BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023907
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana
GN=At3g19440 PE=2 SV=1
Length = 477
Score = 320 bits (821), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 167/275 (60%), Positives = 210/275 (76%), Gaps = 6/275 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ VQGG GI+ SIDELAA+CL +D SE PRLVHRLDRD SG+LV+ RTQT+ATVLHSIFR
Sbjct: 201 LAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFR 260
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT AS + L+R Y ALV+G P +G ISAPL KVVVD+GKS+RITV +N
Sbjct: 261 EKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNG 320
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 180
+++S QHA+T Y+VI+ S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H
Sbjct: 321 ELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 380
Query: 181 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240
+ + F +S ++N K+ + FGLDL+ G + KQP LHLH K++ LPN+SQ ++
Sbjct: 381 KAREPF----VSSENNPT--KQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLE 434
Query: 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
K+Q+SS D+S L++LK APLPSHMQ S+++L S
Sbjct: 435 KMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>sp|Q5XET6|PUS3_ARATH RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana
GN=At1g78910 PE=2 SV=1
Length = 478
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 191/282 (67%), Gaps = 10/282 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+PV+G + I S+D LAA L++ E PRLVHRLDR++SG+LVMGRT+ S LHS+F
Sbjct: 197 LPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFS 256
Query: 61 E-KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
+ K ++S + + + + YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ +
Sbjct: 257 DYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQG 316
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
++Q A+T Y+V+ P +G +W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 317 SGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFV 376
Query: 180 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 239
H++WKQ D+ + + P + GLD++ GS+L K P LHLHC+EM LPN+++ +
Sbjct: 377 HKRWKQMPQVDIEPTTGK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFL 434
Query: 240 QKVQ------LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ L +G + K + L+ VA +PSHM+ SW++++S
Sbjct: 435 HVMNQQETEPLHTGI-IDKPDLLRFVASMPSHMKISWNLMSS 475
>sp|Q0J4D4|PUS3_ORYSJ RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0520100 PE=2 SV=1
Length = 475
Score = 257 bits (657), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 187/281 (66%), Gaps = 9/281 (3%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+P++G + + S+D LAA L+Y E P+LVHRLDR+SSG+L+ GRT+ S T LH +F
Sbjct: 195 VPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFT 254
Query: 61 EKTFSASKED--NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
+ + N + +QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + +
Sbjct: 255 SVNLAKTNSQVWNAACEAYMQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAH 313
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
I AQ AVT Y+V+ P+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW
Sbjct: 314 PSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 373
Query: 179 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238
H++WKQ D + E P + GL+++ GS+L K P LHLHC+EM +PN+++
Sbjct: 374 VHQRWKQNPQPDFEPFTGE--PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKF 431
Query: 239 IQKV----QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 275
+ + + K L+ +AP+P+HM+ SW++++S
Sbjct: 432 LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSS 472
>sp|Q69K07|PUS4_ORYSJ RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os09g0103500 PE=2 SV=1
Length = 448
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 4/156 (2%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
MPVQGG+GI+ SID LA+ + SE PRLVHRLDRD SGILV+GR Q S ++LH+IFR
Sbjct: 194 MPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFR 252
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT A D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+T+ +
Sbjct: 253 EKTADALA---DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASS 309
