Query 023907
Match_columns 275
No_of_seqs 207 out of 1796
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9k_A Ribosomal large subunit 100.0 2.3E-45 7.9E-50 320.5 23.9 206 1-274 20-225 (228)
2 1v9f_A Ribosomal large subunit 100.0 1.3E-43 4.6E-48 324.5 22.1 210 1-274 101-312 (325)
3 2i82_A Ribosomal large subunit 100.0 4.1E-43 1.4E-47 304.1 19.7 185 1-263 30-216 (217)
4 2oml_A Ribosomal large subunit 100.0 1.2E-32 4.1E-37 233.5 3.5 147 1-178 22-172 (189)
5 2olw_A Ribosomal large subunit 100.0 3.7E-31 1.3E-35 229.0 4.5 146 1-178 50-200 (217)
6 1ksk_A Ribosomal small subunit 99.9 4E-29 1.4E-33 218.4 4.4 136 1-178 74-209 (234)
7 1vio_A Ribosomal small subunit 99.9 4E-28 1.4E-32 213.3 4.9 136 1-178 73-210 (243)
8 2gml_A Ribosomal large subunit 99.9 2.3E-25 7.7E-30 194.1 6.3 129 1-175 25-153 (237)
9 3dh3_A Ribosomal large subunit 99.9 4.5E-24 1.5E-28 191.7 5.0 130 1-176 78-207 (290)
10 2aus_C Pseudouridine synthase; 74.2 2.3 7.7E-05 38.2 3.6 56 14-87 60-115 (334)
11 1k8w_A TRNA pseudouridine synt 72.8 4.2 0.00014 36.4 5.0 56 14-87 39-94 (327)
12 1r3e_A TRNA pseudouridine synt 70.1 3.3 0.00011 36.8 3.6 56 14-87 17-72 (309)
13 2apo_A Probable tRNA pseudouri 69.1 3.2 0.00011 37.6 3.4 56 14-87 80-135 (357)
14 3u28_A H/ACA ribonucleoprotein 65.5 6.7 0.00023 36.0 4.8 47 25-89 84-131 (400)
15 1sgv_A TRNA pseudouridine synt 64.2 4.9 0.00017 35.8 3.5 56 14-87 20-75 (316)
16 2rod_B NOXA, noxaa; MCL-1, apo 27.7 34 0.0012 18.1 1.7 15 260-274 1-15 (27)
No 1
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=2.3e-45 Score=320.49 Aligned_cols=206 Identities=30% Similarity=0.442 Sum_probs=164.0
Q ss_pred CCccCCCCCcCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcce
Q 023907 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80 (275)
Q Consensus 1 l~v~~g~~~~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K 80 (275)
|+||++.+...++.+.+.... .....+++|||||++||||||||+|+++++.|+++|+++. ++|
T Consensus 20 ~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~--------------v~K 83 (228)
T 1v9k_A 20 TAVHGGSGLSFGVIEGLRALR--PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--------------MQK 83 (228)
T ss_dssp SCSSCCSSSBCCHHHHHHHHS--TTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTC--------------SEE
T ss_pred CeEecCCChHHHHHHHHHHHc--CCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCC--------------eeE
Confidence 578887776666655544322 1234689999999999999999999999999999999866 999
Q ss_pred EEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHHHH
Q 023907 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160 (275)
Q Consensus 81 ~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR~h 160 (275)
+|+|+|.|.++...|.|+.+|.+.....|.. .+.+. .+++.|.|.|++++.. .++|+++|+|.|||+||||+|
T Consensus 84 ~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~-~~~~~-----~~gk~a~t~~~vl~~~-~~~slv~~~l~TGR~HQIR~h 156 (228)
T 1v9k_A 84 DYLALVRGQWQSHVKSVQAPLLKNILQSGER-IVRVS-----QEGKPSETRFKVEERY-AFATLVRCSPVTGRTHQIRVH 156 (228)
T ss_dssp EEEEEEESCCCTTCCEECCCEEEEECTTSCE-EEEEC-----TTSBCCCEEEEEEEEC-SSEEEEEEEESSCCTTHHHHH
T ss_pred EEEEEEecccCCCCCEEeCceeccCCCCCce-EEEEC-----CCCcEEEEEEEEEEEc-CCeEEEEEEECCCCchHHHHH
Confidence 9999999999988899999998764433322 22232 2378999999999987 679999999999999999999
Q ss_pred HHhcCCCceeCCCCCCCCccccccccCCCCCCcCCCcccccccccccccccCcCcccccccccccccceeeccCCchhhh
Q 023907 161 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 240 (275)
Q Consensus 161 la~~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LHa~~l~f~~~~~~~~ 240 (275)
|++ +||||+||.+||.... +..+.. ......+++|||++|.|++|
T Consensus 157 la~-lG~PI~gD~~YG~~~~---------------~~~~~~--------------~~~~~~r~~LHa~~l~f~hP----- 201 (228)
