjct: 130 LAVQGGSGLKRHVDGML-DAFTNQKGDKPRLVHRLDRETSGILLVAKTRRAAQELTKAFR 188
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITVVNN 119
+ N ++I YWA+V G P+ +G IS L + D G+ R+ +
Sbjct: 189 HR----------NTRKI----YWAMVAGVPKPRQGRISTYLAR---DEGEERMRVARHGD 231
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
D+ AQHAV+ Y V++ S +W+ L P+TGR HQLR H A + G PI+GD KY
Sbjct: 232 DE---AQHAVSLYNVVEQSGQKLSWVTLKPVTGRTHQLRAHSAHI-GHPIIGDPKY---- 283
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
N E+P G I Q +LHL + + +P+ S
Sbjct: 284 ------------FNIQNWELP-------------GGI---QNKLHLLARRIVIPHPSG-- 313
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
+ DVS APLP HMQ++W++L
Sbjct: 314 -----NGVIDVS--------APLPPHMQQTWNLL 334
>gi|83854943|ref|ZP_00948473.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83941466|ref|ZP_00953928.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
gi|83842786|gb|EAP81953.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83847286|gb|EAP85161.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
Length = 349
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 130/280 (46%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGIR-RSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+PVQGG G R +D LA L ++ E PRLVHRLD+D+SG+L+M RT++ A L + F
Sbjct: 109 LPVQGGSGQSDRHVDALA-DALMFELDEKPRLVHRLDKDTSGVLIMARTRSIAAALTASF 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVV 117
R R ++ YWA V G P G I L K G+ +++ V
Sbjct: 168 RH--------------RETRKIYWAAVAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCV 213
Query: 118 NNDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ + + A+ A T Y + + W+ L P+TGR HQLR H AE+ G PIVGD K
Sbjct: 214 HPKDMETTEGAKRATTDYATLAQAGKRTCWMALIPVTGRTHQLRAHMAEI-GHPIVGDGK 272
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E + G + G + K +LHLH + +TL
Sbjct: 273 YG-----------------GSGQE-----NMGDGWGAQLGGDISK--KLHLHARSLTL-- 306
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ K +L+ L APLP HM R+WD
Sbjct: 307 -EHPVTKARLN------------LTAPLPDHMARTWDTFQ 333
>gi|254470362|ref|ZP_05083766.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
gi|211960673|gb|EEA95869.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
Length = 349
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 134/274 (48%), Gaps = 70/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G++R +D + T + PRLVHRLDR++SGIL++ +T+ +A L FR
Sbjct: 130 LAVQGGSGLKRHVDGML-DAFTNQKGDKPRLVHRLDRETSGILLVAKTRRAAQELTKAFR 188
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITVVNN 119
+ N ++I YWA+V G P+ +G IS L + D G+ R+ +
Sbjct: 189 HR----------NTRKI----YWAMVAGVPKPRQGRISTYLAR---DEGEERMRVARHGD 231
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
D+ AQHAV+ Y V++ S W+ L P+TGR HQLR H A + G PI+GD KY
Sbjct: 232 DE---AQHAVSLYNVVEQSGQKLAWVTLKPVTGRTHQLRAHSAHI-GHPIIGDPKY---- 283
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
N E+P G I Q +LHL + + +P+ S
Sbjct: 284 ------------FNIQNWELP-------------GGI---QNKLHLLARRIVIPHPSG-- 313
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
+ DVS APLP HMQ++W++L
Sbjct: 314 -----NGVIDVS--------APLPPHMQQTWNLL 334
>gi|146341534|ref|YP_001206582.1| ribosomal large subunit pseudouridine synthase RluC-like protein
[Bradyrhizobium sp. ORS 278]
gi|146194340|emb|CAL78364.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 278]
Length = 458
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 128/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +AT L FR
Sbjct: 237 LAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFR 295
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D G+ D I V
Sbjct: 296 HRS--------------ARKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAH 338
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S + W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 339 GDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----- 392
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F+ + S L GL Q RLHL + + +P+ +
Sbjct: 393 -----FNIENWS------------LPGGL----------QNRLHLLARRIVIPHPRGGV- 424
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ APLP HM +SW++L
Sbjct: 425 ---------------IDATAPLPPHMLQSWNLLG 443
>gi|254500715|ref|ZP_05112866.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
gi|222436786|gb|EEE43465.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
Length = 340
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G++R +D + T PRLVHRLDR++SGI+++ RT+ +A L FR
Sbjct: 114 LAVQGGSGLKRHLDGML-DAFTDQKGNKPRLVHRLDRETSGIILVARTRQAAQELTKAFR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ N +++ YW ++ G P+ +G IS L + + + +R+ VV
Sbjct: 173 HR----------NTRKV----YWTILAGVPKPHQGRISTFLAR----DEEEERMQVVRQG 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
AQHAV+ Y V + S +W+ + P+TGR HQLR H A + G PI+GD KY
Sbjct: 215 GADDAQHAVSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAHI-GHPIIGDDKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
N E+P G I Q RLHL + + +P+ S
Sbjct: 269 -----------FNIENWELP-------------GGI---QNRLHLLARRIVIPHPSG--- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
DVS APLP HMQ++W++L
Sbjct: 299 ----HGKIDVS--------APLPPHMQQTWNLLG 320
>gi|340777611|ref|ZP_08697554.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter aceti NBRC 14818]
Length = 324
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 97/176 (55%), Gaps = 19/176 (10%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG GI + +D + D P RLVHR+DRD+SG+L++ RT A L + FR
Sbjct: 108 LATQGGPGITQHVDMMLDGLREGDDPRP-RLVHRIDRDTSGLLLLARTPGVAAKLAAAFR 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ YWA+VVG P G I PL ++ G IT+ +
Sbjct: 167 --------------GRDVKKTYWAVVVGRPDPMSGEIDQPLARLGAGPGS---ITIAADR 209
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
AQ A T Y+V+ + ++WL LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 210 NDEDAQSARTDYEVLDSAARKFSWLGLSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|365882308|ref|ZP_09421558.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
gi|365289393|emb|CCD94089.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
Length = 332
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 127/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +AT L FR
Sbjct: 111 LAVQGGSGMTRHIDQML-EVMRDSKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D G+ D I V
Sbjct: 170 SRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAH 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S + W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 213 GDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F+ + S L GL Q RLHL + + +P+
Sbjct: 267 -----FNIENWS------------LPGGL----------QNRLHLLARRIVIPHPRGGF- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ APLP HM +SW++L
Sbjct: 299 ---------------IDATAPLPPHMLQSWNLLG 317
>gi|365891926|ref|ZP_09430286.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. STM 3809]
gi|365332088|emb|CCE02817.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. STM 3809]
Length = 327
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 128/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +AT L FR
Sbjct: 106 LAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFR 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D G+ D I V
Sbjct: 165 HRS--------------ARKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAH 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 208 GDEGASHAVTYYAVVEASATKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----- 261
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F+ + S L GL Q RLHL + + +P+ +
Sbjct: 262 -----FNIENWS------------LPGGL----------QNRLHLLARRIVIPHPRGGV- 293
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 294 ---------------IDVTAPLPPHMLQSWNLLG 312
>gi|148256356|ref|YP_001240941.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
sp. BTAi1]
gi|146408529|gb|ABQ37035.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
sp. BTAi1]
Length = 458
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 128/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +AT L FR
Sbjct: 237 LAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFR 295
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D G+ D I V
Sbjct: 296 SRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAH 338
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S + W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 339 GDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----- 392
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F+ + + L GL Q RLHL + + +P+ +
Sbjct: 393 -----FNIENWA------------LPGGL----------QNRLHLLARRIVIPHPRGGV- 424
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ APLP HM +SW++L
Sbjct: 425 ---------------IDATAPLPPHMLQSWNLLG 443
>gi|347739549|ref|ZP_08870795.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
gi|346917122|gb|EGX99601.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
Length = 337
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 125/274 (45%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D + LT+D E P+LVHRLD+D+SG LV+ RT +AT L FR
Sbjct: 119 LAVQGGTGQNKHLDAML-DVLTFDGKERPKLVHRLDKDTSGCLVLARTSFAATRLGGYFR 177
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K +++YWA+ VG P+ +G I A L K + G V+ D
Sbjct: 178 GKE--------------ARKYYWAVTVGVPKQYQGKIDAALAK---EAGTRGERMAVDED 220
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ AVT YQVI+ + ++ L PLTGR HQLR H + GTPI+GD KY Q
Sbjct: 221 E---GARAVTLYQVIENAHRQAAFVALWPLTGRTHQLRAHMVAI-GTPILGDGKYAGQ-- 274
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ F P E+P++ LHLH + + +PN
Sbjct: 275 ---EAFLP------GGAELPRQ--------------------LHLHARRIVIPNPRGG-- 303
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + A LP HM ++W+
Sbjct: 304 -------------KPIDVTANLPPHMAKTWEYFG 324
>gi|395789469|ref|ZP_10468989.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
gi|395430012|gb|EJF96064.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
Length = 327
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 132/273 (48%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++++A L + FR
Sbjct: 111 LAVQGGSGLARHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRSAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 E--------------RETKKTYWALVRGVPKKKQDKISTWMVKDITAQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWALP-------------GGI---QNRLHLHARRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L ++APLP HM +S+++L
Sbjct: 300 ---------------LDIIAPLPPHMVQSFNLL 317
>gi|118591144|ref|ZP_01548543.1| ribosomal large subunit pseudouridine synthase C [Stappia aggregata
IAM 12614]
gi|118436220|gb|EAV42862.1| ribosomal large subunit pseudouridine synthase C [Stappia aggregata
IAM 12614]
Length = 355
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 131/273 (47%), Gaps = 68/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G++R +D + T PRLVHRLDR++SGI+++ RT+ +A L FR
Sbjct: 130 LAVQGGSGLKRHLDGML-DAYTDRKGNKPRLVHRLDRETSGIILVARTRQAAQELTKAFR 188
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ N ++I YWA++ G P+ +G IS L + N +R+ VV
Sbjct: 189 HR----------NTRKI----YWAILAGVPKPFQGRISTFLAR----NDGEERMQVVRQG 230
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ AQHAV+ Y V + S +W+ + P+TGR HQLR H A + G PI+GD KY
Sbjct: 231 ED-EAQHAVSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAHI-GHPIIGDDKY----- 283
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
N E+P G I Q RLHL + + +P+ S
Sbjct: 284 -----------FNIENWELP-------------GGI---QNRLHLLARRIVIPHPSGH-- 314
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
T+ + APLP HMQ++W++L
Sbjct: 315 -------------GTIDVSAPLPPHMQQTWNLL 334
>gi|89053115|ref|YP_508566.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
gi|88862664|gb|ABD53541.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
Length = 354
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 126/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG G R +D LA L + + PRLVHRLD+D+SG+L+M RT+ A L FR
Sbjct: 115 LPTQGGTGQSRHVDGLA-EALKFGLEDKPRLVHRLDKDTSGVLLMARTRMGAKALTDAFR 173
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVN 118
++ ++ YWA V G+P G I L K G+++++ V
Sbjct: 174 LRS--------------TRKIYWAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVP 219
Query: 119 NDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D+I A+ A T Y V+ W L P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 220 VDEIAQVDGAKRAETDYAVMSNLGGRVCWCALVPITGRTHQLRAHMAEI-GHPIIGDGKY 278
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G ++ L G + G + + +LHLH + ++ +
Sbjct: 279 GGSG----------------------QENLGDGWGAQLGGEISR--KLHLHARSLSFRHP 314
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
Q + LVAPLP HM ++WD L
Sbjct: 315 MTGAQ---------------VNLVAPLPEHMAKTWDTLG 338
>gi|395787674|ref|ZP_10467266.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
gi|395410296|gb|EJF76851.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
Length = 327
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 132/273 (48%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++++A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRSAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 E--------------RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWALP-------------GGI---QNRLHLHARRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L ++APLP HM +S+++L
Sbjct: 300 ---------------LDIIAPLPPHMVQSFNLL 317
>gi|159042871|ref|YP_001531665.1| ribosomal large subunit pseudouridine synthase C [Dinoroseobacter
shibae DFL 12]
gi|157910631|gb|ABV92064.1| ribosomal large subunit pseudouridine synthase C [Dinoroseobacter
shibae DFL 12]
Length = 348
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 130/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG G R ID +A L ++ EPPRLVHRLD+D+SG+L+M RT+
Sbjct: 110 LPVQGGSGQERHIDGMA-EALQFELDEPPRLVHRLDKDTSGVLLMARTRR---------- 158
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
SA+ R ++ YWA V G P+ G + L K G+ +++ ++
Sbjct: 159 ----SAAALTAAFRARQTRKIYWAAVAGVPQPQLGTVRYALMKAPGHGKRGEGEKMLCID 214
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
Q+ + A+ A T Y V+ W L P+TGR HQLR H AE LG PI+GD KY
Sbjct: 215 PRQMDAHPDAKRATTDYAVLSALGRRVAWCVLVPITGRTHQLRAHMAE-LGHPIIGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G + K +LHLH + ++L
Sbjct: 274 G-----------------GSGQE-----NLGDGWGAQLGGEMSK--KLHLHARHLSL--- 306
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + QLS L APLP HM R+W+ L
Sbjct: 307 THPVTGAQLS------------LTAPLPPHMARTWEALG 333
>gi|163868619|ref|YP_001609828.1| ribosomal large subunit pseudouridine synthase C [Bartonella
tribocorum CIP 105476]
gi|161018275|emb|CAK01833.1| ribosomal large subunit pseudouridine synthase C [Bartonella
tribocorum CIP 105476]
Length = 327
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 133/274 (48%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHIDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G P+ + IS + K + G D++ V ++
Sbjct: 170 E--------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG--DKMRVCDHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 EP-DSHHAVSYYRVLDTRGRTLSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L ++APLP HM +S+++L+
Sbjct: 300 ---------------LDIIAPLPPHMVQSFNLLS 318
>gi|451940782|ref|YP_007461420.1| ribosomal large subunit pseudouridine synthase C [Bartonella
australis Aust/NH1]
gi|451900169|gb|AGF74632.1| ribosomal large subunit pseudouridine synthase C [Bartonella
australis Aust/NH1]
Length = 327
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 130/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + +D + E PRLVHRLDR++SG+LV+ R++ +A L S FR
Sbjct: 111 LAVQGGSGLTQHVDGMLGVWRNKK-GERPRLVHRLDRETSGVLVVARSRGAAQALTSAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR K IS + K G D++ + +
Sbjct: 170 A--------------RETKKIYWALVRGIPRKKKDKISTWMVKETTAQG--DKMRICGHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S+ HA++ Y+V+ +WL++ P TGR HQLRVH A +G PI+GD KY
Sbjct: 214 EPDSS-HAISYYRVLGTRGRALSWLEMEPHTGRTHQLRVHAA-YMGHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P G I Q RLHLH + +P+ S +
Sbjct: 267 ----------FFSDSNWELP-------------GGI---QNRLHLHAHRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++L
Sbjct: 300 ---------------LDITAPLPPHMVQSFNLL 317
>gi|126724897|ref|ZP_01740740.1| Pseudouridine synthase, RluD [Rhodobacterales bacterium HTCC2150]
gi|126706061|gb|EBA05151.1| Pseudouridine synthase, RluD [Rhodobacteraceae bacterium HTCC2150]
Length = 347
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 128/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG G +R ID L+ L +D E PRLVHRLD+D+SG+L++ R Q SA+ L ++FR
Sbjct: 109 IPVQGGSGQKRHIDGLS-EALRFDSDEKPRLVHRLDKDTSGVLLLARNQRSASELTAVFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV- 117
+ E R + YWA V G P G I L K +G +++ +
Sbjct: 168 SR-----------ESRKI---YWAAVGGVPHPKMGTIRFGLVKAPGHGPSGGGEKMICIH 213
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D+ A+ A T Y V+ W+ L P+TGR HQLR H AE LG PI+GD KY
Sbjct: 214 PRDIDKTDGAKRATTDYAVMTTLARRSAWMALVPVTGRTHQLRAHMAE-LGHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G ++ L G + G + K LHLH + +TL +
Sbjct: 273 GGSG----------------------QENLGDGWGAQLGGDISKN--LHLHARSLTLKHP 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L LVA LP HM +W +
Sbjct: 309 VTGAR---------------LHLVAELPRHMAATWKTVG 332
>gi|319405867|emb|CBI79499.1| ribosomal large subunit pseudouridine synthase C [Bartonella sp. AR
15-3]
Length = 327
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHR+DR++SG+LV+ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRIDRETSGVLVVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + + + + G D++ V
Sbjct: 170 T--------------RETKKTYWALVRGVPRKKQDKISTWMVREITEQG--DKVRVCERR 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 Q-ADSNHAVSYYRVLDTRGKALSWLEMEPYTGRTHQLRVHAA-YMKHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F P DSN +P G + Q RLHLH + + +P+ S I
Sbjct: 267 -----FFP-----DSNWALP-------------GGM---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++
Sbjct: 300 ---------------LDITAPLPPHMLQSFNLF 317
>gi|389694600|ref|ZP_10182694.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
gi|388587986|gb|EIM28279.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
Length = 435
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 129/276 (46%), Gaps = 70/276 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G +R +D L + L D + PRLVHRLD+D++G LV+ +T+ +A+ + FR
Sbjct: 213 LAVQGGSGTKRHVDGLLES-LKDDEGQKPRLVHRLDKDTAGCLVIAKTRFAASTMAKSFR 271
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+T ++ YWALV G PR +G +S L K D G S + D
Sbjct: 272 ART--------------TRKIYWALVAGVPRVKQGRVSTYLAKEG-DEGDSRMRVARHGD 316
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA+T Y V+ S WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 317 E--GASHALTYYAVVDTSAQKLAWLSLKPVTGRTHQLRAHTAHI-GHPIVGDPKY----- 368
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQA 238
D+ N E+P G I Q +LHL + + + P +
Sbjct: 369 --------FDI---ENWELP-------------GGI---QNKLHLLARRIVIAHPRTGKP 401
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I + APLP HMQ+S+++L
Sbjct: 402 ID-----------------VTAPLPPHMQQSFNLLG 420
>gi|395779785|ref|ZP_10460254.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395420160|gb|EJF86445.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 327
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 128/273 (46%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLLVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + K + G R+
Sbjct: 170 A--------------RETKKTYWALVRGVPRKKQDKISTWMVKEITAQGDKMRVC---EH 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 213 GVPDSNHAVSYYRVLDTRGRVLSWLEMEPHTGRTHQLRVHAAHI-DHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFADSNWELP-------------GGI---QNRLHLHARRIRIPHPSGGL- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|149913096|ref|ZP_01901630.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
gi|149813502|gb|EDM73328.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
Length = 348
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 133/280 (47%), Gaps = 62/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D LA L + E PRLVHRLD+D+SG+L++ R++ A L + FR
Sbjct: 110 LPVQGGSKQTRHVDGLA-DALRFGAEEKPRLVHRLDKDTSGVLILARSRAVAKTLTAGFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
R ++ YWA V G P G I L K G+ +++ ++
Sbjct: 169 H--------------RDTRKIYWAAVAGVPSPRMGTIRFGLVKAPGHGAQGEGEKMLCLH 214
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ + S A+ A T + VI+ + W+ L P+TGR HQLR H AE+ G PIVGD KY
Sbjct: 215 PEAVDSTPGAKRATTDFAVIESAGARCAWVALVPVTGRTHQLRAHMAEI-GHPIVGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN- 234
G S +E + G + G + + +LHLH + +TL +
Sbjct: 274 G-----------------GSGQE-----NMGDGWGAQLGGEISR--KLHLHARSLTLEHP 309
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
VS+A L L APLP HM+R+WD+
Sbjct: 310 VSRA----------------RLHLTAPLPDHMKRTWDMFQ 333
>gi|423712841|ref|ZP_17687139.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395410537|gb|EJF77091.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 327
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 128/273 (46%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLLVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + K + G R+
Sbjct: 170 --------------ARETKKTYWALVRGVPRKKQDKISTWMVKEITAQGDKMRVC---EH 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 213 GVPGSNHAVSYYRVLDTRGRVLSWLEMEPHTGRTHQLRVHAAH-MDHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFADSNWELP-------------GGI---QNRLHLHARRIRIPHPSGGL- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|307946319|ref|ZP_07661654.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
gi|307769983|gb|EFO29209.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
Length = 333
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 68/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G++R +D + T E P+LVHRLDR++SGI+++ +T+ +A L FR
Sbjct: 114 LAVQGGSGLKRHLDGML-EAYTNKKGEKPKLVHRLDRETSGIILVAKTRKAAQELTKAFR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ N ++I YWA++ G P+ +G IS L + + + R+ +D
Sbjct: 173 HR----------NTRKI----YWAMLAGVPKPHQGRISTYLARS--EEMERMRVARHGDD 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ AQHAV+ Y V + S +W+ L P+TGR HQLR H A + G PI+GD KY
Sbjct: 217 E---AQHAVSLYSVFEKSAQKLSWVTLKPVTGRTHQLRAHAAHI-GHPIIGDDKY----- 267
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
N E+P G I Q RLHL + + +P+ S
Sbjct: 268 -----------FNIENWELP-------------GGI---QNRLHLLARRIVIPHPSG--- 297
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
+ DVS APLP HMQ++W++L
Sbjct: 298 ----NGMIDVS--------APLPPHMQQTWNLL 318
>gi|423713068|ref|ZP_17687328.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395424694|gb|EJF90874.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 327
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDAMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ ++ IS + K G+ R+
Sbjct: 170 --------------TRETKKTYWALVRGVPKKNQDKISTWIVKETTAQGEKMRVCEHGEP 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+V++ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 216 ---DASHAVSYYRVLETRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWKLP-------------GGI---QNRLHLHARRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|395793298|ref|ZP_10472703.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395431612|gb|EJF97630.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 327
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDAMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ ++ IS + K G+ R+
Sbjct: 170 --------------TRETKKTYWALVRGVPKKNQDKISTWMVKETTAQGEKMRVCEHGEP 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAV+ Y+V++ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 216 ---DASHAVSYYRVLETRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWKLP-------------GGI---QNRLHLHARRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|395786460|ref|ZP_10466187.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|423716647|ref|ZP_17690837.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
gi|395422758|gb|EJF88954.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|395428721|gb|EJF94796.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
Length = 327
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDRD+SG+LV+ R++ +A L + FR
Sbjct: 111 LAVQGGSGVVRHVDGMLEAWRNKK-GEKPRLVHRLDRDTSGVLVVARSRGAAQSLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS L K +G D++ V +
Sbjct: 170 A--------------RDTKKTYWALVRGVPKKKQDKISTWLVKEATADG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+VI +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSDHAVSHYRVIDTRSRVLSWLEMEPYTGRTHQLRVHAA-FINHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN E+P G I Q RLHLH + + + N S +
Sbjct: 267 ----------FFSDSNWELP-------------GGI---QNRLHLHARRIRISNPSGGL- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++L
Sbjct: 300 ---------------LDVTAPLPPHMVQSFNLL 317
>gi|149203330|ref|ZP_01880300.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149143163|gb|EDM31202.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 347
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 131/280 (46%), Gaps = 62/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D LA L + + PRLVHRLD+D+SG+L++ RT+ +A L + FR
Sbjct: 109 LPVQGGSKQLRHVDGLA-EALRFGAEDKPRLVHRLDKDTSGVLLLARTREAAKGLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV--- 117
+ N ++I YWA V G P G I L K K + ++
Sbjct: 168 HR----------NTRKI----YWAAVAGVPTPRMGTIRFGLVKAPGHGAKGEGEKMLCLH 213
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D A+ A T Y VI+ + W+ L P+TGR HQLR H AE+ G PIVGD KY
Sbjct: 214 PRDIDATPGAKPATTDYAVIEAAGARTAWMALIPVTGRTHQLRAHMAEI-GHPIVGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN- 234
G S +E L G + G + + +LHLH + + + +
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGDVSR--KLHLHARSLKIEHP 308
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
VS+AI L + APLP HM R+WD+
Sbjct: 309 VSRAI----------------LHITAPLPEHMARTWDLFQ 332
>gi|254436973|ref|ZP_05050467.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198252419|gb|EDY76733.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 347
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 127/280 (45%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG R +D +A L + Y E PRLVHRLD+D+SG+L++ RT+ +A L FR
Sbjct: 108 LPTQGGSKQLRHVDGMA-EALRFGYDEKPRLVHRLDKDTSGVLILARTRMAAKSLTDAFR 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD--RITVV- 117
+ N ++I YWALV G P G + L K GK D R+ V
Sbjct: 167 HR----------NTEKI----YWALVAGVPIPKLGSVKYGLVKQGGHGGKGDNERMKCVH 212
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D+ A+ A+T Y V+ W+ L+P+TGR HQLR H AE+ G PIVGD KY
Sbjct: 213 PKDVDKTFGAKRALTNYTVLTSLADRTAWVALTPVTGRTHQLRAHMAEI-GHPIVGDGKY 271
Query: 176 GWQTHRKWKQFHPSD-LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
G Q Q +P D EEI + +LHLH + + + +
Sbjct: 272 GAQA----VQDNPGDGWGAGMGEEIGR--------------------KLHLHARSLRIEH 307
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L + A LP HM ++W
Sbjct: 308 PETG---------------KELWIKASLPPHMGKTWSFFG 332
>gi|254449547|ref|ZP_05062984.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
gi|198263953|gb|EDY88223.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
Length = 347
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 127/280 (45%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG R +D +A L + Y E PRLVHRLD+D+SG+LV+ RT+ +A L FR
Sbjct: 108 LPTQGGSKQLRHVDGMA-EALRFGYDERPRLVHRLDKDTSGVLVLARTRMAAKSLTEAFR 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD--RITVV- 117
+ N ++I YWALV G P G I L K GK D R+ V
Sbjct: 167 HR----------NTEKI----YWALVAGVPIPKLGSIKYGLVKQGGHGGKGDNERMKCVH 212
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D+ A+ A+T Y V+ W+ L+P+TGR HQLR H AE+ G PIVGD KY
Sbjct: 213 PKDVDKTFGAKRALTNYTVLTSLADRTAWVALTPVTGRTHQLRAHIAEI-GHPIVGDGKY 271
Query: 176 GWQTHRKWKQFHPSD-LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
G Q +P D EEI + +LHLH + + + +
Sbjct: 272 GAAA----VQDNPGDGWGAGMGEEIGR--------------------KLHLHARSLRIEH 307
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L + A LP HM+++W
Sbjct: 308 PETG---------------KELWIKASLPQHMEKTWGFFG 332
>gi|403530661|ref|YP_006665190.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana RM-11]
gi|403232732|gb|AFR26475.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana RM-11]
Length = 327
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHFDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQTLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 A--------------RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDNPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P+ G+ Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWKLPR------GI----------QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|240850791|ref|YP_002972191.1| ribosomal large subunit pseudouridine synthase C [Bartonella
grahamii as4aup]
gi|240267914|gb|ACS51502.1| ribosomal large subunit pseudouridine synthase C [Bartonella
grahamii as4aup]
Length = 327
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 131/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHMDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQSLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 A--------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 EP-DAHHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDTKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L +VAPLP HM +S+++L+
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLLS 318
>gi|372278301|ref|ZP_09514337.1| ribosomal large subunit pseudouridine synthase C [Oceanicola sp.
S124]
Length = 350
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 126/276 (45%), Gaps = 60/276 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D L+ L + Y E PRLVHRLD+D+SG+L++ RT+ +A L + FR
Sbjct: 109 LPVQGGSKQTRHVDGLS-EALKFGYDEKPRLVHRLDKDTSGLLLLARTREAAAKLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
R ++ YWALV G P G I L K G+ +++ V+
Sbjct: 168 S--------------RETRKIYWALVAGVPHPYMGTIKFGLVKAPGHGSGGEGEKMICVH 213
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
I S A+ AV+ Y V+ W+ L P+TGR HQLR H AE+ G P++GD KY
Sbjct: 214 PRDIESTPGAKRAVSDYSVLWRLGQRAAWVGLVPVTGRTHQLRAHMAEI-GHPMIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G + ++ L G + G + ++ LH T P
Sbjct: 273 GGSS----------------------QENLGDGWGAQLGGEISRKLHLHARLLRFTHPFT 310
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWD 271
+ ++ L APLP HM+RSWD
Sbjct: 311 GKPVE-----------------LEAPLPEHMKRSWD 329
>gi|319407393|emb|CBI81044.1| ribosomal large subunit pseudouridine synthase C [Bartonella sp.
1-1C]
Length = 327
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + E PRLVHR+DR++SGILV+ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHIDNMLEVWRNKK-GEKPRLVHRIDRETSGILVVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + + + G D++ V
Sbjct: 170 T--------------RETKKTYWALVRGVPRKKQDKISTWMVREITAQG--DKMRVCERR 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 Q-PDSNHAVSYYRVLDTRGKALSWLEMEPYTGRTHQLRVHAAYI-NHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P+ G+ Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWDLPR------GM----------QNRLHLHARRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++
Sbjct: 300 ---------------LDVTAPLPPHMVQSFNLF 317
>gi|395765156|ref|ZP_10445772.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
gi|395413009|gb|EJF79488.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
Length = 327
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++++A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEAWRNKK-GEKPRLVHRLDRETSGVLIVARSRSAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 E--------------RETKKTYWALVRGVPKKKQDKISTWMVKDITAQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN + G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDSNWAL-------------LGGI---QNRLHLHARRIRIPHPSGGV- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|46201801|ref|ZP_00054336.2| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 324
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 134/276 (48%), Gaps = 73/276 (26%)
Query: 1 MPVQGGIGIR-RSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+ VQGG G+ + +D L A C + P+LVHRLD+D+SG+L++GRT +A+ L +
Sbjct: 104 LAVQGGTGMADKHLDAWLDALCFG---AGRPKLVHRLDKDTSGVLLLGRTANAASKLAAA 160
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
F+ ++ ++ YWALV G PR +G I APL K+ GK+ V+
Sbjct: 161 FKSRS--------------ARKCYWALVAGVPRYPQGRIDAPLAKL---PGKAGEKMAVD 203
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
++ +HAVT Y+V+ + WL++ P TGR HQLR HC +LGTPI+GD KYG Q
Sbjct: 204 KEE---GKHAVTYYRVVDSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKYGGQ 259
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
L G+ + + +LHLH + + LP+
Sbjct: 260 DA------------------------------LIEGTGVSR--KLHLHARAVRLPHPRTG 287
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L++ APLP H++ S+D
Sbjct: 288 ---------------KMLEVAAPLPPHIKASFDFFG 308
>gi|170744410|ref|YP_001773065.1| RluA family pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168198684|gb|ACA20631.1| pseudouridine synthase, RluA family [Methylobacterium sp. 4-46]
Length = 469
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 127/274 (46%), Gaps = 65/274 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G +R +D L D + PRLVHRLD+D++G LV+ +T+ +A L FR
Sbjct: 246 LAVQGGSGTKRHVDGLLEALRAPD-GQKPRLVHRLDKDTAGCLVIAKTRLAAATLAKTFR 304
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWAL G P+ +G +S L K V G++D V
Sbjct: 305 S--------------RAARKIYWALAAGVPKVRQGRVSTYLAKEEV--GEADARMRVAQH 348
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA+T Y V+ + +WL L P+TGR HQLR H A + G P+VGD KY
Sbjct: 349 GDEGASHALTYYAVVDQAGQKLSWLSLKPVTGRTHQLRAHAAHI-GHPLVGDPKY----- 402
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+ N E+P GL Q RLHL + + +P+
Sbjct: 403 --------FDI---ENWELPG------GL----------QNRLHLLARRIVIPH------ 429
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + DV+ APLP HM +SW++L
Sbjct: 430 -PRTNKPVDVT--------APLPPHMAQSWNLLG 454
>gi|384218112|ref|YP_005609278.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 6]
gi|354957011|dbj|BAL09690.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 6]
Length = 404
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 127/278 (45%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +A+ L FR
Sbjct: 183 LAVQGGSGMTRHIDQML-EVMRDSRGQKPRLVHRIDRETSGCLLIAKTRFAASHLTGAFR 241
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 242 SRS--------------ARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQH 284
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ + + TW+ L P+TGR HQLR H E +G PIVGD KY
Sbjct: 285 GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDAKYFNIEN 343
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 344 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 367
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HMQ+SW++L
Sbjct: 368 GGV----------------IDATAPLPPHMQQSWNLLG 389
>gi|298291467|ref|YP_003693406.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296927978|gb|ADH88787.1| pseudouridine synthase, RluA family [Starkeya novella DSM 506]
Length = 363
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 131/274 (47%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D + L D + PRLVHR+D+D+SGIL++ +++ +A+ L FR
Sbjct: 143 LAVQGGSGTYRHVDGML-EALRGDDGQKPRLVHRIDKDTSGILLVAKSRLAASTLAKTFR 201
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G PR ++G IS L K + ++R+ V +
Sbjct: 202 SRS--------------ARKVYWALVPGVPRPAQGRISTYLAK----DEAAERMRVARHG 243
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HA++ Y V+ + +WL + P+TGR HQLR H A + G PIVGD KY
Sbjct: 244 DD-EASHAISYYAVVDHAAQKLSWLSMKPVTGRTHQLRAHAAHI-GHPIVGDPKYF---- 297
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ E P L GL Q RLHL + + +P+
Sbjct: 298 --------------NVENWP----LPGGL----------QNRLHLLARRLVIPH------ 323
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HMQ+SW+VL
Sbjct: 324 -PRADKLIDVS--------APLPPHMQQSWNVLG 348
>gi|220926865|ref|YP_002502167.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951472|gb|ACL61864.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 457
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 127/272 (46%), Gaps = 65/272 (23%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G +R +D L T D + PRLVHRLD+D++G LV+ +++ +A L FR
Sbjct: 236 VQGGSGTKRHVDGLLEALRTPD-GQKPRLVHRLDKDTAGCLVVAKSRLAAATLAKTFRS- 293
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWAL G PR +G IS L K + + + + D+
Sbjct: 294 -------------RAARKIYWALAAGVPRVRQGRISTYLAKEEMGDADARMRVAQHGDE- 339
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA+T Y V+ + +WL L P+TGR HQLR H A + G P+VGD KY
Sbjct: 340 -GASHALTYYAVVDQAGQKLSWLSLKPVTGRTHQLRAHAAHI-GHPLVGDPKY------- 390
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D+ N E+P GL Q RLHL + + +P+
Sbjct: 391 ------FDI---ENWELPG------GL----------QNRLHLLARRIVIPH-------P 418
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + DV+ APLP HM +SW++L
Sbjct: 419 RTNKPVDVT--------APLPPHMAQSWNLLG 442
>gi|66808785|ref|XP_638115.1| hypothetical protein DDB_G0285543 [Dictyostelium discoideum AX4]
gi|60466557|gb|EAL64609.1| hypothetical protein DDB_G0285543 [Dictyostelium discoideum AX4]
Length = 718
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 144/312 (46%), Gaps = 89/312 (28%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVL----- 55
+ VQGG G+ + +D + + L ++ E P+LVHRLDR++SGIL++GR++ +A+ +
Sbjct: 446 LSVQGGTGLNKHLD-MMLSHLRFEKDENPKLVHRLDRNTSGILILGRSKLAASAMTKKFE 504
Query: 56 ----------------------------HSIFREKTFSASKEDNDNEK----RILQRWYW 83
+FREK + ++ D E + +++ YW
Sbjct: 505 LKLVKENKKDKDDNNNNKNNKNNNKNDSKRLFREKEVFNNNKNKDEENENYSKGIKKTYW 564
Query: 84 ALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYT 143
AL+ TP +G I APL KVVV + T+ D A+ A+T Y+V++ S +
Sbjct: 565 ALLGSTPTPKEGRIRAPLKKVVVGGFEKVVPTLTTGD---GAKIAITEYKVLESSLTKHC 621
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEK 203
++ L P TGR HQLRVHCA VL TPI+GD KYG D DSN +
Sbjct: 622 FISLWPETGRTHQLRVHCASVLNTPIIGDPKYG-------------DKESDSNLK----- 663
Query: 204 TLHFGLDLESGSILEKQPRLHLHCK--EMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 261
+L +LHLH + E P ++ I D+S AP
Sbjct: 664 -----------DLLPYPSKLHLHARRIEFIHPFTNKKI---------DIS--------AP 695
Query: 262 LPSHMQRSWDVL 273
LP + ++W +
Sbjct: 696 LPRELVQNWKTM 707
>gi|395784154|ref|ZP_10463993.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395423909|gb|EJF90097.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 326
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ ID + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 110 LAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQALTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + K G D++ V +
Sbjct: 169 A--------------RETKKTYWALVRGVPRKKQDKISTWMVKETTTQG--DKMRVCEHG 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 213 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMNHPIIGDSKY----- 265
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N E+P G I Q RLHLH + + +P+ S I
Sbjct: 266 ----------FFSDNNWELP-------------GGI---QNRLHLHARRIRIPHPSGGI- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L ++APLP HM +S+++L
Sbjct: 299 ---------------LDIIAPLPPHMVQSFNLL 316
>gi|114327246|ref|YP_744403.1| ribosomal large subunit pseudouridine synthase C [Granulibacter
bethesdensis CGDNIH1]
gi|114315420|gb|ABI61480.1| ribosomal large subunit pseudouridine synthase C [Granulibacter
bethesdensis CGDNIH1]
Length = 366
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 61/270 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG GI R +D L L + + PRLVHRLDRD+SG++V+ R+ A L ++FR
Sbjct: 141 LPSQGGPGITRHLDGLL-DGLRFGRDDRPRLVHRLDRDTSGVIVIARSPGVAAKLAALFR 199
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK--------VVVDNGKSD 112
R ++ YWA+V G P +G I PL + V+ D D
Sbjct: 200 --------------TRETEKVYWAVVAGRPVPVEGRIDRPLLRQNDRNEPVVLADRKDRD 245
Query: 113 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 172
++T A+T Y+ + + WL+L PLTGR HQLRVHCA + PI+GD
Sbjct: 246 KVT------------AITDYRTLDHAARKLAWLELRPLTGRMHQLRVHCA-AMDAPILGD 292
Query: 173 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 232
+YG W ++++E + L GL RLHLH + ++L
Sbjct: 293 ERYG-----SW---------RNTDERGVRNTALVEGLSR----------RLHLHARRLSL 328
Query: 233 PNVSQAIQKVQLSSGCDVSK-LETLKLVAP 261
P+ + + V+ +++ ETL AP
Sbjct: 329 PHPAGGMLSVEADLSPHMAETFETLGFTAP 358
>gi|451942151|ref|YP_007462788.1| ribosomal large subunit pseudouridine synthase C [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451901538|gb|AGF76000.1| ribosomal large subunit pseudouridine synthase C [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 327
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDVMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ ++ IS + V + + D++ V +
Sbjct: 170 T--------------RETKKTYWALVRGVPKKNQDKISTWM--VKENTAQGDKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ S+ HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 EPDSS-HAVSYYRVLDTRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDPKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P G I Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWKLP-------------GGI---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|126736635|ref|ZP_01752375.1| Pseudouridine synthase, RluD [Roseobacter sp. CCS2]
gi|126713948|gb|EBA10819.1| Pseudouridine synthase, RluD [Roseobacter sp. CCS2]
Length = 351
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 127/280 (45%), Gaps = 62/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG R +D L+ L +DY E PRLVHRLD+D+SG+L++ RT+ A
Sbjct: 112 LATQGGTNTTRHVDGLS-EALMFDYDEKPRLVHRLDKDTSGVLLLARTRMMA-------- 162
Query: 61 EKTFSASKEDNDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
K+ +N K R ++ YWA V G P G I L K G+++++ V
Sbjct: 163 -------KQLTENLKHRETRKIYWAAVAGVPHPRAGTIKYGLVKAPGHGRGGENEKMRCV 215
Query: 118 NN---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ D + A+ A + Y V+ W L P+TGR HQLR H AE+ G PIVGD K
Sbjct: 216 HPRDLDSVEGAKRATSDYAVMDTLASRAAWCALVPITGRTHQLRAHMAEI-GHPIVGDGK 274
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E + G +G E +LHLH + +T+ +
Sbjct: 275 YG-----------------GSGQE-------NLGDGWGAGMGSEIGRKLHLHARSLTIEH 310
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ TL L APLP HMQ +WD +
Sbjct: 311 PATG---------------ATLHLTAPLPEHMQNTWDFVG 335
>gi|85715100|ref|ZP_01046084.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
gi|85698015|gb|EAQ35888.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
Length = 380
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + T + + PRLVHRLDR+++G L++ RT+ +AT L FR
Sbjct: 159 LAVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRETAGCLLIARTRFAATALTGAFR 217
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + + I V
Sbjct: 218 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EENEEESIMRVAAH 260
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A V G I+GD KY
Sbjct: 261 GDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRAHMAHV-GHAIIGDPKY----- 314
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N ++P GL Q RLHL + + +P+ +
Sbjct: 315 ----------FNKE-NWQLPG------GL----------QNRLHLLARRIVIPHPRGGV- 346
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
DVS APLP HM +SW++L
Sbjct: 347 -------IDVS--------APLPPHMLQSWNLLG 365
>gi|374576195|ref|ZP_09649291.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
gi|374424516|gb|EHR04049.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
Length = 404
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 127/278 (45%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +A+ L FR
Sbjct: 183 LAVQGGSGMTRHIDQML-EVMRDSKGQKPRLVHRIDRETSGCLLVAKTRFAASHLTGAFR 241
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 242 SRS--------------ARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQH 284
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ + + TW+ L P+TGR HQLR H E +G PIVGD KY
Sbjct: 285 GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIEN 343
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 344 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 367
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HMQ+SW++L
Sbjct: 368 GGV----------------IDATAPLPQHMQQSWNLLG 389
>gi|452825056|gb|EME32055.1| ribosomal large subunit pseudouridine synthase C [Galdieria
sulphuraria]
Length = 358
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G+R S L+ D EPP+LVHRLD++ SG L++ R +A L +F
Sbjct: 149 LACQGGSGLRDSHLGTLLPALSLDNEEPPKLVHRLDKEVSGTLLLARNSVAAKNLALLF- 207
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++R +++ YWALV+G P ++G I + +GK+
Sbjct: 208 -------------QQRQVKKLYWALVIGNPLPTQGEIRKAV------DGKT--------- 239
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A+TRY+V++ WL+L P+TGRK QLR+HCA+VL PI GD K+
Sbjct: 240 -------AITRYRVVEKLHSVAAWLELEPITGRKRQLRLHCAQVLNCPIFGDEKF----- 287
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
P D +++ + + H +L + +HLH ++ PN+ + +
Sbjct: 288 -------PFDRLEENTHLVAYQGLSH---------LLRRPKGIHLHAYSISFPNI-ETLD 330
Query: 241 KVQLSSGCDVSKLETLKLV-APLPSHMQRSWDVL 273
K Q +T K V APLP HM+ +W+ L
Sbjct: 331 KPQ----------KTWKTVTAPLPLHMENTWNTL 354
>gi|395790919|ref|ZP_10470378.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
gi|395409215|gb|EJF75814.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
Length = 327
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 132/273 (48%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS + K +V G D++ V +
Sbjct: 170 A--------------RETKKIYWALVRGVPKKKQDKISTWMVKEMVPQG--DKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HA++ Y+V+ +WL++ P TGR HQLRVH A V PI+GD KY
Sbjct: 214 E-PDSYHAISYYRVLDTRGRTLSWLEMEPYTGRTHQLRVHAAHV-DHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N ++P G I Q RLHLH + + +P+ S +
Sbjct: 267 ----------FFSDNNWKLP-------------GGI---QNRLHLHARRIRIPHPSGGL- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMIQSFNLL 317
>gi|56695430|ref|YP_165778.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
gi|56677167|gb|AAV93833.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
Length = 347
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 128/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D L+ L + E PRLVHRLD+D+SG+LV+ RT+ +A L + FR
Sbjct: 109 LAVQGGSGQTRHVDGLS-EALRFGNDENPRLVHRLDKDTSGVLVLARTREAAARLTAAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
+ N ++I YWALV G P G I L K G+ +++ VV+
Sbjct: 168 HR----------NTRKI----YWALVAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVH 213
Query: 119 ---NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D A+ A T Y + +W+ + P+TGR HQLR H A + G PI+GD KY
Sbjct: 214 LSELDATPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGI-GHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G I+ K +LHLH + ++ +
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLSFEHP 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
S + + APLP HM+ SWD
Sbjct: 309 STR---------------KKVTFTAPLPEHMRESWDTFG 332
>gi|395782689|ref|ZP_10463061.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
gi|395416567|gb|EJF82937.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
Length = 327
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 66/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+LV+ R++ A L + FR
Sbjct: 111 LAVQGGSGLMRHMDSMLEVWRNKK-GEKPRLVHRLDRETSGVLVVARSRGVAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 A--------------RETKKTYWALVRGVPKKKQDKISTWMVKEITTQG--DKMHVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+++ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 EP-DSHHAVSYYRILDTRGRTLSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDTKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L +VAPLP HM +S+++L+
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLLS 318
>gi|319408734|emb|CBI82391.1| ribosomal large subunit pseudouridine synthase C [Bartonella
schoenbuchensis R1]
Length = 326
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 129/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ ID + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 110 LAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQALTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + K G D++ V +
Sbjct: 169 A--------------RETKKTYWALVRGVPRKKQDKISTWMVKETTAQG--DKMRVCEHG 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 213 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDSKY----- 265
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D+N E+P G I Q RLHLH + + +P+ S I
Sbjct: 266 ----------FFSDNNWELP-------------GGI---QNRLHLHARRIRIPHPSGGI- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L ++APLP HM +S+++L
Sbjct: 299 ---------------LDIIAPLPPHMVQSFNLL 316
>gi|49474373|ref|YP_032415.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana str. Toulouse]
gi|49239877|emb|CAF26275.1| Ribosomal large subunit pseudouridine synthase c [Bartonella
quintana str. Toulouse]
Length = 327
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 130/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHFDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQTLTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS + K + G D++ V +
Sbjct: 170 A--------------RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMCVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDNPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P+ G+ Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWKLPR------GI----------QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++L
Sbjct: 300 ---------------LDITAPLPPHMVQSFNLL 317
>gi|409399405|ref|ZP_11249694.1| pseudouridine synthase [Acidocella sp. MX-AZ02]
gi|409131440|gb|EKN01147.1| pseudouridine synthase [Acidocella sp. MX-AZ02]
Length = 327
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 20/188 (10%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG GI +D + L ++ E P+LVHRLDRD+SG+LV+ R+ A L + FR
Sbjct: 108 LPVQGGSGIAVHVDGML-DALQGEHPERPKLVHRLDRDTSGVLVIARSAKVAAKLSAAFR 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ YWAL+VG P +G I PL + +D G++ R +
Sbjct: 167 --------------GRDVEKTYWALLVGLPDALEGRIDLPLKR--IDLGQTSRAEPASRK 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
AQ A+T Y+++ + + +LSP TGR HQLR HC LGTPI+GD YG H
Sbjct: 211 D-KEAQKAITDYRILDKAGRKFCLAELSPHTGRMHQLRAHCL-ALGTPILGDEVYGSAYH 268
Query: 181 RKW-KQFH 187
+ Q H
Sbjct: 269 EHFANQLH 276
>gi|149187024|ref|ZP_01865331.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
gi|148829313|gb|EDL47757.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
Length = 376
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 96/178 (53%), Gaps = 21/178 (11%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L + + PRLVHRLD+D+SGIL++ RT SA F
Sbjct: 112 LATQGGTNTFNHVDGLLDAYMEEGEEQRPRLVHRLDKDTSGILLVARTPGSAA-----FF 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS R ++ YWALVVG P +GVI APL K G+ ++ D
Sbjct: 167 SKRFSG---------RSAKKIYWALVVGVPDIRQGVIEAPLAKQPGSGGEK-----MHVD 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
A A T+Y+V++ + WL+L P+TGR HQLRVHCA +G PIVGD KYG +
Sbjct: 213 HEGGAP-AKTKYRVVESAGKKVAWLELQPMTGRTHQLRVHCA-AMGHPIVGDGKYGGK 268
>gi|452965910|gb|EME70927.1| 23S rRNA pseudouridylate synthase [Magnetospirillum sp. SO-1]
Length = 335
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + L++ P +LVHRLD+D+SG+L++GRT + L + F+
Sbjct: 115 LAVQGGTGMADKHLDAWLDALSFGAGRP-KLVHRLDKDTSGVLLLGRTANATAKLAAAFK 173
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR +G I APL K+ GK+ V+ +
Sbjct: 174 S--------------RAARKCYWALVAGVPRYPQGRIDAPLAKL---PGKAGEKVAVDKE 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+HAVT Y+V+ + WL++ P TGR HQLR HC +LGTPI+GD KYG
Sbjct: 217 D---GKHAVTYYRVVDSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKYGGAAA 272
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
L G+ + + +LHLH + + LP+
Sbjct: 273 ------------------------------LIEGTGVSR--KLHLHARAVRLPHPRTG-- 298
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ +++ APLPSH++ S+D
Sbjct: 299 -------------KPIEISAPLPSHIKASFDFFG 319
>gi|27380477|ref|NP_772006.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 110]
gi|27353641|dbj|BAC50631.1| bll5366 [Bradyrhizobium japonicum USDA 110]
Length = 405
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 126/278 (45%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID++ + + PRLVHR+D+D+SG L++ +T+ +A+ L FR
Sbjct: 184 LAVQGGSGTTRHIDQML-EVMRDSKGQKPRLVHRIDKDTSGCLLIAKTRFAASHLTGAFR 242
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 243 SRS--------------ARKVYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQH 285
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ + + TW+ L P+TGR HQLR H E +G PIVGD KY
Sbjct: 286 GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIEN 344
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 345 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 368
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HMQ+SW++L
Sbjct: 369 GGV----------------IDATAPLPPHMQQSWNLLG 390
>gi|386402208|ref|ZP_10086986.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
gi|385742834|gb|EIG63030.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
Length = 405
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 126/277 (45%), Gaps = 75/277 (27%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +A+ L FR
Sbjct: 184 LAVQGGSGMTRHIDQML-EVMRDSKGQKPRLVHRIDRETSGCLLVAKTRFAASHLTGAFR 242
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 243 SRS--------------ARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQH 285
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ + + TW+ L P+TGR HQLR H E +G PIVGD KY
Sbjct: 286 GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIEN 344
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 345 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 368
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
+ APLP HMQ+SW++L
Sbjct: 369 GGF----------------IDATAPLPQHMQQSWNLL 389
>gi|426400547|ref|YP_007019519.1| RluA family pseudouridine synthase [Candidatus Endolissoclinum
patella L2]
gi|425857215|gb|AFX98251.1| pseudouridine synthase, RluA family protein [Candidatus
Endolissoclinum patella L2]
Length = 348
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 24/177 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + +D A L ++ SE PRLVHRLD+ +SG+L++ R Q+SA L + FR
Sbjct: 128 LAVQGGSGLTKHVDG-ALDSLRFEASERPRLVHRLDKHTSGVLILARQQSSARRLINAFR 186
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K SA K Y ALV+G P+ + G I+ P+ KV N S+++ V
Sbjct: 187 AK--SAVK------------IYLALVIGEPKPAIGQINLPIAKVA--NKVSEKMMV---- 226
Query: 121 QIMSAQHAVTRYQVI-KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ +HA+TRY + K SCH T + L P+TGR HQLRVH A + GTPI+GD KYG
Sbjct: 227 DYENGKHALTRYSTLEKLSCH-ITLVALFPVTGRTHQLRVHMAGI-GTPILGDSKYG 281
>gi|398826077|ref|ZP_10584344.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
gi|398222009|gb|EJN08400.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
Length = 404
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 125/278 (44%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID++ + + PRLVHR+D+D+SG L++ +T+ +A+ L FR
Sbjct: 183 LAVQGGSGTTRHIDQML-EVMRDSKGQKPRLVHRIDKDTSGCLLIAKTRFAASHLTGAFR 241
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 242 SRS--------------ARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQH 284
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ + + TW+ L P+TGR HQLR H E +G PIVGD KY
Sbjct: 285 GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIEN 343
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 344 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 367
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ APLP HMQ+SW++L
Sbjct: 368 GGF----------------IDATAPLPQHMQQSWNLLG 389
>gi|126728208|ref|ZP_01744024.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
gi|126711173|gb|EBA10223.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
Length = 347
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 129/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G R +D L+ LT+ E PRLVHRLD+D+SG+L++ RT+ A L R
Sbjct: 109 LATQGGSGQTRHVDGLS-EALTFGMDEKPRLVHRLDKDTSGVLLLARTRAVAKALTEAIR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
R ++ YWALV G P G I L K G+++++ V+
Sbjct: 168 H--------------REARKIYWALVAGVPTPYLGEIKYGLVKAPGHGKGGEAEKMRCVH 213
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+I + A+ A T Y + +W+ + P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 214 PKEIATTEGAKRAHTLYATLYRVAGRASWVAMEPVTGRTHQLRAHMAEI-GHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G I+ K +LHLH + +TL
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLTL--- 305
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ K ++ APLP HM++SWD L
Sbjct: 306 LHPVTKTPFTA------------TAPLPEHMKQSWDTLG 332
>gi|170747290|ref|YP_001753550.1| RluA family pseudouridine synthase [Methylobacterium radiotolerans
JCM 2831]
gi|170653812|gb|ACB22867.1| pseudouridine synthase, RluA family [Methylobacterium radiotolerans
JCM 2831]
Length = 471
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 122/272 (44%), Gaps = 65/272 (23%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L A LT + PRLVHRLD+D++G L++ +T+ +A L FR
Sbjct: 250 VQGGSGTVRHVDGLLA-ALTGPDGQKPRLVHRLDKDTAGCLIIAKTRLAAATLAKSFRS- 307
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWAL G PR +G +S L K + + + D+
Sbjct: 308 -------------RAARKIYWALTAGVPRVRQGRVSTYLAKEEPTDADARMRVAKHGDE- 353
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA+T Y ++ + +WL P+TGR HQLR H A + G PIVGD KY
Sbjct: 354 -GASHALTYYAMVDQAAQKLSWLSFKPVTGRTHQLRAHAAHI-GHPIVGDPKY------- 404
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
N E+P G I Q RLHL + + +P+
Sbjct: 405 ---------FSVENWELP-------------GGI---QNRLHLLARRIVIPH-------P 432
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 433 RTGKPVDVS--------APLPPHMAQSWNLLG 456
>gi|319404393|emb|CBI77996.1| ribosomal large subunit pseudouridine synthase C [Bartonella
rochalimae ATCC BAA-1498]
Length = 327
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 128/273 (46%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHR+DR++SG+LV+ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRIDRETSGVLVVARSRGAAQALTAAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G PR + IS + + + G D++ V
Sbjct: 170 T--------------RETKKTYWALVRGVPRKKQDKISTWMVREITAQG--DKMRVCERR 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 Q-PDSNHAVSYYRVLDTRGKALSWLEMEPYTGRTHQLRVHAAYI-NHPIIGDSKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN ++P G + Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWDLP-------------GGM---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + APLP HM +S+++
Sbjct: 300 ---------------LDVTAPLPPHMVQSFNLF 317
>gi|182678295|ref|YP_001832441.1| RluA family pseudouridine synthase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634178|gb|ACB94952.1| pseudouridine synthase, RluA family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 350
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 73/289 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ ID++ A+ L + + P LVHRLDRD+SG+L++ +T+ A L IFR
Sbjct: 106 LAVQGGSGMTHHIDKMLAS-LPNERGDRPVLVHRLDRDTSGVLLVAKTRRMAAELGEIFR 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVIS-------------APLGKVVVD 107
R ++ YWA+V G P+ ++G IS P G+
Sbjct: 165 S--------------RQARKIYWAVVEGVPKPAQGRISLYLAKGEGMEDKRGPHGRDAEA 210
Query: 108 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 167
+++ V + + A+H+VT Y ++ WL + P+TGR HQLR H AE +G
Sbjct: 211 RAGLEKMRVAKHGE-EDARHSVTYYAIVDKVPSRLAWLSMKPITGRTHQLRAH-AEAIGH 268
Query: 168 PIVGDYKYGWQTHRKWKQFHPSDLSK--DSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
PI+GD KYG + P D + D N IP+ G++ +LHL
Sbjct: 269 PIIGDPKYGLK---------PKDDPRRNDPNRAIPE------GVER----------KLHL 303
Query: 226 HCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + LP+ I L + APLP HMQ+++D+
Sbjct: 304 LARRLILPHPRGGI----------------LDVTAPLPPHMQKTFDLFG 336
>gi|49475763|ref|YP_033804.1| ribosomal large subunit pseudouridine synthase c [Bartonella
henselae str. Houston-1]
gi|49238570|emb|CAF27811.1| Ribosomal large subunit pseudouridine synthase c [Bartonella
henselae str. Houston-1]
Length = 327
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + E PRLVHRLDR++SG+L++ R++ +A L + FR
Sbjct: 111 LAVQGGSGLTRHVDSMLRVWRNKK-GEKPRLVHRLDRETSGVLIVARSRGAAQALTTAFR 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ + IS + K + + + D++ V +
Sbjct: 170 T--------------RETKKTYWALVRGVPKKKQDKISTWMVKDI--STQVDKMRVCEHG 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD KY
Sbjct: 214 E-PDSYHAVSYYRVVDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDAKY----- 266
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DSN +P G I Q RLHLH + + +P+ S I
Sbjct: 267 ----------FFSDSNWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI- 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L +VAPLP HM +S+++L
Sbjct: 300 ---------------LDIVAPLPPHMVQSFNLL 317
>gi|456354592|dbj|BAM89037.1| ribosomal large subunit pseudouridine synthase C [Agromonas
oligotrophica S58]
Length = 468
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 125/274 (45%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +AT L FR
Sbjct: 247 LAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLTGAFR 305
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I V
Sbjct: 306 SRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEDDTIMRVAAH 348
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + G PIVGD KY
Sbjct: 349 GDEGASHAVTYYAVVEASASKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----- 402
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
F+ + + L GL Q RLHL + + +P+
Sbjct: 403 -----FNIENWA------------LPGGL----------QNRLHLLARRIVIPHPRGGF- 434
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ APLP HM +SW++L
Sbjct: 435 ---------------IDATAPLPPHMLQSWNLLG 453
>gi|384921230|ref|ZP_10021218.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
gi|384464864|gb|EIE49421.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
Length = 352
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 128/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG G R +D +A L + E PRLVHRLD+D+SG+L++ RT+ +A L + R
Sbjct: 114 LPTQGGSGQLRHVDGMA-DALRFGMDEKPRLVHRLDKDTSGVLLLARTREAAQALTAALR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
K ++ YWA+V G P G I L K G+++++ V+
Sbjct: 173 HKQ--------------TRKIYWAVVAGVPTPYLGEIRYGLVKARGHGKGGEAEKMVCVH 218
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
I + A+ A T Y + +W+ L PLTGR HQLR H AE+ G PI+GD KY
Sbjct: 219 PRDIGTTEGAKRAHTLYATLYRVASRASWVALEPLTGRTHQLRAHMAEI-GHPIIGDGKY 277
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E + G + G ++ K +LHLH + M+ +
Sbjct: 278 G-----------------GSGQE-----NMGDGWGAQLGGVISK--KLHLHARSMSFEHP 313
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+T+ + APLP HM+ +WD
Sbjct: 314 RTR---------------KTITVTAPLPDHMKHTWDTFG 337
>gi|393768106|ref|ZP_10356648.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392726499|gb|EIZ83822.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 469
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 122/272 (44%), Gaps = 65/272 (23%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L A LT + PRLVHRLD+D++G L++ +T+ +A L FR
Sbjct: 248 VQGGSGTVRHVDGLLA-ALTGPDGQKPRLVHRLDKDTAGCLIIAKTRLAAATLAKSFRS- 305
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWAL G PR +G +S L K + + + D+
Sbjct: 306 -------------RAARKIYWALTAGVPRVRQGRVSTYLAKDEPTDADARMRVAKHGDE- 351
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA+T Y ++ + +WL P+TGR HQLR H A + G PIVGD KY
Sbjct: 352 -GASHALTYYAMVDQAAQKLSWLSFKPVTGRTHQLRAHAAHI-GHPIVGDPKY------- 402
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
N E+P G I Q RLHL + + +P+
Sbjct: 403 ---------FSVENWELP-------------GGI---QNRLHLLARRIVIPH-------P 430
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 431 RTGRPVDVS--------APLPPHMAQSWNLLG 454
>gi|383771170|ref|YP_005450235.1| putative ribosomal large subunit pseudouridine synthase C
[Bradyrhizobium sp. S23321]
gi|381359293|dbj|BAL76123.1| putative ribosomal large subunit pseudouridine synthase C
[Bradyrhizobium sp. S23321]
Length = 406
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 125/276 (45%), Gaps = 75/276 (27%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G+ R ID++ + + PRLVHR+DR++SG L++ +T+ +A+ L FR +
Sbjct: 187 VQGGSGMTRHIDQML-EVMRDSKGQKPRLVHRIDRETSGCLLIAKTRFAASYLTGEFRSR 245
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 246 S--------------ARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGD 288
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQ 178
A HAVT Y V++ + + TW+ L P+TGR HQLR H A + G PIVGD KY WQ
Sbjct: 289 EGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKYFNIENWQ 347
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
L GL Q RLHL + + +P+
Sbjct: 348 --------------------------LPGGL----------QNRLHLLARRIVIPHPRGG 371
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 372 V----------------IDATAPLPPHMLQSWNLLG 391
>gi|407788345|ref|ZP_11135477.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
gi|407197626|gb|EKE67680.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
Length = 348
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 127/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG R +D LA L + E PRLVHRLD+D+SG+L++ RT AT L FR
Sbjct: 110 LPTQGGSKQTRHVDGLA-EALKFGLEEKPRLVHRLDKDTSGVLILARTPAMATKLTEAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
K N ++I YWALV G P G I L K G+ +++ ++
Sbjct: 169 HK----------NTRKI----YWALVAGVPVPYLGEIKYGLMKAGGHGARGEGEKMIAIH 214
Query: 119 NDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ + A+ A T Y + +W+ + P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 215 PRDMNANPDAKRAHTLYATLYRVGSRASWVAMEPITGRTHQLRAHMAEI-GHPIIGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G I+ K +LHLH + +T +
Sbjct: 274 G-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLTFEH- 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
KV + + APLP HM+ SWD
Sbjct: 309 -PVTHKV-------------ITVTAPLPEHMRNSWDTFG 333
>gi|114771239|ref|ZP_01448659.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2255]
gi|114548164|gb|EAU51051.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2255]
Length = 348
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 130/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D L+A L +D P+LVHRLD+D+SG+L++ RT +A+ L F
Sbjct: 110 LAVQGGSGQMRHVDGLSA-ALKFDLENKPKLVHRLDKDTSGVLLLARTGLAASGLTKAF- 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVN 118
+ R ++ YWA V G P G I L K NG +++ ++
Sbjct: 168 -------------QSRETRKIYWAAVAGCPHPKIGTIKYGLIKAGGHGPNGSGEKMQCIH 214
Query: 119 NDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++ A+HA T Y V++ +W+ L P+TGR HQLR H AE LG PIVGD KY
Sbjct: 215 PSEVTDMPDAKHATTDYTVLEDVGKRASWVALVPITGRTHQLRAHMAE-LGNPIVGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G T + D + G + G + + ++HLH + +T +
Sbjct: 274 GTNTQ-----------TNDGD-----------GWGAQLGGDISR--KMHLHARSITFTH- 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
++K E + + A LP HM+++W
Sbjct: 309 -------------PITKKE-IHITAELPDHMEKTWTTFG 333
>gi|90424892|ref|YP_533262.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB18]
gi|90106906|gb|ABD88943.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisB18]
Length = 501
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 122/275 (44%), Gaps = 75/275 (27%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L + + PRLVHRLD++++G L++ +T+ +AT L FRE+
Sbjct: 282 VQGGSGTTRHVD-LMLEVMRDAKGQKPRLVHRLDKETAGCLLIAKTRFAATALTGAFRER 340
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 341 S--------------ARKVYWALVAGVPKPKQGRISTYLAK---EESEDDTIMRIAEHGD 383
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQ 178
A HAVT Y V++ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 384 EGASHAVTYYAVVETSASKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ 442
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
L GL Q RLHL + + +P+
Sbjct: 443 --------------------------LPGGL----------QNRLHLLARRIVIPHPRGG 466
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
T+ + APLP HM +SW++L
Sbjct: 467 ----------------TIDVSAPLPPHMLQSWNLL 485
>gi|326388341|ref|ZP_08209937.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207073|gb|EGD57894.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
nitrogenifigens DSM 19370]
Length = 436
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 119/274 (43%), Gaps = 70/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G +D L D PRLVHRLD+D+SG+L++ RT SA F
Sbjct: 117 LATQGGSGTHSHVDGLL-DAYAGDNDPRPRLVHRLDKDTSGVLLIARTPGSAAYFSRHF- 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV+G P + G I PL K G +++ V D
Sbjct: 175 -------------SGRSAKKIYWALVMGIPEINDGYIDLPLAKQPGTGG--EKMMV---D 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 217 ESGEGQTARTRYRVIDRAGNRAAWVELQPLTGRTHQLRVHMA-AIGHPIVGDGKYGGQAA 275
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
SGSI K LHLH + + +P+
Sbjct: 276 ------------------------------FLSGSISRK---LHLHARRLLIPH------ 296
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ +T+ +VAPLP H S L
Sbjct: 297 ----------PEGDTIDVVAPLPEHFAASLAQLG 320
>gi|384263153|ref|YP_005418341.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
gi|378404255|emb|CCG09371.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
Length = 372
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 111/240 (46%), Gaps = 55/240 (22%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G +D + E PRLVHRLD+D+SG+LV+ RTQ +A L + FR
Sbjct: 135 VQGGTGTDHHLDAMLDAL--AGGGERPRLVHRLDKDTSGVLVLARTQAAARFLTAAFR-- 190
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R + YWALVVG P +G + L K G+ +R+ V D
Sbjct: 191 ------------ARDTLKVYWALVVGRPPLEQGTMRGALAKEA--RGRGERMVVNEED-- 234
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
+ A+T ++VI + WL L P TGR HQLRVHC E +G PI+GD KYG Q
Sbjct: 235 --GRPAITDFRVIDQAVGACAWLDLRPRTGRTHQLRVHCLE-MGIPILGDGKYGGQ---- 287
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
F P E+P + RLHLH + + +P+ + +V
Sbjct: 288 -GAFLP---------ELPVAR------------------RLHLHARALAIPHPKGNVLRV 319
>gi|431806514|ref|YP_007233415.1| Ribosomal large subunit pseudouridine synthase C [Liberibacter
crescens BT-1]
gi|430800489|gb|AGA65160.1| Ribosomal large subunit pseudouridine synthase C [Liberibacter
crescens BT-1]
Length = 327
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 66/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI +D L E PRLVHRLDR++SGI V+ RT+ +A
Sbjct: 113 LAVQGGSGISLHMDYLLEAWRNAK-GEKPRLVHRLDRETSGIFVVARTRNAA-------- 163
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++FS + + + EK YW LV G P+ +G IS+ L + + SD + V +
Sbjct: 164 -QSFSEAFRNRNTEKT-----YWLLVKGVPKKYEGRISSWL--IKKEGIGSDYVKVAMHG 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAV+ ++VI+ + WL++ P TGR HQLRVH + G PI+GD KY
Sbjct: 216 E-KGAGHAVSYFKVIQTVAKKFCWLEMKPYTGRTHQLRVHALHI-GHPIIGDTKY----- 268
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
D N +P+ + KQ LHLH + + +P+ S
Sbjct: 269 ----------FINDPNWHLPEN--------------IPKQ--LHLHARYIDIPHPSGG-- 300
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L++ APLPSHM ++W++L
Sbjct: 301 --------------RLQVTAPLPSHMVQTWNLL 319
>gi|299135225|ref|ZP_07028416.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
gi|298590202|gb|EFI50406.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
Length = 413
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 124/278 (44%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D++ + + PRLVHRLDR++SG L++ +T+ +A+VL FR
Sbjct: 192 LAVQGGSGLSRHVDQML-EVMRDAKGQRPRLVHRLDRETSGCLLIAKTRFAASVLTGSFR 250
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 251 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRIAEH 293
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ S W+ L P+TGR HQLR H A + IVGD KY
Sbjct: 294 GDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKYFNKEN 352
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 353 WQ--------------------------LPGGL----------QKRLHLLARRIVIPHPR 376
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + APLP HM +SW++L
Sbjct: 377 GGV----------------IDVTAPLPPHMLQSWNLLG 398
>gi|323138142|ref|ZP_08073215.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
gi|322396604|gb|EFX99132.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
Length = 351
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 125/280 (44%), Gaps = 63/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G +R +D + + D P LVHRLDRD+SG+L++ +T+ A L IFR
Sbjct: 114 LATQGGSGQKRHVDGMLESLARGDSR--PVLVHRLDRDTSGVLLVAKTRRMAADLGEIFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV----VDNGKSD--RI 114
R ++ YWALV G P+ ++G +S L K G D ++
Sbjct: 172 S--------------RQAKKIYWALVEGVPKPAQGRVSLYLAKGAGMEKARGGGRDLEKM 217
Query: 115 TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
V + + AQH++T Y ++ WL + PLTGR HQLR H AE +G PI GD K
Sbjct: 218 RVAKHGEA-DAQHSLTYYAIVDKVAPRCAWLSMKPLTGRTHQLRAH-AEAIGHPIFGDPK 275
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG + ++ P D E +LHL + + LP+
Sbjct: 276 YGRRPEDDVRRRDPLRAMPDGLER-----------------------KLHLLARRLVLPH 312
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ TL + APLP HMQ+SW++
Sbjct: 313 ----------------PRGGTLDVTAPLPPHMQKSWELFG 336
>gi|316933564|ref|YP_004108546.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
DX-1]
gi|315601278|gb|ADU43813.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
DX-1]
Length = 455
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 124/278 (44%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID++ L + PRLVHR+D++++G L++ +T+ +AT L FR
Sbjct: 234 LAVQGGSGTTRHIDQML-EVLRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFR 292
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D + D I V
Sbjct: 293 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---DESEEDSIMRVAKH 335
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ S W+ L P+TGR HQLR H A + G IVGD KY
Sbjct: 336 GDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIEN 394
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 395 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 418
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 419 GGV--------IDVS--------APLPPHMLQSWNLLG 440
>gi|114766871|ref|ZP_01445793.1| ribosomal large subunit pseudouridine synthase C [Pelagibaca
bermudensis HTCC2601]
gi|114540917|gb|EAU43977.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
HTCC2601]
Length = 350
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 130/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D LA L +DY E PRLVHRLD+D+SG+L++ RT+ A L R
Sbjct: 112 LPVQGGSKQERHVDGLA-EALRFDYDEKPRLVHRLDKDTSGVLLLARTREIAQALTGAIR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
K ++ YWA+V G P G I L K +G+ +++ V+
Sbjct: 171 HKQ--------------TRKIYWAVVAGVPTPYLGEIRFGLVKAPGHGKSGEGEKMICVH 216
Query: 119 N---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D+ A+ A T Y + +W+ L P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 217 PREMDRTPGAKRAHTLYATLYRVAGRASWVALEPITGRTHQLRAHMAEI-GHPIIGDGKY 275
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G ++ K +LHLH + MT +
Sbjct: 276 G-----------------GSGQE-----NLGDGWGAQLGGVISK--KLHLHARSMTFLH- 310
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
V+K + + + A LP+HM +W+ L
Sbjct: 311 -------------PVTK-KPVTVTASLPAHMANTWETLG 335
>gi|144899540|emb|CAM76404.1| ribosomal large subunit pseudouridine synthase C [Magnetospirillum
gryphiswaldense MSR-1]
Length = 333
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + L +D + PRLVHRLD+D+SG+L++GR+ +A L + F+
Sbjct: 112 IAVQGGTGTGDKHIDAWLDALMFDRDDRPRLVHRLDKDTSGVLLLGRSANAAAKLAAAFK 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALVVG P+ +G I A L K+ G++ V+ D
Sbjct: 172 S--------------RAARKCYWALVVGVPKLRQGRIDAALAKL---PGRAGEKMAVDED 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + AVT Y+V+ + WL++ P TGR HQLR H A ++GTPI+GD KYG
Sbjct: 215 E---GKRAVTWYRVVDNALRKAAWLEMEPRTGRTHQLRAHTA-LMGTPIMGDGKYGGTEA 270
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
SG+ + + ++HLH + + +P+
Sbjct: 271 ------------------------------FISGTGVSR--KMHLHARAVRIPHPRTG-- 296
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L +VAPLP HM++S++
Sbjct: 297 -------------KELVVVAPLPEHMEKSFEFFG 317
>gi|84515664|ref|ZP_01003025.1| ribosomal large subunit pseudouridine synthase C [Loktanella
vestfoldensis SKA53]
gi|84510106|gb|EAQ06562.1| ribosomal large subunit pseudouridine synthase C [Loktanella
vestfoldensis SKA53]
Length = 351
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 128/280 (45%), Gaps = 62/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG R +D +A L + Y E PRLVHRLDRD+SG+L++ RT+ A
Sbjct: 112 LATQGGTNTTRHVDGMA-EALMFGYDEKPRLVHRLDRDTSGVLLLARTRMMA-------- 162
Query: 61 EKTFSASKEDNDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVV 117
K+ +N K R ++ YWA V G P G I L K G+++++ V
Sbjct: 163 -------KQLTENLKHRETRKIYWAAVAGVPHPRAGTIKYGLVKAPGHGKGGENEKMRCV 215
Query: 118 NNDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ ++I S A+ A + Y V+ W L P+TGR HQLR H AE+ G PI+GD K
Sbjct: 216 HPNEIASTEGAKRATSDYAVMDTLASRAAWCALVPITGRTHQLRAHMAEI-GHPIIGDGK 274
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG ++ L G GS + + ++HLH + +T+ +
Sbjct: 275 YGGS----------------------GQENLGDGWGASMGSEIGR--KMHLHARSLTIEH 310
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ +TL L A LP HMQ +WD +
Sbjct: 311 PATG---------------KTLHLTADLPEHMQNTWDFVG 335
>gi|217976287|ref|YP_002360434.1| RluA family pseudouridine synthase [Methylocella silvestris BL2]
gi|217501663|gb|ACK49072.1| pseudouridine synthase, RluA family [Methylocella silvestris BL2]
Length = 349
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 130/287 (45%), Gaps = 71/287 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+RR ID + A+ L + + P LVHRLDRD+SG+L++ +T+ A L IFR
Sbjct: 107 LAVQGGSGMRRHIDGMLAS-LPNERGDRPVLVHRLDRDTSGVLLIAKTRKMAADLGEIFR 165
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R Q+ YWALV G P+ ++G IS L K G R +++
Sbjct: 166 S--------------RQAQKIYWALVEGVPKPAQGKISLFLAK---GEGMDARGPRRSDE 208
Query: 121 QIMS-------------AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 167
+ S AQH+VT Y + WL + P+TGR HQLR H AE +G
Sbjct: 209 ERASMEKMRVAKHGDEDAQHSVTYYATVDTFSPRAAWLSMKPITGRTHQLRAH-AEAIGH 267
Query: 168 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 227
PI+GD KYG + ++ D IP+ +E+ +LHL
Sbjct: 268 PIIGDPKYGLRPKTDPRR-------NDPLRAIPE--------------TIER--KLHLLA 304
Query: 228 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + LP+ + L + APLP HM S++
Sbjct: 305 RRLVLPHPRGGV----------------LDVTAPLPPHMANSFETFG 335
>gi|75675586|ref|YP_318007.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74420456|gb|ABA04655.1| ribosomal large subunit pseudouridine synthase C [Nitrobacter
winogradskyi Nb-255]
Length = 412
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 128/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + T + + PRLVHRLDR+++G L++ +T+ +AT L FR
Sbjct: 191 LAVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRETAGCLLIAKTRFAATALTGAFR 249
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + RI ++
Sbjct: 250 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAKEENEEESIMRIAAHGDE 295
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + G I+GD KY
Sbjct: 296 ---GASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIIGDPKY----- 346
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N ++P GL Q RLHL + + +P+ +
Sbjct: 347 ----------FNKE-NWQLPG------GL----------QNRLHLLARRIVIPHPRGGV- 378
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
D S APLP HM +SW++L
Sbjct: 379 -------IDAS--------APLPPHMLQSWNLLG 397
>gi|39936271|ref|NP_948547.1| pseudouridine synthase [Rhodopseudomonas palustris CGA009]
gi|39650126|emb|CAE28649.1| possible ribosomal large subunit pseudouridine synthase C
[Rhodopseudomonas palustris CGA009]
Length = 455
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 124/278 (44%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID++ L + PRLVHR+D++++G L++ +T+ +AT L FR
Sbjct: 234 LAVQGGSGTTRHIDQML-EVLRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFR 292
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K D + D I V
Sbjct: 293 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---DESEEDSIMRVAKH 335
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ S W+ L P+TGR HQLR H A + G IVGD KY
Sbjct: 336 GDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIEN 394
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 395 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 418
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 419 GGV--------IDVS--------APLPPHMLQSWNLLG 440
>gi|115525546|ref|YP_782457.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
BisA53]
gi|115519493|gb|ABJ07477.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisA53]
Length = 458
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 124/272 (45%), Gaps = 67/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L + + PRLVHRLD++++G L++ +T+ +AT L FR +
Sbjct: 239 VQGGSGTTRHVD-LMLEVMRDSKGQKPRLVHRLDKETAGCLLVAKTRFAATALTGSFRSR 297
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+ ++ YWALV G P+ +G IS L K D + D I V
Sbjct: 298 S--------------ARKVYWALVAGVPKPKQGRISTYLAK---DESEDDSIMRVAAHGD 340
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HAVT Y V++ S W+ L P+TGR HQLR H A + G I+GD KY
Sbjct: 341 EGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIIGDPKY------- 392
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
F+ N E+P GL Q RLHL + + +P+ +
Sbjct: 393 ---FN------IENWELPG------GL----------QKRLHLLARRIAIPHPRGGV--- 424
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 425 -------------IDVTAPLPPHMLQSWNLLG 443
>gi|86135800|ref|ZP_01054379.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
gi|85826674|gb|EAQ46870.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
Length = 348
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 127/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D LA L +D E PRLVHRLD+D+SG+LV+ R + +A L + FR
Sbjct: 110 LAVQGGSGTTKHVDGLA-DALRFDAEEKPRLVHRLDKDTSGVLVLARNRLAAKSLTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV--- 117
+ N ++I YWALV G P G I A L K + ++
Sbjct: 169 HR----------NTRKI----YWALVAGVPTPYLGEIKAGLVKAGGHGAGGEGEKMIAVH 214
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D+ A+ A T Y + +W+ + P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 215 PNEIDRTPGAKRAHTYYATLYRVAGRASWVAMEPVTGRTHQLRAHMAEI-GHPIIGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G ++ K +LHLH + + +
Sbjct: 274 G-----------------GSGQE-----NLGDGWGAQLGGVISK--KLHLHARRLVFEHP 309
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + ++A LPSHM+ SW+
Sbjct: 310 TTK---------------KDIVMMAELPSHMKDSWETFG 333
>gi|163849730|ref|YP_001637773.1| RluA family pseudouridine synthase [Methylobacterium extorquens
PA1]
gi|163661335|gb|ABY28702.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
PA1]
Length = 468
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 125/273 (45%), Gaps = 67/273 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L LT + PRLVHRLD+D++G L++ +T+ +A+ L FR
Sbjct: 247 VQGGSGTVRHVDGLL-EALTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRS- 304
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQ 121
R ++ YWALV G PR +G +S L K D R+ +D
Sbjct: 305 -------------RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD- 350
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
A HA+T Y + + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 351 --GASHALTYYATVDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY------ 401
Query: 182 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 241
D+ N E+P G I Q RLHL + + +P+ + Q
Sbjct: 402 -------FDV---ENWELP-------------GGI---QNRLHLLARRIVIPH-PRTGQP 434
Query: 242 VQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
V +S APLP HM +SW++L
Sbjct: 435 VDVS--------------APLPPHMAQSWNLLG 453
>gi|209884846|ref|YP_002288703.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|337741510|ref|YP_004633238.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM5]
gi|386030526|ref|YP_005951301.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM4]
gi|209873042|gb|ACI92838.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
gi|336095594|gb|AEI03420.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM4]
gi|336099174|gb|AEI06997.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM5]
Length = 412
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 127/274 (46%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + + + PRLVHRLDR++SG L++ +T+ +A+ L FR
Sbjct: 191 LAVQGGSGLTRHVDGML-EVMRDAKGQRPRLVHRLDRETSGCLLIAKTRFAASTLTGSFR 249
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 250 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRIAAH 292
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + G IVGD KY
Sbjct: 293 GDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKY----- 346
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N ++P GL Q RLHL + + +P+ +
Sbjct: 347 ----------FNKE-NWQLPG------GL----------QNRLHLLARRIVIPHPRGGV- 378
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 379 ---------------IDVTAPLPPHMLQSWNLLG 397
>gi|188579622|ref|YP_001923067.1| pseudouridine synthase [Methylobacterium populi BJ001]
gi|179343120|gb|ACB78532.1| pseudouridine synthase, RluA family [Methylobacterium populi BJ001]
Length = 446
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 123/272 (45%), Gaps = 65/272 (23%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L LT + PRLVHRLD+D++G L++ +T+ +A L FR
Sbjct: 225 VQGGSGTVRHVDGLL-EALTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAAATLAKSFRS- 282
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R ++ YWALV G PR +G +S L K + + + D+
Sbjct: 283 -------------RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDE- 328
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HA+T Y + + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 329 -GASHALTYYATVDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY------- 379
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D+ N E+P G I Q RLHL + + +P+
Sbjct: 380 ------FDV---ENWELP-------------GGI---QNRLHLLARRIVIPH-------P 407
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 408 RTGQPVDVS--------APLPPHMAQSWNLLG 431
>gi|218528371|ref|YP_002419187.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218520674|gb|ACK81259.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
CM4]
Length = 468
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 124/273 (45%), Gaps = 67/273 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L LT + PRLVHRLD+D++G L++ +T+ +A+ L FR
Sbjct: 247 VQGGSGTVRHVDGLL-EALTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRS- 304
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQ 121
R ++ YWALV G PR +G +S L K D R+ +D
Sbjct: 305 -------------RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD- 350
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
A HA+T Y + + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 351 --GASHALTYYATVDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY------ 401
Query: 182 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 241
D+ N E+P G I Q RLHL + + +P+
Sbjct: 402 -------FDV---ENWELP-------------GGI---QNRLHLLARRIVIPH------- 428
Query: 242 VQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 429 PRTGQPVDVS--------APLPPHMAQSWNLLG 453
>gi|89070524|ref|ZP_01157813.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
gi|89043831|gb|EAR50029.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
Length = 348
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 125/279 (44%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG R +D L+A LT+ E PRLVHRLD+D+SGIL++ RT+ +A L FR
Sbjct: 109 LPTQGGSRQTRHVDGLSA-ALTFGLEEKPRLVHRLDKDTSGILLLARTRAAAKGLTDAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVN 118
R ++ YWA V G P G + L K G+++++ ++
Sbjct: 168 S--------------RETRKIYWAAVAGVPHPRMGTVKYGLVKQPGHGARGENEKMRCIH 213
Query: 119 NDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D+++ A+ AVT Y VI+ W+ L P+TGR HQLR H AE LG PI GD KY
Sbjct: 214 PDEVLRTPDAKRAVTDYAVIETLARRAAWVALVPVTGRTHQLRAHMAE-LGHPIAGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G +E G I K L LH + ++L
Sbjct: 273 GGSG---------------------QENLGDGWGAGLGGDISRK---LQLHARSLSL--- 305
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
SG ++ APLP HM R+W+ +
Sbjct: 306 ------THPVSGARMT------FTAPLPDHMARTWEYVG 332
>gi|148259184|ref|YP_001233311.1| RluA family pseudouridine synthase [Acidiphilium cryptum JF-5]
gi|326402337|ref|YP_004282418.1| pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|338983760|ref|ZP_08632919.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
gi|146400865|gb|ABQ29392.1| ribosomal large subunit pseudouridine synthase C [Acidiphilium
cryptum JF-5]
gi|325049198|dbj|BAJ79536.1| pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|338207305|gb|EGO95283.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
Length = 324
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 124/275 (45%), Gaps = 71/275 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG GI R +D + L +D +E PRLVHRLDRD+SG+LV+ R
Sbjct: 108 LATQGGKGIARHLDGML-DALRFDAAERPRLVHRLDRDTSGVLVLARNAF---------- 156
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+A++ R +++ YWA+VVG P +G I PL ++ G R +++
Sbjct: 157 ----AANRLAAAFRGRDMEKTYWAIVVGLPIPMEGQIDLPLARIGGAQGARTRPADRDDE 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A A+T Y+ + + ++WL+L PLTGR HQLR HCA + GTPI+GD YG
Sbjct: 213 ---DAAKAITDYRTLDHAGRKFSWLELHPLTGRTHQLRAHCAAI-GTPILGDAPYG---- 264
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPR-LHLHCKEMTLPNVSQAI 239
E + E PR LHLH + + LP+
Sbjct: 265 -------------------------------EHLAFAEGFPRQLHLHARRLVLPH----- 288
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L + A LP+HM+ ++ L
Sbjct: 289 -----------PRGGRLSVEAELPAHMKTTFATLG 312
>gi|254558792|ref|YP_003065887.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
gi|254266070|emb|CAX21822.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
Length = 468
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 124/273 (45%), Gaps = 67/273 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L LT + PRLVHRLD+D++G L++ +T+ +A+ L FR
Sbjct: 247 VQGGSGTVRHVDGLL-EALTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRS- 304
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQ 121
R ++ YWALV G PR +G +S L K D R+ +D
Sbjct: 305 -------------RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD- 350
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
A HA+T Y + + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 351 --GASHALTYYATVDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY------ 401
Query: 182 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 241
D+ N E+P G I Q RLHL + + +P+
Sbjct: 402 -------FDV---ENWELP-------------GGI---QNRLHLLARRIVIPH------- 428
Query: 242 VQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 429 PRTGQPVDVS--------APLPPHMAQSWNLLG 453
>gi|338975000|ref|ZP_08630355.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
gi|338231599|gb|EGP06734.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