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 156
S Q A+T Y+VI+ GYTWL+L P TGRKHQ
Sbjct: 310 NAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345
>sp|Q28C59|RUSD4_XENTR RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus
tropicalis GN=rpusd4 PE=2 SV=1
Length = 324
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 60/256 (23%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDY---SEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG + RS+ L + + +EP +L HRLDRD++G L++ RT +A +
Sbjct: 67 LPVHGGPTVERSVASLLPALAKHHFGWKAEPLKLCHRLDRDTTGALILARTTEAAERVQQ 126
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKV------------- 104
RE R + R YWAL +GTP +G++ P+ +
Sbjct: 127 ALRE--------------REVHRVYWALCLGTPSPREGILDIPIMEKETSGPQKHYKMAL 172
Query: 105 -----VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRV 159
V + G +R+ V SA AVTRY+ + + G + ++L P+TG KHQLRV
Sbjct: 173 SPRFRVSEEGAVERVRVPR-----SAHEAVTRYRTLG-AASGASLVELHPITGVKHQLRV 226
Query: 160 HCAEVLGTPIVGDYKYG-WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILE 218
H A L PI+GD+KY W R Q P + + +P+ +TL
Sbjct: 227 HLALGLNCPILGDHKYSHWG--RLAPQKPPDSVLRALGLTVPQARTLS------------ 272
Query: 219 KQPRLHLHCKEMTLPN 234
LHLH ++TLP+
Sbjct: 273 ----LHLHAVQLTLPS 284
>sp|Q68XB2|RLUC_RICTY Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=rluC PE=3
SV=1
Length = 303
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 109/194 (56%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G++ + +GK G+ +IT +++D
Sbjct: 165 EK--------------LVIKKYFAITYGRPVKNVGIVKSNIGK---SKGRMFKITDIDSD 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILGDDKYGNKEV 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>sp|Q4QQT0|RUSD4_RAT RNA pseudouridylate synthase domain-containing protein 4 OS=Rattus
norvegicus GN=Rpusd4 PE=2 SV=1
Length = 377
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 127/294 (43%), Gaps = 71/294 (24%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R +++ YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ + + AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 RPSYRMDNGKMVKVRASRDAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
A L PI+GD+KY W + P LS + +++ GL +
Sbjct: 275 LAFGLDCPILGDHKYS-----DWNRLAPQKLSAGTLKKL--------GLQQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274
LHLH +++ LP + S+ E L L LP RS L
Sbjct: 320 --LHLHARQLILPALG--------------SRTEELLLACKLPHFFARSLRRLG 357
>sp|Q92IS6|RLUC_RICCN Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rluC PE=3
SV=1
Length = 303
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 108/194 (55%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+ +SG+L++ + S+ LH+ F+
Sbjct: 107 LATQGGTKINLSIDS-ALKYLNYKGADF-KLVHRLDKKTSGLLLIAKNYLSSVKLHNAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT ++++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 208 ---NGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>sp|Q9ZDR7|RLUC_RICPR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
prowazekii (strain Madrid E) GN=rluC PE=3 SV=1
Length = 303
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 26/194 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S+ LH+ F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLHNAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + +GK R++ + N
Sbjct: 165 EK--------------LVIKKYFAITYGRPVKNVGTVKSNIGK------SKRRLSKIANI 204
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ A+T Y+++K + ++ P+TGR HQLR+H A++LG PI+GD KYG +
Sbjct: 205 DSDDGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 264 MPYSKYMFLHANNI 277
>sp|Q96CM3|RUSD4_HUMAN RNA pseudouridylate synthase domain-containing protein 4 OS=Homo
sapiens GN=RPUSD4 PE=2 SV=1
Length = 377
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 57/264 (21%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR R + + YWA+ V P S GV+ P+ +
Sbjct: 175 LFRT--------------RQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL+ +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQL 244
LHLH +++ LP + +++ L
Sbjct: 320 --LHLHARQLILPALGSGKEELNL 341
>sp|Q1RJX7|RLUC_RICBR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
bellii (strain RML369-C) GN=rluC PE=3 SV=1
Length = 301