T 1v9k_A 157 TQY-AGHPIAFDDRYGDREF---------------DRQLTE--------------AGTGLNRLFLHAAALKFTHP----- 201 (228)
T ss_dssp HHH-TTCCBTTCTTTSCHHH---------------HHHHHH--------------TTCCCCSCCEEEEEEEEECT-----
T ss_pred HHH-CCCcEecCcccCCccc---------------cchhhc--------------ccCCCCChhhccceeEeeCC-----
Confidence 997 9999999999996421 000000 00013579999999999998
Q ss_pred hhhccCCCCCCCCccEEEEcCCchHHHHHHHHhc
Q 023907 241 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274 (275)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~aplP~~f~~~~~~l~ 274 (275)
.+++.+.|+||+|++|..+++.|+
T Consensus 202 ----------~t~~~~~~~aplp~~~~~~l~~l~ 225 (228)
T 1v9k_A 202 ----------GTGEVMRIEAPMDEGLKRCLQKMR 225 (228)
T ss_dssp ----------TTCCEEEEECCCCHHHHHHHHHHH
T ss_pred ----------CCCCEEEEEeCCcHHHHHHHHHhh
Confidence 478999999999999999998875
No 2
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=1.3e-43 Score=324.46 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=162.6
Q ss_pred CCccCCCCC-cCcHHHHHHHHhhc-CCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCc
Q 023907 1 MPVQGGIGI-RRSIDELAATCLTY-DYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRIL 78 (275)
Q Consensus 1 l~v~~g~~~-~~sl~~l~~~~l~~-~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v 78 (275)
|+||++.+. ..++.+.+..++.. .....+++|||||++||||||||+|+++++.|+++|.++. +
T Consensus 101 ~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~--------------v 166 (325)
T 1v9f_A 101 LVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE--------------I 166 (325)
T ss_dssp CCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTC--------------S
T ss_pred CeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCC--------------e
Confidence 578876654 34565555444432 1234689999999999999999999999999999999876 9
Q ss_pred ceEEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHH
Q 023907 79 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLR 158 (275)
Q Consensus 79 ~K~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR 158 (275)
.|+|+|+|.|.++. +|.|+.||.+.... ..++.+.. +++.|.|.|++++.. .++|+++|+|.|||+||||
T Consensus 167 ~K~Y~a~v~G~~~~-~g~i~~~i~~~~~~---~~~~~v~~-----~gk~a~t~~~vl~~~-~~~slv~~~l~TGR~HQIR 236 (325)
T 1v9f_A 167 TREYEAVAIGHMTA-GGTVDEPISRHPTK---RTHMAVHP-----MGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIR 236 (325)
T ss_dssp EEEEEEEEESCCCC-CEEEECCEEECSSC---TTCEEECT-----TSBCCEEEEEEEEEC-SSEEEEEEEESCCCTTHHH
T ss_pred eEEEEEEEeCCCCC-CCEEeeeeeECCCC---CEEEEECC-----CCeeEEEEEEEeEEc-CCeEEEEEEECCCCcHHHH
Confidence 99999999999987 89999999874322 22333332 479999999999997 6899999999999999999
Q ss_pred HHHHhcCCCceeCCCCCCCCccccccccCCCCCCcCCCcccccccccccccccCcCcccccccccccccceeeccCCchh
Q 023907 159 VHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238 (275)
Q Consensus 159 ~hla~~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LHa~~l~f~~~~~~ 238 (275)
+||++ +||||+||.+||+.... .......+... .....+++|||++|.|+||
T Consensus 237 vhla~-lG~PI~GD~~Yg~~~~~----------~~~~~~~~~~~--------------~~~~~r~~LHA~~L~f~hP--- 288 (325)
T 1v9f_A 237 VHMAH-ITHPLVGDPVYGGRPRP----------PKGASEAFIST--------------LRKFDRQALHATMLRLYHP--- 288 (325)
T ss_dssp HHHHH-TTCCBTTCTTTTCCCCC----------CTTCCHHHHHH--------------HHHCCSCSEEEEEEEEECT---
T ss_pred HHHHh-CCCceeCChhhCCcccc----------ccccchhhhhh--------------ccCCcChhhheeeeEeeCC---
Confidence 99997 99999999999964210 00000000000 0013578999999999998
Q ss_pred hhhhhccCCCCCCCCccEEEEcCCchHHHHHHHHhc
Q 023907 239 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274 (275)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~aplP~~f~~~~~~l~ 274 (275)
.+++.+.|+||+|++|..+++.|+
T Consensus 289 ------------~~~~~~~~~aplp~~~~~~l~~l~ 312 (325)
T 1v9f_A 289 ------------ISGIEMEWHAPIPQDMVELIEVMR 312 (325)