Length = 424
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 126/274 (45%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + +D++ + + PRLVHRLDR++SG L++ +T+ +A+ L FR
Sbjct: 203 LAVQGGSGMTKHVDQML-EVMRDAKGQKPRLVHRLDRETSGCLLIAKTRFAASALTGSFR 261
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I V
Sbjct: 262 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRVAEH 304
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + IVGD KY
Sbjct: 305 GDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHMAHI-NHAIVGDPKY----- 358
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N ++P G I Q RLHL + + +P+
Sbjct: 359 ----------FNKE-NWQLP-------------GGI---QKRLHLLARRIVIPHPRGGF- 390
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 391 ---------------IDVTAPLPPHMLQSWNLLG 409
>gi|240136939|ref|YP_002961408.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|418058116|ref|ZP_12696096.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
gi|240006905|gb|ACS38131.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|373568325|gb|EHP94274.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
Length = 463
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 124/273 (45%), Gaps = 67/273 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R +D L LT + PRLVHRLD+D++G L++ +T+ +A+ L FR
Sbjct: 242 VQGGSGTVRHVDGLL-EALTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRS- 299
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQ 121
R ++ YWALV G PR +G +S L K D R+ +D
Sbjct: 300 -------------RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD- 345
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
A HA+T Y + + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 346 --GASHALTYYATVDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY------ 396
Query: 182 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 241
D+ N E+P G I Q RLHL + + +P+
Sbjct: 397 -------FDV---ENWELP-------------GGI---QNRLHLLARRIVIPH------- 423
Query: 242 VQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 424 PRTGQPVDVS--------APLPPHMAQSWNLLG 448
>gi|23012328|ref|ZP_00052441.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 456
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 124/275 (45%), Gaps = 67/275 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D L LT + PRLVHRLD+D++G L++ +T+ +A L FR
Sbjct: 233 LAVQGGSGTVRHVDGLL-EALTGPDGQRPRLVHRLDKDTAGCLIIAKTRLAAATLAKSFR 291
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNN 119
R ++ YWALV G PR +G +S L K D R+ +
Sbjct: 292 S--------------RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGD 337
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
D A HA+T Y + + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 338 D---GASHALTYYATVDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY---- 389
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
D+ N E+P G I Q RLHL + + +P+
Sbjct: 390 ---------FDV---ENWELP-------------GGI---QNRLHLLARRIVIPH----- 416
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 417 --PRTGQPVDVS--------APLPPHMAQSWNLLG 441
>gi|87200850|ref|YP_498107.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
aromaticivorans DSM 12444]
gi|87136531|gb|ABD27273.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
aromaticivorans DSM 12444]
Length = 436
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 112/247 (45%), Gaps = 48/247 (19%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G +D L + + P RLVHRLD+D+SG+L++ RT SA F
Sbjct: 120 LATQGGSGTHEHVDGLLDAYVNEGEARP-RLVHRLDKDTSGVLLIARTPGSAA-----FF 173
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS R ++ YWALVVG P G+I PL K G+ + D
Sbjct: 174 SKRFSC---------RSARKIYWALVVGVPDVKDGLIELPLAKQPGTGGEKMMV-----D 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ Q A +RY+VI + + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 220 ESGQGQSARSRYRVISRAGNAAAWVELQPLTGRTHQLRVHMA-AIGHPIVGDGKYGGQAA 278
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 226
R+ + HP D +P HF + S L H
Sbjct: 279 FLTGSISRKMHLHARRLRIEHPEGDMIDVTAPLP----AHFAASMAS---------LGFH 325
Query: 227 CKEMTLP 233
+E LP
Sbjct: 326 EEEGDLP 332
>gi|414167314|ref|ZP_11423543.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410891131|gb|EKS38929.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 415
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 126/274 (45%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + +D++ + + PRLVHRLDR++SG L++ +T+ +A+ L FR
Sbjct: 194 LAVQGGSGMTKHVDQML-EVMRDAKGQKPRLVHRLDRETSGCLLIAKTRFAASALTGSFR 252
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I V
Sbjct: 253 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRVAEH 295
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + IVGD KY
Sbjct: 296 GDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHMAHI-NHAIVGDPKY----- 349
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N ++P G I Q RLHL + + +P+
Sbjct: 350 ----------FNKE-NWQLP-------------GGI---QKRLHLLARRIVIPHPRGGF- 381
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 382 ---------------IDVTAPLPPHMLQSWNLLG 400
>gi|414174042|ref|ZP_11428669.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410890676|gb|EKS38475.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 408
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 126/274 (45%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ + +D++ + + PRLVHRLDR++SG L++ +T+ +A+ L FR
Sbjct: 187 LAVQGGSGMTKHVDQML-EAMRDAKGQKPRLVHRLDRETSGCLLIAKTRFAASALTGSFR 245
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I V
Sbjct: 246 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRVAAH 288
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + IVGD KY
Sbjct: 289 GDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKY----- 342
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N E+P G I Q RLHL + + +P+
Sbjct: 343 ----------FNKE-NWELP-------------GGI---QKRLHLLARRIVIPHPRGGF- 374
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 375 ---------------IDVTAPLPPHMLQSWNLLG 393
>gi|402826617|ref|ZP_10875794.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
gi|402259851|gb|EJU10037.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
Length = 426
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 25/179 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEP-PRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ QGG G++ +D L Y P PRLVHRLD+D+SG+L++ RT SA F
Sbjct: 114 LATQGGSGMKEHVDGL---LDAYVEKGPRPRLVHRLDKDTSGVLLIARTPGSAA-----F 165
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
K FS R ++ YWALVVG P + G+I PL K G +++ V
Sbjct: 166 FSKRFSG---------RTAKKIYWALVVGVPSINDGMIELPLAKQPGTGG--EKMHVDEK 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 215 E----GQTARTRYRVIDRAGNRAAWVELHPLTGRTHQLRVHMA-AIGHPIVGDGKYGGQ 268
>gi|192291994|ref|YP_001992599.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
TIE-1]
gi|192285743|gb|ACF02124.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
TIE-1]
Length = 455
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 124/278 (44%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID++ L + PRLVHR+D++++G L++ +T+ +AT L FR
Sbjct: 234 LAVQGGSGTTRHIDQML-EVLRDAKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFR 292
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I V
Sbjct: 293 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEDDSIMRVAKH 335
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ S W+ L P+TGR HQLR H A + G IVGD KY
Sbjct: 336 GDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIEN 394
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 395 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 418
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW++L
Sbjct: 419 GGV--------IDVS--------APLPPHMLQSWNLLG 440
>gi|91977597|ref|YP_570256.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB5]
gi|91684053|gb|ABE40355.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisB5]
Length = 444
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 122/272 (44%), Gaps = 67/272 (24%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G R ID L + + PRLVHR+D++++G L++ +T+ +AT L FR +
Sbjct: 225 VQGGSGTTRHID-LMLEVMRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRSR 283
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+ ++ YWALV G P+ +G IS L K D + D I V
Sbjct: 284 S--------------ARKIYWALVAGVPKPKQGRISTYLAK---DESEDDSIMRVAAHGD 326
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
A HAVT Y V++ S W+ L P+TGR HQLR H A + G I+GD KY
Sbjct: 327 DGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQLRAHMAHI-GHAIIGDPKY--FNIEN 383
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
WK L GL Q RLHL + + +P+ +
Sbjct: 384 WK--------------------LPGGL----------QNRLHLLARRIVIPHPRGGV--- 410
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
DVS APLP HM +SW++L
Sbjct: 411 -----IDVS--------APLPPHMLQSWNLLG 429
>gi|288958958|ref|YP_003449299.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288911266|dbj|BAI72755.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 354
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 122/270 (45%), Gaps = 69/270 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D + L +D +E P+LVHRLD+D+SG+L++ RT +A+ L +FR
Sbjct: 136 LAVQGGTGTSKHLDAML-DALRFDGNERPKLVHRLDKDTSGVLLLARTTFAASKLTELFR 194
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+++ YWA+ VG P +G I L K +G+ V N
Sbjct: 195 GSA--------------VRKIYWAVTVGVPTPYQGKIDLALAKEGGPHGER----VAENK 236
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + AVT Y V + ++ + PLTGR HQLRVH A V GTPI+GD KY Q
Sbjct: 237 E--EGKRAVTVYSVQENVGKQAAFVAMWPLTGRTHQLRVHMAAV-GTPILGDGKYAGQ-- 291
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
G L + +K LHLH + + LP+
Sbjct: 292 ---------------------------GAFLAGAEVAKK---LHLHARRLILPHPRGG-- 319
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSW 270
+T+ + APLP HMQ +W
Sbjct: 320 -------------KTIDVTAPLPDHMQATW 336
>gi|407771062|ref|ZP_11118425.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285951|gb|EKF11444.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 365
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG +D + L D E P+LVHRLD+D+SG+L++ R+ ++A L F+
Sbjct: 129 LAVQGGTNTDLHVDGML-DALKLDSKERPKLVHRLDKDTSGVLLLARSASAANALTKAFK 187
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+KT ++ YWA+V G P +G+I APL K GK V++
Sbjct: 188 DKT--------------TRKLYWAIVTGAPDEREGLIDAPLAK---HGGKGGEKMVIDEK 230
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ SAQ T Y+ + + WL LSPLTGR HQLR HC + + PI+GD KYG
Sbjct: 231 EGKSAQ---TIYRQLARAGRRAAWLALSPLTGRTHQLRAHC-QAIECPILGDGKYG 282
>gi|374292582|ref|YP_005039617.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
gi|357424521|emb|CBS87400.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
Length = 354
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 122/270 (45%), Gaps = 69/270 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D + L +D +E P+LVHRLD+D+SG+L++ RT +A+ L +FR
Sbjct: 136 LAVQGGTGTSKHLDAML-DALRFDGNERPKLVHRLDKDTSGVLLLARTTFAASKLTELFR 194
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+++ YWA+ VG P +G I L K +G+ V N
Sbjct: 195 GSA--------------VRKIYWAVTVGVPTPYQGKIDLALAKEGGPHGER----VAENK 236
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + AVT Y V + ++ + PLTGR HQLRVH A V GTPI+GD KY Q
Sbjct: 237 E--EGKRAVTVYSVQENVGKQAAFVAMWPLTGRTHQLRVHMAAV-GTPILGDGKYAGQ-- 291
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
G L + +K LHLH + + LP+
Sbjct: 292 ---------------------------GAFLAGAEVTKK---LHLHARRLILPHPRGG-- 319
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSW 270
+T+ + APLP HMQ +W
Sbjct: 320 -------------KTIDVTAPLPDHMQATW 336
>gi|84685385|ref|ZP_01013283.1| ribosomal large subunit pseudouridine synthase C [Maritimibacter
alkaliphilus HTCC2654]
gi|84666542|gb|EAQ13014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2654]
Length = 350
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 130/279 (46%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG R +D LA LT+ Y + PRLVHRLD+D+SG+L++ RT+ A L FR
Sbjct: 109 LPTQGGSKQTRHVDGLA-EVLTFGYDDKPRLVHRLDKDTSGVLLLARTRQVAKDLTDAFR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVN 118
+ N ++I YWA+V G P KG + L K G+ +++ ++
Sbjct: 168 HR----------NTRKI----YWAVVAGVPLPRKGTVKWGLVKAPGHGGQGEGEKMLCIH 213
Query: 119 NDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
++ A+ A T Y VI+ W+ L+P+TGR HQLR H AE +G PIVGD KY
Sbjct: 214 PSEVAKVEGAKRAETDYVVIENLAQRAAWVGLTPITGRTHQLRAHMAE-MGHPIVGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G G + K +LHLH + + +
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAMLGGEISK--KLHLHARSI---EI 305
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ K + + + A LP HM R+W+ L
Sbjct: 306 EHPVTK------------KPIFIEAALPEHMARTWEQLG 332
>gi|296284584|ref|ZP_06862582.1| pseudouridylate synthase [Citromicrobium bathyomarinum JL354]
Length = 388
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L + D P RLVHRLD+D+SG+L++ RT SA F
Sbjct: 118 LATQGGSKTFSHVDGLLDAFVEGDGPRP-RLVHRLDKDTSGVLLIARTPGSAAAFSKRF- 175
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALVVG P G I APL K G+ +
Sbjct: 176 -------------AGRSAKKVYWALVVGVPEQHVGEIDAPLAKQPGTGGEKMHVDTEGG- 221
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
Q A TRY+V++ + + WL+L PLTGR HQLRVHCA +G PIVGD KYG Q
Sbjct: 222 -----QPAKTRYRVVERAGNRAAWLELEPLTGRTHQLRVHCA-AMGHPIVGDGKYGGQ 273
>gi|260428027|ref|ZP_05782006.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
gi|260422519|gb|EEX15770.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
Length = 351
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 127/279 (45%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG R +D L+ L + E PRLVHRLD+D+SG+L++ RT+ A L + R
Sbjct: 113 LPVQGGSKTTRHVDGLS-EALRFGLDEKPRLVHRLDKDTSGVLLLARTRAVAQALTAAIR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVV- 117
K ++ YWA+V G P G I L K +G+ +++ V
Sbjct: 172 HKQ--------------TRKIYWAVVAGVPTPYLGEIRYALVKAPGHGSSGEGEKMICVH 217
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D+ A+ A T Y + +W+ L P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 218 PRDVDRTEGAKRAHTLYATLYRVAGRASWVALEPITGRTHQLRAHMAEI-GHPIIGDGKY 276
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G ++ K +LHLH + MT +
Sbjct: 277 G-----------------GSGQE-----NLGDGWGAQLGGVISK--KLHLHARSMTFEHP 312
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + APLP HM+ +W+ L
Sbjct: 313 VTH---------------KRVTVTAPLPEHMKHTWETLG 336
>gi|334141387|ref|YP_004534593.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
gi|333939417|emb|CCA92775.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
Length = 420
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 99/179 (55%), Gaps = 25/179 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEP-PRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ QGG G+++ +D L Y P PRLVHRLD+D+SG+L++ RT SA F
Sbjct: 117 LATQGGSGMKQHVDGL---LDAYAPDGPRPRLVHRLDKDTSGVLLIARTPGSAA-----F 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
K FS R ++ YWALVVG P S G+I PL K G+ ++
Sbjct: 169 FSKRFSG---------RSARKIYWALVVGVPSISDGMIELPLAKQPGTGGEK-----MHV 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
D+ Q A TRY+V+ + + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 215 DE-EGGQPARTRYRVLDRAGNRAAWVELHPLTGRTHQLRVHMA-AIGHPIVGDGKYGGQ 271
>gi|221638143|ref|YP_002524405.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
gi|221158924|gb|ACL99903.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
Length = 343
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 130/280 (46%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+LV+ RT A L F
Sbjct: 105 LPSQGGSGQGERHVDGLT-EALKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESF 163
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R + N ++I YWALV G P +G I L K G+ +++ +
Sbjct: 164 RHR----------NTRKI----YWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCI 209
Query: 118 NNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ ++ A+ A T + + W+ LSP+TGR HQLR H AE LG PIVGD K
Sbjct: 210 HPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGK 268
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E L G + G + + +LHLH + +T
Sbjct: 269 YG-----------------GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT--- 301
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ I+K + + APLP HM ++W +L+
Sbjct: 302 IEHPIKK------------DLVTFTAPLPGHMAKTWKLLD 329
>gi|429207722|ref|ZP_19198978.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
gi|428189115|gb|EKX57671.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
Length = 349
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 130/280 (46%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+LV+ RT A L F
Sbjct: 111 LPSQGGSGQGERHVDGLT-EALKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESF 169
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R + N ++I YWALV G P +G I L K G+ +++ +
Sbjct: 170 RHR----------NTRKI----YWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCI 215
Query: 118 NNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ ++ A+ A T + + W+ LSP+TGR HQLR H AE LG PIVGD K
Sbjct: 216 HPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGK 274
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E L G + G + + +LHLH + +T
Sbjct: 275 YG-----------------GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT--- 307
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ I+K + + APLP HM ++W +L+
Sbjct: 308 IEHPIKK------------DLVTFTAPLPGHMAKTWKLLD 335
>gi|77462289|ref|YP_351793.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332560170|ref|ZP_08414492.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
gi|77386707|gb|ABA77892.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332277882|gb|EGJ23197.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
Length = 346
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 130/280 (46%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+LV+ RT A L F
Sbjct: 108 LPSQGGSGQGERHVDGLT-EALKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESF 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R + N ++I YWALV G P +G I L K G+ +++ +
Sbjct: 167 RHR----------NTRKI----YWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCI 212
Query: 118 NNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ ++ A+ A T + + W+ LSP+TGR HQLR H AE LG PIVGD K
Sbjct: 213 HPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGK 271
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E L G + G + + +LHLH + +T
Sbjct: 272 YG-----------------GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT--- 304
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ I+K + + APLP HM ++W +L+
Sbjct: 305 IEHPIKK------------DLVTFTAPLPGHMAKTWKLLD 332
>gi|126461165|ref|YP_001042279.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17029]
gi|126102829|gb|ABN75507.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17029]
Length = 346
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 130/280 (46%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+LV+ RT A L F
Sbjct: 108 LPSQGGSGQGERHVDGLT-EALKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESF 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R + N ++I YWALV G P +G I L K G+ +++ +
Sbjct: 167 RHR----------NTRKI----YWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCI 212
Query: 118 NNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ ++ A+ A T + + W+ LSP+TGR HQLR H AE LG PIVGD K
Sbjct: 213 HPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGK 271
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E L G + G + + +LHLH + +T
Sbjct: 272 YG-----------------GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT--- 304
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ I+K + + APLP HM ++W +L+
Sbjct: 305 IEHPIKK------------DLVTFTAPLPGHMAKTWKLLD 332
>gi|146278539|ref|YP_001168698.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17025]
gi|145556780|gb|ABP71393.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17025]
Length = 346
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 131/280 (46%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+LV+ RT A L F
Sbjct: 108 LPSQGGSGQGERHVDGLT-EALKFGYKERPKLVHRLDKDTSGVLVLARTDRVARALSESF 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R + N ++I YWALV G P +G I L K G+ +++ +
Sbjct: 167 RHR----------NTRKI----YWALVAGVPSPKQGSIKYALMKAAGHGRGGEGEKMLCI 212
Query: 118 NNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ ++ A+ A T + + W+ LSP+TGR HQLR H AE LG PIVGD K
Sbjct: 213 HPAKVGDYPEAKRAQTDFFTLWFLGTRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGK 271
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S++E + G + G + + +LHLH + +T
Sbjct: 272 YG-----------------GSSQENAGD-----GWGAQIGGEVSR--KLHLHARSLT--- 304
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ I+K E + APLP HM ++W +L+
Sbjct: 305 IEHPIRK------------ELVTFTAPLPPHMAKTWKLLD 332
>gi|290979858|ref|XP_002672650.1| predicted protein [Naegleria gruberi]
gi|284086228|gb|EFC39906.1| predicted protein [Naegleria gruberi]
Length = 624
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 97/179 (54%), Gaps = 23/179 (12%)
Query: 3 VQGGIGIRRSIDELAATCLTYD-YSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
VQGG ID L D ++ P+LVHRLDRD++G+L++ R + A + +E
Sbjct: 430 VQGGSNQTFHIDALLDALTGLDGFNVRPKLVHRLDRDTTGVLIVARNRAGAIRMQQWLQE 489
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS----DRITVV 117
T L++ YWA+ VG P + G I K+V+D K +++ V
Sbjct: 490 STVP------------LKKCYWAVTVGVPTPTTGRI-----KMVIDIQKDANGVEKVVPV 532
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+N + S++ +V+ Y+ I W+ L P+TGRKHQLRVHCA LG PI+GDYKYG
Sbjct: 533 DN-KTDSSKISVSEYKTIDHMTDKLAWVALYPVTGRKHQLRVHCASALGAPILGDYKYG 590
>gi|414162181|ref|ZP_11418428.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410879961|gb|EKS27801.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 413
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 122/278 (43%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R +D + + + PRLVHRLDR++SG L++ +T+ +A+ L FR
Sbjct: 192 LAVQGGSGLTRHVDGML-EVMRDAKGQRPRLVHRLDRETSGCLLIAKTRFAASTLTGSFR 250
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I V
Sbjct: 251 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRVAAH 293
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ S W+ L P+TGR HQLR H A + IVGD KY
Sbjct: 294 GDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKYFNKEN 352
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ L GL Q RLHL + + +P+
Sbjct: 353 WQ--------------------------LPGGL----------QNRLHLLARRIVIPHPR 376
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + APLP HM +SW++L
Sbjct: 377 GGV----------------IDVTAPLPPHMLQSWNLLG 398
>gi|92117127|ref|YP_576856.1| pseudouridine synthase RluD [Nitrobacter hamburgensis X14]
gi|91800021|gb|ABE62396.1| ribosomal large subunit pseudouridine synthase C [Nitrobacter
hamburgensis X14]
Length = 411
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 126/274 (45%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ R ID + + + PRLVHRLDR+++G L++ +T+ +AT L FR
Sbjct: 190 LAVQGGSGLSRHIDGML-EVMCDAKGQRPRLVHRLDRETAGCLLVAKTRFAATALTGSFR 248
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 249 HRS--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRIAAH 291
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A HAVT Y V++ S W+ L P+TGR HQLR H A + IVGD KY
Sbjct: 292 GDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKY----- 345
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+K+ N ++P GL Q RLHL + + +P+ +
Sbjct: 346 ----------FNKE-NWQLPG------GL----------QKRLHLLARRIVIPHPRGGV- 377
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM +SW++L
Sbjct: 378 ---------------IDVTAPLPPHMLQSWNLLG 396
>gi|85373096|ref|YP_457158.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
gi|84786179|gb|ABC62361.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
Length = 399
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 92/178 (51%), Gaps = 21/178 (11%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG + +D L + + PRLVHRLD+D+SG+L++ RT SA F
Sbjct: 115 LATQGGTKTTKHVDGLLDAFVDGEDDPRPRLVHRLDKDTSGVLLIARTPGSAAAYSKRF- 173
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALVVG P +G I APL K G+ + N
Sbjct: 174 -------------AGRSAKKVYWALVVGVPDLHEGEIDAPLAKQPGTGGEKMHVDEENG- 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
Q A TRY+V++ + + W++L P+TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 220 -----QPAKTRYRVVERAGNRACWVELEPMTGRTHQLRVHMA-AMGHPIVGDGKYGGQ 271
>gi|407776138|ref|ZP_11123427.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407280854|gb|EKF06421.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 367
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG +D + L D E P+LVHRLD+D+SG+L++ R+ ++A L F+
Sbjct: 131 LAVQGGTNTNVHVDGML-DALKLDSKERPKLVHRLDKDTSGVLLLARSASAAHALTKAFK 189
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+K+ ++ YWA+V G P +G+I APL K+ GK V++
Sbjct: 190 DKS--------------TRKLYWAIVTGAPAEREGMIDAPLAKIA---GKGGEKMVIDEK 232
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
SAQ + ++ + + WL LSPLTGR HQLRVHC E + PI+GD KYG
Sbjct: 233 LGKSAQ---SVFRQLHRAGRKAAWLALSPLTGRTHQLRVHC-EAIECPILGDGKYG 284
>gi|86749455|ref|YP_485951.1| pseudouridine synthase RluD [Rhodopseudomonas palustris HaA2]
gi|86572483|gb|ABD07040.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris HaA2]
Length = 453
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 122/276 (44%), Gaps = 75/276 (27%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG G + ID L + + PRLVHR+D++++G L++ +T+ +AT L FR +
Sbjct: 234 VQGGSGTTKHID-LMLEVMRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRHR 292
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+ ++ YWALV G P+ +G IS L K + + D I +
Sbjct: 293 S--------------ARKIYWALVAGVPKPKQGRISTYLAK---EESEDDSIMRIAEHGD 335
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQ 178
A HAVT Y V++ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 336 EGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ 394
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
L GL Q RLHL + + +P+
Sbjct: 395 --------------------------LPGGL----------QKRLHLLARRIVIPH---- 414
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ T+ + APLP HM +SW++L
Sbjct: 415 ------------PRGGTIDVSAPLPPHMLQSWNLLG 438
>gi|402772320|ref|YP_006591857.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401774340|emb|CCJ07206.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 356
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 63/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G R +D + + D P LVHRLDRD+SG+L++ + + A L IFR
Sbjct: 119 LATQGGSGQTRHVDGMLESLAKGDTR--PVLVHRLDRDTSGVLLVAKNRRMAAELGEIFR 176
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK---VVVDNGKS---DRI 114
R ++ YWALV G P+ ++G IS L K + G + +++
Sbjct: 177 S--------------RQAKKIYWALVEGVPKPAQGRISLYLAKGAGMEKSRGGARELEKM 222
Query: 115 TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
V + + AQH++T Y ++ WL + PLTGR HQLR H AE +G PI GD K
Sbjct: 223 RVAKHGEA-DAQHSLTYYAIVDKVAPRCAWLSMKPLTGRTHQLRAH-AEAIGHPIFGDPK 280
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG HR + +D +P+ GLD +LHL + + LP+
Sbjct: 281 YG---HRPEDEVR----RRDPLRAMPE------GLDR----------KLHLLARRLVLPH 317
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + APLP HM++SW++
Sbjct: 318 PKGGV----------------IDVTAPLPDHMKKSWELFG 341
>gi|339504824|ref|YP_004692244.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
gi|338758817|gb|AEI95281.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
Length = 346
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 126/281 (44%), Gaps = 64/281 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG G R +D L+ L + + + PRLVHRLD+D+SG+L++ RT+ +A L + R
Sbjct: 109 LPTQGGSGQTRHVDGLS-EALKFGFEDKPRLVHRLDKDTSGVLLLARTRMAAKALTTAMR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVV- 117
K ++ YWALV G P G I L K G+ +++ +
Sbjct: 168 HKE--------------TRKIYWALVAGVPTPYLGEIRYALVKAPGHGRRGEGEKMIALP 213
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D+ A+ A T Y + +W+ + P+TGR HQLRVH AE+ G PIVGD KY
Sbjct: 214 PREVDETPGAKRAHTLYATLYRVGSRASWVAMEPITGRTHQLRVHMAEI-GHPIVGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--P 233
G S +E + G + G ++ K +LHLH + M P
Sbjct: 273 G-----------------GSGQE-----NMGDGWGAQLGGVISK--KLHLHARMMRFEHP 308
Query: 234 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + A +P HM++SWD
Sbjct: 309 ETRKPVT-----------------ITADMPDHMKQSWDTFG 332
>gi|406923072|gb|EKD60332.1| hypothetical protein ACD_54C00808G0002 [uncultured bacterium]
Length = 346
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 124/278 (44%), Gaps = 59/278 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+L++ RT A L
Sbjct: 109 LPSQGGSGQGDRHVDGLC-EALKFGYKEKPKLVHRLDKDTSGLLMLARTDRVARALSEAL 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R R+ ++ YWA V G P KG I L K G +++ V+
Sbjct: 168 RH--------------RLTRKIYWAAVAGVPHPRKGSIKYGLMKAGGGRGGDEKMICVHP 213
Query: 120 DQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ A+ A T Y V+ + +W+ L P+TGR HQLR H AE +G PI+GD KYG
Sbjct: 214 AKMADFPEAKRAQTDYFVLWFLGNRLSWMALEPVTGRTHQLRAHMAE-MGHPIIGDGKYG 272
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
T E + G DL +LHLH + + V
Sbjct: 273 GGT----------------TENMGDGWGAGMGGDLSR--------KLHLHARML---KVQ 305
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I K E + +APLP HMQR+W L+
Sbjct: 306 HPITK------------EMMTWIAPLPEHMQRTWKTLD 331
>gi|126737039|ref|ZP_01752774.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
gi|126721624|gb|EBA18327.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
Length = 348
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 126/280 (45%), Gaps = 62/280 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D L+ L + E PRLVHRLD+D+SG+LV+ R + +A L + FR
Sbjct: 110 LAVQGGSGTTRHVDGLS-EALRLEAEEKPRLVHRLDKDTSGVLVLARNRKAAQALTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV- 117
K N ++I YWALV G P G I L K +G+ +++ V
Sbjct: 169 HK----------NTRKI----YWALVAGVPTPYLGEIKTGLVKAPGHGRSGEGEKMIPVH 214
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D A+ A T Y + +W+ + P+TGR HQLR H A +G PI GD KY
Sbjct: 215 PRDIDDTPGAKRAHTHYATLYRVASRASWVAMEPITGRTHQLRAHMA-AIGHPIAGDGKY 273
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN- 234
G ++ L G + G I+ K +LHLH + + +
Sbjct: 274 GGSG----------------------QENLGDGWGAQLGGIISK--KLHLHARRLVFEHP 309
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
VS + + + A LP HM+ SWD L
Sbjct: 310 VSH----------------KPISVEAELPEHMKESWDTLG 333
>gi|399067133|ref|ZP_10748776.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
gi|398027292|gb|EJL20848.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
Length = 453
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 123/275 (44%), Gaps = 74/275 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEP-PRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ QGG G + +D L Y P PRLVHRLD+D+SG+L++ RT SA F
Sbjct: 127 LATQGGSGQKEHVDGL---LDAYVEKGPRPRLVHRLDKDTSGVLLIARTPGSAA-----F 178
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
K FS R ++ YWALVVG P +G+I PL K G +++ V
Sbjct: 179 FSKRFSG---------RTARKIYWALVVGVPDIHEGLIELPLAKQPGTGG--EKMHVDEK 227
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 228 E----GQTARTRYRVIDRAGNRAAWVELHPLTGRTHQLRVHMA-AIGHPIVGDGKYGGQ- 281
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
E L +GSI K +HLH + +
Sbjct: 282 ----------------------EAFL-------TGSISRK---MHLHARRLI-------- 301
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
++ G L + APLP H S D L
Sbjct: 302 --IEHPDGV------PLDVTAPLPEHFANSLDSLG 328
>gi|315121808|ref|YP_004062297.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495210|gb|ADR51809.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 336
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 125/271 (46%), Gaps = 66/271 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ ID + + + PRL+HRLDR++SGILV+ RT+ +A L FR
Sbjct: 117 ISVQGGSGVTYHIDGFLKSW-SDSKGQKPRLIHRLDRETSGILVVARTRAAAQSLTESFR 175
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ YW+LV G P+ K IS L K G D + VV+ +
Sbjct: 176 --------------MRRIRKIYWSLVRGVPQNKKECISGWLFKKAKIGG--DYVQVVDQN 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A +A++ ++VI + + WL++ P TGR HQLRVH V G PIVGD KY
Sbjct: 220 E-KGAHYAISHFKVIDRFEYKFCWLEMQPYTGRTHQLRVHALHV-GHPIVGDKKYR---- 273
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DS E + S I Q +L+LH + + P+
Sbjct: 274 -----------INDSKE-------------IFSNHI---QNKLYLHARYIDFPHPEGG-- 304
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWD 271
L++ APLP HM ++WD
Sbjct: 305 --------------RLQITAPLPVHMAKTWD 321
>gi|341614661|ref|ZP_08701530.1| pseudouridylate synthase [Citromicrobium sp. JLT1363]
Length = 398
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 94/179 (52%), Gaps = 24/179 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEP-PRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ QGG +D L + D EP PRLVHRLD+D+SG+L++ RT SA
Sbjct: 126 LATQGGSKTYSHVDGLLDAFVEGD--EPRPRLVHRLDKDTSGVLLIARTPGSAAAF---- 179
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
K FS R ++ YWALVVG P G I APL K G+ +
Sbjct: 180 -SKRFSG---------RSAKKVYWALVVGVPEQHVGEIDAPLAKQPGTGGEKMHV----- 224
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ Q A TRY+V++ + + WL+L PLTGR HQLRVH A +G PI+GD KYG Q
Sbjct: 225 -DMEGGQPAKTRYRVVERAGNKAAWLELEPLTGRTHQLRVHLA-AIGHPILGDGKYGGQ 281
>gi|259416795|ref|ZP_05740715.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
gi|259348234|gb|EEW60011.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
Length = 348
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 129/283 (45%), Gaps = 68/283 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D L+ L +D + PRLVHRLD+D+SG+LV+ R + +A L + FR
Sbjct: 110 LAVQGGSGTTKHVDGLS-EALRFDAEDKPRLVHRLDKDTSGLLVLARNRKAAQGLTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRI 114
K N ++I YWALV G P G++ AP GK +G+ +++
Sbjct: 169 HK----------NTRKI----YWALVAGVPTPYLGEIKTGLVKAPGHGK----SGEGEKM 210
Query: 115 TVVNN---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 171
V+ D A+ A T Y + +W+ + P+TGR HQLR H A +G PI+G
Sbjct: 211 IPVDPRDVDATPGAKRAHTYYATLYRVASRASWVAMEPVTGRTHQLRAHMAG-MGHPIIG 269
Query: 172 DYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMT 231
D KYG S +E L G + G ++ K +LHLH + +
Sbjct: 270 DGKYG-----------------GSGQE-----NLGDGWGAQIGGLISK--KLHLHARRLQ 305
Query: 232 LPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + + A LP HM+ SWD
Sbjct: 306 FEHPVTG---------------KVVTVTAALPDHMKESWDTFG 333
>gi|393773266|ref|ZP_10361664.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. Rr 2-17]
gi|392721146|gb|EIZ78613.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. Rr 2-17]
Length = 442
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 93/177 (52%), Gaps = 25/177 (14%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEP-PRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
QGG G +D L Y S P PRLVHRLD+D+SG+L++ R+ SA F
Sbjct: 117 TQGGTGTHAHVDGL---LDAYAASGPRPRLVHRLDKDTSGVLLIARSAGSAA-----FFS 168
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
K FS R ++ YWALVVG P G+I P+ K G+ +
Sbjct: 169 KRFSG---------RTARKIYWALVVGVPGIHDGMIELPIAKQPGTGGEKMHV------D 213
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 214 KEAGQVARTRYRVIDRAGNSAAWVELHPLTGRTHQLRVHMA-AIGHPIVGDGKYGGQ 269
>gi|99080132|ref|YP_612286.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
gi|99036412|gb|ABF63024.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
Length = 348
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 129/283 (45%), Gaps = 68/283 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D L+ L +D + PRLVHRLD+D+SG+LV+ R + +A L + FR
Sbjct: 110 LAVQGGSGTTKHVDGLS-EALRFDAEDKPRLVHRLDKDTSGLLVLARNRKAAQGLTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRI 114
K N ++I YWALV G P G++ AP GK +G+ +++
Sbjct: 169 HK----------NTRKI----YWALVAGVPTPYLGEIKTGLVKAPGHGK----SGEGEKM 210
Query: 115 TVVNN---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 171
V+ D A+ A T Y + +W+ + P+TGR HQLR H A +G PI+G
Sbjct: 211 IPVDPRDVDATPGAKRAHTYYATLYRVASRASWVAMEPVTGRTHQLRAHMAG-MGHPIIG 269
Query: 172 DYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMT 231
D KYG S +E L G + G ++ K +LHLH + +
Sbjct: 270 DGKYG-----------------GSGQE-----NLGDGWGAQIGGLISK--KLHLHARRLQ 305
Query: 232 LPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + + A LP HM+ SWD
Sbjct: 306 FEHPVTG---------------KVVTVTAALPDHMKESWDTFG 333
>gi|254466117|ref|ZP_05079528.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
gi|206687025|gb|EDZ47507.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
Length = 348
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 130/283 (45%), Gaps = 68/283 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G + +D LA L + E P+LVHR+D+D+SG+LV+ R + +A L + FR
Sbjct: 110 LAVQGGSGTTKHVDGLA-EALKFGLEEKPKLVHRIDKDTSGVLVLARNRKAAQGLTAAFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRI 114
K N ++I YWALV G P G++ AP GK +G+ +++
Sbjct: 169 HK----------NTRKI----YWALVAGVPTPYLGEIKNGLVKAPGHGK----SGEGEKM 210
Query: 115 TVV---NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 171
V + D A+ A T Y + W+ + P+TGR HQLR H + +G PI G
Sbjct: 211 INVHPRDIDDTPGAKRAHTLYATLYRVASRAAWVAMEPITGRTHQLRAHMSG-MGHPIAG 269
Query: 172 DYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMT 231
D KYG ++ + G + G ++ K +LHLH + M
Sbjct: 270 DGKYGGSG----------------------QENMGDGWGAQIGGVISK--KLHLHARRMV 305
Query: 232 LPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ V++ + + +VAPLP HM+ SW+
Sbjct: 306 FEH--------------PVTR-KPVSVVAPLPEHMKESWETFG 333
>gi|357976563|ref|ZP_09140534.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
KC8]
Length = 368
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 110/234 (47%), Gaps = 39/234 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG R +D L LT+D P+LVHRLD+D+SG+L++ R+ +A
Sbjct: 118 LATQGGTKTERHVDGLL-DALTFDAEGRPKLVHRLDKDTSGVLLLARSANAAGHF----- 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWAL+ G P G+I P+ K G+ ++ D
Sbjct: 172 AKAFSS---------RTARKVYWALITGVPSIEDGMIELPIAKQPGTGGEK-----MHVD 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A TRY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 218 E-KEGSPARTRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGQEA 275
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGSIL 217
R+ + HP D ++P E G DL G L
Sbjct: 276 YLTGGVSRKMHLHARRLRVDHPDGGQIDVRADLPTHFSESLELLGFDLADGDAL 329
>gi|84499811|ref|ZP_00998099.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
gi|84392955|gb|EAQ05166.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
Length = 347
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 121/279 (43%), Gaps = 60/279 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG R +D L+ L +E PRLVHRLD+D+SG+L++ RT+ +A L + R
Sbjct: 109 LPTQGGSKQSRHVDGLS-QALVPAGAEKPRLVHRLDKDTSGVLLLARTRVAAQGLTAALR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTP-----RCSKGVISAPLGKVVVDNGKSDRIT 115
K ++ YWALV G P G++ AP + K +
Sbjct: 168 HKQ--------------TRKIYWALVAGVPTPYLGEIRYGLVKAPGHGKGGEGEKMIAVH 213
Query: 116 VVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ A+ A T Y + +W+ L PLTGR HQLR H AE+ G PI+GD KY
Sbjct: 214 PAEVEGTPGAKRAHTLYATLYRVASRASWVALEPLTGRTHQLRAHLAEI-GHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
G S +E L G + G I+ + +LHLH + MT +
Sbjct: 273 G-----------------GSGQE-----NLGDGWGAQLGGIISR--KLHLHARSMTFEHP 308
Query: 236 SQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + APLP HM SWD L
Sbjct: 309 VTG---------------KPVTVTAPLPDHMAESWDTLG 332
>gi|294675889|ref|YP_003576504.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
capsulatus SB 1003]
gi|294474709|gb|ADE84097.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
capsulatus SB 1003]
Length = 355
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 126/280 (45%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y + P++VHRLD+D+SG+L++ RT A L F
Sbjct: 116 LPSQGGSGQGDRHVDGLL-EALKFGYKDRPKMVHRLDKDTSGVLLIARTDRVARALSESF 174
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R KT ++ YWA V G P KG I L K G+ +++ +
Sbjct: 175 RLKT--------------TRKIYWAAVAGVPSPKKGTIRYGLVKAPGHGRGGEGEKMLCI 220
Query: 118 NN---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ D A+ A T + VI +W+ L P+TGR HQLR H AE LG PIVGD K
Sbjct: 221 HPSKVDATPDAKRATTDFAVIDGLGSRVSWVGLVPITGRTHQLRAHMAE-LGHPIVGDGK 279
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E L G + G + + +LHLH + ++
Sbjct: 280 YG-----------------GSGQE-----NLGDGWGSQLGGEISR--KLHLHARTISF-- 313
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I K +++ L APLP HM R+W L
Sbjct: 314 -DHPITKKRIT------------LTAPLPDHMVRTWKTLG 340
>gi|209963759|ref|YP_002296674.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957225|gb|ACI97861.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
Length = 336
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 123/274 (44%), Gaps = 69/274 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG + +D + L ++ P+LVHRLD+D+SG LV+ R+ +A L + FR
Sbjct: 117 LATQGGTNQVKHLDAML-DALKFEAEGRPKLVHRLDKDTSGCLVLARSAAAAAKLTAAFR 175
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWA+ VG P+ KG I P+ K G +R+TV ++
Sbjct: 176 S--------------REARKIYWAVTVGVPKPMKGRIDLPVAKEAGTRG--ERMTVDEDE 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ HA+T Y V++ + ++ L P TGR HQLRVH A LGTPI+GD KY Q
Sbjct: 220 GV----HAITYYTVLEHAHKQAAFVALWPRTGRTHQLRVHMA-ALGTPILGDGKYAGQ-- 272
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
G LE L +Q LHLH + + LP+ +
Sbjct: 273 ---------------------------GAFLEGAGDLPRQ--LHLHARRIILPHPRGGV- 302
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + APLP HM+ +WD
Sbjct: 303 ---------------IDVTAPLPKHMRPAWDYFG 321
>gi|389878460|ref|YP_006372025.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
gi|388529244|gb|AFK54441.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
Length = 326
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 124/274 (45%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D + + E PRLVHRLDRD+SG+L + R +A FR
Sbjct: 114 LAVQGGSGTDRHLDGMLDALKRHPDDERPRLVHRLDRDTSGVLALARNARAAAWATRAFR 173
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E+T + + YWA+ +G PR ++GVI PL K V+ G + V D
Sbjct: 174 ERTTT--------------KIYWAVTLGVPRPARGVIDLPLAKRQVERGGERMVAVDEGD 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q AVT Y+V+ + + L PLTGR HQ+R H A + GTPIVGD KYG Q
Sbjct: 220 ----GQTAVTEYEVLA-AGGPCALVALKPLTGRTHQIRAHLAAI-GTPIVGDLKYGGQA- 272
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
DL + +P+ RLHLH + +TL
Sbjct: 273 --------VDL---RGQGLPR--------------------RLHLHARRLTL-------- 293
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
G D + + + A +P HM +S+D L
Sbjct: 294 -----DGPDGRR---ISVRAAIPPHMAQSFDRLG 319
>gi|406989143|gb|EKE08954.1| Pseudouridine synthase [uncultured bacterium]
Length = 325
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG +S+D L + Y PRLVHRLD+D+SG+ ++ +T A L F+
Sbjct: 118 LAVQGGTKQGKSLDTL---LIRYFEDAKPRLVHRLDKDTSGVFIIAKTLPMARWLTLAFK 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R +Q+ YWALV G P+ +G I+ L K +G+ R VN +
Sbjct: 175 E--------------RKVQKTYWALVCGVPKKKEGSITLALSKKASVHGEKVR---VNTE 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
S A T Y++++ L+L+P TGR HQLRVHCAE L TPI+GD KYG
Sbjct: 218 ---SGARATTYYRILETLGTKMALLELTPKTGRMHQLRVHCAEGLKTPILGDGKYG 270
>gi|255263430|ref|ZP_05342772.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
gi|255105765|gb|EET48439.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
Length = 347
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 60/276 (21%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG R +D LA L +DY E PRLVHRLDRD+SG+ +M RT+ A + F+E
Sbjct: 112 QGGSKQVRHLDGLA-EALKFDYFEKPRLVHRLDRDTSGVFIMARTREIAKAMSDAFKE-- 168
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVNNDQ 121
R ++ YWA V G P + G + L K G+++++ ++ +
Sbjct: 169 ------------RETRKIYWAAVGGVPHPAMGTVRWGLIKSGGHGRGGENEKMRCIHPRE 216
Query: 122 IM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ A+ A T Y ++ W+ L P+TGR HQLR H AE +G PI+GD KYG
Sbjct: 217 VEHTPGAKRATTDYALLDRLGSRAAWIALVPVTGRTHQLRAHMAE-MGHPIIGDGKYG-- 273
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
S +E + G +G E +LHLH + ++ + +
Sbjct: 274 ---------------GSGQE-------NLGDGWGAGMGEEIGRKLHLHARSLSFTHPATG 311
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + L A LP HM+ +WD +
Sbjct: 312 ---------------KRVNLTASLPEHMKHTWDFVG 332
>gi|392382334|ref|YP_005031531.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877299|emb|CCC98114.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 229
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 93/172 (54%), Gaps = 26/172 (15%)
Query: 5 GGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 64
GG + R D L + + +PP L HRLDRD+SG L++GR + L +F++
Sbjct: 34 GGPNLERHFD-----ALRFGFPKPPGLAHRLDRDTSGCLILGRHPKALRKLGKLFQDGK- 87
Query: 65 SASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS 124
+ + YWA+V GTP +G I PL KV +G RI V ++
Sbjct: 88 -------------VDKTYWAVVAGTPPEEQGRIELPLKKVTNKSGGW-RIVVADD----- 128
Query: 125 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q A+T Y+V+ +G TWL+L P TGR HQ+RVHCA LG P++GD +YG
Sbjct: 129 GQSAITDYRVLG-RGNGTTWLELKPHTGRTHQIRVHCATALGCPLLGDPQYG 179
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040285|gb|ACT57081.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 124/273 (45%), Gaps = 67/273 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI ID + + + PRL HRLD+++SGILV+ RT+ +A L FR
Sbjct: 117 ISVQGGSGIAYHIDGFLKSWVD-SKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFR 175
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +Q+ YW+LV G P+ K I+ L K G D + VV +
Sbjct: 176 --------------MRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGG--DYVHVVKQN 219
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A +A++ ++VI + WL++ P TGR HQLRVH +G PIVGD+KY
Sbjct: 220 E-KGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALH-MGCPIVGDHKYC---- 273
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
++ + I Q +L+LH + M LP+
Sbjct: 274 --------ANFKGNFTSPI--------------------QNKLYLHARYMDLPHPEGG-- 303
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L++ APLP+HM ++WD L
Sbjct: 304 --------------RLQITAPLPAHMVKTWDSL 322
>gi|154248685|ref|YP_001419643.1| RluA family pseudouridine synthase [Xanthobacter autotrophicus Py2]
gi|154162770|gb|ABS69986.1| pseudouridine synthase, RluA family [Xanthobacter autotrophicus
Py2]
Length = 364
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 129/275 (46%), Gaps = 70/275 (25%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D + D + PRLVHR+D+D+SG L++ +T+ +A+VL FR
Sbjct: 144 LAVQGGSGTYRHMDGILEVLRDKD-GQKPRLVHRIDKDTSGCLLVAKTRFAASVLAKSFR 202
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWA+V G P+ +G IS L + ++ + R+ D
Sbjct: 203 S--------------REARKVYWAVVPGVPKPKQGRISTYLARD--EDEEKMRVARHGED 246
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HA+T Y V+ + +WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 247 E---ASHAITYYAVVDQAAQKMSWLSLKPVTGRTHQLRAHLAHI-GHPIVGDPKY----- 297
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV-SQAI 239
D+ N E+P GL Q RLHL + + +P+ Q +
Sbjct: 298 --------FDI---ENWELPG------GL----------QNRLHLLARRLVIPHPRGQGL 330
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
DVS APLP HM +S+ VL
Sbjct: 331 --------IDVS--------APLPHHMAQSFAVLG 349
>gi|310816979|ref|YP_003964943.1| RluA family pseudouridine synthase [Ketogulonicigenium vulgare Y25]
gi|385234565|ref|YP_005795907.1| Pseudouridine synthase, RluA family protein [Ketogulonicigenium
vulgare WSH-001]
gi|308755714|gb|ADO43643.1| RluA family pseudouridine synthase [Ketogulonicigenium vulgare Y25]
gi|343463476|gb|AEM41911.1| Pseudouridine synthase, RluA family protein [Ketogulonicigenium
vulgare WSH-001]
Length = 347
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 126/278 (45%), Gaps = 61/278 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G+ R +D L L + Y + P+LVHRLD+D+SG+L++ RT A L
Sbjct: 111 LPSQGGSGLGDRHVDGLT-EALMFGYKDRPKLVHRLDKDTSGLLLLARTDRVARALSEAL 169
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R + N ++I YWA V G P G S G V + +++ V+
Sbjct: 170 RHR----------NVRKI----YWAAVAGIPTPWAG--SVKYGLVKMGRRGDEKMHCVHP 213
Query: 120 DQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + A+ A T Y V + W+ L P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 214 AAVATTEGAKRAHTDYAVQDQAGQRMAWMALVPITGRTHQLRAHMAEI-GHPIIGDGKYG 272
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
SN E + G +G Q +LHLH + + +
Sbjct: 273 -----------------GSNAE-------NAGDGWGAGIGGGVQNKLHLHARTLI---IE 305
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I K ETL L APLP+HMQ +WD L
Sbjct: 306 HPITK------------ETLTLQAPLPAHMQSTWDYLG 331
>gi|402849245|ref|ZP_10897485.1| Ribosomal large subunit pseudouridine synthase C [Rhodovulum sp.
PH10]
gi|402500558|gb|EJW12230.1| Ribosomal large subunit pseudouridine synthase C [Rhodovulum sp.
PH10]
Length = 637
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 123/278 (44%), Gaps = 75/278 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G ++ +D + L + PRLVHRLD+D+SG L++ +T+ +A+ L FR
Sbjct: 415 LAVQGGSGTKKHVDGML-EVLRDARGQKPRLVHRLDKDTSGCLLVAKTRFAASTLAKSFR 473
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWAL G P+ +G IS L K + RI +
Sbjct: 474 --------------ARETRKIYWALAAGVPKPKQGRISTFLAKEEREEESFMRIAKHGEE 519
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----G 176
A HAVT Y V++ + WL L P+TGR HQLR H A + G PIVGD KY
Sbjct: 520 ---GAIHAVTYYAVVETAAQRLAWLSLKPVTGRTHQLRAHLAHI-GHPIVGDPKYFSIEN 575
Query: 177 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 236
WQ +P G I Q RLHL + + +P+
Sbjct: 576 WQ--------------------LP-------------GGI---QNRLHLMARRLVIPH-- 597
Query: 237 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ T+ + APLP HM +S+++L
Sbjct: 598 --------------PRGGTIDVTAPLPPHMVQSFNLLG 621
>gi|383642663|ref|ZP_09955069.1| RluA family pseudouridine synthase [Sphingomonas elodea ATCC 31461]
Length = 367
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 39/235 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L ++ P+LVHRLD+D+SG L++ R+ +A +
Sbjct: 116 LATQGGTKTFEHVDGLL-DALQFEAEGRPKLVHRLDKDTSGALLIARSARAAA-----YF 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS R ++ YWALV+G P G I P+GK G+ ++
Sbjct: 170 AKSFSG---------RTARKIYWALVMGVPDIEDGFIELPIGKQPGTGGEKMQV------ 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A TRY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 215 DMEEGSPARTRYRVIEQAGNRCAWVELQPFTGRTHQLRVHMA-AIGHPIVGDGKYGLQEA 273
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPKE--KTLH-FGLDLESGSILE 218
R+ + HP D ++P +++H G DL G+ +E
Sbjct: 274 FLTGGISRKMHLHARRIRIDHPDGGRIDVRADLPHHFAESMHTLGFDLSVGNAIE 328
>gi|154253208|ref|YP_001414032.1| RluA family pseudouridine synthase [Parvibaculum lavamentivorans
DS-1]
gi|154157158|gb|ABS64375.1| pseudouridine synthase, RluA family [Parvibaculum lavamentivorans
DS-1]
Length = 330
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 118/274 (43%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG R +D + L +D E PRLVHRLDRD+SG+LV+ RT +A L F+
Sbjct: 110 LAVQGGTKTERHLDGML-DALIFDAKERPRLVHRLDRDTSGVLVLARTAKAAAALAQAFK 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+K Q+ YWALVVG P +G I L K +++R+
Sbjct: 169 QKD--------------AQKIYWALVVGVPVPRQGTIDLALSK--QGGPRAERVFAAKRG 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
A+ AVT + + + H W+ PLTGR HQ+R H A + TPIVGD KYG
Sbjct: 213 D-EGARDAVTHFSTVSTAAHTLAWVAFMPLTGRTHQIRAHAAAI-ETPIVGDGKYGGVN- 269
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
HP EIP+ +LHLH + + + +
Sbjct: 270 -----AHPGG-------EIPR--------------------KLHLHARSIDIAHPDGG-- 295
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A LP HM+ SW +L
Sbjct: 296 --------------RLHVEADLPPHMKTSWKLLG 315
>gi|407783138|ref|ZP_11130343.1| 23S rRNA pseudouridylate synthase [Oceanibaculum indicum P24]
gi|407203609|gb|EKE73595.1| 23S rRNA pseudouridylate synthase [Oceanibaculum indicum P24]
Length = 328
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 128/272 (47%), Gaps = 74/272 (27%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ ID L LT+D E PRLVHRLD+D+SG+L++ RT +A L + FR
Sbjct: 112 LAVQGGTGMTTHIDALL-DALTFDAKERPRLVHRLDKDTSGVLLLARTAAAARWLTAAFR 170
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K D EK YWA+ G P+ +G I P+ K+ GK ++ +
Sbjct: 171 AK---------DAEK-----LYWAITAGIPKPREGRIDLPIAKL---PGKRGEKMDIDEE 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + ++T + V++ ++ + P+TGR HQLRVH + +GTPI GD KYG Q
Sbjct: 214 E---GKRSITDFMVVEAVGKQAAFVAMRPVTGRTHQLRVHM-QAIGTPIQGDGKYGGQAA 269
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQA 238
L +G L + +LHLH +++TL PN
Sbjct: 270 ------------------------------LLAGDGLSR--KLHLHARQITLKRPNG--- 294
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSW 270
+TL + APLP HM +SW
Sbjct: 295 ---------------KTLTVTAPLPPHMAQSW 311
>gi|110678758|ref|YP_681765.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
gi|109454874|gb|ABG31079.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
Length = 346
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 122/281 (43%), Gaps = 64/281 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG G R +D LA L + + + PRLVHRLD+D+SG+L++ RT+ +A L + R
Sbjct: 109 LPTQGGSGQTRHVDGLA-EALKFGFEDKPRLVHRLDKDTSGVLLLARTRMAAKALTTAMR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV--- 117
K ++ YWALV G P G I L K + ++
Sbjct: 168 HKE--------------TRKIYWALVAGVPTPYLGEIRYALVKAQGRGRGGEGEKMIALP 213
Query: 118 --NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D+ A+ A T Y + +W+ + P+TGR HQLR H AE+ G PI+GD KY
Sbjct: 214 PREVDETPGAKRAHTLYATLYRVGSRASWVAMEPITGRTHQLRAHMAEI-GHPIIGDGKY 272
Query: 176 GWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--P 233
G S +E + G + G ++ K +LHLH + M P
Sbjct: 273 G-----------------GSGQE-----NMGDGWGAQLGGVISK--KLHLHARMMRFEHP 308
Query: 234 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ + + A +P HM++SW+
Sbjct: 309 ETRKPV-----------------TITADMPDHMKQSWETFG 332
>gi|163745572|ref|ZP_02152932.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
gi|161382390|gb|EDQ06799.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
Length = 348
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 125/282 (44%), Gaps = 65/282 (23%)
Query: 1 MPVQGGIG-IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ VQGG G R +D L+ L +D E PRLVHRLDRD+SG+L++ RT+ +A L +
Sbjct: 109 LAVQGGSGQADRHVDALS-EALIFDAEEKPRLVHRLDRDTSGVLLLARTRLAAKALTAAM 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R R ++ YWA+V G P G + L K +G+ +++ V
Sbjct: 168 RH--------------RETRKIYWAIVAGVPTPYLGEVKYGLVKAGGHGRSGEGEKMIAV 213
Query: 118 ---NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ D A+ A T Y + +W+ + P+TGR HQLR H AE+ G PIVGD K
Sbjct: 214 HPRDMDATPGAKRAHTLYATLFRVGSRASWVAMEPVTGRTHQLRAHMAEI-GHPIVGDGK 272
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL-- 232
YG S +E L G + G I+ K +LHLH + M
Sbjct: 273 YG-----------------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARMMRFEH 308
Query: 233 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
P+ + + + A LP HM SWD
Sbjct: 309 PHTRKPVT-----------------ITAELPEHMAHSWDTFG 333
>gi|338707762|ref|YP_004661963.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294566|gb|AEI37673.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 370
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 39/231 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D P+LVHRLD+D+SG+L++ R+ +A +
Sbjct: 113 LATQGGTKTHYHLDGLL-DALQFDAVSRPKLVHRLDKDTSGVLLLARSANAAG-----YF 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS R + YWALVVG P +G+I PL + G+ + N
Sbjct: 167 SKSFSG---------RTAHKVYWALVVGVPSIEEGLIDLPLARQPGSGGEKMHVDEEN-- 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
A T Y++++ + + WL+L PLTGR HQLR H + +G PIVGD KYG +
Sbjct: 216 ----GATAKTLYRIVERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGDGKYGGKEA 270
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESG 214
R+ HP+ S D + ++P+ E G DLE+G
Sbjct: 271 FLTGGISRKMHLHARRLVIPHPNGSSLDVHADLPEHFIESMGLLGFDLENG 321
>gi|85707668|ref|ZP_01038734.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
gi|85689202|gb|EAQ29205.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
Length = 395
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 93/181 (51%), Gaps = 25/181 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEP---PRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+ QGG + +D L D E PRLVHRLD+D+SG+L++ RT SA
Sbjct: 113 LATQGGSKTTKHVDGLL-DAFVDDQEEDAPRPRLVHRLDKDTSGVLLIARTPGSAATYSR 171
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
F R ++ YWALVVG P +G I APL K G+ +
Sbjct: 172 KF--------------SGRSARKVYWALVVGVPEVREGTIDAPLAKQPGTGGEK-----M 212
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
+ D+ Q A TRY+V++ + W++L PLTGR HQLRVH A +G PIVGD KYG
Sbjct: 213 HVDE-EGGQIAKTRYRVVERAGTRAAWVELEPLTGRTHQLRVHLA-AIGHPIVGDGKYGG 270
Query: 178 Q 178
Q
Sbjct: 271 Q 271
>gi|395520657|ref|XP_003764442.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Sarcophilus harrisii]
Length = 310
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 129/261 (49%), Gaps = 51/261 (19%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L + +EP L HRLD++++G++V+ R + A +
Sbjct: 61 LPVHGGPGVKSCITDILPILAKMLYGNKAEPLHLCHRLDKETTGVMVLAREKEMAHQVQE 120
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+F+ + + + YWA+ VG P S G+I PL K V + ++T+
Sbjct: 121 LFKTRQVA--------------KKYWAICVGVPMHSAGMIDIPLIEKEVQGQQQHHKMTL 166
Query: 117 -----VNNDQIMS------AQHAVTRYQVIKP--SCHGYTWLKLSPLTGRKHQLRVHCAE 163
+ N + M A AVT+YQV+ SC ++L+L P+TG KHQLRVH A
Sbjct: 167 APSYRMENGKTMKIRPNRHAHVAVTQYQVLSRTLSC---SFLELQPITGVKHQLRVHLAF 223
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 223
LG P++GD+KY W + P LS +++ EKT L L
Sbjct: 224 GLGCPVLGDHKYS-----DWNKLAPQKLSSGILKKLGLEKTKTRHLP------------L 266
Query: 224 HLHCKEMTLPNVSQAIQKVQL 244
HLH +++ LP + Q++ L
Sbjct: 267 HLHAQQLILPPLGSEKQELNL 287
>gi|332187840|ref|ZP_08389574.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
gi|332012190|gb|EGI54261.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
Length = 363
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 106/237 (44%), Gaps = 39/237 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L ++ P+LVHRLD+D+SG L++ R SA F
Sbjct: 113 LATQGGTKTTTHVDGLL-DALQFEAEGRPKLVHRLDKDTSGALLVARNARSAA-----FF 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS R ++ YWALVVG P G I P+ K G+ + N
Sbjct: 167 AKAFSG---------RTAKKIYWALVVGVPSIEDGTIELPIAKQPGTGGEKMHVDEENG- 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
Q A +RY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG
Sbjct: 217 -----QAARSRYRVIERAGNRCCWVELQPFTGRTHQLRVHMA-AIGHPIVGDGKYGGAAA 270
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSILEKQ 220
R+ + HP D E+P E G D G +L ++
Sbjct: 271 FLTGGISRKMHLHARRIRVDHPDGGRIDQTAELPSHFAESMNQLGFDEIRGDVLPQE 327
>gi|407800531|ref|ZP_11147391.1| hypothetical protein OCGS_2464 [Oceaniovalibus guishaninsula
JLT2003]
gi|407057450|gb|EKE43426.1| hypothetical protein OCGS_2464 [Oceaniovalibus guishaninsula
JLT2003]
Length = 350
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 122/272 (44%), Gaps = 60/272 (22%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG R +D LA L + + PRLVHRLDRD+SGIL++ RT+ +A L R
Sbjct: 113 QGGSKQTRHVDNLA-EALRFGLEDKPRLVHRLDRDTSGILLLARTRIAAKGLTETLRH-- 169
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV--VDNGKSDRITVVNNDQ 121
R ++ YWA + G P G + L K G+ +++ ++ D
Sbjct: 170 ------------RATRKIYWAALAGVPSPRMGSVKYGLVKAPGRGAGGEGEKMLCIHPDA 217
Query: 122 IMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + A+ A T Y V+ +W+ L P+TGR HQLR H AE LG P++GD KYG
Sbjct: 218 VTATDGAKRAHTDYAVLSALGGRMSWVALVPVTGRTHQLRAHMAE-LGHPVIGDGKYG-- 274
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
S +E + G + G L + +LHLH + + +
Sbjct: 275 ---------------GSGQENAGD-----GWGAQLGGELSR--KLHLHARSLAFRHP--- 309
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSW 270
+G D L L APLP HM R+W
Sbjct: 310 ------VTGAD------LTLTAPLPDHMARTW 329
>gi|158424148|ref|YP_001525440.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158331037|dbj|BAF88522.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 384
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 123/274 (44%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID + D + PRLVHR+D+D++G L++ + + SA L FR
Sbjct: 164 IAVQGGSGTFRHIDGMLDALRAKD-GQKPRLVHRIDKDTAGCLLIAKNRLSAAQLAKNFR 222
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R ++ YWALV G P+ +G IS L + + +R+ V +
Sbjct: 223 S--------------REARKIYWALVPGVPKPRQGRISTYLAREEAE----ERMRVARHG 264
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A HAVT Y V++ + +WL L P+TGR HQ+R H A + PIVGD KY
Sbjct: 265 E-EDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTHQIRAHLAHIH-HPIVGDPKY----- 317
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
N E+P GL Q RLHL + + +P+
Sbjct: 318 -----------FNIENWELPG------GL----------QNRLHLLARRLVIPH------ 344
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ DVS APLP HM +SW VL
Sbjct: 345 -PRGEGMIDVS--------APLPPHMAQSWAVLG 369
>gi|113931514|ref|NP_001039205.1| RNA pseudouridylate synthase domain-containing protein 4 [Xenopus
(Silurana) tropicalis]
gi|123892314|sp|Q28C59.1|RUSD4_XENTR RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|89268931|emb|CAJ83700.1| RNA pseudouridylate synthase domain containing 4 [Xenopus
(Silurana) tropicalis]
Length = 324
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 60/256 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDY---SEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG + RS+ L + + +EP +L HRLDRD++G L++ RT +A +
Sbjct: 67 LPVHGGPTVERSVASLLPALAKHHFGWKAEPLKLCHRLDRDTTGALILARTTEAAERVQQ 126
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKV------------- 104
RE R + R YWAL +GTP +G++ P+ +
Sbjct: 127 ALRE--------------REVHRVYWALCLGTPSPREGILDIPIMEKETSGPQKHYKMAL 172
Query: 105 -----VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRV 159
V + G +R+ V SA AVTRY+ + + G + ++L P+TG KHQLRV
Sbjct: 173 SPRFRVSEEGAVERVRVPR-----SAHEAVTRYRTLG-AASGASLVELHPITGVKHQLRV 226
Query: 160 HCAEVLGTPIVGDYKYG-WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILE 218
H A L PI+GD+KY W R Q P + + +P+ +TL
Sbjct: 227 HLALGLNCPILGDHKYSHWG--RLAPQKPPDSVLRALGLTVPQARTLS------------ 272
Query: 219 KQPRLHLHCKEMTLPN 234
LHLH ++TLP+
Sbjct: 273 ----LHLHAVQLTLPS 284
>gi|308813053|ref|XP_003083833.1| pseudouridine synthase family protein (ISS) [Ostreococcus tauri]
gi|116055715|emb|CAL57800.1| pseudouridine synthase family protein (ISS) [Ostreococcus tauri]
Length = 476
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 45/200 (22%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT---FSA----------SKEDNDN 73
E P +VHRLDRD+SG+LV+ RT +A L+++F+ K+ F+A + +D+
Sbjct: 195 EAPYVVHRLDRDTSGVLVLARTSFAANKLNAMFQRKSKTDFAAVLRAEMELGKAPRYDDS 254
Query: 74 EKRILQRWYWALVVGTP--RCSKGVISAPLGKVVVDNGKSDRITVV-------------- 117
E +QR YWA+ P +G I APL +G+ D + +V
Sbjct: 255 E---IQRTYWAICANPPPRGTLEGWIDAPLADTDEGDGRGDNVRLVGGWRVYDVQNGDVI 311
Query: 118 -----------NNDQIMSAQHAVTRYQVIKPSCH-GYTWLKLSPLTGRKHQLRVHCAEVL 165
N ++ +S++ A TR++V+ + G T L+L P+TGRKHQLRVH ++ L
Sbjct: 312 VGAGEQEFARVNKEENVSSRAATTRFKVLASAGDDGPTLLELVPITGRKHQLRVHLSKAL 371
Query: 166 GTPIVGDYKYGWQTHRK-WK 184
+PIVGDYKYG+ +K W+
Sbjct: 372 SSPIVGDYKYGFTDKQKPWR 391
>gi|56551335|ref|YP_162174.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260753046|ref|YP_003225939.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411894|ref|YP_005621259.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|56542909|gb|AAV89063.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552409|gb|ACV75355.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932268|gb|AEH62808.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 374
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 39/231 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L ++ P+LVHRLD+D+SG+L++ R+ +A +
Sbjct: 113 LATQGGTKTHYHLDGLL-DALQFEAPSRPKLVHRLDKDTSGVLLLARSANNAG-----YF 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS R + YWALVVG P ++G+I PL + G+ + N
Sbjct: 167 SKAFSG---------RTAHKVYWALVVGVPSITEGLIDLPLARQPGSGGEKMHVDEEN-- 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
A T Y+VI+ + + WL+L PLTGR HQLR H + +G PIVGD KYG +
Sbjct: 216 ----GATAKTLYRVIERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGDGKYGGKEA 270
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESG 214
R+ HP + D + ++P+ E G DLE+G
Sbjct: 271 FLTGGVSRKMHLHARRLVIPHPDGSNLDVHADLPEHFLESMSLLGFDLENG 321
>gi|397676697|ref|YP_006518235.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397386|gb|AFN56713.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 374
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 39/231 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L ++ P+LVHRLD+D+SG+L++ R+ +A +
Sbjct: 113 LATQGGTKTHYHLDGLL-DALQFEAPSRPKLVHRLDKDTSGVLLLARSANNAG-----YF 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS R + YWALVVG P ++G+I PL + G+ + N
Sbjct: 167 SKAFSG---------RTAHKVYWALVVGVPSITEGLIDLPLARQPGSGGEKMHVDEEN-- 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
A T Y+VI+ + + WL+L PLTGR HQLR H + +G PIVGD KYG +
Sbjct: 216 ----GATAKTLYRVIERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGDGKYGGKEA 270
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESG 214
R+ HP + D + ++P+ E G DLE+G
Sbjct: 271 FLTGGVSRKMHLHARRLVIPHPDGSNLDVHADLPEHFLESMSLLGFDLENG 321
>gi|254294409|ref|YP_003060432.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254042940|gb|ACT59735.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 343
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 122/274 (44%), Gaps = 67/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG R +D +A LT + PRLVHRLD+D+SG+LV+ +T SA + FR
Sbjct: 117 LAVQGGTKTLRHVDGMA-NALTRPGQDKPRLVHRLDKDTSGLLVLAKTAQSAAEMSKHFR 175
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R L + YWA+V G P ++G + + K + +T +
Sbjct: 176 S--------------RELDKIYWAVVKGVPNPNEGELRGWMMKAHGPGQDKELMTAGVHG 221
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q A A+T ++V+ + +W+ L P TGRKHQLR H +E+ G I+GD KY
Sbjct: 222 Q-KGAVFAITDFKVVSTAGQRASWVALKPSTGRKHQLRYHMSEI-GNSILGDAKY----- 274
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ E P GL P LHLH + + +P
Sbjct: 275 -------------TCDRETPA------GL----------PPGLHLHARALRMPR------ 299
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
G DV +++APLP HM++++D
Sbjct: 300 ----RRGSDV------EVIAPLPEHMKKTFDFFG 323
>gi|393722169|ref|ZP_10342096.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26605]
Length = 374
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 111/240 (46%), Gaps = 41/240 (17%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L D P+LVHRLD+D+SG LV+ RT +A F
Sbjct: 124 LATQGGTKTIEHVDGLL-DALQDDLEGRPKLVHRLDKDTSGALVIARTARAAG-----FL 177
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS+ R ++ YWALVVG P G I P+GK G+ ++ D
Sbjct: 178 SKSFSS---------RTARKTYWALVVGVPSIEDGTIELPIGKQPGSGGEK-----MHVD 223
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A TRY+VI+ + W++L P TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 224 E-KEGSPARTRYRVIEMAGTTTAWVELIPYTGRTHQLRVHLA-AIGHPIVGDGKYGGQAA 281
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGSI--LEKQP 221
R+ + HP D E+P E G D G+ LE+ P
Sbjct: 282 FLTGNISRKMHLHSRRIRIDHPDGGQIDVQAELPTHFAESLKQLGFDEMLGNTMPLEEPP 341
>gi|103487583|ref|YP_617144.1| pseudouridine synthase RluD [Sphingopyxis alaskensis RB2256]
gi|98977660|gb|ABF53811.1| ribosomal large subunit pseudouridine synthase C [Sphingopyxis
alaskensis RB2256]
Length = 405
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 112/227 (49%), Gaps = 41/227 (18%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L YD P+LVHRLD+D+SG L++ RT +A +
Sbjct: 114 LATQGGTKTEHHVDGLL-DALKYDAPVRPKLVHRLDKDTSGALLIARTPRAAA-----WF 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS R ++ YWA+VVG P ++G I PL K G+ + +D
Sbjct: 168 AKSFS---------NRSAKKTYWAIVVGVPDIAQGEIDLPLAKQPGSGGEKMHV----HD 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
++++ TRY+VI + + W++L PLTGR HQLRVH A + G PIVGD KYG +
Sbjct: 215 SGLASK---TRYRVIDRAGNSAAWVELQPLTGRTHQLRVHMAAI-GHPIVGDGKYGGKGA 270
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLES 213
R+ + HP D + ++P HF L++
Sbjct: 271 FLTGTISRKLHLHSRRLRIDHPDGGVIDVSADVPD----HFAASLDA 313
>gi|334343948|ref|YP_004552500.1| RluA family pseudouridine synthase [Sphingobium chlorophenolicum
L-1]
gi|334100570|gb|AEG47994.1| pseudouridine synthase, RluA family [Sphingobium chlorophenolicum
L-1]
Length = 432
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 47/237 (19%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L Y+ + P+LVHRLD+D+SG L++ RT SA F
Sbjct: 175 LATQGGTKTDDHVDGLL-DALEYELDQRPKLVHRLDKDTSGALLIARTARSAA-----FF 228
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+V+G P G++ P+ K G+ V+ +
Sbjct: 229 AKAFSS---------RTARKVYWAIVMGVPSIEDGMVELPIAKQPGTGGEK---MHVDEE 276
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + ++ +RY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 277 EGLPSR---SRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGKEA 332
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPKEKTLHF-------GLDLESGSI 216
R+ + HP D E+P+ HF G DL +G +
Sbjct: 333 FLSGTISRKMHLHARRIRVDHPDGGRVDVRAELPE----HFAASLASLGFDLSTGDL 385
>gi|294011526|ref|YP_003544986.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
japonicum UT26S]
gi|292674856|dbj|BAI96374.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
japonicum UT26S]
Length = 436
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 47/237 (19%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D + P+LVHRLD+D+SG L++ RT SA
Sbjct: 179 LATQGGTKTDDHVDGLL-DALEFDLDQRPKLVHRLDKDTSGALLIARTARSAAYF----- 232
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+V+G P G+I P+ K G+ V+ +
Sbjct: 233 AKAFSS---------RTARKVYWAIVMGVPSIEDGMIELPIAKQPGTGGEK---MHVDEE 280
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + ++ +RY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 281 EGLPSR---SRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGKDA 336
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPKEKTLHF-------GLDLESGSI 216
R+ + HP D E+P+ HF G DL +G +
Sbjct: 337 FLSGTISRKMHLHARRIRVDHPDGGPVDVRAELPE----HFAASLASLGFDLSAGDL 389
>gi|390169265|ref|ZP_10221206.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
indicum B90A]
gi|389588128|gb|EIM66182.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
indicum B90A]
Length = 436
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 47/237 (19%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D + P+LVHRLD+D+SG L++ RT SA
Sbjct: 179 LATQGGTKTDDHVDGLL-DALEFDLDQRPKLVHRLDKDTSGALLIARTARSAAYF----- 232
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+V+G P G+I P+ K G+ V+ +
Sbjct: 233 AKAFSS---------RTARKVYWAIVMGVPSIEDGMIELPIAKQPGTGGEK---MHVDEE 280
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + ++ +RY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 281 EGLPSR---SRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGKDA 336
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIPKEKTLHF-------GLDLESGSI 216
R+ + HP D E+P+ HF G DL +G +
Sbjct: 337 FLSGTISRKMHLHARRIRVDHPDGGRVDVRAELPE----HFAASLASLGFDLSAGDL 389
>gi|392382035|ref|YP_005031232.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
gi|356877000|emb|CCC97801.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
Length = 339
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 118/274 (43%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + +D + L +D E P+LVHRLD+D+SG+L++ R
Sbjct: 120 LAVQGGTNTTKHLDAML-DALRFDAKERPKLVHRLDKDTSGVLLLARN------------ 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
TF+ASK R +++ YWA VG P+ +G I L K G +R+ +D
Sbjct: 167 --TFAASKLTEQFRGRDVRKIYWAATVGVPKPYQGKIDLALAKEGGPQG--ERVAGDEDD 222
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ AVT Y V++ ++ + P TGR HQLRVH +GTPI+GD KY Q
Sbjct: 223 ----GKRAVTYYTVLENLGKQAAFVAMWPRTGRTHQLRVHM-NAIGTPILGDGKYAGQ-- 275
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
G L I Q +LHLH + + LP+ +
Sbjct: 276 ---------------------------GAHLPGAEI---QKKLHLHARRLILPHPRGGNR 305
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ ++ APLP HM +W L
Sbjct: 306 MIDVT--------------APLPDHMLTTWKYLG 325
>gi|119383542|ref|YP_914598.1| RluA family pseudouridine synthase [Paracoccus denitrificans
PD1222]
gi|119373309|gb|ABL68902.1| ribosomal large subunit pseudouridine synthase C [Paracoccus
denitrificans PD1222]
Length = 348
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 120/280 (42%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L T L + Y + P+LVHRLD+D+SG+L++ RT A L F
Sbjct: 109 LPSQGGSGQGDRHVDGLT-TALMFGYKDRPKLVHRLDKDTSGVLLLARTDRIARALSEAF 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPR-----CSKGVISAPLGKVVVDNGKSDRI 114
R R+ ++ YWA V G P G++ AP + K +
Sbjct: 168 RH--------------RLTRKIYWAAVAGVPHPRMGSIKYGLVKAPGRGRGGEGEKMMAV 213
Query: 115 TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
A+ A T Y V+ +W+ + P+TGR HQLR H AE+ G PIVGD K
Sbjct: 214 HPSAVAATEGAKRAHTDYAVLDALGGRVSWVAMVPVTGRTHQLRAHMAEI-GHPIVGDGK 272
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E L G + G + + +LHLH + +
Sbjct: 273 YG-----------------GSGQE-----NLGDGWGAQLGGEISR--KLHLHARMIRF-- 306
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I K + + + APLP HM R+W L
Sbjct: 307 -EHPITK------------KLITVTAPLPEHMSRTWKTLG 333
>gi|255073601|ref|XP_002500475.1| predicted protein [Micromonas sp. RCC299]
gi|226515738|gb|ACO61733.1| predicted protein [Micromonas sp. RCC299]
Length = 327
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 121/274 (44%), Gaps = 61/274 (22%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRI--- 77
L +D + PP VHRLDRD++G L++ RT+ + L F+++ A + + K
Sbjct: 61 LRFDLAHPPMTVHRLDRDTTGCLILARTREAQRTLAGYFQDRARVARRGSGRSTKTTSPE 120
Query: 78 ----LQRWYWALVVGTPR-CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 132
++R YWALV T S+G I A L V G V A+ A T Y
Sbjct: 121 SLGDVRRVYWALVSATSTLASRGTIDAAL--VTTHAG-------VTLKPGAGAKPAATDY 171
Query: 133 QVIK--------PSCHGY--TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
+VI P+ G L L P TGRKHQLRVHCA L IVGDYKYG++ +
Sbjct: 172 EVISRASPDSCAPTAAGRVPAVLALVPRTGRKHQLRVHCAGALDAAIVGDYKYGYRDVSR 231
Query: 183 -------WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH--CKEMTLP 233
W++ D+ + S + T G + LHLH C E T P
Sbjct: 232 TGGVADDWRRVL-RDIDERSTRRLNDAGT-------ADGEVRGAGVPLHLHARCVEFTHP 283
Query: 234 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQ 267
SSG E +++VAP PSHM
Sbjct: 284 -----------SSG------ERVRVVAPAPSHMS 300
>gi|339320094|ref|YP_004679789.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Midichloria mitochondrii IricVA]
gi|338226219|gb|AEI89103.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Midichloria mitochondrii IricVA]
Length = 319
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 23/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI S+D +A+ L +D E P+LVHR+D+++SGIL+M RT +A + IF
Sbjct: 112 LAVQGGNGIEISVDHIASE-LKFDAKEKPKLVHRIDKETSGILIMARTIKAAQEIADIF- 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ R + + Y A+V G P+ K VI PL K G + N
Sbjct: 170 -------------QNRDIDKKYLAIVQGKPKELKEVIDIPLEKKDSGAGFENMAPSKNGK 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
Q A+TRY+V+ + L++ P+TGRKHQ+R H A + G PI+ D KY +
Sbjct: 217 Q------AITRYRVLAHNERA-ALLEVIPVTGRKHQIRAHLATI-GCPIISDKKYNKE 266
>gi|295688947|ref|YP_003592640.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430850|gb|ADG10022.1| pseudouridine synthase, RluA family [Caulobacter segnis ATCC 21756]
Length = 332
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 93/177 (52%), Gaps = 22/177 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + ID+L + + + PRLVHRLDRD+SG+L++G+T ++A L F
Sbjct: 110 LAVQGGTKTTKHIDKLLSAW--GEGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLSGAF- 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-NN 119
KR Q+ YWA+V G P ++GV+ L K G DR VV
Sbjct: 167 -------------AKRKAQKTYWAIVAGNPHPTEGVMELHLAK----RGVGDRELVVPAQ 209
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ AQ A T + I + TW+ L P TGR HQLR H + +G PI+GD KYG
Sbjct: 210 PKDADAQPAETEFVTISRAGPRVTWMALRPHTGRTHQLRAHM-KAMGHPILGDPKYG 265
>gi|427408845|ref|ZP_18899047.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
gi|425713155|gb|EKU76169.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
Length = 450
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 39/233 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D P+LVHRLD+D+SG L++ R+ SA
Sbjct: 200 LATQGGTKTDEHVDRLL-DGLIFDAESRPKLVHRLDKDTSGALLLARSSRSAAHF----- 253
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+V+G P G+I P+ K G+ V+ +
Sbjct: 254 AKAFSS---------RTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEK---MHVDEE 301
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + A+ TRY+VI+ + + W++L P TGR HQLRVH A +G P+VGD KYG +
Sbjct: 302 EGLPAR---TRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPLVGDGKYGGKDS 357
Query: 181 --------------RKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSI 216
R+ + HP D E+P+ + G DL G +
Sbjct: 358 FLSGSISRKMHLHARRIRVDHPDGGRIDMKAELPEHFLNSLIALGFDLSLGDM 410
>gi|94497617|ref|ZP_01304185.1| pseudouridylate synthase, partial [Sphingomonas sp. SKA58]
gi|94422834|gb|EAT07867.1| pseudouridylate synthase [Sphingomonas sp. SKA58]
Length = 394
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 22/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D+L L +D P+LVHRLD+D+SG L++ RT +A
Sbjct: 196 LATQGGTKTDEHVDKLL-DALLFDAESRPKLVHRLDKDTSGALLLARTSRAAAHF----- 249
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWALV+G P G+I P+ K G+ V+ +
Sbjct: 250 AKAFSS---------RTARKVYWALVMGVPSIEDGMIELPIAKQPGTGGEK---MHVDEE 297
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + A+ +RY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 298 EGLPAR---SRYRVIERAGNRAAWIELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGK 351
>gi|327282066|ref|XP_003225765.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Anolis carolinensis]
Length = 361
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 49/258 (18%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDY---SEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG ++ I ++ T Y +EP L HRLD++++G++V+ R Q A +
Sbjct: 108 LPVHGGPKVKTCITDVLPTLAKMLYGMKAEPLHLCHRLDKETTGVMVLARDQDIAHKVQE 167
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+F+ R +++ YWA+ VG P+ ++G++ P+ + V++ +S +
Sbjct: 168 LFKT--------------RQVEKKYWAVCVGHPKPTEGLVDIPIVEKEVESHQSHFKMAL 213
Query: 118 NNDQIMS--------------AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
+ MS A AVTRY+V+ SC ++L+L P+TG KHQLRVH A
Sbjct: 214 APNYYMSHEDGKTFKVRQHRDAHSAVTRYRVLS-SCSSCSFLELHPITGVKHQLRVHMAF 272
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 223
LG PI+GD+KY W + P +++P+ GL+ L L
Sbjct: 273 GLGCPILGDHKYSH-----WNKLAP--------QKLPQSALKRLGLEQVKARYLP----L 315
Query: 224 HLHCKEMTLPNVSQAIQK 241
HLH + LP ++ + +K
Sbjct: 316 HLHAYTLILPEINGSGEK 333
>gi|393721178|ref|ZP_10341105.1| RluA family pseudouridine synthase [Sphingomonas echinoides ATCC
14820]
Length = 369
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 109/234 (46%), Gaps = 39/234 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L D P+LVHRLD+D+SG L++ RT +A +
Sbjct: 119 LATQGGTKTIEHVDGLL-DALQDDLEGRPKLVHRLDKDTSGALLIARTARAAA-----YF 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS+ R ++ YWALVVG P G+I P+ K G+ ++ D
Sbjct: 173 SKSFSS---------RTARKTYWALVVGVPSIEDGMIELPIAKQPGTGGEK-----MHVD 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A TRY+VI+ + WL+L P TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 219 E-KEGSPARTRYRVIEMAGTTTAWLELIPYTGRTHQLRVHLA-AIGHPIVGDGKYGGQAA 276
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGSIL 217
R+ + HP + D E+P E G D G+ +
Sbjct: 277 FLTGNISRKMHLHSRRIRIDHPDGGAIDVQAELPTHFAESLKQLGFDEMLGNTM 330
>gi|16126223|ref|NP_420787.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|221234996|ref|YP_002517432.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13423445|gb|AAK23955.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|220964168|gb|ACL95524.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 331
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 93/177 (52%), Gaps = 22/177 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + ID+L + + + PRLVHRLDRD+SG+L++G+T ++A L F
Sbjct: 109 LAVQGGTKTTKHIDKLLSAW--GEGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLSGAF- 165
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-NN 119
KR Q+ YWA+V G P ++GV+ L K G DR VV
Sbjct: 166 -------------AKRKAQKTYWAIVAGNPHPTEGVMELHLAK----RGVGDRELVVPAQ 208
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ AQ A T + I + TW+ L P TGR HQLR H + +G PI+GD KYG
Sbjct: 209 PKDPDAQPAETEFVTISRAGPRVTWMALRPHTGRTHQLRAHM-KAMGHPILGDPKYG 264
>gi|405951014|gb|EKC18963.1| RNA pseudouridylate synthase domain-containing protein 4
[Crassostrea gigas]
Length = 354
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 26/201 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG G+R +I +L + + +VHRLD++++GI++ G+T+ A+ L F+
Sbjct: 108 IPSQGGEGVRLNIADLLPKLAERIHCDKLHMVHRLDKETTGIMLFGKTEEMASKLRKAFK 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT---VV 117
+ R +++ Y + G P +G+I+ P+ + V K R+T V
Sbjct: 168 D--------------RKVKKTYLVIAKGIPSLKEGIINVPIAEGEVGKDKRKRMTCIPVY 213
Query: 118 NND--QIMSAQH-----AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 170
N+D +M AVT Y+V+ S H L++SP TG KHQ+R H VL TP++
Sbjct: 214 NSDTKHVMHKTKKKTVPAVTHYKVVANS-HSCALLEVSPETGVKHQIRTHLLHVLNTPVL 272
Query: 171 GDYKYGWQTHRKWKQFHPSDL 191
GD+KY + T K Q PSD+
Sbjct: 273 GDHKYSYLTEIK-PQILPSDV 292
>gi|395491878|ref|ZP_10423457.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26617]
Length = 373
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 110/234 (47%), Gaps = 39/234 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L D P+LVHRLD+D+SG L++ RT +A +
Sbjct: 123 LATQGGTKTIEHVDGLL-DALQDDMEGRPKLVHRLDKDTSGALLIARTARAAA-----YF 176
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS+ R ++ YWALVVG P G+I P+ K G+ ++ D
Sbjct: 177 SKSFSS---------RTARKTYWALVVGVPSIEDGMIELPIAKQPGTGGEK-----MHVD 222
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A TRY+VI+ + WL+L P TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 223 E-KEGSPARTRYRVIEMAGTTTAWLELIPHTGRTHQLRVHLA-AIGHPIVGDGKYGGQAA 280
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGSIL 217
R+ + HP + D E+P E G D G+++
Sbjct: 281 FLTGNISRKMHLHSRRIRIDHPDGGAIDVQAELPTHFSESLKQLGFDEMLGNMM 334
>gi|381203577|ref|ZP_09910683.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 456
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 39/233 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D P+LVHRLD+D+SG L++ R+ SA
Sbjct: 206 LATQGGTKTDEHVDRLL-DGLIFDAESRPKLVHRLDKDTSGALLLARSSRSAAHF----- 259
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+V+G P G+I P+ K G+ V+ +
Sbjct: 260 AKAFSS---------RTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEK---MHVDEE 307
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + A+ TRY+VI+ + + W++L P TGR HQLRVH A +G P+VGD KYG +
Sbjct: 308 EGLPAR---TRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPLVGDGKYGGKDS 363
Query: 181 --------------RKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSI 216
R+ + HP D E+P+ + G DL G +
Sbjct: 364 FLSGSISRKMHLHARRIRVDHPDGGRIDMKAELPEHFLNSLVALGFDLSLGDM 416
>gi|404254692|ref|ZP_10958660.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 373
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 110/234 (47%), Gaps = 39/234 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L D P+LVHRLD+D+SG L++ RT +A +
Sbjct: 123 LATQGGTKTIEHVDGLL-DALQDDLEGRPKLVHRLDKDTSGALLIARTARAAA-----YF 176
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS+ R ++ YWALVVG P G+I P+ K G+ ++ D
Sbjct: 177 SKSFSS---------RTARKTYWALVVGVPSIEDGMIELPIAKQPGTGGEK-----MHVD 222
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A TRY+VI+ + WL+L P TGR HQLRVH A +G PIVGD KYG Q
Sbjct: 223 E-KEGSPARTRYRVIEMAGTTTAWLELIPHTGRTHQLRVHLA-AIGHPIVGDGKYGGQAA 280
Query: 180 -------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGSIL 217
R+ + HP + D E+P E G D G+++
Sbjct: 281 FLTGNISRKMHLHSRRIRIDHPDGGAIDVQAELPTHFSESLKQLGFDEMLGNMM 334
>gi|347758850|ref|YP_004866412.1| RluA family pseudouridine synthase protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591368|gb|AEP10410.1| pseudouridine synthase, RluA family protein [Micavibrio
aeruginosavorus ARL-13]
Length = 362
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 61/272 (22%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG+ I R ID L D +P +L HRLDRD+SG+L++ R + +A L F
Sbjct: 137 VQGGMKIARHIDGLLEHLADRDGVKP-KLCHRLDRDTSGVLLLARDRETAKRLGRAF--- 192
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
E R ++++YWAL P+ + GVI APL + G + +V+ +
Sbjct: 193 -----------EGRNIRKYYWALTAPAPQMNDGVIDAPL---IKGEGPYKDMMIVDAE-- 236
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
+ + + T +QVI+ + ++ P TGR HQ+RVH AE G P++GD KYG
Sbjct: 237 -NGKFSRTEFQVIERAGPAAAFVMFWPRTGRTHQIRVHAAEG-GFPLIGDEKYG------ 288
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
D ++ + +H + PRLHLH + +P+ ++
Sbjct: 289 ---------HADPEKDDARINMIH---------DMNLAPRLHLHAWRIVVPHPTRK---- 326
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+++ APL +++SW +
Sbjct: 327 -----------GMIEVTAPLADDLRKSWKAFD 347
>gi|398384716|ref|ZP_10542744.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
gi|397721996|gb|EJK82541.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
Length = 447
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 39/233 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D P+LVHRLD+D+SG L++ R+ SA
Sbjct: 197 LATQGGTKTDEHVDRLL-DGLIFDAESRPKLVHRLDKDTSGALLIARSSRSAAHF----- 250
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+V+G P + G+I P+ K G+ V+
Sbjct: 251 AKAFSS---------RTARKVYWAIVIGVPSINDGMIELPIAKQPGTGGEK---MHVDEA 298
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + A+ TRY+VI+ + + W++L P TGR HQLRVH A +G P+VGD KYG +
Sbjct: 299 EGLPAR---TRYRVIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPLVGDGKYGGKES 354
Query: 181 --------------RKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSI 216
R+ + HP D E+P+ + G DL G +
Sbjct: 355 FLSGSISRKMHLHARRIRVDHPDGGRIDVKAELPEHFLASLVSLGFDLSLGDM 407
>gi|254419979|ref|ZP_05033703.1| pseudouridine synthase, RluA family [Brevundimonas sp. BAL3]
gi|196186156|gb|EDX81132.1| pseudouridine synthase, RluA family [Brevundimonas sp. BAL3]
Length = 341
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 20/182 (10%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG R +D L + + + PRLVHRLDRD+SG+L++G+ +A L F
Sbjct: 120 LAVQGGTKTSRHVDRLLSAW--GEGMDRPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAF- 176
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+R ++ YWA+V+G P+ G I PL K +++ + R +
Sbjct: 177 -------------ARRQAKKTYWAIVIGNPKPYSGQIDMPLKKTGINDFEMMRPADRKDP 223
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ A+ A T + I + H W+ L P TGR HQLR H A + G PI+GD KYG +
Sbjct: 224 K---AEPAETAFSTISRASHRAAWMALRPFTGRTHQLRAHMAGI-GHPILGDPKYGDEKS 279
Query: 181 RK 182
R+
Sbjct: 280 RE 281
>gi|452752881|ref|ZP_21952620.1| Ribosomal large subunit pseudouridine synthase C [alpha
proteobacterium JLT2015]
gi|451959703|gb|EMD82120.1| Ribosomal large subunit pseudouridine synthase C [alpha
proteobacterium JLT2015]
Length = 395
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 95/178 (53%), Gaps = 22/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG G + +D L L +D E P+LVHRLD+D+SG+L++ RT +A
Sbjct: 115 LATQGGTGQKAHVDGLL-DALKFDRDERPKLVHRLDKDTSGVLLLARTARAAAHF----- 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS R ++ YWA+V+G P G I PL K G+ ++ D
Sbjct: 169 SKAFSG---------RTARKIYWAIVMGVPEIPDGRIDLPLAKQPGTGGEK-----MHVD 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
Q Q A +RY+ I + + WL+L PLTGR HQLRVH E +G PIVGD KYG +
Sbjct: 215 Q-EGGQRAASRYRRIDRAANRAAWLELQPLTGRTHQLRVHM-EAIGHPIVGDGKYGGK 270
>gi|402820828|ref|ZP_10870391.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
gi|402510331|gb|EJW20597.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 68/274 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG +D L + + E PRLVHRLDRD+SG+L++ + + +A+ L F
Sbjct: 109 LAVQGGSKTDWHVDAL--LDVLANKGERPRLVHRLDRDTSGVLLLAKHRKAASTLTKAF- 165
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
D E R + YWALV G PR +G I L K +G ++R+ +
Sbjct: 166 ----------ADRETR---KIYWALVHGVPRPEQGDIKLKLVKRAAGDG-NERVRPAEDH 211
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
I A A+TR+ V+ + ++W+ P+TGR HQ+R H A +G P+VGD KY
Sbjct: 212 DI-DAMRAITRFSVVGRAGQVFSWVAFMPITGRTHQIRAH-ALAIGHPLVGDNKYA---- 265
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+P ++E+G L +LHLH + + +P+ S
Sbjct: 266 ------------------LP---------EIEAGGELPN--KLHLHARMIDMPHPSGG-- 294
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
L + A L +HM SW +L
Sbjct: 295 --------------RLTVAADLQAHMAESWGLLG 314
>gi|75674513|ref|YP_316934.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74419383|gb|ABA03582.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
Length = 264
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 107/234 (45%), Gaps = 50/234 (21%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 47 KGGANLEASFD-----ALRFGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 101
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
S + YWA+V G P +G I PLG++ + G K D + +
Sbjct: 102 ISKT--------------YWAVVEGGPSEDEGAIDIPLGRLNEERGWWQKPDPNGLPSTT 147
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + + + TWL L PLTGR HQLRVHCA +G PIVGD YG Q
Sbjct: 148 KWKVLGRSSPDTSTVSGAGVQLTWLSLEPLTGRTHQLRVHCA-AMGWPIVGDNIYGTQ-- 204
Query: 181 RKWKQFHPSDLSKDSNEE-IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 233
+ L + NE+ +P+ LD +P LHLH +++ +P
Sbjct: 205 --------ASLRRSRNEQYVPR-------LD---------EPGLHLHARQIAIP 234
>gi|354594043|ref|ZP_09012086.1| hypothetical protein CIN_07820 [Commensalibacter intestini A911]
gi|353673154|gb|EHD14850.1| hypothetical protein CIN_07820 [Commensalibacter intestini A911]
Length = 325
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 119/271 (43%), Gaps = 69/271 (25%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG + ID + L +D P LVHRLD+D+SG+L++ R +A L + FR
Sbjct: 109 VQGGSNVTNHIDGIL-EALQFDSKYRPSLVHRLDKDTSGLLLIARHPAAAAKLAAAFRS- 166
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ YWA+ P G I PL KV NG N +
Sbjct: 167 -------------RDMKKTYWAITTRRPSPLSGRIDLPLLKVEYQNGSHIEAADAKNKE- 212
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
AQ A+T Y+V + ++L PLTGR HQLRVHCAE + PI+GD KY
Sbjct: 213 --AQRAITEYEVKDFAARKLALVELYPLTGRMHQLRVHCAE-MKAPILGDKKY------- 262
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
N+E+P +D S RLHLH +++ +P+ S
Sbjct: 263 -------------NKEMP-------FMDGFSQ-------RLHLHARQLDMPHPSGG---- 291
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
L + A LP HM+ +++ L
Sbjct: 292 ------------RLLVEAALPPHMKETFEHL 310
>gi|340028922|ref|ZP_08664985.1| ribosomal large subunit pseudouridine synthase C [Paracoccus sp.