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPP--RLVHRLDRDSSGILVMGRTQTSATVLHSI 58
+ QGG I S+D + L Y S+ +LVHRLD+++SG+L++ + S+ LH
Sbjct: 107 LATQGGSKINLSVD----SALKYLNSQGADFKLVHRLDKETSGLLLIAKNYVSSVKLHDA 162
Query: 59 FREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN 118
F+EK ++++ Y A+ G P +G + + K G +IT +N
Sbjct: 163 FKEK--------------LVEKTYLAVTYGKPIKDQGEVKTNIEK---SKGSIPKITDIN 205
Query: 119 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-- 176
++ + + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI GD KYG
Sbjct: 206 DN---NGKLAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLH-AKLLGCPIFGDNKYGND 261
Query: 177 -WQTHRKWKQFHPSDL 191
+ K+ H +++
Sbjct: 262 KLMPYSKYMFLHANNI 277
>sp|Q4UKQ3|RLUC_RICFE Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3
SV=1
Length = 305
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 29/213 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ QGG I SID A L Y ++ +LVHRLD+++SG+L++ + S LH F+
Sbjct: 107 LATQGGSKINLSIDS-ALKYLNYKGADF-KLVHRLDKETSGLLLIAKNYLSNVKLHDAFK 164
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK ++ + Y+A+ G P + G + + + K G + +IT + ++
Sbjct: 165 EK--------------LVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIYSE 207
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT- 179
+ + A+T Y+++K + ++ +P+TGR HQLR+H A++LG PIVGD KYG +
Sbjct: 208 ---NGKLAITYYKLLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPIVGDDKYGNKEI 263
Query: 180 --HRKWKQFHPSDL---SKDSNEEIPKEKTLHF 207
+ K+ H +++ K +EI E L F
Sbjct: 264 MPYSKYMFLHANNICLSEKIFGKEINLEAKLPF 296
>sp|Q9CWX4|RUSD4_MOUSE RNA pseudouridylate synthase domain-containing protein 4 OS=Mus
musculus GN=Rpusd4 PE=2 SV=1
Length = 377
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 126/289 (43%), Gaps = 71/289 (24%)
Query: 1 MPVQGGIGIRRSIDE---LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I + + A L +EP L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV----------- 106
+FR R +++ YWA+ V P S GV+ P+ + V
Sbjct: 175 LFRT--------------RQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTL 220
Query: 107 ------DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
DNGK ++ + + AVT+YQV+ S ++L P+TG KHQLRVH
Sbjct: 221 SPSYRLDNGKMVKVRASRDAHV-----AVTQYQVLS-SASSSALVELQPVTGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS + +++ GL +
Sbjct: 275 LSFGLDCPILGDHKYS-----DWTRLAPQKLSAGTLKKL--------GLQQSKARYIP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRS 269
LHLH +++ LP + S+ E L L LP RS
Sbjct: 320 --LHLHARQLILPALG--------------SRTEELLLTCKLPHFFARS 352
>sp|Q5E9Z1|RUSD4_BOVIN RNA pseudouridylate synthase domain-containing protein 4 OS=Bos
taurus GN=RPUSD4 PE=2 SV=1
Length = 377
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 59/268 (22%)
Query: 1 MPVQGGIGIRRSIDELA---ATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHS 57
+PV GG G++ I ++ A L ++P L HRLD++++G++V+ + A +
Sbjct: 115 LPVHGGPGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQE 174
Query: 58 IFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK-------------- 103
+FR + + + YWA+ V P GV+ P+ +
Sbjct: 175 LFRTRQVT--------------KKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTL 220
Query: 104 ---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
+D+GK R+ N AQ AVT+YQV+ S L+L P+TG KHQLRVH
Sbjct: 221 SPSYRMDDGKMVRVRSSRN-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVH 274
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
+ L PI+GD+KY W + P LS +++ GL L
Sbjct: 275 MSFGLDCPILGDHKYS-----DWNRLAPQKLSAGILKKL--------GLQQSKARHLP-- 319
Query: 221 PRLHLHCKEMTLPNVSQAIQKVQLSSGC 248
LHLH ++TLP + QK +L+ C
Sbjct: 320 --LHLHACQLTLPALQP--QKEELTLLC 343
>sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=ZMO0505 PE=3 SV=2
Length = 219
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
LA+ C + + P +VHRLDRD+SG L++ R L F +
Sbjct: 40 LASLC--FGFKRWPSIVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQ------------ 85
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
+++ YWA++ G P ++G+I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 --VKKCYWAILEGVPEKNEGIIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEIL 137
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ G + + P TGR HQLRVH A LG PIVGD YG
