BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023910
(275 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225428340|ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
Length = 246
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/196 (61%), Positives = 150/196 (76%)
Query: 64 RSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD 123
R + I MRDR QNRKPLQRGRNLSIEAIQAVQ LKRA + L+ VF SK RRLLK D
Sbjct: 32 RGIFTINMRDRSQNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLD 91
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
MIAVL++LL QN CLLALKVF+D+RKE WYKPQVSLYA+MI+V G+NGLF+ V +L YL
Sbjct: 92 MIAVLKQLLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYL 151
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
K E LE E +GFNALL+ L+ F + ++C++LMKT GCEP++SS+R +I GLE+ E
Sbjct: 152 KKETGLELETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPNKSSFRILIKGLESKGE 211
Query: 244 VAFSGIIRQDAFKYYG 259
+ S ++ DA KY+G
Sbjct: 212 LDISATVKLDAQKYFG 227
>gi|297744458|emb|CBI37720.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/189 (62%), Positives = 147/189 (77%)
Query: 71 MRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRE 130
MRDR QNRKPLQRGRNLSIEAIQAVQ LKRA + L+ VF SK RRLLK DMIAVL++
Sbjct: 1 MRDRSQNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQ 60
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
LL QN CLLALKVF+D+RKE WYKPQVSLYA+MI+V G+NGLF+ V +L YLK E LE
Sbjct: 61 LLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLE 120
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250
E +GFNALL+ L+ F + ++C++LMKT GCEP++SS+R +I GLE+ E+ S +
Sbjct: 121 LETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPNKSSFRILIKGLESKGELDISATV 180
Query: 251 RQDAFKYYG 259
+ DA KY+G
Sbjct: 181 KLDAQKYFG 189
>gi|21618227|gb|AAM67277.1| unknown [Arabidopsis thaliana]
Length = 262
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/219 (58%), Positives = 155/219 (70%), Gaps = 16/219 (7%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP---------------LDHV 111
+VI+MRDR +NRKPLQRGR LSIEAIQAVQ LKRA+ P LD V
Sbjct: 35 MVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPAPVPSTSTTSSSSALLDRV 94
Query: 112 FNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG 171
SKFRRLLKFDM+AVLRELLRQN C LALKVFE+IRKE WYKPQV +Y DMI V N
Sbjct: 95 IISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNS 154
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
L + V LY +K+E L EI+ FN LL L+ KL DLV+DCY M+++G EPDR+S+
Sbjct: 155 LMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASF 214
Query: 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGD-LEFLEEDEE 269
R ++ GLE+ E+ S I+RQDA +YYG+ LEF+EEDEE
Sbjct: 215 RVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEE 253
>gi|449454430|ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449473007|ref|XP_004153757.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449517150|ref|XP_004165609.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 249
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/191 (62%), Positives = 142/191 (74%)
Query: 69 IEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVL 128
+ MR +NRKPLQ+GRNLSIEAIQAVQ LKR LD V++SK RRLLKFDM+AVL
Sbjct: 40 VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVL 99
Query: 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS 188
RELLRQN C LALKVFED+RKE WYKPQVSLYAD+I V +NGLF+ V+I+ Y+K E
Sbjct: 100 RELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEAD 159
Query: 189 LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248
L PEI GFNALLK LV L +L ++ Y LMK VGCEPD++S+R VI GLE+ E
Sbjct: 160 LAPEIDGFNALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLR 219
Query: 249 IIRQDAFKYYG 259
++QDA + YG
Sbjct: 220 TVKQDAQRLYG 230
>gi|15242388|ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
gi|9955519|emb|CAC05458.1| putative protein [Arabidopsis thaliana]
gi|332003991|gb|AED91374.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
Length = 712
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/219 (58%), Positives = 154/219 (70%), Gaps = 16/219 (7%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPL---------------DHV 111
+VI+MRDR +NRKPLQRGR LSIEAIQAVQ LKRA+ P D V
Sbjct: 485 MVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRV 544
Query: 112 FNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG 171
SKFRRLLKFDM+AVLRELLRQN C LALKVFE+IRKE WYKPQV +Y DMI V N
Sbjct: 545 IISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNS 604
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
L + V LY +K+E L EI+ FN LL L+ KL DLV+DCY M+++G EPDR+S+
Sbjct: 605 LMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASF 664
Query: 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGD-LEFLEEDEE 269
R ++ GLE+ E+ S I+RQDA +YYG+ LEF+EEDEE
Sbjct: 665 RVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEE 703
>gi|22531104|gb|AAM97056.1| putative protein [Arabidopsis thaliana]
gi|30023740|gb|AAP13403.1| At5g09320 [Arabidopsis thaliana]
Length = 262
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/219 (58%), Positives = 154/219 (70%), Gaps = 16/219 (7%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPL---------------DHV 111
+VI+MRDR +NRKPLQRGR LSIEAIQAVQ LKRA+ P D V
Sbjct: 35 MVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRV 94
Query: 112 FNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG 171
SKFRRLLKFDM+AVLRELLRQN C LALKVFE+IRKE WYKPQV +Y DMI V N
Sbjct: 95 IISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNS 154
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
L + V LY +K+E L EI+ FN LL L+ KL DLV+DCY M+++G EPDR+S+
Sbjct: 155 LMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASF 214
Query: 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGD-LEFLEEDEE 269
R ++ GLE+ E+ S I+RQDA +YYG+ LEF+EEDEE
Sbjct: 215 RVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEE 253
>gi|255546690|ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
gi|223546501|gb|EEF48000.1| conserved hypothetical protein [Ricinus communis]
Length = 248
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 157/227 (69%), Gaps = 3/227 (1%)
Query: 36 SSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAV 95
+SV +S V + + + R ++V+ + + NRK LQ+GRNLSIE+IQAV
Sbjct: 9 ASVTSGQEFSAFTVSKALKSSRIKRRRRRMVMVVNAKGKEDNRKQLQKGRNLSIESIQAV 68
Query: 96 QHLKRAHLHS--NPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWY 153
Q LKRA+ S + LD VF SKF RLLK DM++VLRELLRQNHCLLALKVF+DIRKE WY
Sbjct: 69 QSLKRAYYFSTNSNLDSVFRSKFSRLLKLDMLSVLRELLRQNHCLLALKVFKDIRKEYWY 128
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFKLRDLV 212
KPQVSLY DMI+ +NG F+ VE+L YLKTE N +EPE FNAL L+ F L
Sbjct: 129 KPQVSLYDDMIKAMASNGYFEQVELLCIYLKTETNLIEPETDAFNALFTTLITFNLSGFA 188
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259
++ Y LMK V CEPDR ++R +INGLE+M E + S I+RQDA K+YG
Sbjct: 189 MEFYGLMKAVKCEPDRLTFRILINGLESMGESSASAILRQDAHKFYG 235
>gi|224102763|ref|XP_002312792.1| predicted protein [Populus trichocarpa]
gi|222849200|gb|EEE86747.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/205 (58%), Positives = 152/205 (74%), Gaps = 5/205 (2%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPL-DHVFNSKFRRLLKFDMIAVLRELL 132
R NRKPLQ+GRNLSIEAIQ +Q LK A+ + L D VF SKF RLLKFDM AVLRELL
Sbjct: 12 RSLNRKPLQKGRNLSIEAIQTIQALKLAYNNDKSLLDQVFRSKFSRLLKFDMTAVLRELL 71
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE--NSLE 190
RQNHCLLALKVFEDIR E WYKP+V LY DMIQV +NG + V++L+ YL++E L+
Sbjct: 72 RQNHCLLALKVFEDIRVEHWYKPKVLLYNDMIQVMASNGFIEEVQLLFRYLESEITGDLQ 131
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKT--VGCEPDRSSYRTVINGLEAMEEVAFSG 248
+ FN LL L+ FKL LV++CYE MK+ VGCEPDRS+++ ++NGLE++ E S
Sbjct: 132 FKTDEFNQLLATLISFKLGGLVMECYEWMKSVVVGCEPDRSTFKLLVNGLESIGEFELSV 191
Query: 249 IIRQDAFKYYGDLEFLEEDEEDIAA 273
++RQDA+K+YG+ E +EE IA+
Sbjct: 192 VVRQDAYKFYGESLDFEAEEEGIAS 216
>gi|297811021|ref|XP_002873394.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
gi|297319231|gb|EFH49653.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
Length = 745
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/205 (57%), Positives = 146/205 (71%), Gaps = 9/205 (4%)
Query: 64 RSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP---------LDHVFNS 114
R + I+MRDR +NRKPLQRGR LSIEAIQAVQ LKRA+ P +D V S
Sbjct: 521 RRAMGIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPSPSSSSALVDRVIIS 580
Query: 115 KFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
KFRRLLKFDM+AVLRELLRQN C LALKVFE+IRKE WYKPQV +Y DMI V N L +
Sbjct: 581 KFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLME 640
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234
V LY +K+E L +I+ FN LL L+ KL DLV+DCY M+++G EPDR+S+R +
Sbjct: 641 EVNYLYSAMKSEKGLMADIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRIL 700
Query: 235 INGLEAMEEVAFSGIIRQDAFKYYG 259
+ GLE+ E++ S I+R+DA +YYG
Sbjct: 701 VLGLESNGEMSLSAIVRKDAHEYYG 725
>gi|357164141|ref|XP_003579962.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 233
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 135/207 (65%), Gaps = 4/207 (1%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVF--NSKFRRLLKF 122
+ + I MRDR +NRKP QRGR LS EAIQAVQ LKRA L P ++K RRLLK
Sbjct: 24 TAITITMRDRSKNRKPTQRGRYLSTEAIQAVQSLKRATLSGTPAAGAVATDTKLRRLLKA 83
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
DM+AV REL Q LLALKVFE+IRKE WYKP++ Y D+I V + GL V Y
Sbjct: 84 DMVAVFRELAAQGEALLALKVFEEIRKEHWYKPRLFWYVDLITVLASKGLLSEVSKACSY 143
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
LK E LEP+ GFN LLK L+ + L +DC+ LMK EPDR +YRT+INGLE++
Sbjct: 144 LKREQ-LEPDTDGFNLLLKTLLDAEFTQLTMDCFRLMKLWNSEPDRITYRTLINGLESLG 202
Query: 243 EVAFSGIIRQDAFKYYGDL-EFLEEDE 268
E+ S +R +A YGDL ++L+E+E
Sbjct: 203 EMDLSAKMRLEAENDYGDLWDYLDEEE 229
>gi|38344476|emb|CAE05491.2| OSJNBa0022H21.11 [Oryza sativa Japonica Group]
Length = 257
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 136/205 (66%), Gaps = 5/205 (2%)
Query: 68 VIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVF----NSKFRRLLKFD 123
VI MRDR +NRKP QRGR LS EAIQAVQ LKRA L +P K RRLLK D
Sbjct: 27 VITMRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKAD 86
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
M+AV REL Q LLAL+VFE+IRKE WYKP++ LY D++ V + GL V+ + YL
Sbjct: 87 MVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYL 146
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
K E LEP+ +GFN LLK L+ + L +DC+ LMK +PDR +YRT+I GLE++ E
Sbjct: 147 KREQ-LEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESLGE 205
Query: 244 VAFSGIIRQDAFKYYGDLEFLEEDE 268
+ S I+ +A YGDL+FL+E+E
Sbjct: 206 MGLSADIKLEAQNDYGDLDFLDEEE 230
>gi|116310293|emb|CAH67311.1| OSIGBa0106G07.7 [Oryza sativa Indica Group]
Length = 259
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 136/205 (66%), Gaps = 5/205 (2%)
Query: 68 VIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVF----NSKFRRLLKFD 123
VI MRDR +NRKP QRGR LS EAIQAVQ LKRA L +P K RRLLK D
Sbjct: 29 VITMRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKAD 88
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
M+AV REL Q LLAL+VFE+IRKE WYKP++ LY D++ V + GL V+ + YL
Sbjct: 89 MVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYL 148
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
K E LEP+ +GFN LLK L+ + L +DC+ LMK +PDR +YRT+I GLE++ E
Sbjct: 149 KREQ-LEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESIGE 207
Query: 244 VAFSGIIRQDAFKYYGDLEFLEEDE 268
+ S I+ +A YGDL+FL+E+E
Sbjct: 208 MGLSADIKLEAQNDYGDLDFLDEEE 232
>gi|115458948|ref|NP_001053074.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|113564645|dbj|BAF14988.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|125590727|gb|EAZ31077.1| hypothetical protein OsJ_15174 [Oryza sativa Japonica Group]
Length = 228
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 134/202 (66%), Gaps = 5/202 (2%)
Query: 71 MRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVF----NSKFRRLLKFDMIA 126
MRDR +NRKP QRGR LS EAIQAVQ LKRA L +P K RRLLK DM+A
Sbjct: 1 MRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVA 60
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
V REL Q LLAL+VFE+IRKE WYKP++ LY D++ V + GL V+ + YLK E
Sbjct: 61 VFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKRE 120
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246
LEP+ +GFN LLK L+ + L +DC+ LMK +PDR +YRT+I GLE++ E+
Sbjct: 121 Q-LEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESLGEMGL 179
Query: 247 SGIIRQDAFKYYGDLEFLEEDE 268
S I+ +A YGDL+FL+E+E
Sbjct: 180 SADIKLEAQNDYGDLDFLDEEE 201
>gi|125548701|gb|EAY94523.1| hypothetical protein OsI_16297 [Oryza sativa Indica Group]
Length = 228
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 134/202 (66%), Gaps = 5/202 (2%)
Query: 71 MRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVF----NSKFRRLLKFDMIA 126
MRDR +NRKP QRGR LS EAIQAVQ LKRA L +P K RRLLK DM+A
Sbjct: 1 MRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVA 60
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
V REL Q LLAL+VFE+IRKE WYKP++ LY D++ V + GL V+ + YLK E
Sbjct: 61 VFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKRE 120
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246
LEP+ +GFN LLK L+ + L +DC+ LMK +PDR +YRT+I GLE++ E+
Sbjct: 121 Q-LEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESIGEMGL 179
Query: 247 SGIIRQDAFKYYGDLEFLEEDE 268
S I+ +A YGDL+FL+E+E
Sbjct: 180 SADIKLEAQNDYGDLDFLDEEE 201
>gi|326488207|dbj|BAJ89942.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 147/239 (61%), Gaps = 13/239 (5%)
Query: 33 MMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAI 92
M+SS +A +S ++ P + ++ ++T I MRDRG+NRKP QRGR LS EAI
Sbjct: 1 MLSSPLA----FSPHRLTPSAASVRRSTSST-----ITMRDRGKNRKPTQRGRYLSTEAI 51
Query: 93 QAVQHLKRAHLHSNPLDHVF--NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKE 150
QAVQ LKRA L P + K RRLLK DM+AV REL Q LALKVFE+IRKE
Sbjct: 52 QAVQSLKRATLSGAPAAGAVATDPKLRRLLKADMVAVFRELAAQGEAHLALKVFEEIRKE 111
Query: 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
WYKP++ Y D+I V + GL V YLK E LEP+ GFN LLK L+ +
Sbjct: 112 HWYKPRLFWYVDLITVLASKGLRSEVGKACSYLKREQ-LEPDTDGFNLLLKTLLDAEFTQ 170
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL-EFLEEDE 268
L +DC+ LMK EPDR++Y T++ GLE++ E+ S +R +A YGDL +F EE+E
Sbjct: 171 LTMDCFRLMKLWDSEPDRTTYITLVKGLESLGEMDLSAKMRLEAESDYGDLWDFFEEEE 229
>gi|242076196|ref|XP_002448034.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
gi|241939217|gb|EES12362.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
Length = 216
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 71 MRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP---LDHVFNSKFRRLLKFDMIAV 127
MRDRG+NRKP QRGR LS EAIQAVQ LKRA S P K RRLLK DM+AV
Sbjct: 1 MRDRGKNRKPTQRGRYLSTEAIQAVQSLKRAARRSAPSASTAATVEPKLRRLLKTDMVAV 60
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
REL Q LLA +VFE+IRKE WYKP++ Y D++ V + GL V+ YLK E
Sbjct: 61 FRELAAQGEALLAFQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRIEVDRACSYLKKEQ 120
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
LEP+ +GFN LLK L+ L +DC+ LMK +PDR +Y T+I GLE++ ++ S
Sbjct: 121 -LEPDTEGFNLLLKELLDAGFTQLTMDCFRLMKLWDSDPDRITYTTLIKGLESLGKMELS 179
Query: 248 GIIRQDAFKYYGDLEFLEEDEED 270
IR +A YG L+FL+E E D
Sbjct: 180 AGIRLEAENDYGSLDFLDEVEID 202
>gi|414586768|tpg|DAA37339.1| TPA: hypothetical protein ZEAMMB73_755953 [Zea mays]
Length = 209
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 130/205 (63%), Gaps = 4/205 (1%)
Query: 71 MRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDH---VFNSKFRRLLKFDMIAV 127
MRDR +NRKP QRGR LS EAIQAVQ LKRA L P V K RRLLK DM+AV
Sbjct: 1 MRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGAPAASAAAVVEPKLRRLLKADMVAV 60
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
REL Q LLAL+VFE+IRKE WYKP++ Y D++ V + GL V+ YLK E
Sbjct: 61 FRELAAQGEALLALQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRTEVDRACSYLKREQ 120
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
LEP+ +GFN LLK L+ L +DC+ LMK +PDR +Y T+I GLE++ ++ S
Sbjct: 121 -LEPDTEGFNLLLKALLDSGFTQLTLDCFRLMKLWDSDPDRITYTTLIKGLESLGKMELS 179
Query: 248 GIIRQDAFKYYGDLEFLEEDEEDIA 272
IR +A YG L+FL+E E D A
Sbjct: 180 AGIRLEAENDYGSLDFLDEVEIDEA 204
>gi|224286190|gb|ACN40805.1| unknown [Picea sitchensis]
Length = 274
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 128/207 (61%), Gaps = 2/207 (0%)
Query: 68 VIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAV 127
V MRD+GQNR PL RGR LS EAIQAVQ L+RA L+ F +K RLLK D++AV
Sbjct: 68 VCNMRDKGQNRGPLWRGRILSTEAIQAVQALRRAKGDPQRLEKAFATKIPRLLKKDLLAV 127
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
L+EL RQ+ C LAL+VF+ +RKE WY+P +SL+ADMI + G N + VE + L+ E
Sbjct: 128 LQELQRQDQCDLALQVFKAVRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLELQKE- 186
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
L P+ + ++ + + ++ +ELMK C PD+S++ +I GL+ + E+ +
Sbjct: 187 GLRPDTRVCTEIIGAFIHVGMVQNAMETFELMKQTDCHPDKSTFTVLIQGLQRLGEIDLA 246
Query: 248 GIIRQDAFKYYGD-LEFLEEDEEDIAA 273
+R+ + +Y + LE E+ +++ A
Sbjct: 247 TAVREQSVQYLDEPLEIFEDVSQEVLA 273
>gi|296084249|emb|CBI24637.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 113/197 (57%), Gaps = 3/197 (1%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
RG RKPL R R LS EAIQ VQ LK A S L+ VF+S+ RLLK D++ L EL R
Sbjct: 37 RGGPRKPLWRSRVLSTEAIQVVQSLKLAK-SSIKLEEVFSSRVSRLLKSDLLDTLAELQR 95
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q L LKVFE IRKE WYKP +SLY+DMI + G L + E L+ LK E LEP+
Sbjct: 96 QGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEG-LEPDT 154
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+ + ++ + + + ++ Y LMK GC PD+ + +I LE E + ++++
Sbjct: 155 RVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGEEELAAGVKKE 214
Query: 254 AFKYYG-DLEFLEEDEE 269
+Y +FLEE E+
Sbjct: 215 CEEYVDYPKKFLEEIEK 231
>gi|225434034|ref|XP_002272799.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Vitis vinifera]
Length = 237
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 113/197 (57%), Gaps = 3/197 (1%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
RG RKPL R R LS EAIQ VQ LK A S L+ VF+S+ RLLK D++ L EL R
Sbjct: 32 RGGPRKPLWRSRVLSTEAIQVVQSLKLAK-SSIKLEEVFSSRVSRLLKSDLLDTLAELQR 90
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q L LKVFE IRKE WYKP +SLY+DMI + G L + E L+ LK E LEP+
Sbjct: 91 QGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEG-LEPDT 149
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+ + ++ + + + ++ Y LMK GC PD+ + +I LE E + ++++
Sbjct: 150 RVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGEEELAAGVKKE 209
Query: 254 AFKYYG-DLEFLEEDEE 269
+Y +FLEE E+
Sbjct: 210 CEEYVDYPKKFLEEIEK 226
>gi|147788707|emb|CAN65295.1| hypothetical protein VITISV_017782 [Vitis vinifera]
Length = 303
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 113/197 (57%), Gaps = 3/197 (1%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
RG RKPL R R LS EAIQ VQ LK A S L+ VF+S+ RLLK D++ L EL R
Sbjct: 32 RGGPRKPLWRSRVLSTEAIQVVQSLKLAK-SSIKLEEVFSSRVSRLLKSDLLDTLAELQR 90
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q L LKVFE IRKE WYKP +SLY+DMI + G L + E L+ LK E LEP+
Sbjct: 91 QGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEG-LEPDT 149
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+ + ++ + + + ++ Y LMK GC PD+ + +I LE E + ++++
Sbjct: 150 RVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGEEELAAGVKKE 209
Query: 254 AFKYYG-DLEFLEEDEE 269
+Y +FLEE E+
Sbjct: 210 CEEYVDYPKKFLEEIEK 226
>gi|359482912|ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
gi|297743240|emb|CBI36107.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP--LDHVFNSKFRRLLKFDMIAVLRELLRQ 134
NR PL +GR LSIEAIQA+Q LKRAH +P +D + RL+K D++A L ELLRQ
Sbjct: 38 NRGPLMKGRVLSIEAIQAIQSLKRAH-RGDPTKIDDFLSKTLSRLVKADLLATLNELLRQ 96
Query: 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ 194
+ C LAL+VF +R E WYK ++SLYAD++ G+ + ++ L L+ E S+ + +
Sbjct: 97 DQCDLALRVFSAVRSELWYKTELSLYADLVSALARKGMKEEIDRLICDLEGEGSVRCDDK 156
Query: 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGC-EPDRSSYRTVINGLEAMEEVAFS 247
G L+K ++ + RD V Y LMK GC D R + GL + E+ +
Sbjct: 157 GIVRLVKAVIAAERRDSTVRIYGLMKRSGCGGGDEYVGRVLSRGLRRLGELGVA 210
>gi|255578900|ref|XP_002530303.1| ATP binding protein, putative [Ricinus communis]
gi|223530159|gb|EEF32070.1| ATP binding protein, putative [Ricinus communis]
Length = 244
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 113/197 (57%), Gaps = 4/197 (2%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP-LDHVFNSKFRRLLKFDMIAVLRELL 132
RG RKPL R + +S EAIQA+Q LK A SNP L VFN+K RLLK D++ VL L
Sbjct: 35 RGGPRKPLWRSKRVSTEAIQAIQSLKLAK-SSNPRLHQVFNTKLSRLLKTDLLDVLEILQ 93
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+QN LALKVFE ++KE WYKP ++LY MI++ G N + + E + L+ E L+P+
Sbjct: 94 KQNELDLALKVFEFVQKEIWYKPDLTLYYGMIEMLGKNKMTEMAEGYFSKLEKEG-LKPD 152
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
+ FN ++ + + ++ Y MK GC PD+ ++ +I LE II++
Sbjct: 153 TRAFNEMIGAYLKVGTTEKAMEMYGRMKESGCVPDKLTFVILIRNLEEAGRNDLVDIIKK 212
Query: 253 DAFKYYGDLE-FLEEDE 268
+ Y E FLEE E
Sbjct: 213 ECGDYMDYPEKFLEEVE 229
>gi|224092960|ref|XP_002309772.1| predicted protein [Populus trichocarpa]
gi|222852675|gb|EEE90222.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 111/196 (56%), Gaps = 1/196 (0%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
RG+ R PL R + LS EAIQ +Q LK A + L+ VFNSK RLLK D++ L L
Sbjct: 33 RGKPRPPLWRAKRLSTEAIQVIQSLKLARSSTPRLEEVFNSKLSRLLKTDLLDTLAVLQN 92
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
QN LALKVFE +RKE WYKP + LY MIQ+ G N + + E + L+ E L+P+
Sbjct: 93 QNELDLALKVFEFVRKEVWYKPDILLYHAMIQMVGRNKMVEMAEEFFGKLEKEEGLKPDT 152
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+ F ++ + + D ++ YE MK GC+PD+ ++R +I LE + I+++
Sbjct: 153 RAFTEMIGAYLQVGMIDKAMETYERMKASGCDPDKLTFRILIRNLEDAGKEELVDRIKKE 212
Query: 254 AFKYYG-DLEFLEEDE 268
Y +FLEE E
Sbjct: 213 CGDYMDYPKKFLEEVE 228
>gi|356528924|ref|XP_003533047.1| PREDICTED: uncharacterized protein LOC100788379 [Glycine max]
Length = 238
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP-LDHVFNSKFRRLLKFDMIAVLRELLRQN 135
+R PL +GR LSIEAIQA+Q LKR H + P L + ++ RL+K D++A LRELLRQ
Sbjct: 39 HRTPLVKGRILSIEAIQAIQTLKRLHRTNPPELTSLVSNTLTRLIKSDLLATLRELLRQQ 98