T ss_dssp ------------TTCCEEEEECCCCHHHHHHHHHHH
T ss_pred ------------CCCCEEEEEecCcHHHHHHHHHhc
Confidence 478999999999999999999875
No 3
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=4.1e-43 Score=304.13 Aligned_cols=185 Identities=30% Similarity=0.419 Sum_probs=149.4
Q ss_pred CCccCCCC--CcCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCc
Q 023907 1 MPVQGGIG--IRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRIL 78 (275)
Q Consensus 1 l~v~~g~~--~~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v 78 (275)
|+||++.+ ...++.+.+...+ ..+++|||||++||||||||+|+++++.|+++|.++. +
T Consensus 30 ~~~~~~~~~~~~~tl~~~l~~~~-----~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~--------------v 90 (217)
T 2i82_A 30 LLSVPGRLEEHKDSVMTRIQRDY-----PQAESVHRLDMATSGVIVVALTKAAERELKRQFRERE--------------P 90 (217)
T ss_dssp SBSSCCSSGGGCCBHHHHHHHHC-----TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTC--------------S
T ss_pred CeEeCCCCCCchhHHHHHHHHHC-----CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCC--------------e
Confidence 57887654 4456655555332 3578999999999999999999999999999999977 9
Q ss_pred ceEEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHH
Q 023907 79 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLR 158 (275)
Q Consensus 79 ~K~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR 158 (275)
+|+|+|+|.|.++..+|.|+.||...... +. +..+.. .+++.|.|.|++++....++++++|+|.|||+||||
T Consensus 91 ~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~-~~--~~~v~~----~~gk~a~t~~~vl~~~~~~~slv~~~l~TGR~HQIR 163 (217)
T 2i82_A 91 KKQYVARVWGHPSPAEGLVDLPLICDWPN-RP--KQKVCY----ETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLR 163 (217)
T ss_dssp EEEEEEEEESCCSSSEEEEECCEEECGGG-TT--CEEECT----TTCBCCEEEEEEEEEETTTEEEEEEEESSCCTTHHH
T ss_pred eEEEEEEEecccCCCCcEEecceeecCCC-Cc--EEEEeC----CCCcEEEEEEEEEEECCCCeEEEEEEECCCCcHHHH
Confidence 99999999999988889999998764211 11 122221 247899999999998733389999999999999999
Q ss_pred HHHHhcCCCceeCCCCCCCCccccccccCCCCCCcCCCcccccccccccccccCcCcccccccccccccceeeccCCchh
Q 023907 159 VHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 238 (275)
Q Consensus 159 ~hla~~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LHa~~l~f~~~~~~ 238 (275)
+||++ +||||+||.+||..... ....+++|||++|.|+||
T Consensus 164 ~hla~-lG~PIvGD~~Yg~~~~~------------------------------------~~~~r~~LHa~~l~f~hP--- 203 (217)
T 2i82_A 164 VHMLA-LGHPILGDRFYASPEAR------------------------------------AMAPRLLLHAEMLTITHP--- 203 (217)
T ss_dssp HHHHH-TTCCBTTCTTTSCHHHH------------------------------------HTCSSCCEEEEEEEEECT---
T ss_pred HHHHH-CCCcEECccccCCcccc------------------------------------CCCCCceeeeeEeEEcCC---
Confidence 99996 99999999999964210 003479999999999998
Q ss_pred hhhhhccCCCCCCCCccEEEEcCCc
Q 023907 239 IQKVQLSSGCDVSKLETLKLVAPLP 263 (275)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~aplP 263 (275)
.+++.+.|+||+|
T Consensus 204 ------------~~~~~~~~~ap~p 216 (217)
T 2i82_A 204 ------------AYGNSMTFKAPAD 216 (217)
T ss_dssp ------------TTCCEEEEECCCC
T ss_pred ------------CCCCEEEEEecCC
Confidence 4789999999998
No 4
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.97 E-value=1.2e-32 Score=233.49 Aligned_cols=147 Identities=22% Similarity=0.296 Sum_probs=105.6
Q ss_pred CCccCCCCC-cCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcc
Q 023907 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79 (275)
Q Consensus 1 l~v~~g~~~-~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~ 79 (275)
|+||++.+. ..++.+++. ...+++|||||++||||||||+|+++++.|+++ ++. ++
T Consensus 22 ~~~~~~~~~~~~tl~~~l~-------~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~--------------v~ 78 (189)