Sbjct: 138 AKN-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYG 177
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VQKYYFALVMGEWKNSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR++VI+ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKVIEKFPQA-TLVQASPITGRTHQIRVHT-QYSGHPIAWDDRYG 260
>sp|Q6DBR0|RUSD4_DANRE RNA pseudouridylate synthase domain-containing protein 4 OS=Danio
rerio GN=rpusd4 PE=2 SV=1
Length = 358
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 1 MPVQGGIGIRRSIDE-LAATCLTYDYSEPP---RLVHRLDRDSSGILVMGRTQTSATVLH 56
+P+ GIR SI E L D P L H+L+++++G+L++ +T+ +A +
Sbjct: 107 VPLHNINGIRNSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQ 166
Query: 57 SIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAP---------------- 100
++ + ++ Y A+ VG P S+GVI P
Sbjct: 167 TLIQSHK--------------VEMKYLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMA 212
Query: 101 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160
L + N D +T V + A AVTRYQV+ + G + ++L PLTG K+QLRVH
Sbjct: 213 LSPLFKVNEDGDGVTRVRAHR--QAHAAVTRYQVLD-NTSGCSLVELQPLTGVKNQLRVH 269
Query: 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 220
A L PI+GD+KY W + P +++P+ GL L
Sbjct: 270 MALALTCPILGDHKYSH-----WSKLAP--------QKLPEGTLRRLGLVQSKTRYLP-- 314
Query: 221 PRLHLHCKEMTLP 233
LHLH + + LP
Sbjct: 315 --LHLHSRRIVLP 325
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 98/175 (56%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G++ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 114 VHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT ++++Y+ALV+G + S V++APL K V++ I VN +
Sbjct: 171 KT--------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNS-----IVRVNPN- 210
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 211 ---GKPSETRFKILE-KFEQATLIQASPITGRTHQIRVHT-QYTGHPIAWDDRYG 260
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 29/175 (16%)
Query: 3 VQGGIGIRR-SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFRE 61
V GG G+ +I+ L A + E LVHR+DRD+SGIL++ + +++ L + FRE
Sbjct: 115 VHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171
Query: 62 KTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 121
KT +Q++Y+ALV+G V++APL K V++ I VN +
Sbjct: 172 KT--------------VQKYYYALVMGHWDAECKVVNAPLLKNEVNS-----IVRVNPN- 211
Query: 122 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D +YG
Sbjct: 212 ---GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVHT-QYMGHPIAWDDRYG 261
>sp|P47451|Y209_MYCGE Uncharacterized RNA pseudouridine synthase MG209 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG209 PE=3 SV=1
Length = 308
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 16 LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 75
L A C+ ++ P LVHRLDRD+SG +V+ + Q S L + + +T
Sbjct: 111 LLAACIFHNNKNPVYLVHRLDRDTSGAIVVCKNQASLLNLQNQLQNRT------------ 158
Query: 76 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 135
L+R+Y ALV G I+APL + V+N K + Q A+ A+T+++VI
Sbjct: 159 --LKRYYVALVHFPFNALTGSINAPLAR--VNNNK----VMFKIAQTAKAKQAITKFKVI 210
Query: 136 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK--WKQF 186
+ + L LTGR HQ+RVH + + P+ D YG ++ +K + QF
Sbjct: 211 NQN-EKAALISLELLTGRTHQIRVHL-KFIQHPVYNDPLYGIKSEKKDSYGQF 261
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SGIL++ + +++ LH REK ++Q+ Y ALV G
Sbjct: 142 LVHRIDRDTSGILLVAKKRSALRALHEQLREK--------------VVQKDYLALVRGQW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ VI APL K + +G +RI V+ + + TR+ I+ T +K SP+
Sbjct: 188 QAHINVIKAPLLKNELQSG--ERIVKVSE----QGKPSETRFS-IEERYPNATLIKASPI 240
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
TGR HQ+RVH + G PI D +YG Q
Sbjct: 241 TGRTHQIRVHT-QYAGHPIACDDRYGDQA 268
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 24/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG G+ + E A L D + LVHRLDRD+SGIL++ + +++ LH R
Sbjct: 117 IAVHGGSGLSFGVIE-ALRTLRPD-ARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLR 174
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EKT +Q+ Y ALV G + V+ APL K + +G +RI V+
Sbjct: 175 EKT--------------VQKDYLALVRGQWQSHCKVVKAPLLKNELSSG--ERIVRVSE- 217
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+ I+ T +K SP+TGR HQ+RVH + G PI D KYG
Sbjct: 218 ---QGKPSETRFS-IEERYEYATLVKASPVTGRTHQIRVHT-QYAGHPIALDDKYG 268