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE--PEI 193
HC +AL+VF +R E Y +SLYA+M Q N + H++ L L +EN ++ +
Sbjct: 99 HCTIALRVFSTLRSE--YGADLSLYAEMAQTLAANDMTDHLDRLILDLASENEIKCGDDH 156
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVG----CEPDRSSYRTVINGLEAMEEVAFS 247
+G +L+K +V + R+ V Y LM G EPD +++GL++ E A +
Sbjct: 157 KGLASLIKAVVAARSRESTVRIYGLMNKSGYGSVTEPDEYVVEVLVSGLKSFGEEALA 214
>gi|449469204|ref|XP_004152311.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449484870|ref|XP_004157003.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 245
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
+G NR PL R S EAIQAVQ LK A ++ ++ V N+K RLLK D+ L EL R
Sbjct: 44 KGSNR-PLGLSRVPSNEAIQAVQSLKLAK-STSKMEDVINTKLGRLLKADLFDALSELQR 101
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
QN L+L+VF+ ++ E+W++P + LY MI + G N + + E ++ L+ ++ LEP+
Sbjct: 102 QNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLR-KDGLEPDT 160
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+ FN ++ + + + V+ Y LM GC PD +++ +I LE E F+ ++++D
Sbjct: 161 RAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNLEKFRE-EFAVVVKKD 219
Query: 254 AFKY 257
+Y
Sbjct: 220 CNEY 223
>gi|356523014|ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799612 [Glycine max]
Length = 240
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 107/193 (55%), Gaps = 20/193 (10%)
Query: 78 RKPLQRGRNLSIEAIQAVQHLKRAHLHSNP-LDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
R PL +GR LSIEAIQA+Q LKR H + P L + ++ RL+K D++A LRELLRQ H
Sbjct: 38 RSPLMKGRILSIEAIQAIQTLKRLHRTNPPNLSSLVSNTLTRLIKSDLLATLRELLRQQH 97
Query: 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG----LFQHVEILYFYLKTENSLEPE 192
C +AL+ F +R E Y +SLYA++I + HV+ L L+ EN E
Sbjct: 98 CTIALRAFSTLRSE--YGADLSLYAEIISALAAAAAAAEMTDHVDRLILDLEAENE---E 152
Query: 193 I-----QGFNALLKCLVGFKLRDLVVDCYELMKTVG----CEPDRSSYRTVINGLEAMEE 243
I +G +L+K +V + R+ V Y LMK G EPD + ++NGL++ E
Sbjct: 153 IKCDDHKGLASLIKAVVAARSRESTVRIYGLMKKSGYGSVTEPDEYVVKVLVNGLKSFGE 212
Query: 244 VAFSGIIRQDAFK 256
A + + QD +K
Sbjct: 213 EALAREL-QDEYK 224
>gi|357513379|ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
gi|355521000|gb|AET01454.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
Length = 239
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 27/249 (10%)
Query: 34 MSSSVAKSASWSDVKVKPWHNTQKQQVTATR-SMLVIEMRDRGQNRKPLQRGRNLSIEAI 92
M+SS+ ++ ++ +KP + + T TR S + + R PL +GR LSIEAI
Sbjct: 1 MASSLHQNPTF----IKPHSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAI 56
Query: 93 QAVQHLKRAHLHSNPLDHVFNSK----FRRLLKFDMIAVLRELLRQNHCLLALKVFEDIR 148
QA+Q LKR + NP RL+K D++A L+ELLRQ LAL+VF +R
Sbjct: 57 QAIQTLKRIN-RINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVR 115
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFNALLKCLVGF 206
E Y ++LYA+M++V G G+++ V+ L ++ + + + +G +L+K ++G
Sbjct: 116 SE--YGADLTLYAEMLKVLGNCGMYEDVDRLIEEIEVGGGIGCDEDPKGVLSLIKAVIGA 173
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEE 266
K RDL+V YE++K RS + V+ E + +V +G FK +GD E +E
Sbjct: 174 KRRDLLVRVYEMLK-------RSGWGEVVEFDEYVVKVLSNG------FKGFGDDELAQE 220
Query: 267 DEEDIAAYC 275
D +C
Sbjct: 221 ILNDYDRFC 229
>gi|388505356|gb|AFK40744.1| unknown [Medicago truncatula]
Length = 263
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 18/219 (8%)
Query: 34 MSSSVAKSASWSDVKVKPWHNTQKQQVTATR-SMLVIEMRDRGQNRKPLQRGRNLSIEAI 92
M+SS+ ++ ++ +KP + + T TR S + + R PL +GR LSIEAI
Sbjct: 1 MASSLHQNPTF----IKPHSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAI 56
Query: 93 QAVQHLKRAHLHSNPLDHVFNSK----FRRLLKFDMIAVLRELLRQNHCLLALKVFEDIR 148
QA+Q LKR + NP RL+K D++A L+ELLRQ LAL+VF +R
Sbjct: 57 QAIQTLKRIN-RINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVR 115
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFNALLKCLVGF 206
E Y ++LYA+M++V G G+++ V+ L ++ + + + +G +L+K ++G
Sbjct: 116 SE--YGADLTLYAEMLKVLGNCGMYEDVDRLIEEIEVGGGIGCDEDPKGVLSLIKAVIGA 173
Query: 207 KLRDLVVDCYELMKTVG----CEPDRSSYRTVINGLEAM 241
K RDL+V YE++K G E D + + NG + +
Sbjct: 174 KRRDLLVRVYEMLKRSGWGEVVEFDEYVVKVLSNGFKGL 212
>gi|449448168|ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449491766|ref|XP_004158997.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 230
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP--LDHVFNSKFRRLLKFDMIAVLRELLRQ 134
NR PL +GR LSIEAIQA+Q LKRA S+P L V ++ RLLK D++A L+ELLRQ
Sbjct: 40 NRGPLVKGRTLSIEAIQAIQSLKRAE-RSDPTKLQQVLSTTLSRLLKADLVATLKELLRQ 98
Query: 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL---EP 191
C LAL+VF I+ E Y+ ++ LYA++ NG + ++ L L + +
Sbjct: 99 ERCALALEVFAVIKSE--YRAELGLYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGD 156
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223
+ +G L+K ++ R+ V Y +M+ G
Sbjct: 157 DDKGLIKLIKAVISGNRRESTVRIYRMMRRKG 188
>gi|297815036|ref|XP_002875401.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
gi|297321239|gb|EFH51660.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
Length = 220
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
NR PL +GR LS EAIQ++Q LKRAH + + RRL+K D+++VLRELLRQ++
Sbjct: 36 NRGPLLKGRILSTEAIQSIQSLKRAHRTGSSISLTLR-PLRRLIKSDLVSVLRELLRQDY 94
Query: 137 CLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
C LA+ V +R E Y P + LYAD++ N F ++ L ++ + + +
Sbjct: 95 CTLAVHVLSTLRSE--YPPLDLVLYADIVNALSRNKEFDEIDRLIGEIEIIDQ-RSDDKA 151
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVG 223
L++ +VG + R+ VV Y L++ G
Sbjct: 152 LAKLIRAVVGAERRESVVRVYTLLRESG 179
>gi|15232255|ref|NP_189412.1| uncharacterized protein [Arabidopsis thaliana]
gi|9294480|dbj|BAB02699.1| unnamed protein product [Arabidopsis thaliana]
gi|49660179|gb|AAT68380.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|60547779|gb|AAX23853.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|332643839|gb|AEE77360.1| uncharacterized protein [Arabidopsis thaliana]
Length = 222
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
NR PL +GR LS EAIQ++Q LKRAH L RRL+K D+I+VLRELLRQ++
Sbjct: 38 NRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLR-PLRRLIKSDLISVLRELLRQDY 96
Query: 137 CLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
C LA+ V +R E Y P + LYAD++ N F ++ L + + + +
Sbjct: 97 CTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQ-RSDDKA 153
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVG 223
L++ +VG + R+ VV Y LM+ G
Sbjct: 154 LAKLIRAVVGAERRESVVRVYTLMRESG 181
>gi|302797539|ref|XP_002980530.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
gi|300151536|gb|EFJ18181.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
Length = 334
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Query: 75 GQNRKPLQRGR-NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ + L R R LS E V L R + + +K RLLK D+ LREL R
Sbjct: 85 GKQKGHLWRTRKTLSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQR 144
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LALKVF +I+KE+WY P + YA M+ GL E L+ +++ + LEPE+
Sbjct: 145 QLEGELALKVFYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPEL 204
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
+ L+ L+ + D V MK GC PD Y+ + GL A+
Sbjct: 205 NTYTEYLRSLIFSRQVDKVHATVREMKEQGCPPDLVVYKVLWVGLNAV 252
>gi|449455076|ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449475090|ref|XP_004154371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449508514|ref|XP_004163333.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 255
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 4/212 (1%)
Query: 59 QVTATRSMLVIEMRDRGQNRKPLQRGRN-LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFR 117
Q + R + + G+ R PL R R + EA+ +Q LKR + S
Sbjct: 42 QPDSRRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVS 101
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
RLLK DM+AVL EL RQ LA+K+F IRK+ WYKP V +Y D+I +
Sbjct: 102 RLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAM 161
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ ++ EN L P+ Q + +++ + + ++ YE MK PD +R ++ G
Sbjct: 162 KLWESMREEN-LFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKG 220
Query: 238 LEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEE 269
L + ++QD + + D + EE
Sbjct: 221 L--LPHPLLRNRVKQDFEELFPDQHVFDPPEE 250
>gi|302790069|ref|XP_002976802.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
gi|300155280|gb|EFJ21912.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
Length = 319
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 1/168 (0%)
Query: 75 GQNRKPLQRGR-NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ + L R R LS E V L R + + +K RLLK D+ LREL R
Sbjct: 66 GKQKGHLWRTRKTLSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQR 125
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LALKVF +I+KE+WY P + YA M+ GL E L+ +++ + LEPE+
Sbjct: 126 QLEGELALKVFYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPEL 185
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
+ L+ L+ + D V MK GC PD Y+ + GL A+
Sbjct: 186 NTYTEYLRSLIFSRQVDKVHATVREMKEQGCPPDLVVYKVLWVGLNAV 233
>gi|168046423|ref|XP_001775673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672946|gb|EDQ59476.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 12/175 (6%)
Query: 71 MRDRGQNRKPLQRGR-NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLR 129
++ +G+ R PL R R +S EA+Q V LKR V + RLLK D++ VL
Sbjct: 189 LKAKGKPRGPLWRQRKGVSKEALQVVFELKRCKGDKQKERVVLQNSASRLLKMDLLMVLE 248
Query: 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL 189
EL RQ C LA +VF+ +RKE+WYKP V LY +M+ FG N L + VE Y ++ E L
Sbjct: 249 ELRRQQECSLAKQVFDMVRKEEWYKPDVFLYREMMDTFGKNKLMEDVEEFYQQMQ-EEGL 307
Query: 190 EPEIQGFNAL-LKCLVGFKLR-DLVVDCYELMKTV---GCEPDRSSYRTVINGLE 239
P NA+ L ++G +R + + YE+ + + G +P+ Y + GL+
Sbjct: 308 AP-----NAMILTEMMGAYIRNNNITRAYEIFEEIEQGGHQPEYVMYEILCRGLK 357
>gi|255552422|ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
gi|223543626|gb|EEF45155.1| conserved hypothetical protein [Ricinus communis]
Length = 258
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 97/216 (44%), Gaps = 8/216 (3%)
Query: 24 LARCDRKGIMMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQR 83
L K I + S + D+ + HN + R G+ R PL R
Sbjct: 16 LQNLTNKPIKQTQLPPNSQALFDLNILNKHNHSHNSFSGLRQY------HDGRPRGPLWR 69
Query: 84 GRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALK 142
G+ L EA+ + LKR LD + RLLK DMIAVL EL RQ LA K
Sbjct: 70 GKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELERQEEVSLATK 129
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
VF+ I+K+ WY P V LY D+I +G L+ +++EN L P+ Q + L++
Sbjct: 130 VFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSEN-LFPDSQMYTELIRG 188
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ ++ YE MK P+ +R ++ GL
Sbjct: 189 FLRDGSPGDAMNIYEDMKKSPDPPEELPFRILLKGL 224
>gi|225434780|ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 1 [Vitis vinifera]
gi|359478900|ref|XP_003632183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 2 [Vitis vinifera]
gi|297745987|emb|CBI16043.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 4/212 (1%)
Query: 59 QVTATRSMLVIEMRDRGQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFR 117
+V + + +L ++ G+ R PL RG+ L EA+ + LKR L S
Sbjct: 39 EVGSYKPLLGSKLYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVL 98
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
RLLK DM+AVL EL RQ LA++VF IRK+ WYKP V LY D+I
Sbjct: 99 RLLKMDMVAVLTELERQEEVSLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAM 158
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ ++ E+ L P+ Q + +++ + + ++ YE MK P+ +R ++ G
Sbjct: 159 QLWESMRKED-LFPDYQTYTEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKG 217
Query: 238 LEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEE 269
L + ++QD + + D + EE
Sbjct: 218 L--LPHPLLRNRVKQDFEEIFPDRHVYDPPEE 247
>gi|358248622|ref|NP_001240168.1| uncharacterized protein LOC100781412 [Glycine max]
gi|255642193|gb|ACU21361.1| unknown [Glycine max]
Length = 246
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 38 VAKSASWSDVKVKPWHNTQKQQVTAT---RSMLVIEMRDRGQNRKPLQRGRNLSIEAIQA 94
V++S + + + W N Q +T+ R +++ +R + R+ R R LS E+I+
Sbjct: 5 VSQSTALWGFQQQRWPNDQTPFLTSNFNRRQVIICGLRSSYKARR---RTRILSKESIEV 61
Query: 95 VQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYK 154
+ LK A +P DHV N+K RLLK D + +L EL RQN L+LKVF IR+E +
Sbjct: 62 IHALKLAR---SP-DHVLNAKLSRLLKPDALNLLDELQRQNQLHLSLKVFHFIREELGHD 117
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
+ LYADMI + G N E L F E L+P+ + + ++ + + D +
Sbjct: 118 TLLQLYADMILLLGRNKRIDMAEEL-FSEALEKGLKPDTRLCSEMIGAYLQLGMADKAMQ 176
Query: 215 CYELMK---TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257
Y MK PD+ ++ +I L+ + + ++QD Y
Sbjct: 177 IYASMKEDWACSSSPDKFTFTILIRYLQKNGQHELAETLKQDCLHY 222
>gi|242059543|ref|XP_002458917.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
gi|241930892|gb|EES04037.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
Length = 523
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 10/186 (5%)
Query: 82 QRGRNLSIEAIQAVQHLKR------AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
+R + + E + AV LKR A H L+ S RLL+ D++AVL ELLRQ+
Sbjct: 324 RRKKEMGKEGLMAVAQLKRLAALPPAGAHPR-LEQFMRSHVSRLLRTDLLAVLAELLRQD 382
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
H +L++K++ +RKE WY+P + Y DM+ + N ++ LK+E+ L +
Sbjct: 383 HVILSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKIDDTRQVWADLKSEDVLFDQ-HT 441
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+ +++ L DL ++ YE M++ P +R ++ GL E+ I+QD
Sbjct: 442 YGDIVRAFCDAGLIDLAMEIYEDMRSSPDPPLSLPFRVILKGLVPYPELREK--IKQDFL 499
Query: 256 KYYGDL 261
+ + D+
Sbjct: 500 ELFPDM 505
>gi|15232674|ref|NP_190271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266318|sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870
gi|5541672|emb|CAB51178.1| putative protein [Arabidopsis thaliana]
gi|26450732|dbj|BAC42475.1| unknown protein [Arabidopsis thaliana]
gi|28950815|gb|AAO63331.1| At3g46870 [Arabidopsis thaliana]
gi|332644692|gb|AEE78213.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 257
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL RG+ L EA+ + LKR LD + RLLK DM+AV+ EL R
Sbjct: 60 GRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELER 119
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+FE I+K++WY+P V +Y D+I + L+ +K EN L P+
Sbjct: 120 QEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN-LFPDS 178
Query: 194 QGFNALLKCLVGFKLRDL----VVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ GF LRD ++ YE M P+ +R ++ GL
Sbjct: 179 QTYTEVIR---GF-LRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223
>gi|108707659|gb|ABF95454.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215767688|dbj|BAG99916.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 8/185 (4%)
Query: 82 QRGRNLSIEAIQAVQHLKR-AHLH----SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
+R + + E + V LKR A L S L+ S RLL+ D++AVL ELLRQ+H
Sbjct: 48 RRKKEMGKEGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDH 107
Query: 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196
LL++K++ +RKE WY+P + Y DM+ + N + ++ LK+E+ L + +
Sbjct: 108 VLLSMKIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQ-HTY 166
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256
+++ L DL ++ YE M++ P +R ++ GL ++ I+QD +
Sbjct: 167 GDIVRAFCDAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGLVPYPDLREK--IKQDFLE 224
Query: 257 YYGDL 261
+ D+
Sbjct: 225 LFPDM 229
>gi|388510802|gb|AFK43467.1| unknown [Lotus japonicus]
Length = 259
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 4/194 (2%)
Query: 64 RSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD 123
+S++V +R + R+P R +S E IQ + LK A L V N K RLL D
Sbjct: 46 KSVIVCGLRASFRKRRP---SRVISKEGIQVIHALKLAKSSEQKLYQVLNEKLTRLLNAD 102
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+ +L EL RQN L+LKVF +R+E + + LY+DMI + G N + E L+ +
Sbjct: 103 ALDLLGELQRQNELHLSLKVFNFLREEPGFDALLPLYSDMILLLGRNKMVGEAEELFSQV 162
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
E L+P+ + F ++ + + ++ Y MK GC PD+ ++ +I LE E
Sbjct: 163 -VEKGLKPDTRMFTEMIGVYLQGGNTEKAMELYRSMKASGCSPDKLTFTILIRSLEKSGE 221
Query: 244 VAFSGIIRQDAFKY 257
++Q+ Y
Sbjct: 222 QELVETLKQECVDY 235
>gi|356538964|ref|XP_003537970.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Glycine max]
Length = 255
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 4/200 (2%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL +G+ L EA+ + KR + + L + RLLK DMIAVL EL R
Sbjct: 58 GRPRGPLWKGKKLIGKEALFVISGFKRFNDDEDKLHKFIKTHVLRLLKMDMIAVLTELER 117
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LAL +F+ ++K+ WYKP LY D+I V L+ ++ EN L P+
Sbjct: 118 QEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMRKEN-LFPDS 176
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
Q + +++ + + ++ YE MK P+ +R ++ GL + ++QD
Sbjct: 177 QTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGL--LPHPLLRNKVKQD 234
Query: 254 AFKYYGDLEFLEEDEEDIAA 273
+ + D + +E A
Sbjct: 235 FEEIFPDSSIYDPPQEIFGA 254
>gi|357112657|ref|XP_003558124.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Brachypodium distachyon]
Length = 248
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 10/186 (5%)
Query: 82 QRGRNLSIEAIQAVQHLKR------AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
+R + + E + AV LKR A H LD RLL+ D++AVL ELLRQ+
Sbjct: 49 RRKKEMGKEGLMAVAQLKRLAALPPAGGHQR-LDQYMRLHVSRLLRTDLLAVLAELLRQD 107
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
H LL++K++ +RKE WY+P + Y DM+ + N ++ LK+E+ L +
Sbjct: 108 HVLLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKIDETRQVWADLKSEDVLFDQ-HT 166
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+ +++ L DL ++ YE M++ P +R ++ GL E+ I+ D
Sbjct: 167 YGDIVRVFCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGLIPYPELREK--IKHDFL 224
Query: 256 KYYGDL 261
+ + D+
Sbjct: 225 ELFPDM 230
>gi|224106373|ref|XP_002314145.1| predicted protein [Populus trichocarpa]
gi|222850553|gb|EEE88100.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKR-AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELL 132
G+ R PL RG+ L EA+ + LKR + LD + RLLK DMIAVL EL
Sbjct: 59 GRPRGPLWRGKKLIGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSELE 118
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
RQ LA+K+F I+K+ WYKP V LY D+I G + L+ ++ E+ L P+
Sbjct: 119 RQEEVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNED-LFPD 177
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + ++ + ++ YE MK P+ +R ++ GL
Sbjct: 178 SQMYTEAIRGYLRDGSPADAMNIYEDMKKSPDPPEELPFRILLKGL 223
>gi|225434377|ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
gi|297745785|emb|CBI15841.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 4/212 (1%)
Query: 59 QVTATRSMLVIEMRDRGQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFR 117
+V + + + ++ G+ R PL RG+ L EA+ + LKR L S
Sbjct: 39 EVASNKPLFGLKHYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVL 98
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
RLLK DMIAVL EL RQ LA++VF +K+ WYKP V LY D+I +
Sbjct: 99 RLLKMDMIAVLTELERQEEVTLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAM 158
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ ++ E+ L P+ Q + +++ + ++ YE MK P+ +R ++ G
Sbjct: 159 QLWESMRKED-LFPDYQTYTEVIRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKG 217
Query: 238 LEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEE 269
L + ++QD + + D + EE
Sbjct: 218 L--LPHPLLRNRVKQDFEEIFPDRHVYDPPEE 247
>gi|125524506|gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 89/201 (44%), Gaps = 15/201 (7%)
Query: 51 PWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKR---AHLHSNP 107
P N ++ T + + RD NR PLQRGR+LS EAI AVQ LKR +
Sbjct: 16 PRANPGRRSARPTPASITCGPRD---NRGPLQRGRSLSTEAILAVQSLKRLTSSDRSPAA 72
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
++ RLLK D++A + EL RQ H LAL R E WY+P +LYA +
Sbjct: 73 AAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPALYATFVSSS 132
Query: 168 -GTNGLFQHVEILY--FYLKTENS-----LEPEIQGFNALLKCLVGFKLRDLVVDCYE-L 218
T V+ L F + E E ++ L++ LV YE
Sbjct: 133 PATEDGAAAVDALVEAFLEEKERGGGFVDGEEDVYKLTRLVRALVAKGRARAAWRVYEAA 192
Query: 219 MKTVGCEPDRSSYRTVINGLE 239
++ GCE D YR + G++
Sbjct: 193 VRMGGCEVDEYMYRVMARGMK 213
>gi|414590513|tpg|DAA41084.1| TPA: hypothetical protein ZEAMMB73_430161 [Zea mays]
Length = 254
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L EA+ A+Q LKR L RLLK D +AVL EL R
Sbjct: 57 GRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELER 116
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+F I+KE WYKP + +Y D+I + +++ ++ EN L P+
Sbjct: 117 QEEVDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKNMEEAMVIWGNMRDEN-LFPDS 175
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ + + ++ YE MK P+ +R ++ GL
Sbjct: 176 QTYAEVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGL 220
>gi|115472667|ref|NP_001059932.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|28564798|dbj|BAC57728.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113611468|dbj|BAF21846.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|215766634|dbj|BAG98696.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199812|gb|EEC82239.1| hypothetical protein OsI_26409 [Oryza sativa Indica Group]
Length = 262
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L EA+ A+Q LKR L RLLK D +AVL EL R
Sbjct: 65 GRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELER 124
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+F I+KE WYKP V +Y D+I +++ + EN L P+
Sbjct: 125 QEEVDLAVKMFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDEN-LFPDA 183
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ + + ++ YE MK P+ +R ++ GL
Sbjct: 184 QTYAEVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGL 228
>gi|226494319|ref|NP_001143431.1| uncharacterized protein LOC100276080 [Zea mays]
gi|195620394|gb|ACG32027.1| hypothetical protein [Zea mays]
Length = 254
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 4/196 (2%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L E++ A+Q LKR L RLLK D +AVL EL R
Sbjct: 57 GRPRGPLWRSKKLIGKESLFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELER 116
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+F I+KE WYKP + +Y D+I + +++ ++ EN L P+
Sbjct: 117 QEEVDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKKMEEAMVIWGNMRDEN-LFPDS 175