T 2oml_A 22 VLPQFTDEAGRKTLKEFIP-------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GKR--------------TG 78 (189)
T ss_dssp BCSCSSCCTTCBCGGGTCC-------CSSCEESSCCCTTCEEEEEEESCHHHHHHHHST--TSC--------------CC
T ss_pred CEecCCCCCCCCCHHHHcC-------CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCc--cCC--------------Cc
Confidence 577876553 445544432 136899999999999999999999999999987 333 99
Q ss_pred eEEEEEEecccCCCc-cEEeccceeeeccCCce--eeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhH
Q 023907 80 RWYWALVVGTPRCSK-GVISAPLGKVVVDNGKS--DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 156 (275)
Q Consensus 80 K~Y~alv~G~~~~~~-g~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQ 156 (275)
|+|+|+|.|.++... +.++.++.. +++.. ..+..... ....+.|.|+++.....++|+++|+|.|||+||
T Consensus 79 K~Y~a~v~G~~~~~~~~~i~~~i~~---~~~~~~~~~~~~~~~----~~~~~~t~~~v~~~~~~~~slv~~~l~TGR~HQ 151 (189)
T 2oml_A 79 KIYYVQVEGIPTQDALEALRNGVTL---NDGPTLPAGAELVDE----PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 151 (189)
T ss_dssp EEEEEEEESCCCHHHHHHHHHCCEE---TTEECCCCEEEEECC----CTTCCCCSSCCC-CTTSCEEEEEEEESCCCTTH
T ss_pred EEEEEEEcCCCCHHHHHHHHcCcee---CCceeeeeEEEEecc----cccccccccccccccCCCcEEEEEEEeeCCCHH
Confidence 999999999987644 345555432 12211 11111111 012346777777765347899999999999999
Q ss_pred HHHHHHhcCCCceeCCCCCCCC
Q 023907 157 LRVHCAEVLGTPIVGDYKYGWQ 178 (275)
Q Consensus 157 IR~hla~~lG~PIvGD~~Yg~~ 178 (275)
||+||++ +||||+||.+||..
T Consensus 152 IRvhla~-lG~PI~gD~~Y~~g 172 (189)
T 2oml_A 152 VRRMTAH-VGFPTLRLIRYAMG 172 (189)
T ss_dssp HHHHHHH-TTCCEEEEEEEEET
T ss_pred HHHHHHH-cCCcCcceEEEEEC
Confidence 9999997 99999999999854
No 5
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.96 E-value=3.7e-31 Score=228.97 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=98.5
Q ss_pred CCccCCCCC-cCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcc
Q 023907 1 MPVQGGIGI-RRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQ 79 (275)
Q Consensus 1 l~v~~g~~~-~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~ 79 (275)
|+||++.+. ..++.+++ . ...+++|||||++||||||||+|+++++.|++++ +. ++
T Consensus 50 l~~~~~~~~~~~tl~~~l----~---~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~~--~~--------------v~ 106 (217)
T 2olw_A 50 VLPQFTDEAGRKTLKEFI----P---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG--KR--------------TG 106 (217)
T ss_dssp BCSCSSCCTTSBCGGGTC----C---CCSCEESSCCCTTCEEEEEEESCHHHHHHHHCTT--CC--------------CC
T ss_pred CEeccCCCCCCccHHHHh----C---cCCceECCCCCCCCeeEEEEEcCHHHHHHHHccc--cc--------------CC
Confidence 467875542 44544433 2 1368999999999999999999999999999873 33 99
Q ss_pred eEEEEEEecccCCCc-cEEeccceeeeccCCce--eeEEEecCCCCCCCcceEEEEEEeeec-CCcEEEEEEEeCcCchh
Q 023907 80 RWYWALVVGTPRCSK-GVISAPLGKVVVDNGKS--DRITVVNNDQIMSAQHAVTRYQVIKPS-CHGYTWLKLSPLTGRKH 155 (275)
Q Consensus 80 K~Y~alv~G~~~~~~-g~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~k~a~t~~~~l~~~-~~~~slv~~~~~TGR~H 155 (275)
|+|+|+|.|.++... +.++.++.. ++|.. ..+.+.... ..+.+.+..+... ..++|+++|+|.|||+|
T Consensus 107 K~Y~A~V~G~~~~~~~~~i~~~i~~---~~g~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~slv~~~l~TGRtH 178 (217)
T 2olw_A 107 KIYYVQVEGIPTQDALEALRNGVTL---NDGPTLPAGAELVDEP-----AWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 (217)
T ss_dssp EEEEEEEESCCCHHHHHHHHHCCEE---TTEECCCCEEEEECCC-----TTCCCCSSCCC-CCSSCEEEEEEEESCCCTT
T ss_pred EEEEEEEccCCCHHHHHHHhCCEEe---CCCcccceEEEEecCC-----ccccccccceeccCCCCcEEEEEEECcCCCH
Confidence 999999999987654 344444431 12211 111111110 0011111112121 14689999999999999
Q ss_pred HHHHHHHhcCCCceeCCCCCCCC
Q 023907 156 QLRVHCAEVLGTPIVGDYKYGWQ 178 (275)
Q Consensus 156 QIR~hla~~lG~PIvGD~~Yg~~ 178 (275)
|||+||++ +||||+||.+||..