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D++G +V+ +T+ + L +EKT +R YW +V G
Sbjct: 149 PGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTA--------------RRLYWGIVYG 194
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
+P+ +G ++ P+G+ G ++ +V ++ + AVT +++++ ++WL+
Sbjct: 195 SPKEIQGTVNLPVGR---HPGDRQKMGIVPVEK--GGREAVTHWRLLE-RIGNHSWLEFQ 248
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKY 175
TGR HQ+RVH + +G P+VGD Y
Sbjct: 249 LETGRTHQIRVHSKQ-MGHPLVGDNLY 274
>sp|Q8ZFU1|RLUC_YERPE Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis
GN=rluC PE=3 SV=1
Length = 320
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 22/148 (14%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH R K+ +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKS--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ I APL K ++ +G +R+ V+++ + + TR+++ + H T +K SP+
Sbjct: 185 QSHCKAIQAPLLKNIMQSG--ERVVKVSSE----GKPSETRFKIEERFEHA-TLVKASPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
TGR HQ+RVH G PI D +YG++
Sbjct: 238 TGRTHQIRVHALHA-GHPIAFDDRYGYR 264
>sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723
PE=3 SV=1
Length = 327
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 56/239 (23%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+D+SG++++ + + T LH + R+ F+ R +++ Y A+V G
Sbjct: 130 PGIVHRLDKDTSGLIIIAK---NPTALHKLARQ--FA---------NRQVEKVYKAIVWG 175
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P+ G I +G+ + K+ ++ + +HA+T YQV++ + ++ + ++
Sbjct: 176 VPKAESGTIKTNIGR----SHKNRKVMANFPYEGAEGKHAITDYQVVEDLGY-FSLMDVT 230
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG 208
TGR HQ+RVH LG I+GD YG T R +P K+ F
Sbjct: 231 LHTGRTHQIRVHLQH-LGHSILGDETYGGATPRT----------------LPFSKSEPF- 272
Query: 209 LDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQ 267
+ ++LE R LH +Q ++ Q ++G E L APLP M+
Sbjct: 273 ----TRNLLELMSRQALH---------AQTLRFRQPTTG------EPLSFSAPLPEDME 312
>sp|Q8Z7J7|RLUC_SALTI Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhi GN=rluC PE=3 SV=1
Length = 319
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ + APL K ++ +G +RI V+ + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKTVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>sp|Q8ZQ16|RLUC_SALTY Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluC PE=3 SV=1
Length = 319
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ + APL K ++ +G +RI V+ + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKTVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ + APL K ++ +G +RI V+ + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKSVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ + APL K ++ +G +RI V+ + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKSVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ + APL K ++ +G +RI V+ + + + TR++V + T ++ SP+
Sbjct: 185 QSHVKSVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + +++ LH REK +Q+ Y ALV G
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQKDYLALVRGQW 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
+ + APL K ++ +G +RI V+ + + + TR++V + T ++ SP+
Sbjct: 185 QSYVKSVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEERYAFA-TLVRCSPV 237
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH + G PI D +YG
Sbjct: 238 TGRTHQIRVHT-QYAGHPIAFDDRYG 262
>sp|Q9KU20|RLUD_VIBCH Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluD PE=3 SV=1
Length = 324
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 30/168 (17%)
Query: 14 DELAATCLTYDYS---EPPR--LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASK 68
D+ L + YS E PR +VHRLD+D++G++V+ +T + T L
Sbjct: 112 DKTVLNALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRAL--------- 162
Query: 69 EDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 128
+KR + R Y A+V+GT + G+I P+G+ S + T+++ + +HA
Sbjct: 163 -----QKRDVTREYEAIVIGT-MTAGGMIDKPIGR------HSTKRTLMSVSPM--GKHA 208
Query: 129 VTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
VT Y+V + +T L+L TGR HQ+RVH A L P++GD YG
Sbjct: 209 VTHYRVAE-HFREHTRLRLRLETGRTHQIRVHMA-YLQHPLLGDTAYG 254
>sp|Q3ECD0|PUS2_ARATH RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g76050 PE=2 SV=1
Length = 430
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 73