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
Q + +++ + + ++ YE MK P+ +R ++ GL + ++QD
Sbjct: 176 QTYAEVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGL--LPHPLLRNRVKQD 233
Query: 254 AFKYYGDLEFLEEDEE 269
+++ + + EE
Sbjct: 234 FEEFFPERHIYDPPEE 249
>gi|449442589|ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 256
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R + + E + V+ LKR + LD +S RLLK D++AVL EL RQNH L +
Sbjct: 58 RRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCM 117
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ +RKE WY+P + Y DM+ + N + + ++ LK E L + F +++
Sbjct: 118 KLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQ-HTFGDIIR 176
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261
+ + +D Y M+ P +R ++ GL E+ ++ D + + D+
Sbjct: 177 AYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPEL--REQVKDDFLELFPDM 234
Query: 262 -------EFLEEDEE 269
+ EEDE+
Sbjct: 235 IVYDPPEDLFEEDED 249
>gi|219886827|gb|ACL53788.1| unknown [Zea mays]
gi|219887537|gb|ACL54143.1| unknown [Zea mays]
gi|414879223|tpg|DAA56354.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879224|tpg|DAA56355.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 248
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 10/186 (5%)
Query: 82 QRGRNLSIEAIQAVQHLKR------AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
+R + + E + V LKR A H L+ S RLL+ D++AVL ELLRQ+
Sbjct: 49 RRKKEMGKEGLMVVAQLKRLAALPPAGGHPR-LEQFMRSHVSRLLRTDLLAVLAELLRQD 107
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
H L++K++ +RKE WY+P + Y DM+ + N ++ LK+E+ L +
Sbjct: 108 HVSLSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQ-HT 166
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+ +++ L DL ++ Y+ M++ P +R ++ GL E+ I+QD
Sbjct: 167 YGDIVRAFCDADLIDLAMEIYDDMRSSPDPPLSLPFRVILKGLVPYPELREK--IKQDFL 224
Query: 256 KYYGDL 261
+ + D+
Sbjct: 225 ELFPDM 230
>gi|125585935|gb|EAZ26599.1| hypothetical protein OsJ_10499 [Oryza sativa Japonica Group]
gi|218192624|gb|EEC75051.1| hypothetical protein OsI_11161 [Oryza sativa Indica Group]
Length = 195
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 90 EAIQAVQHLKR-AHLH----SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVF 144
E + V LKR A L S L+ S RLL+ D++AVL ELLRQ+H LL++K++
Sbjct: 4 EGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSMKIY 63
Query: 145 EDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204
+RKE WY+P + Y DM+ + N + ++ LK+E+ L + + +++
Sbjct: 64 SVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQ-HTYGDIVRAFC 122
Query: 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261
L DL ++ YE M++ P +R ++ GL ++ I+QD + + D+
Sbjct: 123 DAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGLVPYPDLREK--IKQDFLELFPDM 177
>gi|242050490|ref|XP_002462989.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
gi|241926366|gb|EER99510.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
Length = 258
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L EA+ A+Q LKR L RLLK D +AVL EL R
Sbjct: 61 GRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELER 120
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+F I+KE WYKP + +Y D+I + +++ ++ EN L P+
Sbjct: 121 QEEVDLAVKMFRIIQKEDWYKPDIYMYKDVIIALAKCKKMEEAMVIWGNMRDEN-LFPDS 179
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ + + ++ YE MK P+ +R ++ GL
Sbjct: 180 QTYAEVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGL 224
>gi|297815852|ref|XP_002875809.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321647|gb|EFH52068.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 257
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL RG+ L EA+ + LKR L + RLLK DM+AV+ EL R
Sbjct: 60 GRPRGPLWRGKKLIGKEALFVILGLKRLKDDDEKLQKFIKTHVFRLLKLDMLAVIGELER 119
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+FE I+K++WY+P V +Y D+I + L+ +K EN L P+
Sbjct: 120 QEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN-LFPDS 178
Query: 194 QGFNALLKCLVGFKLRDL----VVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ GF LRD ++ YE M P+ +R ++ GL
Sbjct: 179 QTYTEVIR---GF-LRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223
>gi|115434634|ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product [Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa Japonica Group]
gi|113531606|dbj|BAF03989.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 15/201 (7%)
Query: 51 PWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKR---AHLHSNP 107
P N ++ T + + RD NR PLQRGR+LS EAI AVQ LKR +
Sbjct: 16 PRANPGRRSARPTPASITCGPRD---NRGPLQRGRSLSTEAILAVQSLKRLTSSDRSPAA 72
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
++ RLLK D++A + EL RQ H LAL R E WY+P +LYA +
Sbjct: 73 AAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPALYATFVSSS 132
Query: 168 GT--NGLFQHVEILYFYLKTEN------SLEPEIQGFNALLKCLVGFKLRDLVVDCYE-L 218
+G ++ +L+ + E ++ L++ LV YE
Sbjct: 133 PATEDGAAAVDALVEAFLEEKERGGGFVDGEEDVYKLTRLVRALVAKGRARAAWRVYEAA 192
Query: 219 MKTVGCEPDRSSYRTVINGLE 239
++ GCE D YR + G++
Sbjct: 193 VRMGGCEVDEYMYRVMARGMK 213
>gi|356569420|ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 234
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R + + E + + LKR LD S RLLK D++AVL E RQN L +
Sbjct: 33 RRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCV 92
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K+++ +RKE WY+P + Y DM+ + N + + ++ LKTE L + F +++
Sbjct: 93 KLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQ-HTFGDIIR 151
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L +D YE M+ P +R ++ GL
Sbjct: 152 AFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGL 188
>gi|356523434|ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 232
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R + + E + + LKR LD S RLLK D++AVL E RQN L +
Sbjct: 35 RRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFLCV 94
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K+++ +RKE WY+P + Y DM+ + N + + ++ LKTE L + F +++
Sbjct: 95 KLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQ-HTFGDIIR 153
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L +D YE M+ P +R ++ GL
Sbjct: 154 AFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGL 190
>gi|326512702|dbj|BAK03258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L EA+ A+Q LKR L RLLK D +AVL EL R
Sbjct: 54 GRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLREFIKRHVARLLKADKLAVLGELER 113
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q L++K+F I+KE WYKP V +Y D+I ++ +K EN L P+
Sbjct: 114 QEEVDLSVKMFRIIQKEDWYKPDVYMYKDLIISLAKCKKMDEAMDIWGNMKEEN-LFPDS 172
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ + + ++ YE MK P+ +R ++ GL
Sbjct: 173 QTYAEVIRGFLRYGSPSDAMNIYEDMKRSPDPPEELPFRVLLKGL 217
>gi|225436656|ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
Length = 248
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPL--DHVFNSKFRRLLKFDMIAVLRELLRQNHCLL 139
+R + + E + A + LKR L S+P+ D S RLL+ D+++VL E RQ+ L
Sbjct: 50 RRKKEMGKEGLIAAKELKR--LRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFL 107
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
++K+++ +RKE WY+P + Y DM+ + N + ++ LK E L + F +
Sbjct: 108 SMKLYDVVRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLF-DQHTFGDI 166
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVA------FSGI 249
++ + L +D YE M+ P YR ++ GL E E+V F G+
Sbjct: 167 VRAFLDGGLPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGM 226
Query: 250 IRQDAFKYYGDLEFLEEDEE 269
I Y E L EDE+
Sbjct: 227 I------VYDPPEDLFEDED 240
>gi|326531840|dbj|BAK01296.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 229
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 24/208 (11%)
Query: 74 RGQNRKPLQ--------------RGRNLSIEAIQAVQHLKR------AHLHSNPLDHVFN 113
RG +R+ LQ R + + E + AV LKR A H ++++
Sbjct: 8 RGHHRRLLQTLQPASSPSLSIWRRKKEMGKEGLMAVAQLKRLAALPPAGGHQRLVEYM-K 66
Query: 114 SKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF 173
RLL+ D++AVL ELLRQ+H LL++K++ +RKE WY+P + Y DM+ + N
Sbjct: 67 LHVSRLLRTDLLAVLAELLRQDHVLLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKV 126
Query: 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
++ LK+E + + + +++ L DL ++ YE M++ P +R
Sbjct: 127 DETRQVWADLKSEGVMFDQ-HTYGDIVRVFCDAGLIDLAMEFYEDMRSSPEPPLSLPFRV 185
Query: 234 VINGLEAMEEVAFSGIIRQDAFKYYGDL 261
++ GL E+ I+Q+ + + D+
Sbjct: 186 ILKGLIPYPELREK--IKQEFLELFPDM 211
>gi|224059705|ref|XP_002299976.1| predicted protein [Populus trichocarpa]
gi|222847234|gb|EEE84781.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 90 EAIQAVQHLKRAHLHSNP--LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDI 147
E + A + LKR L SNP LD S RLLK D++AVL E RQ+ L +K+++ +
Sbjct: 4 EGLMAAKELKR--LQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDVV 61
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
RKE WY+P + L+ DM+ + N ++ L+ E L + F +++ +
Sbjct: 62 RKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQ-HTFGDIIRAFLDNG 120
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L +D YE M+ P +R ++ GL E+
Sbjct: 121 LPSKAMDIYEEMRQSPDPPISLPFRVILKGLIPFPEL 157
>gi|357127065|ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 257
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 51 PWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKR---AHLHSNP 107
P + + + R+++ RD NR PLQRGR+LS EAI AVQ LKR A
Sbjct: 12 PAPTLRAKLLPGPRTIITCGPRD---NRGPLQRGRSLSTEAIHAVQALKRLTAADRSPPA 68
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
++ RLL+ D++A + EL RQ H LAL R E WY+P LYA +
Sbjct: 69 ATAAASAALGRLLRADLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPELYATFVSSS 128
Query: 168 GTN 170
+N
Sbjct: 129 PSN 131
>gi|357122492|ref|XP_003562949.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 246
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L EA+ A+Q LKR L RLLK D +AVL EL R
Sbjct: 49 GRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLKEFVKRHVARLLKADKLAVLGELER 108
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q L++K+F ++KE WYKP V +Y D+I + ++ ++ E L P+
Sbjct: 109 QEEVDLSVKMFRIVQKEDWYKPDVYMYKDLIIALAKCKKMEEAMEIWGNMRDEK-LFPDS 167
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ + + ++ YE MK P+ +R ++ GL
Sbjct: 168 QTYAEVIRGFLRYGSPSDAMNIYEDMKRSPDPPEELPFRVLLKGL 212
>gi|116830983|gb|ABK28447.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 87 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+S E + A + LKR S LD S RLLK D+++VL E RQN L +K++E
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+R+E WY+P + Y DM+ + N + ++ LK E L + F L++ GF
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVR---GF 116
Query: 207 KLRDLVVDCYELMKTVGCEPDRS---SYRTVINGL 238
+L ++ L + PDR +R ++ GL
Sbjct: 117 LDNELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151
>gi|145336941|ref|NP_176425.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122180316|sp|Q1PFH7.1|PPR89_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62350
gi|91806011|gb|ABE65734.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332195836|gb|AEE33957.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 196
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 87 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+S E + A + LKR S LD S RLLK D+++VL E RQN L +K++E
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+R+E WY+P + Y DM+ + N + ++ LK E L + F L++ GF
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVR---GF 116
Query: 207 KLRDLVVDCYELMKTVGCEPDRS---SYRTVINGL 238
+L ++ L + PDR +R ++ GL
Sbjct: 117 LDNELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151
>gi|147841740|emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera]
gi|296083864|emb|CBI24252.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 90 EAIQAVQHLKRAHLHSNPL--DHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDI 147
E + A + LKR L S+P+ D S RLL+ D+++VL E RQ+ L++K+++ +
Sbjct: 4 EGLIAAKELKR--LRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDVV 61
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
RKE WY+P + Y DM+ + N + ++ LK E L + F +++ +
Sbjct: 62 RKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQ-HTFGDIVRAFLDGG 120
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L +D YE M+ P YR ++ GL
Sbjct: 121 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGL 151
>gi|357438675|ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478662|gb|AES59865.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 232
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNP--LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLL 139
+R + L E + + LKR L S+P LD S RLLK D+++VL E RQ++ L
Sbjct: 31 RRKKELGKEGLIITKELKR--LQSDPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFL 88
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
++K+++ +RKE WY+P + Y DM+ + N + ++ LK E L + F +
Sbjct: 89 SMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGEGVLFDQ-HTFGDI 147
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259
++ + + +D YE M+ P +R ++ GL E+ I+ D + +
Sbjct: 148 VRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREK--IKDDFLEVFP 205
Query: 260 DL 261
D+
Sbjct: 206 DM 207
>gi|162462012|ref|NP_001105250.1| thylakoid assembly8 [Zea mays]
gi|45183621|gb|AAS55479.1| Tha8 [Zea mays]
gi|413947428|gb|AFW80077.1| thylakoid assembly8 [Zea mays]
Length = 263
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKR---AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
NR PLQRGR+LS EAI A+Q LKR A + RLLK D++A + EL R
Sbjct: 38 NRGPLQRGRSLSTEAILAIQSLKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQR 97
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQ 165
Q H LAL R E WY+P +LYA +
Sbjct: 98 QGHWSLALAALHIARAEPWYRPDPALYATFVS 129
>gi|356547293|ref|XP_003542050.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 231
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R + + E + + LKR LD F RLLK D++AVL E RQN L
Sbjct: 33 RRKKEMGKEGLVVAKELKRLRSDLVRLDLFIQPSFSRLLKSDLVAVLVEFQRQNQVFLCT 92
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K+++ + KE WY+P + Y DM+ + N + + ++ LK E L + F +++
Sbjct: 93 KLYDIVWKEIWYRPDMFFYRDMLMMLARNKRVEEAKSVWGDLKEEEVLFDQ-HTFGDIIR 151
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L +D YE M+ P +R ++ GL
Sbjct: 152 AFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGL 188
>gi|45183613|gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKR---AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
NR PLQRGR+LS EAI A+Q LKR A + RLLK D++A + EL R
Sbjct: 38 NRGPLQRGRSLSTEAILAIQSLKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQR 97
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQ 165
Q H LAL R E WY+P +LYA +
Sbjct: 98 QGHWSLALAALHIARAEPWYRPDPALYATFVS 129
>gi|388507400|gb|AFK41766.1| unknown [Medicago truncatula]
Length = 246
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 38 VAKSASW---SDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQA 94
+ + ++W +++ P ++T + AT +V +R +N+KP +S E++Q
Sbjct: 2 ILRPSAWIFQTELLFPPLNSTTNNRSKAT--TVVCGLRS-CKNKKP--PSMVISKESVQV 56
Query: 95 VQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ--- 151
+ LK A L+ V SK RLLK D++ VL EL RQN L+LKV E I ++
Sbjct: 57 IHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAG 116
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+ K + LY+D I + G N + + E + FY E L+P+ + FN ++ + +
Sbjct: 117 YDKLLLPLYSDTILLLGKNKMIEKAEEM-FYEVVEKGLKPDTRLFNEMIGVYLQVGNTEK 175
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257
++ Y MK GC PD ++ +I L E +++++F Y
Sbjct: 176 AMEVYRSMKASGCLPDALTFTILIRNLMNNGENELVETLKKESFDY 221
>gi|297840301|ref|XP_002888032.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
gi|297333873|gb|EFH64291.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
Length = 196
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Query: 87 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+S E + A + LKR LD S RLLK D+++VL E RQN L +K++E
Sbjct: 1 MSKEGLIAAKELKRLQTQLVRLDRFIASHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+R+E WY+P + Y DM+ + N + ++ LK E L + F L++ +
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEGVLFDQ-HTFGDLVRAFLDN 119
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L + Y M+ P +R ++ GL
Sbjct: 120 ELPLEAIRLYGEMRDSPDPPLSLPFRVILKGL 151
>gi|357454525|ref|XP_003597543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486591|gb|AES67794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 246
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 38 VAKSASW---SDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQA 94
+ + ++W +++ P ++T + AT +V +R +N+KP +S E++Q
Sbjct: 2 ILRPSAWIFQTELLFPPLNSTTNNRSKAT--TVVCGLRS-CKNKKP--PSMVISKESVQV 56
Query: 95 VQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ--- 151
+ LK A L+ V SK RLLK D++ VL EL RQN L+LKV E I ++
Sbjct: 57 IHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAG 116
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+ K + LY+D I + G N + + E + FY E L+P+ + FN ++ + +
Sbjct: 117 YDKLLLPLYSDTILLLGKNKMIEKAEEM-FYEVVEKGLKPDTRLFNEMIGVYLQVGNTEK 175
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257
++ Y MK GC PD ++ +I L E +++++F Y
Sbjct: 176 AMEVYRSMKASGCLPDALTFTILIRNLMNNGENELVETLKKESFDY 221
>gi|125600640|gb|EAZ40216.1| hypothetical protein OsJ_24661 [Oryza sativa Japonica Group]
Length = 256
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL R + L EA+ A+Q LKR L RLLK D +AVL EL R
Sbjct: 65 GRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELER 124
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q ++F I+KE WYKP V +Y D+I +++ + EN L P+
Sbjct: 125 QE------EMFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDEN-LFPDA 177
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ + + ++ YE MK P+ +R ++ GL
Sbjct: 178 QTYAEVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGL 222
>gi|224074009|ref|XP_002304213.1| predicted protein [Populus trichocarpa]
gi|222841645|gb|EEE79192.1| predicted protein [Populus trichocarpa]
Length = 190
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 78 RKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHC 137
R PL RGR LS EAI A+Q LKRA + + R+++ D+++++RELLRQ+ C
Sbjct: 13 RGPLVRGRILSTEAILAIQSLKRADNNKSESSKKL-PNLARMIRSDLLSIIRELLRQDLC 71
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF 173
LAL+V +R E + ++LYAD+I N F
Sbjct: 72 SLALQVLSTLRSEYPGQIDLNLYADVIFALSRNKCF 107
>gi|302790153|ref|XP_002976844.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
gi|300155322|gb|EFJ21954.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
Length = 566
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 93/219 (42%), Gaps = 48/219 (21%)
Query: 60 VTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRL 119
V +S L + R R P+ RGR L EAI VQ LKRA ++ V S+ RL
Sbjct: 192 VAEGKSGLRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEMEQVLKSQVSRL 251
Query: 120 LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL 179
LK DM+ VLREL RQN C+LA +E+++ E +GL + E++
Sbjct: 252 LKTDMLEVLRELHRQNDCVLA---YEELQGEML----------------PDGLV-YTELM 291
Query: 180 YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
YL+ E + +D ++ MK +G + ++ T+ LE
Sbjct: 292 TAYLRCERP---------------------NDAIDTFQEMKQLGLTVELKTFTTLAKWLE 330
Query: 240 --AMEEVAFSGIIR-----QDAFKYYGDLEFLEEDEEDI 271
+ E A +G+ R Q FK +ED +
Sbjct: 331 KKGLGEEASAGMQRSRRVAQQGFKALSGFRVFKEDSSSL 369
>gi|302797623|ref|XP_002980572.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
gi|300151578|gb|EFJ18223.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
Length = 1048
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 48/219 (21%)
Query: 60 VTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRL 119
V +S L + R R P+ RGR L EAI VQ LKRA ++ V S+ RL
Sbjct: 192 VAERKSGLRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEMEQVLKSQVSRL 251
Query: 120 LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL 179
LK DM+ VLREL RQN C+LA +E+++ E M+ +GL + E++
Sbjct: 252 LKTDMLEVLRELHRQNDCVLA---YEELQGE------------ML----PDGLV-YTELM 291
Query: 180 YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN--- 236
YL+ E + +D ++ MK +G + ++ T+
Sbjct: 292 TAYLRCERPND---------------------AIDTFQEMKQLGLTVELKTFTTLAKWLE 330
Query: 237 ----GLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDI 271
G EA + S + Q FK +ED +
Sbjct: 331 KKGLGEEASARMQRSRRVAQQGFKALSGFRVFKEDSSSL 369
>gi|302769874|ref|XP_002968356.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
gi|300164000|gb|EFJ30610.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
Length = 161
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 105 SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKV------FEDIRKEQWYKPQVS 158
S L V SK RL+K D++A+L L R + LA +V FE RKE WYKP V
Sbjct: 26 SKALQEVLASKVGRLVKLDLLALLHALQRHDEVDLAFQVSPCFLVFERARKEVWYKPSVP 85
Query: 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF-KLRDLVVDCYE 217
LY DM++ NG + V L+ +K E + EP I F ++ VG + RD + +E
Sbjct: 86 LYRDMLKSLARNGRVEGVYSLFETIKQEKA-EPHIAMFTEVIDIFVGSGRFRD-ALKVFE 143
Query: 218 LMKTVGCEPDRSSYRTVI 235
+MK P+ +YRT+I
Sbjct: 144 MMKESEAPPNVRTYRTII 161
>gi|302765018|ref|XP_002965930.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
gi|300166744|gb|EFJ33350.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
Length = 161
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 105 SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKV------FEDIRKEQWYKPQVS 158
S L V SK RL+K D++A+L L R + LA +V FE RKE WYKP V
Sbjct: 26 SKALQEVLASKVGRLVKLDLLALLHALQRHDEVDLAFQVSPCFLVFERARKEVWYKPSVP 85
Query: 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF-KLRDLVVDCYE 217
LY DM++ NG + V L+ +K E + EP I F ++ VG + RD + +E
Sbjct: 86 LYRDMLKSLARNGRVEGVYSLFETIKQEKA-EPHIAMFTEVIDIFVGSGRFRD-ALKVFE 143
Query: 218 LMKTVGCEPDRSSYRTVI 235
+MK P+ +YRT+I
Sbjct: 144 MMKDSEAPPNVRTYRTII 161
>gi|7940277|gb|AAF70836.1|AC003113_3 F2401.8 [Arabidopsis thaliana]
Length = 281
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 36/195 (18%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R + +S E + A + LKR S LD S RLLK D+++VL E RQN L +
Sbjct: 52 RRKKEMSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCM 111
Query: 142 KV-----------------------------FEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
KV +E +R+E WY+P + Y DM+ + N
Sbjct: 112 KVNWSPPVRKFGCFDLEIGAEMEPKTKCGLLYEVVRREIWYRPDMFFYRDMLMMLARNKK 171
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS--- 229