TRP]
Length = 350
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 124/280 (44%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L A L + Y + P+LVHRLD+D+SG+L++ RT A L F
Sbjct: 111 LPSQGGSGQGDRHVDGLTA-ALMFGYKDRPKLVHRLDKDTSGVLLLARTDRIARSLSEAF 169
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKV--VVDNGKSDRITVV 117
R R+ ++ YWA V G P G I L K G+ +++ V
Sbjct: 170 RH--------------RLTRKIYWAAVAGVPSPRMGSIKYGLVKAPGRGRGGEGEKMMTV 215
Query: 118 NNDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ + S A+ A T + V+ W+ + P+TGR HQLR H A + G PIVGD K
Sbjct: 216 HPSAVASTEGAKRAHTDFAVLDALGSRTAWVAMVPVTGRTHQLRAHMAGI-GHPIVGDGK 274
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
YG S +E P + +G L G I K LHLH + +
Sbjct: 275 YG-----------------GSGQENPGDG---WGAQL-GGEISRK---LHLHARMIRF-- 308
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
I K + + + APLP HM R+W L
Sbjct: 309 -EHPITK------------KLITVTAPLPDHMVRTWKTLG 335
>gi|114570313|ref|YP_756993.1| ribosomal large subunit pseudouridine synthase C [Maricaulis maris
MCS10]
gi|114340775|gb|ABI66055.1| ribosomal large subunit pseudouridine synthase C [Maricaulis maris
MCS10]
Length = 330
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 95/179 (53%), Gaps = 24/179 (13%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ VQGG R +D L A D PRLVHRLD+D+SGIL++G+ + L
Sbjct: 107 LAVQGGSKTTRHLDGMLDAFGEGLDR---PRLVHRLDKDTSGILIVGKGPKATARL---- 159
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-- 117
K F + K ++ YWA+ +G P+ G I + K S+R T+V
Sbjct: 160 -AKAFQSHK---------TRKTYWAIAIGVPKPKMGEIKGFMRKAAASGVDSERETMVAA 209
Query: 118 -NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ D+ AQHA+TRY VI + +W+ L P+TGR HQLRVH A +GT I+GD KY
Sbjct: 210 GHGDE--GAQHALTRYVVIGEAGQKASWVALRPVTGRTHQLRVHLA-AMGTAILGDKKY 265
>gi|145355458|ref|XP_001421978.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582217|gb|ABP00272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 321
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 63/285 (22%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKT-------FSASKEDNDN---EKRILQR 80
+VHRLDRD+SG+LV+ RT +A L+++F +K+ A E D + +
Sbjct: 55 VVHRLDRDTSGVLVLARTAFAANRLNAMFAKKSRMDFTEIMRADMERGDAPSLSNDPVVK 114
Query: 81 WYWALVVGTP--RCSKGVISAPLGKVVVDNGKSDRITV---------------------- 116
YWAL P G I APL +V +G S V
Sbjct: 115 TYWALTSNPPPRGARSGWIEAPLTEVGDGDGYSTARLVGGWRVYDAKGGGVVVGTGESMR 174
Query: 117 --VNNDQIMSAQHAVTRYQVIKPSCH-GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 173
N+ +++ A+T ++V+ + G T L+L+P+TGRKHQLRVH A+ L +PI+GDY
Sbjct: 175 DKSNDAGSPASKAAMTHFKVLASAGEDGPTLLELTPITGRKHQLRVHLAKALSSPIIGDY 234
Query: 174 KYGWQTHRK-WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSI--LEKQPRLHLHCKEM 230
KYG+ R WK S + + ++ EK F L S+ + K P LHLH +
Sbjct: 235 KYGFNDRRAPWK----SRFTDIESADVESEKESDFWRKLRRASLRGVSKIP-LHLHAR-- 287
Query: 231 TLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQ---RSWDV 272
A+Q V SG + ++VA P H R++D+
Sbjct: 288 -------ALQFVHPESGV------STRVVAEPPPHFAAALRAFDL 319
>gi|429769324|ref|ZP_19301437.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
gi|429187338|gb|EKY28254.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
Length = 331
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + +D L + + + PRLVHRLDRD+SG+L++G+ +A L F
Sbjct: 110 LAVQGGTKTTKHVDRLLSAW--GEGMQRPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAF- 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+R ++ YWA+V+G P+ S G I L K +++ + R +
Sbjct: 167 -------------ARRQAKKTYWAIVIGNPKPSAGQIDMALKKTGINDFEMMRPAEAKDP 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + A T + I + H W+ L P TGR HQLR H A +G PI+GD KYG
Sbjct: 214 K---GEPAETAFATISRAAHRAAWMALRPFTGRTHQLRAHMA-AIGHPILGDPKYG 265
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 53/252 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ R++ A +
Sbjct: 460 LPVHGGPGVKNCIADVLPILAKMLMNMKAEPLHLCHRLDKETTGLMVLARSREVADRIRL 519
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
+F+ R +++ YWA+ VG+P ++G++ P+ + V + + ++T+
Sbjct: 520 LFK--------------TRQVEKIYWAISVGSPDPAEGIVEIPMVEREVQSHQPHYKMTL 565
Query: 117 VNNDQI-------------MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
N ++ +A++AVTRY+V+ S + L+L P+TG KHQLRVH A
Sbjct: 566 APNYRMSPEDGKVLKIRKNRNAENAVTRYRVLATSS-ACSLLELQPITGVKHQLRVHLAY 624
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE--EIPKEKTLHFGLDLESGSILEKQP 221
LG PI+GD+KY W + P L + + + ++ + K+ H
Sbjct: 625 GLGCPILGDHKYS-----HWSKLAPQKLPEITLKRLKLQQSKSRHLP------------- 666
Query: 222 RLHLHCKEMTLP 233
LHLH ++LP
Sbjct: 667 -LHLHAYRLSLP 677
>gi|363742563|ref|XP_001231937.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Gallus gallus]
Length = 354
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 132/263 (50%), Gaps = 53/263 (20%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ R + +A +
Sbjct: 104 LPVHGGPGVKNCIADVLPILAKMLVNMKAEPLHLCHRLDKETTGVMVLARNKEAADRIRL 163
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
+F+ R +++ YWA+ VG+P ++G++ P+ + V + + ++T+
Sbjct: 164 LFKT--------------RQVEKIYWAISVGSPDPAEGIVEIPMVEREVQSHQPHFKMTL 209
Query: 117 VNNDQI-------------MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
N ++ +A+ AVT+Y+V+ S + L+L P+TG KHQLRVH A
Sbjct: 210 APNYRMSPEDGKVLKIRKNRNAESAVTQYRVLA-SSSACSLLELQPITGVKHQLRVHLAY 268
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE--EIPKEKTLHFGLDLESGSILEKQP 221
LG PI+GD+KY W + P L + + + ++ + K+ H
Sbjct: 269 GLGCPILGDHKYS-----HWSKLAPQKLPEITLKRLKLQQSKSRHLP------------- 310
Query: 222 RLHLHCKEMTLPNVSQAIQKVQL 244
LHLH ++LP + +++ L
Sbjct: 311 -LHLHAYRLSLPLGTSGSKRIDL 332
>gi|329889168|ref|ZP_08267511.1| pseudouridine synthase, RluA family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844469|gb|EGF94033.1| pseudouridine synthase, RluA family protein [Brevundimonas diminuta
ATCC 11568]
Length = 331
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + ID L + + + PRLVHRLDRD+SG+L++G+ +A L F
Sbjct: 110 LAVQGGTKTTKHIDRLLSAW--GEGMDRPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAF- 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+R ++ YWA+V+G P+ S G I L K +++ + R +
Sbjct: 167 -------------ARRQAKKTYWAIVIGNPKPSAGQIDMALKKTGINDFEMMRPAEPKDP 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + A T + I + H W+ L P TGR HQLR H A +G PI+GD KYG
Sbjct: 214 K---GEPAETAFATISRAAHRAAWMALRPFTGRTHQLRAHMA-AIGHPILGDPKYG 265
>gi|126327383|ref|XP_001372198.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Monodelphis domestica]
Length = 364
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 47/259 (18%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L +EP L HRLD++++G++++ R + A +
Sbjct: 115 LPVHGGPGVKSCITDILPILAKMLFGHKAEPLHLCHRLDKETTGVMILARDKEMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+F+ + + + YWA+ VG P S G+I P+ K V + ++T+
Sbjct: 175 LFKTRQVT--------------KKYWAICVGVPMPSAGMIDIPIIEKEVQGQQQHHKMTL 220
Query: 117 VNNDQIMS-----------AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
N ++ + A AVT+Y+V+ S L+L P+TG KHQLRVH A L
Sbjct: 221 APNYRLENGKTVKVRPNRHAHIAVTQYRVLS-STLTCALLELQPVTGVKHQLRVHLAFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
G P++GD+KY W + P LS +++ GL+ L LHL
Sbjct: 280 GCPVLGDHKYS-----DWNKLAPQKLSVGILKKL--------GLEQAKTRYLP----LHL 322
Query: 226 HCKEMTLPNVSQAIQKVQL 244
H +++TLP + +++ L
Sbjct: 323 HAQQLTLPPLGPESEELNL 341
>gi|374998032|ref|YP_004973531.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357425457|emb|CBS88343.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 226
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 27/172 (15%)
Query: 5 GGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 64
GG + R D L + + +PP L HRLDRD+SG L++GR + + +F+
Sbjct: 34 GGPNLERHFD-----ALRFGFPKPPSLAHRLDRDTSGCLILGRHAKALRKIGILFQ---- 84
Query: 65 SASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS 124
N K + + YWA+V G P G I PL KV + K+ +V +
Sbjct: 85 --------NGK--VDKTYWAVVAGAPPQESGRIELPLAKV---SNKTGGWRIVGSPD--- 128
Query: 125 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q AVT Y V++ G TWL+L+P TGR HQ+RVHCA + G P+VGD +YG
Sbjct: 129 GQTAVTDY-VVRGQADGLTWLELTPHTGRTHQIRVHCASI-GCPLVGDPQYG 178
>gi|114797120|ref|YP_759725.1| RluA family pseudouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114737294|gb|ABI75419.1| pseudouridine synthase, RluA family [Hyphomonas neptunium ATCC
15444]
Length = 349
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 126/291 (43%), Gaps = 84/291 (28%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R +D L A + P LVHRLD+D+SG+L++ + +A L +FR
Sbjct: 111 LAVQGGSGQGRHVDGLIAGMDVDGHR--PVLVHRLDKDTSGVLLLAKHPAAAARLTELFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTP-------RC--SKGV--ISAPLGKVVVD-- 107
R + + YWA+ VG P RC KGV I+ P G VD
Sbjct: 169 --------------SREMDKVYWAVTVGVPSPQAGQIRCWMVKGVPDINEPSGYRPVDPY 214
Query: 108 ---NGKSDRITVVNNDQ-IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
DR ++ + Q + A+H++T Y V+ + W+ + P TGR HQLR H E
Sbjct: 215 ATKRRDGDRERMIRSAQGVEGARHSITDYVVVSTAGPKAAWVAMRPETGRMHQLRFHMLE 274
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 223
+ T I+GDYKY S E+P+ L G L
Sbjct: 275 -MNTSILGDYKY------------------KSRREVPQ--------GLAEG--------L 299
Query: 224 HLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
HLH + + +P + +K+VAPLP HM+ +++ L
Sbjct: 300 HLHARALIIPR----------------EHGKPIKIVAPLPPHMKETFETLG 334
>gi|148555622|ref|YP_001263204.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas
wittichii RW1]
gi|148500812|gb|ABQ69066.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas
wittichii RW1]
Length = 368
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L +D P+LVHRLD+D+SG+L++ RT +A
Sbjct: 119 LATQGGTKTDIHVDRLL-DALQFDAESRPKLVHRLDKDTSGVLLLARTSRAAAHF----- 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K FS+ R ++ YWA+ G P G+I P+ K G+ ++ D
Sbjct: 173 AKAFSS---------RTARKVYWAIATGVPSIDDGMIELPIAKQPGTGGEK-----MHVD 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ A TRY+VI+ + + W++L P TGR HQLRVH A +G PIVGD KYG
Sbjct: 219 E-KEGSPARTRYRVIERAGNRACWVELQPHTGRTHQLRVHLA-AIGHPIVGDGKYG 272
>gi|302382665|ref|YP_003818488.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193293|gb|ADL00865.1| pseudouridine synthase, RluA family [Brevundimonas subvibrioides
ATCC 15264]
Length = 350
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG R +D L + + E PRLVHRLDRD+SG+L++G+ +A L F
Sbjct: 129 LAVQGGTKTTRHVDRLLSAW--GEGMERPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAF- 185
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+R ++ YWA+V+G P+ + G IS L K +++ + I +
Sbjct: 186 -------------ARRQAKKTYWAIVMGLPKPADGQISVHLKKSGINDYE---IMRPADP 229
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ A+ A T Y VI + +W+ L P TGR HQLR H + +G PI+GD KYG
Sbjct: 230 KDPGAEPAETAYAVISHAAQRASWMALRPFTGRTHQLRAHM-KAIGHPILGDPKYG 284
>gi|359407956|ref|ZP_09200429.1| pseudouridine synthase, RluA family [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677022|gb|EHI49370.1| pseudouridine synthase, RluA family [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 319
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 94/175 (53%), Gaps = 26/175 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G R ID L + P+LVHRLD+D+SG+L++ R +A L + F
Sbjct: 110 LAVQGGSGTSRHIDGLVRAAFP---GQSPKLVHRLDKDTSGLLLLARHDRAARELAAGFA 166
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+KT + + Y ALV+G P ++G I+APL K GK +V+ D
Sbjct: 167 QKT--------------INKAYLALVIGDP-GAEGRINAPLRKA---GGKGAEKMIVDQD 208
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ Q AVT + + + + L L P+TGR HQLRVH A V GTPI+GD KY
Sbjct: 209 ---TGQTAVTDFLRLDKAGP-VSLLALRPVTGRTHQLRVHMAAV-GTPILGDGKY 258
>gi|337739499|ref|YP_004631227.1| RNA pseudouridine synthase [Oligotropha carboxidovorans OM5]
gi|386028517|ref|YP_005949292.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336093585|gb|AEI01411.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336097163|gb|AEI04986.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM5]
Length = 263
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 113/267 (42%), Gaps = 86/267 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 57 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 111
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YWA+V G P +G I PLG++ + G K D + +
Sbjct: 112 IGKT--------------YWAVVEGGPAEDEGEIDIPLGRLNAERGWWQKPDPNGLPSK- 156
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+R+ V+ +G +WL L PLTGR HQLRVHCA +G PIVGD YG
Sbjct: 157 ---------SRWSVLG-RNNGLSWLALEPLTGRTHQLRVHCA-AMGFPIVGDNIYG---- 201
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +P LHLH +E+ +P
Sbjct: 202 ----------------------NGPRFG-----------EPSLHLHAREIVVP------- 221
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQ 267
LS ++++AP+P+H+Q
Sbjct: 222 ---LS-----RNKPPVRVIAPVPAHLQ 240
>gi|209883418|ref|YP_002287275.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|209871614|gb|ACI91410.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
Length = 244
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 114/267 (42%), Gaps = 86/267 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YWA+V G P +G I PLG++ + G K D + +
Sbjct: 93 IGKT--------------YWAVVEGGPAEDEGEIDIPLGRLNAERGWWQKPDPNGLPSK- 137
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+R+ V+ +G +WL L PLTGR HQLRVHCA +G PIVGD YG
Sbjct: 138 ---------SRWSVLG-RNNGLSWLALEPLTGRTHQLRVHCA-AMGFPIVGDNIYG---- 182
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +P LHLH +E+ +P +S+
Sbjct: 183 ----------------------NGPRFG-----------EPSLHLHAREIVVP-LSRNKP 208
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQ 267
V +++AP+P+H+Q
Sbjct: 209 PV--------------RVIAPVPAHLQ 221
>gi|348573903|ref|XP_003472730.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Cavia porcellus]
Length = 375
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 121/259 (46%), Gaps = 47/259 (18%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G+R I E + A L +EP L HRLD++++G++V+ + A +
Sbjct: 113 LPVHGGPGVRLCISEVLPILAKVLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQIQE 172
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS------ 111
+FR + + + YWA+ V P S GV+ P+ + V +
Sbjct: 173 LFRTRQVA--------------KKYWAVTVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTL 218
Query: 112 ------DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
DR VV +A+ AVT+YQV+ S ++L P+TG KHQLRVH + L
Sbjct: 219 SPSYRMDRGKVVRVRASQNARVAVTQYQVLS-STVSSALVELQPVTGIKHQLRVHLSFGL 277
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
P++GD+KY W + P +++P GL+ + LHL
Sbjct: 278 DCPVLGDHKYS-----AWNKLAP--------QKLPAGTLKRLGLEQSKARYIP----LHL 320
Query: 226 HCKEMTLPNVSQAIQKVQL 244
H +++TLP + +++QL
Sbjct: 321 HARQLTLPPLGFRKEELQL 339
>gi|288960501|ref|YP_003450841.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
gi|288912809|dbj|BAI74297.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
Length = 226
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 27/172 (15%)
Query: 5 GGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 64
GG + R D L + + +PP L HRLDRD+SG L++GR + + +F+
Sbjct: 34 GGPNLERHFD-----ALRFGFPKPPSLAHRLDRDTSGCLILGRHAKALRKIGILFQ---- 84
Query: 65 SASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS 124
N K + + YWA+V G P G I PL K+ + K+ +V +
Sbjct: 85 --------NGK--VDKTYWAVVAGGPPQDSGRIELPLAKI---SNKTGGWRIVGSPD--- 128
Query: 125 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q AVT Y V++ G TWL+L+P TGR HQ+RVHCA + G P++GD +YG
Sbjct: 129 GQSAVTDY-VVRGQADGLTWLELTPHTGRTHQIRVHCASI-GCPLIGDPQYG 178
>gi|197104730|ref|YP_002130107.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
gi|196478150|gb|ACG77678.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
Length = 243
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 116/255 (45%), Gaps = 63/255 (24%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEP----PRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
QGG G ++DEL + +++P PRL+HRLDRD+SG+++ +T+ +A L
Sbjct: 40 QGGRGQVNTLDEL-----LWAFAKPGKARPRLIHRLDRDTSGVILTAKTKPAAGFLGKAL 94
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVV-GTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
++ FS + Y A+V G P +KGVI PL + V+ G+ + V
Sbjct: 95 MKRAFS--------------KTYLAIVTPGAPVPAKGVIDRPLRR--VEEGREAYMRVCE 138
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
D A+ A +RY+ +K G ++LSP TGR HQLRVH A V G PI GD +YG
Sbjct: 139 PDHP-DAEAAASRYRTLK-EGEGAALVELSPETGRMHQLRVHLAAV-GRPIAGDARYGGA 195
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
+ PRL LH + + P+ +
Sbjct: 196 LMVGGRPV----------------------------------PRLMLHARALAFPHPAGG 221
Query: 239 IQKVQLSSGCDVSKL 253
++++ D+++L
Sbjct: 222 TKRLEAEPPSDMAEL 236
>gi|375006357|ref|YP_004975141.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357427615|emb|CBS90560.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 235
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
EL L EPP+L HRLDRD++G L++GRT + +F
Sbjct: 43 ELYLPFLGEPDGEPPKLAHRLDRDTAGCLILGRTPWALKRFGQMFAAGH----------- 91
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
+++ YWA+ G P GVI PL K + T++ + + Q AVT Y+V
Sbjct: 92 ---VEKTYWAVADGIPDAESGVIDLPLLKRIEPGASRSSWTILPDP---AGQPAVTEYRV 145
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G +WL+L P TGR HQ+RVHCA + G P+VG+ YG
Sbjct: 146 LGTGADGRSWLELRPRTGRTHQIRVHCAAI-GCPLVGEPFYG 186
>gi|197128104|gb|ACH44602.1| putative RIKEN cDNA 2410001E19 [Taeniopygia guttata]
Length = 283
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 39/232 (16%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG GI+ I + + A L +EP L HRLD++++G++V+ R++ +A +
Sbjct: 37 LPVHGGPGIKNCIADVLPILAKMLENMKAEPLHLCHRLDKETTGVMVLARSKEAAEKIRL 96
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV 116
+F+ R +++ YWA+V+G P +GV+ P+ + V + +S ++T+
Sbjct: 97 LFK--------------TRQVEKIYWAIVLGDPDPVEGVVEIPIVEKEVQSHQSHYKMTL 142
Query: 117 VNNDQIMS-------------AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 163
N ++ A+ AVTRY+ + + + L+L P+TG KHQ+RVH A
Sbjct: 143 APNYRLCPEDGKVMKTRGSRHAERAVTRYRRLC-AASACSLLELQPVTGVKHQIRVHLAY 201
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKE--KTLHFGLDLES 213
LG PI+GD+KY W + P L + + + E K H L L +
Sbjct: 202 GLGCPILGDHKYS-----HWSKLAPQKLPEHTLRRLKLEQSKARHLPLHLHA 248
>gi|431904388|gb|ELK09773.1| RNA pseudouridylate synthase domain-containing protein 4 [Pteropus
alecto]
Length = 374
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 75/296 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ R + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLNGHKAEPLHLCHRLDKETTGVMVLAREKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR + + + YWA+ V P S GV+ P+ + VV
Sbjct: 175 LFRTRQVA--------------KKYWAITVHIPVPSAGVVDIPIIEKVVQGQQQHHKMAL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ N A AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKVRTSRN-----AHMAVTQYQVLS-STLSSALLELQPVTGVKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILE 218
+ L PI+GD+KY W + P LS + ++ +P+ K H
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLIPQKLSVGTLKKLGLPQSKARHIP---------- 319
Query: 219 KQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LHLH +++ LP + S+ E L LV LP + RS L
Sbjct: 320 ----LHLHARQLILPALG--------------SRKEELSLVCKLPHYFVRSLSRLG 357
>gi|51473455|ref|YP_067212.1| pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|383752229|ref|YP_005427329.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. TH1527]
gi|383843065|ref|YP_005423568.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. B9991CWPP]
gi|81692307|sp|Q68XB2.1|RLUC_RICTY RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|51459767|gb|AAU03730.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|380758872|gb|AFE54107.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. TH1527]
gi|380759712|gb|AFE54946.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. B9991CWPP]
Length = 303
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 109/194 (56%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G++ + +GK G+ +IT +++D
Sbjct: 165 EK--------------LVIKKYFAITYGRPVKNVGIVKSNIGK---SKGRMFKITDIDSD 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILGDDKYGNKEV 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>gi|384250084|gb|EIE23564.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 508
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 116/256 (45%), Gaps = 54/256 (21%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PVQGG GI S+D L L +E PRLVHRLDR++SG LV+ RT +A L + FR
Sbjct: 185 LPVQGGDGIHVSLDSLLPH-LRLGSTETPRLVHRLDRNTSGALVVARTVDAAAWLSAAFR 243
Query: 61 E-----KTFSASKEDNDNEKRILQRWYWALVVGTP--RCSKGVISAPLGKVVVDNGKSDR 113
+ +T +A + +++ Y A+V P + +G I L +
Sbjct: 244 QPAEGLQTAAAGQARAFRGAPSIEKHYQAIVEDGPGLQEDRGFIGGRLPGPGGRD----- 298
Query: 114 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTG--------------------- 152
+ Q A+T+Y+V+ S G+ WL L P+TG
Sbjct: 299 ----------AGQRALTKYEVLGRSAEGFAWLALQPVTGMLLADAPGVCRCCSVQSPDTG 348
Query: 153 -RKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDL 211
RKHQLR HCAE LG P+VGD +YG R Q L KD+ P++ LD
Sbjct: 349 RRKHQLRKHCAE-LGAPVVGDGRYG--RLRSPAQLRLRQLLKDA--PAPEQDADEAELD- 402
Query: 212 ESGSILEKQPRLHLHC 227
+L L LHC
Sbjct: 403 ---RLLRCDSHLLLHC 415
>gi|149566907|ref|XP_001518233.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like, partial [Ornithorhynchus anatinus]
Length = 301
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 51/253 (20%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG GI+R I + + A L +EP L HRLD++++G++V+ R++ A +
Sbjct: 52 LPVHGGPGIQRCITDVLPILAKMLDGFRAEPLHLCHRLDKETTGVMVLARSRDVAHQVQG 111
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
F+ + + + YWA+ VG P S+GV+ P+ K V + ++T+
Sbjct: 112 QFKMRQVAKT--------------YWAVCVGVPVHSEGVVDIPIVEKEVQSQQQHHKMTL 157
Query: 117 VNNDQI-----------MSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAE 163
N + A AVT+Y+ + SC T L+L P+TG KHQLRVH A
Sbjct: 158 APNYHLEDGKMVKRRVSRDADSAVTQYRTLSGTTSC---TLLELRPITGVKHQLRVHLAF 214
Query: 164 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 223
LG PI+GD+KY W + P +++P GL+ + L
Sbjct: 215 GLGCPILGDHKYS-----NWNKLAP--------QKLPPVILKSLGLEQRKSRYIP----L 257
Query: 224 HLHCKEMTLPNVS 236
LH + +TLP +
Sbjct: 258 FLHAQRLTLPALG 270
>gi|315500130|ref|YP_004088933.1| pseudouridine synthase, rlua family [Asticcacaulis excentricus CB
48]
gi|315418142|gb|ADU14782.1| pseudouridine synthase, RluA family [Asticcacaulis excentricus CB
48]
Length = 335
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + ID L + + E PRLVHRLDRD+SG+L++G++ ++A L
Sbjct: 112 LAVQGGTKTKNHIDRLLSAW--GEGLERPRLVHRLDRDTSGVLLLGKSPSAAARLAGA-- 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KR + YWALV GTP +GVI PL V G +DR V+ D
Sbjct: 168 ------------FAKRKAYKTYWALVAGTPDPKEGVIDVPL----VKKGINDREMVMPAD 211
Query: 121 -QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ A+ A T Y I + H W+ L P TGR HQLR H + +G I+GD KY
Sbjct: 212 PKEPGAEAAETEYVTISRAAHRLAWMALRPHTGRTHQLRAHM-QAIGHCILGDPKY 266
>gi|90421737|ref|YP_530107.1| pseudouridine synthase [Rhodopseudomonas palustris BisB18]
gi|90103751|gb|ABD85788.1| pseudouridine synthase [Rhodopseudomonas palustris BisB18]
Length = 240
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S + L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 46 KGGANLESSFE-----FLRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGR 100
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
S + YWA+V G P +G I P+G++ + G +I
Sbjct: 101 ISKT--------------YWAVVEGGPIEDEGTIELPIGRLNAERGWWQKIDP------- 139
Query: 124 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q A T+++V+ G TWL L P+TGR HQLRVH A +G PIVGD YG
Sbjct: 140 EGQPATTKWRVLG-RGDGLTWLALQPVTGRTHQLRVHSA-AMGWPIVGDNIYG 190
>gi|414164763|ref|ZP_11421010.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410882543|gb|EKS30383.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 245
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 86/176 (48%), Gaps = 34/176 (19%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YWA+V G P ++G I PLG++ + G K D + +
Sbjct: 93 IGKT--------------YWAVVEGGPAENEGEIDIPLGRLDAERGWWQKPDPNGLPSK- 137
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+R+ V+ G TWL L P+TGR HQLRVHCA +G PIVGD YG
Sbjct: 138 ---------SRWTVMG-RGEGLTWLALEPITGRTHQLRVHCA-AMGFPIVGDNIYG 182
>gi|399077421|ref|ZP_10752399.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
gi|398035490|gb|EJL28731.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
Length = 329
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 90/176 (51%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG ID+L + + P+LVHRLDRD+SG+L++G+T +A L F
Sbjct: 107 LAVQGGTKTTHHIDKLLSAW--GEGVNRPKLVHRLDRDTSGVLLLGKTPGAAAKLSGAF- 163
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+R Q+ YWA+V G P ++GVI L K G DR VV +
Sbjct: 164 -------------ARRRAQKTYWAIVAGNPHPTEGVIELHLAK----RGVGDRELVVPAE 206
Query: 121 -QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ AQ A T + I + TW+ L P TGR HQLR H + +G PI+GD KY
Sbjct: 207 PKDPDAQPAETEFVSISRAGPRVTWMALRPHTGRTHQLRAHM-KAIGHPILGDPKY 261
>gi|73954899|ref|XP_546413.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Canis lupus familiaris]
Length = 404
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 125/278 (44%), Gaps = 59/278 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 116 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 175
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
FR + + + YWA+ V P S GV+ P+ + V
Sbjct: 176 FFRTRQVA--------------KKYWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTL 221
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK R+ N I AVT+Y V+ S ++L P+TG KHQLRVH
Sbjct: 222 SPDYRMDNGKMVRVRSNRNAHI-----AVTQYHVLS-STLSSALVELQPITGIKHQLRVH 275
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ ++T L
Sbjct: 276 LSFGLNCPILGDHKYS-----DWNKLAPQKLSLGTLKKLGLQQTKARHLP---------- 320
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 258
LHLH +++ LP + +K +LS C + + L L
Sbjct: 321 --LHLHARQLILPALGS--RKEELSLVCKLPRFFVLSL 354
>gi|42520290|ref|NP_966205.1| ribosomal large subunit pseudouridine synthase C [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410028|gb|AAS14139.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila melanogaster]
Length = 307
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG+ ++ S+ +L E ++VHRLDRD+SG+++ R A L F+
Sbjct: 108 VQGGVKVKISMSDLLDQIRE---GETFKIVHRLDRDTSGVIIFARNANVARYLMEEFK-- 162
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ Y AL G P G I PL K V +++ V N
Sbjct: 163 ------------GRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSG--QEKVVVDEN--- 205
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
S Q+A T + +I S H +LKL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 206 -SPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGDGKYGGK 259
>gi|58698525|ref|ZP_00373428.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila ananassae]
gi|225630144|ref|YP_002726935.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia sp. wRi]
gi|225677282|ref|ZP_03788264.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|58534967|gb|EAL59063.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila ananassae]
gi|225590674|gb|EEH11919.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225592125|gb|ACN95144.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia sp. wRi]
Length = 307
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG+ ++ S+ +L E ++VHRLDRD+SG+++ R A L F+
Sbjct: 108 VQGGVKVKISMSDLLDQIRE---GETFKIVHRLDRDTSGVIIFARNANVARYLMEEFK-- 162
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ Y AL G P G I PL K V +++ V N
Sbjct: 163 ------------GRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSG--QEKVVVDEN--- 205
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
S Q+A T + +I S H +LKL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 206 -SPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGDGKYGGK 259
>gi|351698955|gb|EHB01874.1| RNA pseudouridylate synthase domain-containing protein 4
[Heterocephalus glaber]
Length = 377
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I E + A +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISEVLPILAKMFHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R +++ YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVEKKYWAVTVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ N QI AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 CPSYRMDNGKMVKVRTSRNAQI-----AVTQYQVLS-STVSSALVELHPVTGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L P++GD+KY SD ++ + +++P + GL +
Sbjct: 275 LSFGLDCPVLGDHKY-------------SDWNRLAPQKLPIGTLKNLGLKQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++QL
Sbjct: 320 --LHLHARQLILPPLGSRKEELQL 341
>gi|99034362|ref|ZP_01314387.1| hypothetical protein Wendoof_01000811, partial [Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24]
Length = 264
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG+ ++ S+ +L E ++VHRLDRD+SG+++ R A L F+
Sbjct: 65 VQGGVKVKISMSDLLDQIRE---GETFKIVHRLDRDTSGVIIFARNANVARYLMEEFK-- 119
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ Y AL G P G I PL K V +++ V N
Sbjct: 120 ------------GRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSG--QEKVVVDEN--- 162
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
S Q+A T + +I S H +LKL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 163 -SPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGDGKYGGK 216
>gi|417399915|gb|JAA46938.1| Putative rna pseudouridylate synthase [Desmodus rotundus]
Length = 377
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 128/296 (43%), Gaps = 75/296 (25%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 VPVHGGPGVQLCISDVLPVLAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P + GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAVTVRVPVPAAGVVDIPIVEKEVQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
VD+GK R+ + AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRVDDGKMVRVRTSRKASV-----AVTQYQVLS-STVSSALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILE 218
+ L PI+GD+KY W + P LS + ++ +P+ K H
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNKLAPQKLSAGTLKKLGLPQAKARHIP---------- 319
Query: 219 KQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LHLH +++ LP + S+ E L LV LP + RS L
Sbjct: 320 ----LHLHARQLVLPALG--------------SREEELSLVCRLPRYFVRSLSRLG 357
>gi|167645622|ref|YP_001683285.1| RluA family pseudouridine synthase [Caulobacter sp. K31]
gi|167348052|gb|ABZ70787.1| pseudouridine synthase, RluA family [Caulobacter sp. K31]
Length = 329
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 89/176 (50%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG ID+L + + P+LVHRLDRD+SG+L++G+T +A L F
Sbjct: 107 LAVQGGTKTTHHIDKLLSAW--GEGVNRPKLVHRLDRDTSGVLLLGKTPAAAARLSGSF- 163
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KR Q+ YWA+V G P ++GVI L K G DR VV +
Sbjct: 164 -------------AKRKAQKTYWAIVAGNPHPTEGVIELHLAK----RGVGDRELVVPAE 206
Query: 121 -QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ Q A T + I + TW+ L P TGR HQLR H + +G PI+GD KY
Sbjct: 207 PKDPDGQPAETEFVSISRAGPRVTWMALRPHTGRTHQLRAHM-KAIGHPILGDPKY 261
>gi|109109212|ref|XP_001112402.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Macaca mulatta]
Length = 377
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 71/283 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+DNGK ++ N Q+ AVTRYQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKVRHSRNAQV-----AVTRYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLP 263
LHLH +++ LP + S+ E L LV LP
Sbjct: 320 --LHLHAQQLILPALG--------------SRKEDLNLVCKLP 346
>gi|27375585|ref|NP_767114.1| hypothetical protein blr0474 [Bradyrhizobium japonicum USDA 110]
gi|27348722|dbj|BAC45739.1| blr0474 [Bradyrhizobium japonicum USDA 110]
Length = 218
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 110/267 (41%), Gaps = 86/267 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLD+D+SG L++GR + + L +F+
Sbjct: 24 KGGANLEASFD-----ALRFGLPRPPVLAHRLDKDTSGCLILGRHRKATASLGLLFKHGK 78
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YW +V G P +G I PLG++ + G K D
Sbjct: 79 IGKT--------------YWTVVEGGPAEDEGTIDMPLGRLNAERGWWQKPDP------- 117
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q A+T ++V+ G+TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 118 ---EGQKAITNWKVMG-RGDGFTWLAMEPVTGRTHQLRVHSAAT-GWPIFGDNIYG---- 168
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +P+LHLH +E+ +P +S+
Sbjct: 169 ----------------------NGPRFG-----------EPKLHLHSREIVVP-ISR--- 191
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQ 267
E +++VAP P HM
Sbjct: 192 -----------NKEPVRVVAPAPPHMH 207
>gi|70608135|ref|NP_001020455.1| RNA pseudouridylate synthase domain-containing protein 4 [Rattus
norvegicus]
gi|81918145|sp|Q4QQT0.1|RUSD4_RAT RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|67678357|gb|AAH98023.1| RNA pseudouridylate synthase domain containing 4 [Rattus
norvegicus]
gi|149027812|gb|EDL83272.1| RNA pseudouridylate synthase domain containing 4 [Rattus
norvegicus]
Length = 377
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 127/294 (43%), Gaps = 71/294 (24%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R +++ YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ + + AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 RPSYRMDNGKMVKVRASRDAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
A L PI+GD+KY W + P LS + +++ GL +
Sbjct: 275 LAFGLDCPILGDHKYS-----DWNRLAPQKLSAGTLKKL--------GLQQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LHLH +++ LP + S+ E L L LP RS L
Sbjct: 320 --LHLHARQLILPALG--------------SRTEELLLACKLPHFFARSLRRLG 357
>gi|373450069|ref|ZP_09542141.1| 23S rRNA pseudouridylate synthase [Wolbachia pipientis wAlbB]
gi|371932731|emb|CCE77129.1| 23S rRNA pseudouridylate synthase [Wolbachia pipientis wAlbB]
Length = 307
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGG+ ++ SI +L E ++VHRLDRD+SG+++ R + A L F+
Sbjct: 108 VQGGVKVKISISDLLDQIRE---REIFKIVHRLDRDTSGVIIFARNASVAKYLMEEFK-- 162
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ Y AL G P G I PL K + + VV+ D
Sbjct: 163 ------------GRRIKKTYLALTFGIPSKDNGTIDYPLVKKYISGQEK---VVVDED-- 205
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
S Q+A T + +I H +LKL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 206 -SPQNATTHFSIIARLKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGDGKYGGK 259
>gi|384214166|ref|YP_005605329.1| hypothetical protein BJ6T_04430 [Bradyrhizobium japonicum USDA 6]
gi|354953062|dbj|BAL05741.1| hypothetical protein BJ6T_04430 [Bradyrhizobium japonicum USDA 6]
Length = 233
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 109/267 (40%), Gaps = 86/267 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLD+D+SG LV+GR + + L +F+
Sbjct: 39 KGGANLETSFD-----ALRFGLPRPPVLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGK 93
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YW +V G P +G + PLG++ + G K D
Sbjct: 94 IGKT--------------YWTVVEGGPAEDEGTVDMPLGRLNAERGWWQKPD-------- 131
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q A+T ++V+ G TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 132 --PEGQKAITNWKVMG-RGDGLTWLAMEPVTGRTHQLRVHSAAT-GWPIFGDNIYG---- 183
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +PRLHLH +E+ +P +S+
Sbjct: 184 ----------------------NGPRFG-----------EPRLHLHSREIVVP-ISR--- 206
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQ 267
E +++VAP P HM
Sbjct: 207 -----------NKEPIRVVAPAPPHMH 222
>gi|402895748|ref|XP_003910979.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Papio anubis]
Length = 377
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 71/283 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+DNGK ++ N Q+ AVTRYQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKVRHSRNAQV-----AVTRYQVLS-STVSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSMGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLP 263
LHLH +++ LP + S+ E L LV LP
Sbjct: 320 --LHLHAQQLILPALG--------------SRKEDLTLVCKLP 346
>gi|380817330|gb|AFE80539.1| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Macaca mulatta]
Length = 377
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 71/283 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+DNGK ++ N Q+ AVTRYQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKMRHSRNAQV-----AVTRYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLP 263
LHLH +++ LP + S+ E L LV LP
Sbjct: 320 --LHLHAQQLILPALG--------------SRKEDLNLVCKLP 346
>gi|344923106|ref|ZP_08776567.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 323
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 26/180 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG R +D A + RL HR+DRD+SG+LV+ + AT L F+
Sbjct: 113 LAVQGGTKTFRHVDRYLAGLGELNNCRY-RLTHRIDRDTSGLLVIAKKSDMATHLTQQFK 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ +++ YWA+ +G PR G++ APL K V G +++ V
Sbjct: 172 DGK--------------VEKIYWAVTLGQPRPGSGILKAPLIKAGV--GDKEKVVV---- 211
Query: 121 QIMSAQHAVTRYQVIK----PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + A+T YQ +K P W++L P TGR HQLRVHC L PI+GD KYG
Sbjct: 212 DFETGKPAITVYQTLKRLEKPRLPYMAWVELKPQTGRTHQLRVHCVH-LDAPILGDGKYG 270
>gi|353328603|ref|ZP_08970930.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont wVitB of Nasonia vitripennis]
Length = 307
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 113/271 (41%), Gaps = 74/271 (27%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGGI ++ SI E ++VHRLDRD+SG+++ R + A L F+
Sbjct: 108 VQGGIKVKISISXXLDQIRX---GEVFKIVHRLDRDTSGVIIFARNASVARYLMEEFK-- 162
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ Y AL G P G+I PL K + + V++ D
Sbjct: 163 ------------GRRIKKTYLALTSGIPSKDNGIIDYPLVKKYISGQEK---VVIDED-- 205
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
S Q+A T + +I H +LKL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 206 -SPQNATTHFSIISRLKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGDGKYGGK---- 259
Query: 183 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 242
K F ++ Q LH H + LPN +
Sbjct: 260 -KAFIDGVVN---------------------------QIHLHSHSLSLKLPNNKE----- 286
Query: 243 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
+ + AP+P H+++S +VL
Sbjct: 287 -------------ITITAPIPRHIEKSIEVL 304
>gi|414176666|ref|ZP_11430895.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410886819|gb|EKS34631.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 243
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 114/268 (42%), Gaps = 88/268 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YWA+V G+P ++G I PLG++ + G K D + +
Sbjct: 93 IDKT--------------YWAVVEGSPDANEGEIDIPLGRLDAERGWWQKPDPNGLPSR- 137
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
T ++V+ G TWL + P+TGR HQLRVHCA G PIVGD YG
Sbjct: 138 ---------TTWKVMG-RGDGLTWLAMEPITGRTHQLRVHCA-ASGWPIVGDNIYG---- 182
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +P LHLH +E+ +P
Sbjct: 183 ----------------------NGPRFG-----------EPSLHLHAREIVIP------- 202
Query: 241 KVQLSSGCDVSKLE-TLKLVAPLPSHMQ 267
+SK + ++++AP+P+H+
Sbjct: 203 ---------LSKNKPPVRVIAPVPAHLH 221
>gi|347526794|ref|YP_004833541.1| pseudouridine synthase [Sphingobium sp. SYK-6]
gi|345135475|dbj|BAK65084.1| pseudouridine synthase [Sphingobium sp. SYK-6]
Length = 447
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 97/178 (54%), Gaps = 22/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG +D L L ++ + PRLVHRLD+D+SG L++ RT +A
Sbjct: 121 LATQGGTKTHEHVDGLL-DALMFERDDRPRLVHRLDKDTSGALLLARTARAAAQF----- 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K+FS+ R ++ YWA+V+G P + GVI PL K G+ V+ +
Sbjct: 175 AKSFSS---------RTARKVYWAIVMGVPDVADGVIDLPLAKQPGTGGEK---MHVDEE 222
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
M A+ +RY++I+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 223 NGMPAR---SRYRIIERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGK 276
>gi|355567206|gb|EHH23585.1| hypothetical protein EGK_07073 [Macaca mulatta]
gi|355752781|gb|EHH56901.1| hypothetical protein EGM_06396 [Macaca fascicularis]
Length = 377
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 71/283 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+DNGK ++ N Q+ AVTRYQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKMRHSRNAQV-----AVTRYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLP 263
LHLH +++ LP + S+ E L LV LP
Sbjct: 320 --LHLHAQQLILPALG--------------SRKEDLNLVCKLP 346
>gi|383422273|gb|AFH34350.1| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Macaca mulatta]
Length = 377
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 71/283 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+DNGK ++ N Q+ AVTRYQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKMRHSRNAQV-----AVTRYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLP 263
LHLH +++ LP + S+ E L LV LP
Sbjct: 320 --LHLHAQQLILPALG--------------SRKEDLNLVCKLP 346
>gi|190570815|ref|YP_001975173.1| ribosomal large subunit pseudouridine synthase C [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019659|ref|ZP_03335464.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
gi|190357087|emb|CAQ54492.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212994700|gb|EEB55343.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
Length = 307
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGGI ++ SI +L E ++VHRLDRD+SG+++ R + A L F+
Sbjct: 108 VQGGIKVKISISDLLDQIRE---REIFKIVHRLDRDTSGVIIFARNASVAKYLMEEFK-- 162
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
R +++ Y AL G P G I PL K + + VV+ D
Sbjct: 163 ------------GRRIKKTYLALTFGIPSKDNGTIDYPLVKKYISGQEK---VVVDED-- 205
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
S Q+A T + +I H +LKL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 206 -SPQNATTHFLIIARLKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGDGKYGGK 259
>gi|299133083|ref|ZP_07026278.1| pseudouridine synthase [Afipia sp. 1NLS2]
gi|298593220|gb|EFI53420.1| pseudouridine synthase [Afipia sp. 1NLS2]
Length = 244
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 86/173 (49%), Gaps = 28/173 (16%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
+ YWA+V G P ++G I PLG++ G + + +
Sbjct: 93 IGKT--------------YWAVVEGGPAENQGEIDIPLGRLDETRGWWQK----PDPNGL 134
Query: 124 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+Q +R+ V+ G TWL L P+TGR HQLRVHCA +G PIVGD YG
Sbjct: 135 PSQ---SRWSVMG-RGDGLTWLALEPITGRTHQLRVHCA-AMGFPIVGDNIYG 182
>gi|288962105|ref|YP_003452400.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288914371|dbj|BAI75856.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 257
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 22/155 (14%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 85
EPP+L HRLDRD++G L++GRT + +F +++ YWA+
Sbjct: 60 GEPPKLAHRLDRDTAGCLILGRTPWALKRFGQMFAAGH--------------VEKTYWAV 105
Query: 86 VVGTPRCSKGVISAPLGKVVVDNGKS----DRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
G P GVI PL K + S T++ + + Q AVT Y+V+ + G
Sbjct: 106 ADGVPEAGSGVIDLPLLKRIEPKSPSGAGRSSWTILPDP---AGQPAVTEYRVLGTAADG 162
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
WL+L P TGR HQ+RVHCA + G P+VG+ YG
Sbjct: 163 RCWLELRPRTGRTHQIRVHCAAI-GCPLVGEPFYG 196
>gi|398824983|ref|ZP_10583295.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
gi|398224350|gb|EJN10660.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
Length = 236
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 106/257 (41%), Gaps = 83/257 (32%)
Query: 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 73
D A C + PP L HRLD+D+SG LV+GR + + L +F+ +
Sbjct: 49 DSFGALC--FGLPRPPVLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGKIGKT------ 100
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVT 130
YW +V G P +G I PLG++ + G K D Q AVT
Sbjct: 101 --------YWTVVEGGPAEDEGTIDMPLGRLNAERGWWQKPDP----------EGQKAVT 142
Query: 131 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 190
++V+ G+TWL + P+TGR HQLRVH + G PI GD YG
Sbjct: 143 NWKVMG-RGDGFTWLAMEPVTGRTHQLRVHSSAT-GWPIFGDNIYG-------------- 186
Query: 191 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 250
FG +P+LHLH +E+ +P +S+
Sbjct: 187 ------------NGPRFG-----------EPKLHLHSREIVVP-ISR------------- 209
Query: 251 SKLETLKLVAPLPSHMQ 267
E +++VAP P HM
Sbjct: 210 -NKEPVRVVAPAPPHMH 225
>gi|354481119|ref|XP_003502750.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Cricetulus griseus]
gi|344255028|gb|EGW11132.1| RNA pseudouridylate synthase domain-containing protein 4
[Cricetulus griseus]
Length = 377
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 57/265 (21%)
Query: 1 MPVQGGIGIRRSIDELAATC---LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ T L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPTLAKMLRGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R +++ YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVEKKYWAITVRVPLPSAGVVDIPIVEKEVQGQQQHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ N + AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDNGKMVKVRASRNAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY SD ++ + +++P GL +
Sbjct: 275 LSFGLDCPILGDHKY-------------SDWNRLAPQKLPAGTLKKLGLHQTKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLS 245
LHLH +++ LP + +++ L+
Sbjct: 320 --LHLHARQLILPALGSRTEELLLA 342
>gi|197104733|ref|YP_002130110.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
gi|196478153|gb|ACG77681.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
Length = 325
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 89/176 (50%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG R ID L + + E PRLVHRLDRD+SG+LV+G+T +A L
Sbjct: 107 LAVQGGTKTTRHIDGLLSAW--GEGLERPRLVHRLDRDTSGVLVLGKTPGAAAKLAGA-- 162
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KR Q+ YWALV G P+ +GV+ PL K G DR +V D
Sbjct: 163 ------------FAKRRTQKIYWALVAGLPKPGQGVLELPLAK----KGVGDREMMVPAD 206
Query: 121 -QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ A+ A T + + + W+ L P TGR HQLR H +G PI+GD KY
Sbjct: 207 PKDPRAETAETEFVTLARAADKVAWMALWPHTGRTHQLRAHML-AMGHPILGDPKY 261
>gi|144898737|emb|CAM75601.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 226
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 23/162 (14%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
EL L + +S PRL HRLDRD+SG L++GR S L +F +
Sbjct: 39 ELYLDALKFGWSMAPRLAHRLDRDTSGCLLLGRHDKSIKRLGKMFMQGR----------- 87
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
+++ YW +V GTP G ISAP+ KV GK +++ + Q AVTR++V
Sbjct: 88 ---VEKAYWTVVHGTPPEDTGEISAPIHKV---TGKGGWRIIIDA----AGQPAVTRWRV 137
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G +W++ +PLTGR HQ+RVH LG P+ GD YG
Sbjct: 138 LG-RGDGLSWIECTPLTGRTHQIRVHMKH-LGCPVRGDVYYG 177
>gi|83858519|ref|ZP_00952041.1| ribosomal large subunit pseudouridine synthase C [Oceanicaulis sp.
HTCC2633]
gi|83853342|gb|EAP91194.1| ribosomal large subunit pseudouridine synthase C [Oceanicaulis sp.
HTCC2633]
Length = 325
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 116/275 (42%), Gaps = 72/275 (26%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + +D L D + PRLVHRLD+D+SG+LV+ +T SA L +F
Sbjct: 107 LAVQGGSKVTMHLDHLLQAFGKGD--QKPRLVHRLDKDTSGVLVVAKTAQSAKRLARLF- 163
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR-ITVVNN 119
+ R +++ YWA+ +G P G I + K + + DR + V
Sbjct: 164 -------------QTRDVKKTYWAICLGLPAPRAGEIKGFMKKSM----EGDRELMVGAR 206
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
AQHA+TRY V + +W+ L P TGR HQLRVH + +G I GD KY
Sbjct: 207 HGEEGAQHALTRYAVADNAGARASWVVLRPETGRTHQLRVHM-QAMGHSIYGDGKY---- 261
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
P LS+ +LHLH +++ +P Q
Sbjct: 262 --TCDYPDPEGLSR----------------------------KLHLHARKIEIPREGQ-- 289
Query: 240 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
+ L + A LP HM S+D L
Sbjct: 290 --------------KPLVIEADLPKHMADSFDALG 310
>gi|365900462|ref|ZP_09438334.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
gi|365418790|emb|CCE10876.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
Length = 257
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 114/280 (40%), Gaps = 89/280 (31%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLD+++SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRFGLPRPPVLAHRLDKETSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSD-------- 112
S + YWA+V G P +G I PLG+ + G K D
Sbjct: 93 ISKT--------------YWAVVEGGPTEDEGTIELPLGRRNAERGWWQKPDPEGQPAIT 138
Query: 113 ------RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 166
R + N Q S+ A T + TWL + P+TGR HQLRVH A +G
Sbjct: 139 KWRVLGRSSSRANVQADSSSSAATPSRPGGEVTQNLTWLAMEPVTGRTHQLRVHAA-AMG 197
Query: 167 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 226
PIVGD YG FG +PRLHLH
Sbjct: 198 WPIVGDNIYG--------------------------NGPRFG-----------EPRLHLH 220
Query: 227 CKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHM 266
+E+++P +S+ VQ++ AP+P+HM
Sbjct: 221 AREISIP-LSKNKPPVQVT--------------APVPAHM 245
>gi|72127019|ref|XP_792641.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Strongylocentrotus purpuratus]
gi|390368006|ref|XP_003731372.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Strongylocentrotus purpuratus]
Length = 414
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 39/196 (19%)
Query: 1 MPVQGGIGIRRSIDELAATCL------TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATV 54
+PV GG G++ SID L +E L+HRLD++++G++++ R + +A V
Sbjct: 165 LPVHGGPGMKHSIDSLLPQLAWTLNNKGGGNTEELHLIHRLDKETTGVMLLARNERTARV 224
Query: 55 LHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK---- 110
LH +FR KR + + Y + VG P +G++ P+ + +D GK
Sbjct: 225 LHEMFR--------------KRQIIKRYLVITVGIPSPKEGILDMPMIEKEID-GKHRMV 269
Query: 111 ---------SDRITVVNNDQIMSAQHAVTRYQVI--KPSCHGYTWLKLSPLTGRKHQLRV 159
D I + + + ++ A+TRY+V+ + +C ++L P TG KHQ+RV
Sbjct: 270 IKPDMADLYPDTIGMRSGRKSRDSKEAITRYKVLSERGNC---ALVQLEPETGVKHQIRV 326
Query: 160 HCAEVLGTPIVGDYKY 175
H A+ LG PI+GD+KY
Sbjct: 327 HLAQGLGCPILGDHKY 342
>gi|374572009|ref|ZP_09645105.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM471]
gi|374420330|gb|EHQ99862.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM471]
Length = 235
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 109/267 (40%), Gaps = 86/267 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLD+D+SG LV+GR + + L +F+
Sbjct: 41 KGGANLETSFD-----ALRFGLPRPPVLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGK 95
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YW +V G P +G I PLG++ + G K D
Sbjct: 96 IGKT--------------YWTIVEGGPTEEEGTIDMPLGRLNAERGWWQKPDP------- 134
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q A+T ++V+ G TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 135 ---EGQKAITNWKVMG-RGGGLTWLAMEPVTGRTHQLRVH-ASATGWPIFGDNIYG---- 185
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +P+LHLH +E+ +P +S+
Sbjct: 186 ----------------------NGPRFG-----------EPKLHLHSREIVVP-ISR--- 208
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQ 267
E +++VAP P HM
Sbjct: 209 -----------NKEPVRVVAPAPPHMH 224
>gi|117924690|ref|YP_865307.1| pseudouridine synthase [Magnetococcus marinus MC-1]
gi|117608446|gb|ABK43901.1| pseudouridine synthase [Magnetococcus marinus MC-1]
Length = 255
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV G G +++ L L + + P L HRLDRD+SG LV+GR + + L +F
Sbjct: 31 IPVHAGPGGGANLEALFGG-LRFGLPKAPALAHRLDRDTSGCLVLGRHAKALSKLGKLFS 89
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ +Q+ YWA+V G P ++G + PL K+ + VV+ +
Sbjct: 90 QGK--------------VQKTYWAVVQGGPPQAQGSMDFPLYKI--STAQQGWRMVVDPE 133
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q + ++T Y+V+ S ++WL+L+P TGR HQ+RVHCA V G PI GD +YG
Sbjct: 134 Q---GKSSLTLYRVLGRSAT-HSWLELTPKTGRTHQIRVHCAHV-GLPIEGDLQYG 184
>gi|157825473|ref|YP_001493193.1| ribosomal large subunit pseudouridine synthase C [Rickettsia akari
str. Hartford]
gi|157799431|gb|ABV74685.1| ribosomal large subunit pseudouridine synthase C [Rickettsia akari
str. Hartford]
Length = 303
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LIVKTYCAITYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+A+ A+T Y+++K + ++ +P+TGR HQLR+H +++LG PIVGD KYG +
Sbjct: 208 ---NAKLAITYYKLLKSLDNNLFLIEFTPVTGRMHQLRLH-SKLLGCPIVGDNKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHSNNMCLSEKIFGQEIKLEAKLPF 296
>gi|145518940|ref|XP_001445342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|31746352|emb|CAD97486.1| pseudouridine synthase [Paramecium tetraurelia]
gi|124412786|emb|CAK77945.1| unnamed protein product [Paramecium tetraurelia]
Length = 350
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 36/238 (15%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG +I E+ Y + ++HRLD+ +SG+L++ + + AT + +I +EK
Sbjct: 120 QGGANPNYNIPEILNL-----YFKNFYIIHRLDQLTSGLLIIAKNKDIATEISTIIQEKA 174
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
F K Y A+V G + KG+I PL + N + + T N +Q++
Sbjct: 175 FITKK-------------YIAVVQGQIKVQKGLIDRPL----LFNTNNQKQTCYNEEQLL 217
Query: 124 SAQH--AVTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
++ A T Y+VI+ + Y+ L L GRKHQ+R H ++VL TPI+ D KYG+Q
Sbjct: 218 EGKYLPARTSYEVIEEYQYQDEMYSILDLQIFEGRKHQIRAHLSQVLNTPILFDQKYGFQ 277
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTL--HFGLDLE-------SGSILEKQPRLHLHC 227
+ + S +D + ++ + +F +D+ +G+I++K +L +
Sbjct: 278 FTKTNRDLQTSIFGEDQGIMLQAKRIVFQNFPVDINESFYQNSNGTIIQKNGKLEIEA 335
>gi|332208640|ref|XP_003253415.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Nomascus leucogenys]
Length = 377
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 126/283 (44%), Gaps = 71/283 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEVQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
VD+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRVDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLP 263
LHLH +++ LP + S+ E L LV LP
Sbjct: 320 --LHLHARQLILPALG--------------SRKEELNLVCKLP 346
>gi|157964329|ref|YP_001499153.1| ribosomal large subunit pseudouridine synthase [Rickettsia
massiliae MTU5]
gi|157844105|gb|ABV84606.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
massiliae MTU5]
Length = 306
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 110 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 168 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITNIDSE 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+++ A+T Y+V+K + ++ +P+TGR HQLR+H A +LG PI+GD KYG +
Sbjct: 211 ---NSKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-ARLLGCPILGDDKYGNKEI 266
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 267 MPYSKYMFLHANNICLSEKIFGKEIKLEAKLPF 299
>gi|403386611|ref|ZP_10928668.1| RluA family pseudouridine synthase [Clostridium sp. JC122]
Length = 306
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 27/167 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + + R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGILVIAKNDNAHNRLAEQFKDHSIT--------------RTYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI AP+G+ V+ K + VV N +HAVT Y+VI+ GYT +K +
Sbjct: 177 VIKTDSGVIDAPIGRHPVERIK---MAVVKN-----GKHAVTHYEVIE-RFKGYTLVKCN 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 192
TGR HQ+RVH + + G P++GD YG++ + + + H DL
Sbjct: 228 LETGRTHQIRVHMSHI-GHPLLGDEVYGFKKQKFKLQGQALHAKDLG 273
>gi|260577148|ref|ZP_05845125.1| pseudouridine synthase, RluA family [Rhodobacter sp. SW2]
gi|259020622|gb|EEW23941.1| pseudouridine synthase, RluA family [Rhodobacter sp. SW2]
Length = 349
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 120/280 (42%), Gaps = 61/280 (21%)
Query: 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+P QGG G R +D L L + Y E P+LVHRLD+D+SG+L++ RT A L F
Sbjct: 109 LPSQGGSGQGDRHVDGLT-EALKFGYKERPKLVHRLDKDTSGVLILARTDRVARALSEAF 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVV 117
R + N ++I YWALV G P +G I L K G+ +++ +
Sbjct: 168 RHR----------NTRKI----YWALVAGVPHPRQGSIKYALMKAPGHGRGGEGEKMLCI 213
Query: 118 NNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ + A+ A T Y V+ +W+ L P+TGR HQLR H AE +G PI+
Sbjct: 214 HPAKTADYPDAKRAQTDYFVLWFLGSRLSWVALEPITGRTHQLRAHMAE-MGHPIL---- 268
Query: 175 YGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
D L G + G + + +LHLH + ++
Sbjct: 269 ------------------GDGKYGGGGADNLGDGWGAQVGGDISR--KLHLHARSLS--- 305
Query: 235 VSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
V I K ++ VA LP HM ++W +
Sbjct: 306 VEHPITKAMMT------------FVAQLPEHMAKTWKTFD 333
>gi|348573905|ref|XP_003472731.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Cavia porcellus]
Length = 345
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 53/247 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G+R I E + A L +EP L HRLD++++G++V+ + A +
Sbjct: 113 LPVHGGPGVRLCISEVLPILAKVLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQIQE 172
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR + + + YWA+ V P S GV+ P ++
Sbjct: 173 LFRTRQVA--------------KKYWAVTVRVPVPSAGVVDIP---------------II 203
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
+ +A+ AVT+YQV+ S ++L P+TG KHQLRVH + L P++GD+KY
Sbjct: 204 EKE---NARVAVTQYQVLS-STVSSALVELQPVTGIKHQLRVHLSFGLDCPVLGDHKYS- 258
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P +++P GL+ + LHLH +++TLP +
Sbjct: 259 ----AWNKLAP--------QKLPAGTLKRLGLEQSKARYIP----LHLHARQLTLPPLGF 302
Query: 238 AIQKVQL 244
+++QL
Sbjct: 303 RKEELQL 309
>gi|383481276|ref|YP_005390191.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
gi|378933615|gb|AFC72118.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
Length = 303
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIDK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A +LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-ARLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGKEIKLEAKLPF 296
>gi|194212968|ref|XP_001502415.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Equus caballus]
Length = 377
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 129/294 (43%), Gaps = 71/294 (24%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKILHGHKADPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR + + + YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRTRQVA--------------KKYWAITVRVPVPSAGVVDIPIIEKEVQGRQHHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
D+GK R+ + N + AVT+YQV+ + L+L P TG KHQLRVH
Sbjct: 221 SPSYRMDSGKMVRVRMRRNAHV-----AVTQYQVLSNTL-SSALLELQPATGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLQQSKARHIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LHLH +++ LP + S+ E L LV LP + RS + L
Sbjct: 320 --LHLHARQLILPALG--------------SRKEELNLVCRLPRYFVRSLNRLG 357
>gi|73749059|ref|YP_308298.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. CBDB1]
gi|73660775|emb|CAI83382.1| ribosomal large subunit pseudouridine synthase,RluD subfamily
[Dehalococcoides sp. CBDB1]
Length = 300
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 26/165 (15%)
Query: 24 DYSEP--PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
D+ +P P +VHRLD+D+SG+L++ + + + L + F+E+T ++++
Sbjct: 122 DFDDPLRPGIVHRLDKDTSGLLLVAKNRQALANLSAQFKERT--------------IRKY 167
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+V++ G
Sbjct: 168 YLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQG 218
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
Y+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 219 YSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|386399592|ref|ZP_10084370.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM1253]
gi|385740218|gb|EIG60414.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM1253]
Length = 233
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 109/267 (40%), Gaps = 86/267 (32%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLD+D+SG LV+GR + + L +F+
Sbjct: 39 KGGANLETSFD-----ALRFGLPRPPVLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGK 93
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YW +V G P +G I PLG++ + G K D
Sbjct: 94 IGKT--------------YWTIVEGGPTEDEGTIDMPLGRLNAERGWWQKPD-------- 131
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q A+T ++V+ G TWL + P+TGR HQLRVH + G PI GD YG
Sbjct: 132 --PEGQKAITNWKVMG-RGDGLTWLAMEPVTGRTHQLRVHSSAT-GWPIFGDNIYG---- 183
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
FG +P+LHLH +E+ +P +S+
Sbjct: 184 ----------------------NGPRFG-----------EPKLHLHSREIVVP-ISR--- 206
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQ 267
E +++VAP P HM
Sbjct: 207 -----------NKEPVRVVAPAPPHMH 222
>gi|379714128|ref|YP_005302466.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
massiliae str. AZT80]
gi|376334774|gb|AFB32006.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
massiliae str. AZT80]
Length = 303
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 115/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I S+D A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSVDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITNIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+++ A+T Y+V+K + ++ +P+TGR HQLR+H A +LG PI+GD KYG +
Sbjct: 208 ---NSKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-ARLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGKEIKLEAKLPF 296
>gi|452204042|ref|YP_007484175.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
gi|452111101|gb|AGG06833.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
Length = 300
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 26/165 (15%)
Query: 24 DYSEP--PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
D+ +P P +VHRLD+D+SG+L++ + + + L + F+E+T ++++
Sbjct: 122 DFDDPLRPGIVHRLDKDTSGLLLVAKNRQALANLSAQFKERT--------------VRKY 167
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+V++ G
Sbjct: 168 YLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQG 218
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
Y+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 219 YSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|239947789|ref|ZP_04699542.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922065|gb|EER22089.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 303
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 117/213 (54%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I+ SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH +F+
Sbjct: 107 LATQGGSKIKLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDVFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKRSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++KP + ++ +P+TGR HQLR+H +++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKLLKPLDNNLFLIEFTPVTGRMHQLRLH-SKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLYEKIFGKEIKLEAKLPF 296
>gi|147669825|ref|YP_001214643.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|289433036|ref|YP_003462909.1| pseudouridine synthase [Dehalococcoides sp. GT]
gi|146270773|gb|ABQ17765.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|288946756|gb|ADC74453.1| pseudouridine synthase, RluA family [Dehalococcoides sp. GT]
Length = 300
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 26/165 (15%)
Query: 24 DYSEP--PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
D+ +P P +VHRLD+D+SG+L++ + + + L + F+E+T ++++
Sbjct: 122 DFDDPLRPGIVHRLDKDTSGLLLVAKNRQALANLSAQFKERT--------------VRKY 167
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+V++ G
Sbjct: 168 YLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQG 218
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
Y+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 219 YSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|452205541|ref|YP_007485670.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
gi|452112597|gb|AGG08328.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
Length = 300
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 26/165 (15%)
Query: 24 DYSEP--PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
D+ +P P +VHRLD+D+SG+L++ + + + L + F+E+T ++++
Sbjct: 122 DFDDPLRPGIVHRLDKDTSGLLLVAKNRQALANLSAQFKERT--------------VRKY 167
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+V++ G
Sbjct: 168 YLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQG 218
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
Y+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 219 YSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|157828222|ref|YP_001494464.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165932925|ref|YP_001649714.1| hypothetical protein RrIowa_0413 [Rickettsia rickettsii str. Iowa]
gi|378721024|ref|YP_005285911.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Colombia]
gi|378722378|ref|YP_005287264.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Arizona]
gi|378723735|ref|YP_005288619.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hauke]
gi|379016712|ref|YP_005292947.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Brazil]
gi|379017524|ref|YP_005293759.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hino]
gi|379018851|ref|YP_005295085.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hlp#2]
gi|157800703|gb|ABV75956.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165908012|gb|ABY72308.1| hypothetical protein RrIowa_0413 [Rickettsia rickettsii str. Iowa]
gi|376325236|gb|AFB22476.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Brazil]
gi|376326048|gb|AFB23287.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Colombia]
gi|376327402|gb|AFB24640.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Arizona]
gi|376330090|gb|AFB27326.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hino]
gi|376331431|gb|AFB28665.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hlp#2]
gi|376332750|gb|AFB29983.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hauke]
Length = 303
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGTDF-KLVHRLDKKTSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKAI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H ++ K +EI E L F
Sbjct: 264 MPYSKYMFLHAHNICLSEKIFGQEIKLEAKLPF 296
>gi|115522347|ref|YP_779258.1| pseudouridine synthase [Rhodopseudomonas palustris BisA53]
gi|115516294|gb|ABJ04278.1| pseudouridine synthase [Rhodopseudomonas palustris BisA53]
Length = 278
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 98/261 (37%), Gaps = 88/261 (33%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 45 KGGANLESSFD-----ALCYGLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHGK 99
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG-------------- 109
S + YWA+V G P +G I P+G++ + G
Sbjct: 100 ISKT--------------YWAVVEGGPEQDQGTIDLPIGRLNAERGWWQKIDPEGLPSVT 145
Query: 110 ---------------KSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG--YTWLKLSPLTG 152
+ + V N + H ++ C TWL L PLTG
Sbjct: 146 NWTVLGRSFSPPPCGEGSGVGVPNGSLALGPPHPSPPHKGEGAGCASGQLTWLALEPLTG 205
Query: 153 RKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLE 212
R HQLRVHCA +G PI GD YG FG
Sbjct: 206 RTHQLRVHCA-AMGWPIFGDNIYG--------------------------NGPRFG---- 234
Query: 213 SGSILEKQPRLHLHCKEMTLP 233
+P+LHLH +E+ +P
Sbjct: 235 -------EPKLHLHAREIVIP 248
>gi|88608500|ref|YP_506438.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
gi|88600669|gb|ABD46137.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
Length = 305
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 99/189 (52%), Gaps = 33/189 (17%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
PVQ G GI SID A + +Y R+VHRLD+ ++G+L+ +T +A L +F
Sbjct: 109 FPVQSGYGITASIDN-AMKSINPEY----RVVHRLDKHTTGVLIFAKTLDAARELWRLF- 162
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R++++ Y A+V+G + KGV+ + KV+ K + + NN
Sbjct: 163 -------------SNRLVKKSYLAIVIGELKEKKGVVDCYINKVLF---KGEEVMQCNN- 205
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG---- 176
I + +HA+T++ VIK + ++L PLTGRKHQ+R A + G P++ D KYG
Sbjct: 206 -IGNGEHAITQFHVIK-KFKNTSLIELFPLTGRKHQIRSQMASI-GHPVLNDGKYGRRKA 262
Query: 177 ---WQTHRK 182
W ++K
Sbjct: 263 FLEWSVNKK 271
>gi|379712094|ref|YP_005300433.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
philipii str. 364D]
gi|376328739|gb|AFB25976.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
philipii str. 364D]
Length = 303
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGTDF-KLVHRLDKKTSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKAI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H ++ K +EI E L F
Sbjct: 264 MPYSKYMFLHAHNICLSEKIFGQEIKLETKLPF 296
>gi|407005750|gb|EKE21798.1| hypothetical protein ACD_7C00125G0001 [uncultured bacterium]
Length = 316
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 19/163 (11%)
Query: 22 TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
TY + P +VHRLD+++SGIL++ + S ++F+EKT + +
Sbjct: 133 TYSFQSRPGIVHRLDKETSGILIIAKNIKSFLEFKTMFKEKT--------------IAKK 178
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y A+ G P KG I PL + + T+ + A+T Y+VIK
Sbjct: 179 YLAISYGIPLERKGTIDKPLARTT----NYRKQTIAGKRTKTKIREALTNYEVIKDLGEN 234
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 184
++ +++SP TGR HQ+RVH + + G PIVGD Y + + K++
Sbjct: 235 FSLIEVSPQTGRTHQIRVHLSAI-GHPIVGDNLYRKKNYEKFE 276
>gi|383483684|ref|YP_005392597.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
parkeri str. Portsmouth]
gi|378936038|gb|AFC74538.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
parkeri str. Portsmouth]
Length = 303
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 108/194 (55%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH+ F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIAKNYLSSVKLHNAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>gi|15892267|ref|NP_359981.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
conorii str. Malish 7]
gi|20139551|sp|Q92IS6.1|RLUC_RICCN RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|15619407|gb|AAL02882.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
conorii str. Malish 7]
Length = 303
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 108/194 (55%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH+ F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIAKNYLSSVKLHNAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>gi|383768639|ref|YP_005447702.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
gi|381356760|dbj|BAL73590.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
Length = 233
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 105/256 (41%), Gaps = 81/256 (31%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
E + L + PP L HRLD+D+SG LV+GR + + L +F+ +
Sbjct: 45 EASFGALCFGLPRPPVLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGKIGKT------- 97
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTR 131
YW +V G P +G I PLG++ + G K D Q AVT
Sbjct: 98 -------YWTVVEGGPAEDEGTIDMPLGRLNAERGWWQKPDP----------DGQKAVTN 140
Query: 132 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 191
++V+ G TWL + P+TGR HQLRVH + G PI GD YG
Sbjct: 141 WKVMG-RGEGLTWLAMEPVTGRTHQLRVHSSAT-GWPIFGDNIYG--------------- 183
Query: 192 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 251
FG +P+LHLH +E+ +P +S+
Sbjct: 184 -----------NGPRFG-----------EPKLHLHSREIVVP-ISR-------------- 206
Query: 252 KLETLKLVAPLPSHMQ 267
E +++VAP P HM
Sbjct: 207 NKEPVRVVAPAPPHMH 222
>gi|157827593|ref|YP_001496657.1| ribosomal large subunit pseudouridine synthase [Rickettsia bellii
OSU 85-389]
gi|157802897|gb|ABV79620.1| Ribosomal large subunit pseudouridine synthase [Rickettsia bellii
OSU 85-389]
Length = 310
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPP--RLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+ QGG I S+D + L Y S+ +LVHRLD+++SG+L++ + S+ LH
Sbjct: 116 LATQGGSKINLSVD----SALKYLNSQGADFKLVHRLDKETSGLLLIAKNYVSSVKLHDA 171
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
F+EK ++++ Y A+ G P +G + + K G +IT +N
Sbjct: 172 FKEK--------------LVEKTYLAVTYGKPIKDQGEVKTNIEK---SKGSIPKITDIN 214
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-- 176
++ + + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI GD KYG
Sbjct: 215 DN---NGKLAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLH-AKLLGCPIFGDNKYGND 270
Query: 177 -WQTHRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 271 KLMPYSKYMFLHANNI 286
>gi|374319064|ref|YP_005065562.1| Ribosomal large subunit pseudouridine synthase [Rickettsia slovaca
13-B]
gi|383750988|ref|YP_005426089.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
slovaca str. D-CWPP]
gi|360041612|gb|AEV91994.1| Ribosomal large subunit pseudouridine synthase [Rickettsia slovaca
13-B]
gi|379774002|gb|AFD19358.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
slovaca str. D-CWPP]
Length = 303
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNHLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGQEIKLEAKLPF 296
>gi|383312295|ref|YP_005365096.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378930955|gb|AFC69464.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 303
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 108/194 (55%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SQGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>gi|15604128|ref|NP_220643.1| hypothetical protein RP258 [Rickettsia prowazekii str. Madrid E]
gi|383487099|ref|YP_005404779.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. GvV257]
gi|383487676|ref|YP_005405355.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Chernikova]
gi|383488522|ref|YP_005406200.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Katsinyian]
gi|383489364|ref|YP_005407041.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Dachau]
gi|383499500|ref|YP_005412861.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. BuV67-CWPP]
gi|383500339|ref|YP_005413699.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. RpGvF24]
gi|386082092|ref|YP_005998669.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
prowazekii str. Rp22]
gi|14423907|sp|Q9ZDR7.1|RLUC_RICPR RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|3860820|emb|CAA14720.1| unknown [Rickettsia prowazekii str. Madrid E]
gi|292571856|gb|ADE29771.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
prowazekii str. Rp22]
gi|380757464|gb|AFE52701.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. GvV257]
gi|380758036|gb|AFE53272.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. RpGvF24]
gi|380760555|gb|AFE49077.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Chernikova]
gi|380761401|gb|AFE49922.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Katsinyian]
gi|380762246|gb|AFE50766.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. BuV67-CWPP]
gi|380763087|gb|AFE51606.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Dachau]
Length = 303
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH+ F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHNAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + +GK R++ + N
Sbjct: 165 EK--------------LVIKKYFAITYGRPVKNVGTVKSNIGK------SKRRLSKIANI 204
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A+T Y+++K + ++ P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 205 DSDDGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>gi|397498348|ref|XP_003819946.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Pan paniscus]
Length = 377
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|114641168|ref|XP_508851.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Pan troglodytes]
gi|410227542|gb|JAA10990.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
gi|410249832|gb|JAA12883.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
gi|410290532|gb|JAA23866.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
Length = 377
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|221316663|ref|NP_116184.2| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Homo sapiens]
gi|74731354|sp|Q96CM3.1|RUSD4_HUMAN RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|15559540|gb|AAH14131.1| RNA pseudouridylate synthase domain containing 4 [Homo sapiens]
Length = 377
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|91205071|ref|YP_537426.1| ribosomal large subunit pseudouridine synthase [Rickettsia bellii
RML369-C]
gi|122425980|sp|Q1RJX7.1|RLUC_RICBR RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|91068615|gb|ABE04337.1| Ribosomal large subunit pseudouridine synthase [Rickettsia bellii
RML369-C]
Length = 301
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPP--RLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+ QGG I S+D + L Y S+ +LVHRLD+++SG+L++ + S+ LH
Sbjct: 107 LATQGGSKINLSVD----SALKYLNSQGADFKLVHRLDKETSGLLLIAKNYVSSVKLHDA 162
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
F+EK ++++ Y A+ G P +G + + K G +IT +N
Sbjct: 163 FKEK--------------LVEKTYLAVTYGKPIKDQGEVKTNIEK---SKGSIPKITDIN 205
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-- 176
++ + + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI GD KYG
Sbjct: 206 DN---NGKLAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLH-AKLLGCPIFGDNKYGND 261
Query: 177 -WQTHRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 262 KLMPYSKYMFLHANNI 277
>gi|119588079|gb|EAW67675.1| RNA pseudouridylate synthase domain containing 4, isoform CRA_a
[Homo sapiens]
gi|119588080|gb|EAW67676.1| RNA pseudouridylate synthase domain containing 4, isoform CRA_a
[Homo sapiens]
Length = 377
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|14042050|dbj|BAB55086.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|297269584|ref|XP_002799894.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Macaca mulatta]
Length = 346
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 119/266 (44%), Gaps = 68/266 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR R + + YWA+ V P S GV+ P +V+
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIP----IVEK--------- 207
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
AQ AVTRYQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 208 ------EAQVAVTRYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS- 259
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 260 ----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHAQQLILPALG- 302
Query: 238 AIQKVQLSSGCDVSKLETLKLVAPLP 263
S+ E L LV LP
Sbjct: 303 -------------SRKEDLNLVCKLP 315
>gi|238650483|ref|YP_002916335.1| hypothetical protein RPR_02200 [Rickettsia peacockii str. Rustic]
gi|238624581|gb|ACR47287.1| hypothetical protein RPR_02200 [Rickettsia peacockii str. Rustic]
Length = 303
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 114/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGTDF-KLVHRLDKKTSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI + L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGQEIKLDAKLPF 296
>gi|407783425|ref|ZP_11130626.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
gi|407202150|gb|EKE72145.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
Length = 222
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 82/156 (52%), Gaps = 23/156 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + +PP L HRLDRD+SG LV+GR + + L +F + +
Sbjct: 40 LRFGLPKPPSLAHRLDRDTSGCLVLGRHRKALAKLGRLFSSGG--------------IDK 85
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWA+V G P+ G I PL K+ N KS VV+ Q + T ++V+ S
Sbjct: 86 TYWAVVAGGPQEEAGHIDRPLSKL---NKKSGWKMVVDPQ----GQPSQTDFRVLGRS-E 137
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G WL+L PLTGR HQLR+HC+ +G PI+GD YG
Sbjct: 138 GICWLELKPLTGRTHQLRIHCSS-MGWPILGDPVYG 172
>gi|395846486|ref|XP_003795934.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Otolemur garnettii]
Length = 378
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 49/268 (18%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 116 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 175
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+FR + + + YWA+ V P S GV+ P+ K V + ++T+
Sbjct: 176 LFRTRQVA--------------KKYWAITVRVPVPSTGVVDIPIIEKEVQGQQQHHKMTL 221
Query: 117 -----VNNDQIMS------AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ A AVT+YQV+ S L+L P+TG KHQLRVH + L
Sbjct: 222 APSYRMDNGKMVKVRSNRHAHVAVTQYQVLS-STVSSALLELQPITGIKHQLRVHLSFGL 280
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
PI+GD+KY W + P LS + +++ GL + LHL
Sbjct: 281 DCPILGDHKYS-----DWNKLAPQKLSISTLKKL--------GLQQSKARHIP----LHL 323
Query: 226 HCKEMTLPNVSQAIQKVQLSSGCDVSKL 253
H +++ LP + QK +L+ C + +
Sbjct: 324 HARQLVLPALGP--QKEELNLVCRLPRF 349
>gi|229586508|ref|YP_002845009.1| Ribosomal large subunit pseudouridine synthase [Rickettsia africae
ESF-5]
gi|228021558|gb|ACP53266.1| Ribosomal large subunit pseudouridine synthase [Rickettsia africae
ESF-5]
Length = 303
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 107/194 (55%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTLKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>gi|156402477|ref|XP_001639617.1| predicted protein [Nematostella vectensis]
gi|156226746|gb|EDO47554.1| predicted protein [Nematostella vectensis]
Length = 330
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 136/296 (45%), Gaps = 61/296 (20%)
Query: 1 MPVQGGIGIRRSIDELAATCLTY-DYSEPPRLVHRLDR----------DSSGILVMGRTQ 49
+PV GG G+ S+ EL +Y P L HRLD+ D SG+L++ R +
Sbjct: 41 LPVHGGPGVVLSVAELLEEFAAIKNYQNKPELAHRLDKYGTDYTIMLIDCSGVLLLTRNK 100
Query: 50 TSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 109
T+A + +F + R++++ Y A+ VG PR +G IS P+G V G
Sbjct: 101 TAAQKIAEMF--------------QSRMVKKRYLAVSVGVPRYEEGTISIPVGYGRV--G 144
Query: 110 KSDRITVVNN------DQIMSA--QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 161
+RI + + +I A + A+T+++++ + + L++ P+TG K Q+RVH
Sbjct: 145 PWERIIIRQDLVGKTHKEITEAGFKQAITKFKILDENQSTCSLLEIEPITGHKQQIRVHL 204
Query: 162 AEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL---E 218
A+ L PI+GD+K+ + + Q P L + K G+D + G I
Sbjct: 205 ADALRCPILGDHKFS--SDKPQPQVIPLRLLQLLQISGVK------GVDGKKGRIRPWQR 256
Query: 219 KQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
Q LHLH ++ LP + +G D L + APLP + + LN
Sbjct: 257 GQIPLHLHSHQLVLP---------KYHTGSD------LVISAPLPKYYLDTLSRLN 297
>gi|338726497|ref|XP_003365339.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Equus caballus]
Length = 349
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 122/277 (44%), Gaps = 65/277 (23%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKILHGHKADPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR + + + YWA+ V P S GV+ P +
Sbjct: 175 LFRTRQVA--------------KKYWAITVRVPVPSAGVVDIP----------------I 204
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
++ +A AVT+YQV+ + L+L P TG KHQLRVH + L PI+GD+KY
Sbjct: 205 IEKEVRNAHVAVTQYQVLSNTL-SSALLELQPATGIKHQLRVHLSFGLDCPILGDHKYS- 262
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL + LHLH +++ LP +
Sbjct: 263 ----DWNRLAPQKLSVGTLKKL--------GLQQSKARHIP----LHLHARQLILPALG- 305
Query: 238 AIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
S+ E L LV LP + RS + L
Sbjct: 306 -------------SRKEELNLVCRLPRYFVRSLNRLG 329
>gi|402703865|ref|ZP_10851844.1| ribosomal large subunit pseudouridine synthase [Rickettsia
helvetica C9P9]
Length = 303
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 114/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKLLKSLENNLFLIEFMPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGKEIKLEAKLPF 296
>gi|329851361|ref|ZP_08266118.1| pseudouridine synthase, RluA family protein [Asticcacaulis
biprosthecum C19]
gi|328840207|gb|EGF89779.1| pseudouridine synthase, RluA family protein [Asticcacaulis
biprosthecum C19]
Length = 334
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG + +D L + + E PRLVHRLDRD+SG+L++G++ ++A L
Sbjct: 112 LAVQGGTKTKNHVDRLLSAW--GEGLERPRLVHRLDRDTSGVLLLGKSPSAAARLAGA-- 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KR + YWALVVG P+ +G I PL + G DR V D
Sbjct: 168 ------------FAKRRANKTYWALVVGNPKPEEGYIDTPL----IKKGFHDREIVQPAD 211
Query: 121 -QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ A+ A T Y I + W+ L P TGR HQLR H + +G I+GD KYG
Sbjct: 212 PKEPGAEPAETEYVTIGRAGPRVAWMGLRPHTGRTHQLRAHM-QAIGHSILGDPKYG 267
>gi|426371007|ref|XP_004052447.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Gorilla gorilla gorilla]
Length = 377
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKADPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRNRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLACPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|67459415|ref|YP_247039.1| ribosomal large subunit pseudouridine synthase [Rickettsia felis
URRWXCal2]
gi|75536169|sp|Q4UKQ3.1|RLUC_RICFE RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|67004948|gb|AAY61874.1| Ribosomal large subunit pseudouridine synthase [Rickettsia felis
URRWXCal2]
Length = 305
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSNVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT + ++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIYSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++K + ++ +P+TGR HQLR+H A++LG PIVGD KYG +