+E+ + +Y S P +VHRLD+ ++G+LV+ + + S L F+ T
Sbjct: 212 EEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT---------- 261
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-NNDQIMSAQHAVTRY 132
++R Y +L G P +G I P+G+ D+ R+ + + A+HA +RY
Sbjct: 262 ----IERVYVSLTTGVPSPPQGRIEIPIGR---DSSNRIRMAAIPGGVRGGRARHAASRY 314
Query: 133 QVIKPSCHGYTWL---KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 189
+VI+ G + L +L TGR HQ+R H A+ +G P++GD YG
Sbjct: 315 KVIETFAGGGSALVEWRLE--TGRTHQIRAH-AKYMGVPLLGDEVYGGTKSMALSLLQ-K 370
Query: 190 DLSKDSNEEI 199
+S+ EEI
Sbjct: 371 RVSRSDQEEI 380
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 24/148 (16%)
Query: 30 RLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGT 89
R VHRLD+D+SG +V + + + +L D EK+ L+R Y A+ G
Sbjct: 132 RHVHRLDQDTSGAIVFAKHRLAHAIL--------------DQQLEKKTLKRTYTAIAEGK 177
Query: 90 PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC-HGYTWLKLS 148
R KG I++P+G+ DR Q AVT ++V+ + + ++L
Sbjct: 178 LRTKKGTINSPIGR--------DRSHPTRRRVSPGGQTAVTHFKVMASNAKERLSLVELE 229
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A LG P+ GD YG
Sbjct: 230 LETGRTHQIRVHLAS-LGHPLTGDSLYG 256
>sp|Q9HZM9|RLUC_PSEAE Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluC PE=3 SV=1
Length = 318
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 34/191 (17%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHRLDRD+SG+L++ + ++ LH R ++I+ + Y ALV G
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHEALR-------------GEKIVDKRYHALVRGHW 187
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
K + APL K + +G +R+ VN + + A+T ++V++ T ++ P+
Sbjct: 188 PAGKKNVRAPLLKNNLRSG--ERMVEVN----VEGKDALTEFRVLRRFGDFATLVEARPI 241
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFG-- 208
TGR HQ+RVH G I GD KYG + D S++ E K LH
Sbjct: 242 TGRTHQIRVHAKHA-GHAIAGDPKYGDE-----------DFSREIRELGGKRLFLHAAQL 289
Query: 209 -LDLESGSILE 218
+ L G +LE
Sbjct: 290 RVPLPDGQVLE 300
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 26/177 (14%)
Query: 1 MPVQGGIGIRRS-IDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 59
+ V GG G+ I+ L A + E LVHRLDRD+SGIL++ + +++ LH
Sbjct: 116 IAVHGGSGLNFGVIEALRALRPEARFLE---LVHRLDRDTSGILLIAKKRSALRNLHEQL 172
Query: 60 REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
R KT +Q+ Y ALV G + VI A L K + +G +RI V+
Sbjct: 173 RVKT--------------VQKDYLALVRGQWQSHIKVIQASLLKNELSSG--ERIVRVSE 216
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ + TR+ + + + T +K SP+TGR HQ+RVH + G PI D KYG
Sbjct: 217 ----QGKPSETRFSIEERYINA-TLVKASPVTGRTHQIRVHT-QYAGHPIALDDKYG 267
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 25/148 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLDRD+SG+LV+ R + L + + R +++ Y ALV+G
Sbjct: 141 PGIVHRLDRDTSGLLVIARHDQAMRSL--------------VDQQQARRMRKIYQALVIG 186
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P G I AP+G+ D R+ VV + + A T Y+++ + Y+ L++
Sbjct: 187 RP-PETGTIDAPIGR---DPRDRLRMAVVPD-----GRPARTHYRLLD-TFGDYSLLEVQ 236
Query: 149 PLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH LG PIVGD YG
Sbjct: 237 LETGRTHQIRVHLRH-LGYPIVGDPVYG 263
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluC PE=3 SV=1
Length = 315
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 26/179 (14%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
M V G GI + E + Y+ LVHRLDRD+SG+L++ + ++ LH R
Sbjct: 111 MSVHSGSGINYGMIE--NLRILRPYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLHEQLR 168
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGT-PRCSKGVISAPLGKVVVDNGKSDRITVVNN 119
EK +++ Y ALV G P K IS PL K K+ +V
Sbjct: 169 EKK--------------IKKKYVALVHGVWPDILKS-ISKPLLKTSSRKNKN----IVKI 209
Query: 120 DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 178
D + ++T + + K T + ++P+TGR HQ+RVH L PIV D KYG +
Sbjct: 210 DP--KGKESITHFNIKKKYTKN-TLISITPITGRTHQIRVHLLH-LNYPIVLDAKYGIK 264
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 29/156 (18%)
Query: 24 DYSEPPR--LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRW 81
D + PR +VHRLD+D++G++V+ +T + T L + + ++ S R
Sbjct: 124 DIANVPRAGIVHRLDKDTTGLMVVAKTLEAHTKLVAQLQARSVS--------------RI 169
Query: 82 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPSCH 140
Y A+V+G S G I AP+G+ V K + VV+ ++ AV+ Y+V+ + H