+ ++ LK E L + F L++ GF +L ++ L + PDR
Sbjct: 172 VDETKKVWEDLKKEEVLFDQ-HTFGDLVR---GFLDNELPLEAMRLYGEMRESPDRPLSL 227
Query: 230 SYRTVINGLEAMEEV 244
+R ++ GL E+
Sbjct: 228 PFRVILKGLVPYPEL 242
>gi|351727605|ref|NP_001238702.1| uncharacterized protein LOC100306428 [Glycine max]
gi|255628511|gb|ACU14600.1| unknown [Glycine max]
Length = 150
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
DMIAVL EL RQ LAL +F+ ++K+ WYKP LY D+I V L+
Sbjct: 2 DMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWES 61
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ EN L P+ Q + +++ + ++ YE MK P+ +R ++ GL
Sbjct: 62 MREEN-LFPDSQTYTEVIRGFLNHGSPADAMNIYEDMKNSPDPPEELPFRILLKGL 116
>gi|302792405|ref|XP_002977968.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
gi|300153989|gb|EFJ20625.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
Length = 478
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 79 KPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCL 138
K R R + EA+Q V L+ + +D + R+LK DM+ VL L +
Sbjct: 278 KEFLRLREFTQEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEE 337
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+ALKVF I KE WY+P LY ++I + F + + N + P F
Sbjct: 338 IALKVFRIIEKESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDA-NEMHPNRHMFVP 396
Query: 199 LLK-CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257
++ C F ++L ++KT G YR +I L+A E+ F+ + D Y
Sbjct: 397 VMSACFDLFDFQNLERFYSRMLKTPGLHLHHLVYRGLIKKLQAAEQEEFAQRVSNDLADY 456
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 16/240 (6%)
Query: 22 LSLARCDRKGIMMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPL 81
++ AR ++ + S A++ S+ VK H + ++A I+ R G+ P
Sbjct: 1 MAQARVAKRTLGFSRIAAQTRSF----VKSRHAVSSELLSARE----IDWRPEGKRMFP- 51
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
S EA+ V +KRA ++ + + R++++D + VL L Q+ L
Sbjct: 52 ------SKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKDQDQVDRVL 105
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
++F+ IR+E WYKP L+ +++ + + + L L E LEP + ++
Sbjct: 106 EIFDVIREEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEK-LEPSEEMLVFPVR 164
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261
++ YE +K +GC+ + Y +I L + E+ + I+ +D K G L
Sbjct: 165 KFASLANFAKCMEIYEAIKAIGCKVCPNFYAFLIAKLTSAGELERAEILFKDLDKGCGSL 224
>gi|302766717|ref|XP_002966779.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
gi|300166199|gb|EFJ32806.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
Length = 468
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 79 KPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCL 138
K R R + EA+Q V L+ + +D + R+LK DM+ VL L +
Sbjct: 268 KEFLRLREFTQEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEE 327
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+ALKVF I KE WY+P LY ++I + F + + N + P F
Sbjct: 328 IALKVFRIIEKESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDA-NEMHPNRHMFVP 386
Query: 199 LLK-CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257
++ C F ++L ++KT G YR +I L+A E+ F+ + D Y
Sbjct: 387 VMSACFDLFDFQNLERFYNRMLKTPGLHLHHLVYRGLIKKLQAAEQEEFAQRVTNDLADY 446
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 16/232 (6%)
Query: 22 LSLARCDRKGIMMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPL 81
++ AR ++ + S A++ S+ VK H + ++A I+ R G+ P
Sbjct: 1 MAQARVAKRALGFSRIAAQTRSF----VKSRHAVSSELLSARE----IDWRPEGKRMFP- 51
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
S EA+ V +KRA ++ + + R++++D + VL L Q+ L
Sbjct: 52 ------SKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKDQDQVDRVL 105
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
++F+ IR+E WYKP L+ +++ + + + L L E LEP + ++
Sbjct: 106 EIFDVIREEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEK-LEPSEEMLVFPVR 164
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
++ YE +K +GC+ + Y +I L + E+ + I+ +D
Sbjct: 165 KFASLANFAKCMEIYEAIKAIGCKVCPNFYAFLIAKLTSAGELERAEILLKD 216
>gi|357462173|ref|XP_003601368.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490416|gb|AES71619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 144
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 75 GQNRKP----LQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRE 130
G KP +R + L E + + LKR LD S RLLK D+++VL E
Sbjct: 24 GSASKPSLSIWRRKKELGKEGLIITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFE 83
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
Q++ L++K+++ +RKE WY+P + Y DM+ + N + ++ LK E
Sbjct: 84 FHGQDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 139
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+ALKVF ++R ++ KP + + ++ F GL + E ++ L+ E LEP++ +NA
Sbjct: 329 MALKVFHEMRSQKC-KPNICTFTALVNAFAREGLCEKAEEIFEQLQ-EAGLEPDVYAYNA 386
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L++ + + LM+ +GCEPDR+SY +++
Sbjct: 387 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 425
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+ALKVF ++R ++ KP + + ++ F GL + E ++ L+ E LEP++ +NA
Sbjct: 291 MALKVFHEMRSQKC-KPNICTFTALVNAFAREGLCEKAEEIFEQLQ-EAGLEPDVYAYNA 348
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L++ + + LM+ +GCEPDR+SY +++
Sbjct: 349 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD 386
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+ALKVF ++R ++ KP + + ++ F GL + E ++ L+ E LEP++ +NA
Sbjct: 221 MALKVFHEMRSQKC-KPNICTFTALVNAFAREGLCEKAEEIFEQLQ-EAGLEPDVYAYNA 278
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L++ + + LM+ +GCEPDR+SY +++
Sbjct: 279 LMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD 316
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+ + +ALK+F ++R ++ KP + Y ++ F GL + E ++ L+ E+ EP+
Sbjct: 265 KASQSYMALKLFNEMRSQKC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGHEPD 322
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +NAL++ + + LM+ +GCEPDR+SY +++
Sbjct: 323 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 367
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
Y +S Y +I ++G G F+ +E L+ L +N L+P++ + + L KL
Sbjct: 459 YATDISTYNILINIYGRAGFFEKMEGLFQSLAAKN-LKPDVVTWTSRLGAYSRKKLYTKC 517
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
++ +E M GC PD + + +++ + +++
Sbjct: 518 LEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQI 549
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+ N + +L+VF ++ K KP + Y ++ F GL + E ++ ++ + EP+
Sbjct: 289 KANQPMSSLRVFREM-KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPD 346
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFS 247
+ +NAL++ L + + LM+ +GCEPDR+SY +++ GL E AF
Sbjct: 347 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQ 406
Query: 248 GIIRQ 252
+ +Q
Sbjct: 407 ELKQQ 411
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+ N + +L+VF ++ K KP + Y ++ F GL + E ++ ++ + EP+
Sbjct: 289 KANQPMSSLRVFREM-KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPD 346
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFS 247
+ +NAL++ L + + LM+ +GCEPDR+SY +++ GL E AF
Sbjct: 347 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQ 406
Query: 248 GIIRQ 252
+ +Q
Sbjct: 407 ELKQQ 411
>gi|302792401|ref|XP_002977966.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
gi|300153987|gb|EFJ20623.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
Length = 234
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R ++S+E + +K+A + L V + RLL+ +++++ +R LA
Sbjct: 44 RRIPSMSLETVSVATMMKKAKGDPDRLKSVLRTSVSRLLREELMSLFWVFVRAKEMDLAE 103
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL--KTENSLEPEIQGFNAL 199
+F IRKE WYKPQ SLY +I + + +E ++ L E L P + F
Sbjct: 104 LIFGLIRKESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTP 163
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPD 227
++ V D + Y+ M C D
Sbjct: 164 IQACVSSTDFDACMTLYDRMHASTCRKD 191
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
+ +LKVF ++ K KP + Y ++ F GL + E ++ ++ + EP++ +N
Sbjct: 287 MSSLKVFNEM-KTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPDVYAYN 344
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIRQ 252
AL++ L + + LM+ +GCEPDR+SY +++ GL E AF + +Q
Sbjct: 345 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQ 404
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+ +ALKVF ++ + KP + Y ++ F GL + E ++ ++ E LEP+
Sbjct: 279 KDGKSFMALKVFNEMLSHKC-KPNICTYTALVNAFAREGLCEKAEEVFEQMQ-EAGLEPD 336
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ +NAL++ + + LM+ +GCEPDR+SY +++
Sbjct: 337 VYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVD 380
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 113 NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
+SK+ RL ++ L + +++ ALK+FE +RK+ WY+P+ Y ++ + G
Sbjct: 84 SSKYNRLWPKAVLEALDDAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQ 143
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSY 231
+ +L+ ++TE L P I + AL+ L + MK+V C+PD +Y
Sbjct: 144 PEEARLLFEVMQTE-GLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTY 202
Query: 232 RTVIN 236
+IN
Sbjct: 203 SVLIN 207
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EAI Q +KR P +N L ++ + + ++ K++ ++R
Sbjct: 247 EAIDVFQRMKRDR--CKPTTETYN------LMINLYG------KASKSYMSWKLYCEMRS 292
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
Q KP + Y ++ F GL + E ++ L+ E+ LEP++ +NAL++
Sbjct: 293 HQC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGYP 350
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIR 251
+ + LM+ +GCEPDR+SY +++ GL + E F + R
Sbjct: 351 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR 397
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216
+S Y +I ++G G + +E L+ LK +N P++ + + + KL ++ +
Sbjct: 474 ISTYNILINIYGKAGFLERIEELFVELKEKN-FRPDVVTWTSRIGAYSRKKLYVKCLEVF 532
Query: 217 ELMKTVGCEPDRSSYRTVINGLEAMEEV 244
E M GC PD + + +++ + E+V
Sbjct: 533 EEMIDSGCAPDGGTAKVLLSACSSEEQV 560
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+ +ALK+F ++ KP + Y ++ F GL + E ++ ++ E LEP+
Sbjct: 272 KAGKSFMALKLFHEMMSHDC-KPNICTYTALVNAFAREGLCEKAEEVFEQMQ-EAGLEPD 329
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +NAL++ + + LM+ +GCEPDR+SY +++
Sbjct: 330 VYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDA 374
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EAI Q +KR P +N L ++ + + ++ K++ ++R
Sbjct: 269 EAIDVFQRMKRDR--CKPTTETYN------LMINLYG------KASKSYMSWKLYCEMRS 314
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
Q KP + Y ++ F GL + E ++ L+ E+ LEP++ +NAL++
Sbjct: 315 HQC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGYP 372
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIR 251
+ + LM+ +GCEPDR+SY +++ GL + E F + R
Sbjct: 373 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR 419
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216
+S Y +I ++G G + +E L+ LK +N P++ + + + KL ++ +
Sbjct: 496 ISTYNILINIYGKAGFLERIEELFVELKEKN-FRPDVVTWTSRIGAYSRKKLYVKCLEVF 554
Query: 217 ELMKTVGCEPDRSSYRTVINGLEAMEEV 244
E M GC PD + + +++ + E+V
Sbjct: 555 EEMIDSGCAPDGGTAKVLLSACSSEEQV 582
>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
+RL ++ L ++QN AL+VFE +R ++WY +VS Y ++ + Q
Sbjct: 80 KRLYPRALLESLDVRIKQNEWESALRVFELVRIQEWYTAEVSTYVKLLTMLARVKQPQAA 139
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTVI 235
L+ +L ++ L P ++ F AL+ L + +E M+ GC PD+ +Y T+I
Sbjct: 140 SNLFDFL-LQDKLRPTLEIFTALITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMI 198
Query: 236 NG 237
G
Sbjct: 199 KG 200
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 15/173 (8%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIR 148
++ + + +K+ SN D + K R L+ A++ + N A +VFE +R
Sbjct: 124 VKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEI-FTALITVFTKSNLLKKAFEVFEQMR 182
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
P Y MI+ GL+ + L+ + E +EP I +N L + G+
Sbjct: 183 LFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREG-VEPTIVTYNTL---IFGYGK 238
Query: 209 RDLVVDC---YELMKTVGCEPDRSSYRTVI------NGLEAMEEVAFSGIIRQ 252
L + LM+ G PD ++ T+I N + ME+ A+ G++ Q
Sbjct: 239 AGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQ-AYEGLLAQ 290
>gi|302766721|ref|XP_002966781.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
gi|300166201|gb|EFJ32808.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
Length = 234
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Query: 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+R ++S+E + +K+A + L V + RLL +++++ +R LA
Sbjct: 44 RRIPSMSLETVSVATMMKKAKGDPDRLKSVLRTSVSRLLTKELMSLFWVFVRAKEMDLAE 103
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL--KTENSLEPEIQGFNAL 199
+F +RKE WYKPQ SLY +I + + +E ++ L E L P + F
Sbjct: 104 LIFGLVRKESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTP 163
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++ V D + Y M C D Y + E
Sbjct: 164 IQACVSSNDFDACMRLYNRMHASTCRKDVRFYMYLTRKFE 203
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+VFE + WY P + A ++ V G Q + +++ E++++ +Q +NA+
Sbjct: 159 ALEVFEWLNLRHWYSPNARMLATILAVLGKAN--QEALAVEIFIRAESTVDNTVQVYNAM 216
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ + V +LM+ GCEPD S+ T+IN +E + EV S
Sbjct: 217 MGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRS 276
Query: 248 GIIRQDAFKY 257
G +R D Y
Sbjct: 277 G-LRPDIITY 285
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
K ++ +L R ++ A K+++ + K Y P + LY MI + + VE +
Sbjct: 840 KSSILLILDAFARVSNIAEAKKIYQGM-KAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMV 898
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
++ E P++ +N++L+ G V Y+ +K G +PD +Y T+I
Sbjct: 899 TEME-EAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLI 952
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
+ ++KVF ++ K KP + Y ++ F GL + E ++ ++ + EP++ +N
Sbjct: 99 MSSMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPDVYAYN 156
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
AL++ L + + LM+ +GCEPDR+SY +++
Sbjct: 157 ALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVD 195
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
+ ++KVF ++ K KP + Y ++ F GL + E ++ ++ + EP++ +N
Sbjct: 297 MSSMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPDVYAYN 354
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
AL++ L + + LM+ +GCEPDR+SY +++
Sbjct: 355 ALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDA 394
>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 399
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
+ A+KVF+++ + K + Y ++ F GL + E ++ ++ + EP++ +N
Sbjct: 101 MSAMKVFKEM-QSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPDVYAYN 158
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIRQ 252
AL++ + + LM+ +GCEPDR+SY +++ GL E F + RQ
Sbjct: 159 ALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQ 218
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
++KVF ++ K KP + Y ++ F GL + E ++ ++ + EP++ +NAL
Sbjct: 442 SMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ-QAGHEPDVYAYNAL 499
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
++ L + + LM+ +GCEPDR+SY +++
Sbjct: 500 MEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDA 537
>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 499
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 113 NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
+ K+ L ++ L E +++N ALK+F +RK+ WY+P+ Y + +V G
Sbjct: 100 SEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQ 159
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSY 231
+L+ + +E L+P I + +L+ +L D E MK+V C+PD ++
Sbjct: 160 PDQASLLFEVMLSEG-LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTF 218
Query: 232 RTVIN 236
+I+
Sbjct: 219 TVLIS 223
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++ KE V +YA MI+ FG G F L+ +K + P++ +NAL
Sbjct: 461 ANELFQEL-KENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCI-PDVYAYNAL 518
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAMEEVA--FSGII 250
+ +V + D + M+ GC PD +S+ ++NGL AME A S I
Sbjct: 519 ITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTI 578
Query: 251 RQDAFKY 257
+ DA Y
Sbjct: 579 KPDAVSY 585
>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 447
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 113 NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
+ K+ L ++ L E +++N ALK+F +RK+ WY+P+ Y + +V G
Sbjct: 50 SEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQ 109
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSY 231
+L+ + +E L+P I + +L+ +L D E MK+V C+PD ++
Sbjct: 110 PDQASLLFEVMLSEG-LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTF 168
Query: 232 RTVIN 236
+I+
Sbjct: 169 TVLIS 173
>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 439
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
++ L E +++N ALK+F +RK+ WY+P+ Y + +V G +L+ +
Sbjct: 61 VLEALDEAIKENRWQSALKIFHLLRKQHWYEPKCKTYTKLFKVLGNCKQPDQASLLFEVM 120
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
+E L+P I + +L+ +L D E MK+V C+PD ++ +I
Sbjct: 121 LSEG-LKPTIDVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172
>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Brachypodium distachyon]
Length = 454
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
RL ++ L + H AL++FE +RK++WY+P+ YA ++ + G
Sbjct: 54 RLWPRAVLEALDSAVASCHWESALEIFELMRKQRWYEPRTRTYARLLMMLGKCRQPGPAA 113
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVIN 236
L+ + +E L P + + AL+ + D + ELMK C+PD ++ +IN
Sbjct: 114 ALFRVMLSEERLAPTVDVYTALVGAYGYSGMLDEALATVELMKGAADCKPDEYTFSILIN 173
>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
Length = 442
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++FE +RK+QWYKP+ YA ++ + G L+ + +E L+P + + AL
Sbjct: 72 ALEIFELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSER-LKPTVDVYTAL 130
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGLEA----------MEEVAFSG 248
+ L D + E MK V C+PD ++ +IN ++E+++ G
Sbjct: 131 VGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLG 190
Query: 249 -----IIRQDAFKYYGDLEFLEEDEEDIAA 273
+I YG LEE E + +
Sbjct: 191 LQCNAVIHNAIIDGYGKAGMLEEMENALTS 220
>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like, partial [Cucumis sativus]
Length = 312
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A +F+++R ++ KP + + ++ GL + E ++ ++ E EP++ +NA
Sbjct: 14 MAQNIFDEMRTQRC-KPNICTFTALVNALAREGLCEKAEEIFEQMQ-EAGYEPDVYAYNA 71
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L++ + + LM+ +GCEPDR+SY +++
Sbjct: 72 LMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 110
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+ +S Y +I V+G G + +E L+ L +N LEP++ + + + KL +
Sbjct: 203 RADISTYNILINVYGRAGFVERMEELFQLLPAKN-LEPDVVTWTSRIGAYSRKKLYKRCL 261
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +E M GC PD + + +++ + E++
Sbjct: 262 ELFEKMIDAGCYPDGGTAKVLLSACSSEEQI 292
>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++FE +RK+QWYKP+ YA ++ + G L+ + +E L+P + + AL
Sbjct: 72 ALEIFELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSER-LKPTVDVYTAL 130
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGLEA----------MEEVAFSG 248
+ L D + E MK V C+PD ++ +IN ++E+++ G
Sbjct: 131 VGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLG 190
Query: 249 -----IIRQDAFKYYGDLEFLEEDEEDIAA 273
+I YG LEE E + +
Sbjct: 191 LQCNAVIHNAIIDGYGKAGMLEEMENALTS 220
>gi|302792757|ref|XP_002978144.1| hypothetical protein SELMODRAFT_417820 [Selaginella moellendorffii]
gi|300154165|gb|EFJ20801.1| hypothetical protein SELMODRAFT_417820 [Selaginella moellendorffii]
Length = 261
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 88 SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR--QNHCLLALKVFE 145
S E+ +Q L+ A LD S RLL D+ VL L+ +N LA K+FE
Sbjct: 70 SRESATVIQLLRSAKKSPAKLDAYLGSHASRLLCKDLQYVLNVFLKNQENDIDLAFKIFE 129
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL-----L 200
IRKE WYKP S Y ++ + + + + L+ N+ + E + +
Sbjct: 130 LIRKESWYKPSESTYMRLVSFYCRAD--ERKKPMRPILELLNTAQGEGVALSEAMLTEPM 187
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS-GIIRQDAFKYYG 259
+C + D + Y LM++ GC+ V GL A +FS +++ +F+ +
Sbjct: 188 RCCILQADFDTCLQFYRLMRSSGCQ--------VHRGLYAYLAKSFSRAGLKEKSFQIFA 239
Query: 260 D 260
D
Sbjct: 240 D 240
>gi|302765999|ref|XP_002966420.1| hypothetical protein SELMODRAFT_407939 [Selaginella moellendorffii]
gi|300165840|gb|EFJ32447.1| hypothetical protein SELMODRAFT_407939 [Selaginella moellendorffii]
Length = 261
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 88 SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR--QNHCLLALKVFE 145
S E+ +Q L+ A LD S RLL D+ VL L+ +N LA K+FE
Sbjct: 70 SRESATVIQLLRSAKKSPAKLDAYLGSHASRLLCKDLQYVLNVFLKNQENDIDLAFKIFE 129
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL-----L 200
IRKE WYKP S Y ++ + + + + L+ N+ + E + +
Sbjct: 130 LIRKESWYKPSESTYMRLVSFYCRAD--ERKKPMRPILELLNTAQGEGVALSEAMLTEPM 187
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
+C + D + Y LM++ GC+ R Y
Sbjct: 188 RCCILQADFDTCLQFYRLMRSSGCQVHRGLY 218
>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++FE +RK+QWYKP+ YA ++ + G L+ + +E L+P + + AL
Sbjct: 72 ALEIFELLRKQQWYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSER-LKPTVDVYTAL 130
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGLEA----------MEEVAFSG 248
+ L D + E MK V C+PD ++ +IN ++E+++ G
Sbjct: 131 VGAYGYSGLLDEALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLG 190
Query: 249 -----IIRQDAFKYYGDLEFLEEDEEDIAA 273
+I YG LEE E + +
Sbjct: 191 LQCNAVIHNAIIDGYGKAGMLEEMENALTS 220
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 28 DRKGIMMSSSVAKSASWSDVKV----KPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQR 83
D + SSS+ + + +KV KP N V A + R G ++ LQR
Sbjct: 7 DPTSLRWSSSIPLTYTTCSLKVLKETKPTSNPPFLFVRAGK-------RSSGSSQNGLQR 59
Query: 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNS-KFRRLLKFDMIAVLRELLRQNHCLLALK 142
+ + + + R + ++ NS K+ L ++ L E +R+N ALK
Sbjct: 60 ------QPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALDEAIRENRYESALK 113
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F +RK+ WY+P+ Y ++ + G + +L+ + +E L P + + AL+
Sbjct: 114 IFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEG-LRPTLDVYTALVSA 172
Query: 203 LVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
D E MK+V C+PD +Y +I
Sbjct: 173 YGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILI 206
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 74 RGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSK-FRRLLKFDMIAVLRELL 132
R R Q L + + + + R ++ NSK + L ++ L E +