Sbjct: 208 ---NGKLAITYYKLLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPIVGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGKEINLEAKLPF 296
>gi|427430618|ref|ZP_18920380.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425878587|gb|EKV27301.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 235
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 22/163 (13%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
E+ L + P L HRLDRD+SG L++GR + L +F++
Sbjct: 39 EMFLDPLRFGLPRLPSLAHRLDRDTSGCLILGRHSKALRKLGKLFQQGR----------- 87
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
+++ YWA+V G P +GV+ A L K+ +G VV+ + Q AVT Y+V
Sbjct: 88 ---VEKTYWAVVDGAPPKEQGVLHAKLRKLTPKSGWK---MVVDEAE---GQPAVTEYRV 138
Query: 135 IKPSCHGY-TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ S G TWL+ P TGR HQ+RVHCA LG PIVGD YG
Sbjct: 139 LGRSDDGRRTWLECKPKTGRTHQIRVHCAH-LGCPIVGDAVYG 180
>gi|83312904|ref|YP_423168.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947745|dbj|BAE52609.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 229
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 22/162 (13%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
EL L + ++E P+L HRLDRD+SG L++GR + L +F E
Sbjct: 39 ELYLGALAFGWAEMPKLAHRLDRDTSGCLILGRHAKAIKRLGKMF--------------E 84
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
R +++ YW++ G+P G + APL KV G+ RI V + Q ++T + V
Sbjct: 85 HRRVEKVYWSVSHGSPAADSGTVDAPLLKVSA-RGQGWRIKVDP-----AGQPSITDWSV 138
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ S G +W++ P TGR HQ+R+H A+ LG P++GD YG
Sbjct: 139 LGRS-DGLSWIEWRPRTGRTHQIRIH-AQYLGCPLLGDAYYG 178
>gi|383501974|ref|YP_005415333.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
australis str. Cutlack]
gi|378932985|gb|AFC71490.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
australis str. Cutlack]
Length = 303
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 115/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + ++T ++++
Sbjct: 165 EK--------------LIVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKMTDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++K + ++ +P+TGR HQLR+H +++LG PIVGD KYG +
Sbjct: 208 ---NGRLAITYYKLLKSLDNNLFLIEFTPVTGRMHQLRLH-SKLLGCPIVGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +E+ E L F
Sbjct: 264 MPYSKYMFLHANNIYLSEKIFGQEVKLEAKLPF 296
>gi|167645618|ref|YP_001683281.1| pseudouridine synthase [Caulobacter sp. K31]
gi|167348048|gb|ABZ70783.1| pseudouridine synthase [Caulobacter sp. K31]
Length = 286
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG ++D+L D P RL+HRLDRD+SG+++ RT+ +AT L K
Sbjct: 73 QGGRIQAHTLDDLLWALARRDRPRP-RLIHRLDRDTSGVILTARTKPAATFLGKALMGKR 131
Query: 64 FSASKEDNDNEKRILQRWYWALVV-GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
F ++ YWA+V G P G I +PL + + G+ + V D
Sbjct: 132 F--------------RKTYWAIVTPGAPEPRGGQIDSPLRRESI--GREAYMRVCEADH- 174
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A+ A +RY+ + + G ++LSP TGR HQLRVH A + G PI GD +YG
Sbjct: 175 PDAETARSRYRTLA-ATEGAALVELSPDTGRMHQLRVHMASI-GRPIAGDSRYG 226
>gi|381167871|ref|ZP_09877076.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380682947|emb|CCG41888.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 234
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 25/172 (14%)
Query: 11 RSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSAS 67
R+ DE L L + P L HRLDRD+SG LV+GR + + L IF A
Sbjct: 32 RAGDEHLGLYLDALRFGLPRSPELAHRLDRDTSGCLVLGRHRRALARLGEIF------AH 85
Query: 68 KEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 127
E N + YWA+VVG PR +G+I PL K G R+ V + SA
Sbjct: 86 GEAN--------KVYWAIVVGRPREEEGLIELPLKKREAKFGW--RMDVEERGGLPSA-- 133
Query: 128 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TR++++ +WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 134 --TRWRLLGGDGR-LSWLECQPLTGRTHQIRAHCAAI-GHPLVGDAIYGRGT 181
>gi|221316667|ref|NP_001138299.1| RNA pseudouridylate synthase domain-containing protein 4 isoform b
[Homo sapiens]
Length = 346
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 54/247 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR R + + YWA+ V P S GV+ P +V
Sbjct: 175 LFR--------------TRQVVKKYWAITVHVPMPSAGVVDIP---------------IV 205
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
+ AQ AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 206 EKE----AQVAVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS- 259
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 260 ----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGS 303
Query: 238 AIQKVQL 244
+++ L
Sbjct: 304 GKEELNL 310
>gi|392380039|ref|YP_004987197.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356882406|emb|CCD03418.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 236
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 23/149 (15%)
Query: 28 PPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87
PPRL HRLDRD++G LV+GR+ + L +F +++ YWA+
Sbjct: 59 PPRLAHRLDRDTAGCLVLGRSLWALKRLGDMFAAGH--------------VEKTYWAISE 104
Query: 88 GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKL 147
G P ++GVI PL K+++ + +V + + Q AVT+Y+V+ + +G WL+L
Sbjct: 105 GIPETAEGVIDFPLLKLLIPGAWN----IVTHP---TGQPAVTQYKVLG-TGNGRAWLEL 156
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQLRVH A + G P+VG+ YG
Sbjct: 157 RPRTGRTHQLRVHSAAI-GCPLVGEPYYG 184
>gi|350273318|ref|YP_004884631.1| ribosomal large subunit pseudouridine synthase [Rickettsia japonica
YH]
gi|348592531|dbj|BAK96492.1| ribosomal large subunit pseudouridine synthase [Rickettsia japonica
YH]
Length = 303
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIATNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H + + K +EI E L F
Sbjct: 264 MPYSKYMFLHANTICLSEKIFGQEIKLEAKLPF 296
>gi|326438031|gb|EGD83601.1| hypothetical protein PTSG_04209 [Salpingoeca sp. ATCC 50818]
Length = 293
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 21/158 (13%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
+D++ P +VHRLD+D++G+ V+ + +A +L+++F E +KR Y
Sbjct: 70 HDFA--PSIVHRLDKDTTGVTVIAKHAGAARILNNLFAEHQV---------DKR-----Y 113
Query: 83 WALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT-VVNNDQ---IMSAQHAVTRYQVIKPS 138
A+ +G P KG + P+G D G + IT ++ D+ + + A T Y+VI
Sbjct: 114 LAMTLGAPYPEKGRLDFPIG-TNKDTGATACITPTMSADERSALTNVVDAATNYRVIDNI 172
Query: 139 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
H + L P TGRKHQLRVHCA+ L PIVGD KYG
Sbjct: 173 DHHIALVDLKPHTGRKHQLRVHCAQALHCPIVGDNKYG 210
>gi|270308540|ref|YP_003330598.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Dehalococcoides sp. VS]
gi|270154432|gb|ACZ62270.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides sp. VS]
Length = 302
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 26/165 (15%)
Query: 24 DYSEP--PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
D+ +P P +VHRLD+D+SG+L++ + + + L + F+E+T ++++
Sbjct: 124 DFDDPLRPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKERT--------------VRKY 169
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y LV G ++G I APLG+ D +I VV+N +HA T Y+V++ G
Sbjct: 170 YLTLVKGELHPAEGFIEAPLGR---DPQNRQKIAVVSN-----GRHARTGYKVLR-YIQG 220
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
Y+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 221 YSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAIYGQKETWLKRQF 264
>gi|426371009|ref|XP_004052448.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Gorilla gorilla gorilla]
Length = 346
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 54/247 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKADPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR R + + YWA+ V P S GV+ P +V
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIP---------------IV 205
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
+ AQ AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 206 EKE----AQVAVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLACPILGDHKYS- 259
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 260 ----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGS 303
Query: 238 AIQKVQL 244
+++ L
Sbjct: 304 GKEELNL 310
>gi|260833883|ref|XP_002611941.1| hypothetical protein BRAFLDRAFT_126415 [Branchiostoma floridae]
gi|229297314|gb|EEN67950.1| hypothetical protein BRAFLDRAFT_126415 [Branchiostoma floridae]
Length = 335
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV GG G+ SI + ++ LVHRLD++++G++++ +T A LHS+FR
Sbjct: 87 VPVHGGPGMGVSIADSLPLLQQALKTDRLYLVHRLDKETTGVMLLAKTDDMARQLHSLFR 146
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKV--------------VV 106
R + + YW L +G P +GV+ P+ ++ V
Sbjct: 147 --------------LRKVIKKYWVLTMGVPSHEEGVVDIPIKELEVTAQGRPHHRMVCVP 192
Query: 107 DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 166
+ + ++ V + AQ A+T ++V+ SC ++ P TG KHQ+R H + LG
Sbjct: 193 EYSEETKLIVKKKRKSSDAQIAITNFRVLD-SCGSCALVECQPETGVKHQIRSHLSYGLG 251
Query: 167 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 226
PI+GD+KY S SK + + +P FG+ L +HLH
Sbjct: 252 CPILGDHKY-------------SHHSKLAPQRLPTGMLERFGIQQPKARYLP----MHLH 294
Query: 227 CKEMTLPNV 235
+++ LP
Sbjct: 295 ARQIVLPGF 303
>gi|254796911|ref|YP_003081748.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
gi|254590147|gb|ACT69509.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
Length = 305
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 26/176 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
PVQ G GI SID A + +Y R+VHRLD+ ++G+L+ +T +A L +F
Sbjct: 109 FPVQSGYGITTSIDN-AMKSINPEY----RVVHRLDKHTTGVLIFAKTLDAARELWRLF- 162
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R++++ Y A+V+G + KG + + KV+ + V+ +
Sbjct: 163 -------------SNRLVKKRYLAIVIGELKEKKGAVDCYINKVLFKGEE-----VMQCN 204
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
I + +HA+T++ VIK + + ++L PLTGRKHQ+R A + G P++ D KYG
Sbjct: 205 HIGNGEHAITQFHVIKKFKNA-SLIELFPLTGRKHQIRSQMASI-GHPVLNDGKYG 258
>gi|403262397|ref|XP_003923577.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Saimiri boliviensis boliviensis]
Length = 372
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 125/284 (44%), Gaps = 61/284 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRITV 116
+F+ R + + YWA+ V P S GV+ P + K + ++T+
Sbjct: 175 LFKT--------------RQVVKKYWAITVSVPMPSAGVVDIPIMEKEAQGQQQHHKMTL 220
Query: 117 -----------VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
V AQ AVT+Y+V+ S ++L P+TG KHQLRVH + L
Sbjct: 221 SPSYRMEDGKMVKMRSSRKAQVAVTQYRVLS-STLSSALMELHPITGIKHQLRVHLSFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
P++GD+KY W + P LS + +++ GL + LHL
Sbjct: 280 DCPVLGDHKYS-----DWNKLAPQKLSVGTLKKL--------GLKQSKARYIP----LHL 322
Query: 226 HCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRS 269
H +++ LP + S+ E L LV LP RS
Sbjct: 323 HARQLILPALG--------------SRKEELNLVCKLPHFFARS 352
>gi|341583575|ref|YP_004764066.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
heilongjiangensis 054]
gi|340807801|gb|AEK74389.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
heilongjiangensis 054]
Length = 303
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIATNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYG 259
>gi|338972397|ref|ZP_08627772.1| pseudouridine synthase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234561|gb|EGP09676.1| pseudouridine synthase [Bradyrhizobiaceae bacterium SG-6C]
Length = 255
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 105/254 (41%), Gaps = 61/254 (24%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
+ YWA+V G P S+G I PLG++ + G + + + +
Sbjct: 93 IDKT--------------YWAVVEGGPDASEGEIDIPLGRLDAERGWWQK---PDPNGLP 135
Query: 124 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 183
S + TWL + P+TGR HQLRVHC+ G PIVGD YG
Sbjct: 136 SKTVWRVLGRGTDAGGAALTWLAMEPITGRTHQLRVHCS-ASGWPIVGDNIYG------- 187
Query: 184 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 243
FG +P LHLH +E+ +P +S+ V+
Sbjct: 188 -------------------NGPRFG-----------EPSLHLHAREIVIP-LSKNKPPVR 216
Query: 244 LSSGCDVSKLETLK 257
+ + V E LK
Sbjct: 217 VVAPAPVHLHERLK 230
>gi|383483135|ref|YP_005392049.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
montanensis str. OSU 85-930]
gi|378935489|gb|AFC73990.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
montanensis str. OSU 85-930]
Length = 303
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH +
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDALK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGGVRSNIEK---SKGSTPQITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDSNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGKEIKLEAKLPF 296
>gi|441644247|ref|XP_004090574.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Nomascus leucogenys]
Length = 346
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 68/266 (25%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR R + + YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEV----------- 209
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
Q AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 210 --------QVAVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS- 259
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 260 ----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALG- 302
Query: 238 AIQKVQLSSGCDVSKLETLKLVAPLP 263
S+ E L LV LP
Sbjct: 303 -------------SRKEELNLVCKLP 315
>gi|407004108|gb|EKE20558.1| hypothetical protein ACD_7C00527G0001 [uncultured bacterium]
Length = 322
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 22 TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
TY + P +VHRLD+++SGIL++ + S ++F+EKT + +
Sbjct: 133 TYSFQLRPGIVHRLDKETSGILIIAKNIKSFLEFKTMFKEKT--------------IAKK 178
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y A+ G P G I PL + + T+ + A+T Y+VIK
Sbjct: 179 YLAISYGIPLERTGAIDKPLARTT----NYRKQTIAGKRTKTKIREALTNYEVIKDLGEN 234
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 184
++ +++SP TGR HQ+RVH + + G PIVGD Y + + K++
Sbjct: 235 FSLIEVSPQTGRTHQIRVHLSAI-GHPIVGDNLYRKKNYEKFE 276
>gi|110635475|ref|YP_675683.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
gi|110286459|gb|ABG64518.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
Length = 343
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 23/168 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDRD+SG++V+ +T + VL + F+ +D D L+R Y ALV G
Sbjct: 143 PGIVHRLDRDTSGVMVVAKTDQAHRVL-----AEAFADHGQDGD-----LERAYVALVWG 192
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDR-ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKL 147
PR G++ APLG+ SDR + V A+HAVT Y V++ G ++
Sbjct: 193 VPRRISGLVDAPLGR-----SASDRTLRAVVPQGRADARHAVTHYTVLERYGTGTPEEQI 247
Query: 148 SPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 189
+ L TGR HQ+RVH A + G P+VGD YG K + P+
Sbjct: 248 AALVECRLETGRTHQIRVHMAHI-GHPLVGDPAYGRAFRTKANRLPPA 294
>gi|359412538|ref|ZP_09205003.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357171422|gb|EHI99596.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 305
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + S L ++ + ++R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDESHNKLSEQLKDHS--------------MKREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ KG I PL + K DR+ + + + AVT YQVI+ +GYT +K
Sbjct: 177 RIKNDKGTIDKPLAR-----SKKDRLKI---GIVEGGKRAVTHYQVIE-RYNGYTLIKCV 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + G P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMASI-GYPLVGDPLYGFKKQR 259
>gi|88658198|ref|YP_507572.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
gi|88599655|gb|ABD45124.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
Length = 307
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 27/177 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRT-QTSATVLHSIF 59
+ VQGG ++ SI ++ E ++VHRLD+D+SGIL++ R + S ++H
Sbjct: 109 ISVQGGTKVKISISDIVDKIRD---GESMKIVHRLDKDTSGILMLARNARISRLIMHEF- 164
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ R +++ Y AL G P+ G I+ ++ N +S + VN+
Sbjct: 165 --------------KNRRVEKKYLALTQGIPKNDIGQINHS----IIKNKRSLSLDKVND 206
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ Q AVT + V+K +G L+L P+TGRKHQ+R+H + + G I+GD KYG
Sbjct: 207 SYL---QEAVTSFSVLKKLPYGIGLLELKPITGRKHQIRIHLSHI-GCSIIGDKKYG 259
>gi|389878892|ref|YP_006372457.1| ribosomal large subunit pseudouridine synthase D [Tistrella mobilis
KA081020-065]
gi|388529676|gb|AFK54873.1| ribosomal large subunit pseudouridine synthase D [Tistrella mobilis
KA081020-065]
Length = 289
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 23/161 (14%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
EL L + Y E P L HRLDRD+SG LV+GR + + L +F+
Sbjct: 39 ELYLDALRFGYKEQPSLAHRLDRDTSGCLVLGRNRRALARLGRMFQGGR----------- 87
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
+++ YWA+ G P +G + APL K G VV+ + Q AVT ++V
Sbjct: 88 ---VEKVYWAVTDGVPEAPEGRVDAPLAKRTPGRGWK---MVVDP----AGQAAVTDWRV 137
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ G W++ P TGR HQ+RVH A +G P+VGD Y
Sbjct: 138 LG-QAGGRAWIECRPRTGRTHQIRVHMAH-MGCPLVGDPVY 176
>gi|57233860|ref|YP_182086.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
ethenogenes 195]
gi|57224308|gb|AAW39365.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides ethenogenes 195]
Length = 300
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 26/173 (15%)
Query: 16 LAATCLTYDYSEP--PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 73
LA D+ +P P +VHRLD+D+SG+L++ + + + L + F+E+T
Sbjct: 114 LALEPEMEDFDDPLRPGIVHRLDKDTSGLLLVAKNREALANLSAQFKERT---------- 163
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
++++Y LV G ++G I APLG+ D +I VV+N + + V RY
Sbjct: 164 ----VRKYYLTLVQGELHPAEGFIEAPLGR---DPQNRQKIAVVSNGRPARTGYKVLRY- 215
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
GY+ L++ TGR HQ+RVH A +G P+ GD YG + +QF
Sbjct: 216 -----IQGYSLLEVKLETGRTHQIRVHFA-AIGHPVAGDAVYGQKETWLKRQF 262
>gi|414342374|ref|YP_006983895.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans H24]
gi|411027709|gb|AFW00964.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans H24]
Length = 243
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L HRLD D+SG L++ R +T+ + F + R +++ YW +V G
Sbjct: 73 PWLAHRLDADTSGCLLIARRKTALLEAQAAF--------------QNRQVRKLYWTIVEG 118
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
TP ++G ISAPL + N R+ V AVTR++V+ +G +WL+L
Sbjct: 119 TPAENEGEISAPL--LRQSNPSGWRMIVDPK-----GDAAVTRWRVLG-RANGRSWLELE 170
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ R+HCA LGTPIVGD YG
Sbjct: 171 LLTGRTHQARIHCAS-LGTPIVGDRVYG 197
>gi|157803478|ref|YP_001492027.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. McKiel]
gi|379022679|ref|YP_005299340.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. CA410]
gi|157784741|gb|ABV73242.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. McKiel]
gi|376323617|gb|AFB20858.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. CA410]
Length = 303
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 103/186 (55%), Gaps = 23/186 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ H F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSSIKFHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+K ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 DK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTRKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + A+T Y+++K + ++ +P+TG+ HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKLLKSLDNNLFLIEFTPITGKMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 181 RKWKQF 186
+ Q+
Sbjct: 264 MPYSQY 269
>gi|58037279|ref|NP_082316.1| RNA pseudouridylate synthase domain-containing protein 4 [Mus
musculus]
gi|81904256|sp|Q9CWX4.1|RUSD4_MOUSE RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|12845681|dbj|BAB26852.1| unnamed protein product [Mus musculus]
gi|38511726|gb|AAH61256.1| RNA pseudouridylate synthase domain containing 4 [Mus musculus]
gi|74140035|dbj|BAE33761.1| unnamed protein product [Mus musculus]
gi|148693444|gb|EDL25391.1| RNA pseudouridylate synthase domain containing 4 [Mus musculus]
Length = 377
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 126/289 (43%), Gaps = 71/289 (24%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R +++ YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ + + AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRLDNGKMVKVRASRDAHV-----AVTQYQVLS-SASSSALVELQPVTGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWTRLAPQKLSAGTLKKL--------GLQQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRS 269
LHLH +++ LP + S+ E L L LP RS
Sbjct: 320 --LHLHARQLILPALG--------------SRTEELLLTCKLPHFFARS 352
>gi|307109075|gb|EFN57314.1| hypothetical protein CHLNCDRAFT_12398, partial [Chlorella
variabilis]
Length = 198
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 26/187 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTY---DYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+ QGG G+ S+D + A + S RLVHRLDR ++G L++ R +A L +
Sbjct: 27 LACQGGSGVAHSVDSVMAAAFAHLPGPASHHLRLVHRLDRQTTGALLLARGPDAAAWLAA 86
Query: 58 IFREKTFSASKEDNDNEKRI--LQRWYWALVV-----GTPRC-SKGVISAPLGKVVVDNG 109
FRE + + + +Q+ YWA+V G R + G IS P+
Sbjct: 87 AFRESSGGSGGSGRGDSSSGASIQKQYWAVVALPEGGGAHRLPAAGAISLPV-------- 138
Query: 110 KSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 169
+AQ A+TRY+V+ G WL+L+P TGRKHQLR+HCA+ LG I
Sbjct: 139 ------PGGRGGAAAAQPALTRYRVLHRG-GGLAWLELAPATGRKHQLRLHCAQGLGAAI 191
Query: 170 VGDYKYG 176
+GD +YG
Sbjct: 192 LGDGRYG 198
>gi|350588629|ref|XP_003482691.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Sus scrofa]
Length = 376
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 62/290 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 114 LPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 173
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR + + + YWA+ V P S GV+ P+ + V
Sbjct: 174 LFRTRQVA--------------KKYWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTL 219
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK R+ N + AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 220 CPSYRMDNGKMVRVRTSRNAHL-----AVTQYQVLS-STLSSALLELQPVTGIKHQLRVH 273
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILE 218
+ L PI+GD+KY W + P LS ++ +P+ K H
Sbjct: 274 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGVLKKLGLPQSKARHIP---------- 318
Query: 219 KQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL-KLVAPLPSHMQ 267
LHLH +++ LP + +++ L + +L +L +PSH Q
Sbjct: 319 ----LHLHARQLILPALQSRKEELNLVCKPPRYFVHSLRRLGLKMPSHDQ 364
>gi|318043192|ref|NP_001187897.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
gi|308324268|gb|ADO29269.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
Length = 386
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 52/249 (20%)
Query: 5 GGIG--IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
GGIG I S+ LA + + L++D++G+L + RT+ +A +H++ R
Sbjct: 141 GGIGNSIAESLPVLAKIIDCTKGGSKLHVCYNLEKDTTGVLFLARTEETAERIHNLIR-- 198
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP----------------LGKVVV 106
+ EKR Y + VG P S+GVI P L +
Sbjct: 199 -------SHQAEKR-----YMVITVGVPVPSEGVIDIPIIEKEVMGDQHHFKMGLSPLYR 246
Query: 107 DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 166
+ D + V ++ AQ AVT Y+V+ S G + ++L P+TG KHQLRVH A L
Sbjct: 247 PTEEGDGLVRVRANR--QAQSAVTHYKVLD-SSSGCSLVELQPVTGVKHQLRVHMALALA 303
Query: 167 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 226
PI+GD+KY TH W + P +++P+ GL+ L LHLH
Sbjct: 304 CPILGDHKY---TH--WNKLAP--------QKLPEGVLRRLGLEQSKTRHLP----LHLH 346
Query: 227 CKEMTLPNV 235
+++TLP V
Sbjct: 347 VRQITLPGV 355
>gi|350276205|ref|NP_001231886.1| RNA pseudouridylate synthase domain containing 4 [Sus scrofa]
Length = 376
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 62/290 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 114 LPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 173
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR + + + YWA+ V P S GV+ P+ + V
Sbjct: 174 LFRTRQVA--------------KKYWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTL 219
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK R+ N + AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 220 CPSYRMDNGKMVRVRTSRNAHL-----AVTQYQVLS-STLSSALLELQPVTGIKHQLRVH 273
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILE 218
+ L PI+GD+KY W + P LS ++ +P+ K H
Sbjct: 274 LSFGLECPILGDHKYS-----DWNRLAPQKLSVGVLKKLGLPQSKARHIP---------- 318
Query: 219 KQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL-KLVAPLPSHMQ 267
LHLH +++ LP + +++ L + +L +L +PSH Q
Sbjct: 319 ----LHLHARQLILPALQSRKEELNLVCKPPRYFVHSLRRLGLKMPSHDQ 364
>gi|144897601|emb|CAM74465.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 230
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 104/246 (42%), Gaps = 74/246 (30%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P L HRLDRD+SG LV+GR + + L IF A E Q+
Sbjct: 46 LRFGLPRNPELAHRLDRDTSGCLVLGRHRKALARLGEIF------AGSE--------AQK 91
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWA+VVG P G+I L K+ +G +V +D+ Q AVT Y+V+ +
Sbjct: 92 TYWAVVVGKPPAESGIIDKRLKKLERRHG----WRMVVDDK---GQDAVTEYRVLGGNGR 144
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIP 200
+W++ P TGR HQ+RVH A + G PIVGD YG T
Sbjct: 145 -LSWIEAKPRTGRTHQIRVHLAAI-GCPIVGDSTYGRGT--------------------- 181
Query: 201 KEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVA 260
DL S P LHLH + +TLP K + A
Sbjct: 182 --------ADLVS-------PHLHLHARSITLPY---------------NPKKSPITAQA 211
Query: 261 PLPSHM 266
P+P+HM
Sbjct: 212 PVPAHM 217
>gi|46202662|ref|ZP_00208608.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 227
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 23/159 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + ++ P L HRLDR++SG LV+GRT+ + L +F K + +
Sbjct: 44 LRFGLAQSPELAHRLDRETSGCLVLGRTRKALAGLGDLF--------------AKGLADK 89
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWA+VVG PR +GVI L K G R+ V N +VT+++++
Sbjct: 90 TYWAVVVGKPREDQGVIDYALKKREKKFGW--RMEVDRN-----GLASVTQWRLLGTDGR 142
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 143 -LSWLECRPLTGRTHQIRAHCAAI-GHPLVGDAIYGRGT 179
>gi|410944386|ref|ZP_11376127.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
frateurii NBRC 101659]
Length = 257
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L HRLD D+SG L++ R +T+ + F + R +++ YW +V G
Sbjct: 87 PWLAHRLDADTSGCLLIARRKTALLEAQAAF--------------QSRQVRKLYWTVVEG 132
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
TP +G ISAPL + N R+ V + AVTR++V+ G +WL+L
Sbjct: 133 TPTDDEGEISAPL--LRQSNPSGWRMIVDPKGDV-----AVTRWRVLG-RAEGRSWLELE 184
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ R+HCA LGTPIVGD YG
Sbjct: 185 LLTGRTHQARIHCAS-LGTPIVGDRVYG 211
>gi|328768352|gb|EGF78399.1| hypothetical protein BATDEDRAFT_90882 [Batrachochytrium
dendrobatidis JAM81]
Length = 490
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 103/208 (49%), Gaps = 37/208 (17%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG I +D+L + L D S+ RLVHRLD+++SG +++ RT+ SA + ++FR+
Sbjct: 219 QGGSKIDMHLDKLI-SHLETDKSKTLRLVHRLDKNTSGAMIIARTKESAARVSAMFRQ-- 275
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVV---VDNGKS---DRITVV 117
E RI R Y AL+ T K+V V NG+ +R+ +V
Sbjct: 276 ----------EGRI-SRKYLALLTPTLLDHSNFKDGGQHKIVSGIVSNGREAPHERMDLV 324
Query: 118 ------------NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
N D + A VT Q S + + L P TGRKHQLR+HCA+ L
Sbjct: 325 EWHDGIPKQMSTNGDPVKKAVTKVTLLQ----SNPLTSLVCLEPTTGRKHQLRLHCADAL 380
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSK 193
G+ IVGDYKYG + +K H SD K
Sbjct: 381 GSFIVGDYKYGQGCLKNFKA-HVSDWKK 407
>gi|414169243|ref|ZP_11425080.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410886002|gb|EKS33815.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 255
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 83/180 (46%), Gaps = 37/180 (20%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L Y PP L HRLDRD+SG LV+GR + + L +F+
Sbjct: 38 KGGPNLEASFD-----ALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGK 92
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YW +V G P S+G I PLG++ + G K D + +
Sbjct: 93 IDKT--------------YWTVVEGGPDASEGEIDIPLGRLDAERGWWQKPDPNGLPSK- 137
Query: 121 QIMSAQHAVTRYQVIKPSCHG----YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
T ++V+ TWL + P+TGR HQLRVHC+ G PIVGD YG
Sbjct: 138 ---------TVWKVLGRGTDAGGAKLTWLAMEPITGRTHQLRVHCS-ASGWPIVGDNIYG 187
>gi|209965860|ref|YP_002298775.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209959326|gb|ACI99962.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 239
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 3 VQGGIGIRRSIDELAATC--LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
V GG G R D L L + PP L HRLDRD+SG LV+GR + L +F+
Sbjct: 28 VHGGPGSRHGADNLERYFEHLRFGLPRPPALAHRLDRDTSGCLVLGRHPKALRKLGLLFQ 87
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ + YWA+V G P G I L K + + +
Sbjct: 88 DGRIGKT--------------YWAVVRGGPEGDAGTIDKALLKRT--DARRGWKMIALPP 131
Query: 121 QIMSAQHAVTRYQVIK----PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
AQ AVT ++V+ P WL+L P TGR HQ+R HCA +G P++GD YG
Sbjct: 132 GTPEAQEAVTDWRVMGRGSLPKIGDLAWLELHPRTGRTHQIRAHCA-AMGCPVLGDPVYG 190
Query: 177 WQTHRKWKQFHPSDLS 192
+ + H +S
Sbjct: 191 GRYEAEPLHLHSRAIS 206
>gi|381168928|ref|ZP_09878109.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380681944|emb|CCG42929.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 231
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 22/162 (13%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
EL L + +S+ PRL HRLDRD+SG L++GR + L +F E
Sbjct: 39 ELYLDPLRFGWSQNPRLAHRLDRDTSGCLILGRHDKALKRLGRMF--------------E 84
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
+++ YW++ +G P ++G + APL K V + GK R+ V + Q AVT + V
Sbjct: 85 THRIEKVYWSVCIGAPPQARGRVEAPLLK-VSEPGKGWRVRVDP-----AGQRAVTDWVV 138
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G W++ P TGR HQ+R H A LG P++GD +G
Sbjct: 139 LG-QADGLCWVEWRPRTGRTHQIRAHAAH-LGCPLLGDAVHG 178
>gi|182680419|ref|YP_001834565.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636302|gb|ACB97076.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 234
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + D+L + P L HRLDRD+SG LV+GR + L +F++
Sbjct: 33 KGGDNLEAFFDDL-----RFGLPRRPALAHRLDRDTSGCLVLGRHHKALEKLGLLFKQGK 87
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
+ + YW++V+G P +G+I PLG+ + G ++ + +
Sbjct: 88 IAKT--------------YWSVVLGGPTEDEGLIDLPLGRRDAERGWWMKV----DPEGA 129
Query: 124 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 183
AQ TR+ V+ S + L L PLTGR HQLRVHCA G PI+GD YG H+
Sbjct: 130 PAQ---TRWTVLARSAD-HCLLALKPLTGRTHQLRVHCA-AQGFPILGDPVYGPADHKGG 184
Query: 184 KQFH 187
+ H
Sbjct: 185 ETLH 188
>gi|355717323|gb|AES05895.1| RNA pseudouridylate synthase domain containing 4 [Mustela putorius
furo]
Length = 373
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 49/263 (18%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG GIR I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 118 LPVHGGPGIRLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 177
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRITV 116
+FR + + + YW + V P GV+ P + K V + ++T+
Sbjct: 178 LFRTRQVA--------------KKYWTITVRVPVPPAGVVDIPVIEKEVQGQQQHYKMTL 223
Query: 117 -----------VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
V A AVT+YQV+ S ++L P+TG KHQLRVH + L
Sbjct: 224 SPGFRMEDGKMVRARSNRKAHTAVTQYQVLS-STLSAALVELQPITGVKHQLRVHLSFGL 282
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
PI+GD+KY W + P LS + +++ GL + LHL
Sbjct: 283 DCPILGDHKYS-----DWNKLAPQKLSLGTLKKL--------GLHQAKARHIP----LHL 325
Query: 226 HCKEMTLPNVSQAIQKVQLSSGC 248
H +++ LP + +K +LS C
Sbjct: 326 HARQLILPALGS--RKEELSLVC 346
>gi|296216599|ref|XP_002754668.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Callithrix jacchus]
Length = 397
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGRKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFR--------------IRQVVKKYWAITVRVPIPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+++GK ++ N Q+ AVT+Y+V+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMEDGKMVKMRSSRNAQV-----AVTQYRVLS-STLSSALMELHPITGVKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L P++GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPVLGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSRKEELNL 341
>gi|209963797|ref|YP_002296712.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957263|gb|ACI97899.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 242
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 23/156 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
+ ++ EPPRL HRLD+D+SG LV+ R A L +F +
Sbjct: 47 IAFEREEPPRLAHRLDKDTSGCLVLARDAEVAARLGRLFLHGHVGKT------------- 93
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWA+V+G PR G I PL KV + VV+ D + A+T ++++
Sbjct: 94 -YWAVVLGRPRGDAGRIDLPLLKVHIPGCSK---VVVDPD----GKPALTDWRLLATDGR 145
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+WL+L+P TGR HQLR HCA G PI+GD YG
Sbjct: 146 -LSWLELTPRTGRMHQLRAHCA-CSGFPILGDPIYG 179
>gi|260589549|ref|ZP_05855462.1| ribosomal large subunit pseudouridine synthase D [Blautia hansenii
DSM 20583]
gi|331082975|ref|ZP_08332095.1| hypothetical protein HMPREF0992_01019 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540117|gb|EEX20686.1| ribosomal large subunit pseudouridine synthase D [Blautia hansenii
DSM 20583]
gi|330399970|gb|EGG79628.1| hypothetical protein HMPREF0992_01019 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 294
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 23/147 (15%)
Query: 30 RLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGT 89
R ++RLDRD++G+L++ + SA++L N + R + R Y A+V G
Sbjct: 130 RCINRLDRDTTGLLIIAKNALSASIL--------------SNQMKAREIHRTYLAVVFGI 175
Query: 90 PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSP 149
P+ I+AP+ + +N +R ++ + AVT YQV+ S Y+ LKLS
Sbjct: 176 PKKEADTITAPIAR--KENSAIERCV-----DFINGERAVTNYQVVA-SKEDYSLLKLSL 227
Query: 150 LTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A+ +G P++GDY Y
Sbjct: 228 ETGRTHQIRVH-AKYMGNPLLGDYLYN 253
>gi|385799642|ref|YP_005836046.1| ribosomal large subunit pseudouridine synthase D [Halanaerobium
praevalens DSM 2228]
gi|309389006|gb|ADO76886.1| ribosomal large subunit pseudouridine synthase D [Halanaerobium
praevalens DSM 2228]
Length = 303
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 23/152 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ + S L F+ +T + ++Y+AL+ G
Sbjct: 130 PGIVHRLDKDTSGLLIVAKNDKSHKSLAKQFKART--------------VDKYYFALIEG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
KG I AP+G+ D ++ V + +++A++R+++I+ H YT +++
Sbjct: 176 NLAYKKGKIEAPIGR---DPNHRKKMAV----RKRHSKNAISRFKIIEEFNH-YTLVEVK 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
TGR HQ+RVH + LG PIVGD KYG + +
Sbjct: 228 IETGRTHQIRVHFS-YLGHPIVGDQKYGSKNN 258
>gi|348507843|ref|XP_003441465.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Oreochromis niloticus]
Length = 387
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 50/220 (22%)
Query: 35 LDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSK 94
L++DS+G L++ R R++ N N K ++R YW + VG P S+
Sbjct: 173 LEKDSTGTLLLAR------------RDEVVEHVLALNRNNK--VERKYWVITVGVPVPSE 218
Query: 95 GVISAPLGKVVVD----------------NGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 138
G+I P+ + V N + D +T V + + A AVT+Y+V+ S
Sbjct: 219 GLIDIPIIEREVTGPQPHYKMALSPLYRLNNEGDGVTKVRSHR--QAHPAVTKYRVLD-S 275
Query: 139 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 198
G + ++L P TG KHQLRVH A LG PI+GD+KY W + P ++
Sbjct: 276 SSGCSLVELQPFTGVKHQLRVHMAFALGCPILGDHKYSH-----WSKLAP--------QK 322
Query: 199 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
+P+ G++ L LHLH +++TLP SQA
Sbjct: 323 LPERVLGKLGIEQSKVRHLP----LHLHARQLTLPGSSQA 358
>gi|170759197|ref|YP_001786899.1| RluA family pseudouridine synthase [Clostridium botulinum A3 str.
Loch Maree]
gi|169406186|gb|ACA54597.1| pseudouridine synthase, RluA family [Clostridium botulinum A3 str.
Loch Maree]
Length = 305
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + +HAVT Y+VIK +T ++
Sbjct: 177 IIKNEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIK-RFKNHTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|301782173|ref|XP_002926501.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Ailuropoda melanoleuca]
gi|281338700|gb|EFB14284.1| hypothetical protein PANDA_016152 [Ailuropoda melanoleuca]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 47/259 (18%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRITV 116
+FR + + + YWA+ V P GV+ P + K V + ++T+
Sbjct: 175 LFRTRQVA--------------KKYWAVTVRVPVPPAGVVDIPVIEKEVQGQQQHYKMTL 220
Query: 117 -----------VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
V + +A AVT+YQV+ S ++L P+TG KHQLRVH + L
Sbjct: 221 SPSYRMEDGKMVRTRRDRNAHTAVTQYQVLS-STLSSALVELQPITGVKHQLRVHLSFGL 279
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
PI+GD+KY W + P LS + +++ GL + LHL
Sbjct: 280 DCPILGDHKYS-----DWNKLAPQKLSLGTLKKL--------GLQQAKARHIP----LHL 322
Query: 226 HCKEMTLPNVSQAIQKVQL 244
H +++ LP + +++ L
Sbjct: 323 HARQLILPALGSRKEELNL 341
>gi|304319748|ref|YP_003853391.1| Ribosomal large subunit pseudouridine synthase C [Parvularcula
bermudensis HTCC2503]
gi|303298651|gb|ADM08250.1| Ribosomal large subunit pseudouridine synthase C [Parvularcula
bermudensis HTCC2503]
Length = 324
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 58/207 (28%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
PRLVHRLDRD+ G+L++ +++ A L F++ + YWA+ G
Sbjct: 139 PRLVHRLDRDTGGVLLLAKSRAVAATLSLAFQQHRIGKT--------------YWAITKG 184
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I + K G+ R + +Q Q A+T YQ ++ + +L L
Sbjct: 185 VPHPLFGRIDMRIEKA----GEPGREKMRGTEQ---GQSALTDYQTVETAGQKAAFLALR 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
P TGR HQ+RVH + + GTPIVGD KYG
Sbjct: 238 PHTGRTHQIRVHLSAI-GTPIVGDRKYGG------------------------------- 265
Query: 209 LDLESGSILEKQP-RLHLHCKEMTLPN 234
+G++LE P ++HL C++M +P
Sbjct: 266 ----AGAVLEGLPNQMHLFCRQMHVPR 288
>gi|90413248|ref|ZP_01221243.1| putative 23S rRNA ribosomal pseudouridinesynthase [Photobacterium
profundum 3TCK]
gi|90325800|gb|EAS42258.1| putative 23S rRNA ribosomal pseudouridinesynthase [Photobacterium
profundum 3TCK]
Length = 314
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A Y E LVHR+DRD+SGIL++ + +++ L FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARYLE---LVHRIDRDTSGILLVAKKRSALRKLQEQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S ++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKASCKKVTAPLLKNEVNS-----IVRVNQN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ H T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 211 ---GKASDTRFKVLERFEHA-TLVQASPVTGRTHQIRVHC-QYEGHPIAWDDRYG 260
>gi|150016471|ref|YP_001308725.1| RluA family pseudouridine synthase [Clostridium beijerinckii NCIMB
8052]
gi|149902936|gb|ABR33769.1| pseudouridine synthase, RluA family [Clostridium beijerinckii NCIMB
8052]
Length = 305
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + L ++ + ++R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDEAHNKLSDQLKDHS--------------MKREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ KG+I PL + K DR+ + + + AVT Y+V++ +GYT +K
Sbjct: 177 RLKNDKGIIDKPLAR-----NKRDRLKI---GIVEGGKRAVTHYEVLE-RFNGYTLIKCI 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + G P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMASI-GFPLVGDPLYGFKKQR 259
>gi|254420499|ref|ZP_05034223.1| RNA pseudouridine synthase family [Brevundimonas sp. BAL3]
gi|196186676|gb|EDX81652.1| RNA pseudouridine synthase family [Brevundimonas sp. BAL3]
Length = 241
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 19/148 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLDRD+SG+++ +T+ +A L + + F ++ Y AL+
Sbjct: 64 PELVHRLDRDTSGVILAAKTKPAAGFLGKALQMRRF--------------RKQYLALLSA 109
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P + G I APL + + G+ + VV D AQ + +RY+ + + G ++L
Sbjct: 110 APEPASGTIDAPLRREEI--GRESYMRVVAFDAP-GAQGSQSRYRTLAANDQGAV-VELE 165
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
PLTGR HQLRVH A LG P++GD +YG
Sbjct: 166 PLTGRMHQLRVHMAH-LGRPLIGDVRYG 192
>gi|114562667|ref|YP_750180.1| RluA family pseudouridine synthase [Shewanella frigidimarina NCIMB
400]
gi|114333960|gb|ABI71342.1| ribosomal large subunit pseudouridine synthase C [Shewanella
frigidimarina NCIMB 400]
Length = 318
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R KT +Q+ Y ALV G
Sbjct: 141 LVHRLDKDTSGVLLVAKKRSALKHLHEQLRSKT--------------MQKDYLALVRGEW 186
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ S V+ APL K+ + +G +RI VN + + + TRY++++ G T +K SP+
Sbjct: 187 QASDKVVKAPLLKITLKSG--ERIVRVNKE----GKESETRYKIMQ-RYQGCTLVKASPV 239
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G I D KY Q
Sbjct: 240 TGRTHQIRVHC-QYAGHAIACDDKYSEQ 266
>gi|218530900|ref|YP_002421716.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218523203|gb|ACK83788.1| pseudouridine synthase [Methylobacterium extorquens CM4]
Length = 239
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 77/157 (49%), Gaps = 22/157 (14%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG LV+GR + L+ +F + +
Sbjct: 54 ALRFGLPRRPEAAHRLDRDTSGCLVLGRHAKALARLNRLFADGRVDKT------------ 101
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
YWALV G P +G I PL K D R + D + ++T Y+V+ S
Sbjct: 102 --YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLGQS- 152
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G +WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 153 EGLSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|440908886|gb|ELR58863.1| RNA pseudouridylate synthase domain-containing protein 4 [Bos
grunniens mutus]
Length = 377
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYCMDDGKMVRVRSSRN-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 275 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 320 --LHLHACQLTLPALQP--QKEELTLLC 343
>gi|291239041|ref|XP_002739435.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 467
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 44/244 (18%)
Query: 1 MPVQGGIGIRRSI-DELAATCLTYDYSEPP-RLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+P GG I ++ D L D S P LVHRLD++++G++++ +++ A L+++
Sbjct: 227 LPSHGGPTITNNVNDTLTILAKLIDKSLPKLYLVHRLDKETTGVMLLAKSEIIAKQLNAL 286
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL--GKVVVDNGKSDR--I 114
FR K+++ + YW L VG P S+GV+ P+ G+V N R
Sbjct: 287 FR--------------KKMVIKRYWVLTVGVPEPSEGVVDIPMEEGEVAGKNRMLLRPDY 332
Query: 115 TVVNNDQIMSAQ----HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 170
+V + I S+ A+T ++V+ S ++L P TG KHQ+R H A LG PI+
Sbjct: 333 GLVYKNLIKSSSGKGATALTNFKVLA-SEGNCALVELQPETGIKHQIRCHLASGLGCPIL 391
Query: 171 GDYKYGWQTHRKWK-QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKE 229
GD+KY H K Q P D+ + N K +T+ +HLH K+
Sbjct: 392 GDHKYSH--HDKLAPQKLPGDMLQRLNIRQAKVRTV----------------PMHLHAKQ 433
Query: 230 MTLP 233
+ +P
Sbjct: 434 LIIP 437
>gi|307109077|gb|EFN57316.1| hypothetical protein CHLNCDRAFT_143940 [Chlorella variabilis]
Length = 330
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 29/184 (15%)
Query: 4 QGGIGIRRSIDELAATCLTY---DYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
QGG G+ S+D + A + S RLVHRLDR ++G L++ R +A L + F+
Sbjct: 125 QGGSGVSHSVDSVMAAAFAHLPGPASHHLRLVHRLDRQTTGALLLARGPDAAAWLAAAFQ 184
Query: 61 EKTFSASKEDNDNEKR---ILQRWYWALVVGTPRC-------SKGVISAPLGKVVVDNGK 110
E + S + I+++ YWA VV P + G IS P V G+
Sbjct: 185 ESSGGGSSGGGRGDSSSGAIIRKQYWA-VVALPEGGAAHRLPAAGAISLP-----VPGGR 238
Query: 111 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 170
+ +AQ A TRY+V+ G WL+L+P TGRKHQLR+HCA+ LG I+
Sbjct: 239 GG---------VAAAQPAPTRYRVLH-RGGGLAWLELAPATGRKHQLRLHCAQGLGAAIL 288
Query: 171 GDYK 174
GD +
Sbjct: 289 GDGR 292
>gi|241574172|ref|XP_002403064.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
gi|215502139|gb|EEC11633.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
Length = 443
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 45/214 (21%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
VHRLDRD +G+L++ RTQ A +L+S+F +K + + Y A+ G P
Sbjct: 237 VHRLDRDVTGVLLLARTQRMADMLNSLF--------------QKHQVSKTYLAITAGVPD 282
Query: 92 CSKGVISAPLGKVVVDNGKSDRITVVNND----------QIMSAQHAVTRYQVIKPSCHG 141
+GVI PL + V+ K V+N + + AVT Y+V+ SC
Sbjct: 283 HLEGVIDMPLAEGEVEGAKR---MVLNPKLDPEFQRLVPKFRKSFAAVTTYRVLA-SCGR 338
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 201
+L+L P TG KHQLR H L PI+GD+KY S L + + +++P
Sbjct: 339 AGYLELRPTTGVKHQLRAHLGLGLRCPILGDHKY-------------SHLRRLAPQKLPG 385
Query: 202 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
+ G+ S + P LHLH + + +P +
Sbjct: 386 DMLDRLGI---RQSKVRDAP-LHLHARAVVVPEI 415
>gi|206889653|ref|YP_002248865.1| pseudouridylate synthase, 23S RNA-specific [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741591|gb|ACI20648.1| pseudouridylate synthase, 23S RNA-specific [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 315
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 24/152 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ + L F+ KR +++ Y ALV G
Sbjct: 133 PGIVHRLDKDTSGVMVVALDDETYYKLVEAFK--------------KREIKKEYLALVYG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
R S G I+ P+G+ + D K + + A+ A+T ++VIK + YT+LK+
Sbjct: 179 QLRGS-GKITTPVGRAIYDRKKM-------SIKSKKAKEAITEWEVIK-NFKNYTFLKVK 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
LTGR HQ+RVH + + G P++GD YG +T+
Sbjct: 230 ILTGRTHQIRVHFSSI-GHPVIGDKTYGRKTY 260
>gi|426252346|ref|XP_004019875.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Ovis aries]
Length = 401
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 127/290 (43%), Gaps = 64/290 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 131 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 190
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL---------------- 101
+FR + + + YWA+ V P GV+ P+
Sbjct: 191 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIIEKEAQGQQHHHKMTL 236
Query: 102 -GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
VD+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 237 SPSYRVDDGKMVRVRSSRN-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVH 290
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L P++GD+KY W + P LS +++ GL L
Sbjct: 291 LSFGLDCPVLGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 335
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCD-----VSKLETLKLVAPLPSH 265
LHLH ++TLP + QK +L+ C V+ L L L P H
Sbjct: 336 --LHLHACQLTLPALQP--QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 381
>gi|23012044|ref|ZP_00052228.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 238
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 25/174 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P HRLDRD+SG LV+GR + L+ +F + S
Sbjct: 55 LRFGLPRRPEAAHRLDRDTSGCLVLGRHAKALARLNRLFADSKVDKS------------- 101
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWALV G P ++G I PL + D R + D + ++T Y+V+
Sbjct: 102 -YWALVEGGPSETEGRIDLPLARRSDDP----RSWWMKTDP--AGAPSLTLYRVLG-RTE 153
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK--QFHPSDLS 192
G +WL+L P+TGR HQLRVHCA +G PI GD YG Q R+ Q H LS
Sbjct: 154 GLSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG-QADRQGPGLQLHARSLS 205
>gi|297690649|ref|XP_002822725.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Pongo abelii]
Length = 377
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>gi|452963354|gb|EME68427.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
sp. SO-1]
Length = 228
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 22/162 (13%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
EL L++ ++E P+L HRLDRD+SG L++GR + L +F E
Sbjct: 39 ELYLPGLSFGWAEVPKLAHRLDRDTSGCLILGRHAKAIKRLGKMF--------------E 84
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
+ + + YW++ G P G + APL KV G+ RI V + Q ++T + V
Sbjct: 85 QHRVDKVYWSVCHGAPEADSGTVDAPLLKVSA-RGQGWRIKVDP-----AGQPSMTDWSV 138
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G +W++ P TGR HQ+R+H A+ LG P++GD YG
Sbjct: 139 LG-RGGGLSWIEWRPRTGRTHQIRIH-AKHLGCPLLGDAYYG 178
>gi|294085986|ref|YP_003552746.1| pseudouridine synthase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665561|gb|ADE40662.1| pseudouridine synthase, RluA family [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 335
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 57/234 (24%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G ++ +D + A L + RLVHR+D+D+SG+L++ +T SA L F
Sbjct: 126 LAVQGGTGTKQHVDGMLA-ALAARGGDRLRLVHRIDKDTSGVLLLAKTLQSARSLTDAF- 183
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K +++ Y AL +G P +G + + K+ GKS V ++D
Sbjct: 184 -------------HKHAIEKTYLALCMGLP-PEEGAVKQAISKL---PGKSGERMVADDD 226
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q A T ++ + + T + L PLTGR HQLR+H A ++G I GD KYG
Sbjct: 227 ----GQSAHTLFRRVDHAGRKLTLMALRPLTGRTHQLRIHMA-LIGHVICGDGKYG---- 277
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
G+D G ++ +Q LHLH ++ LP+
Sbjct: 278 ---------------------------GVDAHPGGMVARQ--LHLHAWQLKLPD 302
>gi|291383615|ref|XP_002708351.1| PREDICTED: RNA pseudouridylate synthase domain containing 4
[Oryctolagus cuniculus]
Length = 367
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 132/289 (45%), Gaps = 61/289 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G+R I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 114 LPVHGGPGVRLCISDVLPILAKMLRGHKAEPLHLCHRLDKETTGVMVLTWEKEVAHQVQE 173
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV 116
+FR R + + YWA+ V P S GV+ P+ K V + ++T+
Sbjct: 174 LFRT--------------RQVVKKYWAITVHVPVPSAGVVDIPIIEKEVQGQRQHHKMTL 219
Query: 117 -----VNNDQIM------SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
++N +++ SA AVT+YQV+ S L+L P+TG KHQLRVH + L
Sbjct: 220 SPSYRMDNGKMVKVRSSRSAHLAVTQYQVLS-STLSSALLELQPITGIKHQLRVHLSFGL 278
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
PI+GD+KY SD ++ + +++P GL+ + LHL
Sbjct: 279 ECPILGDHKY-------------SDWNRLAPQKLPGGTLKKLGLEQSKARHIP----LHL 321
Query: 226 HCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
H +++ LP + S+ E L L LP RS L
Sbjct: 322 HARQLILPALG--------------SRKEELNLTCKLPHFFVRSLSRLG 356
>gi|344291607|ref|XP_003417526.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Loxodonta africana]
Length = 375
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 128/289 (44%), Gaps = 61/289 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 113 LPVHGGPGVQLCITDVLPILAKMLRGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQQ 172
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS------ 111
+F KT +K+ YWA+ + P S GV+ P+ + V +
Sbjct: 173 LF--KTHQVAKK------------YWAITIRVPTPSAGVVDIPIIEKEVQGQQKHRKMTL 218
Query: 112 ------DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
D T+V +A AVT+YQV+ S L+L P+TG KHQLRVH + L
Sbjct: 219 SPSYRMDNGTMVKVRSSRNAHIAVTQYQVLS-STLSSALLELHPVTGVKHQLRVHLSFGL 277
Query: 166 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 225
PI+GD+KY W + P LS + +++ GL+ + LHL
Sbjct: 278 DCPILGDHKYS-----DWNRLAPQKLSAGTLKKL--------GLEQSKTRYIP----LHL 320
Query: 226 HCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
H +++ LP + S+ E L LV +P RS L
Sbjct: 321 HARQLVLPAMG--------------SRKEELNLVCKVPRFFVRSLSRLG 355
>gi|62751988|ref|NP_001015616.1| RNA pseudouridylate synthase domain-containing protein 4 [Bos
taurus]
gi|75057865|sp|Q5E9Z1.1|RUSD4_BOVIN RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|59857799|gb|AAX08734.1| hypothetical protein FLJ14494 [Bos taurus]
gi|59857921|gb|AAX08795.1| hypothetical protein FLJ14494 [Bos taurus]
Length = 377
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 275 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 320 --LHLHACQLTLPALQP--QKEELTLLC 343
>gi|95767470|gb|ABF57296.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
Length = 373
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 111 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 170
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 171 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 216
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 217 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVH 270
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 271 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 315
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 316 --LHLHACQLTLPALQP--QKEELTLLC 339
>gi|453331600|dbj|GAC86514.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
thailandicus NBRC 3255]
Length = 243
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 78/148 (52%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L HRLD D+SG L++ R +T+ F + R +++ YW +V G
Sbjct: 73 PWLAHRLDADTSGCLLIARRKTALLEAQVAF--------------QNRQVRKLYWTVVEG 118
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
TP +G ISAPL + N R+ V AVTR++V+ +G +WL+L
Sbjct: 119 TPAEDEGEISAPL--LRQSNPSGWRMIVDPK-----GDAAVTRWRVLG-RANGRSWLELE 170
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ R+HCA LGTPIVGD YG
Sbjct: 171 LLTGRTHQARIHCAS-LGTPIVGDRVYG 197
>gi|95769474|gb|ABF57439.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
Length = 375
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 113 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 172
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 173 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 218
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 219 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVH 272
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 273 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 317
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 318 --LHLHACQLTLPALQP--QKEELTLLC 341
>gi|153940691|ref|YP_001390824.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
Langeland]
gi|384461876|ref|YP_005674471.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
230613]
gi|152936587|gb|ABS42085.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
Langeland]
gi|295318893|gb|ADF99270.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
230613]
Length = 305
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + +HAVT Y+VI+ +T ++
Sbjct: 177 IIKYEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE-RFKNHTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|308321724|gb|ADO28005.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
furcatus]
Length = 386
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 111/251 (44%), Gaps = 56/251 (22%)
Query: 5 GGIG--IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
GGIG I S+ LA + + L++D++G+L + T+ +A +H++ R
Sbjct: 141 GGIGNSIAESLPVLAKIIDCTKGGSKLHVCYNLEKDTTGVLFLAWTEETAERIHNLIR-- 198
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP----------------LGKVVV 106
+ EKR Y + VG P S+GVI P L +
Sbjct: 199 -------SHQAEKR-----YMVITVGVPVPSEGVIDIPIIEKEVMGDQHHFKMGLSPLYR 246
Query: 107 DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 166
+ D + V ++ AQ AVTRY+V+ S G + ++ P+TG KHQLRVH A L
Sbjct: 247 PTEEGDGLVRVRANR--QAQSAVTRYKVLD-SSSGCSLVEFQPVTGVKHQLRVHMALALA 303
Query: 167 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKE--KTLHFGLDLESGSILEKQPRLH 224
PI+GD+KY W + P L + + E KT HF LH
Sbjct: 304 CPILGDHKYS-----HWNKLAPQKLPEGVLRRLGLEQSKTRHFP--------------LH 344
Query: 225 LHCKEMTLPNV 235
LH +++TLP V
Sbjct: 345 LHVRQITLPGV 355
>gi|251778563|ref|ZP_04821483.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243082878|gb|EES48768.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 302
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + S L + ++ + + R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHS--------------MNREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI PLG+ K +R+ + + + A+T Y+V++ G T +K
Sbjct: 177 RFKNDSGVIDKPLGR-----DKKNRLKIAITE---DGRRAITHYEVLERYDTGCTLIKCK 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDL 191
TGR HQ+RVH A LG P+VGD YG++ R K + H L
Sbjct: 229 LETGRTHQIRVHMAS-LGHPLVGDPLYGFKKQRFKLKGQMLHAKKL 273
>gi|188590369|ref|YP_001921578.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
gi|188500650|gb|ACD53786.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
Length = 302
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + S L + ++ + + R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHS--------------MNREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI PLG+ K +R+ + + + A+T Y+V++ G T +K
Sbjct: 177 RFKNDSGVIDKPLGR-----DKKNRLKIAITE---DGRRAITHYEVLERYDTGCTLIKCK 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDL 191
TGR HQ+RVH A LG P+VGD YG++ R K + H L
Sbjct: 229 LETGRTHQIRVHMAS-LGHPLVGDPLYGFKKQRFKLKGQMLHAKKL 273
>gi|54308380|ref|YP_129400.1| 23S rRNA ribosomal pseudouridinesynthase [Photobacterium profundum
SS9]
gi|46912808|emb|CAG19598.1| putative 23S rRNA ribosomal pseudouridinesynthase [Photobacterium
profundum SS9]
Length = 307
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A Y E LVHR+DRD+SGIL++ + +++ L FRE
Sbjct: 107 VHGGSGLKFGAIEALRALRPDARYLE---LVHRIDRDTSGILLVAKKRSALRKLQEQFRE 163
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S ++APL K V++ I VN +
Sbjct: 164 KT--------------VKKYYFALVMGEWKASSKKVTAPLLKNEVNS-----IVRVNPN- 203
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ H T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 204 ---GKASDTRFKVLERFEHA-TLVQASPVTGRTHQIRVHC-QYEGHPIAWDDRYG 253
>gi|421595439|ref|ZP_16039476.1| hypothetical protein BCCGELA001_00447 [Bradyrhizobium sp.
CCGE-LA001]
gi|404272451|gb|EJZ36094.1| hypothetical protein BCCGELA001_00447 [Bradyrhizobium sp.
CCGE-LA001]
Length = 241
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 34/176 (19%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + S D L + PP L HRLD+D+SG LV+GR + + L +F+
Sbjct: 41 KGGPNLEDSFD-----ALRFGLPRPPVLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGK 95
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YW +V G ++G I PLG++ + G K D
Sbjct: 96 IGKT--------------YWTVVEGGHIENEGTIDMPLGRLNAERGWWQKPD-------- 133
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q A+T ++V+ G TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 134 --PEGQKAITNWKVMG-RGEGLTWLAMEPVTGRTHQLRVHSAAT-GWPIFGDNIYG 185
>gi|163751081|ref|ZP_02158312.1| RluC [Shewanella benthica KT99]
gi|161329242|gb|EDQ00241.1| RluC [Shewanella benthica KT99]
Length = 319
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 26/179 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ + A T + E LVHRLD+D+SG+L++ + +++ LH
Sbjct: 114 IAVHGGSGVDFGVIEAMRALRPTQKFLE---LVHRLDKDTSGVLLIAKKRSALRHLHDQL 170
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R K +Q+ Y ALV GT + VI APL K+ + +G +RI VN
Sbjct: 171 RFKK--------------MQKDYQALVKGTWQARDKVIKAPLLKLTLKSG--ERIVRVNQ 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + TR+++++ G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 215 E----GKECETRFKILQ-RYQGATLVQASPVTGRTHQIRVHC-QYAGHPIACDDKYSEQ 267
>gi|83312510|ref|YP_422774.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947351|dbj|BAE52215.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 225
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 29/163 (17%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L++ P L HRLDR++SG LV+GRT + L +F K +
Sbjct: 41 ALSFGLKRRPELAHRLDRETSGCLVLGRTSKALAGLGELF--------------AKGLAD 86
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIK 136
+ YWA+VVG PR +GVI L K G + DR + + VT+++++
Sbjct: 87 KTYWAVVVGKPREDQGVIDYALKKREKKFGWRMEVDRTGLAS----------VTQWRLLG 136
Query: 137 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 137 SDGR-LSWLECRPLTGRTHQIRAHCAAI-GHPLVGDSIYGRGT 177
>gi|410724119|ref|ZP_11363318.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
gi|410602405|gb|EKQ56885.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
Length = 305
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + L ++ + ++R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDEAHNKLSEQLKDHS--------------MKREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ KG I PL + K DR+ + + + AVT Y+V++ +GYT +K
Sbjct: 177 RIKNDKGTIDKPLAR-----NKKDRLKI---GIVEGGKKAVTHYEVLE-RYNGYTLIKCK 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 228 LETGRTHQIRVHMASI-GFPLVGDPLYGFKKQK 259
>gi|148379448|ref|YP_001253989.1| pseudouridine synthase [Clostridium botulinum A str. ATCC 3502]
gi|153934249|ref|YP_001383827.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
ATCC 19397]
gi|153935171|ref|YP_001387377.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
Hall]
gi|387817752|ref|YP_005678097.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
gi|148288932|emb|CAL83019.1| putative ribosomal large subunit pseudouridine synthase
[Clostridium botulinum A str. ATCC 3502]
gi|152930293|gb|ABS35793.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
ATCC 19397]
gi|152931085|gb|ABS36584.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
Hall]
gi|322805794|emb|CBZ03359.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
Length = 305
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + +HAVT Y+VI+ +T ++
Sbjct: 177 IIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE-RFKNHTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|429738663|ref|ZP_19272457.1| pseudouridine synthase, RluA family [Prevotella saccharolytica
F0055]
gi|429159499|gb|EKY02004.1| pseudouridine synthase, RluA family [Prevotella saccharolytica
F0055]
Length = 564
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 91/176 (51%), Gaps = 33/176 (18%)
Query: 19 TCLTYDY-------SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDN 71
TC YD S+ P +VHRLDRD+SG+L++ +T+ L + FR
Sbjct: 363 TCSVYDIVKERFKESDSPLMVHRLDRDTSGLLIIAKTKQCHKQLQAAFR----------- 411
Query: 72 DNEKRILQRWYWALVVGTPRCSK--GVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 129
K+++++ Y AL+ G K G I PL +D R TV N Q+ + AV
Sbjct: 412 ---KKLVKKRYIALLEGVLPEDKQQGRIELPLMPDYLDR---PRQTV--NHQM--GKPAV 461
Query: 130 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 183
T Y+V+ S +G+T + L P TGR HQLRVHCA G PI+GD YG + R +
Sbjct: 462 TDYEVLGRS-NGHTLIALYPQTGRTHQLRVHCAHPAGLDMPILGDTLYGKKADRMY 516
>gi|168180134|ref|ZP_02614798.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226948812|ref|YP_002803903.1| RluA family pseudouridine synthase [Clostridium botulinum A2 str.
Kyoto]
gi|182669142|gb|EDT81118.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226841647|gb|ACO84313.1| pseudouridine synthase, RluA family [Clostridium botulinum A2 str.
Kyoto]
Length = 305
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + +HAVT Y+VI+ +T ++
Sbjct: 177 IIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE-RFKNHTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|320168809|gb|EFW45708.1| pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 748
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 71/275 (25%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
+ A CL P +VHRLD++++G L++ R A +L F +
Sbjct: 401 QFEAPCL-------PHIVHRLDKNTTGALLLARNPRVARILSRAF--------------Q 439
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT----VVNNDQIMS------ 124
K+ + + Y A+V G P G+I+ PL + + +T + +D + +
Sbjct: 440 KQRIGKTYTAIVAGAPPFDSGIINCPLEVISATTARKVGVTPGTVLCRHDLVYANETSYL 499
Query: 125 -----AQHAVTRYQVIKPSCHGYTWL-KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
A A+T + V+ S G L + P++GRKHQLRVH ++ LG PI+GD +YG
Sbjct: 500 RTRRDALSAITHFSVVGRSSRGPAALIEFVPMSGRKHQLRVHSSKYLGHPILGDNRYG-- 557
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
P E LH L + +L LH + + +P++ Q
Sbjct: 558 ------------------NGCPVE--LHEPLGIAGWDAKNDVVKLQLHARSIVVPSLDQQ 597
Query: 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 273
+ L ++APLP+HM+ D L
Sbjct: 598 RNN------------KPLVVLAPLPAHMKEVMDKL 620
>gi|188582089|ref|YP_001925534.1| pseudouridine synthase [Methylobacterium populi BJ001]
gi|179345587|gb|ACB80999.1| pseudouridine synthase [Methylobacterium populi BJ001]
Length = 249
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 78/157 (49%), Gaps = 22/157 (14%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG LV+GR + L+ +F + K D
Sbjct: 54 ALRFGLPRRPEAAHRLDRDTSGCLVLGRHARALARLNRLFAD-----GKADKT------- 101
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
YWALV G P ++G I PL K D R + D + ++T Y+V+
Sbjct: 102 --YWALVEGGPDEAEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLG-RA 152
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G +WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 153 DGLSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|57239048|ref|YP_180184.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|58578991|ref|YP_197203.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|57161127|emb|CAH58040.1| putative ribosomal large subunit pseudouridine synthase C
[Ehrlichia ruminantium str. Welgevonden]
gi|58417617|emb|CAI26821.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
Length = 305
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 29/195 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG ++ SI ++ + E ++VHRLD+ +SGIL++ R + ++ + F+
Sbjct: 108 VSVQGGSKVKISISDVLDSI---RIGESMKIVHRLDKSTSGILMLARNARVSRLIMNEFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ R +++ Y AL G P G I P+ K K IT+ N
Sbjct: 165 D--------------RKVKKKYLALTCGIPDDDFGQIDYPIVK------KKHGITLEKNM 204
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW--- 177
M Q AVT + ++ + L L P+TGRKHQ+R+H + + G PIVGD KYG
Sbjct: 205 SFM--QQAVTMFSTLRKLPNDIGLLDLQPITGRKHQIRIHLSRI-GCPIVGDVKYGKICD 261
Query: 178 QTHRKWKQFHPSDLS 192
+ Q H LS
Sbjct: 262 SISNDYLQLHAYFLS 276
>gi|16125533|ref|NP_420097.1| ribosomal large subunit pseudouridine synthase D [Caulobacter
crescentus CB15]
gi|221234280|ref|YP_002516716.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13422619|gb|AAK23265.1| ribosomal large subunit pseudouridine synthase D [Caulobacter
crescentus CB15]
gi|220963452|gb|ACL94808.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 270
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 21/149 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P+LVHRLDRD+SG+++ +T+ +A +L K F S Y A+V G
Sbjct: 79 PKLVHRLDRDTSGVILTAKTKPAAAMLGKALEAKRFRKS--------------YLAIVAG 124
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL-KL 147
P G+I +PL + + G+ + V D A+ A +RY+ + + +G L +L
Sbjct: 125 APEPKGGMIDSPLRRESI--GREAYMRVCEPDHP-DAETARSRYRTL--AHNGLAALVEL 179
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
SP TGR HQLRVH A + G P+ GD +YG
Sbjct: 180 SPDTGRMHQLRVHMASI-GRPLAGDSRYG 207
>gi|182417977|ref|ZP_02949285.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237667420|ref|ZP_04527404.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378148|gb|EDT75683.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237655768|gb|EEP53324.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 304
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L ++ + ++R Y+AL+ G
Sbjct: 131 PGIVHRIDKDTSGILVIAKNDDAHNKLSEQLKDHS--------------MKREYYALIEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ + G I PLG+ K DR+ + I + AVT Y+V++ +GYT +K
Sbjct: 177 RLKNNDGTIDKPLGRC-----KKDRLKI---GIIEDGKRAVTHYEVVE-RYNGYTLVKCV 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 228 LETGRTHQIRVHMASI-GFPLVGDPLYGFKRQK 259
>gi|168182405|ref|ZP_02617069.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|237794814|ref|YP_002862366.1| RluA family pseudouridine synthase [Clostridium botulinum Ba4 str.
657]
gi|182674415|gb|EDT86376.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|229261378|gb|ACQ52411.1| pseudouridine synthase, RluA family [Clostridium botulinum Ba4 str.
657]
Length = 305
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + +HAVT Y+VI+ +T ++
Sbjct: 177 IIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE-RFKNHTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|170756442|ref|YP_001781114.1| RluA family pseudouridine synthase [Clostridium botulinum B1 str.
Okra]
gi|429247523|ref|ZP_19210766.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
gi|169121654|gb|ACA45490.1| pseudouridine synthase, RluA family [Clostridium botulinum B1 str.
Okra]
gi|428755477|gb|EKX78105.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
Length = 305
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + +HAVT Y+VI+ +T ++
Sbjct: 177 IIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE-RFKNHTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|260893452|ref|YP_003239549.1| RluA family pseudouridine synthase [Ammonifex degensii KC4]
gi|260865593|gb|ACX52699.1| pseudouridine synthase, RluA family [Ammonifex degensii KC4]
Length = 331
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ + + L + +E+ R+L+ YWALV G
Sbjct: 132 PGIVHRLDKDTSGLLMVAKNDAAHLSLSAQLKER-------------RVLKE-YWALVYG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ ++G I AP+G+ ++ VV + AVT Y+V++ GYT L++
Sbjct: 178 EVKPAQGRIEAPIGR---HPRYRQKMAVV-----AGGRPAVTHYEVVE-YFPGYTLLRVR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+RVH LG PIVGD KYG
Sbjct: 229 PETGRTHQIRVHL-HYLGHPIVGDLKYG 255
>gi|372271855|ref|ZP_09507903.1| ribosomal large subunit pseudouridine synthase C [Marinobacterium
stanieri S30]
Length = 324
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 23/175 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ S+ + A S LVHRLDRD+SG +++ + ++ LH R
Sbjct: 114 LAVHGGSGV--SLGMIEALRQIRPKSRFLELVHRLDRDTSGCIMVAKKRSMLRYLHDALR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ R + + Y ALVVG K I APL + + +G +R+ VN D
Sbjct: 172 Q--------------RKVNKIYHALVVGRWEKRKQAIDAPLLRYELKSG--ERMVKVNPD 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ +VTR+QV++ T ++ PLTGR HQ+RVH + G PIVGD KY
Sbjct: 216 ----GKPSVTRFQVLRRFQDAATLIEARPLTGRTHQIRVHT-QYAGHPIVGDVKY 265
>gi|429765557|ref|ZP_19297842.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429186008|gb|EKY26971.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 315
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 25/154 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + ++R Y+ALV G
Sbjct: 143 PGIVHRIDKDTSGILVIAKNDDAHNSLAVQFKDHS--------------IKREYYALVEG 188
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITV-VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKL 147
+G + P+ + K DRI + +N+D + AVT Y+V++ G + +K
Sbjct: 189 RFSTLEGTVDKPISR-----DKKDRIKMAINSD----GKRAVTHYEVLEQYDKGVSLIKC 239
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
+ TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 240 TLETGRTHQIRVHMASI-GHPLVGDLVYGYKRQK 272
>gi|301782175|ref|XP_002926502.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Ailuropoda melanoleuca]
Length = 345
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 55/247 (22%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR + + + YWA+ V P GV+ P+
Sbjct: 175 LFRTRQVA--------------KKYWAVTVRVPVPPAGVVDIPV---------------- 204
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
I AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 205 ----IEKEVQAVTQYQVLS-STLSSALVELQPITGVKHQLRVHLSFGLDCPILGDHKYS- 258
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL + LHLH +++ LP +
Sbjct: 259 ----DWNKLAPQKLSLGTLKKL--------GLQQAKARHIP----LHLHARQLILPALGS 302
Query: 238 AIQKVQL 244
+++ L
Sbjct: 303 RKEELNL 309
>gi|372266753|ref|ZP_09502801.1| 23S rRNA pseudouridylate synthase C [Alteromonas sp. S89]
Length = 309
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 30/178 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPP--RLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+ V GG G+R + E L Y E P LVHRLDRD+SG +++ R + A +LH
Sbjct: 107 LAVHGGSGVRLGLIE----ALRQMYPESPFMELVHRLDRDTSGAILVARKR--AVLLHV- 159
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGT-PRCSKGVISAPLGKVVVDNGKSDRITVV 117
+ A K D Y AL VG PR K ++ APL K + +G +R+ VV
Sbjct: 160 --QSELRAGKMDKS---------YLALAVGKWPRAQK-LVEAPLRKNTLKSG--ERMVVV 205
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ + + + TR+QV + G T ++ P+TGR HQ+RVH A+ +G P+ GD KY
Sbjct: 206 DGE----GKPSTTRFQV-EERLDGATLMRAEPVTGRTHQIRVH-AQFVGCPLAGDAKY 257
>gi|357032032|ref|ZP_09093972.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
morbifer G707]
gi|356414259|gb|EHH67906.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
morbifer G707]
Length = 221
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 73/148 (49%), Gaps = 22/148 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L HRLD D++G L++ R +T+ FR R + YWA+VVG
Sbjct: 50 PWLAHRLDADTAGCLLIARRKTALLEAQDAFRH--------------RRTHKLYWAVVVG 95
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I+ PL K NG R+ V N +A T ++V+ G WL+L
Sbjct: 96 NPPEDSGSITGPLLKRSDRNGW--RMVVDAN-----GDNARTDWRVLGRK-DGLCWLELD 147
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ R HCA LGTPI+GD YG
Sbjct: 148 LLTGRTHQARAHCAAALGTPILGDPVYG 175
>gi|410972311|ref|XP_003992603.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Felis catus]
Length = 377
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 119/264 (45%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLRGHKAEPLHLCHRLDKETTGVMVLAWEKEMAHRVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R + + YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVVKKYWAIAVRVPVPSAGVVDIPIVEKEVQGPQQHYKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK R N + AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPGYRMDNGKMVRARTSRNAHV-----AVTQYQVLS-STLSSALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNKLAPQKLSVGTLKKL--------GLKQAKARHIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLVLPALGSRKEELNL 341
>gi|163852141|ref|YP_001640184.1| pseudouridine synthase [Methylobacterium extorquens PA1]
gi|163663746|gb|ABY31113.1| pseudouridine synthase [Methylobacterium extorquens PA1]
Length = 239
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG LV+GR + L+ +F + +
Sbjct: 54 ALRFGLPRRPEATHRLDRDTSGCLVLGRHAKALARLNRLFADGKVDKT------------ 101
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
YWALV G P +G I PL K D R + D + ++T Y+V+
Sbjct: 102 --YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTFYRVLG-RT 152
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 153 EGLCWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|147678153|ref|YP_001212368.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
gi|146274250|dbj|BAF59999.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
Length = 312
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++++ + T+ L +E+ + R Y ALV G
Sbjct: 132 PGIVHRLDKDTSGLIMVAKNDTAHLSLARQLKERQIT--------------RRYLALVHG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G++ AP+G+ D ++ V+ + A+ AVTRY+V++ GYT+++L
Sbjct: 178 LLKEQSGMVDAPIGR---DPRDRKKMAVLQKN----AKQAVTRYRVLE-RFKGYTYIELM 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + + G P+VGD KYG
Sbjct: 230 LETGRTHQIRVHMSYI-GHPVVGDLKYG 256
>gi|220924284|ref|YP_002499586.1| pseudouridine synthase [Methylobacterium nodulans ORS 2060]
gi|219948891|gb|ACL59283.1| pseudouridine synthase [Methylobacterium nodulans ORS 2060]
Length = 228
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG L +GR + L +F A E ++
Sbjct: 44 ALRFGLPRRPEAAHRLDRDTSGCLALGRHAKALARLGGLF------AGCE--------VR 89
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
+ YWALV G P +G I PL + +SD + A+TR+++
Sbjct: 90 KTYWALVEGMPAAEEGAIDLPLAR------RSDDPRSWWMKPDPAGDPALTRWRLRGRGP 143
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 144 DGSAWLELEPVTGRTHQLRVHCA-AMGWPIRGDAIYG 179
>gi|408356929|ref|YP_006845460.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
gi|407727700|dbj|BAM47698.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
Length = 304
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 23/155 (14%)
Query: 22 TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
T + + P +VHR+DRD+SG+L++ +T + L ++ R QR
Sbjct: 124 TINGEDRPGIVHRIDRDTSGLLIIAKTDQAYESLAQQLKD--------------REAQRT 169
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
Y ALV G G I AP+G+ D + VVNN + A+T ++VI+
Sbjct: 170 YLALVHGAIPHEYGTIEAPIGRNPKD---RQSMAVVNN-----GKEAITYFEVIERINQK 221
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
YT +K S TGR HQ+RVH + +G PIVGD KYG
Sbjct: 222 YTLIKCSLKTGRTHQIRVHL-KYIGFPIVGDPKYG 255
>gi|59857911|gb|AAX08790.1| hypothetical protein FLJ14494 [Bos taurus]
gi|157279001|gb|AAI34591.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
gi|296471773|tpg|DAA13888.1| TPA: RNA pseudouridylate synthase domain-containing protein 4 [Bos
taurus]
Length = 377
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+Y+V+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYRVLS-SSLSAALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 275 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 320 --LHLHACQLTLPALQP--QKEELTLLC 343
>gi|110331955|gb|ABG67083.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
Length = 377
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+Y+V+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYRVLS-SSLSAALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 275 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 320 --LHLHACQLTLPALQP--QKEELTLLC 343
>gi|297690651|ref|XP_002822726.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Pongo abelii]
Length = 346
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 54/247 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR R + + YWA+ V P S GV+ P +V+
Sbjct: 175 LFRT--------------RQVVKKYWAITVRVPMPSAGVVDIP----IVEK--------- 207
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 208 ------EAQVAVTQYQVLS-STLSSALLELQPITGIKHQLRVHLSFGLDCPILGDHKYS- 259
Query: 178 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 237
W + P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 260 ----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGS 303
Query: 238 AIQKVQL 244
+++ L
Sbjct: 304 GKEELNL 310
>gi|157375768|ref|YP_001474368.1| lysozyme [Shewanella sediminis HAW-EB3]
gi|157318142|gb|ABV37240.1| Lysozyme [Shewanella sediminis HAW-EB3]
Length = 325
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCL-TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I E + T + E L HRLD+D+SG+L++ + +++ LH
Sbjct: 120 LAVHGGSGVDFGIIEAMRSLRPTQKFLE---LAHRLDKDTSGVLLIAKKRSALRHLHDQL 176
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R K +Q+ Y ALV GT + I APL K+ + +G +RI VN
Sbjct: 177 RFKK--------------MQKDYQALVKGTWQARDKAIKAPLLKLTLKSG--ERIVRVNQ 220
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ + TR+++I+ G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 221 E----GKECETRFKIIQ-RYQGSTLVQASPVTGRTHQIRVHC-QYTGHPIACDEKYSEQK 274
Query: 180 H 180
+
Sbjct: 275 Y 275
>gi|338707704|ref|YP_004661905.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336294508|gb|AEI37615.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 230
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 29/170 (17%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
LA+ C + + P +VHRLDRD+SG L++ R +H F E FS
Sbjct: 40 LASLC--FGFKRWPMIVHRLDRDTSGCLLLARNPR----IHRRFSE-AFSQG-------- 84
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS---AQHAVTRY 132
++++ YWA++ G P G+I PL K+ +V QI++ + AVTR+
Sbjct: 85 -LVKKCYWAILSGIPDKESGIIDLPLTKIS---------SVQKGWQIIADPKGKRAVTRW 134
Query: 133 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 182
++ Y+ ++ P TGR HQLRVH A LG PI+GD YG +K
Sbjct: 135 HLLA-RIGAYSLVEFQPETGRTHQLRVHAATGLGLPILGDPFYGTDKSQK 183
>gi|402496954|ref|YP_006556214.1| pseudouridylate synthase 23S RNA-specific [Wolbachia endosymbiont
of Onchocerca ochengi]
gi|398650227|emb|CCF78397.1| pseudouridylate synthase 23S RNA-specific [Wolbachia endosymbiont
of Onchocerca ochengi]
Length = 325
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREK 62
VQGGI + SI +L + ++VHRLD+D+SG+++ A L F+E+
Sbjct: 115 VQGGIKGKVSISDLLDRIRE---GKIFKIVHRLDKDTSGVIIFAHNTNVARYLMEEFKEQ 171
Query: 63 TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI 122
+++ Y AL G P +KGVI PL K + + VV+
Sbjct: 172 R--------------VKKTYLALTSGIPSKNKGVIDYPLIKKCISGQEK---VVVDK--- 211
Query: 123 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
S Q A T + VI ++KL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 212 YSPQSATTHFSVIARLEQNVAYVKLQPITGRTHQLRAHLAYI-NCPILGDGKYGGK 266
>gi|374812366|ref|ZP_09716103.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-1]
Length = 309
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+++ + L F+E R +++ Y A+V+G
Sbjct: 135 PGIVHRLDKDTSGVIIAAYDDEALAFLADQFKE--------------RRVKKTYGAIVLG 180
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
TPR G+I ++V D+ R TV + + A+TRY+VI+ S Y+ L L
Sbjct: 181 TPREKAGIIET---RIVRDSRDRKRFTVSPD----RGKPALTRYRVIR-SWGAYSLLLLQ 232
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQLRVH LG PI+GD YG
Sbjct: 233 PRTGRTHQLRVHLRH-LGHPILGDPIYG 259
>gi|187932847|ref|YP_001886621.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
gi|187721000|gb|ACD22221.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
Length = 302
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 26/167 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + S L + ++ + + R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHS--------------MNREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G+I PLG+ K +R+ + + + A+T Y+V++ G T +K
Sbjct: 177 RFKNDSGIIDKPLGR-----DKKNRLKIAITE---DGRRAITHYEVLERYDTGCTLIKCK 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 192
TGR HQ+RVH A LG P+VGD YG++ + K + H L
Sbjct: 229 LETGRTHQIRVHMAS-LGHPLVGDPLYGFKKQKFKLKGQMLHAKKLG 274
>gi|329889164|ref|ZP_08267507.1| RNA pseudouridylate synthase family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844465|gb|EGF94029.1| RNA pseudouridylate synthase family protein [Brevundimonas diminuta
ATCC 11568]
Length = 241
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 19/148 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLDRD+SG+++ +T+ +A + + F Q+ Y ALV
Sbjct: 64 PELVHRLDRDTSGVILAAKTKPAAGFFGKAMQMRKF--------------QKTYLALVAA 109
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I++ L + + G+ + VV+ D AQ A + Y+ + S G ++LS
Sbjct: 110 APEPKSGRITSALRREEI--GRESYMRVVDFDAP-GAQGAASGYRTLASSEDGAV-VELS 165
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQLRVH A + G P+VGD +YG
Sbjct: 166 PETGRMHQLRVHMASI-GRPLVGDVRYG 192
>gi|294141325|ref|YP_003557303.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
gi|293327794|dbj|BAJ02525.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
Length = 319
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 26/179 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCL-TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ + E + T + E LVHRLD+D+SG+L++ + +++ LH
Sbjct: 114 IAVHGGSGVDFGVIEAMRSLRPTQKFLE---LVHRLDKDTSGVLLIAKKRSALRHLHDQL 170
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R K +Q+ Y ALV GT + VI APL K+ + +G +RI VN
Sbjct: 171 RFKK--------------MQKDYQALVKGTWQARDKVIKAPLLKLTLKSG--ERIVRVNQ 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + TR+++++ G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 215 E----GKECETRFKILQ-RYQGATLVQASPVTGRTHQIRVHC-QYAGHPIACDDKYSEQ 267
>gi|296533864|ref|ZP_06896396.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296265811|gb|EFH11904.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 236
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P+ HRLD D++G LV+GRT+ + L +F E + YWA+V G
Sbjct: 66 PQPAHRLDTDTAGCLVLGRTKPALAALGRLFAEGRARKT--------------YWAVVRG 111
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I PL K S T + Q A+TR++V + G WL+L
Sbjct: 112 GPAAQSGRIDLPLRKT------SSAATGWRMEAHPDGQPALTRWRV-RGRGPGLAWLELR 164
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQLRVHCA G PI+GD YG
Sbjct: 165 PETGRTHQLRVHCASQ-GWPILGDPFYG 191
>gi|149192304|ref|ZP_01870513.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio shilonii AK1]
gi|148833857|gb|EDL50885.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio shilonii AK1]
Length = 315
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 58/251 (23%)
Query: 1 MPVQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + F
Sbjct: 112 IAVHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQF 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT +Q++Y+ALV+G + S V+ APL K V++ I VN
Sbjct: 169 REKT--------------VQKYYFALVMGKWKPSCRVVKAPLLKNEVNS-----IVRVNP 209
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ + + TR++V++ S T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 210 N----GKPSETRFKVLE-SFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG--- 260
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLD---LESGSILEKQP----RLHLHCKEMTL 232
R++ + T GLD L + +I+ P ++ +H EM
Sbjct: 261 DRRFDAY-----------------TAKVGLDRLFLHAANIVFMHPANDEKMEIHA-EME- 301
Query: 233 PNVSQAIQKVQ 243
P + QAI+K++
Sbjct: 302 PKLQQAIKKLK 312
>gi|148652292|ref|YP_001279385.1| RluA family pseudouridine synthase [Psychrobacter sp. PRwf-1]
gi|148571376|gb|ABQ93435.1| ribosomal large subunit pseudouridine synthase C [Psychrobacter sp.