Sbjct: 170 YEAIVIGVI-TSGGTIDAPIGRHGVQRQK---MAVVDAGKV-----AVSHYRVLERFRAH 220
Query: 141 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+T +KL TGR HQ+RVH + + G P+VGD YG
Sbjct: 221 THTRVKLE--TGRTHQIRVHMSHI-GYPLVGDPVYG 253
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 73
+ L L + +P LVHRLDRD+SG++++ + Q+ S
Sbjct: 109 ESLLGAALFHCNHQPVFLVHRLDRDTSGVIMLAKNQS--------------SLLHLQKQL 154
Query: 74 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 133
++R+++R+Y ALV G ISAPL +V G + + V N A++A T++
Sbjct: 155 QQRVMKRYYLALVHFPLDSLSGTISAPLERV----GNNKVMWKVGNSS-NKAKNAFTKFT 209
Query: 134 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR--KWKQF----- 186
V+ + +K LTGR HQ+RVH + + P+ D YG ++ + ++ Q+
Sbjct: 210 VLNQNEKA-ALIKCELLTGRTHQIRVHL-QFIKHPVYNDPLYGLKSEQATEYGQYLHAQQ 267
Query: 187 ----HPSDLSKDSNEEIPKEKTLHFGLD 210
HP+ L+K+ E +KT LD
Sbjct: 268 ISFIHPT-LNKEMGFEAQLDKTFSDKLD 294
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 25/146 (17%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD+D+SG++V+ RT + T L + SA R + R Y A+VVG
Sbjct: 140 VVHRLDKDTSGVMVVARTVQAQTAL-----VEQLSA---------REVHRQYLAVVVGA- 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
S G +AP +D DR+ + D + AVT Y+ ++ +T L+
Sbjct: 185 LVSGGTANAP-----IDRHPRDRLKMAVRD---DGRDAVTHYR-LRERFRAHTALECRLE 235
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A L +PIVGD YG
Sbjct: 236 TGRTHQIRVHMAH-LKSPIVGDPLYG 260
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 25/146 (17%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
+VHRLD+D+SG++V+ RT + T L + SA R + R Y A+VVG
Sbjct: 140 VVHRLDKDTSGVMVVARTLQAQTAL-----VEQLSA---------RDVHRQYLAVVVGA- 184
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
S G AP +D DR+ + D + AVT Y+ ++ +T L+
Sbjct: 185 LVSGGTADAP-----IDRHPRDRLKMAVRD---DGRDAVTHYR-LRERFRAHTALECRLE 235
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH A L +PIVGD YG
Sbjct: 236 TGRTHQIRVHMAH-LKSPIVGDPLYG 260
>sp|P57430|RLUC_BUCAI Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluC PE=3 SV=1
Length = 314
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 31 LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTP 90
LVHR+DRD+SG+L++ + +TS LH REK +++ Y ALV G
Sbjct: 138 LVHRIDRDTSGVLILAKKRTSLVSLHEQLREKK--------------IKKEYIALVHGLW 183
Query: 91 RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPL 150
IS PL K+ N ++ +++ + + T +Q IK T L + P
Sbjct: 184 PDHIKKISEPLLKIQFKN--KQKMVLIDK----KGKPSETYFQ-IKKKFSSSTLLSIIPK 236
Query: 151 TGRKHQLRVHCAEVLGTPIVGDYKYG 176
TGR HQ+RVH G PI D +YG
Sbjct: 237 TGRTHQIRVHALHA-GHPIFFDKRYG 261
>sp|Q0DST9|PUS5_ORYSJ RNA pseudourine synthase 5 OS=Oryza sativa subsp. japonica
GN=Os03g0288500 PE=2 SV=2
Length = 397
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 40/246 (16%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNE---KRILQRWYWAL 85
P VHRL R +SG+L+ +T+ + L + F E +A K ++ + R + ++Y AL
Sbjct: 171 PVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEGATNAGKSRDETDICKARKISKFYRAL 230
Query: 86 VVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPSCHGYTW 144
V G + +I+ P+G +V G ++ + + S + A+++ +V+ + H +T
Sbjct: 231 VTGILENDEVMITQPIG-LVRYPGVAEGLYAACS----SGKPAMSKVRVLERLKIHNHTL 285
Query: 145 LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKT 204
+++ +GR HQ+R+H A + G P+V D YG K+ + P+ + DS
Sbjct: 286 IQVEIHSGRPHQIRIHLAYI-GHPLVDDPLYGIGGQPKFDEPEPTS-TADS--------- 334
Query: 205 LHFGLDLESGSILEKQP---RLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 261
F D L+ P HLH + L C + E +K+ AP
Sbjct: 335 --FAYDGGYERPLQPVPGDCGYHLHAHWLVL---------------CHPTTNEMIKITAP 377
Query: 262 LPSHMQ 267
LP +Q
Sbjct: 378 LPHILQ 383
>sp|O67638|Y1758_AQUAE Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex
aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1
Length = 316
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 24/154 (15%)
Query: 27 EPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALV 86
E P +VHRLD++++G++V+ + T+ L F+E R +++Y LV
Sbjct: 131 ERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQE--------------RKTEKFYKVLV 176
Query: 87 VGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP-SCHGYTWL 145
G + G I P+ + VD R V + A+T Y V+K + T L