Sbjct: 43 RSLKRTSTQSSDALQRDPKKGLSRILRRDAAIKAIERKANSKKYNNLWPKAVLEALDEAI 102
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
++N ALK+F +R++QWY+P+ Y ++ + G + +L+ + +E L+P
Sbjct: 103 QENLWETALKIFGLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEG-LKPS 161
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVIN 236
I + AL+ L + + MK++ C+PD +Y +I+
Sbjct: 162 IDVYTALVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILID 206
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP---LDHVF--------------NSKFRRL 119
NR P + R +E+++ A L +P L + +S ++L
Sbjct: 27 NRSPPKTRRGFRVESLKRSSKPASAELVKDPNKDLSRILRTEAAIRGVHNKAKSSSHKQL 86
Query: 120 LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL 179
++ L + +++ AL++F +RK+ WY+P+ YA ++ + G + +L
Sbjct: 87 WPKALLESLDDAIKRCRSHSALEIFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLL 146
Query: 180 YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT-VGCEPDRSSYRTVI 235
+ + +E L+P + + AL+ L D E MK+ V CEPD +Y +I
Sbjct: 147 FEIMLSEG-LKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTYSILI 202
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 28 DRKGIMMSSSVAKSASWSDVKV----KPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQR 83
D + SSS+ + + +KV KP N V A + R G ++ LQR
Sbjct: 7 DPTSLRWSSSIPLTYTTCSLKVLKETKPTSNPPFLFVRAGK-------RSSGSSQNGLQR 59
Query: 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNS-KFRRLLKFDMIAVLRELLRQNHCLLALK 142
+ + + + R + ++ NS K+ L ++ L E +R+N ALK
Sbjct: 60 ------QPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALDEAIRENRYESALK 113
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F +RK+ WY+P+ Y ++ + G + +L+ + +E L P + + AL+
Sbjct: 114 IFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEG-LRPTLDVYTALVSA 172
Query: 203 LVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
D E MK+V C+PD +Y +I
Sbjct: 173 YGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILI 206
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
LK+F IR E +P V +Y ++ + LF+ + LY +K+E LEP + +N L
Sbjct: 128 GLKMFYRIR-EFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSE-GLEPNVFTYNVL 185
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
LK L D M GC+PD SY TVI+ + + +V
Sbjct: 186 LKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDV 230
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A +F+++R ++ KP + + ++ GL + E ++ ++ E EP++ +NA
Sbjct: 278 MAQNIFDEMRTQRC-KPNICTFTALVNALAREGLCEKAEEIFEQMQ-EAGYEPDVYAYNA 335
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L++ + + LM+ +GCEPDR+SY +++
Sbjct: 336 LMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD 373
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+ +S Y +I V+G G + +E L+ L +N LEP++ + + + KL +
Sbjct: 467 RADISTYNILINVYGRAGFVERMEELFQLLPAKN-LEPDVVTWTSRIGAYSRKKLYKRCL 525
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +E M GC PD + + +++ + E++
Sbjct: 526 ELFEKMIDAGCYPDGGTAKVLLSACSSEEQI 556
>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Brachypodium distachyon]
Length = 613
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 88 SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDI 147
+++A++ Q +K+ +N + MI V + + A+K+F ++
Sbjct: 273 TVKAVEVYQRMKKERCRTNTETYTL-----------MINVYG---KSKQPMSAMKIFNEM 318
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
+ K + Y ++ F GL + E ++ ++ + EP++ +NAL++
Sbjct: 319 -QSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQ-QAGHEPDVYAYNALMEAYSRAG 376
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIRQ 252
+ + LM+ +GCEPDR+SY +++ GL E F + +Q
Sbjct: 377 FPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQ 426
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
RRLL ++ L E + ALKVF+ +R + WY+P V +Y +I + G +
Sbjct: 120 RRLLPRTVLEALHERITALRWDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERA 179
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSSYRTVI 235
L F + P ++ + AL+ D E MK T GC PD +Y +I
Sbjct: 180 HEL-FQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILI 238
Query: 236 NG-LEA---------MEEVAFSGI 249
L A ME++A +GI
Sbjct: 239 KSCLHAYDFERVKYLMEDMARAGI 262
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P V Y +I +G G F +E + TEN +P++ N+ L+ G + +
Sbjct: 263 RPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENC-KPDVWTMNSTLRAFGGSGQIETME 321
Query: 214 DCYELMKTVGCEPDRSSYRTVING-------------LEAMEEVAFSGIIRQ-----DAF 255
CYE + G P+ +Y +++ +E M++ +S I DAF
Sbjct: 322 SCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAF 381
Query: 256 KYYGDLEFLE 265
GDLE +E
Sbjct: 382 GRAGDLEQME 391
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +V+E + WY P + + ++ V G Q + + + E S+E ++ +NA+
Sbjct: 205 AFEVYEWLNLRHWYSPNARMLSTILAVLGKAN--QEPLAVEVFTRAEPSVENTVKVYNAM 262
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ + V + ++LM+ GCEPD S+ T+IN +E + EV S
Sbjct: 263 MGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRS 322
Query: 248 GIIRQDAFKY 257
G +R D Y
Sbjct: 323 G-LRPDIITY 331
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++ K ++ +L R + K++ + K Y P + LY M Q+ + VE
Sbjct: 882 KISKSSILLMLDAFARAGNIFEVKKIYHGM-KAAGYFPSMHLYRVMAQLLCRGKQVRDVE 940
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI-- 235
+ ++ E +P++ +N++LK V Y+ +K G EPD +Y +I
Sbjct: 941 AMLSEME-EAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVM 999
Query: 236 --------NGLEAMEEVAFSGI-IRQDAFK----YYGDLEFLEEDEE 269
GL M+E+ G+ + D +K +G + +E+ EE
Sbjct: 1000 YCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEE 1046
>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
Length = 731
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF ++ K V+ A MI V+G G + E+L +K P++ +N+L
Sbjct: 248 ASKVFAEMMKAGVELTTVTFNA-MIHVYGKAGRTREAELLVTKMKQRKDCCPDVATYNSL 306
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
++ V +LV C E M+ G PD+ ++RT+I+ A
Sbjct: 307 IEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAA 347
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F IR E +P V +Y ++ + FQ +E +Y +K + EP + +N L
Sbjct: 133 ALKMFYRIR-EFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGK-EPNVYTYNIL 190
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
LK L D M GCEPD SY TVI+ + + +V
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKV 235
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V +Y M+ V + +F L + T+N P FN +K L + ++
Sbjct: 422 PNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNC-PPNTVTFNTFIKGLCCSGRVECAIN 480
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+ M+ GC P+ +Y V++GL
Sbjct: 481 LFCQMEQYGCSPNIKTYNEVLDGL 504
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+V+E + WY P + A ++ V G Q + + + E + +Q +NA+
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLATILSVLGKAN--QEALAVEIFARAEAAXGNTVQVYNAM 260
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ V + +LM++ GCEPD S+ T+IN +E + EV S
Sbjct: 261 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 320
Query: 248 GI 249
GI
Sbjct: 321 GI 322
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+ +L L + N LA+++F R E V +Y M+ V+ G F V+ L +
Sbjct: 223 LATILSVLGKANQEALAVEIFA--RAEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLM 280
Query: 184 KTENSLEPEIQGFNALLKCLV--GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
++ EP++ FN L+ + G + +L ++ ++ G +PD +Y T+I+
Sbjct: 281 RSRGC-EPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRE 339
Query: 242 EEVAFSGIIRQDAFKYYGDL 261
+ ++A K Y D+
Sbjct: 340 SNL-------EEAVKVYNDM 352
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K+++ ++ ++ P + LY MI + + VE + ++ +P++ +N++LK
Sbjct: 905 KIYQGMKAAGYF-PTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVA-XFKPDLSIWNSVLK 962
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAFSGI-I 250
G Y+L++ G +PD +Y T+I GL M E+ G+
Sbjct: 963 LYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEP 1022
Query: 251 RQDAFK----YYGDLEFLEEDEE 269
+ D +K +G L+ +E+ EE
Sbjct: 1023 KLDTYKSLISAFGKLQMVEQAEE 1045
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+V+E + WY P + + ++ V G Q + +++ E S +Q +NA+
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLSTILSVLGKAN--QEALAVEVFMRAEPSAGNTVQVYNAM 260
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ + V + +LM+ GC+PD S+ T+IN +E + EV S
Sbjct: 261 MGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRS 320
Query: 248 GIIRQDAFKY 257
G +R D Y
Sbjct: 321 G-LRPDTITY 329
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+L L + N LA++VF +R E V +Y M+ V+ G F V+ L ++
Sbjct: 225 TILSVLGKANQEALAVEVF--MRAEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMR- 281
Query: 186 ENSLEPEIQGFNALLKCLV--GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
E +P++ FN L+ + G + +L ++ ++ G PD +Y T+I+
Sbjct: 282 ERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASN 341
Query: 244 VAFSGIIRQDAFKYYGDLE 262
+ ++A K + D+E
Sbjct: 342 L-------EEAAKVFDDME 353
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++ K ++ +L R + K++ + K Y P + LY M ++ + VE
Sbjct: 880 KISKSSILLMLDAFARAGNIFEVKKIYHGM-KAAGYFPTMHLYRVMARLLSRGKQVRDVE 938
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI-- 235
+ ++ E +P++ +N++LK V + + Y+ +K G EPD +Y T+I
Sbjct: 939 AMLSEME-EAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVM 997
Query: 236 --------NGLEAMEEVAFSGI-IRQDAFK----YYGDLEFLEEDEE 269
G M E+ +G+ + D +K +G + +E+ EE
Sbjct: 998 YCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEE 1044
>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L +L+ + L AL+VF+ +R++ +Y+P+ Y ++ + G +G + L+ + E
Sbjct: 94 TLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM-LE 152
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG----CEPDRSSYRTVING 237
LEP ++ + AL L + +L+ D + ++ T+ C+PD +Y T++
Sbjct: 153 EGLEPTVELYTAL---LAAYTRSNLIDDAFSILDTMKGLPQCQPDVFTYSTLLKA 204
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+V+E + WY P + A ++ V G Q + + + E + +Q +NA+
Sbjct: 146 ALEVYEWLNLRHWYSPNARMLATILSVLGKAN--QEALAVEIFARAEAASGNTVQVYNAM 203
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ V + +LM++ GCEPD S+ T+IN +E + EV S
Sbjct: 204 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 263
Query: 248 GI 249
GI
Sbjct: 264 GI 265
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+ +L L + N LA+++F R E V +Y M+ V+ G F V+ L +
Sbjct: 166 LATILSVLGKANQEALAVEIFA--RAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLM 223
Query: 184 KTENSLEPEIQGFNALLKCLV--GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
++ EP++ FN L+ + G + +L ++ ++ G +PD +Y T+I+
Sbjct: 224 RSRGC-EPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRE 282
Query: 242 EEVAFSGIIRQDAFKYYGDL 261
+ ++A K Y D+
Sbjct: 283 SNL-------EEAVKVYNDM 295
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
RRLL ++ L + + ALKVFE +R + WYKP + +Y +I + G +
Sbjct: 101 RRLLPGTVLEALHDRVAALRWDSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKA 160
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSSYRTVI 235
L F + P +Q + AL+ D + MK T GC+PD +Y +I
Sbjct: 161 HQL-FQAMIDEGCAPNLQSYTALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILI 219
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+V+E + WY P + A ++ V G Q + + + E + +Q +NA+
Sbjct: 171 ALEVYEWLNLRHWYSPNARMLATILSVLGKAN--QEALAVEIFARAEAASGNTVQVYNAM 228
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ V + +LM++ GCEPD S+ T+IN +E + EV S
Sbjct: 229 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 288
Query: 248 GI 249
GI
Sbjct: 289 GI 290
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+ +L L + N LA+++F R E V +Y M+ V+ G F V+ L +
Sbjct: 191 LATILSVLGKANQEALAVEIFA--RAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLM 248
Query: 184 KTENSLEPEIQGFNALLKCLV--GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
++ EP++ FN L+ + G + +L ++ ++ G +PD +Y T+I+
Sbjct: 249 RSRGC-EPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRE 307
Query: 242 EEVAFSGIIRQDAFKYYGDL 261
+ ++A K Y D+
Sbjct: 308 SNL-------EEAVKVYNDM 320
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K+++ + K Y P + LY MI + + VE + ++ +P++ +N++LK
Sbjct: 873 KIYQGM-KAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAR-FKPDLSIWNSVLK 930
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAFSGI-I 250
G Y+L++ G +PD +Y T+I GL M E+ G+
Sbjct: 931 LYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEP 990
Query: 251 RQDAFK----YYGDLEFLEEDEE 269
+ D +K +G L+ +E+ EE
Sbjct: 991 KLDTYKSLISAFGKLQMVEQAEE 1013
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
F A+L ++ N +LA VF+ I KE KP VS Y +I+ + G+ ++ + ++
Sbjct: 218 FSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVF- 276
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDL------VVDCYELMKTVGCEPDRSSYRTVI 235
E +P + +N ++ GF + L +VD ++ +T C PD +Y T+I
Sbjct: 277 ---DEMGCKPNLVTYNTMIN---GFCKKGLMESAMKIVD--QMTETEDCMPDTVTYTTLI 328
Query: 236 NG 237
+G
Sbjct: 329 DG 330
>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
L E + H L AL+VF+ +R++ +Y+P+ Y +I + G +G L F E
Sbjct: 97 LSERIHNKHWLQALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQL-FTTMIEE 155
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
LEP + + ALL + D MK + C+PD +Y T+I
Sbjct: 156 GLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLI 204
>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
Length = 458
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 115 KFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
K +LL ++ +L + +++ ALKVFE +R +QWY+P Y M+++ G
Sbjct: 15 KASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRMLEMLGKCKRPD 74
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSSYRT 233
L F + P + F AL+ L ++ + M T C PD +Y
Sbjct: 75 EAASL-FQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSL 133
Query: 234 VI 235
+I
Sbjct: 134 LI 135
>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 115 KFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
K+ L ++ L + +++N ALK+FE +RK+ WY+P+ Y ++ + G +
Sbjct: 73 KYNNLWPKAVLEALDDAIKENQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPE 132
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRT 233
L F + + L+P I + AL+ D MK + C+PD +Y
Sbjct: 133 EGSFL-FEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSI 191
Query: 234 VIN 236
+IN
Sbjct: 192 LIN 194
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +VFED++K + + S Y MI+ G G + L+ + TE L + G+N L
Sbjct: 254 ACQVFEDMKKRHCRRDEYS-YTIMIRTMGRIGKYDEAVGLFNEMITE-GLTLNVVGYNTL 311
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE-VAFSGII 250
++ L K+ D + + M GC P+ +Y V+N L A + V GI+
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIV 363
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ +FE++ + KP + Y +I G NG + + ++ E L P++ ++ L
Sbjct: 496 AINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTL 553
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
++C + ++ +E M GC+P+ +Y +++ LE A
Sbjct: 554 MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTA 599
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILY--FYLKTENSLEPEIQGFNALLKCLVGF 206
+E+ P V Y+ +++ FG + VE+ Y F +P I +N LL CL
Sbjct: 539 QEKGLNPDVVTYSTLMECFGKT---ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKS 595
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
VD Y MK G PD +Y TV+ L++
Sbjct: 596 GRTAEAVDLYTKMKQQGLTPDSITY-TVLERLQS 628
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
LL+ A+K+FE++ Q KP ++Y +I FG G ++ F + +
Sbjct: 903 LLKAGRSEEAMKIFEEMPDYQC-KPNCAIYNILINGFGKAGNV-NIACDLFKRMIKEGIR 960
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P+++ + L++CL D V +E +K G +PD SY +INGL
Sbjct: 961 PDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGL 1008
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K+ P V Y +I G G L+ +K E+ P FNALL CL
Sbjct: 569 KDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMK-ESGCPPNTVTFNALLDCLCKNDA 627
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
DL + + M + C PD +Y T+I GL
Sbjct: 628 VDLALKMFCRMTIMNCSPDVLTYNTIIYGL 657
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFG-TNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
AL+++E + +QWY + A ++ V G N VEI + K E+ + +Q +NA
Sbjct: 213 ALELYECLTMQQWYATNARMVATILSVLGKANQEGIAVEI---FAKAESVIADTVQVYNA 269
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAF 246
++ + V + + LM+ GCEPD S+ T+IN +E ++EV
Sbjct: 270 MMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGK 329
Query: 247 SGIIRQDAFKY 257
G +R D Y
Sbjct: 330 FG-LRPDIITY 339
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E +KP + ++ +++++ + FQ++ ++Y ++ + L P+ + +N L+
Sbjct: 957 EAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQ-DAGLAPDEETYNTLITMYCRDHRP 1015
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVI 235
+ + MK++G EP R +YR++I
Sbjct: 1016 EEGLSLMHKMKSLGLEPKRDTYRSMI 1041
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLS--IEAIQAVQHL----KRAHLHSNPLDHVFNSKFRR 118
S L++EM +RG + G + + A Q + L K A P +++N
Sbjct: 454 SNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISG 513
Query: 119 LLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
L K M+ R L+ + EQ P +Y +I F N
Sbjct: 514 LCKKKMLPAARNLIEE-------------MLEQNVHPDKYVYTTLIDGFIRNESLDEARK 560
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
++ +++ + + P++ G+NA++K F + + V+C M+ VG PD +Y T+I G
Sbjct: 561 IFEFME-QKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGG 618
>gi|297834132|ref|XP_002884948.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
gi|297330788|gb|EFH61207.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
Length = 394
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS---LYADMIQVFGTNGLFQHVEILYF 181
IAV + +R+ + E+I +EQ P +S A +I ++G G+F++ + ++
Sbjct: 71 IAVYEKTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFD 130
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
+ E + + + FNALL V K DLV + EL + EPD +SY T+I GL
Sbjct: 131 EM-PERNCKRTVLSFNALLNACVNSKKFDLVESIFKELPGKISIEPDVASYNTLIKGL 187
>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2750; Flags: Precursor
gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 486
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L +L+ + L AL+VF+ +R++ +Y+P+ Y ++ + G +G + L+ + E
Sbjct: 94 TLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM-LE 152
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVING 237
LEP ++ + ALL L D + MK+ C+PD +Y T++
Sbjct: 153 EGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKA 204
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+++E + WY P + A ++ V G Q + + + E+S+ +Q +NA+
Sbjct: 198 ALELYECLNLRHWYAPNARMVATILGVLGKAN--QEALAVEIFARAESSVGDTVQVYNAM 255
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAFS 247
+ V + +LM+ GC PD S+ T+IN L+ + EV S
Sbjct: 256 MGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRS 315
Query: 248 GIIRQDAFKY 257
G IR D Y
Sbjct: 316 G-IRPDIITY 324
>gi|357462163|ref|XP_003601363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490411|gb|AES71614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 291
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 60/229 (26%)
Query: 75 GQNRKP----LQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRE 130
G KP +R + L E + + LKR LD S RLLK D+++VL E
Sbjct: 24 GSASKPSLSIWRRKKELGKEGLVITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFE 83
Query: 131 LLRQNHCLLALKV----------------FED---------------------------- 146
RQ++ L++K F+D
Sbjct: 84 FHRQDNVFLSMKALLFMYWCDYMRRLSDGFDDTNEFTLEDLRIFSIGINLKYSFKLEEKK 143
Query: 147 -----------IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
+RKE WY+P + Y DM+ + N + ++ LK E L +
Sbjct: 144 EKVKSFWLYDIVRKEIWYRPDMFFYRDMLVMLARNKRVDETKRVWDDLKGEGVLFDQ-HT 202
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
F +++ + + +D YE M+ P +R ++ GL E+
Sbjct: 203 FGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPEL 251
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 31 GIMMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIE 90
GI SS+A + S KP T+ + + + D GQ+ + +N +
Sbjct: 14 GIFKESSIATAKS-----AKPRSQTKSTKFPSKLKASTASVGDGGQSSNDAKDSKNSKL- 67
Query: 91 AIQAVQHLKRAHLHSNPLDHV---FNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDI 147
Q V+ KR+ S V +++ RRL + + + E+L+ K F+DI
Sbjct: 68 -TQKVEKFKRS-CESESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQ------KKFDDI 119
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
+ E + ++ ++G +G+ +H L+ + E + E ++ FNALL V K
Sbjct: 120 KSEDFV-------IRIMLLYGYSGMAEHAHKLFDEM-PELNCERTVKSFNALLSAYVNSK 171
Query: 208 LRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
D + + EL + +G PD +Y T+I L
Sbjct: 172 KLDEAMKTFKELPEKLGITPDLVTYNTMIKAL 203
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 76/155 (49%), Gaps = 11/155 (7%)
Query: 91 AIQAVQHLKRAHLHSNPLDHVFNSKFRRL-----LKFDMIA---VLRELLRQNHCLLALK 142
+++ L A+++S LD + F+ L + D++ +++ L R+ L
Sbjct: 156 TVKSFNALLSAYVNSKKLDEAMKT-FKELPEKLGITPDLVTYNTMIKALCRKGSMDDILS 214
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+FE++ K ++P + + +++ F LF + ++ +K++N L P I+ +N+ ++
Sbjct: 215 IFEELEK-NGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKN-LSPNIRSYNSRVRG 272
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L K ++ ++MKT G PD +Y +I
Sbjct: 273 LTRNKKFTDALNLIDVMKTEGISPDVHTYNALITA 307
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 109 DHVFN--SKFR-RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQ 165
D VFN SKF +LL+ D + +L + + LLALK F++ K + +V +Y ++
Sbjct: 128 DDVFNVLSKFDGKLLEQDAVVILNNMSNPDTALLALKFFQERLK---FNREVVVYNVTLK 184
Query: 166 VFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCE 225
VF E L+ + E ++P+ F+ ++ C L D V+ +E M + G E
Sbjct: 185 VFRKGRDLDKAEKLFDEM-LERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMPSFGLE 243
Query: 226 PDRSSYRTVIN 236
PD + T+I+
Sbjct: 244 PDDVTLSTMID 254
>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35130-like [Glycine max]
Length = 357
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+ +AL +F ++ + KP + Y ++ F GL + E ++ ++ E LEP+
Sbjct: 53 KAGKSFMALILFHEMTTHKC-KPNICTYTALVNAFVREGLCEKAEEVFEQMQ-EAGLEPD 110
Query: 193 IQGFNALLKCL--------VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +NAL++ G+ + + LM+ +GCEPDR+SY +++
Sbjct: 111 VYAYNALMETYKFSSPFSRAGYPYG--AAEIFSLMQHMGCEPDRASYNILVDA 161
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K + + P V Y MI F G F+ V+ L +K E L +Q FN ++
Sbjct: 264 KVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMK-ERGLAVSLQIFNGIIDARFKHGC 322
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
D M GCEPD ++Y T+ING