PRwf-1]
Length = 364
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E + Y E LVHR+D+D+SG+L++ + +++ VL R
Sbjct: 163 MAVHGGSGLDFGVIEAMRDATSKKYLE---LVHRIDKDTSGLLMIAKKRSTLKVLQEYLR 219
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +Q+ Y LV G P ++ I APL + V NG+ N
Sbjct: 220 EKT--------------IQKHYLCLVKGQPALNEFEIDAPLLRYTVANGERRVKVDKANP 265
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ +Q K + + ++ P TGR HQ+RVH A LG PI+GD KY +
Sbjct: 266 EAKLSQTTCKVLARFKMNGEPVSLIEAMPHTGRTHQIRVHLA-YLGHPILGDDKYNIK 322
>gi|427797463|gb|JAA64183.1| Putative ribosomal pseudouridine synthase, partial [Rhipicephalus
pulchellus]
Length = 671
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
VHRLDRD +G +V+ +TQ A VL ++F E S + Y A+ G P
Sbjct: 465 VHRLDRDVTGAIVLAKTQRMADVLQTLFEEHNIS--------------KTYHAITFGVPD 510
Query: 92 CSKGVISAPLGKVVVDNGKSDRITVVNN---------DQIMSAQHAVTRYQVIKPSCHG- 141
+ I PL + V G + R+ + + A+T Y+V+ S HG
Sbjct: 511 NDRATIDMPLAEGSV--GSAKRMVICPKLEPEFERLVPKFSKTYEAITHYRVL--SSHGR 566
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD--SNEEI 199
+L++ P+TG KHQ+RVH L PI+GD+KY ++ P LS D + +
Sbjct: 567 AAYLEVKPVTGVKHQIRVHLGFGLRCPILGDHKYSH-----LRELAPQRLSGDLLARLSV 621
Query: 200 PKEKTLHFGLDLESGSIL 217
+ K H + L + S+L
Sbjct: 622 RQTKVRHIPMHLHASSVL 639
>gi|260776340|ref|ZP_05885235.1| ribosomal large subunit pseudouridine synthase C [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607563|gb|EEX33828.1| ribosomal large subunit pseudouridine synthase C [Vibrio
coralliilyticus ATCC BAA-450]
Length = 314
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN
Sbjct: 171 KT--------------VQKYYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNP-- 209
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++I+ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 210 --QGKPSETRFKIIEKFAEA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|399888864|ref|ZP_10774741.1| pseudouridylate synthase [Clostridium arbusti SL206]
Length = 305
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 27/167 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + S L +E + + R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDKSHKFLAEQLKEHS--------------MNRIYLALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I APLG+ V+ K I++V N + AVT Y+VI+ T ++
Sbjct: 177 IIKVDEGTIDAPLGRHPVERIK---ISIVKN-----GREAVTHYKVIE-RFKNNTLVECK 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 192
TGR HQ+RVH A + G P+VGD YG++ R K + H L
Sbjct: 228 LETGRTHQIRVHMAHI-GHPLVGDPLYGYKKQRFNLKGQMLHAKKLG 273
>gi|58617049|ref|YP_196248.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
gi|58416661|emb|CAI27774.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
Length = 305
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG ++ SI ++ + E ++VHRLD+ +SGIL++ R + ++ + F+
Sbjct: 108 VSVQGGSKVKISISDVLDSI---RIGESMKIVHRLDKSTSGILMLARNSRVSRLIMNEFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ R +++ Y AL G P G I P+ K K IT+ N
Sbjct: 165 D--------------RKVKKKYLALTCGIPDDDCGQIDYPIVK------KKHGITLEKN- 203
Query: 121 QIMS-AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW-- 177
MS Q AVT + ++ + L L P+TGRKHQ+R+H + + G PIVGD KYG
Sbjct: 204 --MSFVQQAVTMFSTLRKLPNDIGLLDLQPITGRKHQIRIHLSHI-GCPIVGDVKYGKIC 260
Query: 178 -QTHRKWKQFHPSDLS 192
+ Q H LS
Sbjct: 261 DNISNNYLQLHAYFLS 276
>gi|410479981|ref|YP_006767618.1| 23S RNA-specific pseudouridylate synthase [Leptospirillum
ferriphilum ML-04]
gi|406775233|gb|AFS54658.1| pseudouridylate synthase, 23S RNA-specific [Leptospirillum
ferriphilum ML-04]
Length = 339
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 23/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG++V+G+T++ L + F++++ S + Y ALV G
Sbjct: 160 LVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVS--------------KKYLALVKGIL 205
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+G I+AP+G+ D K TV + + +VTRY+V++ Y+ L+++ L
Sbjct: 206 PKKRGEINAPIGRSTHDRKK---FTVRQD-----GKPSVTRYRVLETYHENYSLLEVTLL 257
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH LG P++GD YG
Sbjct: 258 TGRTHQIRVHF-RYLGFPLLGDAVYG 282
>gi|424866626|ref|ZP_18290458.1| Pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II 'C75']
gi|124516586|gb|EAY58094.1| ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum rubarum]
gi|387222715|gb|EIJ77134.1| Pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II 'C75']
Length = 339
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 23/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG++V+G+T++ L + F++++ S + Y ALV G
Sbjct: 160 LVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVS--------------KKYLALVKGIL 205
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+G I+AP+G+ D K TV + + +VTRY+V++ Y+ L+++ L
Sbjct: 206 PKKRGEINAPIGRSTHDRKK---FTVRQD-----GKPSVTRYRVLETYHENYSLLEVTLL 257
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH LG P++GD YG
Sbjct: 258 TGRTHQIRVHF-RYLGFPLLGDAVYG 282
>gi|407070993|ref|ZP_11101831.1| ribosomal large subunit pseudouridine synthase C [Vibrio
cyclitrophicus ZF14]
Length = 314
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH A+ G PI D +YG
Sbjct: 211 ---GKASETRFKVLE-KFQDATLVQASPITGRTHQIRVH-AQYTGHPIAWDDRYG 260
>gi|218709011|ref|YP_002416632.1| ribosomal large subunit pseudouridine synthase C [Vibrio splendidus
LGP32]
gi|218322030|emb|CAV18069.1| Ribosomal large subunit pseudouridine synthase C [Vibrio splendidus
LGP32]
Length = 314
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH A+ G PI D +YG
Sbjct: 211 ---GKASETRFKVLE-KFQEATLIQASPITGRTHQIRVH-AQYTGHPIAWDDRYG 260
>gi|89094316|ref|ZP_01167257.1| ribosomal large subunit pseudouridine synthase C [Neptuniibacter
caesariensis]
gi|89081375|gb|EAR60606.1| ribosomal large subunit pseudouridine synthase C [Oceanospirillum
sp. MED92]
Length = 321
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 31/180 (17%)
Query: 1 MPVQGGIGIR----RSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLH 56
+ V GG GI S ++ C + LVHRLDRD+SG +++ + +++ ++H
Sbjct: 114 IAVHGGSGISLGLIESFRQMRPQCKFLE------LVHRLDRDTSGCILIAKKRSTLKLMH 167
Query: 57 SIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 116
++ T + + Y ALVVG+ K I APL K + +G +R+
Sbjct: 168 DSLKKSTIT--------------KIYHALVVGSWSERKRRIDAPLKKNELKSG--ERVVK 211
Query: 117 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
V D + +T Y+V++ T ++ P+TGR HQ+RVHC + G PIVGD KYG
Sbjct: 212 VTAD----GKECLTEYKVLQRFGREATLVEARPITGRTHQIRVHC-QFAGHPIVGDEKYG 266
>gi|170726386|ref|YP_001760412.1| RluA family pseudouridine synthase [Shewanella woodyi ATCC 51908]
gi|169811733|gb|ACA86317.1| pseudouridine synthase, RluA family [Shewanella woodyi ATCC 51908]
Length = 319
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCL-TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I E + T + E L HRLD+D+SG+L++ + +++ LH
Sbjct: 114 LAVHGGSGVDFGIIEAMRSLRPTQKFLE---LAHRLDKDTSGVLLIAKKRSALRHLHDQL 170
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R K +Q+ Y ALV GT + I APL K+ + +G +RI VN
Sbjct: 171 RFKK--------------MQKDYQALVKGTWQARDKAIKAPLLKLTLKSG--ERIVRVNQ 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ + TR+++++ G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 215 E----GKECETRFKILQ-RYQGSTLVQASPVTGRTHQIRVHC-QYTGHPIACDEKYSEQK 268
Query: 180 H 180
+
Sbjct: 269 Y 269
>gi|339624005|ref|ZP_08659794.1| pseudouridylate synthase, 23S RNA-specific [Fructobacillus
fructosus KCTC 3544]
Length = 306
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 26/151 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFR-EKTFSASKEDNDNEKRILQRWYWALVV 87
P +VHR+DRD+SG+L++ + + L + + KT +R+Y+ALV
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDRAHQALAAELKAHKT---------------ERYYYALVK 173
Query: 88 GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKL 147
G + G + AP+G+ D K + + AVT ++V++ HGYT L+L
Sbjct: 174 GEFKEDHGTVDAPVGRHPKDRKKQAVVA--------GGREAVTHFEVLE-RFHGYTLLRL 224
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ TGR HQ+RVH + +G P+VGD YG Q
Sbjct: 225 ALETGRTHQIRVHM-QYIGHPVVGDATYGHQ 254
>gi|158320450|ref|YP_001512957.1| RluA family pseudouridine synthase [Alkaliphilus oremlandii OhILAs]
gi|158140649|gb|ABW18961.1| pseudouridine synthase, RluA family [Alkaliphilus oremlandii
OhILAs]
Length = 308
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 24/151 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + +L FR T + R Y A+VVG
Sbjct: 132 PGIVHRIDKDTSGLLVVAKNNAAHEILAEQFRAHTNT--------------RKYHAIVVG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
R + + AP+G+ VD K V ND +HAVT ++V++ +T+++
Sbjct: 178 NIREKEAAVDAPIGRHPVDRLKR----AVMND----GKHAVTHFKVLE-VFRDFTYIEAK 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVH + +G P+VGD YG ++
Sbjct: 229 LETGRTHQIRVHLS-YIGNPLVGDPLYGAKS 258
>gi|374335784|ref|YP_005092471.1| ribosomal large subunit pseudouridine synthase C [Oceanimonas sp.
GK1]
gi|372985471|gb|AEY01721.1| ribosomal large subunit pseudouridine synthase C [Oceanimonas sp.
GK1]
Length = 316
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ + E L A + E LVHRLDRD+SGIL++ + ++ LH
Sbjct: 111 MAVHGGSGLSFGVIEGLRALRPQARFLE---LVHRLDRDTSGILLVAKKRSMLRSLHEQL 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT + + Y ALV G + + V+ APL K + +G +R+ V+
Sbjct: 168 REKT--------------MDKHYLALVRGQWQSHQKVVKAPLKKNELASG--ERVVRVDK 211
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ G T ++ SP+TGR HQ+RVH G PI GD KYG
Sbjct: 212 E----GKPSETRFRIVQKFT-GATLVECSPVTGRTHQIRVHTLHA-GHPIAGDDKYG 262
>gi|86147922|ref|ZP_01066226.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. MED222]
gi|85834247|gb|EAQ52401.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. MED222]
Length = 314
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH A+ G PI D +YG
Sbjct: 211 ---GKASETRFKVLE-KFQEATLIQASPITGRTHQIRVH-AQYTGHPIAWDDRYG 260
>gi|113970739|ref|YP_734532.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|114047966|ref|YP_738516.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
gi|113885423|gb|ABI39475.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|113889408|gb|ABI43459.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
Length = 329
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 152 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRQKK--------------MQKDYLALVKGEW 197
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
V+ PL K+ + +G +RI VN + + + TR+++++ G T ++ SP+
Sbjct: 198 SAQDKVVKQPLLKLTLKSG--ERIVRVNGE----GKPSETRFKIVQ-RYQGCTLVQASPV 250
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVHC + +G PI D KY QT
Sbjct: 251 TGRTHQIRVHC-QYMGHPIACDEKYSEQT 278
>gi|344943140|ref|ZP_08782427.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
gi|344260427|gb|EGW20699.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
Length = 319
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 24/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
V GG G+ I E L + LVHRLD+D+SG L++ + +++ +LH +FR
Sbjct: 114 FAVHGGSGVSSGIIE--GLRLIRPEAHFLELVHRLDKDTSGCLIIAKKRSALKLLHELFR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
DN + + Y AL+ G K V++APL K V G +R+ V++
Sbjct: 172 -----------DNH---IHKTYLALLAGQWARKKLVVTAPLLKNVAKGG--ERMVVISQ- 214
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
S + A T ++ +K T ++ SP TGR HQ+RVH A LG PIVGD +YG
Sbjct: 215 ---SGKEAETLFRRVKLFSDS-TLVEASPKTGRTHQIRVHAAS-LGHPIVGDERYG 265
>gi|390452025|ref|ZP_10237581.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
gi|389660237|gb|EIM71944.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
Length = 267
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 87/177 (49%), Gaps = 38/177 (21%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDRD+SG++V+ +T + H + E TF+ D L+R Y A+V G
Sbjct: 67 PGIVHRLDRDTSGVMVVAKTDNA----HRLLSE-TFADHGRSGD-----LERAYVAVVWG 116
Query: 89 TPRCSKGVISAPLG--------KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK---P 137
P G I APLG + VV G+SD A+HAVTRYQV K
Sbjct: 117 APERMAGTIDAPLGRHAQSRTLRAVVPAGRSD------------ARHAVTRYQVQKRYGA 164
Query: 138 SCHGYTW---LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 191
G + ++ TGR HQ+RVH A + G P++GD YG K + P D+
Sbjct: 165 DGSGKAFAAKVECRLETGRTHQIRVHMAHI-GHPLIGDADYGRAFRTKVNRL-PEDI 219
>gi|294897749|ref|XP_002776058.1| Ribosomal large subunit pseudouridine synthase D, putative
[Perkinsus marinus ATCC 50983]
gi|239882591|gb|EER07874.1| Ribosomal large subunit pseudouridine synthase D, putative
[Perkinsus marinus ATCC 50983]
Length = 604
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 107/255 (41%), Gaps = 60/255 (23%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 85
SE P L+HRLD ++G+ ++ R +++AT+ D + R YW L
Sbjct: 313 SEVPILIHRLDTATAGVQLLARHKSAATM-------------ARDRIGARSFWNRIYWVL 359
Query: 86 VVG----TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSC 139
V G PR G I+ PL + G + + ++ A+TR++++K P
Sbjct: 360 VWGRVQLGPRQFSGTINIPL----IHRGHHVKPASFHTAEL----SAITRWEILKFSPFA 411
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEI 199
G T LKL P TGR+ QL+ HCA L TPIVGD Y + R W +P E
Sbjct: 412 GGITLLKLEPYTGRRDQLQAHCAFGLRTPIVGDDVYSKEAIR-WNDAYPEKHMLQRKEMF 470
Query: 200 PKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLV 259
+E L CK M Q S G D + ++
Sbjct: 471 GEE----------------------LICKRMVCSR-----QISMHSFGGD-----QIDII 498
Query: 260 APLPSHMQRSWDVLN 274
AP+P HMQ+ +D L
Sbjct: 499 APVPPHMQQMFDKLG 513
>gi|240139473|ref|YP_002963948.1| pseudouridine synthase [Methylobacterium extorquens AM1]
gi|240009445|gb|ACS40671.1| pseudouridine synthase [Methylobacterium extorquens AM1]
Length = 213
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG LV+GR + L+ +F + +
Sbjct: 28 ALRFGLPRRPEAAHRLDRDTSGCLVLGRHAKALARLNRLFADGKVDKT------------ 75
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPS 138
YWALV G P +G I PL K D R + D + ++T Y+V+ +
Sbjct: 76 --YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLGRSE 127
Query: 139 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
C +WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 128 C--LSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 162
>gi|260767405|ref|ZP_05876343.1| ribosomal large subunit pseudouridine synthase C [Vibrio furnissii
CIP 102972]
gi|260617640|gb|EEX42821.1| ribosomal large subunit pseudouridine synthase C [Vibrio furnissii
CIP 102972]
Length = 316
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 62/253 (24%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L S FRE
Sbjct: 115 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLIAKKRSALRQLQSQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYFALVMGEWKSQCKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG R
Sbjct: 212 ---GKPSETRFKILEKFADA-TLVQASPITGRTHQIRVHT-QYVGHPIAWDDRYG---DR 263
Query: 182 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 241
++ + T FG+D RL LH + + + +K
Sbjct: 264 RFDAY-----------------TAQFGID-----------RLFLHAANIQFAHPASG-EK 294
Query: 242 VQLSSGCDVSKLE 254
+++++ D +KLE
Sbjct: 295 MEINAPLD-AKLE 306
>gi|251772724|gb|EES53286.1| Ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum ferrodiazotrophum]
Length = 313
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 23/145 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+++SG+LV+G+ L FR +T S S Y AL +G P
Sbjct: 131 LVHRLDQNTSGLLVVGKKSEVVDHLMEQFRGRTVSKS--------------YIALAIGIP 176
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+G+I AP+G+ NG + V + + + TRY+V+ GY+ L ++ L
Sbjct: 177 PSRRGLIDAPIGR---SNGDRKKFAVTSG-----GKPSQTRYRVMTAYREGYSLLDITLL 228
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH LG P+ GD Y
Sbjct: 229 TGRTHQIRVHMQH-LGYPLAGDPVY 252
>gi|84394338|ref|ZP_00993060.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio splendidus 12B01]
gi|84375031|gb|EAP91956.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio splendidus 12B01]
Length = 314
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPDSRFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH A+ G PI D +YG
Sbjct: 211 ---GKASETRFKVLE-KFQDATLVQASPITGRTHQIRVH-AQYTGHPIAWDDRYG 260
>gi|424827321|ref|ZP_18252130.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
gi|365980244|gb|EHN16280.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
Length = 305
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + ++AVT Y+VI+ +T ++
Sbjct: 177 IIKNEQGTIEAPIGRHPVDRIK---MAVVKD-----GRYAVTHYKVIE-RFKNHTLVECK 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|336123712|ref|YP_004565760.1| ribosomal large subunit pseudouridine synthase [Vibrio anguillarum
775]
gi|335341435|gb|AEH32718.1| Ribosomal large subunit pseudouridine synthase [Vibrio anguillarum
775]
Length = 318
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 118 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 174
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 175 KT--------------IQKYYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 214
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 215 ---GKASETRFKILEQFAQA-TLVQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 264
>gi|257126163|ref|YP_003164277.1| pseudouridine synthase [Leptotrichia buccalis C-1013-b]
gi|257050102|gb|ACV39286.1| pseudouridine synthase, RluA family [Leptotrichia buccalis
C-1013-b]
Length = 326
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ + + L +F +KT +++ Y A++ G
Sbjct: 150 PGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKT--------------VKKIYLAILKG 195
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I +G+ D ++TV+N+ + S + A+T Y+VI +T +K+
Sbjct: 196 KLNQKSGRIVTQIGR---DKNDRKKMTVIND--LNSGKTAITNYEVI-SQTEKFTLVKVH 249
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 192
TGR HQ+RVH LG PI+GD YG K + H L
Sbjct: 250 IETGRTHQIRVHMKH-LGYPILGDSVYGRTDTEKRQMLHAYKLE 292
>gi|383785597|ref|YP_005470167.1| ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum ferrooxidans C2-3]
gi|383084510|dbj|BAM08037.1| putative ribosomal large subunit pseudouridine synthase, RluA
family [Leptospirillum ferrooxidans C2-3]
Length = 356
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 23/149 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG++V+G+T+ + L FR+ RI+ + Y ALV G P
Sbjct: 176 LVHRLDQDTSGVMVIGKTEHAVNNLMVQFRD--------------RIVSKRYLALVSGIP 221
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ +G I APLG+ D ++ V D + + TRY+VI + ++ L
Sbjct: 222 KKRRGEIDAPLGRSSHDR----KMFAVRED----GKQSTTRYRVITSYRENCALVDITLL 273
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVH + G P++GD Y +
Sbjct: 274 TGRTHQIRVHFKHI-GHPLLGDKVYAGKN 301
>gi|418059138|ref|ZP_12697095.1| pseudouridine synthase [Methylobacterium extorquens DSM 13060]
gi|373567333|gb|EHP93305.1| pseudouridine synthase [Methylobacterium extorquens DSM 13060]
Length = 239
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG LV+GR + L+ +F + +
Sbjct: 54 ALRFGLPRRPEAAHRLDRDTSGCLVLGRHAKALARLNRLFADGKVDKT------------ 101
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPS 138
YWALV G P +G I PL K D R + D + ++T Y+V+ +
Sbjct: 102 --YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLGRSE 153
Query: 139 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
C +WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 154 C--LSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|260752988|ref|YP_003225881.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411950|ref|YP_005621315.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552351|gb|ACV75297.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335932324|gb|AEH62864.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 219
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
LA+ C + + P +VHRLDRD+SG L++ R L F +
Sbjct: 40 LASLC--FGFKRWPSIVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQ------------ 85
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
+++ YWA++ G P ++G+I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 --VKKCYWAILEGVPEKNEGIIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEIL 137
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G + + P TGR HQLRVH A LG PIVGD YG
Sbjct: 138 AKN-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYG 177
>gi|389856694|ref|YP_006358937.1| RluA family pseudouridine synthase [Streptococcus suis ST1]
gi|353740412|gb|AER21419.1| pseudouridine synthase, RluA family [Streptococcus suis ST1]
Length = 297
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 27/160 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + T L + ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS--------------LRKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG-YTWLKL 147
+GVI AP+G+ D K +T + AVTR+QV++ C G YT ++L
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE--CFGDYTLVEL 220
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGW-QTHRKWKQF 186
+ TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 221 TLETGRTHQIRVHMA-YIGHPVAGDEAYGARKTLKGHGQF 259
>gi|56551401|ref|YP_162240.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
gi|59802982|sp|O66114.2|Y505_ZYMMO RecName: Full=Uncharacterized RNA pseudouridine synthase ZMO0505;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|56542975|gb|AAV89129.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
Length = 219
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
LA+ C + + P +VHRLDRD+SG L++ R L F +
Sbjct: 40 LASLC--FGFKRWPSIVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQ------------ 85
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
+++ YWA++ G P ++G+I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 --VKKCYWAILEGVPEKNEGIIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEIL 137
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G + + P TGR HQLRVH A LG PIVGD YG
Sbjct: 138 AKN-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYG 177
>gi|375130396|ref|YP_004992496.1| ribosomal large subunit pseudouridine synthase C [Vibrio furnissii
NCTC 11218]
gi|315179570|gb|ADT86484.1| ribosomal large subunit pseudouridine synthase C [Vibrio furnissii
NCTC 11218]
Length = 316
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L S FRE
Sbjct: 115 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLIAKKRSALRQLQSQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYFALVMGEWKSQCKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFKILEKFADA-TLVQASPITGRTHQIRVHT-QYVGHPIAWDDRYG 261
>gi|170751707|ref|YP_001757967.1| pseudouridine synthase [Methylobacterium radiotolerans JCM 2831]
gi|170658229|gb|ACB27284.1| pseudouridine synthase [Methylobacterium radiotolerans JCM 2831]
Length = 224
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG L +GR + L K FS S ++
Sbjct: 45 ALRFGLPRRPEAAHRLDRDTSGCLALGRHAKALARL-----GKLFSGSA---------VE 90
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
+ YWA+V G P +G I PL + +SD + ++T ++V+
Sbjct: 91 KTYWAIVAGGPAGEEGSIDLPLAR------RSDDPRSWWMKADPAGDPSLTHWRVLG-RA 143
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 192
G TWL+L P+TGR HQLRVHCA G PI+GD YG H LS
Sbjct: 144 GGRTWLELKPVTGRTHQLRVHCAAS-GWPILGDAVYGGAPRGSALHLHARALS 195
>gi|269102256|ref|ZP_06154953.1| ribosomal large subunit pseudouridine synthase C [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162154|gb|EEZ40650.1| ribosomal large subunit pseudouridine synthase C [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 344
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 143 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRRLQEQFRN 199
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S ++APL K V++ I VN +
Sbjct: 200 KT--------------VQKYYFALVMGEWKASCKKVTAPLLKNEVNS-----IVRVNPN- 239
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ H T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 240 ---GKPSDTRFKVLE-RFHQATLVQASPVTGRTHQIRVHC-QYTGHPIAWDDRYG 289
>gi|392376177|ref|YP_003208010.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
gi|258593870|emb|CBE70211.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
Length = 314
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 23/156 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+++SG++V+ +T T+ L + F+ R +Q+ Y ALV
Sbjct: 133 PGIVHRLDKETSGVMVVAKTDTAMASLATQFK--------------GRRVQKTYIALV-- 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G + P G++ D G+ +R + + AVT Y+VIK G T L+L
Sbjct: 177 -----HGEVKQPQGQIAADIGRHERDRKRMAVRTRKGREAVTNYRVIK-RLGGLTLLELQ 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 184
P TGR HQ+RVH + + G P+VGD YG + +K +
Sbjct: 231 PQTGRTHQIRVHLSAI-GHPVVGDKVYGGRREKKCR 265
>gi|170741578|ref|YP_001770233.1| pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168195852|gb|ACA17799.1| pseudouridine synthase [Methylobacterium sp. 4-46]
Length = 228
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + P HRLDRD+SG L +GR + L +F + +
Sbjct: 44 ALRFGLPRRPEAAHRLDRDTSGCLALGRHAKALARLGQLFAQGHA--------------R 89
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
+ YWALV G P +G I L + D R + D + A+TR+++ S
Sbjct: 90 KTYWALVDGAPAAEEGEIDLALARRSEDP----RSWWMRADP--AGDPALTRWRLRGRSP 143
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK--QFHPSDLS 192
G WL+L P+TGR HQLRVHCA +G PI GD YG R Q H LS
Sbjct: 144 EGGAWLELEPVTGRTHQLRVHCA-AMGWPIRGDAVYGAAPRRGGPGLQLHARSLS 197
>gi|224024462|ref|ZP_03642828.1| hypothetical protein BACCOPRO_01187 [Bacteroides coprophilus DSM
18228]
gi|224017684|gb|EEF75696.1| hypothetical protein BACCOPRO_01187 [Bacteroides coprophilus DSM
18228]
Length = 547
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 88/172 (51%), Gaps = 26/172 (15%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y S+ P LVHRLD D+SG+L+ + + L ++F E R +++ Y
Sbjct: 382 YPESDSPLLVHRLDMDTSGLLLAAKDKNIHQCLQALF--------------ETRQIRKRY 427
Query: 83 WALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGY 142
AL+ G PR +G I PL SDR N ++ + AVTR++V + S G
Sbjct: 428 TALLQGNPRQDEGTIDLPLCPDF-----SDRPRQQVNWEL--GKKAVTRFRVEERSG-GT 479
Query: 143 TWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 192
T + PLTGR HQLRVH A E L +PI+GD YG Q R + H ++L
Sbjct: 480 TRVSFWPLTGRTHQLRVHAAHPEGLDSPILGDPLYGNQADRLY--LHAAELE 529
>gi|149911608|ref|ZP_01900220.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
gi|149805329|gb|EDM65342.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
Length = 317
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 96/178 (53%), Gaps = 28/178 (15%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG L++ + +++ LH
Sbjct: 112 MAVHGGSGLSFGLIEGLRAIRPDSRFLE---LVHRLDRDTSGCLLVAKKRSTLKALHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGT-PRCSKGVISAPLGKVVVDNGKSDRITVVN 118
R KT +++ Y ALV G PR S+ +++APL K V +G +R+ V+
Sbjct: 169 RLKT--------------MRKDYQALVAGAWPRSSR-IVNAPLLKNTVSSG--ERLVRVD 211
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ + + TR+ +I+ HG T ++ SP+TGR HQ+RVH G PI D KYG
Sbjct: 212 SE----GKESQTRFSIIQRYEHG-TLVQASPITGRTHQIRVHALHA-GHPIACDDKYG 263
>gi|187779872|ref|ZP_02996345.1| hypothetical protein CLOSPO_03468 [Clostridium sporogenes ATCC
15579]
gi|187773497|gb|EDU37299.1| pseudouridine synthase, RluA family [Clostridium sporogenes ATCC
15579]
Length = 305
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L + F+E + S R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDISHNNLAAQFKEHSIS--------------RVYMALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G I AP+G+ VD K + VV + ++AVT Y+VI+ +T ++
Sbjct: 177 IIKDGQGTIEAPIGRHPVDRIK---MAVVKD-----GRYAVTHYKVIE-RFKNHTLVECK 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|347761118|ref|YP_004868679.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter xylinus NBRC 3288]
gi|347580088|dbj|BAK84309.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter xylinus NBRC 3288]
Length = 251
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 26/152 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L HRLD+D++G LV+ + + + ++ F+A + D YWA+V G
Sbjct: 63 PWLAHRLDQDTAGCLVVALRKQAL-----VAAQECFAAGRVDKT---------YWAIVQG 108
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP----SCHGYTW 144
P GV+ APL +V + G+ R+ V + Q A TR++V+ + H +W
Sbjct: 109 APAGPSGVVDAPLARV--EQGRQWRMQVARD-----GQPARTRWRVLATGRDDAGHPISW 161
Query: 145 LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L+L TGR HQ R HCA LG PI+GD +YG
Sbjct: 162 LELVLETGRTHQARAHCA-ALGCPILGDGRYG 192
>gi|87118928|ref|ZP_01074826.1| ribosomal large subunit pseudouridine synthase C [Marinomonas sp.
MED121]
gi|86165319|gb|EAQ66586.1| ribosomal large subunit pseudouridine synthase C [Marinomonas sp.
MED121]
Length = 322
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 23/175 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ + E+ + + S LVHRLDRD+SG++++ + ++ LH+ R
Sbjct: 116 LAVHGGSGLNFGLVEVVRQLRSKEKS--IELVHRLDRDTSGLIMISKKRSVLKQLHAALR 173
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK +Q+ Y ALV G+ K ++APL K + +G +RI V+ +
Sbjct: 174 EKEG-------------VQKTYQALVYGSWPKRKQQVNAPLLKNELKSG--ERIVKVHTE 218
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ ++TR+++++ GY+ ++ P+TGR HQ+RVH G PIVGD KY
Sbjct: 219 ----GKESLTRFKLLR-QFEGYSLVECEPVTGRTHQIRVHTLHA-GYPIVGDDKY 267
>gi|343501913|ref|ZP_08739780.1| ribosomal large subunit pseudouridine synthase C [Vibrio tubiashii
ATCC 19109]
gi|418480458|ref|ZP_13049516.1| ribosomal large subunit pseudouridine synthase C [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342816342|gb|EGU51241.1| ribosomal large subunit pseudouridine synthase C [Vibrio tubiashii
ATCC 19109]
gi|384571850|gb|EIF02378.1| ribosomal large subunit pseudouridine synthase C [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 314
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S ++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKASCKKVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++I+ + T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKASETRFKIIEKFANA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|117925074|ref|YP_865691.1| ribosomal large subunit pseudouridine synthase C [Magnetococcus
marinus MC-1]
gi|117608830|gb|ABK44285.1| ribosomal large subunit pseudouridine synthase C [Magnetococcus
marinus MC-1]
Length = 328
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 1 MPVQGGIGIRRSI-DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+PV GG G + + D + A+ L HRLD+++SG+L+ G + +L
Sbjct: 116 IPVHGGSGHQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLLFGLRPRAVRLLTEAM 175
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
RE + + Y LV G P +GVI+ PL K V G +R+ VV
Sbjct: 176 RENQVTKT--------------YLTLVQGVPAARQGVINQPLSKGNVRGG--ERMVVVEQ 219
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
Q AVT Y+V++ S + L++ TGR HQ+RVH + LG P+ GD KYG +
Sbjct: 220 ----GGQRAVTHYRVLR-SYGVASLLEVQLETGRTHQIRVHM-QWLGHPVAGDGKYGDKA 273
Query: 180 HRKW 183
KW
Sbjct: 274 FNKW 277
>gi|429769328|ref|ZP_19301441.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
gi|429187342|gb|EKY28258.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
Length = 241
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 19/148 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLDRD+SG+++ +T+ +A + + F Q+ Y ALV
Sbjct: 64 PELVHRLDRDTSGVILAAKTKPAAGFFGKAMQMRKF--------------QKTYLALVAA 109
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I++ L + + G+ + VV D AQ A + Y+ + S G ++LS
Sbjct: 110 APEPKSGRITSALRREEI--GRESYMRVVAFDAP-GAQGAASGYRTLASSQDGAV-VELS 165
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQLRVH A + G P+VGD +YG
Sbjct: 166 PETGRMHQLRVHMASI-GRPLVGDVRYG 192
>gi|329850247|ref|ZP_08265092.1| RNA pseudouridylate synthase family protein [Asticcacaulis
biprosthecum C19]
gi|328840562|gb|EGF90133.1| RNA pseudouridylate synthase family protein [Asticcacaulis
biprosthecum C19]
Length = 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG G ++D++ + P+LVHRLDRD+SGIL++ +TQ + + L +
Sbjct: 66 QGGRGDGHNLDDMM-WAFAKSNGKRPKLVHRLDRDTSGILLVAKTQPAVSFLGKAMIRRA 124
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
F + Y A+V G + + APL + V R+ ++ +
Sbjct: 125 F--------------DKTYLAIVSGAELPDRFTVDAPLRREEVGREAWSRVCAPDHPDAL 170
Query: 124 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+AQ T ++V+K ++ SP TGR HQ+RVH A LGTPI GD +YG
Sbjct: 171 TAQ---TTFEVLK-RGDDAALIQCSPHTGRMHQIRVHLAH-LGTPIAGDVRYG 218
>gi|406997571|gb|EKE15603.1| hypothetical protein ACD_11C00118G0003 [uncultured bacterium]
Length = 310
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 20/152 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ + + S L +IF E R +++ Y ALV G
Sbjct: 134 PGIVHRLDKDTSGLVVVAKNKKSFDELKNIFAE--------------RQIEKKYVALVFG 179
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G+I PL + N K +I + ++AVT YQV+K Y ++
Sbjct: 180 NLQNKEGIIDKPLTRAT--NFKKQKIATGKSRG--KIRNAVTTYQVLKSYVE-YDLIEAI 234
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
P TGR HQ+R H + + G PIVGD KY + +
Sbjct: 235 PKTGRMHQIRAHFSSI-GHPIVGDEKYFLKKY 265
>gi|325106295|ref|YP_004275949.1| ribosomal large subunit pseudouridine synthase D [Pedobacter
saltans DSM 12145]
gi|324975143|gb|ADY54127.1| ribosomal large subunit pseudouridine synthase D [Pedobacter
saltans DSM 12145]
Length = 235
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 25/170 (14%)
Query: 12 SIDELAATCLTYDYSEPPR----LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSAS 67
S+DE+ + + Y +P +VHRLDR SG+++ +T + ++ +F+E
Sbjct: 40 SLDEMVKSYIAEKYKKPNGAFLGVVHRLDRPVSGVILFAKTSKALDRVNKMFKE------ 93
Query: 68 KEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 127
R + + YWA+V P +S L +V N + + IT N ++ + Q
Sbjct: 94 --------REMHKTYWAVVKNKPSK----MSGNLVHWLVKNPRKN-ITTAYNQEVPNGQR 140
Query: 128 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
A ++VI GY +++ P+TGR HQ+RV A LG+PIVGD KYG+
Sbjct: 141 AELNFKVIG-HIDGYYVIEVDPITGRPHQIRVQMAS-LGSPIVGDNKYGY 188
>gi|255036339|ref|YP_003086960.1| RluA family pseudouridine synthase [Dyadobacter fermentans DSM
18053]
gi|254949095|gb|ACT93795.1| pseudouridine synthase, RluA family [Dyadobacter fermentans DSM
18053]
Length = 343
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 21/148 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHR+D+D+SG+LV+ +T+ + T L S F + + ++R Y AL+ G
Sbjct: 148 PGLVHRIDKDTSGLLVIAKTEFAMTFLASQFADHS--------------IERTYHALIWG 193
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ KG I+ +G+ D D V+ Q +HAVT Y+VIKP + + +K +
Sbjct: 194 EPKAEKGTITGHVGRSARDRRVMD--VYVDGSQ---GKHAVTHYEVIKPLRY-VSLIKCN 247
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+R H + G PI D YG
Sbjct: 248 LETGRTHQIRAHMKHI-GHPIFNDPMYG 274
>gi|410663306|ref|YP_006915677.1| pseudouridine synthase Rlu family protein [Simiduia agarivorans SA1
= DSM 21679]
gi|409025663|gb|AFU97947.1| pseudouridine synthase Rlu family protein [Simiduia agarivorans SA1
= DSM 21679]
Length = 321
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 15/146 (10%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDR++SG++++ + +T+ L + FREK+ +N + K +L + Y ALV G
Sbjct: 138 LVHRLDRETSGVILVAKKRTALKHLQAQFREKS------ENLSLKGVL-KTYLALVDGQW 190
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
K I APL + + NG DR+ V+++ + + T + V++ G T ++ P+
Sbjct: 191 PLEKSRIDAPLLRTELPNG--DRLVKVSDE----GKPSRTEFSVVQ-VLRGATLVQARPV 243
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + G P++GD KYG
Sbjct: 244 TGRTHQIRVH-ARIAGCPLLGDEKYG 268
>gi|114775485|ref|ZP_01451053.1| ribosomal large subunit pseudouridine synthase C [Mariprofundus
ferrooxydans PV-1]
gi|114553596|gb|EAU55977.1| ribosomal large subunit pseudouridine synthase C [Mariprofundus
ferrooxydans PV-1]
Length = 315
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 27/179 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G + E D RL HRLDRD+SG+L+M + + L FR
Sbjct: 112 MVVHGGSGHEAGLIEALKQSRGLD---DLRLAHRLDRDTSGVLLMAKHLDALRRLTESFR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E R +Q+ Y+AL+ G P G +S+ L K VV G+ VV+++
Sbjct: 169 E--------------RDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGER---MVVDSE 211
Query: 121 QIMSAQHAVTRYQV-IKPSCHG--YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + +VT YQV I+ HG Y + L+P +GR HQLRV G PI+GD KYG
Sbjct: 212 E---GKASVTDYQVMIEYERHGFPYAMVALNPHSGRTHQLRVQLQHE-GHPILGDGKYG 266
>gi|441504931|ref|ZP_20986923.1| Ribosomal large subunit pseudouridine synthase C [Photobacterium
sp. AK15]
gi|441427513|gb|ELR64983.1| Ribosomal large subunit pseudouridine synthase C [Photobacterium
sp. AK15]
Length = 315
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRKLQEQFRN 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S ++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKASCKKVTAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++VI+ T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 211 ---GKPSDTRFKVIE-RLDQATLIQASPVTGRTHQIRVHC-QYTGHPIAWDDRYG 260
>gi|117926248|ref|YP_866865.1| ribosomal large subunit pseudouridine synthase A [Magnetococcus
marinus MC-1]
gi|117610004|gb|ABK45459.1| ribosomal large subunit pseudouridine synthase A [Magnetococcus
marinus MC-1]
Length = 224
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 1 MPVQGGIGIRRSI-DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
MP+ G G ++ D L C ++ +PP VHRLD +SG LV+GR + L ++F
Sbjct: 29 MPIYRGPGGGETLADHLPQLC--FERGKPPAAVHRLDSATSGCLVLGRHKGMRRSLSNLF 86
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ +++ YWA+V G P +G+I PL D G R V
Sbjct: 87 AQGG--------------VEKLYWAVVQGRPLMDQGLIELPL----QDVGWPGRPRVKVR 128
Query: 120 DQIMSAQHAVTRYQVIKPSCHGY----TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
M + T +QV+ GY T L L P TGR HQLRVHCA +G PIVGD Y
Sbjct: 129 ---MGGKWGRTLFQVM-----GYGQNETLLALMPQTGRTHQLRVHCA-AMGCPIVGDPLY 179
Query: 176 G 176
G
Sbjct: 180 G 180
>gi|260910942|ref|ZP_05917583.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 472 str. F0295]
gi|260634933|gb|EEX52982.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 472 str. F0295]
Length = 537
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 26/165 (15%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y ++ P +VHRLD+D+SG++++ +T+ L F E+++ +KR Y
Sbjct: 372 YPDADSPLIVHRLDQDTSGLMLIAKTKEMHRTLQLAF---------ENHEVKKR-----Y 417
Query: 83 WALVVGT--PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
A++ G P +G IS PL +D + +V+ + + AVTRY+VI
Sbjct: 418 VAVLDGLLPPERQQGEISLPLNSNYLDRPRQ----MVD---WLQGKPAVTRYEVIGQE-E 469
Query: 141 GYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW 183
G T + L PLTGR HQLRVHCA + L PI+GD YG + HR +
Sbjct: 470 GRTIVALYPLTGRTHQLRVHCAHPDGLNLPILGDPLYGRKAHRMY 514
>gi|189485617|ref|YP_001956558.1| pseudouridylate synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287576|dbj|BAG14097.1| pseudouridylate synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 296
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 28/178 (15%)
Query: 4 QGGIGIRRSIDELAATCLT--YDYSE---PPRLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+ GI + S L+ T L YS P L+HRLD+D+SG++V +T+ +
Sbjct: 93 RSGIVVHPSYGHLSGTLLNALMGYSAGKYNPYLIHRLDKDTSGVIVFAKTEKAK------ 146
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
S SK+ +KR++++ Y+A V G ++G+I APLG+ + K+ ++ VN
Sbjct: 147 -----ISISKQL---QKRVVKKIYYAAVKGVIAENRGIIKAPLGR----SPKNRKLVSVN 194
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ + A+T ++VI+ YT LK+ +TGR HQ+R H + + P++GD +YG
Sbjct: 195 P---LAKKVAITEFKVIERK-DDYTLLKVRIITGRTHQIRSHM-KYINHPVIGDKQYG 247
>gi|323448015|gb|EGB03919.1| hypothetical protein AURANDRAFT_33292 [Aureococcus anophagefferens]
Length = 259
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 18/148 (12%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
L HRLDRD+SG++V +T+ + L F E R +++ Y V+G P
Sbjct: 82 LAHRLDRDTSGLVVAAKTKRALRSLSMAF--------------EAREVEKSYVGAVLGWP 127
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ G + P+GKV D G +R+ VV + + + T + +++ G + L L P+
Sbjct: 128 EATFGTVDEPIGKVKTDAGH-NRVAVVA--EADGGRRSRTNWALLEKRDDGSSLLSLQPV 184
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR QLRVHCA ++G P++GD +G +
Sbjct: 185 TGRSQQLRVHCA-LIGLPLLGDALHGTE 211
>gi|365539272|ref|ZP_09364447.1| ribosomal large subunit pseudouridine synthase C [Vibrio ordalii
ATCC 33509]
Length = 315
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 172 KT--------------IQKYYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++ ++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 212 ---GKASETRFKTLEQFAQA-TLVQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 261
>gi|451819459|ref|YP_007455660.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785438|gb|AGF56406.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 303
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + L ++ + ++R Y+ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDEAHNKLSEQLKDHS--------------MKREYYALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ KG+I PL + K DR+ + + + AVT Y+V++ +G++ +K
Sbjct: 177 RIKNDKGIIDKPLAR-----NKKDRLKM---GIVEGGKRAVTHYEVLE-RYNGFSLIKCV 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 228 LETGRTHQIRVHMASI-GFPLVGDPLYGFKKQK 259
>gi|410611272|ref|ZP_11322371.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
gi|410169123|dbj|GAC36260.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
Length = 317
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 26/175 (14%)
Query: 3 VQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ I+ L A + E LVHRLDRD+SG L++ + +++ LH R+
Sbjct: 113 VHGGSGLSFGVIEALRALRPQQKFLE---LVHRLDRDTSGCLLIAKKRSALKSLHEQLRD 169
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
R + + Y ALV G ++ + APL K + +G +R+ +VN +
Sbjct: 170 --------------RKVDKRYQALVAGEWPANRFKVKAPLLKNTLKSG--ERVVLVNEE- 212
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TRY++++ H T ++ SP+TGR HQ+RVHC G PI D +YG
Sbjct: 213 ---GKPSETRYRILESFNHA-TLVEASPITGRTHQIRVHCLHA-GHPIAADNRYG 262
>gi|88798806|ref|ZP_01114389.1| ribosomal large subunit pseudouridine synthase C [Reinekea
blandensis MED297]
gi|88778569|gb|EAR09761.1| ribosomal large subunit pseudouridine synthase C [Reinekea
blandensis MED297]
Length = 313
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 55/235 (23%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G++ I+ L A + + E LVHRLDRD+SG++++ + + S T+L F
Sbjct: 107 LAVHGGSGLKLGLIEALRAQRESEPFLE---LVHRLDRDTSGVVLVAKKRKSLTLLQDEF 163
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+KT +++ YW LV G V+ APL + R++V N
Sbjct: 164 RQKTR-------------VRKTYWCLVKGHWPDGCSVVDAPLLRHEESASGERRVSVQAN 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ + T ++V+K W++ P+TGR HQ+RVHC + +G PI+GD KY
Sbjct: 211 -----GKPSRTHFRVLK-QYQDCAWVEALPITGRTHQIRVHC-QYVGCPILGDDKY---- 259
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN 234
+DS E K GL+ RL LH ++TLP+
Sbjct: 260 -------------QDSEAESLASK---LGLN-----------RLFLHAAQLTLPH 287
>gi|27366288|ref|NP_761816.1| ribosomal large subunit pseudouridine synthase C [Vibrio vulnificus
CMCP6]
gi|320156795|ref|YP_004189174.1| ribosomal large subunit pseudouridine synthase C [Vibrio vulnificus
MO6-24/O]
gi|34395774|sp|Q8D8G1.1|RLUC_VIBVU RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|27362489|gb|AAO11343.1| Ribosomal large subunit pseudouridine synthase C [Vibrio vulnificus
CMCP6]
gi|319932107|gb|ADV86971.1| ribosomal large subunit pseudouridine synthase C [Vibrio vulnificus
MO6-24/O]
Length = 315
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++VI+ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVIEKFPQA-TLVQASPITGRTHQIRVHT-QYSGHPIAWDDRYG 260
>gi|91200050|emb|CAJ73092.1| similar to ribosomal large subunit pseudouridine synthase D
[Candidatus Kuenenia stuttgartiensis]
Length = 335
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 44/233 (18%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLDRD+SG++++ ++ + + F EKR++++ Y+A+V G
Sbjct: 144 IVHRLDRDTSGVMLVIKSDAVHSHIAMQF--------------EKRLVKKEYFAVVEGEV 189
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
I+ P+G+ VD K V D + ++A + Y+VI+ GYT +K+ P
Sbjct: 190 AFDSNEINMPIGRHRVDRQK----MAVRRD---TGKNATSVYEVIE-RFRGYTLVKIMPK 241
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLD 210
TGR HQ+RVH + +G P+V D Y K+ SDL E P E
Sbjct: 242 TGRTHQIRVHM-QAIGHPVVADEMYS-----KYNACFRSDLL--GKERAPDE-------- 285
Query: 211 LESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL-ETLKLVAPL 262
GSI+E+Q LH H E P +++ + Q+ D+S L L+ + PL
Sbjct: 286 ---GSIIERQA-LHAHRIEFFHPILNKQM-AFQVDMAEDISFLVSALRELRPL 333
>gi|51011075|ref|NP_001003495.1| RNA pseudouridylate synthase domain-containing protein 4 [Danio
rerio]
gi|82182079|sp|Q6DBR0.1|RUSD4_DANRE RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|50418114|gb|AAH78405.1| Zgc:92006 [Danio rerio]
Length = 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPP---RLVHRLDRDSSGILVMGRTQTSATVLH 56
+P+ GIR SI E L D P L H+L+++++G+L++ +T+ +A +
Sbjct: 107 VPLHNINGIRNSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQ 166
Query: 57 SIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP---------------- 100
++ + ++ Y A+ VG P S+GVI P
Sbjct: 167 TLIQSHK--------------VEMKYLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMA 212
Query: 101 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
L + N D +T V + A AVTRYQV+ + G + ++L PLTG K+QLRVH
Sbjct: 213 LSPLFKVNEDGDGVTRVRAHR--QAHAAVTRYQVLD-NTSGCSLVELQPLTGVKNQLRVH 269
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
A L PI+GD+KY W + P +++P+ GL L
Sbjct: 270 MALALTCPILGDHKYSH-----WSKLAP--------QKLPEGTLRRLGLVQSKTRYLP-- 314
Query: 221 PRLHLHCKEMTLP 233
LHLH + + LP
Sbjct: 315 --LHLHSRRIVLP 325
>gi|350588631|ref|XP_003482692.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Sus scrofa]
Length = 345
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 59/273 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 114 LPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 173
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+FR + + + YWA+ V P S GV+ P+ + V
Sbjct: 174 LFRTRQVA--------------KKYWAITVRVPVPSAGVVDIPIIEKEV----------- 208
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
Q AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 209 --------QVAVTQYQVLS-STLSSALLELQPVTGIKHQLRVHLSFGLDCPILGDHKYS- 258
Query: 178 QTHRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 235
W + P LS ++ +P+ K H LHLH +++ LP +
Sbjct: 259 ----DWNRLAPQKLSVGVLKKLGLPQSKARHIP--------------LHLHARQLILPAL 300
Query: 236 SQAIQKVQLSSGCDVSKLETL-KLVAPLPSHMQ 267
+++ L + +L +L +PSH Q
Sbjct: 301 QSRKEELNLVCKPPRYFVHSLRRLGLKMPSHDQ 333
>gi|323499352|ref|ZP_08104328.1| ribosomal large subunit pseudouridine synthase C [Vibrio
sinaloensis DSM 21326]
gi|323315537|gb|EGA68572.1| ribosomal large subunit pseudouridine synthase C [Vibrio
sinaloensis DSM 21326]
Length = 314
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++I+ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKIIEKFSEA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|148977658|ref|ZP_01814234.1| 23S rRNA ribosomal pseudouridine synthase [Vibrionales bacterium
SWAT-3]
gi|145963173|gb|EDK28441.1| 23S rRNA ribosomal pseudouridine synthase [Vibrionales bacterium
SWAT-3]
Length = 314
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKASETRFKVLE-KFKDATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|345870201|ref|ZP_08822155.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
gi|343922143|gb|EGV32848.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
Length = 308
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPR---LVHRLDRDSSGILVMGRTQTSATVLHS 57
+ V GG G+ + E + + P R LVHRLDR++SG LV+ + +++ LH
Sbjct: 98 LAVHGGSGLSYGLIE------SLRQARPGRELELVHRLDRETSGCLVISKRRSALRELHQ 151
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
+ RE N KR Y AL VG K V+ APL K V+ G +R+ V
Sbjct: 152 LIRE---------NGMTKR-----YRALFVGDLAREKLVVDAPLKKNVLQGG--ERVVRV 195
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
+ + A+ R + + +T ++ +TGR HQ+RVH A LGTP+ GD KYG
Sbjct: 196 DQAEGKPARTIFRRLRRLTSKGRVFTLVEAELVTGRTHQIRVHAAH-LGTPLAGDPKYGD 254
Query: 178 QT-HRKWKQF 186
+ +R+ K+
Sbjct: 255 EAMNRELKRL 264
>gi|417948148|ref|ZP_12591296.1| ribosomal large subunit pseudouridine synthase C [Vibrio splendidus
ATCC 33789]
gi|342810178|gb|EGU45271.1| ribosomal large subunit pseudouridine synthase C [Vibrio splendidus
ATCC 33789]
Length = 314
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKASETRFKVLE-KFKDATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|359399277|ref|ZP_09192281.1| pseudouridylate synthase [Novosphingobium pentaromativorans US6-1]
gi|357599317|gb|EHJ61031.1| pseudouridylate synthase [Novosphingobium pentaromativorans US6-1]
Length = 232
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 2 PVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
P GG+ + ID L + P VHRLDRD+SG L++ R +
Sbjct: 26 PRAGGVSLDDYID-----TLKLGFQREPAPVHRLDRDTSGCLLLARNPKAL--------- 71
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
K F+A+ E+R++++ Y +V G P +G I+ L KV T + +
Sbjct: 72 KRFAAA-----FEERLVEKRYLGIVTGVPADDEGTIALSLSKVS---------TAKDGWR 117
Query: 122 IMSAQH---AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
++ A+ AVT ++ + + G T ++ P TGR HQ+RVH A LG P++GD YG +
Sbjct: 118 MIPARKGKPAVTHWRKLD-TRDGLTLIEFRPETGRTHQIRVHAASGLGMPLLGDPVYGTK 176
Query: 179 THRKWKQFHPSDLSKDSNEEIP 200
H + L+ E+ P
Sbjct: 177 KAGARTMLHAAALTVPRGEKAP 198
>gi|88859600|ref|ZP_01134240.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas tunicata D2]
gi|88818617|gb|EAR28432.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas tunicata D2]
Length = 320
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 38/220 (17%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E T + + LVHRLDRD+SG L++ + ++ LH R
Sbjct: 111 MAVHGGSGLSYGLIEAMRTLRPQETA--LELVHRLDRDTSGCLLISKKRSVLKSLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +Q+ YWALV G ++ PL K + +G +R+ V+++
Sbjct: 169 EKT--------------MQKNYWALVSGEWLSKDKNVTEPLRKNTLQSG--ERVVRVDHE 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQT 179
+ A H TR++V++ G T ++ SP+TGR HQ+RVH + G PI D KYG +
Sbjct: 213 E-GKASH--TRFRVLERFRDG-TLVQASPVTGRTHQIRVHT-QCKGHPIACDDKYGDTEF 267
Query: 180 HRKWKQF-------HPSDLS-------KDSNEEIPKEKTL 205
+K K F H DL+ +D E P ++TL
Sbjct: 268 DQKMKGFGLNRLFLHAHDLTFYHPKLEQDMTVEAPLDETL 307
>gi|330995758|ref|ZP_08319655.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
gi|329574488|gb|EGG56053.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
Length = 522
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 30/158 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLD D+SG+L++ + + L +F E R +++ Y AL+ G
Sbjct: 363 PLLVHRLDMDTSGVLLIAKDPETHRQLQQLF--------------ETRHIKKRYVALLDG 408
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVTRYQVIKPSCHGYTWL 145
T +G I PL D + Q++S H AVTR++V+ SC G T +
Sbjct: 409 TVTDDEGFIRLPLCPNPDDRPR----------QMVSTAHGKAAVTRFEVLSRSC-GQTRV 457
Query: 146 KLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHR 181
PLTGR HQLRVH A E L TPIVGD YG + R
Sbjct: 458 AFYPLTGRTHQLRVHAAHPEGLDTPIVGDNLYGRRASR 495
>gi|152996325|ref|YP_001341160.1| RluA family pseudouridine synthase [Marinomonas sp. MWYL1]
gi|150837249|gb|ABR71225.1| pseudouridine synthase, RluA family [Marinomonas sp. MWYL1]
Length = 323
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 21/145 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG++++ + + LH+ REK +Q+ Y ALV G+
Sbjct: 144 LVHRLDRDTSGLIMVAKKRAVLKELHTALREKEG-------------VQKTYLALVYGSW 190
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
K ++APL K + +G +R+ V+ D + ++TR+++++ GY+ ++ P+
Sbjct: 191 PKRKLQVNAPLLKNELQSG--ERVVRVHTD----GKESLTRFKLVR-QFEGYSLVECEPV 243
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH + G PIVGD KY
Sbjct: 244 TGRTHQIRVHT-QYAGYPIVGDEKY 267
>gi|344923325|ref|ZP_08776786.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 233
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 22/156 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P L HRLD +SG LV+GR + L +F +++
Sbjct: 47 LQFGLPNLPGLGHRLDASTSGCLVLGRHPKALRRLGILFSGGH--------------IKK 92
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWA+V G ++G+I PL K+ ++ KS+ V+ + Q AVT+Y+V+ +
Sbjct: 93 TYWAVVTGKLPEAQGIIDLPLAKM--NDRKSNWWMKVDAN----GQKAVTQYKVLGETAQ 146
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Y++++L+P+TGR HQLRVH E LG PIVGD YG
Sbjct: 147 -YSFVELTPITGRTHQLRVHL-EALGCPIVGDPVYG 180
>gi|206603460|gb|EDZ39940.1| pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II '5-way CG']
Length = 340
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 23/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG++V+G+++T L + F++++ S + Y ALV G
Sbjct: 160 LVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVS--------------KKYLALVKGIL 205
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+G I+AP+G+ D K V D + ++TRY+V++ Y+ L+++ L
Sbjct: 206 PKKRGEINAPIGRSTHDRKK----FAVRQD----GKPSLTRYRVLETYHENYSLLEVTLL 257
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH LG P++GD YG
Sbjct: 258 TGRTHQIRVHFRH-LGFPLLGDAVYG 282
>gi|334142863|ref|YP_004536071.1| pseudouridylate synthase [Novosphingobium sp. PP1Y]
gi|333940895|emb|CCA94253.1| pseudouridylate synthase [Novosphingobium sp. PP1Y]
Length = 232
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 2 PVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
P GG+ + ID L + P VHRLDRD+SG L++ R +
Sbjct: 26 PRAGGVSLDDYID-----TLKLGFQREPAPVHRLDRDTSGCLLLARNPKAL--------- 71
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
K F+A+ E+R++++ Y +V G P +G I+ L KV T + +
Sbjct: 72 KRFAAA-----FEERLVEKRYLGIVTGVPAEDEGTIALSLSKVS---------TAKDGWR 117
Query: 122 IMSAQH---AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
++ A+ AVT ++ + + G T ++ P TGR HQ+RVH A LG P++GD YG +
Sbjct: 118 MIPARKGKPAVTHWRKLD-TRDGLTLIEFRPETGRTHQIRVHAASGLGMPLLGDPVYGTK 176
Query: 179 THRKWKQFHPSDLSKDSNEEIP 200
H + L+ E+ P
Sbjct: 177 KAGARTMLHAAALTVPRGEKAP 198
>gi|374814776|ref|ZP_09718513.1| ribosomal large subunit pseudouridine synthase C [Treponema
primitia ZAS-1]
Length = 219
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 40/181 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ S+D L L+ +YS P LVHRLD+D+SG++++ +T+ +A + IF
Sbjct: 22 LAVQGGEGVGTSLDSL----LSAEYSPRPLLVHRLDKDTSGVILVAKTKEAAALFAGIFA 77
Query: 61 EK---TFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 117
TFS +Q+ Y A+ G P G I L
Sbjct: 78 RPVSVTFS------------VQKQYLAVCAGRPTPESGTIETDL---------------- 109
Query: 118 NNDQIMSAQHAVTRYQVIKPSCH--GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ +A+ A T Y+ I H ++ L+L TGR HQ+R H A + G PI+GD KY
Sbjct: 110 --EIRGAARKAKTSYRRINGVSHLSDFSLLELELGTGRMHQIRRHLASI-GHPILGDDKY 166
Query: 176 G 176
G
Sbjct: 167 G 167
>gi|433772820|ref|YP_007303287.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433664835|gb|AGB43911.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 351
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 24/155 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+++SG++V+ +T + L F + + L+R Y ALV G
Sbjct: 152 PGIVHRLDKETSGVMVVAKTDRAHKALSEAFADHGLTGD----------LERAYLALVWG 201
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRI-TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKL 147
P+ G I APLG+ SDR+ V + A+HAVTR+ V + G
Sbjct: 202 IPQRPTGTIDAPLGRA------SDRVRRAVVPEGRDDARHAVTRFAVQERFGEGQREFAA 255
Query: 148 SPL------TGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ L TGR HQ+RVH A + G P++GD YG
Sbjct: 256 ASLVECRLETGRTHQIRVHMAHI-GHPVIGDPDYG 289
>gi|78044742|ref|YP_360337.1| ribosomal large subunit pseudouridine synthase A [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996857|gb|ABB15756.1| ribosomal large subunit pseudouridine synthase, RluA family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 305
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 23/152 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+LV+ + + L +EK R YW +V G
Sbjct: 133 PGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAV--------------REYWTIVHG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G+I P+G+ D K + VV+N + A T Y+V++ G+T ++
Sbjct: 179 YLKNKEGIIDLPIGRHPRDRQK---MAVVSN-----GKTAQTVYKVLEEFNKGFTLIQAK 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
LTGR HQ+RVH + LG P++GD KYG Q +
Sbjct: 231 LLTGRTHQIRVHFS-YLGHPVLGDPKYGHQNN 261
>gi|260889966|ref|ZP_05901229.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
hofstadii F0254]
gi|260860572|gb|EEX75072.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
hofstadii F0254]
Length = 326
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ + + L +F +KT +++ Y A++ G
Sbjct: 150 PGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKT--------------VKKTYLAILKG 195
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I +G+ D ++TV N+ + S + A+T Y+VI +T +K+
Sbjct: 196 KLSQKSGRIVTQIGR---DKNDRKKMTVTND--LNSGKTAITNYEVI-SQTEKFTLVKVH 249
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 192
TGR HQ+RVH LG PI+GD YG K + H L
Sbjct: 250 IETGRTHQIRVHMKH-LGYPILGDSVYGRTDTEKRQMLHAYKLE 292
>gi|420245965|ref|ZP_14749488.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398044520|gb|EJL37336.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 340
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V + + L F + S L+R Y A+V G
Sbjct: 142 PGIVHRLDKDTSGVMVAAKNDIAHRHLADQFADHGRSGP----------LERAYQAVVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRIT-VVNNDQIMSAQHAVTRYQVI-----KPSCHGY 142
PR KG I APLG+ DR V + A+ A+T YQVI KP
Sbjct: 192 RPRGLKGTIDAPLGRA------GDRTKRAVQKEDSSDAREAITHYQVIERFHEKPDATAL 245
Query: 143 TWLKLSPL-TGRKHQLRVHCAEVLGTPIVG--DYKYGWQTHRKWKQFHPSDLSKDSNEEI 199
L L TGR HQ+RVH A + G P++G DY G++T K D +K
Sbjct: 246 AALIECRLETGRTHQIRVHMAHI-GHPLIGDQDYSAGFKT----KANLLPDFAKGVVNRF 300
Query: 200 PKEKTLHFGLDLE---SGSILE 218
P++ F L E +G ++E
Sbjct: 301 PRQALHAFLLAFEHPRTGEVME 322
>gi|392382839|ref|YP_005032036.1| pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877804|emb|CCC98656.1| pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 350
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ + + L F +T S R Y ALV G
Sbjct: 158 PGIVHRLDKDTSGLMVVAKNDRAHHALTEQFSGRTLS--------------RTYQALVWG 203
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P +G I +G+ D K + VV +HA TRY+V++ ++ +
Sbjct: 204 VPSPREGRIEGNIGRSSTDRKK---MAVVTG----GGKHAATRYRVVRSFGTALALVECT 256
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+RVH A + G PIVGD YG + H S L E +E+ + F
Sbjct: 257 LETGRTHQIRVHMAHI-GHPIVGDPLYGKGRAGRAGGKHASALP-----EPDRERFVGF- 309
Query: 209 LDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQR 268
PR LH +T + + ET++ APLP+ ++
Sbjct: 310 ------------PRQALHAVGLTFRHPATG---------------ETVRFQAPLPTDIKD 342
Query: 269 SWDVLNS 275
D L S
Sbjct: 343 LSDFLES 349
>gi|288929792|ref|ZP_06423635.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 317 str. F0108]
gi|288328893|gb|EFC67481.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 317 str. F0108]
Length = 542
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 44/193 (22%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y ++ P +VHRLD+D+SG++++ +T+ L F E+++ +KR Y
Sbjct: 372 YPDTDSPLIVHRLDQDTSGLMIIAKTKEMHRTLQLAF---------ENHEVKKR-----Y 417
Query: 83 WALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
A++ G P +G IS PL +D + +V+ ++ + AVTRY+VI
Sbjct: 418 VAVLDGLLPPEKQRGEISLPLNSNYLDRPRQ----MVD---WLNGKSAVTRYEVIGHE-E 469
Query: 141 GYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW--------------- 183
G T + L PLTGR HQLRVHCA + L PI+GD YG + R +
Sbjct: 470 GRTIVALYPLTGRTHQLRVHCAHPDGLNLPILGDPLYGRKADRMYLHAEVIEVEKLGLRV 529
Query: 184 ---KQFHPSDLSK 193
K FHP L+K
Sbjct: 530 EDDKWFHPQSLNK 542
>gi|260773154|ref|ZP_05882070.1| ribosomal large subunit pseudouridine synthase C [Vibrio
metschnikovii CIP 69.14]
gi|260612293|gb|EEX37496.1| ribosomal large subunit pseudouridine synthase C [Vibrio
metschnikovii CIP 69.14]
Length = 318
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 118 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 174
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + V++APL K +++ I VN +
Sbjct: 175 KT--------------VQKYYFALVMGRWPANVKVVNAPLLKNEINS-----IVRVNPN- 214
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T L+ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 215 ---GKPSETRFRVLEQFAQA-TLLQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 264
>gi|373454836|ref|ZP_09546698.1| RluA family pseudouridine synthase [Dialister succinatiphilus YIT
11850]
gi|371935420|gb|EHO63167.1| RluA family pseudouridine synthase [Dialister succinatiphilus YIT
11850]
Length = 308
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V ++ + VL R QR Y ALV G
Sbjct: 133 PGIVHRLDKDTSGVMVAAKSARAFPVLKEEIRAHE--------------AQRHYLALVHG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI PLG+ V D K D Q + + AVT Y+V + GY++L+L
Sbjct: 179 QMEGNTGVIRLPLGRSVKDRMKWDV-------QPKTGKPAVTHYRV-EEFMPGYSFLELK 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH A +G P+V D YGW+
Sbjct: 231 LETGRTHQIRVHMA-YIGHPVVNDPLYGWK 259
>gi|302382659|ref|YP_003818482.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193287|gb|ADL00859.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
Length = 248
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 19/148 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLDRD+SG+++ +T+ +A+ F K A + L + Y ALV
Sbjct: 64 PELVHRLDRDTSGVILAAKTKPAAS-----FLGKAIQAHR---------LTKTYLALVSA 109
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P +G I+ PL V + G+ + V D AQ + +RY+ + S G ++L
Sbjct: 110 APEPPQGDINVPL--VRQEIGRESYMRVAAFD-TKGAQGSRSRYRTLASSDDG-ALVELQ 165
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQLRVH A + G P++GD +YG
Sbjct: 166 PFTGRMHQLRVHMAHI-GRPLIGDVRYG 192
>gi|118579004|ref|YP_900254.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118501714|gb|ABK98196.1| pseudouridine synthase, RluA family [Pelobacter propionicus DSM
2379]
Length = 306
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 26/152 (17%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
EP R++HRLDR +SG+++ + + +A L F D EKR Y ALV
Sbjct: 125 EPARVIHRLDRGTSGVMLFPKHKRAAAWLSKRF---------HDGQVEKR-----YLALV 170
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK 146
GTP + + P+GK+ S R +V + A+T ++++ SC GY ++
Sbjct: 171 SGTPGQIEWRVDGPIGKIA-----SARYGIV-----AGGRSALTEFRLLAESC-GYALVE 219
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
PLTGR HQ+RVH + G PIVGD YG +
Sbjct: 220 AKPLTGRTHQIRVHL-QSCGLPIVGDGTYGGE 250
>gi|410641164|ref|ZP_11351687.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
chathamensis S18K6]
gi|410139291|dbj|GAC09874.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
chathamensis S18K6]
Length = 318
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG LV+ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPQARFLE---LVHRLDRDTSGCLVIAKKRSALKNLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALVVG ++ ++APL K ++ +G +R+ V++
Sbjct: 169 RDKK--------------MDKRYHALVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDS 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR++V++ G T ++ SP+TGR HQ+RVHC G PI D KYG
Sbjct: 213 E----GKPSETRFRVLERYV-GATLVEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|254508499|ref|ZP_05120618.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 16]
gi|219548611|gb|EED25617.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 16]
Length = 314
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPKARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++I+ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKASETRFKIIEKFSDA-TLVQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|168186171|ref|ZP_02620806.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
gi|169295643|gb|EDS77776.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
Length = 304
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 28/155 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + ++ +L +E + ++R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDSAHIILSEQLKEHS--------------MKREYIALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRI--TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK 146
+ +G+I APLG+ DRI VV N + AVT Y V++ + T +K
Sbjct: 177 IIKNDEGIIDAPLGR-----NPKDRIKRAVVRN-----GKSAVTHYNVLR-RFNKNTLVK 225
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + P+VGD YG++ R
Sbjct: 226 CILETGRTHQIRVHMAHI-NHPLVGDPMYGFRKQR 259
>gi|410617784|ref|ZP_11328749.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
gi|410162915|dbj|GAC32887.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
Length = 318
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG LV+ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPQARFLE---LVHRLDRDTSGCLVIAKKRSALKALHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALVVG ++ ++APL K ++ +G +R+ V+
Sbjct: 169 RDKK--------------MDKRYQALVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDT 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR++V+ G T ++ SP+TGR HQ+RVHC G PI D KYG
Sbjct: 213 E----GKPSETRFRVLNRYI-GSTLVEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|321474676|gb|EFX85641.1| hypothetical protein DAPPUDRAFT_32502 [Daphnia pulex]
Length = 250
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 49/229 (21%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
VHRLDRD++GIL++ QT A L+ +F D+E +Q+ Y + G P
Sbjct: 42 VHRLDRDTTGILLLASNQTVANKLNKLFL-----------DHE---IQKKYMVITKGIPS 87
Query: 92 CSKGVISAPL-GKVVVDNGKSDRITVVNN--DQIMSAQH--------AVTRYQVIKPSCH 140
+G I P+ K + D + V+++ D + SA++ A+T + V K +
Sbjct: 88 PREGTIDIPMCEKSIGDRQRMALRPVLSHSPDSLKSAKYNAKGKSFKAITHFWV-KTTNA 146
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIP 200
G +++L P TG +HQLRVH +E L P++GD+KY ++F P LS+D
Sbjct: 147 GTAFVELEPETGVRHQLRVHLSEGLDCPVLGDHKYSHA-----EKFAPQKLSQDI----- 196
Query: 201 KEKTLHFGLDLESGSILEKQPR---LHLHCKEMTLPNVSQAIQKVQLSS 246
L +I + + R +HLH M +P Q Q + ++S
Sbjct: 197 ----------LNLLAIKQSKARNIPMHLHAAFMAIPGFGQEGQPLCINS 235
>gi|90021267|ref|YP_527094.1| ribosomal large subunit pseudouridine synthase C [Saccharophagus
degradans 2-40]
gi|89950867|gb|ABD80882.1| ribosomal large subunit pseudouridine synthase C [Saccharophagus
degradans 2-40]
Length = 321
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L Y Y E LVHRLDRD+SG +++ + ++ L +F
Sbjct: 107 LAVHGGSGVTLGLIEALRQAFPQYSYLE---LVHRLDRDTSGCILVAKKRSMLRYLQELF 163
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R EKRI +R Y ALV+G + ++ APL + + +G +RI V+
Sbjct: 164 R------------GEKRIHKR-YLALVIGRWPSRRNLVDAPLLRKELQSG--ERIVRVSL 208
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + T + V++ T ++ P+TGR HQ+RVH A+ G P+VGD KYG
Sbjct: 209 D----GKPSKTEFNVVQRFGESATLVEARPITGRTHQIRVH-AQHQGHPLVGDPKYG 260
>gi|344340218|ref|ZP_08771144.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
gi|343799876|gb|EGV17824.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
Length = 420
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG LV+ + +++ LH + RE + + Y AL+VG
Sbjct: 237 LVHRLDRDTSGCLVISKRRSALRELHELIREGG--------------MDKRYLALIVGEL 282
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+K + APL K ++ G +R+ V+ D A+ R + T ++ +
Sbjct: 283 ERAKVNVDAPLKKNLLQGG--ERMVQVDQDDGKPARTVFRRLGRFRAESGVLTLVEAELI 340
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A LGTP+ GD KYG
Sbjct: 341 TGRTHQIRVHAAH-LGTPLAGDPKYG 365
>gi|297172088|gb|ADI23070.1| pseudouridylate synthases, 23S RNA-specific [uncultured gamma
proteobacterium HF0770_07M15]
Length = 277
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 26/150 (17%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
L++RLDR++SG++ +G+T +A L ++ E R + ++YWA+V G
Sbjct: 80 LINRLDRETSGVVCVGKTDEAARELRRLW--------------ESREVDKYYWAIVHGHV 125
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH-AVTRYQV---IKPSCHGYTWLK 146
S+G I APLG D VV D + H + TRY + +TWL+
Sbjct: 126 PESEGTIDAPLGS-------DDASEVVVKDCVRDDGHPSQTRYWTQWKFERDDEKFTWLR 178
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++P+TGRKHQ+R+H LG IVGD YG
Sbjct: 179 VAPVTGRKHQIRIHLQH-LGHAIVGDKLYG 207
>gi|53804453|ref|YP_113936.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
gi|53758214|gb|AAU92505.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
Length = 316
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+R + E L A + E LVHRLDRD+SG L++ + +++ LH F
Sbjct: 110 MAVHGGSGLRFGVIEGLRAAREDARFLE---LVHRLDRDTSGCLLIAKRRSALRQLHEQF 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R + + + Y AL G + V+ APL K V+ +G +R+ +++
Sbjct: 167 RGEG--------------VDKTYLALFSGVWARRRQVVDAPLLKNVLQSG--ERMVKISS 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + A+T ++ ++P G T ++ P+TGR HQ+RVH A LG P+ GD +YG
Sbjct: 211 E----GKAAITEFRRLEP-LSGATLVEARPVTGRTHQIRVH-ARSLGHPLAGDERYG 261
>gi|241896496|ref|ZP_04783792.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241870218|gb|EER73969.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 304
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + + SA +D N R Y+ALV G
Sbjct: 128 PGIVHRIDKDTSGLLMVAKNDQA---------HEALSADLKDKKN-----LRQYYALVHG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+KG I APLG+ D K I + AVT ++V+K GYT L+++
Sbjct: 174 EFSENKGTIKAPLGRSKTDRKKQAVIA--------GGRDAVTHFEVVKRYV-GYTLLRVT 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 225 LETGRTHQIRVHMA-YIGHPVAGDPLYG 251
>gi|407773645|ref|ZP_11120945.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407283091|gb|EKF08632.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 267
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P L HRLDRD++G L++ R S+ + +F EK S
Sbjct: 53 LKFGIQPEPTLAHRLDRDTAGCLLLCRHPKSSKKITRLFTEKKIGKS------------- 99
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI----K 136
YWA+V G G I AP+GK+ N +S +V+ D Q + T Y V+
Sbjct: 100 -YWAVVRGAMEDDHGFIDAPIGKI---NDESGWTMLVHED----GQPSKTEYTVLGRGKD 151
Query: 137 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TWL+L P TGR HQLRVH V G P++GD YG
Sbjct: 152 ADGKDITWLELVPHTGRTHQLRVHLDHV-GHPVIGDPFYG 190
>gi|167771389|ref|ZP_02443442.1| hypothetical protein ANACOL_02755 [Anaerotruncus colihominis DSM
17241]
gi|167666029|gb|EDS10159.1| pseudouridine synthase, RluA family [Anaerotruncus colihominis DSM
17241]
Length = 292
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
A C S RLV RLDRD+SG +V+ + +A VL
Sbjct: 116 FARDCAANGESCACRLVGRLDRDTSGAVVIAKNARAAAVLTG------------------ 157
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
+++ Y ALV G P GVI AP+G+ D R+ V N + AVT Y+
Sbjct: 158 -HVEKQYIALVTGMPNPKHGVIDAPIGQ--PDRKNPRRMIVAN------GKPAVTEYET- 207
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ---------F 186
+ C GY+ + TGR HQ+RVH A + G P++GD YG +T R +Q
Sbjct: 208 QIRCEGYSVVHCVLRTGRTHQIRVHMASI-GCPLLGDTLYGGETERIERQALHCMQASFI 266
Query: 187 HPSD---------LSKDSNEEIP 200
HP D + KD + IP
Sbjct: 267 HPVDKRLCIVHAPIPKDMQKLIP 289
>gi|410646393|ref|ZP_11356844.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
agarilytica NO2]
gi|410133999|dbj|GAC05243.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
agarilytica NO2]
Length = 318
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG LV+ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPQARFLE---LVHRLDRDTSGCLVIAKKRSALKNLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALVVG ++ ++APL K ++ +G +R+ V++
Sbjct: 169 RDKK--------------MDKRYHALVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDS 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR++V++ G T ++ SP+TGR HQ+RVHC G PI D KYG
Sbjct: 213 E----GKPSETRFRVLERYV-GATLVEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|452965059|gb|EME70088.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
sp. SO-1]
Length = 219
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 29/163 (17%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + + P L HRLDR++SG LV+GRT + L +F T A K
Sbjct: 35 ALRFGLNRRPELAHRLDRETSGCLVLGRTAKALAALGELF--ATGLAGKT---------- 82
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIK 136
YWA+VVG PR G I L K G + DR S ++T ++ ++
Sbjct: 83 --YWAVVVGKPREEAGTIDYALKKREKKFGWRMEVDR----------SGLASLTEWR-LR 129
Query: 137 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
S +WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 130 GSDGRLSWLECRPLTGRTHQIRAHCAAI-GHPLVGDAIYGRGT 171
>gi|410637062|ref|ZP_11347650.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola lipolytica
E3]
gi|410143441|dbj|GAC14855.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola lipolytica
E3]
Length = 319
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 26/176 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A T + E LVHRLDRD+SG L++ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPTAKFLE---LVHRLDRDTSGCLLIAKKRSALKHLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT + + Y ALV G ++ + APL K +V +G +RI V+
Sbjct: 169 RNKT--------------VDKRYQALVHGHWPENRFKVKAPLLKNIVKSG--ERIVSVST 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
D + + TRY++++ T ++ SP+TGR HQ+RVHC G PI D KY
Sbjct: 213 D----GKESETRYRILETFSQA-TLVEASPITGRTHQIRVHCQHA-GHPIACDSKY 262
>gi|197119918|ref|YP_002140345.1| RNA pseudouridine synthase, RluA family [Geobacter bemidjiensis
Bem]
gi|197089278|gb|ACH40549.1| RNA pseudouridine synthase, RluA family [Geobacter bemidjiensis
Bem]
Length = 297
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 38/156 (24%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
+P R+VHRLDR +SG++ + + +AT++ ++ ++ +Q+ YWALV
Sbjct: 125 DPSRVVHRLDRGTSGVMFFPKHKQAATLISNLLKDGK--------------VQKTYWALV 170
Query: 87 VGTPRCSKGVISAPLGKV------VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
G+P + APLGKV V NGK R T ++V+
Sbjct: 171 AGSPDQQSWKVDAPLGKVSKFKYGVALNGKPAR----------------TLFRVVGEGA- 213
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G T ++ PLTGR HQ+RVH A G PI+GD YG
Sbjct: 214 GVTAVEAKPLTGRTHQIRVHLAHS-GFPIIGDETYG 248
>gi|409402118|ref|ZP_11251731.1| ribosomal large subunit pseudouridine synthase D [Acidocella sp.