Sbjct: 177 KGLVKKDYGAIDTPIARHPVDR---KRFWVRKE-----GKEALTEYWVLKRYEKYEITLL 228
Query: 146 KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 179
K+ TGR HQ+RVH A + G P++GD YG+++
Sbjct: 229 KVKIHTGRTHQIRVHFASI-GHPVLGDRTYGFKS 261
>sp|Q8K9J8|RLUC_BUCAP Ribosomal large subunit pseudouridine synthase C OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluC PE=3 SV=1
Length = 314
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFR 60
+ V GG GI + E + + LVHR+DRD+SG+L++ + + S LH R
Sbjct: 110 IAVHGGSGINLGVIEYFRKIRPLE--KFLELVHRIDRDTSGVLMLAKKRRSLLSLHKQIR 167
Query: 61 EKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND 120
EK +Q+ Y ALV G S +S PL K + N R ++N +
Sbjct: 168 EKK--------------VQKKYIALVHGLWPLSLRKVSEPLLKTHLKN--KQRKILINKE 211
Query: 121 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
+ A T +++ K T + ++P TGR HQ+RVH G PI+ D +YG
Sbjct: 212 ----GKPAETYFKIKKQYLFT-TLVSITPKTGRTHQIRVHTLHA-GHPILFDKRYG 261
>sp|Q5Z8P2|PUS2_ORYSJ RNA pseudourine synthase 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os06g0717400 PE=2 SV=1
Length = 445
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 29 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVG 88
P +VHRLD+ +SG+LV+ + + S L F+ T ++R Y +L G
Sbjct: 228 PGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHT--------------IRRVYISLTCG 273
Query: 89 TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLS 148
P + G I P+ + D R+ A+HA +RY+V + G + L
Sbjct: 274 APNPNSGRIEVPIAR---DPNNRIRMIATPGSGHRYARHAASRYKVREVFAGGGSALVEW 330
Query: 149 PL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 193
L TGR HQ+R H A+ LG P++GD YG P S+
Sbjct: 331 RLETGRTHQIRAH-AKYLGIPLLGDETYGGTKSMALSLLRPRTPSR 375
>sp|P59840|TRUC_HAEDU tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=truC PE=3 SV=1
Length = 243
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 33/155 (21%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
+HRLDR +SG+L+ A ++ F E+ +++ Y A+V G
Sbjct: 51 IHRLDRPTSGVLLFALNSEMARLMSEQF--------------EQHKVEKEYLAIVRGYI- 95
Query: 92 CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ----VIKPSCHG------ 141
KG I PL KV++D +D+ + Q +AQ AVT YQ V P G
Sbjct: 96 AEKGEIDYPL-KVILDK-IADKFS-----QPKAAQQAVTFYQNLAKVEMPYSTGKYATTR 148
Query: 142 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
Y+ + LSP TGRKHQLR H + PI+GD KYG
Sbjct: 149 YSLVALSPKTGRKHQLRRHMKHLFH-PIMGDTKYG 182
>sp|Q8ZIK1|RLUA_YERPE Ribosomal large subunit pseudouridine synthase A OS=Yersinia pestis
GN=rluA PE=3 SV=1
Length = 206
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 69/154 (44%), Gaps = 40/154 (25%)
Query: 32 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPR 91
VHRLD +SG++V+ T+ + L FRE R ++ Y A V G
Sbjct: 47 VHRLDMATSGVIVVALTKAAERELKRQFRE--------------REPKKTYIARVWGHLA 92
Query: 92 CSKGVISAPL---------GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGY 142
+G+I PL KV + GKS A T YQVI G
Sbjct: 93 QDEGLIDLPLICDWPNRPKQKVCYETGKS----------------AQTEYQVISRDDDGS 136
Query: 143 TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 176
T +KLSP+TGR HQLRVH +G PI+GD Y
Sbjct: 137 TRVKLSPITGRSHQLRVHML-AMGHPILGDGFYA 169
>sp|Q82WZ5|RLUD_NITEU Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3
SV=1
Length = 344
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 38/197 (19%)
Query: 26 SEPPR--LVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYW 83
S+ PR +VHRLD+D++G+LV+ +T E F +++ ++R ++R Y
Sbjct: 152 SQVPRAGIVHRLDKDTTGLLVVAKT-----------IEAQFDLARQ---LQQRTVKRHYL 197
Query: 84 ALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYT 143
ALV+G GV+ AP+G+ + R+ VV N + A T Y+V++ T
Sbjct: 198 ALVLGKLE-KDGVVDAPIGRHPI---HRTRMAVVQN-----GKPARTHYRVLE-KFTAST 247
Query: 144 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEK 203
L S TGR HQ+RVH + G P+ GD YG + P + D+ +P++
Sbjct: 248 LLHCSLETGRTHQIRVHLLSI-GHPLAGDPVYG--------RTSPDPSTADAVVRLPRQA 298
Query: 204 TLHFGLDL---ESGSIL 217
+ L+L SG IL
Sbjct: 299 LHAWQLELTHPHSGQIL 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,933,887
Number of Sequences: 539616
Number of extensions: 4428016
Number of successful extensions: 9249
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 8994
Number of HSP's gapped (non-prelim): 160
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)