Sbjct: 323 EIEAADAVRWMIESGCEPDMATYNTLING 351
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
RRLL ++ L E + ALKVFE +R + WY+P V +Y +I + G
Sbjct: 111 RRLLPRTVLEALHERIAALRWESALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKA 170
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSSYRTVI 235
L F + P ++ + AL+ D + MK T GC PD +Y +I
Sbjct: 171 HEL-FQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILI 229
>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
Length = 458
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 115 KFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
K +LL ++ +L + +++ ALKVFE +R +QWY+P Y ++++ G
Sbjct: 15 KASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRLLEMLGKCKRPD 74
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSSYRT 233
L F + P + F AL+ L ++ + M T C PD +Y
Sbjct: 75 EAASL-FQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSL 133
Query: 234 VI 235
+I
Sbjct: 134 LI 135
>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
Length = 551
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + + P+ Y I+ F + GL L+ +++TE S P + ++
Sbjct: 270 AMKVLEEMIQMK-HTPESFTYIAAIESFCSAGLVSEARELFEFMRTEGSTISSPTAKTYS 328
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ V D + +C+EL M++ GC PD S+Y+ +I G+
Sbjct: 329 IMI---VALAKADRMEECFELLSDMRSCGCMPDVSTYKELIEGM 369
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 111 VFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+F R LK D++ ++R + AL++ E ++KE+ ++P + +I F
Sbjct: 18 IFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKER-HRPTSRTFMPIIHAF 76
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
G + ++ ++ + P +Q +NAL+ LV + D V+ + M G P+
Sbjct: 77 AKAGAIRKALDVFDMMRRSGCI-PTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPN 135
Query: 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL--EFLEED 267
+Y T+++G ++ + AF+Y+ + E LE D
Sbjct: 136 ERTYTTIMDGYASLGDTG-------KAFEYFSRIKDEGLELD 170
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLKTENSLEP 191
+ + C LALK+ D+R + +P ++ Y +I F G H +++L LK + L P
Sbjct: 573 KTSCCDLALKMLNDVRC-KGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLK--DGLLP 629
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
I +N+ + K+ + + YE M G + D ++Y T+I+G V F+
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFA 685
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF-QHVEILYFYLK 184
V+ L R+ + A ++ ++ K + P Y+ +I+ + G+ + +EI F +
Sbjct: 416 GVISSLCRKGNTYPAFQLLYEMTK-YGFVPDSYTYSSLIRGLCSEGMLDEAMEI--FSIM 472
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
EN P++ FNAL+ L + DL + +E+M G P+ ++Y ++ G+ EE+
Sbjct: 473 EENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEM 532
Query: 245 AFSGIIRQDAF 255
+ + ++ +
Sbjct: 533 ELAAAVLKELY 543
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 114 SKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF 173
SK +F V+ R+ A + F+D+ K YKP + Y M+QVFG G++
Sbjct: 301 SKGLEFDEFTCTTVISACGREGILDEARRFFDDL-KLNGYKPGTATYNSMLQVFGKAGVY 359
Query: 174 QHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232
E L + E N+ EP+ +N L+ V D + M + G P+ +Y
Sbjct: 360 --TEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYT 417
Query: 233 TVING 237
TVIN
Sbjct: 418 TVINA 422
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
R C A ++ +DI+ P V Y +I+ F GL Q I T N ++P
Sbjct: 705 RVGDCWKAEEMLKDIQN-SGISPDVVSYNTVIKGFCKKGLVQEA-IRILSEMTANGVQPC 762
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
FN + C G L + M GC P+ +Y+ VI+G
Sbjct: 763 PITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDG 807
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
RRLL ++ L E + ALKVFE +R + WY+P + +Y +I + G +
Sbjct: 101 RRLLPGTVLEALHERVAALRWDSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKA 160
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLV-------GFKLRDLVVDCYELMKTVGCEPDRS 229
L F + P ++ + AL+ F L D + D T GC+PD
Sbjct: 161 HEL-FQAMIDEGCAPNLESYTALVSAYSRSGRFHEAFNLLDRMKD------TPGCQPDVK 213
Query: 230 SYRTVI 235
+Y +I
Sbjct: 214 TYSILI 219
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + Y I G Q E + + + L+P ++ + L+K L
Sbjct: 689 KEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM-VDVGLKPNVKTYTTLIKGWARVSL 747
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + C+E MK G +PD +SY ++ L ME ++GII
Sbjct: 748 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 793
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLKTENSLEP 191
+ + C LALK+ D+R + +P ++ Y +I F G H +++L LK + L P
Sbjct: 573 KTSCCDLALKMLNDVRC-KGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLK--DGLLP 629
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
I +N+ + K+ + + YE M G + D ++Y T+I+G V F+
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFA 685
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + Y I G Q E + + + L+P ++ + L+K L
Sbjct: 711 KEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM-VDVGLKPNVKTYTTLIKGWARVSL 769
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + C+E MK G +PD +SY ++ L ME ++GII
Sbjct: 770 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 815
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + Y I G Q E + + + L+P ++ + L+K L
Sbjct: 710 KEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM-VDVGLKPNVKTYTTLIKGWARVSL 768
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + C+E MK G +PD +SY ++ L ME ++GII
Sbjct: 769 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 814
>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFEDI+ Q P + + ++ VFG NG+ V ++ +K + PE FN L+
Sbjct: 159 MKVFEDIKTFQC-SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV-PERDTFNTLI 216
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y+ M G PD SSY V+ L
Sbjct: 217 SSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAAL 254
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++FE++R E KP + + +I++ G G F + ++ +KT P+I +N L
Sbjct: 123 AVQIFEEMRNEGC-KPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQ-CSPDIVTWNTL 180
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L + V ++ MK G P+R ++ T+I+
Sbjct: 181 LSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 217
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + Y I G Q E + + + L+P ++ + L+K L
Sbjct: 715 KEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEM-VDVGLKPNVKTYTTLIKGWARVSL 773
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + C+E MK G +PD +SY ++ L ME ++GII
Sbjct: 774 PDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 819
>gi|21617993|gb|AAM67043.1| unknown [Arabidopsis thaliana]
Length = 394
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS---LYADMIQVFGTNGLFQHVEILYF 181
IAV +R+ + E+I +EQ P +S A +I ++G G+F++ + ++
Sbjct: 71 IAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFD 130
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYE-LMKTVGCEPDRSSYRTVINGL 238
+ E + + + FNALL V K DLV +E L + EPD +SY T+I GL
Sbjct: 131 EM-PERNCKRTVLSFNALLNACVNSKKFDLVEGIFEELPGKLSIEPDVASYNTLIKGL 187
>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++ L++ H LAL V+ED R++ + V+ Y +I+ G + + + ++ E
Sbjct: 236 IMDSLIKTGHLDLALSVYEDFRRDGLVEESVT-YMILIKGLCKAGRIEEMMEVLGRMR-E 293
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
N +P++ + A+++ L G D + +E MK G EPD +Y T++ L
Sbjct: 294 NLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTAL 345
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFEDI+ Q P + + ++ VFG NG+ V ++ +K + PE FN L+
Sbjct: 431 MKVFEDIKTFQC-SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV-PERDTFNTLI 488
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y+ M G PD SSY V+ L
Sbjct: 489 SSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAAL 526
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++FE++R E KP + + +I++ G G F + ++ +KT P+I +N L
Sbjct: 395 AVQIFEEMRNEGC-KPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQ-CSPDIVTWNTL 452
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L + V ++ MK G P+R ++ T+I+
Sbjct: 453 LSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 489
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 120 LKFDMIAVLRELLRQNHCLLALKVFEDIR--KEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
L D++ +++ L C AL+VFE +R KE S+ A +I + G G
Sbjct: 126 LSLDVLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAA 185
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L L ++ + ++ + +++ V ++ M+ VGC+P +Y ++N
Sbjct: 186 SLLHNL-CKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILN 243
>gi|397571070|gb|EJK47605.1| hypothetical protein THAOC_33659 [Thalassiosira oceanica]
Length = 952
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR---D 210
+P+ ++Y I+ + G+F L +KT N + P+ FN++L L R D
Sbjct: 508 EPESNMYTSCIEAYANRGMFDEARKLLDNMKT-NGVRPQAVAFNSILDALAKSHARHRFD 566
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
+ +E M ++ +PD ++Y +I+ +E S +R
Sbjct: 567 KIEQWFEFMLSMDTKPDTATYSIIISAFSRSDEQKASDYLRH 608
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++ R+ A+ V E + KE+ P Y +I F G + I Y
Sbjct: 312 LISSFCREGRVREAVNVLE-VMKEKGLTPDSYSYDPLISAFCKEGRLD-LAIEYLEKMVS 369
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ P+I +N +L L F DL +D +E + VGC P +Y T+ + L
Sbjct: 370 DGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421
>gi|168028750|ref|XP_001766890.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681869|gb|EDQ68292.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1145
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 105 SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
+ P+ V ++ +L +M V+R L +N +++++ + ++WY P A ++
Sbjct: 207 ARPIADVLSTWPEQLNNDEMCVVVRNLGEKNW-RRSVELYGWLNLQKWYTPSPRFLATVL 265
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
+ G +H L+ L+ E+ + IQ FNA+L ELM+ GC
Sbjct: 266 SLLGKANQLEHARELF--LRAESKIMSCIQVFNAILGAYAKQGQWQAAQYILELMELSGC 323
Query: 225 EPDRSSYRTVING 237
EPD ++ T+ +
Sbjct: 324 EPDIVTFNTIASA 336
>gi|18399887|ref|NP_566445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273726|sp|Q9LK57.1|PP226_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g13160, mitochondrial; Flags: Precursor
gi|10172603|dbj|BAB01407.1| unnamed protein product [Arabidopsis thaliana]
gi|22531265|gb|AAM97136.1| expressed protein [Arabidopsis thaliana]
gi|27311983|gb|AAO00957.1| expressed protein [Arabidopsis thaliana]
gi|332641782|gb|AEE75303.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 394
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS---LYADMIQVFGTNGLFQHVEILYF 181
IAV +R+ + E+I +EQ P +S A +I ++G G+F++ + ++
Sbjct: 71 IAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFD 130
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
+ N + FNALL V K DLV + EL + EPD +SY T+I GL
Sbjct: 131 EMPERNCKRTALS-FNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGL 187
>gi|255570191|ref|XP_002526056.1| conserved hypothetical protein [Ricinus communis]
gi|223534637|gb|EEF36333.1| conserved hypothetical protein [Ricinus communis]
Length = 138
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+K+++ +RKE WY+P + Y DM+ + N V++++ LK E L + F ++
Sbjct: 1 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEVKLVWQDLKREGVLFDQ-HTFGDII 59
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + +L +D YE M+ P +R ++ GL
Sbjct: 60 RAFLDSELPSEAMDIYEEMRQSPEIPLSLPFRVILKGL 97
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 108 LDHVFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
LD V NS R D I +L R ++ A+KVFED+ + +P + Y MI
Sbjct: 285 LDMVRNSGLRP----DAITYNTLLSACSRDSNLEGAVKVFEDMEAHRC-QPDLWTYNAMI 339
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
V+G GL E L+ L+ + P+ +N+LL + + V + Y+ M+ +G
Sbjct: 340 SVYGRCGLAAEAERLFIELELKG-FSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398
Query: 225 EPDRSSYRTVIN 236
D +Y T+I+
Sbjct: 399 GKDEMTYNTIIH 410
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A+L L R N LA+++F R E +V +Y M+ V+ +G F + L ++
Sbjct: 196 AILGVLGRWNQESLAVEIF--TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELLDAMRQ 253
Query: 186 ENSLEPEIQGFNALLKCLV--GFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P++ FN L+ + G +LVV+ ++++ G PD +Y T+++
Sbjct: 254 RGCV-PDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSA 306
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGT-NGLFQHVEILYFYLKTENSLEPEIQGFNA 198
AL+VFE + W+ P + A ++ V G N VEI + + E ++ +Q +NA
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEI---FTRAEPTVGDRVQVYNA 230
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------------LEAMEEVAF 246
++ + + M+ GC PD S+ T+IN +E ++ V
Sbjct: 231 MMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRN 290
Query: 247 SGIIRQDAFKY 257
SG +R DA Y
Sbjct: 291 SG-LRPDAITY 300
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++ K ++ +L R + K++ + K Y P + LY MI++ + E
Sbjct: 854 KISKSSILLMLDAFARAGNIFEVNKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
I+ ++ N + E+ +N++LK + V Y+ +K G EPD ++Y T+I
Sbjct: 913 IMVSEMEEAN-FKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLI 969
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 63/165 (38%), Gaps = 43/165 (26%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG----- 171
+ L FD+ VL EL RQ+ L+VF +K+ WY P LY +I G G
Sbjct: 6 KPLSPFDITCVLTELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNA 65
Query: 172 --LFQHV--------------------------EILYFYLKTENSLEPEIQ----GFNAL 199
LFQ + E L + + S EP Q NAL
Sbjct: 66 TLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNAL 125
Query: 200 LKCLVGFKLRDLVVDCYELMKTV------GCEPDRSSYRTVINGL 238
+ LV L D + + M+ GCEP+ +Y +I+ L
Sbjct: 126 IDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDAL 170
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + + I G Q E + + + L+P ++ F L+K L
Sbjct: 700 KEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEM-ADVGLKPNVKTFTTLIKGWAKVSL 758
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + C+E MK+ G +PD ++Y ++ L ME ++GI+
Sbjct: 759 PDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 804
>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V+ED+ KE+ YKP Y +I +F + F+ L + E +P++ +N +
Sbjct: 275 ALGVWEDM-KERGYKPDTVTYNVIINLFCKDKDFEAAYRLLDEM-VEKGCKPDVISYNVI 332
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EA---MEEVAFSGI 249
L+ L R D +E M GC PD SYR + +G EA ++E+ F G
Sbjct: 333 LRELFEEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFKGF 392
Query: 250 I 250
+
Sbjct: 393 V 393
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
+Q P +YA ++ F NG L F L E + P I G+NA++K F +
Sbjct: 458 DQSVLPDAFVYATLVDGFIRNGNLDEARKL-FELTIEKGMNPGIVGYNAMIKGYCKFGMM 516
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVING 237
+ C MK PD +Y TVI+G
Sbjct: 517 KDAMACINRMKKRHLAPDEFTYSTVIDG 544
>gi|414881857|tpg|DAA58988.1| TPA: hypothetical protein ZEAMMB73_205276 [Zea mays]
Length = 379
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
++ P + Y ++ TNG V+ + ++ E SL P++ +NAL++ + K
Sbjct: 181 QDHGIAPDTAAYNALLTYKSTNGTVDEVKEVIRVMREEASLRPDVGSYNALMRAMARHKR 240
Query: 209 RDLVVDCY---ELMKTVGCEPDRSSYRTVINGL------EAMEEVAFSGIIRQ 252
D V+ Y E K PD ++Y V+ L E+V ++G+ R+
Sbjct: 241 LDEAVEVYRSLEAGKKADVVPDCATYSCVVGALCGAGRWSEAEDVFYAGVKRR 293
>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
Length = 731
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
KVF ++ K V+ A MI V+G G + E+L +K P++ +N+L++
Sbjct: 250 KVFAEMMKAGVELTTVTFNA-MIHVYGKAGRTREAELLVTNMKQRKDCCPDVATYNSLIE 308
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
V +LV C E M+ G D+ ++RT+I+ A
Sbjct: 309 MYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISAYAA 347
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
+Q P +YA ++ F NG L F L E + P I G+NA++K F +
Sbjct: 477 DQSVLPDAFVYATLVDGFIRNGNLDEARKL-FELTIEKGMNPGIVGYNAMIKGYCKFGMM 535
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVING 237
+ C MK PD +Y TVI+G
Sbjct: 536 KDAMACINRMKKRHLAPDEFTYSTVIDG 563
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ F +R + KP V + +I FG + + Y+K EN L+P++ + L
Sbjct: 619 AINAFRVMRADGL-KPSVLVLNSLINAFGEDRRDAEAFSVLQYMK-ENDLKPDVVTYTTL 676
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+K L+ + D V YE M GC PDR + + + L ME
Sbjct: 677 MKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSALRYMERT 721
>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 504
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEP 191
+Q C + V + + +E+ ++P + + +I FGT G +H+E L + ++S + P
Sbjct: 380 QQGLCEQTVNVLQ-LMEEEGFEPNLVMLNSLINAFGTAG--RHLEALAVFQHIKDSGMSP 436
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIR 251
++ + L+K + K + V + Y M+ GC PDR + + + +E+ I
Sbjct: 437 DVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAPDRKAREMLHDATVVLEQRGCKYFIS 496
Query: 252 QD 253
D
Sbjct: 497 ND 498
>gi|357495179|ref|XP_003617878.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519213|gb|AET00837.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 203
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL-FQHVEILYFYLKTENSLEPEIQGFNA 198
+ VF ++++ Y P + Y ++ V+G G+ + V +++ +KT N + P++ +N
Sbjct: 39 VVSVFNKMQRD-GYTPTLVTYNSILNVYGKMGMPWSRVTAIFYSMKT-NGVVPDLYIYNT 96
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L+ C L + V+ ++ +K+ G PDR +Y +++
Sbjct: 97 LITCCRQGSLYEEAVNVFDRIKSAGFVPDRVTYNALLD 134
>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
Length = 647
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 92 IQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ 151
I+A + L + + + + ++ +L + D + +L + + LLALK F R+
Sbjct: 61 IKAAKSLNSCNPNKDDVFNILGEFGNKLFEHDAVVILNNMSNPDTALLALKFF---RERL 117
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+ +V +Y ++V VE L+ + E +++P+ F+ ++ C L D
Sbjct: 118 EFNREVVVYNVTMKVLRKCRDLNKVEKLFDEM-IERAVKPDNVTFSTIISCARLCNLADK 176
Query: 212 VVDCYELMKTVGCEPDRSSYRTVING 237
V+ +E M + G +PD ++ T+I+
Sbjct: 177 AVEWFEKMPSFGLDPDDVTFSTMIDS 202
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 110 HVFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
+F RR K D I A++ L + AL++ +++ KE+ KP V Y +I
Sbjct: 205 KLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM-KERGVKPGVVTYNALIAG 263
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP 226
FG G L +K N +P++ ++ L+ L+ D + M+ GC P
Sbjct: 264 FGKVGDLVEAYNLLDEMK-RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPP 322
Query: 227 DRSSYRTVINGL 238
D +Y T+INGL
Sbjct: 323 DTITYNTLINGL 334
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++L L + C A +FE+++ +W P V Y+ +I G G ++ + ++
Sbjct: 14 SLLNALAKAGQCEEAQLLFEELKAAKW-TPDVVSYSCLINSLGRAGKWEAALEVVAEMQA 72
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +P + +N L+ CL D + M+ GC PD +Y +I+ L
Sbjct: 73 KGC-KPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124
>gi|297800842|ref|XP_002868305.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297314141|gb|EFH44564.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 502
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 92 IQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ 151
I+ ++H R H D N + R+ + + V+R L + A++ F + +
Sbjct: 103 IRFLRHSSRLHEILPVFDAWKNLERSRISEANYERVIRLLCEEKSMNEAIRAFRGMIDDH 162
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
P + +Y +I + G F+ + Y EN L P + ++ L++ +K+ D
Sbjct: 163 ELSPSLEIYNSIIHGYADEGKFEEA-MFYLNHMKENGLLPITETYDGLIEAYGKWKMYDE 221
Query: 212 VVDCYELMKTVGCEPDRSSYRTVI 235
+V C + M++ GC D +Y +I
Sbjct: 222 IVLCLKRMESEGCVRDHVTYNLLI 245
>gi|195627114|gb|ACG35387.1| hypothetical protein [Zea mays]
Length = 371
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
++ P + Y + TNG V+ L ++ E SL P++ +NAL++ + K
Sbjct: 181 QDHGIAPDTAAYNARLTYKSTNGTVDEVKELIRVMREEASLRPDVGSYNALMRAMARHKR 240
Query: 209 RDLVVDCY---ELMKTVGCEPDRSSYRTVINGL------EAMEEVAFSGIIRQ 252
D V+ Y E K PD ++Y V+ L E+V ++G+ R+
Sbjct: 241 LDEAVEVYRSLEAGKKADVVPDCATYSCVVGALCGAGRWSEAEDVFYAGVKRR 293
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ F +R + KP V + +I FG + + Y+K EN L+P++ + L
Sbjct: 590 AINAFRVMRADGL-KPSVLVLNSLINAFGEDRRDAEAFSVLQYMK-ENDLKPDVVTYTTL 647
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
+K L+ + D V YE M GC PDR + + + L ME
Sbjct: 648 MKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSALRYME 690
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHS----NPLDHVFNSKFR-RL 119
S ++ RDRG+ +K Q R + + +H + + N LDH + R R+
Sbjct: 400 SRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRM 459
Query: 120 LKFDMIAVLRELLRQNHCLL-----ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
AV L HC A ++FE + +E P + Y MI FG ++
Sbjct: 460 EGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAM-QESGCSPCTTTYNIMINSFGEQERWE 518
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
V+ L ++++ L + + L+ + +D ++C E+MK+VG +P + Y
Sbjct: 519 DVKTLLGKMQSQGLLA-NVVTYTTLVDIYGQSGRFKD-AIECLEVMKSVGLKPSSTMYNA 576
Query: 234 VIN-----GLEAMEEVAFSGIIRQDAFK 256
+IN GL AF ++R D K
Sbjct: 577 LINAYAQRGLSEQAINAFR-VMRADGLK 603
>gi|242046988|ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
gi|241924617|gb|EER97761.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
Length = 551
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++ L +C LA ++FE + K Q P V+LY M+ G F+ + ++ +
Sbjct: 401 TLINGLYGVGYCNLAEEIFEQMLKAQ-VVPNVNLYNIMLHNLCKAGQFEQAQKIFLQM-I 458
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + P++ FN L+ L VD + M+ G EPD ++R +I+GL
Sbjct: 459 QKEVSPDVITFNTLIYWLGKSSRAIEAVDLFRDMRARGVEPDSLTFRYLISGL 511
>gi|310791590|gb|EFQ27117.1| pentatricopeptide repeat domain-containing protein [Glomerella
graminicola M1.001]
Length = 722
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 106 NPLDHVFNSKFRRLLKFD------MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL 159
+P++H++ + R LK D IA L +L + L ALK E + + K +
Sbjct: 366 DPIEHLWATITRSPLKLDEQIWSVRIAALGQLGPERAGLAALKEMESLWDAE-VKSGKPI 424
Query: 160 YADMIQVFGT--------------NGLF--QHVEILYFYLK--TENSLEPEIQGFNALLK 201
AD + G +GL ++++Y LK T LEP+I +N LL
Sbjct: 425 KADEPGIAGPKAVKPGIASVNAAISGLLMRNRMDVIYAVLKWATSRGLEPDIYTYNMLLS 484
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
++ + V MK G EPD +++ ++ E AF+G+ +Q
Sbjct: 485 QMLKKGASEKVDALLSSMKATGVEPDAATFTIIL-------EAAFTGLHKQ 528
>gi|212276298|ref|NP_001130394.1| uncharacterized protein LOC100191490 [Zea mays]
gi|194689016|gb|ACF78592.1| unknown [Zea mays]
gi|238014318|gb|ACR38194.1| unknown [Zea mays]
gi|414881856|tpg|DAA58987.1| TPA: hypothetical protein ZEAMMB73_205276 [Zea mays]
Length = 371