T Consensus 179 QIRvhla~-lG~PIvgD~rY~~g 200 (217)
T 2olw_A 179 QVRRMTAH-VGFPTLRLIRYAMG 200 (217)
T ss_dssp HHHHHHHH-TTCCEEEEEEEEET
T ss_pred HHHHHHHH-CCCcEeCCEEEEEC
Confidence 99999997 99999999999854
No 6
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.95 E-value=4e-29 Score=218.44 Aligned_cols=136 Identities=17% Similarity=0.135 Sum_probs=97.0
Q ss_pred CCccCCCCCcCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcce
Q 023907 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80 (275)
Q Consensus 1 l~v~~g~~~~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K 80 (275)
|+||++.+...++.+++. ......+++|||||++|||+||||+|++++..+.. .++. ++|
T Consensus 74 ~~~~~~~~~~~tl~~~l~----~~~~~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~--~~~~--------------v~K 133 (234)
T 1ksk_A 74 YVCSTDDPDHPTVLYFLD----EPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRHH--------------CEK 133 (234)
T ss_dssp CBSSSSCSSSCBGGGGCC----CTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSC--------------CCE
T ss_pred CEeCCCCCCCCcHHHHhh----hhhcCCeeEcCCCCCCCeeEEEEEcCHHHHHHHhC--CCCC--------------CCe
Confidence 578877665555554433 22224689999999999999999999998887765 3333 999
Q ss_pred EEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHHHH
Q 023907 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160 (275)
Q Consensus 81 ~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR~h 160 (275)
+|+|+|.|.++... ++.+.. | +.+ .+ .....++|. |++++ .++++|+|.|||+||||+|
T Consensus 134 ~Y~a~v~g~~~~~~--i~~~~~------g----~~~-~~-~~~~~~~a~--~~~~~-----~s~~~~~l~tGR~HQIR~h 192 (234)
T 1ksk_A 134 TYLVTLESPVADDT--AEQFAK------G----VQL-HN-EKDLTKPAV--LEVIT-----PTQVRLTISEGRYHQVKRM 192 (234)
T ss_dssp EEEEEESSCCCTTH--HHHHHH------C----CCC-TT-CSSCCCCCE--EEEEE-----TTEEEEEESCCCTTHHHHH
T ss_pred EEEEEEccCCCHHH--HHHHHC------C----eEE-CC-CCcccceEE--EEEeC-----CeEEEEEEccCCCHHHHHH
Confidence 99999999987642 333211 1 001 00 001245554 56664 4799999999999999999
Q ss_pred HHhcCCCceeCCCCCCCC
Q 023907 161 CAEVLGTPIVGDYKYGWQ 178 (275)
Q Consensus 161 la~~lG~PIvGD~~Yg~~ 178 (275)
|++ +||||+||.+|+..