MX-AZ02]
gi|409129251|gb|EKM99112.1| ribosomal large subunit pseudouridine synthase D [Acidocella sp.
MX-AZ02]
Length = 324
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ +T+ + T L + TF+A R ++R Y AL G
Sbjct: 136 PGIVHRLDKDTSGLMVVAKTELALTRLSA-----TFAA---------RDIERRYLALCWG 181
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P +KG I +G+ D R+ VV ++ +HA T YQV++ + + +
Sbjct: 182 LPNPAKGRIEGDIGR---DPKDRKRMAVVKSN----GKHAATNYQVLEQAGLAASLIACR 234
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS--DLSKDSNEEIPKEKTLH 206
TGR HQ+RVH A + G P++GD Y + K P D++ D + +TL
Sbjct: 235 LETGRTHQIRVHLAHI-GHPLIGDPVYLRRRPAAAKLLPPEVRDMALDFPRQALHAETLG 293
Query: 207 FG 208
F
Sbjct: 294 FA 295
>gi|393766637|ref|ZP_10355192.1| pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392727955|gb|EIZ85265.1| pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 224
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P HRLDRD+SG L +GR + L K F+ S D
Sbjct: 46 LRFGLPRRPEAAHRLDRDTSGCLALGRHAKALARL-----GKLFAGSAVDKT-------- 92
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
YWA+V G P G I PL + +SD + A+T ++V+
Sbjct: 93 -YWAVVEGGPDAETGRIDLPLAR------RSDDPRSWWMKADPAGDPALTHWRVLG-RAG 144
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G TWL+L P+TGR HQLRVHCA G PI+GD YG
Sbjct: 145 GRTWLELKPVTGRTHQLRVHCAAS-GWPILGDSIYG 179
>gi|323495017|ref|ZP_08100106.1| ribosomal large subunit pseudouridine synthase C [Vibrio
brasiliensis LMG 20546]
gi|323310674|gb|EGA63849.1| ribosomal large subunit pseudouridine synthase C [Vibrio
brasiliensis LMG 20546]
Length = 319
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKASETRFKILEKFADA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|381336840|ref|YP_005174615.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|356644806|gb|AET30649.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 312
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + ++ S + + N QR Y+ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDKA---------HRSLSEQLKSHKN-----QRVYYALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I AP+G+ +D K I + AVT ++V+K GYT LK+S
Sbjct: 175 EFTEDSGTIEAPIGRHKIDRKKQAVIE--------GGREAVTHFRVLKRYV-GYTLLKVS 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + + G P+VGD YG
Sbjct: 226 LETGRTHQIRVHMSYI-GHPVVGDPVYG 252
>gi|91793653|ref|YP_563304.1| pseudouridine synthase, RluD [Shewanella denitrificans OS217]
gi|91715655|gb|ABE55581.1| ribosomal large subunit pseudouridine synthase C [Shewanella
denitrificans OS217]
Length = 318
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 22/157 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R KT +Q+ Y ALV G
Sbjct: 141 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRNKT--------------MQKDYLALVRGEW 186
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ I APL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 187 QAKDKSIKAPLLKITLASG--ERIVRVNAE----GKASETRFRIMQ-RYDGCTLVKASPV 239
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 187
TGR HQ+RVHC + G I D KY Q+ + H
Sbjct: 240 TGRTHQIRVHC-QFAGHAIACDDKYSEQSFDDSMRVH 275
>gi|261253417|ref|ZP_05945990.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260936808|gb|EEX92797.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 300
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 98 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 154
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + + V++APL K V++ I VN +
Sbjct: 155 KT--------------VKKFYFALVMGQWKANCKVVNAPLLKNEVNS-----IVRVNPN- 194
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 195 ---GKPSETRFKILEKFAEA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 244
>gi|37679452|ref|NP_934061.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio vulnificus YJ016]
gi|37198196|dbj|BAC94032.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio vulnificus YJ016]
Length = 315
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWENSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++VI+ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVIEKFPQA-TLVQASPITGRTHQIRVHT-QYSGHPIAWDDRYG 260
>gi|417953175|ref|ZP_12596223.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342817707|gb|EGU52584.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 316
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + + V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKANCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILEKFAEA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|109898450|ref|YP_661705.1| RluA family pseudouridine synthase [Pseudoalteromonas atlantica
T6c]
gi|109700731|gb|ABG40651.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
atlantica T6c]
Length = 318
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG LV+ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPQARFLE---LVHRLDRDTSGCLVIAKKRSALKNLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALVVG ++ ++APL K ++ +G +R+ V+
Sbjct: 169 RDKK--------------MDKRYQALVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDT 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR++V+ G T ++ SP+TGR HQ+RVHC G PI D KYG
Sbjct: 213 E----GKPSETRFRVLD-RFSGATLVEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|392545827|ref|ZP_10292964.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas rubra ATCC
29570]
Length = 320
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 23/179 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E A L D LVHRLDRD+SG L++ + + LH R
Sbjct: 111 MAVHGGSGLSYGLIE-AIRALRPD-ERNLELVHRLDRDTSGCLLISKRRAILKGLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G ++ PL K + +G +R+ V+++
Sbjct: 169 EKT--------------MEKNYWALVCGEWSAKHKNVTEPLRKNTLQSG--ERVVRVDHE 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ ++ TR++V++ G T ++ SP+TGR HQ+RVH + G PI D KYG Q
Sbjct: 213 EGKASH---TRFRVLE-RFDGATLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYGDQV 266
>gi|402773646|ref|YP_006593183.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401775666|emb|CCJ08532.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 229
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 34/177 (19%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
+GG + + D+L + PP L HRLD+D+SG LV+GR + + L ++F+
Sbjct: 30 KGGASLEDAFDQL-----RFGLPRPPALAHRLDKDTSGCLVLGRHRKALERLGALFKSGR 84
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNND 120
+ YWA+V G P +G I PLG++ G + D + +
Sbjct: 85 IGKT--------------YWAVVEGAPTGEEGEIDLPLGRLDATRGWWMRPDPLGLP--- 127
Query: 121 QIMSAQHAVTRYQVIKPSCHG-YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A T ++V+ S T+++ +P TGR HQ+RVH A+ +G PI+GD YG
Sbjct: 128 -------ARTSWRVLGGSPDNRLTFIEFTPHTGRTHQIRVH-AQAMGWPILGDPIYG 176
>gi|116618468|ref|YP_818839.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097315|gb|ABJ62466.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 312
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + ++ S + + N QR Y+ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDKA---------HRSLSEQLKSHKN-----QRVYYALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I AP+G+ +D K I + AVT ++V+K GYT LK+S
Sbjct: 175 EFTEDSGTIEAPIGRHKIDRKKQAVIE--------GGREAVTHFRVLKRYV-GYTLLKVS 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + + G P+VGD YG
Sbjct: 226 LETGRTHQIRVHMSYI-GHPVVGDPVYG 252
>gi|411119450|ref|ZP_11391830.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
gi|410711313|gb|EKQ68820.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
Length = 322
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G + + +T + L F +KT +R YW LV G
Sbjct: 141 PGIVHRLDKDTTGAICVAKTDLAHLHLQQQFHDKT--------------ARRDYWGLVHG 186
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ G I AP+G+ VD K + +V ++ + AVT +QV K YT +
Sbjct: 187 APKAESGTIDAPIGRHPVDRQK---MAIVPEEK--GGRRAVTHWQV-KERLGNYTLMNFE 240
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH A + G PIVGD Y
Sbjct: 241 LETGRTHQIRVHTAYI-GFPIVGDPLY 266
>gi|258625453|ref|ZP_05720346.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
VM603]
gi|449144542|ref|ZP_21775357.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
CAIM 602]
gi|258582257|gb|EEW07113.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
VM603]
gi|449080043|gb|EMB50962.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
CAIM 602]
Length = 316
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 33/177 (18%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
KT +Q++Y+ALV+G P C V++APL K V++ I VN
Sbjct: 172 KT--------------VQKYYYALVMGHWDPECK--VVNAPLLKNEVNS-----IVRVNP 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 211 N----GKPSETRFRILEKFTEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|297583963|ref|YP_003699743.1| RluA family pseudouridine synthase [Bacillus selenitireducens
MLS10]
gi|297142420|gb|ADH99177.1| pseudouridine synthase, RluA family [Bacillus selenitireducens
MLS10]
Length = 307
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L + KT R Y ALVVG
Sbjct: 129 PGIVHRIDKDTSGLLMVAKHDKAHESLVDQLKNKTTI--------------RQYEALVVG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T KG + AP+G+ D ++TV +A+ AVT +QVI+ +GYT +
Sbjct: 175 TIPHEKGTVDAPIGR---DPQDRQKMTVTEE----NARDAVTHFQVIE-RMNGYTHVLCE 226
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + +G PIVGD KYG
Sbjct: 227 LETGRTHQIRVHM-KYIGYPIVGDPKYG 253
>gi|330718578|ref|ZP_08313178.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc fallax KCTC
3537]
Length = 258
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + T+ + SA + + N QR Y+ALV G
Sbjct: 82 PGIVHRIDRDTSGLLMVAKNDTA---------HQALSAQLKAHKN-----QRIYYALVRG 127
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ + G ++AP+ + +D K ++ + AVT ++V++ GYT LK+
Sbjct: 128 EFKENSGTVNAPIARHKIDRKKQAIVS--------DGKPAVTHFEVVQRYV-GYTLLKVR 178
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PIVGD YG
Sbjct: 179 LETGRTHQIRVHMTYI-GHPIVGDPVYG 205
>gi|229528953|ref|ZP_04418343.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
12129(1)]
gi|229332727|gb|EEN98213.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
12129(1)]
Length = 315
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN++
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNSN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|410628423|ref|ZP_11339143.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola mesophila
KMM 241]
gi|410152029|dbj|GAC25912.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola mesophila
KMM 241]
Length = 318
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG LV+ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPQARFLE---LVHRLDRDTSGCLVIAKKRSALKNLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALVVG ++ ++APL K ++ +G +R+ V++
Sbjct: 169 RDKK--------------MDKRYQALVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDS 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR++V+ G T ++ SP+TGR HQ+RVHC G PI D KYG
Sbjct: 213 E----GKPSETRFRVLDRFV-GATLVEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|262166132|ref|ZP_06033869.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
VM223]
gi|262025848|gb|EEY44516.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
VM223]
Length = 316
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 33/177 (18%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
KT +Q++Y+ALV+G P C V++APL K V++ I VN
Sbjct: 172 KT--------------VQKYYYALVMGHWDPECK--VVNAPLLKNEVNS-----IVRVNP 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 211 N----GKPSETRFRILEKFTEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|262170983|ref|ZP_06038661.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
MB-451]
gi|261892059|gb|EEY38045.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
MB-451]
Length = 316
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 33/177 (18%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
KT +Q++Y+ALV+G P C V++APL K V++ I VN
Sbjct: 172 KT--------------VQKYYYALVMGHWDPECK--VVNAPLLKNEVNS-----IVRVNP 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 211 N----GKPSETRFRILEKFTEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|404371419|ref|ZP_10976724.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
gi|226912453|gb|EEH97654.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
Length = 305
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 25/157 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F+ + ++R Y+ALV G
Sbjct: 132 PGIVHRIDKDTSGILVIAKNDDAHNHLAKQFKNHS--------------IKREYYALVEG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS-AQHAVTRYQVIKPSCHGYTWLKL 147
+G + P+G+ K DR+ + IM + AVT Y V++ +G +K
Sbjct: 178 KFSKIEGTVDKPIGR-----NKKDRLKMA----IMEDGKRAVTHYNVLEQYNNGTALVKC 228
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 184
+ TGR HQ+RVH A + G P+VGD Y +K+K
Sbjct: 229 TLETGRTHQIRVHMASI-GHPLVGDPLYNSNKKQKFK 264
>gi|392309499|ref|ZP_10272033.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas citrea NCIMB
1889]
Length = 316
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 23/179 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E A L D + LVHRLDRD+SG L++ + ++ LH R
Sbjct: 111 MAVHGGSGLSYGLIE-AMRALRPD-EKSLELVHRLDRDTSGCLLISKRRSVLKSLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G + ++ PL K + +G +R+ V+++
Sbjct: 169 EKT--------------MEKNYWALVTGEWQSKTKNVTEPLRKNTLQSG--ERVVRVDHE 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ A H TR++V++ T ++ SP+TGR HQ+RVH + G PI D KYG Q
Sbjct: 213 E-GKASH--TRFKVLQ-RFDDCTLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYGDQV 266
>gi|157962324|ref|YP_001502358.1| RluA family pseudouridine synthase [Shewanella pealeana ATCC
700345]
gi|157847324|gb|ABV87823.1| pseudouridine synthase, RluA family [Shewanella pealeana ATCC
700345]
Length = 319
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 24/178 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ + E + T + LVHRLD+++SG+L++ + +++ LH R
Sbjct: 114 IAVHGGSGVEFGVIEAMRSLRTQ--QKFLELVHRLDKETSGVLLIAKKRSALRHLHDQLR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K +Q+ Y ALV G + VI APL K+ + +G +RI VN +
Sbjct: 172 YKK--------------MQKDYVALVRGEWQSHDKVIKAPLLKLTLKSG--ERIVRVNKE 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + TR+++++ T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 216 ----GKESETRFKILQ-RYEDSTLVQASPVTGRTHQIRVHC-QFAGHPIACDEKYSEQ 267
>gi|47229673|emb|CAG06869.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 107/249 (42%), Gaps = 59/249 (23%)
Query: 35 LDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSK 94
L++++SG L++ + A V +I N +Q YW + VG P S+
Sbjct: 173 LEKEASGALLLAK---RAEVAENIV-----------NFQRNNQVQITYWVITVGVPVPSE 218
Query: 95 GVISAP----------------LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 138
GVI P L + N D +T V + A AVTRY+V+ S
Sbjct: 219 GVIDIPIIEREVTGPQPHYKMALSPLFKMNDAGDGLTRVRAHR--QAHSAVTRYKVLDSS 276
Query: 139 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 198
C G + ++L P TG KHQ+RVH A L PI+GD+KY W + P ++
Sbjct: 277 C-GCSLVELQPSTGVKHQMRVHMAFGLTCPILGDHKYS-----HWNKLAP--------QK 322
Query: 199 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET--- 255
+P+ GL+ L LHLH + +TLP Q+ +S C K T
Sbjct: 323 LPERVLKKLGLEQSKSRHLP----LHLHARRLTLPGA----QRAGVSVRCPAPKYFTQTS 374
Query: 256 --LKLVAPL 262
L+L PL
Sbjct: 375 TLLQLTLPL 383
>gi|343507589|ref|ZP_08744986.1| ribosomal large subunit pseudouridine synthase C [Vibrio
ichthyoenteri ATCC 700023]
gi|343510954|ref|ZP_08748145.1| ribosomal large subunit pseudouridine synthase C [Vibrio
scophthalmi LMG 19158]
gi|342797647|gb|EGU33290.1| ribosomal large subunit pseudouridine synthase C [Vibrio
ichthyoenteri ATCC 700023]
gi|342799900|gb|EGU35450.1| ribosomal large subunit pseudouridine synthase C [Vibrio
scophthalmi LMG 19158]
Length = 317
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKASCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-RFPDATLIQASPITGRTHQIRVHV-QYAGHPIGWDDRYG 260
>gi|146296964|ref|YP_001180735.1| RluA family pseudouridine synthase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410540|gb|ABP67544.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 292
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 25/153 (16%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+++RLD+D+SGI+V + +++ S F EKR +++ Y A+V G
Sbjct: 125 IINRLDKDTSGIVVFAKNSYFHSIVSSEF--------------EKRTIEKTYIAVVDGIL 170
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
G I P+ + ++G I N D +A+T Y+V+ + Y+ LKL P+
Sbjct: 171 TKKSGFIEKPISRS--NDGIKREI---NED----GDYAITYYEVVD-YKNNYSILKLKPI 220
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 183
TGR HQLRVH A + G PIVGD YG ++ +
Sbjct: 221 TGRTHQLRVHLASI-GYPIVGDVLYGTGKNKNF 252
>gi|253996195|ref|YP_003048259.1| RluA family pseudouridine synthase [Methylotenera mobilis JLW8]
gi|253982874|gb|ACT47732.1| pseudouridine synthase, RluA family [Methylotenera mobilis JLW8]
Length = 340
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 23/182 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
V GG GI R + E L ++ LVHRLDR++SG+L++ + +++ LH R
Sbjct: 122 FAVHGGSGISRGVIE--QLRLERPRAKFLELVHRLDRETSGVLMLAKKRSALVALHEAIR 179
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG--KSDRITVVN 118
+N +KR Y LV G K + L K V+ NG + + +T V+
Sbjct: 180 ---------NNQTDKR-----YLVLVQGEWLEPKKRVVLDLQKYVLPNGERRVNVVTDVS 225
Query: 119 NDQIMSAQHAVTRYQVIK----PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
D+ Q + T ++++K P ++ L+ +TGR HQLRV A LG PIVGD K
Sbjct: 226 KDKFGERQTSETMFRLLKNFSHPVIGKFSLLEAQLVTGRTHQLRVQLAH-LGFPIVGDDK 284
Query: 175 YG 176
YG
Sbjct: 285 YG 286
>gi|359299253|ref|ZP_09185092.1| 23S rRNA pseudouridylate synthase C [Haemophilus [parainfluenzae]
CCUG 13788]
Length = 320
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 25/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHR+DRD+SGIL++ + ++S LH
Sbjct: 114 IAVHGGSGLNFGVIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSSLRHLHEQL 170
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT +Q+ Y ALV G + I APL K + +G +RI V+
Sbjct: 171 REKT--------------VQKDYLALVRGQWQSHVKAIKAPLLKNELASG--ERIVKVSE 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+Q+ + T +K SP+TGR HQ+RVH + G PI D KYG
Sbjct: 215 ----AGKPSETRFQIEERYGQEATLVKASPITGRTHQIRVHT-QYAGHPIACDDKYG 266
>gi|417090374|ref|ZP_11955908.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
gi|353533670|gb|EHC03319.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
Length = 297
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + T L + ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS--------------LRKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GVI AP+G+ D K +T + AVTR+QV++ YT ++L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RFGDYTLVELT 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 222 LETGRTHQIRVHMA-YIGHPVAGDEAYG 248
>gi|312882470|ref|ZP_07742211.1| ribosomal large subunit pseudouridine synthase C [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369870|gb|EFP97381.1| ribosomal large subunit pseudouridine synthase C [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 315
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKYYYALVMGEWKSQCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ + T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKASETRFKILEKFANA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|424046879|ref|ZP_17784441.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-03]
gi|408884939|gb|EKM23667.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-03]
Length = 314
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|343517296|ref|ZP_08754302.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. N418]
gi|342793620|gb|EGU29410.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. N418]
Length = 317
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKASCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-RFPDATLIQASPITGRTHQIRVHV-QYAGHPIGWDDRYG 260
>gi|341820394|emb|CCC56664.1| pseudouridylate synthase [Weissella thailandensis fsh4-2]
Length = 304
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L S D N+K + R Y+ALV G
Sbjct: 128 PGIVHRIDKDTSGLLMVAKNDQAHEALSS------------DLKNKKNL--RQYYALVHG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+KG I APLG+ + K I + AVT ++V+K GYT L+++
Sbjct: 174 EFSENKGTIKAPLGRSKTNRKKQAVIA--------GGRDAVTHFEVVKRYV-GYTLLRVT 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 225 LETGRTHQIRVHMA-YIGHPVAGDPLYG 251
>gi|114326764|ref|YP_743921.1| ribosomal large subunit pseudouridine synthase A [Granulibacter
bethesdensis CGDNIH1]
gi|114314938|gb|ABI60998.1| ribosomal large subunit pseudouridine synthase A [Granulibacter
bethesdensis CGDNIH1]
Length = 224
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 22/152 (14%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P L HRLD D+SG L++ +T ++F + KR YWA+V
Sbjct: 53 EGPWLAHRLDTDTSGCLIIALRKTPLLEAQAMFAK---------GQAGKR-----YWAVV 98
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDR--ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTW 144
G P ++G I L + ++G++ R +V + Q Q A T +++++ G +W
Sbjct: 99 RGAPPAAEGRIDRKLSRRS-ESGEAGRGHWRMVEDAQ---GQSASTSWRIMEHQ-DGLSW 153
Query: 145 LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L+LSPLTGR HQLRVHCA +LG PI+GD YG
Sbjct: 154 LELSPLTGRTHQLRVHCA-LLGCPILGDPVYG 184
>gi|343496515|ref|ZP_08734611.1| ribosomal large subunit pseudouridine synthase C [Vibrio
nigripulchritudo ATCC 27043]
gi|342821128|gb|EGU55922.1| ribosomal large subunit pseudouridine synthase C [Vibrio
nigripulchritudo ATCC 27043]
Length = 316
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 29/177 (16%)
Query: 1 MPVQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + F
Sbjct: 112 IAVHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQF 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT +Q++Y+ALV+G + S V++APL K V++ I VN
Sbjct: 169 REKT--------------VQKYYFALVMGQWKSSCRVVNAPLLKNEVNS-----IVRVNP 209
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 210 ----KGKPSETRFKVLE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIGWDDRYG 260
>gi|386586165|ref|YP_006082567.1| RluA family pseudouridine synthase [Streptococcus suis D12]
gi|353738311|gb|AER19319.1| pseudouridine synthase, RluA family [Streptococcus suis D12]
Length = 297
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + T L + ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GVI AP+G+ D K +T + AVTR+QV++ YT ++L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RFGDYTLVELT 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 222 LETGRTHQIRVHMA-YIGHPVAGDEAYG 248
>gi|167623698|ref|YP_001673992.1| RluA family pseudouridine synthase [Shewanella halifaxensis
HAW-EB4]
gi|167353720|gb|ABZ76333.1| pseudouridine synthase, RluA family [Shewanella halifaxensis
HAW-EB4]
Length = 319
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 24/178 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ + E + T + LVHRLD+++SG+L++ + +++ LH R
Sbjct: 114 IAVHGGSGVEFGVIEAMRSLRTQ--QKFLELVHRLDKETSGVLLIAKKRSALRHLHDQLR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K +Q+ Y ALV G + VI APL K+ + +G +RI VN +
Sbjct: 172 YKK--------------MQKDYVALVRGEWQSHDKVIKAPLLKLTLKSG--ERIVRVNKE 215
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + TR+++++ T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 216 ----GKESETRFKILQRYSDS-TLVQASPVTGRTHQIRVHC-QFAGHPIACDEKYSEQ 267
>gi|148262954|ref|YP_001229660.1| RluA family pseudouridine synthase [Geobacter uraniireducens Rf4]
gi|146396454|gb|ABQ25087.1| ribosomal large subunit pseudouridine synthase D [Geobacter
uraniireducens Rf4]
Length = 320
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ ++ + L F+E T ++R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKSDAAHQSLAEQFKEHT--------------IKRVYLALVYG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ KG + + +G+ VD + + + +HAVT ++V+ G T L+L
Sbjct: 177 APKDDKGRLESHIGRHPVDRKRM-------SGKAKHGKHAVTHWRVVG-RYRGITLLRLR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH +E G P+VGD YG
Sbjct: 229 LETGRTHQIRVHLSEA-GYPLVGDDVYG 255
>gi|120599252|ref|YP_963826.1| RluA family pseudouridine synthase [Shewanella sp. W3-18-1]
gi|146292674|ref|YP_001183098.1| RluA family pseudouridine synthase [Shewanella putrefaciens CN-32]
gi|120559345|gb|ABM25272.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
W3-18-1]
gi|145564364|gb|ABP75299.1| ribosomal large subunit pseudouridine synthase C [Shewanella
putrefaciens CN-32]
Length = 330
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 153 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 198
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
V+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 199 SAQDKVVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 251
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 252 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 278
>gi|406881564|gb|EKD29593.1| hypothetical protein ACD_78C00346G0006, partial [uncultured
bacterium (gcode 4)]
Length = 324
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 85/149 (57%), Gaps = 21/149 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L+HR+D+D+SGI+++ +T+ S F ++K +++ Y A+ +G
Sbjct: 144 PSLIHRIDKDTSGIVMIAKTKPSLD-----FMLNALQSNK---------IEKVYLAVCLG 189
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG-YTWLKL 147
TP ++GVI L + ++N + + +++++ Q AVT Y+V++ HG Y+ ++
Sbjct: 190 TPPETRGVIRRKLRR--LENAERENKIIIDDE---GGQTAVTHYKVLETGIHGKYSLVEC 244
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + G P++GD YG
Sbjct: 245 VLETGRMHQIRVHLASI-GCPVLGDTTYG 272
>gi|337287215|ref|YP_004626688.1| RluA family pseudouridine synthase [Thermodesulfatator indicus DSM
15286]
gi|335360043|gb|AEH45724.1| pseudouridine synthase, RluA family [Thermodesulfatator indicus DSM
15286]
Length = 312
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+LV+ + + L +F++ R +++ Y ALV G
Sbjct: 136 PGIVHRLDKDTSGLLVVAKDDKTHQALTQMFKD--------------REIKKIYLALVHG 181
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
PR S G I P+G+ V+ K + + + A+T Y+V + L++
Sbjct: 182 VPRLSAGKIEKPIGRHPVNRQKM-------SVHAKTGREALTFYRV-RERFPKAALLEVE 233
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+RVH A + G PIVGD YG
Sbjct: 234 PKTGRTHQIRVHLASI-GHPIVGDELYG 260
>gi|148552990|ref|YP_001260572.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
gi|148498180|gb|ABQ66434.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
Length = 321
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 22/150 (14%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHR+D+D+SG++V +T + L + F + + R Y A+V
Sbjct: 136 ERPGIVHRIDKDTSGLMVAAKTDPAHVGLAAQFARHS--------------IDRRYRAIV 181
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK 146
GTPR + G + APL + D K I +V + + + AVT Y VI+P ++
Sbjct: 182 AGTPRLAAGTVDAPLARSTADRKK---IAIVADGR---GKRAVTHYSVIEP-LRRAALVE 234
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A LG P++GD YG
Sbjct: 235 CRLETGRTHQVRVHMAS-LGHPLLGDPVYG 263
>gi|386313353|ref|YP_006009518.1| RluA family pseudouridine synthase [Shewanella putrefaciens 200]
gi|319425978|gb|ADV54052.1| pseudouridine synthase, RluA family [Shewanella putrefaciens 200]
Length = 330
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 153 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 198
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
V+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 199 SAQDKVVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 251
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 252 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 278
>gi|262276054|ref|ZP_06053863.1| ribosomal large subunit pseudouridine synthase C [Grimontia
hollisae CIP 101886]
gi|262219862|gb|EEY71178.1| ribosomal large subunit pseudouridine synthase C [Grimontia
hollisae CIP 101886]
Length = 318
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 25/146 (17%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ L + FREKT +Q++Y+AL +G
Sbjct: 140 LVHRIDRDTSGILLIAKKRSALRHLQAQFREKT--------------VQKYYFALTMGNW 185
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ S ++APL K V++ I VN D + + TR++V++ T ++ SP+
Sbjct: 186 KPSMKKVTAPLLKNEVNS-----IVRVNPD----GKPSETRFKVLE-QFDQATLVQASPI 235
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A+ +G P+ D +YG
Sbjct: 236 TGRTHQIRVH-AQYVGHPLAWDDRYG 260
>gi|424033462|ref|ZP_17772876.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-01]
gi|408874711|gb|EKM13879.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-01]
Length = 314
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGEWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILEKFDQA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|163803777|ref|ZP_02197632.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. AND4]
gi|159172418|gb|EDP57289.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. AND4]
Length = 314
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRYLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN
Sbjct: 171 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNP-- 209
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 210 --KGKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|223934286|ref|ZP_03626210.1| pseudouridine synthase, RluA family [Streptococcus suis 89/1591]
gi|253751575|ref|YP_003024716.1| RNA pseudouridylate synthase [Streptococcus suis SC84]
gi|253753476|ref|YP_003026617.1| RNA pseudouridylate synthase [Streptococcus suis P1/7]
gi|253755698|ref|YP_003028838.1| RNA pseudouridylate synthase [Streptococcus suis BM407]
gi|330832720|ref|YP_004401545.1| RluA family pseudouridine synthase [Streptococcus suis ST3]
gi|386577763|ref|YP_006074169.1| hypothetical protein [Streptococcus suis GZ1]
gi|386579818|ref|YP_006076223.1| RluA family pseudouridine synthase [Streptococcus suis JS14]
gi|386581762|ref|YP_006078166.1| RluA family pseudouridine synthase [Streptococcus suis SS12]
gi|386583987|ref|YP_006080390.1| RluA family pseudouridine synthase [Streptococcus suis D9]
gi|386587998|ref|YP_006084399.1| RluA family pseudouridine synthase [Streptococcus suis A7]
gi|403061401|ref|YP_006649617.1| RluA family pseudouridine synthase [Streptococcus suis S735]
gi|31364860|gb|AAP49462.1| YlyB [Streptococcus suis]
gi|223897042|gb|EEF63479.1| pseudouridine synthase, RluA family [Streptococcus suis 89/1591]
gi|251815864|emb|CAZ51475.1| putative RNA pseudouridylate synthase [Streptococcus suis SC84]
gi|251818162|emb|CAZ55959.1| putative RNA pseudouridylate synthase [Streptococcus suis BM407]
gi|251819722|emb|CAR45564.1| putative RNA pseudouridylate synthase [Streptococcus suis P1/7]
gi|292558226|gb|ADE31227.1| YlyB [Streptococcus suis GZ1]
gi|319758010|gb|ADV69952.1| pseudouridine synthase, RluA family [Streptococcus suis JS14]
gi|329306943|gb|AEB81359.1| pseudouridine synthase, RluA family [Streptococcus suis ST3]
gi|353733908|gb|AER14918.1| pseudouridine synthase, RluA family [Streptococcus suis SS12]
gi|353736133|gb|AER17142.1| pseudouridine synthase, RluA family [Streptococcus suis D9]
gi|354985159|gb|AER44057.1| pseudouridine synthase, RluA family [Streptococcus suis A7]
gi|402808727|gb|AFR00219.1| RluA family pseudouridine synthase [Streptococcus suis S735]
Length = 297
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + T L + ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS--------------LRKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GVI AP+G+ D K +T + AVTR+QV++ YT ++L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RFGDYTLVELT 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 222 LETGRTHQIRVHMA-YIGHPVAGDEAYG 248
>gi|253702213|ref|YP_003023402.1| pseudouridine synthase [Geobacter sp. M21]
gi|251777063|gb|ACT19644.1| pseudouridine synthase, RluA family [Geobacter sp. M21]
Length = 297
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 38/156 (24%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
+P R+VHRLDR +SG++ + + +AT++ ++ ++ +Q+ YWALV
Sbjct: 125 DPSRVVHRLDRGTSGVMFFPKHKQAATLISNLLKDGK--------------VQKTYWALV 170
Query: 87 VGTPRCSKGVISAPLGKV------VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
G+P + APLGKV V NGK R T ++V+
Sbjct: 171 SGSPDQQSWKVEAPLGKVSKFKYGVALNGKPAR----------------TLFRVVGEGA- 213
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G T ++ PLTGR HQ+RVH A G PI+GD YG
Sbjct: 214 GVTAVEAKPLTGRTHQIRVHLA-YSGFPIIGDETYG 248
>gi|56416692|ref|YP_153766.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale
str. St. Maries]
gi|222475057|ref|YP_002563472.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Florida]
gi|255003036|ref|ZP_05278000.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Puerto Rico]
gi|255004159|ref|ZP_05278960.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Virginia]
gi|56387924|gb|AAV86511.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale
str. St. Maries]
gi|222419193|gb|ACM49216.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Florida]
Length = 296
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 37/177 (20%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPP---RLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
VQGG ++ SID++ D +P R+VHRLD+D+SG+LV+ R A L F
Sbjct: 109 VQGGSKVKVSIDDV------LDKIKPGECCRIVHRLDKDTSGVLVLARNLDVARYLAREF 162
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLG-KVVVDNGKSDRITVVN 118
RE R +++ Y A+ G P+ + G +S P+ KV G+S
Sbjct: 163 RE--------------RRVKKEYIAVTRGVPQPASGEVSTPIFYKVRSATGES------- 201
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
M + A T + V++ L L P+TGRKHQLR+H +++ G PIVGD KY
Sbjct: 202 ----MIEKEAKTFFSVMRILGDCAVVL-LRPVTGRKHQLRIHMSQI-GCPIVGDNKY 252
>gi|407003108|gb|EKE19731.1| hypothetical protein ACD_8C00118G0003 [uncultured bacterium]
Length = 315
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 20/148 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ R K F+A K + N R +++ Y A+ G
Sbjct: 137 PGIVHRLDKDTSGLIVVARNG------------KAFNALKANFKN--REVEKKYLAITKG 182
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +GVI + K + ++ NN + + + AVT ++V++ C Y+ +++
Sbjct: 183 IFKEKEGVIEKAIAK---SSSYRKQVIARNNTKTI-IREAVTNFRVVE-ECGDYSMVEVL 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+R+H A + G PIVGD YG
Sbjct: 238 PKTGRTHQIRIHLASI-GHPIVGDVVYG 264
>gi|254994901|ref|ZP_05277091.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Mississippi]
Length = 296
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 37/177 (20%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPP---RLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
VQGG ++ SID++ D +P R+VHRLD+D+SG+LV+ R A L F
Sbjct: 109 VQGGSKVKVSIDDV------LDKIKPGECCRIVHRLDKDTSGVLVLARNLDVARYLAREF 162
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLG-KVVVDNGKSDRITVVN 118
RE R +++ Y A+ G P+ + G +S P+ KV G+S
Sbjct: 163 RE--------------RRVKKEYIAVTRGVPQPASGEVSTPIFYKVRSATGES------- 201
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
M + A T + V++ L L P+TGRKHQLR+H +++ G PIVGD KY
Sbjct: 202 ----MIEKEAKTFFSVMRILGDCAVVL-LRPVTGRKHQLRIHMSQI-GCPIVGDNKY 252
>gi|28898835|ref|NP_798440.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio parahaemolyticus
RIMD 2210633]
gi|153839692|ref|ZP_01992359.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AQ3810]
gi|260361710|ref|ZP_05774737.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus K5030]
gi|260879491|ref|ZP_05891846.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AN-5034]
gi|260898210|ref|ZP_05906706.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus Peru-466]
gi|417319416|ref|ZP_12105974.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 10329]
gi|34395766|sp|Q87N15.1|RLUC_VIBPA RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|28807054|dbj|BAC60324.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio parahaemolyticus
RIMD 2210633]
gi|149746785|gb|EDM57773.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AQ3810]
gi|308088378|gb|EFO38073.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus Peru-466]
gi|308093528|gb|EFO43223.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AN-5034]
gi|308111282|gb|EFO48822.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus K5030]
gi|328474606|gb|EGF45411.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 10329]
Length = 315
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|433658162|ref|YP_007275541.1| Ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus BB22OP]
gi|432508850|gb|AGB10367.1| Ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus BB22OP]
Length = 315
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|153827554|ref|ZP_01980221.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MZO-2]
gi|149738478|gb|EDM52874.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MZO-2]
Length = 315
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKSSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|302845024|ref|XP_002954051.1| pseudouridine synthase mitochondrial precursor [Volvox carteri f.
nagariensis]
gi|300260550|gb|EFJ44768.1| pseudouridine synthase mitochondrial precursor [Volvox carteri f.
nagariensis]
Length = 955
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 46/193 (23%)
Query: 12 SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSA-----------------TV 54
+++++ L + + PRLVHRLD+ +SG++ + R +
Sbjct: 697 TLNDVMQEGLRFGQWDEPRLVHRLDQAASGVMALSRERRGGEDRDPNDEDEEAGGFGGRG 756
Query: 55 LHSIFREKTFSASKEDN-------DNEKRILQRWYWALVVG--TPRCSKGVISAPLGKVV 105
R + N D E + R YWA + G PR S G +S P VV
Sbjct: 757 GDPARRGRVGPGGLALNRDERVGRDGEMPAIHRTYWAFLAGDLQPRQS-GRVSLP---VV 812
Query: 106 VDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 165
VD ++ AVT Y+V C G +W++L+P TGR+HQLR+HCA L
Sbjct: 813 VDG-------------VLCP--AVTAYRVKATGC-GVSWVELTPETGRRHQLRIHCARKL 856
Query: 166 GTPIVGDYKYGWQ 178
G PI+GD +YG++
Sbjct: 857 GAPIIGDGRYGYR 869
>gi|127512523|ref|YP_001093720.1| RluA family pseudouridine synthase [Shewanella loihica PV-4]
gi|126637818|gb|ABO23461.1| ribosomal large subunit pseudouridine synthase C [Shewanella
loihica PV-4]
Length = 329
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+++SG+L++ + + + LH R K +Q+ Y ALV G
Sbjct: 152 LVHRLDKETSGVLLIAKKRRALKHLHDQLRYKK--------------MQKDYMALVRGEW 197
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI+APL K+ + +G +RI VN + + + TR+++++ G T ++ SP+
Sbjct: 198 QNHDKVINAPLLKLTLKSG--ERIVRVNQE----GKPSETRFKIMQ-RYQGATLVQASPV 250
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 251 TGRTHQIRVHC-QYAGHPIACDEKYSEQ 277
>gi|33239671|ref|NP_874613.1| pseudouridylate synthase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237196|gb|AAP99265.1| 23S RNA-specific pseudouridylate synthase [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 318
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 22/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ ++Q + L +KRI R Y ALV G
Sbjct: 144 PGIVHRLDKDTTGCIVIAKSQEALVNLQVQI--------------QKRIASRRYIALVHG 189
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P KG+ISAP+G+ +D K VVN+ S + A T ++ +K Y+ L
Sbjct: 190 VPHGDKGIISAPIGRHPIDRKK---YAVVNDG---SGRDACTHWE-LKERLGDYSLLSFK 242
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH A + G PI+GD Y
Sbjct: 243 LETGRTHQIRVHSAHI-GHPILGDPTY 268
>gi|410632029|ref|ZP_11342700.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
gi|410148565|dbj|GAC19567.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
Length = 317
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 26/175 (14%)
Query: 3 VQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ I+ L A + E LVHRLDRD+SG L++ + +++ LH R+
Sbjct: 113 VHGGSGLSFGVIEALRALRPQQKFLE---LVHRLDRDTSGCLLIAKKRSALKNLHEQLRD 169
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
R + + Y ALV G ++ + APL K + +G +RI +V+++
Sbjct: 170 --------------RKVDKRYQALVAGEWPANRFKVKAPLLKNTLKSG--ERIVLVDDE- 212
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TRY++++ S + T ++ SP+TGR HQ+RVHC G PI D +YG
Sbjct: 213 ---GKPSETRYRILE-SFNQATLVEASPITGRTHQIRVHCLHA-GHPIAADNRYG 262
>gi|28493478|ref|NP_787639.1| pseudouridylate synthase-like protein [Tropheryma whipplei str.
Twist]
gi|28476520|gb|AAO44608.1| pseudouridylate synthase-like protein [Tropheryma whipplei str.
Twist]
Length = 303
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 28/148 (18%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD ++SG++V+ ++ + L + FR+ R + + Y ALV G P
Sbjct: 126 IVHRLDANTSGLMVLAKSDLAYHNLKAAFRD--------------RAIHKRYKALVQGYP 171
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV--IKPSCHGYTWLKLS 148
S GVI+AP+G+ D DR + S + AVT+Y + P G+T L ++
Sbjct: 172 DPSSGVINAPIGR---DLKHRDRFCI-----DYSGRDAVTQYSTEEVYP---GFTLLSVA 220
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+RVH + L P+VGD KYG
Sbjct: 221 PKTGRTHQIRVHFS-ALRHPLVGDVKYG 247
>gi|156230593|gb|AAI52263.1| Zgc:92006 protein [Danio rerio]
Length = 358
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPP---RLVHRLDRDSSGILVMGRTQTSATVLH 56
+P+ GIR SI E L D P L H+L+++++G+L++ +T+ +A +
Sbjct: 107 VPLHNINGIRNSIAECLPLLAKISDNMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQ 166
Query: 57 SIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP---------------- 100
++ + ++ Y A+ VG P S+GVI P
Sbjct: 167 TLIQSHK--------------VEMKYLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMA 212
Query: 101 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
L + N D +T V + A AVTRY+V+ + G + ++L PLTG K+QLRVH
Sbjct: 213 LSPLFKVNEDGDGVTRVRAHR--QAHAAVTRYRVLD-NTSGCSLVELQPLTGVKNQLRVH 269
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
A L PI+GD+KY W + P +++P+ GL L
Sbjct: 270 MALALTCPILGDHKYSH-----WSKLAP--------QKLPEGTLRRLGLVQSKTRYLP-- 314
Query: 221 PRLHLHCKEMTLP 233
LHLH + + LP
Sbjct: 315 --LHLHSRRIVLP 325
>gi|118443119|ref|YP_878025.1| ribosomal large subunit pseudouridine synthase D [Clostridium novyi
NT]
gi|118133575|gb|ABK60619.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Clostridium novyi NT]
Length = 304
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 28/155 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + +L +E + ++R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNDNAHIILSEQLKEHS--------------MKREYVALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRI--TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK 146
+ +G I PLG+ DRI VV N ++A+T Y+VI+ + T +K
Sbjct: 177 IIKDDEGTIDEPLGR-----NPKDRIKRAVVRN-----GKNAITHYEVIR-RFNKNTLVK 225
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + P+VGD YG++ R
Sbjct: 226 CILETGRTHQIRVHMAHI-NHPLVGDPMYGFKKQR 259
>gi|388599756|ref|ZP_10158152.1| ribosomal large subunit pseudouridine synthase C [Vibrio campbellii
DS40M4]
Length = 314
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-RFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|206900407|ref|YP_002249968.1| ribosomal large subunit pseudouridine synthase C [Dictyoglomus
thermophilum H-6-12]
gi|206739510|gb|ACI18568.1| ribosomal large subunit pseudouridine synthase C [Dictyoglomus
thermophilum H-6-12]
Length = 226
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPR----LVHRLDRDSSGILVMGRTQTSATVLHSI 58
VQG I ++ E++ + Y +P +VHRLD+ SG+++ R SA L
Sbjct: 27 VQGDITKSTTLLEISKAYIKEKYKKPGNVFLAIVHRLDKPVSGVVIFARNSKSAGRLSEA 86
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
FRE R +++ Y AL G + KG IS L + V+ + R++
Sbjct: 87 FRE--------------RKVEKEYIALCKGIFKVKKGTISESL--LWVEKERKARVS--Q 128
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+D+ +++A+T Y+V++ + ++L P TGRKHQLR H + +G PI+GD KYG
Sbjct: 129 DDK---SKNAITHYEVLE-EFKNLSLVRLIPETGRKHQLRAHLS-YIGHPILGDEKYG 181
>gi|424035602|ref|ZP_17774807.1| pseudouridine synthase, RluA family protein, partial [Vibrio
cholerae HENC-02]
gi|408897600|gb|EKM33322.1| pseudouridine synthase, RluA family protein, partial [Vibrio
cholerae HENC-02]
Length = 302
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 102 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 158
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 159 KT--------------VKKFYFALVMGEWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 198
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 199 ---GKPSETRFKILEKFDQA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 248
>gi|399072757|ref|ZP_10750274.1| 23S RNA-specific pseudouridylate synthase, partial [Caulobacter sp.
AP07]
gi|398042464|gb|EJL35477.1| 23S RNA-specific pseudouridylate synthase, partial [Caulobacter sp.
AP07]
Length = 205
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV- 87
PRL+HRLDRD+SG+++ RT+ +AT L K F ++ Y A+V
Sbjct: 78 PRLIHRLDRDTSGVILTARTKPAATFLGKALMGKRF--------------RKTYLAIVTP 123
Query: 88 GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKL 147
G P G I APL + + R+ + A+ A +RY+ + + G ++L
Sbjct: 124 GAPEPRGGQIDAPLRRESIGREAYMRVCEAGHPD---AETARSRYKTLA-AGEGAALVEL 179
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYK 174
SP TGR HQLRVH A + G PI GD +
Sbjct: 180 SPDTGRMHQLRVHMASI-GRPIAGDSR 205
>gi|386716186|ref|YP_006182510.1| pseudouridine synthase [Halobacillus halophilus DSM 2266]
gi|384075743|emb|CCG47239.1| pseudouridine synthase [Halobacillus halophilus DSM 2266]
Length = 297
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 27/165 (16%)
Query: 20 CLTYDYSEPPR----LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
+ Y S+ P +VHRLDRD+SG+++ + + + L ++ K
Sbjct: 118 LMNYVKSKNPNHRIFVVHRLDRDTSGVMLFAKNEEAKLKLQQSWK--------------K 163
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
+ +R Y ALV G+P+ +G + + V K+ ++ N + AQHA+T Y+ +
Sbjct: 164 MVKERKYAALVEGSPKQPEGTVES-----YVKESKTLKMFTTKNPK--GAQHAITHYKKV 216
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+ + + T L++ TGRK+Q+RVH E+ G PI GD KYG +T+
Sbjct: 217 QGNAN-LTLLEVQLETGRKNQIRVHMQEI-GHPIAGDKKYGARTN 259
>gi|255021322|ref|ZP_05293370.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus ATCC 51756]
gi|340782174|ref|YP_004748781.1| ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus SM-1]
gi|254969185|gb|EET26699.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus ATCC 51756]
gi|340556327|gb|AEK58081.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus SM-1]
Length = 316
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 23/179 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG GIR + E A L D E LVHRLDRD+SG L++ + +++ LH R
Sbjct: 108 MAVHGGSGIRYGVIE-ALRQLRPDLREL-ELVHRLDRDTSGCLLLSKRRSALRSLHQALR 165
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E+ + + Y ALV G + ++ V+ PL K ++ +G +RI V+ D
Sbjct: 166 EEA--------------MDKRYLALVGGRWKGAERVVKLPLRKNILQSG--ERIVRVDED 209
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
Q A+ R + + + T L+ TGR HQ+RVH + +G P GD KYG +T
Sbjct: 210 QGKPARTRFYREEDLGIA----TLLRAELDTGRTHQIRVHL-QAIGHPTAGDSKYGDET 263
>gi|333997062|ref|YP_004529674.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-2]
gi|333740776|gb|AEF86266.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-2]
Length = 319
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+++ + L F+ +T +++ Y ALV G
Sbjct: 137 PGIVHRLDKDTSGVIIAAWDDAALAFLADQFKART--------------VKKTYIALVQG 182
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
TP+ ++GVI ++V D+ R TV + + A+TRY+VI+ S ++ L L
Sbjct: 183 TPKETQGVIET---RIVRDSRDRKRFTVSFD----KGKAALTRYRVIR-SWGAWSLLLLQ 234
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+RVH LG PI+GD YG
Sbjct: 235 PKTGRTHQIRVHLRH-LGHPILGDPIYG 261
>gi|397676641|ref|YP_006518179.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|2995386|emb|CAA63803.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397330|gb|AFN56657.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 219
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 23/160 (14%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
LA+ C + + P +VHRLDRD+SG L++ R L F +
Sbjct: 40 LASLC--FGFKRWPSIVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQ------------ 85
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
+++ YWA++ G P ++G I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 --VKKCYWAILEGVPEKNEGTIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEIL 137
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ G + + P TGR HQLRVH A LG PIVGD Y
Sbjct: 138 AKN-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFY 176
>gi|58039270|ref|YP_191234.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H]
gi|58001684|gb|AAW60578.1| Ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 75/148 (50%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P L HRLD D+SG L++ R +T+ F+E R + YWA+VVG
Sbjct: 88 PWLAHRLDADTSGCLLVARRKTALIEAQKAFQE--------------RQAHKLYWAVVVG 133
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I APL + + S VV+ A TR++V+ S G W++L
Sbjct: 134 DLPQDSGEIDAPL---LRQSDASGWRMVVDA----KGDEARTRWRVLGRS-KGLCWVELE 185
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ R+HCAE LGTPI+GD YG
Sbjct: 186 LLTGRTHQARIHCAE-LGTPILGDPVYG 212
>gi|404498283|ref|YP_006722389.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|418068066|ref|ZP_12705386.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78195880|gb|ABB33647.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|373557678|gb|EHP84072.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 319
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++G+LV+ + S L FRE T ++R Y ALV G
Sbjct: 132 PGIVHRIDKDTTGVLVVAKNDRSHEGLARQFREHT--------------IKRIYLALVFG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+P+ G I +G+ +DR+ + + + +HAVT ++V+ G T L+L
Sbjct: 178 SPKTDTGRIEGAIGR-----HPTDRLRM--SGKAKHGKHAVTHWKVLA-RYPGMTLLRLR 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH AE G P+VGD YG
Sbjct: 230 LETGRTHQIRVHLAES-GHPLVGDEVYG 256
>gi|339498527|ref|ZP_08659503.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 312
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + ++ + SA + + N QR Y ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDSA---------HQALSAQLKAHKN-----QRIYIALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G ISAPL + VD K +T + A+T +QV+K GYT LK+
Sbjct: 175 EFQEDTGTISAPLARHKVDR-KKQAVT-------EGGREAITHFQVLKRFV-GYTLLKVR 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PIVGD YG
Sbjct: 226 LETGRTHQIRVHMTYI-GHPIVGDPVYG 252
>gi|296136842|ref|YP_003644084.1| RluA family pseudouridine synthase [Thiomonas intermedia K12]
gi|295796964|gb|ADG31754.1| pseudouridine synthase, RluA family [Thiomonas intermedia K12]
Length = 329
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 23/178 (12%)
Query: 3 VQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ I+ L A T + E LVHRLDRD+SG+L++ + +++ T LH+ RE
Sbjct: 108 VHGGSGVSFGVIEALRAARPTAKFLE---LVHRLDRDTSGLLLIAKKRSALTTLHAALRE 164
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
+ +KR Y ALV G +I APL K ++ NG+ R+ V
Sbjct: 165 R---------HADKR-----YLALVAGLWTRGAVMIEAPLHKYLLANGER-RVRVDAQQG 209
Query: 122 IMSAQHAVTRYQVIKPSC---HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
S ++ Q P G + ++ LTGR HQ+RVH A G PIVGD KYG
Sbjct: 210 QESRTQFRSQEQFALPGLGPWGGLSLMQARLLTGRTHQIRVHLAHC-GHPIVGDDKYG 266
>gi|297579532|ref|ZP_06941460.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
RC385]
gi|297537126|gb|EFH75959.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
RC385]
Length = 315
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|300716227|ref|YP_003741030.1| 23S rRNA pseudouridylate synthase [Erwinia billingiae Eb661]
gi|299062063|emb|CAX59179.1| 23S rRNA pseudouridylate synthase [Erwinia billingiae Eb661]
Length = 320
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SGIL++ + +++ LH REK +Q+ Y ALV G+
Sbjct: 139 LVHRLDRDTSGILLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGSW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ APL K ++ +G +RI VN++ + + TR++V + H T +K SP+
Sbjct: 185 PSHIKAVQAPLLKNILQSG--ERIVRVNSE----GKPSETRFKVEERYAHA-TLVKASPI 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH G PI D +YG
Sbjct: 238 TGRTHQIRVHTLHA-GHPIAFDDRYG 262
>gi|237808945|ref|YP_002893385.1| RluA family pseudouridine synthase [Tolumonas auensis DSM 9187]
gi|237501206|gb|ACQ93799.1| pseudouridine synthase, RluA family [Tolumonas auensis DSM 9187]
Length = 314
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ + E L A + E LVHRLDRD+SG+L++ + +++ LH
Sbjct: 110 LAVHGGSGLSFGVIEGLRALRPESRFLE---LVHRLDRDTSGLLLVAKKRSALKHLHEQL 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +++ Y ALV G + ++APL K ++ +G +RI VN+
Sbjct: 167 RVKT--------------MRKQYLALVRGQWQPHVKAVNAPLLKNILQSG--ERIVRVNS 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+Q+++ H T + SP+TGR HQ+RVH G PI D KYG
Sbjct: 211 E----GKPSETRFQIMQKFAHA-TLVMASPITGRTHQIRVHTLHA-GHPIACDDKYG 261
>gi|153830613|ref|ZP_01983280.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
623-39]
gi|148873911|gb|EDL72046.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
623-39]
Length = 315
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|350531917|ref|ZP_08910858.1| ribosomal large subunit pseudouridine synthase C [Vibrio
rotiferianus DAT722]
Length = 314
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILEKFDQA-TLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|183179760|ref|ZP_02957971.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MZO-3]
gi|183013171|gb|EDT88471.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MZO-3]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 67 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 123
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 124 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 163
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 164 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 213
>gi|443315971|ref|ZP_21045436.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
gi|442784409|gb|ELR94284.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 21/148 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ +T + L + + KT +R Y +V G
Sbjct: 128 PGIVHRLDKDTTGAIVVAKTDLAHQDLQAQMKAKTA--------------RREYLGVVYG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
PR G + APLG+ D + +TV ++AVT +QV + +T +
Sbjct: 174 APREQGGTVDAPLGRDPSDRKRQAIVTVEK-----GGRNAVTHWQV-QERIGNFTVMAFR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVHCA LG PIVGD YG
Sbjct: 228 LETGRTHQIRVHCAH-LGHPIVGDPVYG 254
>gi|28572410|ref|NP_789190.1| pseudouridine synthase [Tropheryma whipplei TW08/27]
gi|28410541|emb|CAD66927.1| putative pseudouridine synthase [Tropheryma whipplei TW08/27]
Length = 303
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 28/148 (18%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD ++SG++V+ ++ + L + FR+ R + + Y ALV G P
Sbjct: 126 VVHRLDANTSGLMVLAKSDLAYHNLKAAFRD--------------RAIHKRYKALVQGYP 171
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV--IKPSCHGYTWLKLS 148
S GVI+AP+G+ D DR + S + AVT+Y + P G+T L ++
Sbjct: 172 DPSSGVINAPIGR---DLKHRDRFCI-----DYSGRDAVTQYSTEEVYP---GFTLLSVA 220
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+RVH + L P+VGD KYG
Sbjct: 221 PKTGRTHQIRVHFS-ALRHPLVGDVKYG 247
>gi|156975190|ref|YP_001446096.1| rRNA ribosomal pseudouridine synthase [Vibrio harveyi ATCC
BAA-1116]
gi|156526784|gb|ABU71870.1| hypothetical protein VIBHAR_02917 [Vibrio harveyi ATCC BAA-1116]
Length = 339
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 139 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 195
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 196 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 235
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 236 ---GKPSETRFKVLE-RFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 285
>gi|153216570|ref|ZP_01950521.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
1587]
gi|229513684|ref|ZP_04403146.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
TMA 21]
gi|229521940|ref|ZP_04411357.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
TM 11079-80]
gi|229524038|ref|ZP_04413443.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
bv. albensis VL426]
gi|254226963|ref|ZP_04920527.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
V51]
gi|254286849|ref|ZP_04961802.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
AM-19226]
gi|417821374|ref|ZP_12467988.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE39]
gi|419830494|ref|ZP_14353979.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-1A2]
gi|419834175|ref|ZP_14357630.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-61A2]
gi|421344594|ref|ZP_15794997.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-43B1]
gi|421351761|ref|ZP_15802126.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-25]
gi|422923328|ref|ZP_16956484.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
BJG-01]
gi|424017200|ref|ZP_17757029.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-55B2]
gi|424591693|ref|ZP_18031119.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1037(10)]
gi|424629982|ref|ZP_18068269.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-51A1]
gi|424637108|ref|ZP_18075116.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-55A1]
gi|424660543|ref|ZP_18097790.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-16]
gi|429886537|ref|ZP_19368089.1| Ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
PS15]
gi|124114199|gb|EAY33019.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
1587]
gi|125620503|gb|EAZ48873.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
V51]
gi|150423140|gb|EDN15088.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
AM-19226]
gi|229337619|gb|EEO02636.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
bv. albensis VL426]
gi|229340865|gb|EEO05870.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
TM 11079-80]
gi|229348865|gb|EEO13822.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
TMA 21]
gi|340039005|gb|EGQ99979.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE39]
gi|341644185|gb|EGS68420.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
BJG-01]
gi|395940674|gb|EJH51355.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-43B1]
gi|395952206|gb|EJH62820.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-25]
gi|408023657|gb|EKG60816.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-55A1]
gi|408030920|gb|EKG67563.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1037(10)]
gi|408050452|gb|EKG85615.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-16]
gi|408054770|gb|EKG89729.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-51A1]
gi|408620267|gb|EKK93279.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-1A2]
gi|408648997|gb|EKL20314.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-61A2]
gi|408859760|gb|EKL99414.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-55B2]
gi|429226579|gb|EKY32684.1| Ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
PS15]
Length = 315
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|404494901|ref|YP_006719007.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|418067555|ref|ZP_12704894.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78192530|gb|ABB30297.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|373558553|gb|EHP84889.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 295
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 66/211 (31%)
Query: 22 TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
T EP R++HRLDR +SG+++ +T+ +A + + +E +++
Sbjct: 120 TLGSQEPARVIHRLDRGTSGVMIFPKTKRAAAHISAQLKEGR--------------VEKV 165
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 141
YWALV P + ++AP+ KV S R V + A+TR+ VI G
Sbjct: 166 YWALVTAEPASDQWEVNAPIAKV-----GSARYGVAT-----PGREALTRFAVIARGTCG 215
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 201
++ PLTGR HQ+RVH A G PIVGD YG
Sbjct: 216 -VLVEARPLTGRTHQIRVHLAHC-GLPIVGDPTYGG------------------------ 249
Query: 202 EKTLHFGLDLESGSILEKQPRLHLHCKEMTL 232
EK PR+ LHC+ M+
Sbjct: 250 ----------------EKAPRMMLHCRAMSF 264
>gi|444426075|ref|ZP_21221502.1| ribosomal large subunit pseudouridine synthase C [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|444240699|gb|ELU52235.1| ribosomal large subunit pseudouridine synthase C [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 314
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-RFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|381150267|ref|ZP_09862136.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
gi|380882239|gb|EIC28116.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
Length = 320
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 26/176 (14%)
Query: 2 PVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
PV GG G+ I E L + E LVHRLDRD+SG L++ + +++ LH +FR
Sbjct: 116 PVHGGSGVDAGIIEGLRRLRPEATFLE---LVHRLDRDTSGCLIVAKKRSALRRLHELFR 172
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ + + Y AL+ G K V++APL K V G +R+ VV+
Sbjct: 173 DDH--------------IHKTYLALLAGQWARKKMVVNAPLLKNVSKGG--ERMVVVSQA 216
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+A+ R ++ K + T ++ +P TGR HQ+RVH A LG PIVGD +YG
Sbjct: 217 G-KAAETVFRRLKLFKNA----TLIEATPKTGRTHQIRVHAA-WLGHPIVGDERYG 266
>gi|330446422|ref|ZP_08310074.1| 23S rRNA pseudouridine synthase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490613|dbj|GAA04571.1| 23S rRNA pseudouridine synthase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 314
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRKLQEQFRN 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S ++APL K V++ I VN
Sbjct: 171 KT--------------VQKYYFALVMGEWKASCKKVTAPLLKNEVNS-----IVRVNP-- 209
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 210 --QGKPSDTRFKVLERFPQA-TLVQASPVTGRTHQIRVHC-QYEGHPIAWDDRYG 260
>gi|407718127|ref|YP_006795532.1| 23S RNA-specific pseudouridylate synthase [Leuconostoc carnosum
JB16]
gi|407241883|gb|AFT81533.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc carnosum
JB16]
Length = 304
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + + SA +D+ N QR Y+ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDEA---------HQALSAQLKDHKN-----QRIYYALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I+AP+ + VD K + + A+T ++V+K GYT LK+
Sbjct: 175 EFTEESGTINAPIARHKVDRKKQAVQS--------GGREAITHFEVLKRYV-GYTLLKVQ 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G P+VGD YG
Sbjct: 226 LETGRTHQIRVHMTYI-GHPVVGDPVYG 252
>gi|15642030|ref|NP_231662.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O1 biovar El Tor str. N16961]
gi|121729883|ref|ZP_01682310.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
V52]
gi|147673109|ref|YP_001217555.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O395]
gi|227082155|ref|YP_002810706.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
M66-2]
gi|227118475|ref|YP_002820371.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O395]
gi|229507883|ref|ZP_04397388.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
BX 330286]
gi|229511882|ref|ZP_04401361.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
B33]
gi|229519018|ref|ZP_04408461.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
RC9]
gi|229607428|ref|YP_002878076.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MJ-1236]
gi|254849115|ref|ZP_05238465.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MO10]
gi|255745223|ref|ZP_05419172.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholera
CIRS 101]
gi|262167652|ref|ZP_06035355.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
RC27]
gi|298497942|ref|ZP_07007749.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MAK 757]
gi|360035911|ref|YP_004937674.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O1 str. 2010EL-1786]
gi|379741853|ref|YP_005333822.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
IEC224]
gi|417814067|ref|ZP_12460720.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-49A2]
gi|417817805|ref|ZP_12464434.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HCUF01]
gi|418335046|ref|ZP_12943959.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-06A1]
gi|418338659|ref|ZP_12947553.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-23A1]
gi|418346581|ref|ZP_12951341.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-28A1]
gi|418350340|ref|ZP_12955071.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-43A1]
gi|418355489|ref|ZP_12958208.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-61A1]
gi|419827000|ref|ZP_14350499.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1033(6)]
gi|421318447|ref|ZP_15769015.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1032(5)]
gi|421321795|ref|ZP_15772348.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1038(11)]
gi|421325596|ref|ZP_15776120.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1041(14)]
gi|421329255|ref|ZP_15779765.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1042(15)]
gi|421333163|ref|ZP_15783640.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1046(19)]
gi|421336753|ref|ZP_15787214.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1048(21)]
gi|421340181|ref|ZP_15790613.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-20A2]
gi|421348309|ref|ZP_15798686.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-46A1]
gi|422897132|ref|ZP_16934581.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-40A1]
gi|422903332|ref|ZP_16938307.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-48A1]
gi|422907216|ref|ZP_16942019.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-70A1]
gi|422914063|ref|ZP_16948569.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HFU-02]
gi|422926269|ref|ZP_16959283.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-38A1]
gi|423145589|ref|ZP_17133183.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-19A1]
gi|423150265|ref|ZP_17137579.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-21A1]
gi|423154083|ref|ZP_17141264.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-22A1]
gi|423157168|ref|ZP_17144261.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-32A1]
gi|423160738|ref|ZP_17147678.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-33A2]
gi|423165561|ref|ZP_17152288.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-48B2]
gi|423731576|ref|ZP_17704879.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-17A1]
gi|423768862|ref|ZP_17713008.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-50A2]
gi|423895466|ref|ZP_17727213.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-62A1]
gi|423930903|ref|ZP_17731606.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-77A1]
gi|424003018|ref|ZP_17746093.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-17A2]
gi|424006807|ref|ZP_17749777.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-37A1]
gi|424024789|ref|ZP_17764440.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-62B1]
gi|424027675|ref|ZP_17767278.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-69A1]
gi|424586949|ref|ZP_18026528.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1030(3)]
gi|424595598|ref|ZP_18034919.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1040(13)]
gi|424599516|ref|ZP_18038695.1| pseudouridine synthase, RluA family protein [Vibrio Cholerae
CP1044(17)]
gi|424602236|ref|ZP_18041377.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1047(20)]
gi|424607208|ref|ZP_18046150.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1050(23)]
gi|424611029|ref|ZP_18049868.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-39A1]
gi|424613841|ref|ZP_18052629.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-41A1]
gi|424617818|ref|ZP_18056490.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-42A1]
gi|424622603|ref|ZP_18061108.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-47A1]
gi|424645566|ref|ZP_18083302.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-56A2]
gi|424653331|ref|ZP_18090711.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-57A2]
gi|424657155|ref|ZP_18094440.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-81A2]
gi|440710226|ref|ZP_20890877.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
4260B]
gi|443504386|ref|ZP_21071344.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-64A1]
gi|443508284|ref|ZP_21075047.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-65A1]
gi|443512126|ref|ZP_21078764.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-67A1]
gi|443515684|ref|ZP_21082195.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-68A1]
gi|443519477|ref|ZP_21085873.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-71A1]
gi|443524367|ref|ZP_21090580.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-72A2]
gi|443531964|ref|ZP_21097978.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-7A1]
gi|443539307|ref|ZP_21105161.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-81A1]
gi|449055548|ref|ZP_21734216.1| Ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O1 str. Inaba G4222]
gi|14423896|sp|Q9KQH0.1|RLUC_VIBCH RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|9656573|gb|AAF95176.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O1 biovar El Tor str. N16961]
gi|121628373|gb|EAX60874.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
V52]
gi|146314992|gb|ABQ19531.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O395]
gi|227010043|gb|ACP06255.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
M66-2]
gi|227013925|gb|ACP10135.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O395]
gi|229343707|gb|EEO08682.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
RC9]
gi|229351847|gb|EEO16788.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
B33]
gi|229355388|gb|EEO20309.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
BX 330286]
gi|229370083|gb|ACQ60506.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MJ-1236]
gi|254844820|gb|EET23234.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MO10]
gi|255737053|gb|EET92449.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholera
CIRS 101]
gi|262023857|gb|EEY42555.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
RC27]
gi|297542275|gb|EFH78325.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
MAK 757]
gi|340036553|gb|EGQ97529.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-49A2]
gi|340037528|gb|EGQ98503.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HCUF01]
gi|341620976|gb|EGS46728.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-70A1]
gi|341621176|gb|EGS46924.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-48A1]
gi|341621922|gb|EGS47608.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-40A1]
gi|341637287|gb|EGS61975.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HFU-02]
gi|341646051|gb|EGS70169.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-38A1]
gi|356417070|gb|EHH70689.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-06A1]
gi|356418257|gb|EHH71860.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-21A1]
gi|356422803|gb|EHH76272.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-19A1]
gi|356428643|gb|EHH81869.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-22A1]
gi|356430301|gb|EHH83510.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-23A1]
gi|356432886|gb|EHH86081.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-28A1]
gi|356439442|gb|EHH92411.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-32A1]
gi|356444836|gb|EHH97645.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-43A1]
gi|356445479|gb|EHH98283.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-33A2]
gi|356450705|gb|EHI03419.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-48B2]
gi|356451987|gb|EHI04666.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-61A1]
gi|356647065|gb|AET27120.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O1 str. 2010EL-1786]
gi|378795363|gb|AFC58834.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
IEC224]
gi|395916705|gb|EJH27535.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1032(5)]
gi|395917434|gb|EJH28262.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1041(14)]
gi|395918789|gb|EJH29613.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1038(11)]
gi|395927789|gb|EJH38552.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1042(15)]
gi|395928565|gb|EJH39318.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1046(19)]
gi|395931852|gb|EJH42596.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1048(21)]
gi|395939464|gb|EJH50146.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-20A2]
gi|395942888|gb|EJH53564.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-46A1]
gi|395958635|gb|EJH69114.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-56A2]
gi|395959226|gb|EJH69669.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-57A2]
gi|395961929|gb|EJH72238.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-42A1]
gi|395970717|gb|EJH80457.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-47A1]
gi|395972946|gb|EJH82520.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1030(3)]
gi|395975382|gb|EJH84873.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1047(20)]
gi|408007138|gb|EKG45245.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-39A1]
gi|408012686|gb|EKG50458.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-41A1]
gi|408031978|gb|EKG68578.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1040(13)]
gi|408041533|gb|EKG77639.1| pseudouridine synthase, RluA family protein [Vibrio Cholerae
CP1044(17)]
gi|408042906|gb|EKG78936.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1050(23)]
gi|408053162|gb|EKG88182.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-81A2]
gi|408607790|gb|EKK81193.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1033(6)]
gi|408624198|gb|EKK97150.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-17A1]
gi|408633606|gb|EKL05931.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-50A2]
gi|408654335|gb|EKL25477.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-77A1]
gi|408655266|gb|EKL26391.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-62A1]
gi|408845415|gb|EKL85531.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-37A1]
gi|408846188|gb|EKL86300.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-17A2]
gi|408870275|gb|EKM09555.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-62B1]
gi|408878978|gb|EKM17971.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-69A1]
gi|439974449|gb|ELP50626.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
4260B]
gi|443431331|gb|ELS73883.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-64A1]
gi|443435226|gb|ELS81370.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-65A1]
gi|443439109|gb|ELS88824.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-67A1]
gi|443443094|gb|ELS96396.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-68A1]
gi|443446895|gb|ELT03551.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-71A1]
gi|443449701|gb|ELT09992.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-72A2]
gi|443457354|gb|ELT24751.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-7A1]
gi|443465407|gb|ELT40067.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-81A1]
gi|448264587|gb|EMB01824.1| Ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
O1 str. Inaba G4222]
Length = 315
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|417825278|ref|ZP_12471866.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE48]
gi|419837752|ref|ZP_14361190.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-46B1]
gi|421354694|ref|ZP_15805026.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-45]
gi|422910878|ref|ZP_16945506.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-09]
gi|422917879|ref|ZP_16952197.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-02A1]
gi|423735706|ref|ZP_17708902.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-41B1]
gi|423822780|ref|ZP_17716790.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-55C2]
gi|423856746|ref|ZP_17720598.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-59A1]
gi|423883049|ref|ZP_17724186.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-60A1]
gi|423956537|ref|ZP_17735091.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-40]
gi|423985325|ref|ZP_17738642.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-46]
gi|423998306|ref|ZP_17741558.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-02C1]
gi|424010044|ref|ZP_17752980.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-44C1]
gi|424020124|ref|ZP_17759910.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-59B1]
gi|424625498|ref|ZP_18063959.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-50A1]
gi|424634029|ref|ZP_18072129.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-52A1]
gi|424641016|ref|ZP_18078899.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-56A1]
gi|424649082|ref|ZP_18086745.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-57A1]
gi|443528000|ref|ZP_21094048.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-78A1]
gi|340046763|gb|EGR07693.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE48]
gi|341632752|gb|EGS57609.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-09]
gi|341636761|gb|EGS61455.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-02A1]
gi|395953819|gb|EJH64432.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-45]
gi|408012051|gb|EKG49847.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-50A1]
gi|408017948|gb|EKG55420.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-52A1]
gi|408023162|gb|EKG60341.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-56A1]
gi|408032601|gb|EKG69182.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-57A1]
gi|408629564|gb|EKL02245.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-41B1]
gi|408634756|gb|EKL06991.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-55C2]
gi|408640538|gb|EKL12327.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-59A1]
gi|408641173|gb|EKL12954.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-60A1]
gi|408657349|gb|EKL28429.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-40]
gi|408663929|gb|EKL34774.1| pseudouridine synthase, RluA family protein [Vibrio cholerae HE-46]
gi|408852661|gb|EKL92483.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-02C1]
gi|408856300|gb|EKL95995.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-46B1]
gi|408863572|gb|EKM03049.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-44C1]
gi|408867218|gb|EKM06580.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-59B1]
gi|443453516|gb|ELT17335.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-78A1]
Length = 299
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 99 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 155
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 156 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 195
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 196 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 245
>gi|443535764|ref|ZP_21101641.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-80A1]
gi|443461040|gb|ELT32114.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HC-80A1]
Length = 299
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 99 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 155
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 156 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 195
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 196 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 245
>gi|392551389|ref|ZP_10298526.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas spongiae
UST010723-006]
Length = 319
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 22/176 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E A + D LVHRLDRD+SG L++ + ++ LH R
Sbjct: 111 MAVHGGSGLSYGLIE-ALRSIRPD-ERNLELVHRLDRDTSGCLLVSKKRSVLRGLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G+ ++ PL K + +G +R+ V+
Sbjct: 169 EKT--------------MEKNYWALVTGSWASKIKNVTEPLRKNTLQSG--ERVVRVDEA 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ +Q TR++V++ T ++ SP+TGR HQ+RVH + G PI D KYG
Sbjct: 213 EGKPSQ---TRFRVLERFGQFATLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYG 264
>gi|296284607|ref|ZP_06862605.1| pseudouridine synthase D large subunit [Citromicrobium
bathyomarinum JL354]
Length = 314
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 20/150 (13%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHR+D+D+SG+LV+ +T + L F + + S R Y A+
Sbjct: 130 ERPGIVHRIDKDTSGLLVVAKTDAAHEGLARQFADHSIS--------------RRYVAVC 175
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK 146
G PR ++G I A LG+ D K V + Q +HAVT Y+ K + + L+
Sbjct: 176 AGQPRPAEGTIDARLGRSDRDRKK----MAVLDPQSTRGKHAVTHYRTTK-TFGVASILE 230
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVHCA + G P++GD +YG
Sbjct: 231 CRLETGRTHQVRVHCASI-GHPLLGDPQYG 259
>gi|153820359|ref|ZP_01973026.1| ribosomal large subunit pseudouridine synthase C, partial [Vibrio
cholerae NCTC 8457]
gi|126509095|gb|EAZ71689.1| ribosomal large subunit pseudouridine synthase C [Vibrio cholerae
NCTC 8457]
Length = 310
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 110 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 166
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 167 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 206
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 207 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 256
>gi|378708113|ref|YP_005273007.1| RluA family pseudouridine synthase [Shewanella baltica OS678]
gi|418026179|ref|ZP_12665151.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
gi|315267102|gb|ADT93955.1| pseudouridine synthase, RluA family [Shewanella baltica OS678]
gi|353534500|gb|EHC04070.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
Length = 319
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 142 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 188 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVHC + G PI D KY Q
Sbjct: 241 TGRTHQIRVHC-QFAGHPIACDDKYSEQA 268
>gi|340354010|ref|ZP_08676805.1| ribosomal large subunit pseudouridine synthase [Prevotella pallens
ATCC 700821]
gi|339607930|gb|EGQ12853.1| ribosomal large subunit pseudouridine synthase [Prevotella pallens
ATCC 700821]
Length = 221
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 25/178 (14%)
Query: 3 VQGGIGIRRSIDELAATCLTYDYSEPPRL----VHRLDRDSSGILVMGRTQTSATVLHSI 58
VQG + + E + Y++P + VHRLDR SGI+V +T + + L+++
Sbjct: 21 VQGDKTGDKPLSETIKEWIKEKYAKPGNVFLGVVHRLDRPVSGIVVFAKTSKALSRLNNM 80
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
FR +++ YWA+V P + A L +V N K ++ V N
Sbjct: 81 FRNGE--------------VRKTYWAMVQTAPNMPE----ATLTNWLVRNEKQNKSYVYN 122
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
N+ + +A+ A+ +Y+ I + H YT L+++ LTGR HQ+R A +G PI GD KYG
Sbjct: 123 NE-MPNAKQAILKYKTIGQTEH-YTLLEVNLLTGRHHQIRCQLA-AMGCPIKGDLKYG 177
>gi|307151795|ref|YP_003887179.1| pseudouridine synthase [Cyanothece sp. PCC 7822]
gi|306982023|gb|ADN13904.1| pseudouridine synthase [Cyanothece sp. PCC 7822]
Length = 562
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD+D+SGIL++ R + L FR+ R + + Y ALV G
Sbjct: 403 VVHRLDQDTSGILLLARHRQIYNHLAQQFRQ--------------RKIHKVYHALVKGGV 448
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
KG I+ PL D R V + ++T +QVI + +T L+ P+
Sbjct: 449 SAQKGTINLPLWG---DPNTRPRQKV----DFCYGKESITHFQVIAVA-ENFTRLEFIPV 500
Query: 151 TGRKHQLRVHCAEV--LGTPIVGDYKYGWQTHRKWKQFHPSDLS 192
TGR HQ+RVHCA+ LGTPI+GD YG ++ H LS
Sbjct: 501 TGRTHQIRVHCADQNGLGTPIIGDRLYGHESATTRLHLHAYSLS 544
>gi|403383409|ref|ZP_10925466.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC30]
Length = 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L +KT + R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGLLMVAKNDLAHEGLVQQLVDKTVT--------------RRYTALVHG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
KG I AP+G+ D ++ VV+N +HAVT +QVI YT ++
Sbjct: 177 HIPHDKGTIDAPIGR---DQKDRQKMGVVDN-----GKHAVTHFQVIGRFGTDYTLVQCR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH +G P+VGD KYG
Sbjct: 229 LETGRTHQIRVHM-NYIGYPLVGDPKYG 255
>gi|381394076|ref|ZP_09919794.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330348|dbj|GAB54927.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 315
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 26/184 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A Y E LVHRLDRD+SG +V+ + +++ LH
Sbjct: 109 MAVHGGSGLSYGLIEALRALRPNSPYLE---LVHRLDRDTSGCIVLAKKRSALRHLHEQL 165
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALV G + +SA L K + +G +R+ +
Sbjct: 166 RDKK--------------MDKTYHALVAGHWPEKRSKVSAGLQKNQIQSG--ERMVFADE 209
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ +H+ TR+ VI H + L+ P+TGR HQ+RVHC + G I D KYG +
Sbjct: 210 N----GKHSETRFSVIGYYPHA-SLLEAKPITGRTHQIRVHC-QFAGHAIANDSKYGDEA 263
Query: 180 HRKW 183
K+
Sbjct: 264 FTKY 267
>gi|443327970|ref|ZP_21056575.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
gi|442792379|gb|ELS01861.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
Length = 322
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 25/152 (16%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHRLD+D++G +V+ ++ + L + + KT +R YW +V
Sbjct: 142 ERPGIVHRLDKDTTGAIVVAKSDRAHQHLQAQIKAKTA--------------RREYWGVV 187
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDR--ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTW 144
G P+ G I+ P+G+ KSDR + V+ DQ + A+T + +++ YT
Sbjct: 188 CGCPKTESGQINLPIGR-----HKSDRKKMAVIPVDQ--GGREAITHWSILE-RLSNYTL 239
Query: 145 LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ TGR HQ+RVHC G PIVGD YG
Sbjct: 240 MQFLLETGRTHQIRVHCT-YNGNPIVGDMLYG 270
>gi|39995193|ref|NP_951144.1| 23S rRNA synthase [Geobacter sulfurreducens PCA]
gi|409910641|ref|YP_006889106.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
sulfurreducens KN400]
gi|39981955|gb|AAR33417.1| 23S rRNA synthase [Geobacter sulfurreducens PCA]
gi|298504197|gb|ADI82920.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
sulfurreducens KN400]
Length = 322
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ ++ + L F + T ++R Y ALV G
Sbjct: 135 PGIVHRIDKDTSGVLVVAKSDRAHESLSRQFHDHT--------------VKRVYLALVYG 180
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+PR KG I +G+ D K + +HAVT ++V G T L+L
Sbjct: 181 SPREDKGRIEGAIGRHPTDRKKM-------SGAARHGKHAVTHWRV-AARFTGVTLLRLR 232
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH AE G P+VGD YG
Sbjct: 233 LETGRTHQIRVHMAEA-GFPLVGDEVYG 259
>gi|420155633|ref|ZP_14662491.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
gi|394758862|gb|EJF41698.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
Length = 308
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L + +E +F+ R Y A+V G
Sbjct: 133 PGIVHRIDKDTSGLLIVAKNDFAHQSLAAQIKEHSFT--------------REYEAVVYG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
R G + AP+G+ D K +TV + ++ AVT YQV++ G+++++L
Sbjct: 179 HLREQSGTVDAPIGRHPTDRKK---MTVTQKN----SRRAVTHYQVLE-ELPGFSYVRLR 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A LG P+ GD YG
Sbjct: 231 LETGRTHQIRVHMA-YLGHPVAGDPVYG 257
>gi|269967347|ref|ZP_06181408.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus 40B]
gi|269828055|gb|EEZ82328.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus 40B]
Length = 368
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 168 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 224
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y ALV+G + S V++APL K V++ I VN +
Sbjct: 225 KT--------------VKKFYLALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 264
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 265 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 314
>gi|253681471|ref|ZP_04862268.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
gi|253561183|gb|EES90635.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
Length = 304
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + VL +E + ++R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNNKAHEVLAEQLKEHS--------------MKREYIALVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G I PLG+ DRI + + ++A+T Y+V+K T +K
Sbjct: 177 ILKKDNGFIDKPLGR-----NPKDRIKMA---VVQEGKNAITHYEVLK-RFKKNTLVKCI 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDL 191
TGR HQ+RVH + +G P+VGD YG++ R K + H L
Sbjct: 228 LETGRTHQIRVHMS-YIGHPLVGDPMYGFKKQRFKLKGQMLHAKKL 272
>gi|117921007|ref|YP_870199.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
gi|117613339|gb|ABK48793.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
Length = 329
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ +H R K +Q+ Y ALV G
Sbjct: 152 LVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKK--------------MQKDYLALVKGEW 197
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
V+ PL K+ + +G +RI VN + + + TR+++++ G T ++ SP+
Sbjct: 198 SAQDKVVKQPLLKLTLKSG--ERIVRVNAE----GKPSETRFKIVQ-RYQGCTLVQASPV 250
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVHC + +G PI D KY Q
Sbjct: 251 TGRTHQIRVHC-QYMGHPIACDEKYSEQA 278
>gi|332306496|ref|YP_004434347.1| RluA family pseudouridine synthase [Glaciecola sp. 4H-3-7+YE-5]
gi|332173825|gb|AEE23079.1| pseudouridine synthase, RluA family [Glaciecola sp. 4H-3-7+YE-5]
Length = 318
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ I+ L A + E LVHRLDRD+SG LV+ + +++ LH
Sbjct: 112 MAVHGGSGLSFGVIEALRALRPQARFLE---LVHRLDRDTSGCLVIAKKRSALKNLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K + + Y ALVVG ++ ++APL K ++ +G +R+ V++
Sbjct: 169 RDKK--------------MDKRYHALVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDS 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR++V++ G T ++ SP+TGR HQ+RVHC + PI D KYG
Sbjct: 213 E----GKPSETRFRVLERYV-GATLVEASPITGRTHQIRVHCLHAV-HPIACDDKYG 263
>gi|427703989|ref|YP_007047211.1| RluA family pseudouridine synthase [Cyanobium gracile PCC 6307]
gi|427347157|gb|AFY29870.1| pseudouridine synthase, RluA family [Cyanobium gracile PCC 6307]
Length = 316
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 22/148 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ ++Q + L ++RI R Y A+V G
Sbjct: 139 PGIVHRLDKDTTGCIVVAKSQEALVKLQVQI--------------QQRIASREYLAVVHG 184
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I A +G+ VD K +T + +HA T +++I+P Y L+
Sbjct: 185 RPAAESGTIVAAIGRHPVDRKKYAVVTDA------TGRHACTHWRLIEP-LGDYALLRFK 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVHCA G PIVGD YG
Sbjct: 238 LDTGRTHQIRVHCAHT-GHPIVGDATYG 264
>gi|348029143|ref|YP_004871829.1| ribosomal large subunit pseudouridine synthase C [Glaciecola
nitratireducens FR1064]
gi|347946486|gb|AEP29836.1| ribosomal large subunit pseudouridine synthase C [Glaciecola
nitratireducens FR1064]
Length = 315
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 30/179 (16%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ + E L A + + E LVHRLDRD+SG L++ + +++ LH
Sbjct: 109 LAVHGGSGLNFGVIEGLRALRPQHQFLE---LVHRLDRDTSGCLLIAKKRSALRDLHEQL 165
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGT--PRCSKGVISAPLGKVVVDNGKSDRITVV 117
R K + + Y ALV G C K + APL K V+ +G +R+ V
Sbjct: 166 RSKQ--------------VDKRYHALVAGEWPANCFK--VDAPLQKNVLKSG--ERLVSV 207
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+N+ + + TR++V++ H T ++ SP+TGR HQ+RVHC G I D KYG
Sbjct: 208 SNE----GKPSETRFRVLRNFTHS-TLIEASPITGRTHQIRVHCLHA-GHAIAMDSKYG 260
>gi|317498467|ref|ZP_07956761.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894160|gb|EFV16348.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 305
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++GIL++ + + H ++ + S + R Y A+V G
Sbjct: 133 PGIVHRIDKDTTGILIVCKNDMA----HQSIAKQLYDHS----------ITRKYHAIVYG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G ++AP+G+ + D K +M +HAVT Y+V+K G+T+++
Sbjct: 179 NIKEEEGTVNAPIGRSLKDRKKMG--------IVMDGKHAVTHYKVLKRLKKGFTYIECQ 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P++GD YG
Sbjct: 231 LETGRTHQIRVHMASI-KHPLLGDDVYG 257
>gi|262404383|ref|ZP_06080938.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. RC586]
gi|262349415|gb|EEY98553.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. RC586]
Length = 315
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFTEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|119775123|ref|YP_927863.1| pseudouridylate synthase [Shewanella amazonensis SB2B]
gi|119767623|gb|ABM00194.1| ribosomal large subunit pseudouridine synthase C [Shewanella
amazonensis SB2B]
Length = 330
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 32/182 (17%)
Query: 1 MPVQGG----IGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLH 56
+ V GG G+ S+ L TC + LVHRLDRD+SG+L++ + + + LH
Sbjct: 124 IAVHGGSGVDYGVIESLRSLRPTCKFLE------LVHRLDRDTSGVLLIAKKRMALRHLH 177
Query: 57 SIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 116
R K +Q+ Y ALV G + V+ APL K+ + +G +RI
Sbjct: 178 DQLRNKQ--------------MQKVYQALVRGQWQEHDRVVKAPLLKITLKSG--ERIVR 221
Query: 117 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
VN++ + + TR++V++ + ++ SP+TGR HQ+RVHC + G PI D KY
Sbjct: 222 VNSE----GKPSETRFRVLR-RFDEASLVEASPVTGRTHQIRVHC-QYQGHPIACDDKYS 275
Query: 177 WQ 178
Q
Sbjct: 276 EQ 277
>gi|18310832|ref|NP_562766.1| hypothetical protein CPE1850 [Clostridium perfringens str. 13]
gi|110801362|ref|YP_696533.1| RluA family pseudouridine synthase [Clostridium perfringens ATCC
13124]
gi|168206096|ref|ZP_02632101.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|168210787|ref|ZP_02636412.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|422346519|ref|ZP_16427433.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|422874769|ref|ZP_16921254.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
gi|18145514|dbj|BAB81556.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110676009|gb|ABG84996.1| pseudouridine synthase, RluA family [Clostridium perfringens ATCC
13124]
gi|170662443|gb|EDT15126.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170711120|gb|EDT23302.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|373226064|gb|EHP48391.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|380304410|gb|EIA16699.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
Length = 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + ++R Y+A+V G
Sbjct: 133 PGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS--------------IKREYYAIVEG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLK 146
+ G I APLG+ DR+ + + AVT Y+V+K SC + +K
Sbjct: 179 RFKKEGGTIDAPLGR-----HHRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVK 227
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+ TGR HQ+RVH A +G P++GD YG + +K Q
Sbjct: 228 CTLETGRTHQIRVHMA-FIGHPLLGDTVYGLKKQKKLSQ 265
>gi|309800529|ref|ZP_07694680.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
gi|308115840|gb|EFO53365.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
Length = 297
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDDAHLALAQELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GVI AP+G+ D K +TV + AVTR+QV++ YT L+L
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTV-------KGKPAVTRFQVLE-RFGDYTLLELQ 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 222 LETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|169343529|ref|ZP_02864528.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
gi|169298089|gb|EDS80179.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
Length = 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + ++R Y+A+V G
Sbjct: 133 PGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS--------------IKREYYAIVEG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLK 146
+ G I APLG+ DR+ + + AVT Y+V+K SC + +K
Sbjct: 179 RFKKEGGTIDAPLGR-----HHRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVK 227
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+ TGR HQ+RVH A +G P++GD YG + +K Q
Sbjct: 228 CNLETGRTHQIRVHMA-FIGHPLLGDTVYGLKKQKKLSQ 265
>gi|182625703|ref|ZP_02953472.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
gi|177909105|gb|EDT71580.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
Length = 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + ++R Y+A+V G
Sbjct: 133 PGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS--------------IKREYYAIVEG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLK 146
+ G I APLG+ DR+ + + AVT Y+V+K SC + +K
Sbjct: 179 RFKKEGGTIDAPLGR-----HHRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVK 227
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+ TGR HQ+RVH A +G P++GD YG + +K Q
Sbjct: 228 CTLETGRTHQIRVHMA-FIGHPLLGDTVYGLKKQKKLSQ 265
>gi|73666929|ref|YP_302945.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
gi|72394070|gb|AAZ68347.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
Length = 308
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 24/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG +R SI ++ E R+VHRLD+D+SGIL++ R ++ ++ F+
Sbjct: 109 VSVQGGTKVRISISDILDKIRD---GESMRIVHRLDKDTSGILMLARNARASRLIMHEFK 165
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
R +++ Y AL G P+ G I+ + K + + I N+
Sbjct: 166 N--------------RRVEKKYLALTQGIPKNDVGEINHSITKK--KHNFYENIGTGNS- 208
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q A+T + V+K + L+L P TGRKHQ+R+H + + G I+GD KYG
Sbjct: 209 ---IFQEAITSFFVLKKLPYDIGLLELKPKTGRKHQIRIHLSHI-GCSIIGDKKYG 260
>gi|293401501|ref|ZP_06645644.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452301|ref|ZP_09544216.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
gi|291305139|gb|EFE46385.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371966794|gb|EHO84276.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
Length = 305
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++G+L++ + + T L + KT + R Y+ALV G
Sbjct: 131 PGIVHRIDKDTTGLLIVAKNDKAHTALSKQLQNKT--------------VNRLYYALVHG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I AP+G+ V D K +T N A+ A T ++VI+ H YT ++
Sbjct: 177 VIEHDFGTIDAPIGRDVKDRQKM-AVTATN------AKDARTHFKVIERFAH-YTLVECR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH + + P+VGD KY ++
Sbjct: 229 LETGRTHQIRVH-MQYIKHPVVGDEKYSYR 257
>gi|168215478|ref|ZP_02641103.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
gi|182382386|gb|EDT79865.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
Length = 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + ++R Y+A+V G
Sbjct: 133 PGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS--------------IKREYYAIVEG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLK 146
+ G I APLG+ DR+ + + AVT Y+V+K SC + +K
Sbjct: 179 RFKKEGGTIDAPLGR-----HHRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVK 227
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+ TGR HQ+RVH A +G P++GD YG + +K Q
Sbjct: 228 CTLETGRTHQIRVHMA-FIGHPLLGDTVYGLKKQKKLSQ 265
>gi|167765516|ref|ZP_02437580.1| hypothetical protein CLOSS21_00010 [Clostridium sp. SS2/1]
gi|429761443|ref|ZP_19293868.1| pseudouridine synthase, RluA family [Anaerostipes hadrus DSM 3319]
gi|167712701|gb|EDS23280.1| pseudouridine synthase, RluA family [Clostridium sp. SS2/1]
gi|291558984|emb|CBL37784.1| ribosomal large subunit pseudouridine synthase D
[butyrate-producing bacterium SSC/2]
gi|429183696|gb|EKY24737.1| pseudouridine synthase, RluA family [Anaerostipes hadrus DSM 3319]
Length = 305
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++GIL++ + + H ++ + S + R Y A+V G
Sbjct: 133 PGIVHRIDKDTTGILIVCKNDMA----HQSIAKQLYDHS----------ITRKYHAIVYG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G ++AP+G+ + D K +M +HAVT Y+V+K G+T+++
Sbjct: 179 NIKEEEGTVNAPIGRSLKDRKKMG--------IVMDGKHAVTHYKVLKRLKKGFTYIECQ 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P++GD YG
Sbjct: 231 LETGRTHQIRVHMASI-KHPLLGDDVYG 257
>gi|406920680|gb|EKD58701.1| hypothetical protein ACD_56C00067G0003 [uncultured bacterium]
Length = 316
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 20/157 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ R + F+A KE+ N R +++ Y A+ G
Sbjct: 137 PGIVHRLDKDTSGVIVVARNMNA------------FNALKENFKN--RNVEKQYLAIAKG 182
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +GVI P+ K + ++ NN + + + A T ++V + Y +++
Sbjct: 183 IFKEKEGVIDKPIAK---SSSYRKQVIARNNTKTI-IRPAETHFKVTE-EFDEYALVEVK 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
P TGR HQ+R+H A + G PIVGD YG + K+
Sbjct: 238 PKTGRTHQIRIHLASI-GHPIVGDMVYGTDVQKNAKK 273
>gi|146318440|ref|YP_001198152.1| YlyB [Streptococcus suis 05ZYH33]
gi|145689246|gb|ABP89752.1| YlyB [Streptococcus suis 05ZYH33]
Length = 309
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + T L + ++K K + R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDK------------KSL--RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GVI AP+G+ D K +T + AVTR+QV++ YT ++L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RFGDYTLVELT 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 222 LETGRTHQIRVHMA-YIGHPVAGDEAYG 248
>gi|333908045|ref|YP_004481631.1| RluA family pseudouridine synthase [Marinomonas posidonica
IVIA-Po-181]
gi|333478051|gb|AEF54712.1| pseudouridine synthase, RluA family [Marinomonas posidonica
IVIA-Po-181]
Length = 322
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 21/145 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG++++ + + LH+ REK +Q+ Y ALV G+
Sbjct: 144 LVHRLDRDTSGLIMIAKKRAVLKELHTALREKEG-------------VQKTYLALVYGSW 190
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
K ++APL K + +G +R+ V+ D + ++T +++++ GY+ ++ P+
Sbjct: 191 PKRKQQVNAPLLKNELKSG--ERVVKVHTD----GKESLTLFKLVR-QFEGYSLIECEPV 243
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH G PIVGD KY
Sbjct: 244 TGRTHQIRVHTLHA-GYPIVGDDKY 267
>gi|374307914|ref|YP_005054345.1| RluA family pseudouridine synthase [Filifactor alocis ATCC 35896]
gi|291166075|gb|EFE28121.1| pseudouridine synthase, RluA family [Filifactor alocis ATCC 35896]
Length = 298
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 32/169 (18%)
Query: 16 LAATCLTYDYS--------EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSAS 67
L T L Y S E R + RLDRD+SGIL++ + + ++
Sbjct: 110 LTGTLLNYMESWFRQNGILEKVRFISRLDRDTSGILLIAKNR--------------YAHH 155
Query: 68 KEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 127
+ ++ ++Q+ Y AL+ G + +G I+AP+G+ D + + + Q
Sbjct: 156 RMSQAHQDMMMQKTYVALIEGKMKRQEGEINAPIGRRENDG--------IKREVMEDGQT 207
Query: 128 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
A+T+Y+V+K ++ ++L+P+TGR HQLR H A +G P++GD YG
Sbjct: 208 AITKYKVLKEG-EKFSLVELTPVTGRTHQLRCHMA-YIGYPLIGDSLYG 254
>gi|254229869|ref|ZP_04923274.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
gi|151937638|gb|EDN56491.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
Length = 345
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 145 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 201
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y ALV+G + S V++APL K V++ I VN +
Sbjct: 202 KT--------------VKKFYLALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 241
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 242 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 291
>gi|422307972|ref|ZP_16395126.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1035(8)]
gi|408618783|gb|EKK91845.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
CP1035(8)]
Length = 315
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLYFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|349700727|ref|ZP_08902356.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter europaeus LMG 18494]
Length = 252
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 27/153 (17%)
Query: 29 PRLVHRLDRDSSGILVMG-RTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87
P L HRLD+D+SG LV+ R Q V + F+A + ++ YWA+V
Sbjct: 63 PWLAHRLDQDTSGCLVIALRKQALVAV------QACFAAGQA---------RKTYWAIVQ 107
Query: 88 GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG----YT 143
GTP ++GVI PL + V+ G+ R+ V Q A TR++V G T
Sbjct: 108 GTPGTAQGVIDTPLAR--VEQGRQWRMQPVKT----GGQPARTRWRVRGTGHDGAGQPIT 161
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
WL+L TGR HQ R HCA + G PI GD +YG
Sbjct: 162 WLELVLETGRTHQARAHCAAI-GCPIRGDTRYG 193
>gi|189184769|ref|YP_001938554.1| ribosomal large subunit pseudouridine synthase C [Orientia
tsutsugamushi str. Ikeda]
gi|189181540|dbj|BAG41320.1| ribosomal large subunit pseudouridine synthase C [Orientia
tsutsugamushi str. Ikeda]
Length = 312
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 27/177 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG I S+D+ A L + +LVHRLDR++SG+L++ + +A L F
Sbjct: 113 LPTQGGSKISLSLDD-AIKYLNKSFYYDFKLVHRLDRETSGLLIIAKNHKTAIKLSQAFL 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ +++ Y A++ G P G I + K DR+ N
Sbjct: 172 HHS--------------IEKEYTAILQGVPSQLSGEIITNITKT------GDRMLETQN- 210
Query: 121 QIMSAQHAVTRYQVIKPSCHG-YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ ++T+YQV S + + + P+TGR HQLRVH A++ G PI+GD KY
Sbjct: 211 ---GGKVSITKYQVKAVSMNSQLSLVSFIPVTGRTHQLRVHAAKI-GHPIIGDKKYN 263
>gi|221135371|ref|ZP_03561674.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase [Glaciecola sp. HTCC2999]
Length = 316
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHR+DRD+SGIL++ + +++ LH
Sbjct: 112 LAVHGGSGLSFGLIEGLRALRPDAKFME---LVHRIDRDTSGILLVAKRRSALRHLHEQL 168
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R+K +Q+ Y ALV G ++ + APL K V+ +G +RI VN
Sbjct: 169 RDKK--------------MQKRYHALVWGQWPENRFKVKAPLLKNVLKSG--ERIVNVNP 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
+ + + TRY+V++ T ++ SP+TGR HQ+RVHC G PI GD KY
Sbjct: 213 E----GKPSETRYRVLQAFAQT-TLVEASPITGRTHQIRVHCLHA-GFPIGGDPKY 262
>gi|258621208|ref|ZP_05716242.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
VM573]
gi|424807256|ref|ZP_18232664.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
SX-4]
gi|258586596|gb|EEW11311.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
VM573]
gi|342325198|gb|EGU20978.1| ribosomal large subunit pseudouridine synthase C [Vibrio mimicus
SX-4]
Length = 316
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDSECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>gi|110803816|ref|YP_699133.1| pseudouridine synthase [Clostridium perfringens SM101]
gi|110684317|gb|ABG87687.1| pseudouridine synthase, RluA family [Clostridium perfringens SM101]
Length = 306
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 28/159 (17%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L F++ + ++R Y+A+V G
Sbjct: 133 PGIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHS--------------IKREYYAIVEG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLK 146
+ G I APLG+ DR+ + + AVT Y+V+K SC + +K
Sbjct: 179 RFKKEGGTIDAPLGR-----HHRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVK 227
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
+ TGR HQ+RVH A +G P++GD YG + +K Q
Sbjct: 228 CTLETGRTHQIRVHMA-FIGHPLLGDTVYGLKKQKKLSQ 265
>gi|444379435|ref|ZP_21178615.1| Ribosomal large subunit pseudouridine synthase C [Enterovibrio sp.