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
++ P + Y ++ TNG V+ + ++ E SL P++ +NAL++ + K
Sbjct: 181 QDHGIAPDTAAYNALLTYKSTNGTVDEVKEVIRVMREEASLRPDVGSYNALMRAMARHKR 240
Query: 209 RDLVVDCY---ELMKTVGCEPDRSSYRTVINGL------EAMEEVAFSGIIRQ 252
D V+ Y E K PD ++Y V+ L E+V ++G+ R+
Sbjct: 241 LDEAVEVYRSLEAGKKADVVPDCATYSCVVGALCGAGRWSEAEDVFYAGVKRR 293
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 70 EMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRA-HLHSNPLDHVFNSKFRRLLKFDMIAVL 128
EMR RG +P N+ I A+ +L +A L+ + F+ ++
Sbjct: 856 EMRSRGC--EPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPT-----PCTYGPLI 908
Query: 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS 188
LL+ A+K+FE++ + P +Y +I FG +G L+ + E
Sbjct: 909 DGLLKAGRSEQAMKIFEEML-DYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKE-G 966
Query: 189 LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ P+++ + L++CL D V +E +K G +PD SY +INGL
Sbjct: 967 IRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGL 1016
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 155 PQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
P V Y ++ G G + + +E+ F TE+ P FN+LL CL DL +
Sbjct: 583 PTVVTYNILLTGLGKEGKILKALEL--FGSMTESGCPPNTITFNSLLDCLSKNDAVDLAL 640
Query: 214 DCYELMKTVGCEPDRSSYRTVINGL 238
+ M + C PD +Y T+I GL
Sbjct: 641 KMFCRMTMMNCNPDVLTYNTIIYGL 665
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFE++ + +P + Y M+ V G G + E L+ L E P+ +N+L
Sbjct: 312 AVTVFEEMIASEC-RPDLWTYNAMVSVHGRCGKAEEAERLFGEL-VEKGFMPDAVTYNSL 369
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GFK DL V Y+ M+ VGC
Sbjct: 370 LYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGC 429
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +I+ L M+++A +G + +D
Sbjct: 430 TPDAVTYTVMIDSLGKMDKIAEAGKVLED 458
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVF-------NSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+ + +V + RA + LD ++ + F+ + K ++ +L + +
Sbjct: 812 LPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFK-ISKSTVLLMLDAFAKAGDVFEVM 870
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ + K Y P + LY M + + F+ VE++ ++ +P++ FN+LL
Sbjct: 871 KIYNGM-KAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAG-FKPDLSIFNSLLN 928
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
D Y+ + G EPD +Y T+I
Sbjct: 929 MYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLI 962
>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
Length = 551
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + + P+ Y I+ F + GL L+ +++TE P + ++
Sbjct: 270 AMKVLEEMIQMK-HTPESFTYVAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYS 328
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ V D + +C+EL M+T GC PD ++Y+ +I G+
Sbjct: 329 IMI---VALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGM 369
>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
Length = 551
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + + P+ Y I+ F + GL L+ +++TE P + ++
Sbjct: 270 AMKVLEEMIQMK-HTPESFTYVAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYS 328
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ V D + +C+EL M+T GC PD ++Y+ +I G+
Sbjct: 329 IMI---VALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGM 369
>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Vitis vinifera]
Length = 494
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEP 191
+Q C +KV + + E +P + + +I FG G +H+E L Y +++ + P
Sbjct: 350 QQGLCEQTVKVLQLMETEG-IEPNLIMLNMLINAFGIAG--RHLEALSVYHHIKDTGISP 406
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIR 251
++ ++ L+K + + D V + YE M++ GC PDR + + L +++
Sbjct: 407 DVVTYSTLMKACIRARKFDKVPEIYEEMESAGCTPDRKAREMLQTALL---------VLQ 457
Query: 252 QDAFKYYGDLEFLEEDEED 270
Q KYY ++F E D
Sbjct: 458 QRHCKYYFGIKFRNRGEWD 476
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P+++ Y+ +++ FG G + V +L +++E L P+I +N L++ +D
Sbjct: 287 PEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYL-PDISSYNVLIEAHAKLGSIKEAMD 345
Query: 215 CYELMKTVGCEPDRSSYRTVIN 236
++ M+ GC P+ S+Y ++N
Sbjct: 346 VFKQMQAAGCVPNASTYSILLN 367
>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02060, chloroplastic; Flags: Precursor
gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
R K Q + +I+ +G GLFQ L+ +K + + P + FN+LL L+
Sbjct: 129 RSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMK-QMGISPSVLTFNSLLSILLKRG 187
Query: 208 LRDLVVDCY-ELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEE 266
+ D + E+ +T G PD ++ T+ING V +AF+ + D+E L
Sbjct: 188 RTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMV-------DEAFRIFKDME-LYH 239
Query: 267 DEEDIAAY 274
D+ Y
Sbjct: 240 CNPDVVTY 247
>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
L E + H L AL+VF+ +R++ +Y+P+ +I + G +G L F E
Sbjct: 97 LSERIHNKHWLQALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQL-FTTMIEE 155
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
LEP + + ALL + D MK + C+PD +Y T+I
Sbjct: 156 GLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLI 204
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P+++ Y+ +++ FG G + V +L +++E L P+I +N L++ +D
Sbjct: 287 PEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYL-PDISSYNVLIEAHAKLGSIKEAMD 345
Query: 215 CYELMKTVGCEPDRSSYRTVIN 236
++ M+ GC P+ S+Y ++N
Sbjct: 346 VFKQMQAAGCVPNASTYSILLN 367
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA +AV KR +S ++LL ++ L E + ALKVFE +R+
Sbjct: 82 EATKAVIEKKRGPNNS-----------KKLLPRTVLEALHERITALRWESALKVFELLRE 130
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
+ WY+P +Y +I + G + L+ + E + + + ALL L
Sbjct: 131 QLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNH-EAYTALLSAYSRSGLF 189
Query: 210 DLVVDCYELMK-TVGCEPDRSSYRTVINGLEAMEEVAFSGI 249
D E MK T C+PD +Y +I ++ VAF +
Sbjct: 190 DKAFSLLEKMKNTPDCQPDVHTYSVLIK--SCLQVVAFDKV 228
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
Q KP Y +I +G F +E + E EP++ N+ L+ +
Sbjct: 238 QGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIE 297
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVING-------------LEAMEEVAFSGIIRQ----- 252
+ CYE ++ G EP+ ++ +++ +E M++ FS I
Sbjct: 298 TMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVI 357
Query: 253 DAFKYYGDLEFLE 265
DAF GDL+ +E
Sbjct: 358 DAFGRAGDLKQME 370
>gi|2244775|emb|CAB10198.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268124|emb|CAB78461.1| salt-inducible protein homolog [Arabidopsis thaliana]
Length = 561
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++R L + A++ F + + P + +Y +I + +G F+ + Y E
Sbjct: 197 IIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEA-MFYLNHMKE 255
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
N L P + ++ L++ +K+ D +V C + M++ GC D +Y +I
Sbjct: 256 NGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLI 304
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL L +N A+K+ ++ +P V ++A ++ F NG I F +
Sbjct: 451 VLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEA-IKIFKVIIR 509
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
++P I G+NA++K F + C MK V PD +Y TVI+G
Sbjct: 510 KGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDG 560
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
V+ ++Q+ ALK+F + K + +KP V Y +I F E ++ +K+
Sbjct: 556 TVIDGYVKQHDMSSALKMFGQMMKHK-FKPNVITYTSLINGFCKKADMIRAEKVFRGMKS 614
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L P + + L+ + +ELM GC P+ +++ +INGL
Sbjct: 615 FD-LVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGL 666
>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g04760, chloroplastic-like [Glycine max]
Length = 531
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ-HVEILYFYLKT 185
++ L R + + +D++K + +P Y +I V G +E+L +
Sbjct: 269 LISSLCRDGKVEEGVGLLKDMKK-KGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMIS- 326
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-EAMEEV 244
+ P+I +N +L CL K D + +E + VGC P+ SSY TV + L + +V
Sbjct: 327 -DGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKV 385
Query: 245 AFSGIIRQDAFKYYGDLEFLEEDEEDIAAY 274
G+I LE L+ + D+ AY
Sbjct: 386 RALGMI----------LEMLDXVDPDVIAY 405
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+L L +Q AL +FE + E P S Y + G++G V L L+
Sbjct: 338 TILACLCKQKRADEALSIFEKL-GEVGCSPNASSYNTVFSALGSSG--HKVRALGMILEM 394
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVD-CYEL-----MKTVGCEPDRSSYRTVINGL 238
+ ++P++ +N+L+ CL RD +VD EL M++ C+P SY V+ GL
Sbjct: 395 LDXVDPDVIAYNSLISCLC----RDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGL 449
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVF-------NSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+ I +V + RA + LD ++ + F+ + K +I +L + +
Sbjct: 656 LPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFK-ISKSTVILMLDAFTKAGDIFEVM 714
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ + KE Y P + +Y MI + N ++ VE++ ++ EP++ N LL
Sbjct: 715 KIYNGM-KEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEME-RAGFEPDLTILNTLLL 772
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
G D V+ Y + G EP+ +Y T+I
Sbjct: 773 MYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLI 806
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFE++ + +P + Y M+ V G G Q E ++ L E +P+ +N+L
Sbjct: 154 AVAVFEEMMASEC-RPDLWTYNAMVSVHGRCGKAQDAERMFREL-VEKGFKPDAVTYNSL 211
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GFK DL + Y+ M+ +GC
Sbjct: 212 LYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGC 271
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +I+ L M+ ++ +G + ++
Sbjct: 272 TPDAVTYTVLIDSLGKMDRISDAGKVLEE 300
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+AL F+ +R++ ++ Y M+ + G F + L + ++ +P + +N
Sbjct: 359 VALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQM-VKDGCQPNVVTYNR 417
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L+ C ++ + M+ VGCEPDR +Y T+I+
Sbjct: 418 LIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLID 455
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
+A + ++ +K H+H P + S L K D + A +FE+ K
Sbjct: 613 KAYEVLEEMKVKHVH--PTVATYGSIVDGLAKIDRLDE------------AYMLFEEA-K 657
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFNALLKCLVGFK 207
+ + V LY+ +I FG G ++ Y L+ + L P + +N+L+ LV +
Sbjct: 658 SKGIELNVILYSSLIDGFGKVG---RIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTE 714
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + C++ MK + C P+ +Y +INGL
Sbjct: 715 EIDEALICFQSMKEMKCSPNTYTYSILINGL 745
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+ VF+D+R Y P V + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 415 MAVFDDLR-SAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLI 472
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L D ++ Y+ M G PD S+Y V++ L
Sbjct: 473 SSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSAL 510
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y +I +G G + L+ +K + ++P+I +N +K V +
Sbjct: 667 KSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-SGVKPDIVTYNIFIKSYVANIM 725
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +D + T GC P+ ++ +++ G
Sbjct: 726 FEEAIDLVRYLVTQGCRPNERTFNSILQG 754
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGFNA 198
A +VF+++ K ++P + ++ V+G +H E + + EN+ P + +N+
Sbjct: 274 AAQVFDEM-KAAGFEPDKVTFNSLLDVYGK--ARKHEEAIGVLKRMENAGCTPSVVTYNS 330
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L+ V L + ++ + M+ G +PD +Y T+I+GL+ + ++
Sbjct: 331 LISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKI 376
>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L +L+ + L AL+VFE +R++ +Y+P+ Y ++ + G +G L F E
Sbjct: 114 ALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHEL-FDTMVE 172
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
EP + + ALL L D MKT+ C+PD +Y T++
Sbjct: 173 EGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLL 222
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A++ L +Q A +FE+ R + + P V Y MI G ++ LY +
Sbjct: 245 ALIDGLGKQRRVKEAYDLFEEARAKGCH-PTVVTYNTMIDGLCKCGRIENALTLYDDMVR 303
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
E L+P++ ++AL+ L + + YE M GC PD +Y T+++GL
Sbjct: 304 EPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L +L+ + L AL+VFE +R++ +Y+P+ Y ++ + G +G L F E
Sbjct: 114 ALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHEL-FDTMVE 172
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
EP + + ALL L D MKT+ C+PD +Y T++
Sbjct: 173 EGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLL 222
>gi|3258568|gb|AAC24378.1| Unknown protein [Arabidopsis thaliana]
Length = 691
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
R K Q + +I+ +G GLFQ L+ +K + + P + FN+LL L+
Sbjct: 129 RSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMK-QMGISPSVLTFNSLLSILLKRG 187
Query: 208 LRDLVVDCY-ELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEF 263
+ D + E+ +T G PD ++ T+ING V +AF+ + D+E
Sbjct: 188 RTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMV-------DEAFRIFKDMEL 237
>gi|224114223|ref|XP_002316701.1| predicted protein [Populus trichocarpa]
gi|222859766|gb|EEE97313.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF+++R+ Q + +S A + + F VE L+ L E +EP++ +N +
Sbjct: 118 ARKVFDEMRERQCARTVMSFNALLGACLSSKN-FDEVEGLFRGLSKEIKIEPDLISYNTV 176
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
+K D V + MK G EPD ++ T+++G A
Sbjct: 177 IKAFCEMGSLDSAVSLLDEMKRKGLEPDLITFNTLLHGFYA 217
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D K + +P + + ++ F G F E ++ +K +N +EP+++ +NA L L
Sbjct: 194 DEMKRKGLEPDLITFNTLLHGFYAKGRFVDGERIWEQMKEKN-VEPDVRSYNAKLLGLTL 252
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
K + VV E MK+ G + D SY +I G
Sbjct: 253 EKRMEDVVKVVEEMKSEGIQLDTFSYSALIRGF 285
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNA 198
AL++ + + + Y P V ++ I G L Q E+L L+ L P+ +N
Sbjct: 1318 ALEILQLLLSKGSY-PDVVTFSIFIDWLSKRGRLRQAGELLETMLRA--GLVPDTVTYNT 1374
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LLK L + VD +E+M+ GCEPD ++Y T++ L
Sbjct: 1375 LLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 1414
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + + I G Q E + + + L+P ++ F L+K L
Sbjct: 698 KEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEM-ADVGLKPNVKTFTTLIKGWARVSL 756
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGI 249
D + C+E MK+ G +PD ++Y ++ L ME ++GI
Sbjct: 757 PDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGI 801
>gi|79474381|ref|NP_193155.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635638|sp|O23278.2|PP310_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14190, chloroplastic; Flags: Precursor
gi|332657991|gb|AEE83391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++R L + A++ F + + P + +Y +I + +G F+ + Y E
Sbjct: 137 IIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEA-MFYLNHMKE 195
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
N L P + ++ L++ +K+ D +V C + M++ GC D +Y +I
Sbjct: 196 NGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLI 244
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
MI L L NH AL++FE R E + V ++ MI +G NG F L+ +
Sbjct: 184 MIGTLGRLGEINH---ALRLFESARLEG-HGNTVYSFSAMISAYGRNGHFSDAVDLFRSM 239
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVIN-----G 237
++ + P + +N+L+ ++ D+VV ++ M G PDR +Y ++++ G
Sbjct: 240 RSW-GVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKG 298
Query: 238 L-----EAMEEVAFSGIIRQDAFKYYGDLEFL 264
+ + + E+ GI+R DAF Y L+ L
Sbjct: 299 MWETAQKLLSEMDQKGIVR-DAFTYNTYLDTL 329
>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L +L+ + L AL+VFE +R++ +Y+P+ Y ++ + G +G L F E
Sbjct: 114 ALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHEL-FDTMVE 172
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVING 237
EP + + ALL L D MKT+ C+PD +Y T++
Sbjct: 173 EGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKA 224
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 29/192 (15%)
Query: 56 QKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSK 115
+++++ T +L+ R G+ KPL SI +Q H P + +
Sbjct: 106 KEEKIDVTEDILLSICRAYGRIHKPLD-----SIRVFHKMQDF-----HCKPTEKSY--- 152
Query: 116 FRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH 175
I+VL L+ +N A + + D+RK P V+ +I+ F N
Sbjct: 153 ---------ISVLAILVEENQLKSAFRFYRDMRK-MGIPPTVTSLNVLIKAFCKNSGTMD 202
Query: 176 VEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYR 232
+ F + + EP+ + L+ L F+ +V+ EL M+T GC P +Y
Sbjct: 203 KAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRS---IVEAKELLQEMETKGCSPSVVTYT 259
Query: 233 TVINGLEAMEEV 244
++I+GL + V
Sbjct: 260 SIIHGLCQLNNV 271
>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
Length = 496
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
L AL+VFE +R++ +Y+P+ Y ++ + G +G H L F + EP + +
Sbjct: 123 LQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQ-PHRARLLFDTMVQERCEPTPELYT 181
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVI 235
ALL L D LMKT+ C+PD +Y +I
Sbjct: 182 ALLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILI 220
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 125 IAVLRELLRQNHCLLALKVF---EDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
I+V+ R ALK F +D R KP V +Y ++ FQ + +Y
Sbjct: 115 ISVIGSYRRAGSSEQALKTFYRMQDFR----VKPTVKIYNHILDALLDENRFQMINPIYS 170
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
+K ++ +EP + +N LLK L D M + GC+PD SY T+I+ L +
Sbjct: 171 NMK-KDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKL 229
Query: 242 EEV 244
+V
Sbjct: 230 GKV 232
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V Y M+ V N +F L ++ EN P FN +K L G D +
Sbjct: 419 PNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC-PPNTVTFNTFIKGLCGSGRVDWAIK 477
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
++ M GC P+ ++Y +++ L
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSL 501
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K F+++ K Q YKP + ++ M+ ++ NGL+ ++ +K ++ L P++ +N+L+
Sbjct: 587 KAFQEV-KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIK-QSGLSPDLITYNSLMD 644
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +K+ +PD SY TVING
Sbjct: 645 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 681
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K F+++ K Q YKP + ++ M+ ++ NGL+ ++ +K ++ L P++ +N+L+
Sbjct: 587 KAFQEV-KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIK-QSGLSPDLITYNSLMD 644
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +K+ +PD SY TVING
Sbjct: 645 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 681
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 125 IAVLRELLRQNHCLLALKVF---EDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
I+V+ R ALK F +D R KP V +Y ++ FQ + +Y
Sbjct: 115 ISVIGSYRRAGSSEQALKTFYRMQDFR----VKPTVKIYNHILDALLDENRFQMINPIYS 170
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
+K ++ +EP + +N LLK L D M + GC+PD SY T+I+ L +
Sbjct: 171 NMK-KDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKL 229
Query: 242 EEV 244
+V
Sbjct: 230 GKV 232
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V Y M+ V N +F L ++ EN P FN +K L G D +
Sbjct: 419 PNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC-PPNTVTFNTFIKGLCGSGRVDWAIK 477
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
++ M GC P+ ++Y +++ L
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSL 501
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE +YA MI+ FG G L+ ++ S +P++ +NAL+ +V +
Sbjct: 472 KENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGS-KPDVYAYNALMSGMVRAGM 530
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAMEEVA--FSGIIRQDAFKY 257
D M GC PD +S+ ++NGL A+E A S II+ DA Y
Sbjct: 531 IDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSY 588
>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Brachypodium distachyon]
Length = 548
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + P+ Y I F + GL + L+ +++TE S P + ++
Sbjct: 267 AMKVLEEMILMK-HAPESFTYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPTAKAYS 325
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ LV D + DC+EL M +GC PD S+++ +I G+
Sbjct: 326 VMIVALVK---ADRMDDCFELISDMIKLGCMPDVSTFKDLIEGM 366
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
+L D + RE ++ AL++F+ ++++QW KP +Y MI + G GL +
Sbjct: 43 KLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCS 102
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ F EN ++ + F AL+ + + MK EP+ +Y TV+N
Sbjct: 103 EI-FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLN 160
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 37/197 (18%)
Query: 76 QNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
++ K ++ +N I + +A+ + R + ++ SK +LL ++ L E +
Sbjct: 71 RDSKEIKEDKNTKIASRKAISIILRREATKSIIEKKKGSK--KLLPRTVLESLHERITAL 128
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT-------------------------- 169
A++VFE +R++ WYKP V +Y +I + G
Sbjct: 129 RWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVY 188
Query: 170 ---------NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220
+G F L +K+ ++ +P++ ++ L+K + D V D M+
Sbjct: 189 TALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMR 248
Query: 221 TVGCEPDRSSYRTVING 237
G P+ +Y T+I+
Sbjct: 249 RQGIRPNTITYNTLIDA 265
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+ D+R+ Q +P Y +I +G +F +E + E+ +P+ N+ L+
Sbjct: 243 LLSDMRR-QGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRA 301
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING-------------LEAMEEVAFSGI 249
G +++ +CYE ++ G EP+ ++ +++ +E M++ +S
Sbjct: 302 FGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWT 361
Query: 250 IRQ-----DAFKYYGDLEFLE 265
I DAF GDL+ +E
Sbjct: 362 IVTYNVVIDAFGRAGDLKQME 382
>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g73400, mitochondrial; Flags: Precursor
gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 568
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+K+ E++ E +KP+ Y I F G+ L+ ++ T+ S P + F
Sbjct: 287 AMKLLEEM-IEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF- 344
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGLEAMEEV 244
AL+ +V D +C+EL M + GC PD S+Y+ VI G+ E+V
Sbjct: 345 ALM--IVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKV 392
>gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 981
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
R +L+F+++ ++ + NH A+ +FE++ K Q P S Y +IQ+ L
Sbjct: 498 RDILEFNVM--IKAYGKANHYDKAVLLFEEM-KYQGISPADSTYNSIIQMLSGADLVDQA 554