T Consensus 193 ~~~-lG~pi~gd~ry~~g 209 (234)
T 1ksk_A 193 FAA-VGNHVVELHRERIG 209 (234)
T ss_dssp HHH-TTCCEEEEEEEEET
T ss_pred HHH-cCCeEeeeEEEEEC
Confidence 996 99999999999643
No 7
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.94 E-value=4e-28 Score=213.32 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=94.4
Q ss_pred CCccCCCCCcCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcce
Q 023907 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80 (275)
Q Consensus 1 l~v~~g~~~~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K 80 (275)
|+||++.+...++.+++... ....+++|||||++||||||||+|++++..+.. .++ .++|
T Consensus 73 ~~~~~~~~~~~tl~~~l~~~----~~~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~--~~~--------------~v~K 132 (243)
T 1vio_A 73 CVCSNDDGDYPTIYQFFDYP----LAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITS--PKH--------------HCEK 132 (243)
T ss_dssp CBSSCCC--CCBGGGGSCTT----GGGGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTS--------------CCCE
T ss_pred CEeCCCCCCCCcHHHHHhHH----hcCCEeEccCCCCCCeEEEEEEECHHHHHHHhC--CCC--------------CCCE
Confidence 57787655455554443321 223689999999999999999999998777654 333 3999
Q ss_pred EEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHHHH
Q 023907 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160 (275)
Q Consensus 81 ~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR~h 160 (275)
+|+|+|.|.++.. .++.+.. | +.+... ...+++|. |++++ .++++|+|.|||+||||+|
T Consensus 133 ~Y~a~v~g~~~~~--~i~~~~~------g----~~~~~~--~~~~~~a~--~~~l~-----~sl~~~~l~tGR~HQIR~h 191 (243)
T 1vio_A 133 TYLVTLADPVEEN--YSAACAE------G----ILLRGE--KEPTKPAK--LEILD-----DYNVNLTISEGRYHQVKRM 191 (243)
T ss_dssp EEEEEESSCCCTT--HHHHHHH------C----CCCTTC--SSCCCCCE--EEECS-----SSEEEEEESCCCTTHHHHH
T ss_pred EEEEEEeCCCCHH--HHHHHhC------C----eEECCC--CccceeEE--EEEeC-----CEEEEEEEccCCcHHHHHH
Confidence 9999999998764 2333321 1 011110 01245565 45554 5899999999999999999
Q ss_pred HHhcCCCceeCCC--CCCCC
Q 023907 161 CAEVLGTPIVGDY--KYGWQ 178 (275)
Q Consensus 161 la~~lG~PIvGD~--~Yg~~ 178 (275)
|++ +||||+||. .||..
T Consensus 192 l~~-lG~pI~gd~r~~~G~~ 210 (243)
T 1vio_A 192 FAA-LGNKVVGLHRWKIGDV 210 (243)
T ss_dssp HHH-TTCCEEEEEEEEETTE
T ss_pred HHH-CCCeEcccEEEEECCE
Confidence 996 999999999 55643
No 8
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.91 E-value=2.3e-25 Score=194.12 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=93.2
Q ss_pred CCccCCCCCcCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcce
Q 023907 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80 (275)
Q Consensus 1 l~v~~g~~~~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K 80 (275)
+++|++.....+|.+++ .. ...+++|||||++||||||||+|.+++..|.+.-.. |+|
T Consensus 25 ~vs~~~~~~~~tv~dll----~~--~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~----------------v~K 82 (237)
T 2gml_A 25 IVSTTEDGERDNIVDFV----NH--SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGND----------------HEK 82 (237)
T ss_dssp CBCCSSSSCSSBHHHHS----CC--SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHH----------------SCE
T ss_pred CEeCCCCCCCCCHHHHh----hc--cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCC----------------CCE
Confidence 35665444445554443 22 347899999999999999999999999999986444 999
Q ss_pred EEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHHHH
Q 023907 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160 (275)
Q Consensus 81 ~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR~h 160 (275)
+|+|+|.|.+++.. ++. + ..|. .+ . +++.+.+.++++. .++++|+|.|||+||||+|
T Consensus 83 ~Y~a~V~G~~~~~~--i~~-l-----~~Gv----~l-~-----~~~~~~a~~~~l~-----~s~l~i~L~tGR~HQIRr~ 139 (237)
T 2gml_A 83 EYLVTVDKPITEEF--IRG-M-----SAGV----PI-L-----GTVTKKCKVKKEA-----PFVFRITLVQGLNRQIRRM 139 (237)
T ss_dssp EEEEEESSCCCHHH--HHH-H-----SSCC----EE-T-----TEECCCCEEEEEE-----TTEEEEEECCCSTTHHHHH