AK16]
gi|443676439|gb|ELT83140.1| Ribosomal large subunit pseudouridine synthase C [Enterovibrio sp.
AK16]
Length = 318
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ + A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLHFGAIEAMRALRPDARFLE---LVHRIDRDTSGILLIAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+AL +G + S ++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALAMGNWKPSMKKVTAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH A+ +G P+ D +YG
Sbjct: 211 ---GKPSETRFKVME-QFEQATLVQASPITGRTHQIRVH-AQYVGHPLAWDDRYG 260
>gi|332880211|ref|ZP_08447892.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357045819|ref|ZP_09107451.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
gi|332681860|gb|EGJ54776.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355531342|gb|EHH00743.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
Length = 544
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLD D+SG+L++ + + L +F E R +++ Y AL+ G
Sbjct: 385 PLLVHRLDMDTSGVLLIAKDPETHRQLQQLF--------------ETRHIKKRYIALLDG 430
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVTRYQVIKPSCHGYTWL 145
T +G I PL D + Q++S + AVTR++V+ S HG T +
Sbjct: 431 TVTDDEGFIRLPLCPNPNDRPR----------QMVSTAYGKAAVTRFEVLSRS-HGQTRV 479
Query: 146 KLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHR 181
P TGR HQLRVH A E L TPIVGD YG + R
Sbjct: 480 AFYPFTGRTHQLRVHAAHPEGLDTPIVGDNLYGRRASR 517
>gi|421724187|ref|ZP_16163421.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca M5al]
gi|410374996|gb|EKP29643.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca M5al]
Length = 317
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + H T ++ SP+
Sbjct: 185 QSHTKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKVEERFTHA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>gi|386340699|ref|YP_006037065.1| RluA family pseudouridine synthase [Shewanella baltica OS117]
gi|334863100|gb|AEH13571.1| pseudouridine synthase, RluA family [Shewanella baltica OS117]
Length = 319
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 142 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 188 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 241 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 267
>gi|296536195|ref|ZP_06898317.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
gi|296263477|gb|EFH09980.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
Length = 343
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ +++ + T L + F R L+R Y AL G
Sbjct: 154 PGIVHRLDKDTSGVMVVAKSEVAHTALSAAF--------------ASRDLERAYLALAWG 199
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P + G + AP+G+ D R+ VV + +HA+TRY + L+
Sbjct: 200 VPAPASGEVDAPVGRHPTDR---KRMAVVARN----GKHALTRYATERAWGTSCALLRCR 252
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH A + G P+VGD Y
Sbjct: 253 LATGRTHQIRVHMAHI-GHPLVGDPVY 278
>gi|217973818|ref|YP_002358569.1| RluA family pseudouridine synthase [Shewanella baltica OS223]
gi|217498953|gb|ACK47146.1| pseudouridine synthase, RluA family [Shewanella baltica OS223]
Length = 319
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 142 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 188 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 241 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 267
>gi|91227385|ref|ZP_01261774.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio alginolyticus
12G01]
gi|91188649|gb|EAS74939.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio alginolyticus
12G01]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 68 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 124
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y ALV+G + S V++APL K V++ I VN +
Sbjct: 125 KT--------------VKKFYLALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 164
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 165 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 214
>gi|410694586|ref|YP_003625208.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Thiomonas sp. 3As]
gi|294341011|emb|CAZ89406.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Thiomonas sp. 3As]
Length = 329
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 3 VQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ I+ L A T + E LVHRLDRD+SG+L++ + +++ T LH+ RE
Sbjct: 108 VHGGSGVSFGVIEALRAARPTAKFLE---LVHRLDRDTSGLLLIAKKRSALTTLHAALRE 164
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
+ +KR Y ALV G +I APL K ++ NG+ R+ V
Sbjct: 165 R---------HADKR-----YLALVAGLWTRGAVMIEAPLHKYLLANGER-RVRV----D 205
Query: 122 IMSAQHAVTRY----QVIKPSC---HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
+ Q + T++ Q P G + ++ LTGR HQ+RVH A G PIVGD K
Sbjct: 206 VQQGQESRTQFRSQEQFALPGLGPWGGLSLMQARLLTGRTHQIRVHLAHC-GHPIVGDDK 264
Query: 175 YG 176
YG
Sbjct: 265 YG 266
>gi|402306779|ref|ZP_10825817.1| rRNA pseudouridylate synthase C [Haemophilus sputorum HK 2154]
gi|400374207|gb|EJP27128.1| rRNA pseudouridylate synthase C [Haemophilus sputorum HK 2154]
Length = 320
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 25/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHR+DRD+SGIL++ + +++ LH
Sbjct: 114 IAVHGGSGLNFGVIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLHEQL 170
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT +Q+ Y ALV G + I APL K + +G +RI V+
Sbjct: 171 REKT--------------VQKDYLALVRGQWQSHVKAIKAPLLKNELASG--ERIVKVSE 214
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+Q+ + T +K SP+TGR HQ+RVH + G PI D KYG
Sbjct: 215 ----AGKPSETRFQIEERYGQEATLVKASPVTGRTHQIRVHT-QYAGHPIACDDKYG 266
>gi|397657322|ref|YP_006498024.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca E718]
gi|402842908|ref|ZP_10891311.1| rRNA pseudouridylate synthase C [Klebsiella sp. OBRC7]
gi|423102489|ref|ZP_17090191.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5242]
gi|376387965|gb|EHT00666.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5242]
gi|394345788|gb|AFN31909.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca E718]
gi|402278294|gb|EJU27358.1| rRNA pseudouridylate synthase C [Klebsiella sp. OBRC7]
Length = 331
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKG--------------MQKDYLALVRGQW 198
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + H T ++ SP+
Sbjct: 199 QSHTKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKVEERYTHA-TLVRCSPV 251
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 252 TGRTHQIRVHT-QYAGHPIAFDDRYG 276
>gi|375260241|ref|YP_005019411.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca KCTC 1686]
gi|365909719|gb|AEX05172.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca KCTC 1686]
Length = 317
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + H T ++ SP+
Sbjct: 185 QSHTKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKVEERYTHA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>gi|320160390|ref|YP_004173614.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
gi|319994243|dbj|BAJ63014.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
Length = 310
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 26/153 (16%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 85
E P +VHRLD+D+SG++++ + + L FR R +Q+ Y AL
Sbjct: 130 EERPGVVHRLDKDTSGLILLAKNDRAHRWLQDQFR--------------LRKVQKTYLAL 175
Query: 86 VVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY--QVIKPSCHGYT 143
V G P G I AP+G+ D R+ VV ++ + AV+ Y + + PS +T
Sbjct: 176 VDGRPPTPTGRIEAPIGR---DPKNRQRMAVVPPEK---GREAVSEYFTREVFPS---HT 226
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L++ PLTGR HQ+RVH A +G P+ GD YG
Sbjct: 227 LLEVHPLTGRTHQIRVHLA-FIGCPVAGDLIYG 258
>gi|302391670|ref|YP_003827490.1| ribosomal large subunit pseudouridine synthase D [Acetohalobium
arabaticum DSM 5501]
gi|302203747|gb|ADL12425.1| ribosomal large subunit pseudouridine synthase D [Acetohalobium
arabaticum DSM 5501]
Length = 308
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 23/149 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG +V + + L F+E R ++ Y ALV G
Sbjct: 132 PGIVHRLDKDTSGAIVAAKNDQAHRNLVKQFKE--------------RRTEKIYLALVEG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +K I A +G+ D R+ V + ++ AVTR++V++ YTW+KL
Sbjct: 178 NIKHNKAKIDAAIGR---DPYNRKRMAVTKRN----SKQAVTRFEVLE-RFGNYTWVKLK 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
TGR HQ+RVH + + P+VGD YG+
Sbjct: 230 LETGRTHQIRVHMS-YIDNPVVGDRLYGY 257
>gi|227431875|ref|ZP_03913898.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352342|gb|EEJ42545.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 312
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + H E+ S QR Y+ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDKA----HHSLSEQLKSHKN----------QRVYYALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I AP+G+ +D K I + AVT ++V+K GYT LK++
Sbjct: 175 EFTEDSGTIEAPIGRHKIDRKKQAVIE--------GGREAVTHFRVLKRYV-GYTLLKVN 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + + G P+VGD YG
Sbjct: 226 LETGRTHQIRVHMSYI-GHPVVGDPVYG 252
>gi|442611421|ref|ZP_21026127.1| Ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747349|emb|CCQ12189.1| Ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 321
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ + E + S LVHRLDRD+SG +++ + ++ LH R
Sbjct: 114 LAVHGGSGLSFGLIEAIRALRPEERS--LELVHRLDRDTSGCIIIAKKRSILKGLHEQLR 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G ++ PL K + +G +R+ V+
Sbjct: 172 EKT--------------MEKNYWALVKGDWSAKNKNVTEPLKKNTLQSG--ERVVRVD-- 213
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ G T ++ SP+TGR HQ+RVH + G PI D KYG
Sbjct: 214 -VEEGKPSHTRFRILE-KFDGATLVQASPVTGRTHQIRVH-TQCKGNPIACDDKYG 266
>gi|422013857|ref|ZP_16360475.1| 23S rRNA pseudouridylate synthase C [Providencia burhodogranariea
DSM 19968]
gi|414102369|gb|EKT63962.1| 23S rRNA pseudouridylate synthase C [Providencia burhodogranariea
DSM 19968]
Length = 319
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SGIL++ + +++ LH R K +Q+ Y ALV G
Sbjct: 138 LVHRLDRDTSGILLVAKKRSALRALHEQLRLKQ--------------MQKDYMALVRGNW 183
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN++ + + TR++V + T +K SP+
Sbjct: 184 QSHTKVVQAPLLKNILQSG--ERIVRVNSE----GKPSETRFKV-EERFDNATLVKASPV 236
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH G PI D +YG
Sbjct: 237 TGRTHQIRVHTLHA-GHPIAFDNRYG 261
>gi|333994405|ref|YP_004527018.1| ribosomal large subunit pseudouridine synthase C [Treponema
azotonutricium ZAS-9]
gi|333735205|gb|AEF81154.1| ribosomal large subunit pseudouridine synthase C [Treponema
azotonutricium ZAS-9]
Length = 221
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 40/180 (22%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI+ S+D L A +Y P LVHRLDRD+SG++++ + + +A S F
Sbjct: 22 LAVQGGEGIKTSLDSLLAE----NYDPRPLLVHRLDRDTSGVILVAKNKEAAARFSSYFA 77
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E++ + +++ Y + TP+ S GVI PL GK+
Sbjct: 78 ERSQGSQ----------IRKLYLGICSKTPQPSSGVIRLPLEI----KGKT--------- 114
Query: 121 QIMSAQHAVTRYQVIKPS----CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TRY+++ + C + L+L +GR HQ+R H A++ PI+GD KYG
Sbjct: 115 -----KESETRYRLVSENPGIPC---SLLELELGSGRMHQIRRHLAQI-NCPILGDDKYG 165
>gi|307544580|ref|YP_003897059.1| 23S rRNA pseudouridylate synthase C [Halomonas elongata DSM 2581]
gi|307216604|emb|CBV41874.1| 23S rRNA pseudouridylate synthase C [Halomonas elongata DSM 2581]
Length = 315
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G++ I+ L D+ E LVHRLDRD+SG L++ +++T+ L++
Sbjct: 109 LAVHGGSGVKIGLIEALRQVREDLDFLE---LVHRLDRDTSGCLLLAKSRTALLTLNTAL 165
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ + + Y ALV G + +SA L + NG+ R+ V N
Sbjct: 166 KRHEMT--------------KRYLALVAGRWPARRDFVSARLDRFDAGNGER-RVRVDAN 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ A TR+ V + + G T ++ P+TGR HQ+RVH A G P++GD KYG
Sbjct: 211 GKV-----ARTRFAV-RETFAGATLMEAEPVTGRTHQIRVHAAHA-GHPLLGDDKYG 260
>gi|373949093|ref|ZP_09609054.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
gi|386325069|ref|YP_006021186.1| RluA family pseudouridine synthase [Shewanella baltica BA175]
gi|333819214|gb|AEG11880.1| pseudouridine synthase, RluA family [Shewanella baltica BA175]
gi|373885693|gb|EHQ14585.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
Length = 319
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 142 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 188 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 241 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 267
>gi|300869701|ref|YP_003784572.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli 95/1000]
gi|300687400|gb|ADK30071.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli 95/1000]
Length = 222
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 23/142 (16%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+ +SGIL++ + + T + F+ R + + Y A+V G P
Sbjct: 51 LVHRLDKYTSGILILAKDNNTKTYFENAFKN--------------REINKVYHAIVEGVP 96
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ KG I + K + K RI V +I A+T Y+V+K ++ L+L P+
Sbjct: 97 KNIKGTIDIQIAKDTKNPNK--RIAVKKGGEI-----AITHYKVLK-KFKLHSLLELKPI 148
Query: 151 TGRKHQLRVHCAEVLGTPIVGD 172
TGR HQ+RVH + LG PI+GD
Sbjct: 149 TGRTHQIRVHLS-YLGNPIIGD 169
>gi|262393762|ref|YP_003285616.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
gi|451976046|ref|ZP_21927218.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus E0666]
gi|262337356|gb|ACY51151.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
gi|451930014|gb|EMD77736.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus E0666]
Length = 314
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYLALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>gi|217976505|ref|YP_002360652.1| pseudouridine synthase [Methylocella silvestris BL2]
gi|217501881|gb|ACK49290.1| pseudouridine synthase [Methylocella silvestris BL2]
Length = 234
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 23/162 (14%)
Query: 15 ELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE 74
E A L + P L HRLDRD+SG LV+GR + L +F++ +
Sbjct: 46 EAAFHWLRFGLPRSPALAHRLDRDTSGCLVLGRHHKALEKLGLLFKQGKIGKT------- 98
Query: 75 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 134
Y ++V G P +G+I PLG+ G ++ + Q + TR+++
Sbjct: 99 -------YVSIVNGRPGAEEGLIDLPLGRRDETRGWWMKVDP-------AGQSSQTRWRI 144
Query: 135 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ +T L L+PLTGR HQLRVHCA +G I+GD YG
Sbjct: 145 LAKGP-AHTLLALTPLTGRTHQLRVHCA-AMGFSILGDPIYG 184
>gi|375337549|ref|ZP_09778893.1| 23S rRNA pseudouridylate synthase C [Succinivibrionaceae bacterium
WG-1]
Length = 288
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 31/196 (15%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
MPV GG G+ I+ + A + E L HRLD+D+SG L++ + +++ LH F
Sbjct: 114 MPVHGGSGVDYGVIEAMRAVRPELRFLE---LAHRLDKDTSGCLIIAKKRSTLRALHEQF 170
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVV 117
REK + + Y ALV+G +PR V++APL K + +G +R V
Sbjct: 171 REKD--------------MHKQYLALVIGKFSPRLK--VVNAPLLKNTLSSG--ERFVKV 212
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 177
+ + + ++T + I+ + + T ++ P TGR HQ+RVH A G I+GD KYG
Sbjct: 213 D---LGLGKPSITDFN-IRENFNNVTLVEACPRTGRTHQIRVHLA-YKGHAILGDTKYGS 267
Query: 178 QTHRKWKQFHPSDLSK 193
+ K + P LS+
Sbjct: 268 REIDKL--YEPLGLSR 281
>gi|404476000|ref|YP_006707431.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli B2904]
gi|431807229|ref|YP_007234127.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli P43/6/78]
gi|404437489|gb|AFR70683.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli B2904]
gi|430780588|gb|AGA65872.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli P43/6/78]
Length = 222
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 23/142 (16%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+ +SGIL++ + + T + F+ R + + Y A+V G P
Sbjct: 51 LVHRLDKYTSGILILAKDNNTKTYFENAFKN--------------REINKVYHAIVEGVP 96
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ KG I + K + K RI V +I A+T Y+V+K ++ L+L P+
Sbjct: 97 KNIKGTIDIQIAKDTKNPNK--RIAVKKGGEI-----AITHYKVLK-KFKLHSLLELKPI 148
Query: 151 TGRKHQLRVHCAEVLGTPIVGD 172
TGR HQ+RVH + LG PI+GD
Sbjct: 149 TGRTHQIRVHLS-YLGNPIIGD 169
>gi|423128587|ref|ZP_17116266.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5250]
gi|376393069|gb|EHT05730.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5250]
Length = 331
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKG--------------MQKDYLALVRGQW 198
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + H T ++ SP+
Sbjct: 199 QSHTKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKVEERFTHA-TLVRCSPV 251
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 252 TGRTHQIRVHT-QYAGHPIAFDDRYG 276
>gi|407768788|ref|ZP_11116166.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407288472|gb|EKF13950.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 269
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 26/160 (16%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P L HRLDRD++G L++ R S+ + +F EK ++ +
Sbjct: 48 LKFGIQPEPTLAHRLDRDTAGCLLLCRHPKSSKKITRLFTEK--------------LIGK 93
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI----K 136
YWA+V G G I AP+GK N +S +V+ D Q + T Y+V+
Sbjct: 94 TYWAVVRGAVADDHGFIDAPIGKT---NDESGWRMLVHED----GQPSKTEYRVLGRGKD 146
Query: 137 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ TWL L+P TGR HQLRVH + G P++GD YG
Sbjct: 147 EAGDDITWLALTPHTGRTHQLRVHLDHI-GHPVLGDPFYG 185
>gi|160874866|ref|YP_001554182.1| RluA family pseudouridine synthase [Shewanella baltica OS195]
gi|160860388|gb|ABX48922.1| pseudouridine synthase, RluA family [Shewanella baltica OS195]
Length = 329
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 152 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 197
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 198 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 250
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVHC + G PI D KY Q
Sbjct: 251 TGRTHQIRVHC-QFAGHPIACDDKYSEQA 278
>gi|189346997|ref|YP_001943526.1| RluA family pseudouridine synthase [Chlorobium limicola DSM 245]
gi|189341144|gb|ACD90547.1| pseudouridine synthase, RluA family [Chlorobium limicola DSM 245]
Length = 354
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 56/247 (22%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++++ + + T LH + R+ R +Q+ Y A+V G
Sbjct: 156 PGIVHRLDKDTSGLIIIAK---NPTALHRLARQFAM-----------RQVQKIYKAIVWG 201
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I +G+ + K+ +I + + +HA+T Y +++ + H ++ + L+
Sbjct: 202 VPDPRSGTILTNIGR----SKKNRKIMANYPYEGLDGKHAITDY-LVEENLHWFSVVSLT 256
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+R H G PI+GD YG R +P K+ F
Sbjct: 257 LHTGRTHQIRAHMQHT-GNPILGDETYGGTVIRT----------------LPFSKSESFV 299
Query: 209 LDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQR 268
+L LE PR LH + ++ + E L +PLP+ MQR
Sbjct: 300 TNL-----LEIMPRQALHAETLSF---------------SQPTTHEKLTFSSPLPTDMQR 339
Query: 269 SWDVLNS 275
+ + + S
Sbjct: 340 TLEKIRS 346
>gi|336311182|ref|ZP_08566149.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
gi|335865398|gb|EGM70424.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
Length = 320
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ +H R K +Q+ Y ALV G
Sbjct: 143 LVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKK--------------MQKDYLALVKGEW 188
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
V+ PL K+ + +G +RI VN + + + TR+++++ G T ++ SP+
Sbjct: 189 SAQDKVVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIVQ-RYQGCTLVQASPV 241
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 242 TGRTHQIRVHC-QYAGHPIACDEKYSEQ 268
>gi|333368213|ref|ZP_08460423.1| ribosomal large subunit pseudouridine synthase C [Psychrobacter sp.
1501(2011)]
gi|332977603|gb|EGK14371.1| ribosomal large subunit pseudouridine synthase C [Psychrobacter sp.
1501(2011)]
Length = 364
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E + Y E LVHR+D+D+SG+L++ + +++ VL R
Sbjct: 163 MAVHGGSGLDFGVIEAMRDATSKKYLE---LVHRIDKDTSGLLMIAKKRSTLKVLQEYLR 219
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +Q+ Y +V G P + I APL + + +G+ N+
Sbjct: 220 EKT--------------IQKHYLCIVKGQPALNDISIDAPLLRYTLASGERRVRVDKNSP 265
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
++Q + + + ++ P TGR HQ+RVH A LG PI+GD KY Q
Sbjct: 266 DAKTSQTTCKVLARFEINGEPVSLIEAMPHTGRTHQIRVHLA-YLGHPILGDDKYHIQ 322
>gi|12045061|ref|NP_072871.1| RluA family pseudouridine synthase [Mycoplasma genitalium G37]
gi|255660210|ref|ZP_05405619.1| RluA family pseudouridine synthase [Mycoplasma genitalium G37]
gi|402551026|ref|YP_006599746.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2321]
gi|402551515|ref|YP_006600234.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6282]
gi|402552017|ref|YP_006600735.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6320]
gi|402552519|ref|YP_006601236.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2288]
gi|1351510|sp|P47451.1|Y209_MYCGE RecName: Full=Uncharacterized RNA pseudouridine synthase MG209;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|3844807|gb|AAC71427.1| pseudouridine synthase, RluA family [Mycoplasma genitalium G37]
gi|166079007|gb|ABY79625.1| pseudouridine synthase, RluA family [synthetic Mycoplasma
genitalium JCVI-1.0]
gi|401799721|gb|AFQ03038.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2321]
gi|401800210|gb|AFQ03526.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6282]
gi|401800712|gb|AFQ04027.1| RluA family pseudouridine synthase [Mycoplasma genitalium M6320]
gi|401801214|gb|AFQ04528.1| RluA family pseudouridine synthase [Mycoplasma genitalium M2288]
Length = 308
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
L A C+ ++ P LVHRLDRD+SG +V+ + Q S L + + +T
Sbjct: 111 LLAACIFHNNKNPVYLVHRLDRDTSGAIVVCKNQASLLNLQNQLQNRT------------ 158
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
L+R+Y ALV G I+APL + V+N K + Q A+ A+T+++VI
Sbjct: 159 --LKRYYVALVHFPFNALTGSINAPLAR--VNNNK----VMFKIAQTAKAKQAITKFKVI 210
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK--WKQF 186
+ + L LTGR HQ+RVH + + P+ D YG ++ +K + QF
Sbjct: 211 NQN-EKAALISLELLTGRTHQIRVHL-KFIQHPVYNDPLYGIKSEKKDSYGQF 261
>gi|386287786|ref|ZP_10064957.1| RluA family pseudouridine synthase [gamma proteobacterium BDW918]
gi|385279296|gb|EIF43237.1| RluA family pseudouridine synthase [gamma proteobacterium BDW918]
Length = 317
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG GI S+ + A Y LVHRLDRD+SG +++ + ++ LH + +
Sbjct: 112 LAVHGGSGI--SLGLIEALRQMYPEQRHLELVHRLDRDTSGCVMVAKKRSVLKQLHELLK 169
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
++ + + Y ALV G K ++APL K V+ +G +R+ V
Sbjct: 170 -------------ARKGVDKRYLALVGGKWPARKQQVNAPLQKNVLSSG--ERMVRVE-- 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + +VT Y +++ G + ++ P+TGR HQ+RVHC + G PI+GD KYG
Sbjct: 213 --LEGKKSVTEYTLLR-RVAGASLIEARPVTGRTHQIRVHC-QYAGYPILGDDKYG 264
>gi|430375677|ref|ZP_19430080.1| RluA family pseudouridine synthase [Moraxella macacae 0408225]
gi|429540908|gb|ELA08936.1| RluA family pseudouridine synthase [Moraxella macacae 0408225]
Length = 385
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 26/185 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G + E Y E LVHR+D+D+SG+L++ + +T+ L R
Sbjct: 181 MAVHGGSGESFGVIEAMRVATGKKYLE---LVHRIDKDTSGLLMIAKKRTTLKTLQDHLR 237
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN- 119
+KT LQ+ Y LV G + K I PL K ++NG+ R+ V N
Sbjct: 238 QKT--------------LQKTYLCLVNGWIKTDKQKIDKPLLKYRLENGER-RVKVAQNH 282
Query: 120 ---DQIMSAQHAVTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 173
+ + + R ++ PS G +++++ PLTGR HQ+RVH A +G ++GD
Sbjct: 283 PDSKPSQTLVNVLKRLELSLPSSAGNKKVSFVEVKPLTGRTHQIRVHMA-FIGHALLGDD 341
Query: 174 KYGWQ 178
KY Q
Sbjct: 342 KYHVQ 346
>gi|372221138|ref|ZP_09499559.1| ribosomal large subunit pseudouridine synthase A [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 551
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 28/165 (16%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y + P VHRLD+D+SGIL++ T+ + +L F ++T + + Y
Sbjct: 384 YPNATGPITVHRLDQDTSGILLVALTKEAHKLLQRQFLDRT--------------IHKTY 429
Query: 83 WALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH 140
A++ ++G I PL ++D N ++ + +HA+T Y+V+K +
Sbjct: 430 VAILDRAIAVTQGKIELPL---ILDIYNRPMQKVDA------LYGKHALTHYEVLK-TTK 479
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 183
T +KL+P+TGR HQLRVHCA LG PI GD YG R +
Sbjct: 480 TQTLIKLNPVTGRSHQLRVHCAHKLGLHAPIAGDNLYGTPLDRLY 524
>gi|315123230|ref|YP_004065236.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas sp.
SM9913]
gi|315016990|gb|ADT70327.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas sp.
SM9913]
Length = 563
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 24/155 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD +SG+L++ + + L F E+T EKR Y ALV G
Sbjct: 404 PLIVHRLDMSTSGLLIIALNKRAHKALQKQFIERTI---------EKR-----YVALVAG 449
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI+ PL V+D R V + + ++T + V++ + T L+L
Sbjct: 450 NITENSGVINLPL---VLDFDDKPRQMVC----YKTGKPSLTTWHVLERK-NNTTRLQLY 501
Query: 149 PLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 181
P TGR HQLRVHCA LG TPIVGD YG + R
Sbjct: 502 PKTGRTHQLRVHCAHQLGLNTPIVGDTHYGEEAER 536
>gi|406907642|gb|EKD48415.1| hypothetical protein ACD_64C00330G0003 [uncultured bacterium]
Length = 320
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 19/155 (12%)
Query: 25 YSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWA 84
Y + P +VHRLD+D+SG+L++ RT + + +FR+ R + + Y+A
Sbjct: 141 YVDRPGIVHRLDKDTSGLLIVPRTNYAHGIFADLFRD--------------RKMSKTYYA 186
Query: 85 LVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTW 144
+V G P +GVI+ P+G+ + K+ + ++ M + A T Y+V++
Sbjct: 187 IVQGHPE-KQGVITLPIGRDPI--LKTKMTSKQFPERSMKVRDATTHYKVLE-YFDDAAL 242
Query: 145 LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+++ P+TGR HQ+RVH + G P++GD YG ++
Sbjct: 243 IEVKPVTGRTHQIRVHFVAI-GHPLIGDAVYGKKS 276
>gi|126173940|ref|YP_001050089.1| RluA family pseudouridine synthase [Shewanella baltica OS155]
gi|125997145|gb|ABN61220.1| ribosomal large subunit pseudouridine synthase C [Shewanella
baltica OS155]
Length = 329
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 152 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 197
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 198 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 250
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 251 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 277
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 26/167 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++++ +T + L +E+T R Y A+V G
Sbjct: 136 PGIVHRLDKDTSGVMMVAKTDRAHLDLARQIKERTAG--------------RKYVAIVHG 181
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ ++G+I+AP+G+ D K + VV +++ A+T +QV++ YT ++
Sbjct: 182 NIKENQGIINAPIGRHPTDRKK---MAVV----FTNSKEAITTFQVLE-RFGDYTLVECR 233
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 192
TGR HQ+RVH A + G P+VGD KYG R + H ++L+
Sbjct: 234 LFTGRTHQIRVHMAYI-GHPVVGDPKYGPGRQRFAIMGQALHAAELT 279
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040287|gb|ACT57083.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 21/153 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G++V+ + + L F + S L+R Y+A+V G
Sbjct: 142 PGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR----------LKRAYYAMVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRI-TVVNNDQIMSAQHAVTRYQVI----KPSCHGYT 143
P G+I+APLG+ KS+R+ V +A A+T YQ I K S +
Sbjct: 192 IPLPDSGIINAPLGRC-----KSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVS 246
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LK TGR HQ+RVH A G P++GD YG
Sbjct: 247 LLKCHLETGRTHQIRVHMAHK-GNPLIGDPLYG 278
>gi|153000233|ref|YP_001365914.1| RluA family pseudouridine synthase [Shewanella baltica OS185]
gi|151364851|gb|ABS07851.1| pseudouridine synthase, RluA family [Shewanella baltica OS185]
Length = 329
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 152 LVHRLDKDTSGVLLVAKKRSALKHLHDQLRYKK--------------MQKDYLALVKGEW 197
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ PL K+ + +G +RI VN + + + TR+++++ G T +K SP+
Sbjct: 198 SAQDKAVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ-RYQGCTLVKASPV 250
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVHC + G PI D KY Q
Sbjct: 251 TGRTHQIRVHC-QFAGHPIACDDKYSEQ 277
>gi|357406442|ref|YP_004918366.1| rRNA pseudouridylate synthase C [Methylomicrobium alcaliphilum 20Z]
gi|351719107|emb|CCE24781.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Methylomicrobium alcaliphilum 20Z]
Length = 318
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 90/158 (56%), Gaps = 27/158 (17%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG L++ + +++ LH +FR D+ +Q+ Y A++ G
Sbjct: 142 LVHRLDRDTSGCLLIAKKRSALRKLHELFR----------GDD----IQKTYLAVLAGRW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLKLS 148
K V++APL K V N +R+ V+ S + A T ++ IK P+ T ++ S
Sbjct: 188 ARKKLVVTAPLQKNV--NKGGERMVEVSR----SGKEAETFFRRIKLLPNA---TLVEAS 238
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQ 185
P TGR HQ+RVH A LG PI+GD +YG ++ ++ +K+
Sbjct: 239 PKTGRTHQIRVHAA-WLGHPIIGDERYGDFEVNKAFKK 275
>gi|414562070|ref|YP_007001370.1| 23S rRNA pseudouridine955/2504/2580 synthase RluC [Shewanella
oneidensis MR-1]
gi|410519821|gb|AFV73559.1| 23S rRNA pseudouridine955/2504/2580 synthase RluC [Shewanella
oneidensis MR-1]
Length = 319
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+D+SG+L++ + +++ +H R K +Q+ Y ALV G
Sbjct: 142 LVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKK--------------MQKDYLALVKGEW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
V+ PL K+ + +G +RI VN + + + TR+++++ G T ++ SP+
Sbjct: 188 SAQDKVVKQPLLKLTLKSG--ERIVRVNAE----GKPSETRFKIVQ-RYQGCTLVQASPV 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVHC + +G PI D KY Q
Sbjct: 241 TGRTHQIRVHC-QYVGHPIACDDKYSEQA 268
>gi|407975175|ref|ZP_11156081.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
gi|407429260|gb|EKF41938.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
Length = 349
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 77/162 (47%), Gaps = 37/162 (22%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDRD+SG++V+ +T + L F + S L+R Y ALV G
Sbjct: 149 PGIVHRLDRDTSGVMVVAKTDRAHRALSEAFADHGRSGD----------LERAYEALVWG 198
Query: 89 TPRCSKGVISAPLG--------KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK---P 137
P G I A LG + VV G+SD A+HAVT YQV K
Sbjct: 199 APDRMAGSIDAALGRHAQSRTLRAVVPAGRSD------------ARHAVTHYQVKKRYGS 246
Query: 138 SCHGYTWLKLSPL---TGRKHQLRVHCAEVLGTPIVGDYKYG 176
G + L TGR HQ+RVH A + G P+VGD +YG
Sbjct: 247 DGRGGAFAALLECRLETGRTHQIRVHLAHI-GHPLVGDQEYG 287
>gi|296446414|ref|ZP_06888358.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
gi|296256049|gb|EFH03132.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
Length = 229
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 107/259 (41%), Gaps = 78/259 (30%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + PP L HRLDRD+SG LV+GR + + L +FR+ ++
Sbjct: 39 ALRFGLPRPPALAHRLDRDTSGCLVLGRHRKALERLGKLFRDGR--------------IE 84
Query: 80 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQI-MSAQ---HAVTRYQVI 135
+ YWA+V G P G I LG++ S R + D + + AQ A+ R Q
Sbjct: 85 KTYWAVVEGAPADDAGEIDMALGRL-----DSTRGWWMRPDPLGLPAQTHWRALARGQDT 139
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 195
+ +L+L P TGR HQLRVH + +G PI+GD YG H K
Sbjct: 140 E--GRDIAFLELKPRTGRTHQLRVHM-QAMGWPILGDPVYG---HGK------------- 180
Query: 196 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 255
E P LHLH + + +P + G E+
Sbjct: 181 ---------------------REGAPPLHLHARAIVVP----------IRDGH-----ES 204
Query: 256 LKLVAPLPSHMQRSWDVLN 274
+ + AP+P HM+ + D L
Sbjct: 205 VAVTAPVPPHMRGTLDTLG 223
>gi|288940468|ref|YP_003442708.1| RluA family pseudouridine synthase [Allochromatium vinosum DSM 180]
gi|288895840|gb|ADC61676.1| pseudouridine synthase, RluA family [Allochromatium vinosum DSM
180]
Length = 346
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 17/149 (11%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG LV+ + +++ LH++ RE L + Y AL++G
Sbjct: 165 LVHRLDRDTSGCLVVCKRRSALRELHALIREGG--------------LDKRYLALILGEL 210
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
++ ++ APL K V+ +G +R+ V+ A+ R + T ++ +
Sbjct: 211 PRAELLVDAPLKKNVLSSG--ERLVRVDAQGGKEARTRFRRLKRFAIDGQALTLVEAELI 268
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVH A LGTP+ GD KYG +
Sbjct: 269 TGRTHQIRVHAAH-LGTPLAGDDKYGDEA 296
>gi|153953824|ref|YP_001394589.1| pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219854440|ref|YP_002471562.1| hypothetical protein CKR_1097 [Clostridium kluyveri NBRC 12016]
gi|146346705|gb|EDK33241.1| Predicted pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219568164|dbj|BAH06148.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 305
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L ++ + + R Y ALV G
Sbjct: 132 PGIVHRIDKDTSGILVIAKNDMSHNKLSEQLKDHSMT--------------REYIALVEG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ KG + P+G+ K D+I + + + AVT Y+VIK YT +K
Sbjct: 178 IIKEEKGSLDKPIGR-----HKKDKIKMA---VVEGGKRAVTHYEVIK-RFKEYTLVKCI 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH LG P+VGD YG++ +
Sbjct: 229 LETGRTHQIRVHMC-YLGHPVVGDPVYGYKKQK 260
>gi|394988553|ref|ZP_10381388.1| hypothetical protein SCD_00954 [Sulfuricella denitrificans skB26]
gi|393791932|dbj|GAB71027.1| hypothetical protein SCD_00954 [Sulfuricella denitrificans skB26]
Length = 317
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG GI R I+++ + + E LVHRLDR++SG+L++ + +++ LH
Sbjct: 111 MAVHGGSGISRGVIEQMRLEHPEFKFLE---LVHRLDRETSGVLLLAKKRSALVELHRAM 167
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
RE + EKR Y LV G +K + PL K V +G+ R++V N
Sbjct: 168 RE---------GETEKR-----YLTLVKGQWLNAKQSVKLPLHKYVTGSGER-RVSV--N 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
++ +A T +K S + L+ TGR HQ+RVH + LG PIVGD KYG
Sbjct: 211 EEGQTAHTIFT----LKKSWPEFCLLEAELKTGRTHQIRVHLSH-LGFPIVGDDKYG 262
>gi|284007272|emb|CBA72588.1| 23S rRNA pseudouridylate synthase C [Arsenophonus nasoniae]
Length = 315
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ I E A + + LVHRLDR++SG+L++ + +++ VLH R
Sbjct: 110 MAVHGGSGVNFGIIE--ALRILRPEARFLELVHRLDRETSGVLLIAKKRSALRVLHQQLR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K +Q+ Y ALV G VI APL K ++ +G +RI V D
Sbjct: 168 LKQ--------------MQKQYLALVKGQWPSHIKVIQAPLLKNILQSG--ERIVKVGTD 211
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+++ T ++ I+ T +K SP+TGR HQ+RVH A+ PI D +YG
Sbjct: 212 ----GKYSETHFK-IEERFSNATLVKASPITGRTHQIRVH-AQYAKHPIACDNRYG 261
>gi|212557318|gb|ACJ29772.1| Pseudouridine synthase, RluD [Shewanella piezotolerans WP3]
Length = 308
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 24/178 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ + E + T + LVHRLD+D+SG+L++ + +++ LH R
Sbjct: 103 IAVHGGSGVDFGVIEAMRSLRTQ--QKFLELVHRLDKDTSGLLLIAKKRSALKHLHDQLR 160
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
K +Q+ Y ALV G + + APL K+ + +G +RI VN +
Sbjct: 161 YKK--------------MQKDYLALVRGEWQKHDKAVKAPLLKLTLKSG--ERIVRVNKE 204
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + TR+++++ T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 205 ----GKESETRFKIMQRYSDA-TLVQASPITGRTHQIRVHC-QYAGHPIACDEKYSEQ 256
>gi|441495853|ref|ZP_20978091.1| Ribosomal large subunit pseudouridine synthase D [Fulvivirga
imtechensis AK7]
gi|441440388|gb|ELR73653.1| Ribosomal large subunit pseudouridine synthase D [Fulvivirga
imtechensis AK7]
Length = 341
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 21/158 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHR+D+D+SG+LV+ +++ L F + + ++R Y+ALV G
Sbjct: 146 PGLVHRIDKDTSGLLVIAKSEAGMNGLAKQFYDHS--------------IERTYYALVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P KG I+ LG+ + D R+TV D+ + ++A+T Y+V++ + +K +
Sbjct: 192 VPEPEKGTININLGRSLKDR----RVTVAYEDESI-GRNAITHYEVVE-DLRYVSLVKCN 245
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
TGR HQ+R H LG P+ D YG K QF
Sbjct: 246 LETGRTHQIRAHMKH-LGHPLFNDATYGGDKVLKGTQF 282
>gi|302035759|ref|YP_003796081.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
gi|300603823|emb|CBK40155.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
Length = 320
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 22/166 (13%)
Query: 13 IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDND 72
++ L C + P +VHRLD+D+SG++V+ +T+ + L F
Sbjct: 111 LNALLDHCARGGGAATPGVVHRLDKDTSGVMVVAKTEEAHRKLSEQF------------- 157
Query: 73 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 132
E+ + R Y ALVVG P S+G I A LG D R + Q + + AVT Y
Sbjct: 158 -ERHSITRQYEALVVGVPAQSEGRIEAALGP---DRHHPKRTST----QTLQPKPAVTDY 209
Query: 133 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+V + L LSP TGR HQ+R H V+G PI+GD YG +
Sbjct: 210 RVEEVFDKVAARLVLSPHTGRTHQIRAHL-HVIGHPILGDRSYGGE 254
>gi|335429378|ref|ZP_08556276.1| hypothetical protein HLPCO_10383 [Haloplasma contractile SSD-17B]
gi|334889388|gb|EGM27673.1| hypothetical protein HLPCO_10383 [Haloplasma contractile SSD-17B]
Length = 299
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++G+LVM + + L F++KT + R Y ALV G
Sbjct: 128 PGVVHRIDKDTTGLLVMAKNDHAHNFLAKQFKDKTTT--------------REYCALVYG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T +KG I AP+G+ D ++ VV + AVT ++V++ YT +K
Sbjct: 174 TIAHNKGTIDAPIGR---DPKDRKKMAVV-----AGGRSAVTHFEVVE-RLGDYTLIKCV 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + P+VGD KYG
Sbjct: 225 LETGRTHQIRVHL-RYIDHPLVGDPKYG 251
>gi|169831112|ref|YP_001717094.1| RluA family pseudouridine synthase [Candidatus Desulforudis
audaxviator MP104C]
gi|169637956|gb|ACA59462.1| pseudouridine synthase, RluA family [Candidatus Desulforudis
audaxviator MP104C]
Length = 309
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDRD+SG+L++ + + L ++ R + R Y ALV G
Sbjct: 132 PGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKD--------------RAVLRRYTALVHG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
PR G + AP+G+ D R+ V S + A T Y+V++ ++ L+L+
Sbjct: 178 RPRRETGTVDAPIGRHPRDR---QRMAVTPR----SGRAARTHYRVVR-RFDKFSLLELT 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A V G P+VGD KYG
Sbjct: 230 LDTGRTHQIRVHMAHV-GHPLVGDLKYG 256
>gi|357975814|ref|ZP_09139785.1| pseudouridylate synthase [Sphingomonas sp. KC8]
Length = 223
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 41/176 (23%)
Query: 20 CLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79
L + + P +VHRLDRD+SG L++ R + +K ++A+ E +Q
Sbjct: 40 SLRFGFQRRPAIVHRLDRDTSGCLLLARNPKA---------QKRYNAAFETGQ-----VQ 85
Query: 80 RWYWALVVGTPRCSKGVISAPLGKV---------VVD-NGKSDRITVVNNDQIMSAQHAV 129
+ YWA+V P G I PL KV +VD GK+ R
Sbjct: 86 KTYWAVVSPVPADDSGTIDMPLLKVSTREAGWRMIVDPRGKASR---------------- 129
Query: 130 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 185
T ++ + G ++ SP TGR HQ+RVH A LG PIVGD YG + K Q
Sbjct: 130 THWRKLA-EADGRALIEFSPETGRTHQIRVHAATGLGAPIVGDPIYGTGSQEKGGQ 184
>gi|423107796|ref|ZP_17095491.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5243]
gi|376386529|gb|EHS99240.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5243]
Length = 345
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 167 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKG--------------MQKDYLALVRGQW 212
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + H T ++ SP+
Sbjct: 213 QSHTKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKVEERYPHA-TLVRCSPV 265
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 266 TGRTHQIRVHT-QYAGHPIAFDDRYG 290
>gi|322418067|ref|YP_004197290.1| RluA family pseudouridine synthase [Geobacter sp. M18]
gi|320124454|gb|ADW12014.1| pseudouridine synthase, RluA family [Geobacter sp. M18]
Length = 300
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 28/164 (17%)
Query: 15 ELAATCL--TYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDND 72
E A C + +P R+VHRLDR +SG++ + + +AT++ ++ +E
Sbjct: 111 EYAVECYMKSIGLRDPSRVVHRLDRGTSGVMFFPKHKQAATLISNLLKEGK--------- 161
Query: 73 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 132
+Q+ YWALV G+P + APL DR+ + + A T +
Sbjct: 162 -----VQKTYWALVSGSPDQQGWKVDAPL----------DRVGKFRYGVSLRGKPARTVF 206
Query: 133 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
V+ G T ++ PLTGR HQ+RVH A G PI+GD YG
Sbjct: 207 SVLGEG-KGVTVIEAKPLTGRTHQIRVHLAHS-GFPIIGDESYG 248
>gi|94499595|ref|ZP_01306132.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [Bermanella marisrubri]
gi|94428349|gb|EAT13322.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [Oceanobacter sp. RED65]
Length = 318
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 25/177 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG GI + E+ ++ LVHRLDRD+SG++++ + +T+ H + +
Sbjct: 111 MAVHGGSGISLGLIEVLRNLRPK--AKRLELVHRLDRDTSGVILVAKRRTALVAFHKMLQ 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGT-PRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
K+ +Q+ Y ALV G P+ K V PL K + +G +R+ V
Sbjct: 169 -------------RKQGMQKRYLALVYGNWPKHLKDV-EVPLKKNELKSG--ERLVKVAQ 212
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + TRY I+ GYT + P+TGR HQ+RVHC + G IVGD KY
Sbjct: 213 D----GKPSHTRYS-IERKFKGYTLVNAEPVTGRTHQIRVHC-QFSGHNIVGDEKYA 263
>gi|397689928|ref|YP_006527182.1| pseudouridine synthase [Melioribacter roseus P3M]
gi|395811420|gb|AFN74169.1| pseudouridine synthase [Melioribacter roseus P3M]
Length = 218
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 35/163 (21%)
Query: 19 TCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRIL 78
L+ YS+ +VHRLD++ SG+++ + L +F E R +
Sbjct: 36 NLLSEKYSKKIYIVHRLDKEVSGVMLFAFNGETHRELSLLF--------------ESRNV 81
Query: 79 QRWYWALVVGTPRCSKGVISAPL-----GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
+ Y ALV+G P +G+I+ PL G++ VD K + + T Y+
Sbjct: 82 HKTYKALVIGKPEYEEGIINNPLRQFGSGRMGVDEKK--------------GKPSETYYE 127
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
V+ +T +KL+PLTGR+HQLRVH + G PI GD KYG
Sbjct: 128 VLN-YYDVHTLVKLNPLTGRRHQLRVHMYSI-GCPIAGDLKYG 168
>gi|423113768|ref|ZP_17101459.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5245]
gi|376387413|gb|EHT00123.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5245]
Length = 345
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R+K +Q+ Y ALV G
Sbjct: 167 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKG--------------MQKDYLALVRGQW 212
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + H T ++ SP+
Sbjct: 213 QSHTKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKVEERYPHA-TLVRCSPV 265
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 266 TGRTHQIRVHT-QYAGHPIAFDDRYG 290
>gi|320333923|ref|YP_004170634.1| pseudouridine synthase [Deinococcus maricopensis DSM 21211]
gi|319755212|gb|ADV66969.1| pseudouridine synthase [Deinococcus maricopensis DSM 21211]
Length = 294
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 56/241 (23%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
HRLDR++SG+L++ R+ ++A H +F + R +++ Y A+V G P
Sbjct: 108 AHRLDRETSGVLILTRSSSAARGFHRLFLD--------------RRVEKTYLAIVHGQPA 153
Query: 92 CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLT 151
+ + APLG + + + S R V + + AVT ++V+ Y L+ SP T
Sbjct: 154 WEEVTLDAPLGFLGLSDTNSIR---VRQGVVPDGKPAVTHFEVLG-RRGAYALLRCSPRT 209
Query: 152 GRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDL 211
GR HQLR H A LG P+VGD YG + QF + L+ +
Sbjct: 210 GRMHQLRAHLAH-LGHPMVGDKIYGPHP-EAFVQFVQTGLTPALLRTL------------ 255
Query: 212 ESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWD 271
+ PR LH E+ P T++ AP P+ +Q WD
Sbjct: 256 -------QLPRQALHAHEVAFPFGGT-----------------TVRHTAPFPADLQAFWD 291
Query: 272 V 272
Sbjct: 292 A 292
>gi|313901079|ref|ZP_07834567.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|373121536|ref|ZP_09535404.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
gi|312954037|gb|EFR35717.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|371665554|gb|EHO30719.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
Length = 304
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++G+L++ + + L + KT + R Y+ALV G
Sbjct: 130 PGIVHRIDKDTTGLLIIAKNDLAHASLSKQLQSKT--------------VNRLYYALVHG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G I AP+G+ V D K +T N ++ A T +QVI+ YT ++
Sbjct: 176 VIQHDFGTIDAPIGRDVKDRQKM-AVTATN------SKDARTHFQVIE-RFENYTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 228 LETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|288803452|ref|ZP_06408884.1| ribosomal large subunit pseudouridine synthase A [Prevotella
melaninogenica D18]
gi|288334062|gb|EFC72505.1| ribosomal large subunit pseudouridine synthase A [Prevotella
melaninogenica D18]
Length = 571
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 32/164 (19%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL----V 86
+VHRLD +SG+LV+ RT L + F E+T +++ Y AL +
Sbjct: 406 MVHRLDMATSGLLVVARTSEVHKALQAQFIERT--------------VKKKYVALLPLSI 451
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK 146
+ ++G I PL + D+ R+ N + A+T Y++I + +G LK
Sbjct: 452 LEKQLPAEGRIELPLS-LDPDDRPRQRVDRTN------GKPAITEYRLIGKTTYGKETLK 504
Query: 147 -----LSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW 183
L PLTGR HQLRVHCA + LGTPI+GD YG + R W
Sbjct: 505 AVKIELYPLTGRTHQLRVHCAHPDGLGTPIIGDNLYGQRAERLW 548
>gi|374849516|dbj|BAL52529.1| ribosomal large subunit pseudouridine synthase D [uncultured
Chloroflexi bacterium]
Length = 307
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 22/153 (14%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 85
E P +VHRLD+ +SG++++ R + + L FR R +++ Y AL
Sbjct: 129 EERPGIVHRLDKGTSGLMIVARNERAHRYLQDQFR--------------LRRVEKTYLAL 174
Query: 86 VVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL 145
V G P G I AP+G+ D R+ +++ + + A++ Y++++ + + L
Sbjct: 175 VDGHPPTPSGRIEAPIGR---DPLHRKRMAILHPGK---GREAISEYRLLE-TFPAHALL 227
Query: 146 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
++ PLTGR HQ+R+H A LG P+VGD YG +
Sbjct: 228 EVHPLTGRTHQIRLHLA-FLGCPVVGDTVYGRK 259
>gi|410098379|ref|ZP_11293357.1| RluA family pseudouridine synthase [Parabacteroides goldsteinii
CL02T12C30]
gi|409222253|gb|EKN15198.1| RluA family pseudouridine synthase [Parabacteroides goldsteinii
CL02T12C30]
Length = 303
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 13 IDELAATCLTYDY--SEPPR----LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSA 66
+ E A L DY PR ++HRLDRD+SG+++ + Q L S +
Sbjct: 116 VKERTAYHLLSDYVKKNDPRSKIFVLHRLDRDTSGLMMFAKNQRVQKALQSNWNSA---- 171
Query: 67 SKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQ 126
I QR Y A+V G P +I + L V+N K D +
Sbjct: 172 ----------ITQRSYVAVVEGRPEKDHDLIVSNL----VENAKMQVYVTAEGD----GK 213
Query: 127 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
A+TRY V+ + H Y+ L+L TGRK+Q+RV E +G PI GDYKYG T
Sbjct: 214 EAITRYHVLHSNGH-YSLLELDLETGRKNQIRVQM-ESIGHPIAGDYKYGADT 264
>gi|338813367|ref|ZP_08625496.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
gi|337274726|gb|EGO63234.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
Length = 308
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V + T+ L + +KRI R Y+A+V G
Sbjct: 134 PGIVHRLDKDTSGVMVAAKNDTAHLDLA--------------DQIQKRIAGRKYFAVVWG 179
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +GV++AP+G+ D K + + +++ AVT +++++ +T ++
Sbjct: 180 NIKEEQGVVNAPIGRHPADRKKMAVVPI-------NSKPAVTHFRILE-RFRNFTLIECK 231
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+VGD KYG
Sbjct: 232 LETGRTHQIRVHMA-YIGYPVVGDPKYG 258
>gi|434382260|ref|YP_006704043.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli WesB]
gi|404430909|emb|CCG56955.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli WesB]
Length = 222
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 23/142 (16%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLD+ +SGIL++ + + T +N+ + R + + Y A+V G P
Sbjct: 51 LVHRLDKYTSGILILAKDNNTKTYF--------------ENEFKNREINKVYHAIVEGVP 96
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ KG I + K + K RI V +I A+T Y+V+K ++ L+L P+
Sbjct: 97 KNIKGTIDIQIAKDTKNPNK--RIAVKKGGEI-----AITHYKVLK-KFKLHSLLELKPI 148
Query: 151 TGRKHQLRVHCAEVLGTPIVGD 172
TGR HQ+RVH + LG PI+GD
Sbjct: 149 TGRTHQIRVHLS-YLGNPIIGD 169
>gi|83589720|ref|YP_429729.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
gi|83572634|gb|ABC19186.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
Length = 306
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SGILV + + + +A +D+ ++R Y ALV G
Sbjct: 129 PGIVHRLDKDTSGILVAAKNDAA---------HRGLAAQIKDHS-----MKRIYLALVHG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+G + AP+G+ VD R+ V + +++ AVT Y+V++ GYT L+
Sbjct: 175 EVAEPRGRVEAPIGRHPVDR---QRMAVT----LKNSRPAVTHYRVVE-HFPGYTLLEAR 226
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+VGD KYG
Sbjct: 227 LETGRTHQIRVHMA-FIGHPVVGDPKYG 253
>gi|227326844|ref|ZP_03830868.1| 23S rRNA pseudouridylate synthase C [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 318
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN+D + + TR+++ + H T ++ SP+
Sbjct: 185 QSHCKVVQAPLLKNILQSG--ERIVRVNSD----GKQSETRFKIEERFEHA-TLVRASPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A+ G PI D +YG
Sbjct: 238 TGRTHQIRVH-AQHAGHPIAFDDRYG 262
>gi|423119726|ref|ZP_17107410.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
gi|376397565|gb|EHT10196.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
Length = 331
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 198
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI V+ + + + TR++V + H T ++ SP+
Sbjct: 199 QSHTKVVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYTHA-TLVRCSPV 251
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 252 TGRTHQIRVHT-QYAGHPIAFDDRYG 276
>gi|148285150|ref|YP_001249240.1| ribosomal large subunit pseudouridine synthase [Orientia
tsutsugamushi str. Boryong]
gi|146740589|emb|CAM81239.1| ribosomal large subunit pseudouridine synthase [Orientia
tsutsugamushi str. Boryong]
Length = 312
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 27/177 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P QGG I S+D+ A L + +LVHRLDR+++G+L++ + +A L F
Sbjct: 113 LPTQGGSKISLSLDD-AIKYLNKSFYYDFKLVHRLDRETTGLLIIAKNHGTAIKLSQAFL 171
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ +++ Y A++ G P G I + K DR+ N
Sbjct: 172 HHS--------------IEKEYIAILQGVPSQLSGEIITNITKT------GDRMIETQN- 210
Query: 121 QIMSAQHAVTRYQVIKPSCHG-YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ ++T+YQV S + + + P+TGR HQLRVH A++ G PI+GD KY
Sbjct: 211 ---GGKVSITKYQVKAISINSQLSLVSFIPVTGRTHQLRVHAAKI-GYPIIGDKKYN 263
>gi|383815882|ref|ZP_09971289.1| pseudouridine synthase [Serratia sp. M24T3]
gi|383295310|gb|EIC83637.1| pseudouridine synthase [Serratia sp. M24T3]
Length = 318
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R KT +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRMKT--------------MQKDYLALVRGEW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN++ + + TR+++ + T +K SP+
Sbjct: 185 QSHCKVVQAPLLKNILQSG--ERIVRVNSE----GKPSETRFKIEEKYAFA-TLIKASPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>gi|387792931|ref|YP_006257996.1| 23S RNA-specific pseudouridylate synthase [Solitalea canadensis DSM
3403]
gi|379655764|gb|AFD08820.1| 23S RNA-specific pseudouridylate synthase [Solitalea canadensis DSM
3403]
Length = 571
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 48/186 (25%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L Y + P +VHRLD +SGI+++ +T+ S VL F KR +++
Sbjct: 404 LKYPNATGPLIVHRLDMSTSGIMLVAKTKESHKVLQEQFI--------------KRTIKK 449
Query: 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC- 139
Y AL+ G +G I PL +V +DN H + Y+ KP+C
Sbjct: 450 RYIALLDGVVESEEGFIDLPL-RVDLDN----------------RPHQLVCYEYGKPACT 492
Query: 140 --------HGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYG-----WQTHRKWK 184
+ T + P+TGR HQLRVH A +G +PIVGD YG H +W
Sbjct: 493 KWEVVERKNNKTKIHFYPITGRTHQLRVHAAHPMGLNSPIVGDDLYGNKGERLHLHAEWI 552
Query: 185 QF-HPS 189
+F HP+
Sbjct: 553 EFKHPT 558
>gi|326795265|ref|YP_004313085.1| pseudouridine synthase [Marinomonas mediterranea MMB-1]
gi|326546029|gb|ADZ91249.1| pseudouridine synthase, RluA family [Marinomonas mediterranea
MMB-1]
Length = 324
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 21/145 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG++++ + ++ +LH REK+ +Q+ Y ALV G
Sbjct: 146 LVHRLDRDTSGLIMIAKRRSVLKLLHEALREKSG-------------VQKTYLALVHGAW 192
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
K + APL K + +G +R+ VN + + ++TR+ +++ G++ ++ P+
Sbjct: 193 SKRKQKVDAPLLKNELKSG--ERVVRVNPE----GKESLTRFNLVR-EFEGFSLIQCEPV 245
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH + G IVGD KY
Sbjct: 246 TGRTHQIRVHT-QFAGHSIVGDDKY 269
>gi|42525117|ref|NP_970497.1| pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
gi|39577328|emb|CAE81151.1| Pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
Length = 319
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 23/157 (14%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHRLD+++SGI+V+ + + L S F+E++ R Y+A+
Sbjct: 118 ERPGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERS--------------THRIYYAVC 163
Query: 87 VGTPRCSKGVISAPLGKVVVDNGK------SDRITVVN-NDQIMSAQHAVTRYQVIKPSC 139
+GT R G + + L + VD + DR + + ND + AVT ++V++
Sbjct: 164 LGTARTLSGSVRSFLARHPVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQRKS 223
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G ++LKL TGR HQ+RVH +E G PI GD YG
Sbjct: 224 -GMSYLKLKLETGRTHQIRVHMSES-GLPIAGDTLYG 258
>gi|300087236|ref|YP_003757758.1| RluA family pseudouridine synthase [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526969|gb|ADJ25437.1| pseudouridine synthase, RluA family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 301
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 34/184 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ R++ + L FR + + + Y ALV G
Sbjct: 133 PGIVHRLDKDTSGLMVVARSRQAHARLSDQFRNREVT--------------KVYLALVRG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
++G+I A +G+ ++ R + ++Q + A +R++VI+ +T L++
Sbjct: 179 CVEPAEGIIEAAIGR-----HRTQRKKMTVSEQ---GREARSRFKVIR-RFRNHTLLEVR 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF---------HPSDLSKDS-NEE 198
TGR HQ+RVH A +G P++GD YG ++ +QF HP+D K S E
Sbjct: 230 IYTGRTHQIRVHLA-AIGHPVIGDATYGAESPDFPRQFLHAHRLGFRHPTDGRKMSFTSE 288
Query: 199 IPKE 202
+P +
Sbjct: 289 LPAD 292
>gi|121605976|ref|YP_983305.1| RluA family pseudouridine synthase [Polaromonas naphthalenivorans
CJ2]
gi|120594945|gb|ABM38384.1| pseudouridine synthase, RluA family [Polaromonas naphthalenivorans
CJ2]
Length = 398
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 90/182 (49%), Gaps = 28/182 (15%)
Query: 3 VQGGIGIRRSI-DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ I ++L D+ E LVHRLDR++SGIL++ + + + +L FRE
Sbjct: 170 VHGGSGVSFGIIEQLRMARPEADFLE---LVHRLDRETSGILLIAKRRMALKLLQEQFRE 226
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
R + Y ALV G ++ VI L K ++ NG+ R+ +V ND
Sbjct: 227 --------------RETDKVYLALVSGNWPANQRVIDKALHKYLLPNGER-RVKIVANDH 271
Query: 122 IMSAQHAVTRYQVIKPSCHG-------YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 174
A +VT +V P +T L+++ TGR HQ+RVH A G PI GD K
Sbjct: 272 -PDAMRSVTLVKVKTPIAANPLAPATPFTLLEVTIKTGRTHQIRVHLAGE-GHPIAGDDK 329
Query: 175 YG 176
YG
Sbjct: 330 YG 331
>gi|406984956|gb|EKE05863.1| hypothetical protein ACD_19C00176G0085 [uncultured bacterium]
Length = 235
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 50/198 (25%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD+++SGIL++ +T+ S L F+E R++ + Y ALV G
Sbjct: 56 IVHRLDKETSGILLVAKTKESFEELQRQFKE--------------RLVHKTYIALVHGNV 101
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP---SCHGYTWLKL 147
S+G I+ P+G++ + DR V+ N + AVT+Y +I Y+ L+L
Sbjct: 102 ERSEGTINEPVGRL---PWRRDRFGVLPN-----GREAVTKYVIIDSYNLDQMTYSLLRL 153
Query: 148 SPLTGRKHQLRVHCAEVLGTPIVGDYKY-GWQT---HRKW-----------KQFHP---- 188
P TGR HQ+R+H + G PIV D Y G +T RKW K FHP
Sbjct: 154 MPQTGRTHQIRIHLKHI-GHPIVADEFYAGRKTARHDRKWCPRLFLHASEIKFFHPETKK 212
Query: 189 -----SDLSKDSNEEIPK 201
S+L+ D ++ + K
Sbjct: 213 VISFKSELTSDLDQALAK 230
>gi|90579091|ref|ZP_01234901.1| putative 23S rRNA ribosomal pseudouridinesynthase [Photobacterium
angustum S14]
gi|90439924|gb|EAS65105.1| putative 23S rRNA ribosomal pseudouridinesynthase [Photobacterium
angustum S14]
Length = 314
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRQLQEQFRN 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + + ++APL K V++ I VN
Sbjct: 171 KT--------------VQKYYFALVMGEWKANCRKVTAPLLKNEVNS-----IVRVNP-- 209
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 210 --QGKASDTRFKVLERFPQA-TLVQASPVTGRTHQIRVHC-QYEGHPIAWDDRYG 260
>gi|365904068|ref|ZP_09441827.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 297
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L + +EK+ R Y A+V G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKNNLAKQSLMNQLKEKSNL--------------REYVAIVHG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ KG+I+APLG+ +N K I + + AVT ++VI+ GY+ +KL
Sbjct: 173 NFKERKGIINAPLGR-AKNNRKKQAI-------VDDGRKAVTHFEVIE-QFEGYSLVKLK 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + +G P+ GD YG
Sbjct: 224 LETGRTHQIRVHM-QYIGHPVAGDPLYG 250
>gi|422327552|ref|ZP_16408579.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
gi|371663392|gb|EHO28582.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
Length = 304
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++G+L++ + + L + KT + R Y+ALV G
Sbjct: 130 PGIVHRIDKDTTGLLIIAKNDLAHASLSKQLQSKT--------------VNRLYYALVHG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G I AP+G+ V D K +T N ++ A T +QVI+ YT ++
Sbjct: 176 VIQHDFGTIDAPIGRDVKDRQKM-AVTATN------SKDARTHFQVIE-RFENYTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 228 LETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|410622784|ref|ZP_11333608.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410157657|dbj|GAC28982.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 315
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 33/193 (17%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ + E L A + + E LVHRLDRD+SG L++ + +++ LH
Sbjct: 109 LAVHGGSGLNFGVIEGLRALRPQHQFLE---LVHRLDRDTSGCLLIAKKRSALRDLHEQL 165
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGT--PRCSKGVISAPLGKVVVDNGKSDRITVV 117
R R + + Y ALVVG C K + APL K V+ +G +R+ V
Sbjct: 166 RS--------------RQVDKRYHALVVGEWPADCFK--VLAPLQKNVLKSG--ERLVSV 207
Query: 118 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG- 176
+DQ +++ TRY++++ T ++ SP+TGR HQ+RVHC G PI D KYG
Sbjct: 208 -SDQGKASE---TRYRILQSYARS-TLIEASPVTGRTHQIRVHCLHA-GHPIAMDSKYGD 261
Query: 177 --WQTHRKWKQFH 187
+ H K +F+
Sbjct: 262 DEFDAHLKKLKFN 274
>gi|375266159|ref|YP_005023602.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. EJY3]
gi|369841480|gb|AEX22624.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. EJY3]
Length = 314
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRA 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYAGHPIAWDDRYG 260
>gi|422023014|ref|ZP_16369520.1| 23S rRNA pseudouridylate synthase C [Providencia sneebia DSM 19967]
gi|414094744|gb|EKT56408.1| 23S rRNA pseudouridylate synthase C [Providencia sneebia DSM 19967]
Length = 318
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 78/146 (53%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SGIL++ + +++ LH R K +Q+ Y ALV G
Sbjct: 138 LVHRLDRDTSGILLVAKKRSALRALHEQLRLKQ--------------MQKDYMALVRGNW 183
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K ++ +G +RI VN + + + TR++V + T +K SP+
Sbjct: 184 QSHTKVIQAPLLKNILQSG--ERIVRVNPE----GKPSETRFKV-EERFDNATLVKASPV 236
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH G PI D +YG
Sbjct: 237 TGRTHQIRVHTLHA-GHPIAFDNRYG 261
>gi|407001645|gb|EKE18590.1| hypothetical protein ACD_9C00289G0006 [uncultured bacterium]
Length = 310
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 20/148 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ R + L +F+ R +++ Y A+ G
Sbjct: 137 PGIVHRLDKDTSGVMVIARNIATLEKLKELFK--------------NRNIEKTYLAITSG 182
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G+I P+ + + + + N+ + + A T ++V+K + Y+ +++S
Sbjct: 183 IFKEKIGIIDKPIAR----STSYKKQVIARNNTKTTIRSAETHFRVLK-EFNEYSLVEVS 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
P TGR HQ+R+H + +G P+VGD YG
Sbjct: 238 PKTGRMHQIRIHLS-FIGHPVVGDLIYG 264
>gi|417937499|ref|ZP_12580799.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
gi|343391763|gb|EGV04336.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
Length = 297
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 28/150 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDEAHMALAQELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLK 146
+GVI AP+G+ D K Q ++A+ AVTR+QV++ YT L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE-RFGDYTLLE 219
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L TGR HQ+RVH A +G P+ GD YG
Sbjct: 220 LQLETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|261346051|ref|ZP_05973695.1| ribosomal large subunit pseudouridine synthase [Providencia
rustigianii DSM 4541]
gi|282565938|gb|EFB71473.1| ribosomal large subunit pseudouridine synthase [Providencia
rustigianii DSM 4541]
Length = 318
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SGIL++ + +++ LH R K +Q+ Y ALV G
Sbjct: 138 LVHRLDRDTSGILLVAKKRSALRALHEQLRLKQ--------------MQKDYLALVRGNW 183
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN++ + + TR++V + T +K SP+
Sbjct: 184 QSHMKVVQAPLLKNILQSG--ERIVRVNSE----GKPSETRFKV-EERFDNATLVKASPV 236
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH G PI D +YG
Sbjct: 237 TGRTHQIRVHTLHA-GHPIAFDDRYG 261
>gi|407778588|ref|ZP_11125851.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
gi|407299665|gb|EKF18794.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
Length = 338
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 21/154 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDRD+SG++V +T + L F + S L+R Y ALV
Sbjct: 138 PGIVHRLDRDTSGVMVAAKTDQAHRALSEAFADHGRSGD----------LERAYSALVWD 187
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G + APLG+ + +S + V + A+HAVT YQV K L+
Sbjct: 188 APDRWAGTVDAPLGR----DPRSRTLRAVVPEGRADARHAVTHYQVQKRYGSDGKGGALA 243
Query: 149 PL------TGRKHQLRVHCAEVLGTPIVGDYKYG 176
L TGR HQ+RVH A + G P++GD YG
Sbjct: 244 ALIECRLETGRTHQIRVHMAHI-GHPLIGDLDYG 276
>gi|209809356|ref|YP_002264894.1| putative RNA pseudouridylate synthase [Aliivibrio salmonicida
LFI1238]
gi|208010918|emb|CAQ81323.1| putative RNA pseudouridylate synthase [Aliivibrio salmonicida
LFI1238]
Length = 561
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 24/161 (14%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y + P +VHRLD +SG+LV+ T + + F ++T EKR Y
Sbjct: 396 YPQATGPLIVHRLDMSTSGLLVLTLTAETNKQVQKQFIDRTV---------EKR-----Y 441
Query: 83 WALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGY 142
AL+ G + G+I PL + D + +V++ Q + A T +QVI+ + +
Sbjct: 442 TALLEGNIALNDGIIDLPLTGDLEDRPRQ----MVDHKQ---GRKAETTFQVIERN-NNQ 493
Query: 143 TWLKLSPLTGRKHQLRVHCAEV--LGTPIVGDYKYGWQTHR 181
T + L P TGR HQLRVHCA LGTPIVGD YG++++R
Sbjct: 494 TKVYLYPKTGRTHQLRVHCAHQAGLGTPIVGDDLYGFKSNR 534
>gi|59713667|ref|YP_206442.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
ES114]
gi|59481915|gb|AAW87554.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
ES114]
Length = 576
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 24/161 (14%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y + P +VHRLD +SG+LV+ T S + F E+T EKR Y
Sbjct: 411 YPNATGPLIVHRLDMSTSGLLVLTLTAESNKQVQKQFIERTV---------EKR-----Y 456
Query: 83 WALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGY 142
AL+ G G I+ PL + D + +VN+ S + A T YQVI
Sbjct: 457 TALLEGNIETDNGTINLPLTGDMEDRPRQ----MVNHK---SGRKAETHYQVIAQEG-KR 508
Query: 143 TWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 181
T + L P TGR HQLRVHCA G TPIVGD YG++ R
Sbjct: 509 TKVHLYPHTGRTHQLRVHCAHQAGLNTPIVGDDLYGFKADR 549
>gi|346314172|ref|ZP_08855693.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906530|gb|EGX76254.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 304
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D++G+L++ + + L + KT + R Y+ALV G
Sbjct: 130 PGIVHRIDKDTTGLLIVAKNDLAHASLSKQLQSKT--------------VNRLYYALVHG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G I AP+G+ V D K +T N ++ A T +QVI+ YT ++
Sbjct: 176 VIQHDFGTIDAPIGRDVKDRQKM-AVTATN------SKDARTHFQVIE-RFENYTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 228 LETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|423686523|ref|ZP_17661331.1| ribosomal large subunit pseudouridine synthase C [Vibrio fischeri
SR5]
gi|371494591|gb|EHN70189.1| ribosomal large subunit pseudouridine synthase C [Vibrio fischeri
SR5]
Length = 315
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRRLQEQFRN 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGQWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIGWDDRYG 260
>gi|322387558|ref|ZP_08061167.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|419843101|ref|ZP_14366425.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
gi|321141425|gb|EFX36921.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|385703203|gb|EIG40329.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
Length = 297
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 28/150 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDEAHMALAQELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLK 146
+GVI AP+G+ D K Q ++A+ AVTR+QV++ YT L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE-RFGDYTLLE 219
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L TGR HQ+RVH A +G P+ GD YG
Sbjct: 220 LQLETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|167771408|ref|ZP_02443461.1| hypothetical protein ANACOL_02774 [Anaerotruncus colihominis DSM
17241]
gi|167666048|gb|EDS10178.1| pseudouridine synthase, RluA family [Anaerotruncus colihominis DSM
17241]
Length = 306
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L + +F+ R Y A+V G
Sbjct: 133 PGIVHRIDKDTSGLLIVAKNDAAHGTLAEQIKNHSFT--------------RIYNAVVYG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+G + AP+G+ ++DR + D+ +A+ AVT Y+V++ +TWLKL
Sbjct: 179 GFSTDEGTVDAPIGR-----SQNDRKKMCVTDR--NARGAVTHYRVLE-RLGRFTWLKLC 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH A + G P+ GD YG Q
Sbjct: 231 LETGRTHQIRVHMAYI-GHPVAGDPIYGPQ 259
>gi|315121810|ref|YP_004062299.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495212|gb|ADR51811.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 340
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 21/153 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ + + L F + L+R Y+A+V G
Sbjct: 142 PGIVHRLDKDTTGTMVVAKNDIAHQRLSEQFADHGLHMG----------LKRSYYAMVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRI-TVVNNDQIMSAQHAVTRYQVI----KPSCHGYT 143
P G I+APLG+ KS+R+ V + + AVTRYQ + K S +
Sbjct: 192 VPSPDSGTINAPLGRC-----KSNRLRRAVKRIEDKTGDRAVTRYQTVEIYNKNSNFAAS 246
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L+ TGR HQ+RVH A G PI+GD YG
Sbjct: 247 LLRCDLETGRTHQIRVHMAHK-GYPIIGDPLYG 278
>gi|331269364|ref|YP_004395856.1| RluA family pseudouridine synthase [Clostridium botulinum
BKT015925]
gi|329125914|gb|AEB75859.1| pseudouridine synthase, RluA family [Clostridium botulinum
BKT015925]
Length = 304
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ + + +L +E + ++R Y A+V G
Sbjct: 131 PGIVHRIDKDTSGVLVVAKNNKAHEILAEQLKEHS--------------MKREYIAVVEG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G++ PLG+ DRI + + ++AVT Y+V+K T +K
Sbjct: 177 IVKEENGLVDEPLGR-----NPKDRIKMA---VVEGGKNAVTHYEVLK-RFKKNTLVKCI 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH + +G P+VGD YG++ R
Sbjct: 228 LETGRTHQIRVHMS-YIGHPLVGDPMYGFKKQR 259
>gi|54295134|ref|YP_127549.1| ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Lens]
gi|53754966|emb|CAH16454.1| Ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Lens]
Length = 315
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 27/178 (15%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L T Y E LVHRLDR++SG L++ + +++ +H++
Sbjct: 105 IAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRETSGCLLLAKKRSTLRAIHALL 161
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGV-ISAPLGKVVVDNGKSDRITVVN 118
E R +Q+ YWAL+ K + I+APL K + +G +R+ V
Sbjct: 162 --------------EAREVQKIYWALLTHRWDGKKKITITAPLEKNTLKSG--ERVVSVQ 205
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + T +++++ + H W++ SP TGR HQ+RVH A G IVGD KYG
Sbjct: 206 KD----GKASETDFKLLE-NYHQACWVEASPKTGRTHQIRVHSA-YFGHVIVGDEKYG 257
>gi|399516219|ref|ZP_10757830.1| Ribosomal large subunit pseudouridine synthase D [Leuconostoc
pseudomesenteroides 4882]
gi|398648947|emb|CCJ65857.1| Ribosomal large subunit pseudouridine synthase D [Leuconostoc
pseudomesenteroides 4882]
Length = 312
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + + SA + + N QR Y ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDVA---------HQALSAQLKAHKN-----QRIYIALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G ISAPL + VD K +T + A+T +QV+K GYT L++
Sbjct: 175 EFQEDTGTISAPLARHKVDR-KKQAVT-------EGGREAITHFQVLKRFV-GYTLLQVR 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PIVGD YG
Sbjct: 226 LETGRTHQIRVHMTYI-GHPIVGDPVYG 252
>gi|332638853|ref|ZP_08417716.1| pseudouridine synthase [Weissella cibaria KACC 11862]
Length = 304
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + ++ SA +D N R Y+ALV G
Sbjct: 128 PGIVHRIDKDTSGLLMVAKNDKA---------HESLSAQLKDKKN-----LRQYYALVHG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
++G I APLG+ D K + + AVT ++V+K GYT L+++
Sbjct: 174 EFVENEGTIKAPLGRSSADRKKQAVVA--------GGRDAVTHFKVVKRFV-GYTLLQVT 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + G P+ GD YG
Sbjct: 225 LETGRTHQIRVHMAYI-GHPVAGDPLYG 251
>gi|53712433|ref|YP_098425.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis YCH46]
gi|52215298|dbj|BAD47891.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis YCH46]
Length = 539
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 23 YDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWY 82
Y + P +VHRLD +SG+L+ +TQ L + F E R +++ Y
Sbjct: 374 YPEATGPLVVHRLDMATSGLLLAAKTQEVHRHLQAQF--------------ENRSIKKRY 419
Query: 83 WALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGY 142
AL+ G +GVI P+ +D + +VN + + A+TRYQV+ +G
Sbjct: 420 IALLDGILPEEEGVIDLPICPDYLDRPRQ----MVNEE---LGKTAITRYQVMDRK-NGQ 471
Query: 143 TWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 183
T + PLTGR HQLRVH A LG PIVGD YG + R +
Sbjct: 472 TRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKAERLY 514
>gi|332288916|ref|YP_004419768.1| 23S rRNA pseudouridylate synthase C [Gallibacterium anatis UMN179]
gi|330431812|gb|AEC16871.1| 23S rRNA pseudouridylate synthase C [Gallibacterium anatis UMN179]
Length = 321
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHRLDRD+SGIL++ + +++ LH
Sbjct: 117 IAVHGGSGLSFGVIEALRALRPQAKFLE---LVHRLDRDTSGILLVAKKRSALRNLHQQL 173
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT +Q+ Y ALV G + V+ APL K + +G +RI V++
Sbjct: 174 REKT--------------IQKDYLALVRGEWQSHCKVVKAPLLKNELSSG--ERIVKVSD 217
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V + T +K SP+TGR HQ+RVH + G PI D KYG
Sbjct: 218 Q----GKPSETRFKV-EERFKIATLVKASPVTGRTHQIRVHT-QYAGHPIAFDSKYG 268
>gi|299535889|ref|ZP_07049209.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|424738829|ref|ZP_18167258.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
gi|298728641|gb|EFI69196.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|422947313|gb|EKU41710.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
Length = 303
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + T+ L + KT + R Y ALV G
Sbjct: 131 PGIVHRIDKDTSGLLMVAKNDTAHESLVNQLVNKTVT--------------RKYIALVHG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
KG I AP+G+ D + VV+N +HAVT +QV++ YT ++
Sbjct: 177 HIAHDKGTIDAPIGR---DQKDRQKQAVVDN-----GKHAVTHFQVVE-RFGDYTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH +G P+VGD KYG
Sbjct: 228 LETGRTHQIRVHM-NYIGFPLVGDPKYG 254
>gi|159900009|ref|YP_001546256.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
gi|159893048|gb|ABX06128.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
Length = 560
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 22/160 (13%)
Query: 33 HRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRC 92
RLDRD+SG+++ + L + F E T +++ Y ALV G P
Sbjct: 52 QRLDRDTSGVMLFALDPAANANLATAFAEHT--------------IEKTYQALVYGVPIQ 97
Query: 93 SKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC-HGYTWLKLSPLT 151
++GVI A L D + V + AQ A+T Y+V+ S ++ L+L P T
Sbjct: 98 TQGVIDAALAPA------GDGMIQVASAHDRRAQSAITHYRVLVSSPDQRFSLLELQPKT 151
Query: 152 GRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 191
GR HQLRVHC E LG PIVGD Y H S+L
Sbjct: 152 GRTHQLRVHC-ECLGHPIVGDPLYDVARAAPRLMLHASEL 190
>gi|113460859|ref|YP_718926.1| 23S rRNA pseudouridylate synthase C [Haemophilus somnus 129PT]
gi|112822902|gb|ABI24991.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
somnus 129PT]
Length = 326
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SGIL++ + +++ LH REKT +Q+ Y ALV G
Sbjct: 144 LVHRLDRDTSGILLIAKKRSALRSLHEQLREKT--------------IQKEYLALVRGHW 189
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ +I APL K + +G +RI VN + + T++ V + + T +K SP+
Sbjct: 190 QSHCKMIQAPLLKNELTSG--ERIVKVNE----QGKPSETKFSV-EERYNNATLVKASPI 242
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 243 TGRTHQIRVHT-QYAGHPIALDDKYG 267
>gi|121601705|ref|YP_988611.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760423|ref|ZP_16197240.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
gi|120613882|gb|ABM44483.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411175707|gb|EKS45732.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
Length = 336
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 21/164 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+++SG++V+ + + K SA D+ +L R Y AL+ G
Sbjct: 132 PGIVHRLDKNTSGVIVVAKNDLA---------HKGLSAQFSDH-GRTGVLDRRYHALIWG 181
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP--SCHG----Y 142
+P + GVI+A LG+ D K V+++ I A+HAVT + VI+ +C
Sbjct: 182 SPNRNIGVITASLGRARYDRTKQ---AVIHSHNIY-ARHAVTHFSVIEKYQTCADKIPFA 237
Query: 143 TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 186
+ L+ TGR HQ+RVH A + G P+VGD YG K +F
Sbjct: 238 SLLECRLETGRTHQIRVHMAHI-GHPLVGDTVYGNAFKTKSNRF 280
>gi|424896721|ref|ZP_18320295.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180948|gb|EJC80987.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 341
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G++V+ + + L F + + L+R Y A+V G
Sbjct: 142 PGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMP----------LERAYQAVVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-----KPSCHGYT 143
PR G + APLG+ D G R V D A A+T YQVI KP
Sbjct: 192 RPRSLTGTVDAPLGR---DTGDRTRRAVKRPDS-HDADEAITHYQVIERFQEKPDATALA 247
Query: 144 WLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSN 196
L L TGR HQ+RVH A + G P++GD YG K + P D+ K N
Sbjct: 248 SLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYGAGFKTKANRL-PEDIRKVVN 299
>gi|296445496|ref|ZP_06887453.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
gi|296257062|gb|EFH04132.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
Length = 338
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+LV+ +T + L +F + S L R Y A V G
Sbjct: 147 PGIVHRIDKDTSGLLVVAKTDAAHKGLSRLFEDHGRSLG----------LMREYLAFVWG 196
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P ++G + AP+G+ + + +R+ VV+ ++ + A+T +++I+ G L
Sbjct: 197 VPERARGTVEAPIGRHSI---QRERMAVVSEER---GREAITHWELIE--SFGVVSLVAC 248
Query: 149 PL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 189
L TGR HQ+RVH A + G P++GD YG K P+
Sbjct: 249 RLETGRTHQIRVHMAHI-GHPLIGDATYGAGFKTKTALLAPA 289
>gi|428201072|ref|YP_007079661.1| RluA family pseudouridine synthase [Pleurocapsa sp. PCC 7327]
gi|427978504|gb|AFY76104.1| pseudouridine synthase, RluA family [Pleurocapsa sp. PCC 7327]
Length = 309
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 21/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G LV+ +T+ + L + + KT +R Y +V G
Sbjct: 129 PGIVHRLDKDTTGALVIAKTEFAHQNLQAQLKAKTA--------------RREYLGIVYG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ G+I+ P+G+ VD K + V + A+T +Q+++ YT ++
Sbjct: 175 VPKTESGIINLPIGRHRVDRKKMAVVPVEK-----GGREAITHWQILE-RLGNYTLMQFR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH ++ +G PIVGD Y
Sbjct: 229 LETGRTHQIRVHSSQ-MGHPIVGDPLY 254
>gi|59712354|ref|YP_205130.1| 23S rRNA pseudouridylate synthase [Vibrio fischeri ES114]
gi|59480455|gb|AAW86242.1| 23S rRNA pseudouridylate synthase [Vibrio fischeri ES114]
Length = 315
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRRLQEQFRN 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGQWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVLE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIGWDDRYG 260
>gi|194334247|ref|YP_002016107.1| RluA family pseudouridine synthase [Prosthecochloris aestuarii DSM
271]
gi|194312065|gb|ACF46460.1| pseudouridine synthase, RluA family [Prosthecochloris aestuarii DSM
271]
Length = 347
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 56/238 (23%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+++SG++++ + ++T LH + R+ F+ R +++ Y A+V G
Sbjct: 152 PGIVHRLDKNTSGLIIIAK---NSTALHRLARQ--FA---------NRQVEKKYQAIVWG 197
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P + G+I +G+ V ++ ++ + + A+T Y+V + C+ ++ ++++
Sbjct: 198 VPEPATGLIKTNIGRSV----RNRKVMTSYPFEGKDGKTAITEYRVQQSLCY-FSLVEVT 252
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+RVH LG PI+GD YG + R +P K+ F
Sbjct: 253 LHTGRTHQIRVHMQH-LGHPILGDETYGGSSIRN----------------LPFSKSESFV 295
Query: 209 LDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHM 266
+L LE PR LH + +T Q ++G E L APLP M
Sbjct: 296 KNL-----LETIPRQALHAESLTF---------TQPTTG------ERLSFTAPLPEDM 333
>gi|33864373|ref|NP_895933.1| pseudouridylate synthase specific to ribosomal large subunit
[Prochlorococcus marinus str. MIT 9313]
gi|33641153|emb|CAE22283.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9313]
Length = 324
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ ++Q + L +KRI R Y A+V G
Sbjct: 145 PGIVHRLDKDTTGCIVIAKSQEALVKLQEQI--------------QKRIASRNYLAVVHG 190
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P +G I A +G+ VD K VV D +HA T + +++ Y+ L+
Sbjct: 191 APSGDQGTIVAAIGRHPVDRKK---YAVVTED---GGRHACTHWTLVE-RLADYSLLRFK 243
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVHCA + G PIVGD Y
Sbjct: 244 LDTGRTHQIRVHCAHI-GHPIVGDPIY 269
>gi|418008048|ref|ZP_12647919.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
gi|410547807|gb|EKQ22033.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
Length = 306
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSV--------------REYLALVHG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFEH-YTFIKCI 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|440781918|ref|ZP_20960146.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
gi|440220636|gb|ELP59843.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
Length = 306
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 24/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + + L +E T + R Y ALV G
Sbjct: 132 PGIVHRIDKDTSGILVVAKNDKAHKFLAEQLKEHTMT--------------RVYLALVEG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G + PLG+ V+ K I+V+ + ++AVT Y V++ T ++
Sbjct: 178 IIKVDEGKVDVPLGRHPVERIK---ISVIKD-----GRNAVTHYNVME-RFKNNTLIECR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + G P+VGD YG++ R
Sbjct: 229 LETGRTHQIRVHMAHI-GHPLVGDPLYGYKKQR 260
>gi|390630849|ref|ZP_10258823.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
gi|390483904|emb|CCF31171.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
Length = 305
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + + SA +D N R Y+ALV G
Sbjct: 128 PGIVHRIDKDTSGLLMVAKNDKA---------HEALSAQLKDKKN-----LRQYYALVHG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
++G I APLG+ D K + + AVT ++V+K GYT L+++
Sbjct: 174 EFIENEGTIKAPLGRSSADRKKQAVVA--------GGRDAVTHFKVVKRFV-GYTLLQVT 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 225 LETGRTHQIRVHMA-YIGHPVAGDPLYG 251
>gi|160933118|ref|ZP_02080507.1| hypothetical protein CLOLEP_01961 [Clostridium leptum DSM 753]
gi|156868192|gb|EDO61564.1| pseudouridine synthase, RluA family [Clostridium leptum DSM 753]
Length = 306
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L +E +F +R Y A+V G
Sbjct: 133 PGIVHRIDKDTSGLLMVAKNDFAHQGLARQIKEHSF--------------RREYEAVVAG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GV++AP+G+ +D K + V + ++ AVT ++VI GYT ++L
Sbjct: 179 RMKQESGVVNAPIGRHPIDRKK---MAVTEKN----SKEAVTYFRVIA-EYPGYTHIRLR 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A LG P+ GD YG
Sbjct: 231 LETGRTHQIRVHMA-YLGHPVAGDPAYG 257
>gi|220909998|ref|YP_002485309.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219866609|gb|ACL46948.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 313
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 22/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG + + +T+ + L + + KT +R Y +V G
Sbjct: 127 PGIVHRLDKDTSGAIAIAKTELAHRHLQAQIKAKTA--------------RREYLGVVYG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ S G I P+G+ VD K + VV +D+ + AVT +Q I+ +T L+
Sbjct: 173 VPKTSSGRIDLPIGRHPVDRKK---MAVVASDK---GRSAVTHWQ-IQERLGNFTLLQFQ 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH A+ LG PIVGD Y
Sbjct: 226 LETGRTHQIRVHIAQ-LGHPIVGDPLY 251
>gi|417989705|ref|ZP_12630206.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|417996323|ref|ZP_12636604.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|418015330|ref|ZP_12654905.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
gi|410535634|gb|EKQ10251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|410537450|gb|EKQ12024.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|410551806|gb|EKQ25849.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
Length = 306
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVRG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFEH-YTFIKCI 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|366085944|ref|ZP_09452429.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus zeae KCTC
3804]
Length = 306
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVHG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT +K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFAH-YTLIKCV 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|417936057|ref|ZP_12579374.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
gi|343402966|gb|EGV15471.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
Length = 297
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 28/150 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMVAKNDEAHLALAQELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLK 146
+GVI AP+G+ D K Q ++A+ AVTR+QV++ YT L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE-RFGDYTLLE 219
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L TGR HQ+RVH A +G P+ GD YG
Sbjct: 220 LQLETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|330829706|ref|YP_004392658.1| 23S rRNA pseudouridylate synthase C [Aeromonas veronii B565]
gi|423206688|ref|ZP_17193244.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AMC34]
gi|328804842|gb|AEB50041.1| 23S rRNA pseudouridylate synthase C [Aeromonas veronii B565]
gi|404622240|gb|EKB19105.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AMC34]
Length = 327
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ + E L A + E LVHRLDRD+SG+L++ + +++ LH
Sbjct: 123 MAVHGGSGLSFGVIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQL 179
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +++ Y ALV G + V++APL K + +G +R+ V+
Sbjct: 180 RVKT--------------MRKQYLALVRGKWQAHVKVVNAPLRKNDLQSG--ERVVRVSA 223
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + TR+++++ T ++ SP+TGR HQ+RVH G PI D KYG
Sbjct: 224 D----GKPSETRFRIVRQFAEA-TLVECSPITGRTHQIRVHTLHA-GHPIACDDKYG 274
>gi|295688944|ref|YP_003592637.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430847|gb|ADG10019.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
Length = 271
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 24/161 (14%)
Query: 21 LTYDYSEP----PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKR 76
L + +++P PRL+HRLDRD+SG+++ +T+ A L K F S
Sbjct: 67 LLWAFAKPGKARPRLIHRLDRDTSGVILTAKTKPGAAFLGEAMMAKRFRKS--------- 117
Query: 77 ILQRWYWALVV-GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
Y A+V G P G+I +PL + + R+ ++ + A+ A +RY+ +
Sbjct: 118 -----YLAIVAPGAPEPKGGMIDSPLRRESIGREAYMRVCAPDHPE---AETARSRYRTL 169
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ ++LSP TGR HQLRVH A + G P+ GD +YG
Sbjct: 170 A-ANATAALVELSPDTGRMHQLRVHMASI-GRPLAGDSRYG 208
>gi|406677048|ref|ZP_11084233.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AMC35]
gi|423209600|ref|ZP_17196154.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AER397]
gi|404617458|gb|EKB14394.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AER397]
gi|404625362|gb|EKB22179.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AMC35]
Length = 314
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ + E L A + E LVHRLDRD+SG+L++ + +++ LH
Sbjct: 110 MAVHGGSGLSFGVIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQL 166
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +++ Y ALV G + V++APL K + +G +R+ V+
Sbjct: 167 RVKT--------------MRKQYLALVRGKWQAHVKVVNAPLRKNDLQSG--ERVVRVSA 210
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + TR+++++ T ++ SP+TGR HQ+RVH G PI D KYG
Sbjct: 211 D----GKPSETRFRIVRQFAEA-TLVECSPITGRTHQIRVHTLHA-GHPIACDDKYG 261
>gi|146296933|ref|YP_001180704.1| RluA family pseudouridine synthase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410509|gb|ABP67513.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 300
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ +T + L + ++R Y+A+ G
Sbjct: 125 PGIVHRLDKDTSGLLIVAKTDEAHIKLSEALKSHQ--------------IKRIYYAICEG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI+AP+G+ V+ K + VV N + AVT ++V++ YT++KL
Sbjct: 171 VLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE-RFDKYTFIKLR 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+RVH + + G P++GD YG + Q + K LHF
Sbjct: 222 LKTGRTHQIRVHMSYI-GYPLLGDSSYGRAKNEFGVQGQVLHAGEIEFVHPITSKVLHFS 280
Query: 209 LDL 211
DL
Sbjct: 281 ADL 283
>gi|402829215|ref|ZP_10878091.1| pseudouridine synthase, RluA family [Slackia sp. CM382]
gi|402284196|gb|EJU32699.1| pseudouridine synthase, RluA family [Slackia sp. CM382]
Length = 316
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 38/185 (20%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLDRD+SG+++ +T + L D R + R Y ALV G
Sbjct: 136 IVHRLDRDTSGLMLAAKTDAAGLRLM--------------EDIASRDVDRHYLALVHGWI 181
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK---PSCH--GYTWL 145
G+I AP+G+ DR+ + +D+ SA+ A T ++V++ PS GYT +
Sbjct: 182 PLDTGLIDAPIGR-----SAKDRLRMCVSDR-ESARPASTSFRVVRRFEPSRRDDGYTLI 235
Query: 146 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW---KQF---------HPSDLSK 193
TGR HQ+RVH AE + P VGD YGW H +QF HPS ++
Sbjct: 236 DCKLFTGRTHQIRVH-AEYIKHPCVGDPTYGWPKHDNLGLERQFLHSYRLAFTHPSTGTR 294
Query: 194 DSNEE 198
S E+
Sbjct: 295 LSFED 299
>gi|159902752|ref|YP_001550096.1| pseudouridylate synthase [Prochlorococcus marinus str. MIT 9211]
gi|159887928|gb|ABX08142.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9211]
Length = 327
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 22/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ +TQ + L + R+ R Y A+V G
Sbjct: 144 PGIVHRLDKDTTGCIVVAKTQEALVNLQKQI--------------QTRVASRIYLAIVHG 189
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ KG I +G+ VD K VV N+ A++A T ++ +K Y+ L
Sbjct: 190 VPKGDKGTIIGAIGRHPVDRKK---YAVVTNEM---ARYACTHWE-LKERLGDYSLLSFK 242
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVHCA G PI+GD Y
Sbjct: 243 LDTGRTHQIRVHCAH-FGHPILGDQTY 268
>gi|367469626|ref|ZP_09469368.1| Ribosomal large subunit pseudouridine synthase D [Patulibacter sp.