T ss_pred EEEEEEcccCCHHH--HHH-H-----HcCe----Ee-C-----CcccccEEEEEeC-----CEEEEEEEecCCcHHHHHH
Confidence 99999999886532 111 1 1121 11 1 1223334556653 3699999999999999999
Q ss_pred HHhcCCCceeCCCCC
Q 023907 161 CAEVLGTPIVGDYKY 175 (275)
Q Consensus 161 la~~lG~PIvGD~~Y 175 (275)
|++ +||||+||..|
T Consensus 140 ~a~-lG~pV~~L~R~ 153 (237)
T 2gml_A 140 CEH-FGYEVKKLERT 153 (237)
T ss_dssp HHH-TTCCEEEEEEE
T ss_pred HHH-cCCCEeeeEEE
Confidence 997 99999999886
No 9
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.89 E-value=4.5e-24 Score=191.70 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=92.6
Q ss_pred CCccCCCCCcCcHHHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcce
Q 023907 1 MPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQR 80 (275)
Q Consensus 1 l~v~~g~~~~~sl~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K 80 (275)
|++|++.+...++.+++. . ...+++|||||++||||||||+|.+++..|.++... ++|
T Consensus 78 ~~~~~~~~~~~tl~~~l~----~--~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~----------------v~K 135 (290)
T 3dh3_A 78 IVSTTEDGERDNIVDFVN----H--SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGND----------------HEK 135 (290)
T ss_dssp CBCCCCSSCTTBHHHHHT----C--SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGC----------------CCE
T ss_pred cccCCCCCCCCcHHHHhh----c--cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCC----------------cCE
Confidence 467776665556555543 2 567999999999999999999999999998875332 999
Q ss_pred EEEEEEecccCCCccEEeccceeeeccCCceeeEEEecCCCCCCCcceEEEEEEeeecCCcEEEEEEEeCcCchhHHHHH
Q 023907 81 WYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 160 (275)
Q Consensus 81 ~Y~alv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~slv~~~~~TGR~HQIR~h 160 (275)
+|+|+|.|.+++.. +.. + ..|.. + .+. ..+++. ++.+ +.++++|+|.|||+||||+|
T Consensus 136 ~Y~a~V~G~~~~~~--i~~-l-----~~Gv~----l-~~~---~~~~~~--v~~~-----~~~~l~l~l~tGR~HQIR~~ 192 (290)
T 3dh3_A 136 EYLVTVDKPITEEF--IRG-M-----SAGVP----I-LGT---VTKKCK--VKKE-----APFVFRITLVQGLNRQIRRM 192 (290)
T ss_dssp EEEEEESSCCCHHH--HHH-H-----HTCCB----C-SSS---BCCCCE--EEEC-----SSSEEEEEESCCCTTHHHHH
T ss_pred EEEEEECCCCCHHH--HHH-H-----hcCcc----c-CCc---ccceEE--EEEc-----CCeEEEEEEeCCCChHHHHH
Confidence 99999999886532 111 1 11110 0 110 012232 2222 34799999999999999999
Q ss_pred HHhcCCCceeCCCCCC
Q 023907 161 CAEVLGTPIVGDYKYG 176 (275)
Q Consensus 161 la~~lG~PIvGD~~Yg 176 (275)
|++ +||||+++..|.
T Consensus 193 ~~~-lG~pV~~L~R~~ 207 (290)
T 3dh3_A 193 CEH-FGYEVKKLERTR 207 (290)
T ss_dssp HHH-TTCCEEEEEEEE
T ss_pred HHH-cCCeEEEeEEEE
Confidence 997 999999998874
No 10
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=74.15 E-value=2.3 Score=38.24 Aligned_cols=56 Identities=21% Similarity=0.112 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcceEEEEEEe
Q 023907 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87 (275)
Q Consensus 14 ~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K~Y~alv~ 87 (275)
.+.+...-+.....+....+-||-..||||+++-... .++.+.+.+ ..|+|.|.+.
T Consensus 60 ~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~a--Tk~~~~l~~----------------~~K~Y~~~~~ 115 (334)
T 2aus_C 60 HEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERA--TRVVQALLP----------------AGKEYVALMH 115 (334)
T ss_dssp HHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGTT----------------CCEEEEEEEE
T ss_pred HHHHHHHHHHhCcceeccccccCCccceeEEEEeChh--hhhHHHhcc----------------cCcEEEEEEE
Confidence 3444433333345688999999999999999999753 244444444 5799999774
No 11
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=72.81 E-value=4.2 Score=36.37 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcceEEEEEEe
Q 023907 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87 (275)
Q Consensus 14 ~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K~Y~alv~ 87 (275)
.+.+...-+.....++...+.||-..||||+++-.... ++...+.. -.|+|.|.+.
T Consensus 39 ~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~~----------------~~K~Y~a~~~ 94 (327)
T 1k8w_A 39 NDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD----------------SDKRYRVIAR 94 (327)
T ss_dssp HHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT----------------SCEEEEEEEE
T ss_pred HHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHH--hHHHHhcc----------------CCcEEEEEEE
Confidence 44444333333456889999999999999999998653 25555554 5799999774
No 12
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=70.13 E-value=3.3 Score=36.79 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcceEEEEEEe
Q 023907 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87 (275)
Q Consensus 14 ~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K~Y~alv~ 87 (275)
.+.+...-+.....+....+.||-..||||+++-.+.. ++...+.. ..|+|.|.+.
T Consensus 17 ~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~~----------------~~K~Y~a~~~ 72 (309)
T 1r3e_A 17 HDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGT--RILEFYKD----------------LKKVYWVKMR 72 (309)
T ss_dssp HHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTT----------------SCEEEEEEEE
T ss_pred HHHHHHHHHHhccceecccccCCCCcceeEEEEECHHH--hHHHHhCc----------------cCcEEEEEEE
Confidence 44544333333456889999999999999999998643 34444443 5799999774
No 13
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=69.09 E-value=3.2 Score=37.58 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcceEEEEEEe
Q 023907 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87 (275)
Q Consensus 14 ~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K~Y~alv~ 87 (275)
.+.+...-+.....+....+-||-..||||+++-... .++.+.+.. ..|+|.|.+.
T Consensus 80 ~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~a--Tk~~~~l~~----------------~~K~Y~~~~~ 135 (357)
T 2apo_A 80 HEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERA--TKTIPMWHI----------------PPKEYVCLMH 135 (357)
T ss_dssp HHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTTS----------------SCEEEEEEEE
T ss_pred HHHHHHHHHHhCccccccccccCCCceeEEEEEeCHH--HhHHHHhcc----------------CCcEEEEEEE
Confidence 3444433333345688999999999999999999753 244444444 6899999874
No 14
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=65.45 E-value=6.7 Score=36.02 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=36.0
Q ss_pred CCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcceEEEEEEe-cc
Q 023907 25 YSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV-GT 89 (275)
Q Consensus 25 ~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K~Y~alv~-G~ 89 (275)
...+....+-||-..||||+++-... .++...+.. -.|+|.|.+. |.
T Consensus 84 ~~kKvGH~GTLDP~AtGvL~v~iG~a--TKl~~~l~~----------------~~K~Y~a~~~lG~ 131 (400)
T 3u28_A 84 RCEKTGHSGTLDPKVTGCLIVCIDRA--TRLVKSQQG----------------AGKEYVCIVRLHD 131 (400)
T ss_dssp TCSCEEESSCCCTTCEEEEEEEEGGG--GGGHHHHHH----------------SCEEEEEEEEESS
T ss_pred CcCcccccCCCCCCCeEEEEEEEChH--HhHhHHhcC----------------CCcEEEEEEEeCC
Confidence 35678999999999999999999753 334455554 5799999764 44
No 15
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=64.21 E-value=4.9 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCCCCcccccCCCCCceEEEEEeCHHHHHHHHHHHHhccccccccccccccCCcceEEEEEEe
Q 023907 14 DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVV 87 (275)
Q Consensus 14 ~~l~~~~l~~~~~~~~~~vhRLD~~TSGllllAk~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~v~K~Y~alv~ 87 (275)
.+.+...-+.....++...+.||-..||||+++-.+.+ ++.+.+.. ..|+|.|.+.
T Consensus 20 ~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~~----------------~~K~Y~~~~~ 75 (316)
T 1sgv_A 20 HDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERAT--KILGLLTA----------------APKSYAATIR 75 (316)
T ss_dssp HHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTT----------------SCEEEEEEEE
T ss_pred HHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHH--hHHHHhCc----------------CCcEEEEEEE
Confidence 44444333333456899999999999999999998643 34444443 5899999774
No 16
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=27.73 E-value=34 Score=18.09 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=11.7
Q ss_pred cCCchHHHHHHHHhc
Q 023907 260 APLPSHMQRSWDVLN 274 (275)
Q Consensus 260 aplP~~f~~~~~~l~ 274 (275)
|.||+.|..-+++++
T Consensus 1 aelppefaaqlrkig 15 (27)
T 2rod_B 1 AELPPEFAAQLRKIG 15 (27)
T ss_dssp CCCCTHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhC
Confidence 568999988887764
Done!