I11]
gi|365815303|gb|EHN10459.1| Ribosomal large subunit pseudouridine synthase D [Patulibacter sp.
I11]
Length = 313
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
L+ T D E P +VHRLDR++SG+L++ R + L RE++ +
Sbjct: 125 LSTTSPPGDDPERPGIVHRLDRETSGLLLIARDDATHRALQEAIRERSVT---------- 174
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
R Y ALV G P G I AP+G+ D + R ++ + S + AVT + I
Sbjct: 175 ----REYLALVDGRPDARSGTIDAPIGR---DRHQRTRHSLDTD----SPRRAVTHF-TI 222
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + L+++ TGR HQ+RVH + +G P+VGD +YG
Sbjct: 223 EELLPRTSLLRVTLETGRTHQIRVHL-KAIGLPVVGDPEYG 262
>gi|268315647|ref|YP_003289366.1| pseudouridine synthase [Rhodothermus marinus DSM 4252]
gi|262333181|gb|ACY46978.1| pseudouridine synthase [Rhodothermus marinus DSM 4252]
Length = 235
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 34/151 (22%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD+++SG+L+ R + ++++F E+R +++ Y ALV G
Sbjct: 48 VVHRLDKEASGVLLFARNAEAHRYMNTLF--------------EQRQVRKVYRALVHGRL 93
Query: 91 RCSKGVISAPL-----GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL 145
+G I AP+ G++ VD + + + TRY+V++ Y+ +
Sbjct: 94 EPGQGQIRAPIRMYGSGRMGVDPER--------------GKPSETRYRVLEYLDEAYSLI 139
Query: 146 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ PLTGR+HQ+RVHC + G PIVGD +YG
Sbjct: 140 EALPLTGRRHQIRVHCYHI-GHPIVGDPRYG 169
>gi|222054127|ref|YP_002536489.1| RluA family pseudouridine synthase [Geobacter daltonii FRC-32]
gi|221563416|gb|ACM19388.1| pseudouridine synthase, RluA family [Geobacter daltonii FRC-32]
Length = 319
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SGILV+ + S L FRE + ++R Y A+V G
Sbjct: 131 PGIVHRIDKDTSGILVVAKNDASHLALSEQFREHS--------------IKRIYIAIVYG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+P+ G + + +G+ VD + + + +HAVT ++VI G ++L
Sbjct: 177 SPKTDSGRLESIIGRHPVDRKRM-------SGKARHGKHAVTHWRVIG-RYPGMCLIRLR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH +E G P+VGD YG
Sbjct: 229 LETGRTHQIRVHLSEA-GHPLVGDEVYG 255
>gi|269215565|ref|ZP_06159419.1| ribosomal large subunit pseudouridine synthase D [Slackia exigua
ATCC 700122]
gi|269131052|gb|EEZ62127.1| ribosomal large subunit pseudouridine synthase D [Slackia exigua
ATCC 700122]
Length = 316
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 38/185 (20%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLDRD+SG+++ +T + L D R + R Y ALV G
Sbjct: 136 IVHRLDRDTSGLMLAAKTDAAGLRLM--------------EDIAARDVDRHYLALVHGWI 181
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK---PSCH--GYTWL 145
G+I AP+G+ DR+ + +D+ SA+ A T ++V++ PS GYT +
Sbjct: 182 PLDTGLIDAPIGR-----SAKDRLRMCVSDR-ESARPASTSFRVVRRFEPSRRDDGYTLI 235
Query: 146 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW---KQF---------HPSDLSK 193
TGR HQ+RVH AE + P VGD YGW H +QF HPS ++
Sbjct: 236 DCKLFTGRTHQIRVH-AEYIKHPCVGDPTYGWPKHDNLGLERQFLHSYRLAFTHPSTGAR 294
Query: 194 DSNEE 198
S E+
Sbjct: 295 LSFED 299
>gi|307262378|ref|ZP_07544024.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306867926|gb|EFM99756.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 326
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 147 LVHRIDRDTSGILLVAKKRSALRSLHEQLREK--------------VVQKDYLALVRGQW 192
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + + TR+ I+ T +K SP+
Sbjct: 193 QAHTKVIKAPLLKNELASG--ERIVRVSEE----GKPSETRFS-IEERYANATLVKASPV 245
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 246 TGRTHQIRVHT-QYAGHPIALDDKYG 270
>gi|239631456|ref|ZP_04674487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980747|ref|ZP_12621427.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|417984062|ref|ZP_12624690.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
gi|239525921|gb|EEQ64922.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525070|gb|EKP99977.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|410526714|gb|EKQ01596.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
Length = 306
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVHG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFEH-YTFIKCI 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|114799098|ref|YP_762171.1| RluA family pseudouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114739272|gb|ABI77397.1| pseudouridine synthase, RluA family [Hyphomonas neptunium ATCC
15444]
Length = 341
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 30/163 (18%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHRLD+ +SG++V +T+++ T L ++F E+ + R Y A+
Sbjct: 131 ERPGIVHRLDKLTSGVMVAAKTESAHTGLAALF--------------ERHDIDRVYRAVT 176
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGY---- 142
G PR G I A + + D K ++V N +A+HAVT Y+ ++ GY
Sbjct: 177 RGAPRPLSGTIEAAIARSESDRKK---MSVHRNPDSPAARHAVTHYKAVE--TFGYKDRA 231
Query: 143 TWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
T L + L TGR HQ+RVH A G P++GD YG Q
Sbjct: 232 TRLPAAALLECRLETGRTHQIRVHMAHS-GAPLIGDPVYGRQA 273
>gi|190151234|ref|YP_001969759.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307246812|ref|ZP_07528878.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307251150|ref|ZP_07533072.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307253568|ref|ZP_07535436.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307255795|ref|ZP_07537597.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257984|ref|ZP_07539737.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307260247|ref|ZP_07541955.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307264584|ref|ZP_07546167.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189916365|gb|ACE62617.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306852283|gb|EFM84522.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306856816|gb|EFM88950.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858948|gb|EFM90993.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306861258|gb|EFM93250.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863531|gb|EFM95461.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865694|gb|EFM97574.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870113|gb|EFN01874.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 326
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 147 LVHRIDRDTSGILLVAKKRSALRSLHEQLREK--------------VVQKDYLALVRGQW 192
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + + TR+ I+ T +K SP+
Sbjct: 193 QAHTKVIKAPLLKNELASG--ERIVRVSEE----GKPSETRFS-IEERYANATLVKASPV 245
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 246 TGRTHQIRVHT-QYAGHPIALDDKYG 270
>gi|417992968|ref|ZP_12633319.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
gi|410532377|gb|EKQ07085.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
Length = 291
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVRG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFEH-YTFIKCI 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|344996038|ref|YP_004798381.1| RluA family pseudouridine synthase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964257|gb|AEM73404.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 300
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ +T + L + ++R Y+A+ G
Sbjct: 125 PGIVHRLDKDTSGLLIVAKTDEAHIKLSEALKSHQ--------------IKRIYYAICEG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI+AP+G+ V+ K + VV N + AVT ++V++ YT++KL
Sbjct: 171 VLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE-RFDKYTFIKLR 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+RVH + + G P++GD YG + Q + K LHF
Sbjct: 222 LKTGRTHQIRVHMSYI-GYPLLGDSSYGRAKNEFGVQGQVLHAGEIEFVHPITSKVLHFS 280
Query: 209 LDL 211
DL
Sbjct: 281 ADL 283
>gi|406992112|gb|EKE11519.1| hypothetical protein ACD_15C00066G0014 [uncultured bacterium]
Length = 315
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 20/147 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SGI+V+ + + KTF K+ N R +++ Y ALV G
Sbjct: 137 PGIVHRLDKDTSGIMVVAKNK------------KTFYELKKKFAN--REIRKNYVALVYG 182
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G + P+ + + K +I + A+ AVT Y +I+ + ++++
Sbjct: 183 NLKDRQGTVDKPIARAA--SFKKQKIAEGRTKGV--ARTAVTEYNLIE-RYEEFDFVEVF 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
P TGR HQ+RVH A LG PIVGD KY
Sbjct: 238 PKTGRMHQIRVHLAS-LGNPIVGDMKY 263
>gi|325579066|ref|ZP_08149022.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parainfluenzae ATCC 33392]
gi|325159301|gb|EGC71435.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parainfluenzae ATCC 33392]
Length = 326
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 26/186 (13%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHRLDRD+SGIL++ + +++ LH
Sbjct: 116 IAVHGGSGLNFGVIEALRALRPEARFLE---LVHRLDRDTSGILLVAKKRSTLRNLHEQL 172
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +Q+ Y ALV G + V+ APL K + +G +RI V+
Sbjct: 173 RVKT--------------VQKDYLALVRGQWQSHVKVVQAPLLKNELASG--ERIVKVSE 216
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ + TR+ I+ T +K SP+TGR HQ+RVH + G PI D KYG +
Sbjct: 217 ----QGKPSETRF-AIEERYQNATLVKASPVTGRTHQIRVHT-QYAGHPIALDDKYGDKE 270
Query: 180 HRKWKQ 185
K+ Q
Sbjct: 271 FDKYMQ 276
>gi|303249693|ref|ZP_07335898.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651505|gb|EFL81656.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 321
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 142 LVHRIDRDTSGILLVAKKRSALRSLHEQLREK--------------VVQKDYLALVRGQW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + + TR+ I+ T +K SP+
Sbjct: 188 QAHTKVIKAPLLKNELASG--ERIVRVSEE----GKPSETRFS-IEERYANATLVKASPV 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 241 TGRTHQIRVHT-QYAGHPIALDDKYG 265
>gi|312793558|ref|YP_004026481.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180698|gb|ADQ40868.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 300
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+L++ +T + L + ++R Y+A+ G
Sbjct: 125 PGIVHRLDKDTSGLLIVAKTDEAHIKLSEALKSHQ--------------IKRIYYAICEG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ GVI+AP+G+ V+ K + VV N + AVT ++V++ YT++KL
Sbjct: 171 VLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE-RFDKYTFIKLR 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+RVH + + G P++GD YG + Q + K LHF
Sbjct: 222 LKTGRTHQIRVHMSYI-GYPLLGDSSYGRAKNEFGVQGQVLHAGEIEFVHPITSKVLHFS 280
Query: 209 LDL 211
DL
Sbjct: 281 ADL 283
>gi|300727412|ref|ZP_07060821.1| ribosomal large chain pseudouridine synthase A [Prevotella bryantii
B14]
gi|299775292|gb|EFI71891.1| ribosomal large chain pseudouridine synthase A [Prevotella bryantii
B14]
Length = 531
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 36/192 (18%)
Query: 6 GIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFS 65
G IR S+ L+ Y + P +VHRLD +SG+LV+ + + L F E T
Sbjct: 355 GKNIRESV--LSILKERYPKATGPMIVHRLDMATSGLLVVTKNLEAYINLQKQFAEHT-- 410
Query: 66 ASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSA 125
+++ Y AL+ P S G++ PL ++D + ++ N
Sbjct: 411 ------------IKKRYVALLEHIPDQSIGIVDLPLLPDIMDRPRQ-KVDKKN------G 451
Query: 126 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYG-----WQ 178
+ A+T+YQVI WL PLTGR HQLR+HCA E L PI+GD YG
Sbjct: 452 KKAITKYQVI---AQNRVWL--YPLTGRTHQLRMHCAHEEGLNNPILGDNLYGKPADRLY 506
Query: 179 THRKWKQF-HPS 189
H ++ +F HPS
Sbjct: 507 LHAEYLEFTHPS 518
>gi|385823357|ref|YP_005859699.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|418005172|ref|ZP_12645168.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
gi|327385684|gb|AEA57158.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|410547425|gb|EKQ21658.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
Length = 306
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVHG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFEH-YTFIKCI 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|291614218|ref|YP_003524375.1| pseudouridine synthase, RluA family [Sideroxydans lithotrophicus
ES-1]
gi|291584330|gb|ADE11988.1| pseudouridine synthase, RluA family [Sideroxydans lithotrophicus
ES-1]
Length = 312
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDR++SG+L++ + +++ T LH I RE +++KR Y+ALV+G
Sbjct: 133 LVHRLDRETSGVLLVAKKRSALTGLHEIMRE---------GNSDKR-----YFALVLGQW 178
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ +K + PL K G+ R+ V + Q A H + Q P +T L+
Sbjct: 179 KNAKQHVKLPLHKFDTPQGEK-RVMVREDGQ---ASHTIFTLQQSWPE---FTLLEAQLK 231
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + LG PI GD KYG
Sbjct: 232 TGRTHQIRVHLSH-LGFPIAGDDKYG 256
>gi|349686308|ref|ZP_08897450.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter oboediens 174Bp2]
Length = 252
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 29/181 (16%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMG-RTQTSATVLHSIF 59
+PV G G +S+++ + P L HRLDRD+SG LV+ R Q V
Sbjct: 37 LPVHPGRGGGQSVEDWFPALSRHRNG--PWLAHRLDRDTSGCLVVALRKQALVAV----- 89
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ +A K ++ YWA+V G P ++GVI PL + V++ + R+ V
Sbjct: 90 -QACLAAGKA---------RKTYWAIVQGAPDAAQGVIDVPLAR--VEHDRQWRMQPVKT 137
Query: 120 DQIMSAQHAVTRYQVIKPSCHG----YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
Q A TR++V+ G +WL+L TGR HQ R HCA + G PI GD +Y
Sbjct: 138 ----GGQPARTRWRVLGTGHDGAGQPISWLELVLETGRTHQARAHCAAI-GCPIRGDTRY 192
Query: 176 G 176
G
Sbjct: 193 G 193
>gi|289522930|ref|ZP_06439784.1| ribosomal large subunit pseudouridine synthase D [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503954|gb|EFD25118.1| ribosomal large subunit pseudouridine synthase D [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 299
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 31/170 (18%)
Query: 21 LTYDYSE-------PPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 73
L Y Y E P +VHRLD +SG++V+ R FS K +
Sbjct: 109 LVYRYPELADSDMRRPGIVHRLDAGTSGLMVIARN--------------LFSKQKLTDAF 154
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
+ R +++ Y ALV G+P KG I++P+G+ + K + VV+ + AVT Y+
Sbjct: 155 KARSVKKEYLALVYGSPNKEKGTIASPIGRHPKNRLK---MAVVSG-----GREAVTEYE 206
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 183
V+ S +++L+ + TGR HQ+RVH + +G PIVGD YG +W
Sbjct: 207 VLW-SNDKFSFLRCTIHTGRTHQIRVHLKD-MGCPIVGDRLYGCNLKAEW 254
>gi|191638454|ref|YP_001987620.1| pseudouridine synthase [Lactobacillus casei BL23]
gi|385820159|ref|YP_005856546.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|409997315|ref|YP_006751716.1| RNA pseudouridine synthase YlyB [Lactobacillus casei W56]
gi|190712756|emb|CAQ66762.1| Pseudouridine synthase [Lactobacillus casei BL23]
gi|327382486|gb|AEA53962.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|406358327|emb|CCK22597.1| Uncharacterized RNA pseudouridine synthase YlyB [Lactobacillus
casei W56]
Length = 307
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 128 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVHG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 174 TFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFEH-YTFIKCI 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 225 LETGRTHQIRVHMAYI-HHPVAGDPLYG 251
>gi|116494944|ref|YP_806678.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
ATCC 334]
gi|227535056|ref|ZP_03965105.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|301066507|ref|YP_003788530.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus casei str.
Zhang]
gi|417986821|ref|ZP_12627386.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|417999198|ref|ZP_12639410.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|418002143|ref|ZP_12642267.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|418010905|ref|ZP_12650676.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
gi|116105094|gb|ABJ70236.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei ATCC 334]
gi|227187271|gb|EEI67338.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|300438914|gb|ADK18680.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
str. Zhang]
gi|410524555|gb|EKP99463.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|410539748|gb|EKQ14273.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|410544826|gb|EKQ19140.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|410553484|gb|EKQ27487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
Length = 306
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ +T+ + L + + KT R Y ALV G
Sbjct: 127 PGIVHRIDKDTSGLLMVAKTEKAQLSLSAQLKAKTSI--------------REYLALVHG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T + +G I APLG+ D R VV + +HAVT +QV++ H YT++K
Sbjct: 173 TFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFEH-YTFIKCI 223
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + P+ GD YG
Sbjct: 224 LETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|424883104|ref|ZP_18306736.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519467|gb|EIW44199.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 341
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 21/154 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G++V+ + + L F + + L+R Y A+V G
Sbjct: 142 PGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMP----------LERAYQAIVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-----KPSCHGYT 143
PR G++ APLG+ D + V A A+T YQVI KP +
Sbjct: 192 RPRSLSGMVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVIERFHEKPDATAFA 247
Query: 144 WLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 176
L L TGR HQ+RVH A + G P++GD YG
Sbjct: 248 SLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|423199887|ref|ZP_17186467.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AER39]
gi|404621499|gb|EKB18386.1| ribosomal large subunit pseudouridine synthase C [Aeromonas veronii
AER39]
Length = 327
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ + E L A + E LVHRLDRD+SG+L++ + +++ LH
Sbjct: 123 MAVHGGSGLSFGVIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQL 179
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +++ Y ALV G + V++APL K + +G +R+ V+
Sbjct: 180 RVKT--------------MRKQYLALVRGKWQVHVKVVNAPLRKNDLQSG--ERVVRVSA 223
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + TR+++++ T ++ SP+TGR HQ+RVH G PI D KYG
Sbjct: 224 D----GKPSETRFRIVRQFAEA-TLVECSPITGRTHQIRVHTLHA-GHPIACDDKYG 274
>gi|33151828|ref|NP_873181.1| 23S rRNA pseudouridylate synthase C [Haemophilus ducreyi 35000HP]
gi|34395752|sp|P59835.1|RLUC_HAEDU RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|33148049|gb|AAP95570.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
ducreyi 35000HP]
Length = 320
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 142 LVHRIDRDTSGILLVAKKRSALRALHEQLREK--------------VVQKDYLALVRGQW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + TR+ I+ T +K SP+
Sbjct: 188 QAHINVIKAPLLKNELQSG--ERIVKVSE----QGKPSETRFS-IEERYPNATLIKASPI 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVH + G PI D +YG Q
Sbjct: 241 TGRTHQIRVHT-QYAGHPIACDDRYGDQA 268
>gi|407474149|ref|YP_006788549.1| RluA family pseudouridine synthase [Clostridium acidurici 9a]
gi|407050657|gb|AFS78702.1| pseudouridine synthase, RluA family [Clostridium acidurici 9a]
Length = 302
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 23/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L +E + + R Y+ALV G
Sbjct: 130 PGIVHRIDKDTSGLLMIAKNNFAHEDLAQQLKEHSTT--------------RKYYALVEG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G I+AP+G+ +D K +TV + + ++ A+T ++V++ YT ++
Sbjct: 176 NIKEDSGTINAPIGRHPIDRKK---MTVTDKN----SKEAITHFKVLE-RFEKYTLIEAQ 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A + P+VGD YG++ +
Sbjct: 228 LETGRTHQIRVHMA-FINHPVVGDPVYGYKNQK 259
>gi|444915216|ref|ZP_21235352.1| Ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
gi|444713798|gb|ELW54690.1| Ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
Length = 310
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G LV+ + +T+ L F+ +T +++ Y ALV G
Sbjct: 129 PGIVHRLDKDTTGCLVVAKHETALVALQKSFKTRT--------------VEKTYLALVHG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+P+ ++G I G+ V R T ++ + A+T Y+V++ S G +++
Sbjct: 175 SPKAAEGRIETLYGRHPVHR---QRFT----GKVKEGKPALTVYRVLE-SFEGAALVEVD 226
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ+RVH AE LG P++GD YG
Sbjct: 227 LLTGRTHQIRVHLAE-LGHPLLGDTLYG 253
>gi|345429650|ref|YP_004822768.1| 23S rRNA pseudouridylate synthase [Haemophilus parainfluenzae T3T1]
gi|301155711|emb|CBW15179.1| 23S rRNA pseudouridylate synthase [Haemophilus parainfluenzae T3T1]
Length = 326
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 26/186 (13%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHRLDRD+SGIL++ + +++ LH
Sbjct: 116 IAVHGGSGLNFGVIEALRALRPEARFLE---LVHRLDRDTSGILLVAKKRSALRNLHEQL 172
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +Q+ Y ALV G + V+ APL K + +G +RI V+
Sbjct: 173 RVKT--------------VQKDYLALVRGQWQSHVKVVQAPLLKNELASG--ERIVKVSE 216
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
+ + TR+ I+ T +K SP+TGR HQ+RVH + G PI D KYG +
Sbjct: 217 ----QGKPSETRFS-IEERYQNATLVKASPVTGRTHQIRVHT-QYAGHPIALDDKYGDKE 270
Query: 180 HRKWKQ 185
K+ Q
Sbjct: 271 FDKYMQ 276
>gi|357041028|ref|ZP_09102810.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
gi|355355887|gb|EHG03690.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
Length = 312
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L +E T ++R Y ALV G
Sbjct: 132 PGIVHRIDKDTSGLLMVAKNDLAHEHLAGQLKEHT--------------VRRGYLALVHG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
GV+ AP+G+ + ++ V N + + AVT Y+V+ + + YT L+L
Sbjct: 178 VLTSDLGVVDAPIGR---HPRERQKMAVTNRN----GKAAVTHYRVLNRAGN-YTLLQLR 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A + G P+VGD KYG
Sbjct: 230 LETGRTHQIRVHMAYI-GYPLVGDTKYG 256
>gi|399926869|ref|ZP_10784227.1| 23S RNA-specific pseudouridylate synthase [Myroides injenensis
M09-0166]
Length = 560
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 88/180 (48%), Gaps = 26/180 (14%)
Query: 6 GIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFS 65
GI I+ S+ E L Y + P +VHRLD +SGIL++ + + S L S F +KT
Sbjct: 380 GIFIQDSVYERMK--LRYPNATGPLIVHRLDMATSGILIIAKDKDSHKALQSQFIKKTV- 436
Query: 66 ASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSA 125
EKR Y AL+ G G I PL VD R V +
Sbjct: 437 --------EKR-----YVALLDGNISEENGYIDLPLR---VDLEDRPRQMVCYD----YG 476
Query: 126 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 183
+ A T+++V+K G T + P+TGR HQLRVH + LG TPIVGD YG ++ R +
Sbjct: 477 KPAKTKWEVVK-RTDGKTKVYFYPITGRTHQLRVHASHALGLNTPIVGDDLYGTKSDRLY 535
>gi|254361221|ref|ZP_04977365.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|452745187|ref|ZP_21945024.1| 23S rRNA pseudouridylate synthase C [Mannheimia haemolytica
serotype 6 str. H23]
gi|153092712|gb|EDN73761.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|452086797|gb|EME03183.1| 23S rRNA pseudouridylate synthase C [Mannheimia haemolytica
serotype 6 str. H23]
Length = 320
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 142 LVHRIDRDTSGILLVAKKRSALRSLHEQLREK--------------VVQKDYLALVRGQW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + + TR+ I+ T +K SP+
Sbjct: 188 QAHTKVIKAPLLKNELASG--ERIVRVSEE----GKPSETRFS-IEERYANATLVKASPI 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 241 TGRTHQIRVHT-QYAGHPIALDDKYG 265
>gi|260912693|ref|ZP_05919179.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
dagmatis ATCC 43325]
gi|260633071|gb|EEX51236.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
dagmatis ATCC 43325]
Length = 381
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHRLDRD+SGIL++ + +++ LH
Sbjct: 177 IAVHGGSGLNFGVIEALRALRPEARFLE---LVHRLDRDTSGILLVAKKRSALRNLHEQL 233
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
REKT +Q+ Y ALV G + V+ APL K + +G +RI V+
Sbjct: 234 REKT--------------VQKDYLALVRGQWQSHCKVVKAPLLKNELSSG--ERIVRVSE 277
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+ I+ T +K SP+TGR HQ+RVH + G PI D KYG
Sbjct: 278 ----QGKPSETRFS-IEERYENATLVKASPVTGRTHQIRVHT-QYAGHPIAFDDKYG 328
>gi|334122475|ref|ZP_08496513.1| ribosomal large subunit pseudouridine synthase C [Enterobacter
hormaechei ATCC 49162]
gi|419957492|ref|ZP_14473558.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae GS1]
gi|333392082|gb|EGK63189.1| ribosomal large subunit pseudouridine synthase C [Enterobacter
hormaechei ATCC 49162]
gi|388607650|gb|EIM36854.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae GS1]
Length = 315
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKV-EERYEFATLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QFAGHPIAFDDRYG 262
>gi|124024488|ref|YP_001018795.1| pseudouridylate synthase [Prochlorococcus marinus str. MIT 9303]
gi|123964774|gb|ABM79530.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9303]
Length = 324
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ ++Q + K +KRI R Y A+V G
Sbjct: 145 PGIVHRLDKDTTGCIVIAKSQEALV--------------KLQQQIQKRIASRNYLAVVHG 190
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P +G I A +G+ VD K VV D +HA T + +++ Y+ L+
Sbjct: 191 APTGDQGTIVAAIGRHPVDRKK---YAVVTED---GGRHACTHWTLVE-RLGDYSLLRFQ 243
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVHCA + G PIVGD Y
Sbjct: 244 LDTGRTHQIRVHCAHI-GHPIVGDPIY 269
>gi|322515396|ref|ZP_08068389.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
ureae ATCC 25976]
gi|322118578|gb|EFX90808.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
ureae ATCC 25976]
Length = 356
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 177 LVHRIDRDTSGILLVAKKRSALRNLHEQLREK--------------VVQKDYLALVRGQW 222
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + +S TR+ I+ T +K SP+
Sbjct: 223 QSHVKVIRAPLLKNELASG--ERIVKVSEEGKLSE----TRF-AIEERYANATLVKASPV 275
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 276 TGRTHQIRVHT-QYAGHPIALDDKYG 300
>gi|401763195|ref|YP_006578202.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174729|gb|AFP69578.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 315
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKV-EERYEFATLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QFAGHPIAFDDRYG 262
>gi|148259875|ref|YP_001234002.1| pseudouridine synthase [Acidiphilium cryptum JF-5]
gi|146401556|gb|ABQ30083.1| pseudouridine synthase [Acidiphilium cryptum JF-5]
Length = 224
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 72/151 (47%), Gaps = 23/151 (15%)
Query: 26 SEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWAL 85
++ P LVHRLD D++G L + R +T+ L F ++ + YWA+
Sbjct: 45 ADGPWLVHRLDADTAGCLAIARRKTTLVALQRAFAQRRVGKT--------------YWAI 90
Query: 86 VVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWL 145
V G P + G I L + V G V D A+T ++ + + G L
Sbjct: 91 VEGVPAAAHGTIELALARRTVPGGWR-----VAPDP--RGDPAITDWRCLA-AGQGRALL 142
Query: 146 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+L P TGR HQLRVHCAE G PIVGD YG
Sbjct: 143 ELRPRTGRTHQLRVHCAES-GFPIVGDPLYG 172
>gi|71892188|ref|YP_277920.1| ribosomal large subunit (23S) pseudouridine synthase C [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|71796294|gb|AAZ41045.1| ribosomal large subunit (23S) pseudouridine synthase C [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 338
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 90/159 (56%), Gaps = 24/159 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDR++SG+L++ + +T+ LH R + +++ Y ALV G
Sbjct: 138 LVHRLDRETSGVLLVAKRRTALVYLHEQLRLQN--------------MKKEYLALVHGRW 183
Query: 91 RCSKGVISAPLGK--VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ ++S PL K +++ S R+ ++++ + + + T +Q+ + + T+L +
Sbjct: 184 NVNLQIVSVPLFKKNTLLN---SSRVVYIDSE---NGKFSTTHFQIKEYFDNVATFLAIK 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 186
P+TGR HQ+RVH + PIVGD +YG +Q++ ++K+F
Sbjct: 238 PITGRTHQIRVHT-QYASHPIVGDNRYGDYQSNTRFKRF 275
>gi|227111672|ref|ZP_03825328.1| 23S rRNA pseudouridylate synthase C [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 318
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN+D + + TR+++ + H T ++ SP+
Sbjct: 185 QSHCKVVQAPLLKNILQSG--ERIVRVNSD----GKPSETRFKIEERFEHA-TLVRASPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A+ G PI D +YG
Sbjct: 238 TGRTHQIRVH-AQHAGHPIAFDDRYG 262
>gi|89900510|ref|YP_522981.1| pseudouridine synthase RluD [Rhodoferax ferrireducens T118]
gi|89345247|gb|ABD69450.1| Pseudouridine synthase, RluD [Rhodoferax ferrireducens T118]
Length = 346
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 27/194 (13%)
Query: 3 VQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ I++L + E LVHRLDRD+SGIL++ + +++ T L S FRE
Sbjct: 125 VHGGSGVSFGVIEQLRMARPEAKFLE---LVHRLDRDTSGILLIAKKRSALTRLQSQFRE 181
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN-----GKSD-RIT 115
R + Y ALV G ++ V+ PL K ++ G+ + R+
Sbjct: 182 --------------RETGKTYLALVAGHWPANRKVLDKPLYKYLLPGKDGSAGEGERRVK 227
Query: 116 VVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
VV+ D + +VT +V + + +T L+++ TGR HQ+RVH A G PI GD KY
Sbjct: 228 VVSRDD-PNGMPSVTLVKVRETTATSFTLLEVTIKTGRTHQIRVHLASE-GYPIAGDDKY 285
Query: 176 G-WQTHRKWKQFHP 188
G + ++K Q P
Sbjct: 286 GDFGLNKKLLQSGP 299
>gi|89073417|ref|ZP_01159941.1| putative 23S rRNA ribosomal pseudouridine synthase [Photobacterium
sp. SKA34]
gi|89050904|gb|EAR56378.1| putative 23S rRNA ribosomal pseudouridine synthase [Photobacterium
sp. SKA34]
Length = 314
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L FR
Sbjct: 114 VHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSGILLVAKKRSALRQLQEQFRN 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + + ++APL K V++ I VN
Sbjct: 171 KT--------------VQKYYFALVMGEWKANCRKVTAPLLKNEVNS-----IVRVNP-- 209
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVHC + G PI D +YG
Sbjct: 210 --QGKASDTRFKVLERFPLA-TLVQASPVTGRTHQIRVHC-QYEGHPIAWDDRYG 260
>gi|451812321|ref|YP_007448775.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778223|gb|AGF49171.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 307
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG GI + E Y + LVHRLDRD+SG+LV+ + +++ +HS+ R
Sbjct: 100 VAVHGGSGISFGVIEQVREF--YKNNNFLELVHRLDRDTSGLLVIAKKRSALLAMHSMLR 157
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ R++ + Y ALV G + I L K + +G+ R+ V N
Sbjct: 158 D--------------RLIYKKYIALVNGRWLNKRQHIKFCLSKWLTKSGER-RVRVDPN- 201
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Q A T +IK Y+ +++ +GR HQ+RVH + V G PIVGD KYG
Sbjct: 202 ----GQEAHTAVNLIKNYGDSYSLVEVDLYSGRTHQIRVHLSSV-GFPIVGDTKYG 252
>gi|384209503|ref|YP_005595223.1| Pseudouridine synthase, RsuA/RluD family [Brachyspira intermedia
PWS/A]
gi|343387153|gb|AEM22643.1| Pseudouridine synthase, RsuA/RluD family [Brachyspira intermedia
PWS/A]
Length = 217
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 8 GIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSAS 67
GI + + A Y Y + LVHR+D+ +SGI+++ R + + F+ KT
Sbjct: 18 GIEVDNNLINAIKKEYTYIDNLYLVHRIDKFTSGIVILARDEETKKYFEESFKNKT---- 73
Query: 68 KEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 127
+ + Y A+V G KG I +G +D +R ++ + +
Sbjct: 74 ----------INKVYHAIVQGKVEKEKGTIDISIG---IDKKNPNRRIPLSVKE--GGES 118
Query: 128 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 175
A+T Y+V+K + +T L+L PLTGR HQ+RVH + +G PI+GD Y
Sbjct: 119 AITHYKVLK-RLNEHTLLELKPLTGRTHQIRVHLS-YIGHPIIGDKIY 164
>gi|333998603|ref|YP_004531215.1| ribosomal large subunit pseudouridine synthase C [Treponema
primitia ZAS-2]
gi|333738829|gb|AEF84319.1| ribosomal large subunit pseudouridine synthase C [Treponema
primitia ZAS-2]
Length = 236
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 39/189 (20%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG G+ S+D L A ++S P LVHRLD+D+SG++++ +++ +A + IF
Sbjct: 44 LAVQGGEGVGVSLDSLLAA----EFSPRPLLVHRLDKDTSGLILVAKSKEAAALFSGIFA 99
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
+ + Y A+ G P+ G I L
Sbjct: 100 RSV-----------PGTVLKLYLAVCSGCPKPESGTIETDL------------------- 129
Query: 121 QIMSA-QHAVTRYQVIKPSCH--GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG- 176
+I A + A T Y+ I H ++ L+L TGR HQ+R H A + G PI+GD KYG
Sbjct: 130 EIRGASRKAKTTYRCINGDSHLLDFSLLELELGTGRMHQIRRHLASI-GNPILGDDKYGD 188
Query: 177 WQTHRKWKQ 185
+ ++K ++
Sbjct: 189 FPLNKKLRK 197
>gi|332535383|ref|ZP_08411176.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
haloplanktis ANT/505]
gi|359453509|ref|ZP_09242820.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20495]
gi|414068909|ref|ZP_11404906.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
sp. Bsw20308]
gi|332035211|gb|EGI71720.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
haloplanktis ANT/505]
gi|358049325|dbj|GAA79069.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20495]
gi|410808748|gb|EKS14717.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
sp. Bsw20308]
Length = 319
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 23/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E + S LVHRLDRD+SG L++ + ++ T LH R
Sbjct: 111 MAVHGGSGLSYGLIEALRALRPEERS--LELVHRLDRDTSGCLLIAKRRSVLTALHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G ++ L K + +G +R+ V+N
Sbjct: 169 EKT--------------MEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG--ERVVRVDNT 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + + TR++V++ + + ++ SP+TGR HQ+RVH + G PI D KYG Q
Sbjct: 213 E---GKPSHTRFKVLE-RFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYGDQ 265
>gi|429462649|ref|YP_007184112.1| 23S rRNA pseudouridine955/2504/2580 synthase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|429338163|gb|AFZ82586.1| 23S rRNA pseudouridine955/2504/2580 synthase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
Length = 304
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG GI + E C Y LVHRLDRD+SG+L++ + ++ H +FR
Sbjct: 98 IAVHGGSGILFGVIEQLRAC--YKKGTFLELVHRLDRDTSGLLIVAKKRSCLLEFHKMFR 155
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E + + Y ALV G + I PL K V +G +R VV+ +
Sbjct: 156 ES--------------LCHKKYIALVKGKWLNKRQHIKLPLKKYVTKSG--ERRVVVSPE 199
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
Q+A T +I+ Y+ L + L+GR HQ+RVH + G PI+GD KYG + +
Sbjct: 200 ----GQYAHTIVDLIR-HYGDYSLLNVEILSGRTHQIRVHLSHS-GFPIIGDSKYGSKEY 253
Query: 181 RKW 183
+
Sbjct: 254 DSF 256
>gi|116253506|ref|YP_769344.1| ribosomal large subunit pseudouridine synthase D [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258154|emb|CAK09255.1| putative ribosomal large subunit pseudouridine synthase D
[Rhizobium leguminosarum bv. viciae 3841]
Length = 341
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 21/154 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G++V+ + + L F + + L+R Y A+V G
Sbjct: 142 PGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMP----------LERAYQAIVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-----KPSCHGYT 143
PR G + APLG+ D + V A A+T YQVI KP +
Sbjct: 192 RPRTLSGTVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVIERFHEKPDATAFA 247
Query: 144 WLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 176
L L TGR HQ+RVH A + G P++GD YG
Sbjct: 248 SLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|449471578|ref|XP_004153349.1| PREDICTED: ribosomal large subunit pseudouridine synthase C-like
[Cucumis sativus]
Length = 306
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 130 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 175
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + T ++ SP+
Sbjct: 176 QSHVKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKV-EERYEFATLVRCSPV 228
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 229 TGRTHQIRVHT-QFAGHPIAFDDRYG 253
>gi|359442985|ref|ZP_09232840.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20429]
gi|358035193|dbj|GAA69089.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20429]
Length = 319
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 23/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E + S LVHRLDRD+SG L++ + ++ T LH R
Sbjct: 111 MAVHGGSGLSYGLIEALRALRPEERS--LELVHRLDRDTSGCLLIAKRRSVLTALHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G ++ L K + +G +R+ V+N
Sbjct: 169 EKT--------------MEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG--ERVVRVDNT 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + + TR++V++ + + ++ SP+TGR HQ+RVH + G PI D KYG Q
Sbjct: 213 E---GKPSHTRFKVLE-RFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYGDQ 265
>gi|392534508|ref|ZP_10281645.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas arctica A
37-1-2]
Length = 319
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 23/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E + S LVHRLDRD+SG L++ + ++ T LH R
Sbjct: 111 MAVHGGSGLSYGLIEALRALRPEERS--LELVHRLDRDTSGCLLIAKRRSVLTALHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G ++ L K + +G +R+ V+N
Sbjct: 169 EKT--------------MEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG--ERVVRVDNT 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + + TR++V++ + + ++ SP+TGR HQ+RVH + G PI D KYG Q
Sbjct: 213 E---GKPSHTRFKVLE-RFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYGDQ 265
>gi|424872040|ref|ZP_18295702.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167741|gb|EJC67788.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 341
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 21/154 (13%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G++V+ + + L F + + L+R Y A+V G
Sbjct: 142 PGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMP----------LERAYQAIVWG 191
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-----KPSCHGYT 143
PR G + APLG+ D + V A A+T YQVI KP +
Sbjct: 192 RPRTLSGTVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVIERFHEKPDATAFA 247
Query: 144 WLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 176
L L TGR HQ+RVH A + G P++GD YG
Sbjct: 248 SLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|426405639|ref|YP_007024610.1| pseudouridylate synthase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862307|gb|AFY03343.1| pseudouridylate synthase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 335
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 23/157 (14%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHRLD+++SGI+V+ + + L + F+E++ R Y+A+
Sbjct: 134 ERPGIVHRLDKETSGIIVVAKNDKAHESLTAQFKERS--------------THRIYYAVC 179
Query: 87 VGTPRCSKGVISAPLGKVVVDNGK------SDRITVVN-NDQIMSAQHAVTRYQVIKPSC 139
+GT R G + + L + VD + DR + + ND + AVT ++V++
Sbjct: 180 LGTARTLSGSVRSFLARHPVDRKRYASVLGDDRKPLTDPNDDPGMGKWAVTHFEVLQRKS 239
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G +++KL TGR HQ+RVH +E G PI GD YG
Sbjct: 240 -GMSYMKLKLETGRTHQIRVHMSES-GLPIAGDNLYG 274
>gi|421277207|ref|ZP_15728027.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|395876488|gb|EJG87564.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 297
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDEAHMALAQELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GVI AP+G+ D K +T + AVTR+QV++ Y+ L+L
Sbjct: 171 NLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFQVLE-RFGDYSLLELQ 221
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A +G P+ GD YG
Sbjct: 222 LETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|315640856|ref|ZP_07895955.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
italicus DSM 15952]
gi|315483395|gb|EFU73892.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
italicus DSM 15952]
Length = 302
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 24/150 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++KT R Y ALV G
Sbjct: 130 PGIVHRIDKDTSGLLMVAKNDQAHEDLAKQLKDKTSL--------------RKYVALVHG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
KGVI AP+G+ VD VV+N + AVT +QV++ YT ++L
Sbjct: 176 VIPHDKGVIRAPIGRSTVDRKMQ---AVVDN-----GKDAVTHFQVLE-RYEDYTLVELQ 226
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH + +G P+VGD YG +
Sbjct: 227 LETGRTHQIRVHM-QYIGYPLVGDPVYGLK 255
>gi|323343472|ref|ZP_08083699.1| ribosomal large subunit pseudouridine synthase A [Prevotella oralis
ATCC 33269]
gi|323095291|gb|EFZ37865.1| ribosomal large subunit pseudouridine synthase A [Prevotella oralis
ATCC 33269]
Length = 573
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
+ Y S P +VHRLD +SG+L++ +T+ + +L F E T +++
Sbjct: 402 MRYPDSNSPLIVHRLDMATSGLLIIAKTKNAHRILQRQFAEHT--------------IRK 447
Query: 81 WYWALVVGTP-RC---SKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVTRYQ 133
Y A++ G P C S G+IS PL + D + Q++ +H AVT Y+
Sbjct: 448 QYIAVLDGVPDSCRWPSAGIISLPLRPDLADRPR----------QLVDFEHGKEAVTEYK 497
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 183
+++ + T + L P TGR HQLR+HCA G PI GD YG ++ R +
Sbjct: 498 ILR-TAGEETRIALFPHTGRTHQLRIHCAHPYGLNCPIKGDNLYGTRSQRLY 548
>gi|354722976|ref|ZP_09037191.1| 23S rRNA pseudouridylate synthase C [Enterobacter mori LMG 25706]
Length = 315
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKV-EERYEFATLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QFAGHPIAFDDRYG 262
>gi|315634769|ref|ZP_07890051.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
segnis ATCC 33393]
gi|315476321|gb|EFU67071.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
segnis ATCC 33393]
Length = 349
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SGIL++ + +++ LH REKT +Q+ Y ALV G
Sbjct: 171 LVHRLDRDTSGILLVAKKRSALRHLHEQLREKT--------------IQKEYLALVRGQW 216
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K + +G +RI V+ + + TR+ V + + T +K SP+
Sbjct: 217 QSHCKVVQAPLLKNELSSG--ERIVKVSE----QGKPSETRFSVEERYVNA-TLVKASPV 269
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 270 TGRTHQIRVHT-QYAGHPIALDSKYG 294
>gi|15672980|ref|NP_267154.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis Il1403]
gi|281491492|ref|YP_003353472.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|385830534|ref|YP_005868347.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|418038114|ref|ZP_12676463.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723945|gb|AAK05096.1|AE006334_2 pseudouridine synthase [Lactococcus lactis subsp. lactis Il1403]
gi|281375210|gb|ADA64723.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|326406542|gb|ADZ63613.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|354693792|gb|EHE93525.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374673048|dbj|BAL50939.1| pseudouridine synthase [Lactococcus lactis subsp. lactis IO-1]
Length = 301
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 27/169 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L + ++KT +R Y A+V G
Sbjct: 128 PGIVHRIDKDTSGLLMIAKNDKAHESLAAQLKDKTS--------------KRRYLAIVHG 173
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
KG I AP+G+ + D K ++ + AVT ++V++ +GYT + L
Sbjct: 174 EIANDKGTIEAPIGRNLKDRKKQAVVS--------GGKPAVTHFEVLE-RFYGYTLIALR 224
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ---THRKWKQFHPSDLSKD 194
TGR HQ+RVH +G P+ GD YG T K + H L D
Sbjct: 225 LETGRTHQIRVHM-NYIGHPVAGDPLYGPNKTLTPNKGQFLHAETLGFD 272
>gi|392538263|ref|ZP_10285400.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas marina
mano4]
Length = 550
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD +SG+L++ + + + F E+T EKR Y ALV G
Sbjct: 391 PLIVHRLDMSTSGLLIIALNKRAHKAIQKQFIERTI---------EKR-----YVALVDG 436
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I PL D R V + A+T +QV++ + T L+L
Sbjct: 437 NIEQESGTIELPL---TPDFDDKPRQKVC----YQKGKPALTTWQVLE-RKNNTTRLQLY 488
Query: 149 PLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 181
P TGR HQLRVHCA VLG TPI+GD YG + R
Sbjct: 489 PKTGRTHQLRVHCAHVLGLNTPIIGDTHYGKKADR 523
>gi|375111674|ref|ZP_09757878.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
gi|374568310|gb|EHR39489.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
Length = 317
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G++ + E A L D ++ LVHRLDRD+SG L++ + ++ T LH R
Sbjct: 111 MAVHGGSGLQFGVIE-ALRALRPD-AKHLELVHRLDRDTSGCLLIAKKRSVLTHLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KT +++ YWALV G ++ PL K + +G+ VV D
Sbjct: 169 NKT--------------VEKKYWALVAGDWDNKVRKVTEPLRKNTLQSGER----VVKVD 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ G T ++ P+TGR HQ+RVH A G PI D KYG
Sbjct: 211 AV-EGKPSETRFRILQRYQEG-TLVEAFPVTGRTHQIRVHTA-CKGHPIACDDKYG 263
>gi|359436147|ref|ZP_09226266.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20311]
gi|359447558|ref|ZP_09237152.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20439]
gi|358029136|dbj|GAA62515.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20311]
gi|358038656|dbj|GAA73401.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20439]
Length = 555
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 6 GIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFS 65
GI I S+ T + ++ P +VHRLD +SG+L++ + L F E++
Sbjct: 375 GINIDDSVYMRIKT--QFPHASGPLIVHRLDMSTSGLLMIALNKRVHKALQKQFIERSV- 431
Query: 66 ASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSA 125
EKR Y ALV G G I PL V+D R V + +
Sbjct: 432 --------EKR-----YVALVAGNIAAESGSIELPL---VLDFDDKPRQMVCDK----TG 471
Query: 126 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 181
+ ++T +QV++ + T L+L P TGR HQLRVHCA LG TPIVGD YG + R
Sbjct: 472 KPSLTTWQVLERK-NNTTRLQLYPKTGRTHQLRVHCAHHLGLNTPIVGDTHYGKKAER 528
>gi|397170415|ref|ZP_10493831.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
gi|396088082|gb|EJI85676.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
Length = 317
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G++ + E A L D ++ LVHRLDRD+SG L++ + ++ T LH R
Sbjct: 111 MAVHGGSGLQFGVIE-ALRALRPD-AKHLELVHRLDRDTSGCLLIAKKRSVLTHLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
KT +++ YWALV G ++ PL K + +G+ VV D
Sbjct: 169 NKT--------------VEKKYWALVAGDWDNKVRKVTEPLRKNTLQSGER----VVKVD 210
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + + TR+++++ G T ++ P+TGR HQ+RVH A G PI D KYG
Sbjct: 211 AV-EGKPSETRFRILQRYQEG-TLVEAFPVTGRTHQIRVHTA-CKGHPIACDDKYG 263
>gi|261493033|ref|ZP_05989574.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496687|ref|ZP_05993066.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307656|gb|EEY08980.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311310|gb|EEY12472.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 320
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 142 LVHRIDRDTSGILLVAKKRSALRSLHEQLREK--------------VVQKDYLALVRGQW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + + TR+ I+ T +K SP+
Sbjct: 188 QAHTKVIKAPLLKNELASG--ERIVRVSEE----GKPSETRFS-IEERYANATLVKASPI 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D KYG
Sbjct: 241 TGRTHQIRVHT-QYAGHPIALDDKYG 265
>gi|359435638|ref|ZP_09225827.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20652]
gi|357917693|dbj|GAA62076.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20652]
Length = 319
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 23/178 (12%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V GG G+ + E + S LVHRLDRD+SG L++ + ++ T LH R
Sbjct: 111 MAVHGGSGLSYGLIEALRALRPEERS--LELVHRLDRDTSGCLLIAKRRSVLTALHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +++ YWALV G ++ L K + +G +R+ V+N
Sbjct: 169 EKT--------------MEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG--ERVVRVDNT 212
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
+ + + TR++V++ + + ++ SP+TGR HQ+RVH + G PI D KYG Q
Sbjct: 213 E---GKPSHTRFKVLE-RFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIACDDKYGDQ 265
>gi|393787131|ref|ZP_10375263.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
gi|392658366|gb|EIY51996.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
Length = 539
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 24/157 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD +SG+L++ +T+ + L + F+ +T +++ Y AL+ G
Sbjct: 380 PMIVHRLDMATSGVLLIAKTKETHQNLQAQFKNRT--------------VKKRYIALLDG 425
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+GV++ P+ +D + +VN + + A+T+YQV++ + T +
Sbjct: 426 IIAPDEGVLNLPICPDPLDRPRQ----IVNKE---YGKTAITKYQVLERN-ESQTRIAFY 477
Query: 149 PLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 183
PLTGR HQLRVH A LG PI GD YG Q R +
Sbjct: 478 PLTGRTHQLRVHAAHPLGLNCPITGDELYGKQADRLY 514
>gi|218961736|ref|YP_001741511.1| Pseudouridylate synthase, 23S RNA-specific [Candidatus Cloacamonas
acidaminovorans]
gi|167730393|emb|CAO81305.1| Pseudouridylate synthase, 23S RNA-specific [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 351
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 26/169 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDR +SG++++ + + L +F +R +++ Y+A+ G
Sbjct: 141 PGIVHRLDRGTSGLIIIAKNDLTHAKLSDMF--------------ARREIKKTYFAITTG 186
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P KG I L + + K+ R V N+ ++A+T Y+ IK + H + ++++
Sbjct: 187 IPEPEKGEIETYLAR----SNKNPRTICVTNE----GRYALTHYKTIK-TWHYFALVEIN 237
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 197
P TGR HQ+RVH A + PI+GD Y + R + P ++ K E
Sbjct: 238 PATGRMHQIRVHFAHI-RYPILGDLLYN--SRRYVQSLVPQNMKKKVTE 283
>gi|291542663|emb|CBL15773.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
bromii L2-63]
Length = 306
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 23/153 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + S L +E +F+ R Y ++V G
Sbjct: 130 PGIVHRIDKDTSGLLIVAKNDFSHRSLAEQIKEHSFT--------------REYESIVFG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G + AP+G+ D K + V+ + +++AVT Y VI GYT +K
Sbjct: 176 NLKNDEGTVDAPIGRNPKDRKK---MCVIEKN----SKNAVTHYSVI-TRYKGYTHIKCK 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 181
TGR HQ+RVH A +G P+ GD YG + +
Sbjct: 228 LETGRTHQIRVHMA-YIGHPVSGDKVYGVKNEK 259
>gi|451811595|ref|YP_007448050.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776753|gb|AGF47752.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 312
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 26/184 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG GI + E C Y LVHRLDRD+SG+L++ + ++ H +FR
Sbjct: 106 IAVHGGSGILFGVIEQLRAC--YKKGTFLELVHRLDRDTSGLLIVAKKRSCLLEFHKMFR 163
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
E + + Y ALV G + I PL K V +G +R VV+ +
Sbjct: 164 ES--------------LCHKKYIALVKGKWLNKRQHIKLPLKKYVTKSG--ERRVVVSPE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHG-YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
Q+A T +I+ +G Y+ L + L+GR HQ+RVH + G PI+GD KYG +
Sbjct: 208 ----GQYAHTIVDLIRH--YGDYSLLNVEILSGRTHQIRVHLSHS-GFPIIGDSKYGSKE 260
Query: 180 HRKW 183
+ +
Sbjct: 261 YDSF 264
>gi|366053143|ref|ZP_09450865.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
suebicus KCTC 3549]
Length = 305
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L + + KT NE R Y A+V G
Sbjct: 132 PGIVHRIDKDTSGLLMVAKNDQAHRFLAAQLKNKT---------NE-----REYVAIVHG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
SKG I AP+G+ +V+ K I +HAVT +QV+K H YT +
Sbjct: 178 QITESKGTIDAPIGRSIVNRQKQAIIA--------DGRHAVTHFQVLKRYQH-YTLVSCR 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + + P+ GD YG
Sbjct: 229 LETGRTHQIRVHM-QYIHHPLAGDPLYG 255
>gi|342217473|ref|ZP_08710117.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
gi|341594276|gb|EGS37076.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
Length = 305
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++V+ +T + L + T +R YW LV G
Sbjct: 131 PGIVHRLDKDTSGVMVVAKTDVAHRHLAEQIKAHT--------------AKRTYWTLVHG 176
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
T +G I AP+G+ DRI + N + + + A+T + V + YTW+
Sbjct: 177 TLAEMRGTIEAPIGR-----HPKDRIKMAVN--LKNGREAITHFTV-QERYRMYTWIACQ 228
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH A + G P+V D YG++
Sbjct: 229 LETGRTHQIRVHLAYI-GHPVVNDPVYGYK 257
>gi|50120723|ref|YP_049890.1| 23S rRNA pseudouridylate synthase C [Pectobacterium atrosepticum
SCRI1043]
gi|49611249|emb|CAG74695.1| ribosomal large subunit pseudouridine synthase C [Pectobacterium
atrosepticum SCRI1043]
Length = 318
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R K +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN++ + + TR+++ + H T ++ SP+
Sbjct: 185 QSHCKVVQAPLLKNILQSG--ERIVRVNSE----GKASETRFKIEERFEHA-TLVRASPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A+ G PI D +YG
Sbjct: 238 TGRTHQIRVH-AQYAGHPIAFDDRYG 262
>gi|365858930|ref|ZP_09398824.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
gi|363713362|gb|EHL96989.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
Length = 238
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 76/157 (48%), Gaps = 23/157 (14%)
Query: 21 LTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80
L + P+ HRLD D++G LV+GRT+ + L ++F E EK
Sbjct: 59 LAFGKKRIPQPAHRLDTDTAGCLVLGRTKPALAELGALFAE---------GRAEKT---- 105
Query: 81 WYWALVVGT-PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 139
YWA++ G P G I PL KV S + Q A+T ++V+
Sbjct: 106 -YWAVLRGPGPAEGTGRIDLPLRKV------STAAHGWRMETHPEGQPAITLWRVLG-RG 157
Query: 140 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
G W++L P TGR HQLRVHCA LG PI+GD YG
Sbjct: 158 PGLCWVELRPRTGRTHQLRVHCA-ALGFPILGDPFYG 193
>gi|430004492|emb|CCF20287.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Rhizobium sp.]
Length = 328
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 25/160 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG+LV + + L + F + + L+R Y A+V G
Sbjct: 129 PGIVHRLDKDTSGVLVAAKNDIAHRHLAAQFADHGRTGP----------LERAYQAVVWG 178
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRIT-VVNNDQIMSAQHAVTRYQVI-----KPSCHGY 142
P+ KG I APLG+ G DR V + A+ A+T Y+V+ KP
Sbjct: 179 RPKQLKGTIDAPLGR-----GGGDRTKRAVKREDSDDAREAITHYEVVERFHEKPDATAL 233
Query: 143 TWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKY--GWQT 179
L L TGR HQ+RVH A + G P++GD Y G++T
Sbjct: 234 ASLVECRLETGRTHQIRVHMAHI-GCPLIGDSDYSGGFRT 272
>gi|118361718|ref|XP_001014087.1| RNA pseudouridylate synthase family protein [Tetrahymena
thermophila]
gi|89295854|gb|EAR93842.1| RNA pseudouridylate synthase family protein [Tetrahymena
thermophila SB210]
Length = 881
Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 39/200 (19%)
Query: 4 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 63
QGG + ++ + L ++ + HRLD+ +SG+L++ + Q A + ++F
Sbjct: 108 QGGQDVSLNLVTMGQQYLINQTNQKYLVAHRLDKVTSGVLMVPKNQQIAKIYGNLF---- 163
Query: 64 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM 123
N+K + ++Y ALV +P+ K +I+AP ++ +S + +V+N
Sbjct: 164 ---------NDKSNINKYYIALVRNSPKNFKAMINAP-----IEYSQSKQRAIVSNIIDE 209
Query: 124 SAQHAVTRYQVIKP--------------SCHGY-------TWLKLSPLTGRKHQLRVHCA 162
+++ A T YQV+ S H Y + LK+ GRKHQ+RVH +
Sbjct: 210 NSKSAHTHYQVLAQFKMEDKNLAAKIINSEHDYIKDWGDFSLLKIRIQEGRKHQIRVHLS 269
Query: 163 EVLGTPIVGDYKYGWQTHRK 182
E+ TPIVGD +Y + H++
Sbjct: 270 EISKTPIVGDARYFDKNHQE 289
>gi|339490789|ref|YP_004705294.1| pseudouridine synthase [Leuconostoc sp. C2]
gi|338852461|gb|AEJ30671.1| pseudouridine synthase [Leuconostoc sp. C2]
Length = 308
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + K SA + + N+ R Y+ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDVA---------HKALSAQLKAHKND-----RIYYALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I+AP+G+ VD K + V + A+T ++V+ G+T LK+
Sbjct: 175 EFSEDSGTINAPIGRHPVDR-KRQAVQV-------GGREAITHFEVVHRYV-GFTLLKVR 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PIVGD YG
Sbjct: 226 LETGRTHQIRVHLTYI-GHPIVGDPVYG 252
>gi|261339387|ref|ZP_05967245.1| ribosomal large subunit pseudouridine synthase [Enterobacter
cancerogenus ATCC 35316]
gi|288318188|gb|EFC57126.1| ribosomal large subunit pseudouridine synthase [Enterobacter
cancerogenus ATCC 35316]
Length = 315
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ V+ APL K ++ +G +RI VN + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKVVQAPLLKNILQSG--ERIVRVNQE----GKPSETRFKV-EERYEFATLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>gi|296111936|ref|YP_003622318.1| pseudouridine synthase [Leuconostoc kimchii IMSNU 11154]
gi|295833468|gb|ADG41349.1| pseudouridine synthase [Leuconostoc kimchii IMSNU 11154]
Length = 308
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+DRD+SG+L++ + + K SA + + N+ R Y+ALV G
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDVA---------HKALSAQLKAHKND-----RIYYALVRG 174
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I+AP+G+ VD K + V + A+T ++V+ G+T LK+
Sbjct: 175 EFSEDSGTINAPIGRHPVDR-KRQAVQV-------GGREAITHFEVVHRYV-GFTLLKVR 225
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PIVGD YG
Sbjct: 226 LETGRTHQIRVHLTYI-GHPIVGDPVYG 252
>gi|269962047|ref|ZP_06176401.1| ribosomal large subunit pseudouridine synthase C [Vibrio harveyi
1DA3]
gi|269833131|gb|EEZ87236.1| ribosomal large subunit pseudouridine synthase C [Vibrio harveyi
1DA3]
Length = 355
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FR
Sbjct: 156 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRG 212
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 213 KT--------------VKKFYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 252
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++V++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 253 ---GKPSETRFKVLE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 302
>gi|372210238|ref|ZP_09498040.1| pseudouridine synthase [Flavobacteriaceae bacterium S85]
Length = 285
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 44/153 (28%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P+ +HRLD +SG+L++G+T S VL +F++ R +Q+ Y A+ G
Sbjct: 127 PQPIHRLDFATSGLLLVGKTARSLHVLGDLFKD--------------RKIQKTYIAITQG 172
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYT--- 143
++G I++P+ + +V+ ++V+K PS YT
Sbjct: 173 K-MLTEGQITSPI----------------------EDKESVSMFKVLKTVPS-EKYTCLN 208
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
W++L PLTGR+HQLR+HCA LGTPI+GD YG
Sbjct: 209 WVELKPLTGRRHQLRIHCA-YLGTPILGDTLYG 240
>gi|354594975|ref|ZP_09013012.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
gi|353671814|gb|EHD13516.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
Length = 222
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P LVHRLD+D++G LV+ + + S F EK+ + + YWA+V G
Sbjct: 55 PWLVHRLDQDTAGCLVIALRKQALINAQSCF--------------EKKQVTKIYWAIVKG 100
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P + G I+APL KV D S + Q Q A T+++++ S + L+L
Sbjct: 101 KPSENSGHINAPLLKVTKDKQWSMQ-------QDPKGQAASTKWKLLG-SNGDISCLELQ 152
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
LTGR HQ R HCA +LG PI+GD Y
Sbjct: 153 LLTGRTHQARAHCA-ILGHPIIGDTIYN 179
>gi|61554746|gb|AAX46608.1| hypothetical protein FLJ14494 [Bos taurus]
Length = 304
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 40/195 (20%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+Y+V+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYRVLS-SSLSAALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKY 175
+ L PI+GD+KY
Sbjct: 275 MSFGLDCPILGDHKY 289
>gi|414155728|ref|ZP_11412038.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410872663|gb|EKS20604.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 296
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 29/161 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMVAKNDQAHVALAEELKDKKS--------------LRKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLK 146
+G+I AP+G+ D K Q ++A+ AVTR+QV++ YT ++
Sbjct: 171 NLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE-RFGDYTLVE 219
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK-QF 186
L TGR HQ+RVH A +G P+ GD YG + K K QF
Sbjct: 220 LQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGKGQF 259
>gi|333978716|ref|YP_004516661.1| RluA family pseudouridine synthase [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333822197|gb|AEG14860.1| pseudouridine synthase, RluA family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 305
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 23/148 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++++ + + L +++ + R Y AL G
Sbjct: 132 PGIVHRLDKDTSGLIMVAKNDFTHLELARQLKDRRVT--------------RRYTALAHG 177
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ +G + AP+G+ D R+ VV+ +HAVT Y ++K YT L+L
Sbjct: 178 NFKEDRGTVDAPIGRHPRDR---QRMAVVSR----GGRHAVTHY-MVKERFGQYTLLELK 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A LG P+VGD KYG
Sbjct: 230 LETGRTHQIRVHMA-YLGHPLVGDLKYG 256
>gi|419779021|ref|ZP_14304902.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
gi|383186785|gb|EIC79250.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
Length = 299
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 28/150 (18%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHR+D+D+SG+L++ + + L ++K R YWA+V G
Sbjct: 125 PGIVHRIDKDTSGLLMIAKNDEAHLALAQELKDKKSL--------------RKYWAIVHG 170
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLK 146
+GVI AP+G+ D K Q ++A+ AVTR+QV++ Y+ L+
Sbjct: 171 NLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE-RFGDYSLLE 219
Query: 147 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
L TGR HQ+RVH A +G P+ GD YG
Sbjct: 220 LQLETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|309778048|ref|ZP_07672988.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914185|gb|EFP59985.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
Length = 304
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P ++HR+D+D++G+L++ + + L + KT + R Y+ALV G
Sbjct: 130 PGIIHRIDKDTTGLLIVAKNDLAHASLSKQLQSKT--------------VNRLYYALVHG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+ G I AP+G+ V D K +T N ++ A T +QVI+ YT ++
Sbjct: 176 VIQHDFGTIDAPIGRDVKDRQKM-AVTSTN------SKDARTHFQVIE-RFENYTLVECR 227
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 228 LETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|223997012|ref|XP_002288179.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975287|gb|EED93615.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 175
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLDRD+SG+ ++ R + LH F++KT R+ +R Y ALV G
Sbjct: 2 VVHRLDRDTSGVFLLARNDEALKTLHDDFKDKT----------RGRVTKR-YVALVCGHW 50
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
A ++ D G+ D V + + + A T ++ P T ++L P+
Sbjct: 51 NSDNASCVA--DRMTTDEGEIDLPLVRDIENPPFMRVATTGNEIKLP----VTRVELQPI 104
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGW 177
TGR HQLRVHCA +G PIVGD YG+
Sbjct: 105 TGRTHQLRVHCA-AMGYPIVGDSIYGY 130
>gi|119469873|ref|ZP_01612711.1| ribosomal large subunit pseudouridine synthase A [Alteromonadales
bacterium TW-7]
gi|119446856|gb|EAW28128.1| ribosomal large subunit pseudouridine synthase A [Alteromonadales
bacterium TW-7]
Length = 550
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD +SG+L++ + + + F E+T EKR Y ALV G
Sbjct: 391 PLIVHRLDMSTSGLLIIALNKRAHKAIQKQFIERTI---------EKR-----YVALVDG 436
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
G I PL D R V + A+T +QV++ + T L+L
Sbjct: 437 NIEQESGTIELPL---TPDFDDKPRQKVC----YQKGKPALTTWQVLE-RKNNTTRLQLY 488
Query: 149 PLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 181
P TGR HQLRVHCA VLG TPI+GD YG + R
Sbjct: 489 PKTGRTHQLRVHCAHVLGLNTPIIGDTHYGKKADR 523
>gi|421497787|ref|ZP_15944935.1| ribosomal large subunit pseudouridine synthase C [Aeromonas media
WS]
gi|407183110|gb|EKE57019.1| ribosomal large subunit pseudouridine synthase C [Aeromonas media
WS]
Length = 307
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
M V GG G+ + E L A + E LVHRLDRD+SG+L++ + +++ LH
Sbjct: 103 MAVHGGSGLSFGVIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQL 159
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +++ Y ALV G + V++APL K + +G +R+ V++
Sbjct: 160 RVKT--------------MRKQYLALVRGQWQSHVKVVNAPLRKNDLQSG--ERVVRVSS 203
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
D + + TR+++ + T ++ SP+TGR HQ+RVH G PI D KYG
Sbjct: 204 D----GKPSETRFRIARQFSEA-TLVECSPITGRTHQIRVHTQHA-GHPIACDDKYG 254
>gi|383453058|ref|YP_005367047.1| RNA pseudouridine synthase family protein [Corallococcus
coralloides DSM 2259]
gi|380734164|gb|AFE10166.1| RNA pseudouridine synthase family protein [Corallococcus
coralloides DSM 2259]
Length = 324
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 62/246 (25%)
Query: 25 YSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWA 84
++EP HRLDR++SG++V GRT S VL +F R + + Y A
Sbjct: 133 FAEP---AHRLDRETSGLVVCGRTTESCRVLGGLFL--------------SRDVHKEYLA 175
Query: 85 LVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG--- 141
L G P V+ AP+ + +D I + + + + TR+QV++ HG
Sbjct: 176 LCEGQPSEDTFVVDAPIAE------GTDLIRIAVRIDPVVGKPSRTRFQVLQRFMHGDAP 229
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 201
+ L+ P TGR+HQ+RVH E G P+VGD YG P + S +
Sbjct: 230 FALLRCFPETGRQHQIRVHLREA-GFPLVGDKMYGPD---------PGYFDRFSKHSLEP 279
Query: 202 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 261
E L PR LH + +T P+ ET+ +P
Sbjct: 280 EAWARLRL-----------PRHALHAERITFPHPGTG---------------ETVTFASP 313
Query: 262 LPSHMQ 267
LP ++
Sbjct: 314 LPDDLK 319
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,513,134,599
Number of Sequences: 23463169
Number of extensions: 185144286
Number of successful extensions: 403393
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 10907
Number of HSP's that attempted gapping in prelim test: 382774
Number of HSP's gapped (non-prelim): 13329
length of query: 275
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 135
effective length of database: 9,074,351,707
effective search space: 1225037480445
effective search space used: 1225037480445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)