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGF-KLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
L ++ E +P Q F+A++ C +L D V+ Y+ M + G +P+ + Y +I
Sbjct: 555 RDLTVEMQ-EMGFKPHCQTFSAVIGCYARLGQLSDAVI-VYQEMISAGVKPNETVYGALI 612
Query: 236 NGL 238
NG
Sbjct: 613 NGF 615
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K F+++ K Q YKP + ++ M+ ++ NGL+ ++ +K ++ L P++ +N+L+
Sbjct: 496 KAFQEV-KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIK-QSGLSPDLITYNSLMD 553
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +K+ +PD SY TVING
Sbjct: 554 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 590
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 108 LDHVFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
LD V NS R D I +L R ++ A+KVFED+ + +P + Y MI
Sbjct: 285 LDMVRNSGLRP----DAITYNTLLSACSRDSNLDGAVKVFEDMEAHRC-QPDLWTYNAMI 339
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
V+G GL E L+ L+ + P+ +N+LL + + V + Y+ M+ +G
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFF-PDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398
Query: 225 EPDRSSYRTVIN 236
D +Y T+I+
Sbjct: 399 GKDEMTYNTIIH 410
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++ K ++ +L R + K++ + K Y P + LY MI++ + E
Sbjct: 854 KISKSSILLMLDAFARAGNIFEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
I+ ++ N + E+ +N++LK + V Y+ +K G EPD ++Y T+I
Sbjct: 913 IMVSEMEEAN-FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGT-NGLFQHVEILYFYLKTENSLEPEIQGFNA 198
AL+VFE + W+ P + A ++ V G N VEI + + E ++ +Q +NA
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEI---FTRAEPTVGDRVQVYNA 230
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAF 246
++ + + M+ GC PD S+ T+IN +E ++ V
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRN 290
Query: 247 SGIIRQDAFKY 257
SG +R DA Y
Sbjct: 291 SG-LRPDAITY 300
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 108 LDHVFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
LD V NS R D I +L R ++ A+KVFED+ + +P + Y MI
Sbjct: 285 LDMVRNSGLRP----DAITYNTLLSACSRDSNLDGAVKVFEDMEAHRC-QPDLWTYNAMI 339
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
V+G GL E L+ L+ + P+ +N+LL + + V + Y+ M+ +G
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFF-PDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398
Query: 225 EPDRSSYRTVIN 236
D +Y T+I+
Sbjct: 399 GKDEMTYNTIIH 410
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++ K ++ +L R + K++ + K Y P + LY MI++ + E
Sbjct: 854 KISKSSILLMLDAFARAGNIFEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
I+ ++ N + E+ +N++LK + V Y+ +K G EPD ++Y T+I
Sbjct: 913 IMVSEMEEAN-FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGT-NGLFQHVEILYFYLKTENSLEPEIQGFNA 198
AL+VFE + W+ P + A ++ V G N VEI + + E ++ +Q +NA
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEI---FTRAEPTVGDRVQVYNA 230
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAF 246
++ + + M+ GC PD S+ T+IN +E ++ V
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRN 290
Query: 247 SGIIRQDAFKY 257
SG +R DA Y
Sbjct: 291 SG-LRPDAITY 300
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLKTENSLEPEIQGFN 197
+ALK+ D+R+ + +P + Y +I F G H +++L LK + L P +N
Sbjct: 594 MALKMLNDVRR-RGLQPDIVAYNALINGFCQEGNMSHALQLLVILLK--DGLAPNTVVYN 650
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
+L+ + V YE M G D S+Y T+I+G VAF+
Sbjct: 651 SLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFA 700
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L +Q +A F RK+ +K V Y ++ + G F + L + E E
Sbjct: 41 LKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGC-E 99
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
P + +N L+ C D + + +M+ VGCEPDR +Y T+I+
Sbjct: 100 PNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLID 145
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +VFE++ K + + P + Y +I F G FQ V+ L + L ++ FN++
Sbjct: 259 ATRVFEEL-KLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVM-GLNVNVKVFNSI 316
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ + L D + +M +GCEPD ++Y +IN
Sbjct: 317 IDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILIN 353
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
V+ ++Q+ ALK+F + K Q YKP V Y +I F E ++ +++
Sbjct: 560 TVIDGYVKQHDLDSALKMFGQMMK-QKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQS 618
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
N LEP + + L+ + +ELM C P+ +++ +INGL
Sbjct: 619 FN-LEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGL 670
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P D +N+ K M+ ELL+ VF + + P Y +I
Sbjct: 288 PDDFTYNTIIDGYCKISMVQEATELLKD-------AVF------KGFVPDQVTYCSLING 334
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGC 224
G + L F ++P+I +N+L+K CL G L L V M GC
Sbjct: 335 LCAEGDVERALEL-FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV--MNEMAEEGC 391
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
PD +Y VINGL M ++ + ++ DA
Sbjct: 392 HPDIQTYNIVINGLCKMGNISDATVVMNDAI 422
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
+L D + RE ++ AL++F+ ++++QW KP +Y MI + G GL +
Sbjct: 43 KLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCS 102
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ F EN ++ + F AL+ + + MK EP+ +Y TV+N
Sbjct: 103 EI-FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLN 160
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V Y+ +++++G G F+ V L+ +K E S P + +N+L++ ++
Sbjct: 291 PDVETYSTLLRIYGNQGCFEQVRSLFSDMK-ELSTPPTVATYNSLIQVFGEGGYFQESIN 349
Query: 215 CYELMKTVGCEPDRSSYRTVIN 236
+ M G +PD ++Y +++
Sbjct: 350 LFHDMVDSGVKPDDATYSALLS 371
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ ++ D+ + KP V +Y +M+ VF +F E L + EN P FN L
Sbjct: 393 AISIWNDMTRSGC-KPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENC-PPNTVTFNTL 450
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L + + + M+ GC P+ +Y +++GL
Sbjct: 451 IRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGL 489
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFED+ + +P + Y M+ V G G + E L+ L E P+ +N+L
Sbjct: 312 AVTVFEDMIASEC-RPDLWTYNAMVSVHGRCGKAEEAERLFREL-VEKGFMPDAITYNSL 369
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GFK DL V Y+ M+ +GC
Sbjct: 370 LYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGC 429
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +I+ L M +A +G + +D
Sbjct: 430 TPDAVTYTVMIDSLGKMNRIAEAGKVLED 458
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 10/154 (6%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVF-------NSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+ + +V + RA + LD ++ + F+ + K ++ +L + +
Sbjct: 812 LPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFK-ISKSTVLLLLDAFAKAGDVFEVM 870
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ + K Y P + LY MI + + F+ VE++ ++ +P++ NALL
Sbjct: 871 KIYNGM-KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAG-FKPDLAILNALLN 928
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
D Y + G EPD +Y T+I
Sbjct: 929 MYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI 962
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184
I+V+R LALK F I++E +P V L ++ VF N + V K
Sbjct: 90 ISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCK 149
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + P + FN L+K L + + ++ M T+G P+ +Y T++ G
Sbjct: 150 DKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGF 203
>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
Length = 466
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+K+ E++ E +KP+ Y I F G+ L+ ++ T+ S P + F
Sbjct: 185 AMKLLEEM-IEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF- 242
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGLEAMEEV 244
AL+ +V D +C+EL M + GC PD S+Y+ VI G+ E+V
Sbjct: 243 ALM--IVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKV 290
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK++++I +KP V Y +I F +G + + ++ + P + +++L
Sbjct: 167 ALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCV-PNVVTYSSL 225
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L L D +D + M + GC P+ +Y T+I+GL A +V
Sbjct: 226 LHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKV 270
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFED+ + +P + Y M+ V G G + E L+ L E P+ +N+L
Sbjct: 312 AVTVFEDMIASEC-RPDLWTYNAMVSVHGRCGKAEEAERLFREL-VEKGFMPDAITYNSL 369
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GFK DL V Y+ M+ +GC
Sbjct: 370 LYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGC 429
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +I+ L M +A +G + +D
Sbjct: 430 TPDAVTYTVMIDSLGKMNRIAEAGKVLED 458
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 10/154 (6%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVF-------NSKFRRLLKFDMIAVLRELLRQNHCLLAL 141
+ + +V + RA + LD ++ + F+ + K ++ +L + +
Sbjct: 812 LPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFK-ISKSTVLLLLDAFAKAGDVFEVM 870
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ + K Y P + LY MI + + F+ VE++ ++ +P++ NALL
Sbjct: 871 KIYNGM-KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAG-FKPDLAILNALLN 928
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
D Y + G EPD +Y T+I
Sbjct: 929 MYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI 962
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+LR Q +A++ F K++ Y + Y +I V TNG+ V+ ++ K E
Sbjct: 114 ILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFK-E 172
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------- 238
L + N+L+K + + V+ + MK G EP SY ++NGL
Sbjct: 173 MGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIES 232
Query: 239 -EAMEEVAFSGIIRQDAFKY 257
E + EV +G I D Y
Sbjct: 233 AERVFEVMENGKIGPDVVTY 252
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
L ++L N L ++K KE V +I+ FG G+ + V ++ +K EN
Sbjct: 150 LIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMK-EN 208
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+EP + +N L+ LV K + +E+M+ PD +Y T+I G
Sbjct: 209 GIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKG 258
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 45 SDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLH 104
+D H +++ A LV+ M + + ++ +S +AIQA++ A L
Sbjct: 90 ADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMR----VSADAIQAIRRTGSARLA 145
Query: 105 SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
+P +N R L +FDM + +V+ + ++ P Y MI
Sbjct: 146 LSP--KCYNFALRSLARFDMTEYMG------------RVYSQLVQDGLL-PDTVTYNTMI 190
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF-KLRDLVVDC--YELMKT 221
+ + G YF L E LEPE NAL ++G+ + +L C + +M
Sbjct: 191 KSYCKEGDLTTAH-RYFRLLLEGGLEPETFTCNAL---VLGYCRTGELRKACWLFLMMPL 246
Query: 222 VGCEPDRSSYRTVINGL 238
+GC+ + SY +I GL
Sbjct: 247 MGCQRNEYSYTILIQGL 263
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P D +N+ K M+ ELL+ VF + + P Y +I
Sbjct: 289 PDDFTYNTIIDGYCKISMVQEATELLKD-------AVF------KGFVPDQVTYCSLING 335
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGC 224
G + L F ++P+I +N+L+K CL G L L V M GC
Sbjct: 336 LCAEGDVERALEL-FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV--MNEMAEEGC 392
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
PD +Y VINGL M ++ + ++ DA
Sbjct: 393 HPDIQTYNIVINGLCKMGNISDATVVMNDAI 423
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHV-FNSKFRRLLKFDMIAVLREL---LRQNHCLL------ 139
+ +A+ L + H +D V +N+ F L K I+ L +L ++Q+ L
Sbjct: 433 KTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYN 492
Query: 140 --------------ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A+K+FE++ ++ YKP Y +I G NG + F
Sbjct: 493 ILISSFGRAGKVDEAIKIFEEL-EDSDYKPDTCSYNSLINCLGKNGHLDEAH-MKFKEMC 550
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
E L P++ ++ L++C ++ ++ M GC P+ +Y +++ LE
Sbjct: 551 EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLE 604
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + Y I G Q + + + ++ L+P ++ + L+K L
Sbjct: 724 KEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEM-SDVGLKPNLKTYTTLIKGWARASL 782
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + C+E MK G +PD ++Y ++ L ME ++GI+
Sbjct: 783 PDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 828
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ +FE++ + KP + Y +I G NG + + ++ E L P++ ++ L
Sbjct: 496 AINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTL 553
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C + ++ +E M GC+P+ +Y +++ LE
Sbjct: 554 MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLE 593
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +VFED++K + + + Y MI+ G G L+ + TE L + G+N L
Sbjct: 254 ACQVFEDMKKRHCRRDEYT-YTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTL 311
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE-VAFSGII 250
++ L K+ D + + M GC P+ +Y ++N L A + V G++
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVV 363
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILY--FYLKTENSLEPEIQGFNALLKCLVGF 206
+E+ P V Y+ +++ FG + VE+ Y F +P I +N LL CL
Sbjct: 539 QEKGLNPDVVTYSTLMECFGKT---ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKN 595
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
VD Y MK G PD +Y TV+ L+++
Sbjct: 596 GRTAEAVDLYSKMKQQGLTPDSITY-TVLERLQSV 629
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F + P++ +NA
Sbjct: 459 LACELFQEL-KENCGSSSSRVYAVMIKHLGKAGRLDDA-INMFDEMNKLGCAPDVYAYNA 516
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L+ L + D + M+ GC PD +SY ++NGL+ E++
Sbjct: 517 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDL 562
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +FE++R Q+ +P V Y ++I+ G G +FY P+ N +
Sbjct: 284 ALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRIDEA-YHFFYEMQREGCRPDTIVMNNM 341
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D + ++ M T+ C P +Y T+I L
Sbjct: 342 INFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L +Q +A F RK+ +K V Y ++ + G F + L + E E
Sbjct: 41 LKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGC-E 99
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
P + +N L+ C D + + +M+ VGCEPDR +Y T+I+
Sbjct: 100 PNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLID 145
>gi|410129734|dbj|BAM64814.1| bvCRP-1 [Beta vulgaris]
Length = 517
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT-ENSLEP 191
+Q C +KV + + + + +P + + +I FG G +H+E L Y EN + P
Sbjct: 408 QQGLCEETVKVLQ-VMEAEGIEPNLIMLNILINAFGIAG--RHLEALSIYDHIIENGINP 464
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
+I + L+K L+ K V + Y+ M+ GC PDR +
Sbjct: 465 DIVTYTTLMKALIRAKKFTKVPELYQHMELAGCTPDRKA 503
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A+ ++ D+ KP V +Y +M+ V +F E L + EN P FN
Sbjct: 385 VAMSIWNDMTNAGC-KPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENC-PPNTLTFNT 442
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L++ L ++ + M+ GC P+ +Y +++GL
Sbjct: 443 LIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGL 482
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 100 RAHLHSNP-LDHVFNSKFRRLLKFDMI-AVLRELLRQNHCLLALKVFEDIRKEQWYKPQV 157
R+ LH+ D + + + R+ K ++ A++ L R LAL +FE R E Y V
Sbjct: 190 RSLLHAKKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEG-YGSTV 248
Query: 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL----KCLVGFKLRDLVV 213
++ MI FG NG F L+ + + + P + +N+++ K V F D+VV
Sbjct: 249 HSFSAMISAFGRNGRFPDAVDLFRSMSSWGVV-PNVITYNSIIDAGAKGEVSF---DVVV 304
Query: 214 DCYELMKTVGCEPDRSSYRTVIN 236
Y+ M G PDR +Y ++++
Sbjct: 305 KFYDEMIANGLMPDRLTYNSLLS 327
>gi|414872445|tpg|DAA51002.1| TPA: hypothetical protein ZEAMMB73_961198 [Zea mays]
Length = 765
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 30/141 (21%)
Query: 116 FRRLLKFDMIAVLRELLRQ-NHCLLALK----------VFEDIRKEQWYKPQVSLYADMI 164
RRLL IA +R+ N LLAL VFE++ + + V LY I
Sbjct: 176 IRRLLP---IASHPPPVRETNRLLLALSKENLSDDFRYVFEEMSR-RGLPSNVRLYNICI 231
Query: 165 QVFG-------TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCY 216
FG + GLF ++ +EP+I +N++++ LV G ++ D +V Y
Sbjct: 232 HAFGKWRQLDMSLGLFAAMK------AATPPVEPDICTYNSVIRALVVGGRVPDALV-IY 284
Query: 217 ELMKTVGCEPDRSSYRTVING 237
+ MK+ G EPD +YR V+NG
Sbjct: 285 DEMKSSGIEPDVFTYRAVMNG 305
>gi|297830004|ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328724|gb|EFH59143.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 409
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+++ L + AL++ ++ K++ +P V ++ +I+ F G F+ L ++ E
Sbjct: 208 LIKGLCESGNLEAALQLLDEFPKQK-SRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKE 266
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+EP+ FN L+ L + +D E MK GCEP+ +Y+ V+ GL
Sbjct: 267 R-IEPDTITFNILISGLRKKGRVEEGIDLLERMKLKGCEPNPGTYQEVLYGL 317
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+I +L + R N A K+F ++ KE +P Y ++ G G + V L +
Sbjct: 527 LIDMLYKAGRGNE---AWKIFYEL-KEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ NS P I +N +L CL + +D M GC PD SSY TV+ GL
Sbjct: 583 NS-NSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGL 636
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+I +L + R N A K+F ++ KE +P Y ++ G G + V L +
Sbjct: 527 LIDMLYKAGRGNE---AWKIFYEL-KEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ NS P I +N +L CL + +D M GC PD SSY TV+ GL
Sbjct: 583 NS-NSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGL 636
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
VF+D+R Y P V + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 418 VFDDLR-SAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLISS 475
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L D ++ Y+ M G PD S+Y V++ L
Sbjct: 476 YSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSAL 511
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y +I +G G + L+ +K + ++P+I +N +K V +
Sbjct: 668 KSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-SGVKPDIVTYNIFIKSYVANLM 726
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +D + GC+P+ +Y +++ G
Sbjct: 727 FEEAIDLVRYLVAQGCKPNERTYNSILEG 755
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D +L L + H A KVF+ ++K ++ P + Y +++ +G ++ +Y
Sbjct: 228 DFNRLLDTLCKSRHVEKANKVFDKMKKRRFV-PDIKSYTILLEGWGKEHNLLRLDEVYLE 286
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K + EP++ + L+ K D ++ + M+ C+P Y T+INGL
Sbjct: 287 MKYD-GFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGL 341
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P V ++A +I F NG I F + ++P I G+NA++K F +
Sbjct: 482 QPDVYVFATLIDGFIRNGELDEA-IKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDAL 540
Query: 214 DCYELMKTVGCEPDRSSYRTVING 237
C M +V PD +Y TVI+G
Sbjct: 541 SCLNEMNSVHHAPDEYTYSTVIDG 564
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
V+ ++Q+ ALK+F + K + +KP V Y +I F E ++ +K+
Sbjct: 560 TVIDGYVKQHDMSSALKMFGQMMKHK-FKPNVITYTSLINGFCKKADMIRAEKVFSGMKS 618
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L P + + L+ + +ELM GC P+ +++ +INGL
Sbjct: 619 FD-LVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGL 670
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL- 200
K F+++ K + Y P + ++ M+ ++ NG++ V ++ +K ++ L P++ +N+L+
Sbjct: 580 KAFQEV-KARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIK-QSGLSPDLITYNSLMD 637
Query: 201 ---KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
KC ++ ++ +K+ +PD SY TVING
Sbjct: 638 MYAKCSESWEAEKIL----NQLKSSQVKPDVVSYNTVINGF 674
>gi|384494594|gb|EIE85085.1| hypothetical protein RO3G_09795 [Rhizopus delemar RA 99-880]
Length = 638
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +F R +++P V +Y +I F N ++Q + I F N + P ++ + AL
Sbjct: 516 ALNLFR--RLTGFHQPNVYIYTTLISCFAKNNIYQAINI--FEHMCSNEINPTVETYTAL 571
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ F+ DL + M EP+ ++R + L
Sbjct: 572 LQGCAIFRNSDLAFKIFNHMCERKVEPNEITWRYFLKSL 610
>gi|357506233|ref|XP_003623405.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498420|gb|AES79623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 737
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI-----LYFYLKTENSLEPEIQ 194
ALKV D+ ++ P V + +I +GL ++ L+ + EN L+P +
Sbjct: 414 ALKVLNDMLLGKFCAPDVVTFTTLI-----SGLLDAEKVDEALDLFNRVMPENGLKPGVV 468
Query: 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+N L++CL K + + + M G PD ++Y ++ GL +++
Sbjct: 469 TYNVLIRCLYKLKRPNDAFEVFNNMAGDGITPDSTTYTVIVEGLCECDQI 518
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P D +N+ K M+ ELL+ VF + + P Y +I
Sbjct: 291 PDDFTYNTIIDGYCKISMVQEATELLKD-------AVF------KGFVPDQVTYCSLING 337
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---G 223
G + L F ++P+I +N+L+K G L+ L++ ++M + G
Sbjct: 338 LCAEGDVERALEL-FNEAQAKGIKPDIVVYNSLVK---GLCLQGLILHALQVMNEMAEEG 393
Query: 224 CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
C PD +Y VINGL M ++ + ++ DA
Sbjct: 394 CHPDIQTYNIVINGLCKMGNISDATVVMNDAI 425
>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
Length = 416
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA + V+ L R+ PL N + + + EL + + L L+VF ++K
Sbjct: 22 EAQELVRVLVRSFSDKQPLVKTLNKYVKVMRTEHCFMLFEELGKTDKWLQCLEVFRWMQK 81
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGFNALLKCLVGFKL 208
++WY Y+ +I V G G Q ++ + + NS P+ +NAL+ + K
Sbjct: 82 QRWYVADNGCYSKLISVMGKKG--QTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKD 139
Query: 209 R----DLVVDCYELMKTVG-CEPDRSSYRTV---------INGLEAMEEVAFSGIIRQDA 254
+ + +E MK++ C+P+ +Y + +N + A+ + I+ D
Sbjct: 140 KAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDI 199
Query: 255 FKYYGDLE 262
+ Y G L+
Sbjct: 200 YTYNGVLD 207
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHV----FNSKFRRLLKFDMIAVLRELL 132
+R P R LS +A + +Q L SN + F+ L +D++ +++ L
Sbjct: 59 HRTPRSPHR-LSPQAHRILQTLIHPSFDSNRFHEILPLLFDQPSSSSLSWDILGIIKGLG 117
Query: 133 RQNHCLLALKVFEDIR--KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
N LAL +F+ IR ++ S+ A ++ + G G L L+ + E
Sbjct: 118 FNNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEAD-GFE 176
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
++ G+ +L+ K + + MK VGCEP +Y ++N
Sbjct: 177 VDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILN 222
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
++P V Y ++ + GL + +L + + ++P++ + LL V +L
Sbjct: 316 FRPSVVTYNSLVSAYVRGGLLEDALVLKRKM-VDKGIKPDVYTYTTLLSGFVNAGKEELA 374
Query: 213 VDCYELMKTVGCEPDRSSYRTVI 235
++ +E M+ VGC+P+ ++ +I
Sbjct: 375 MEVFEEMRKVGCKPNICTFNALI 397
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVF++I+ + P + + ++ VFG NG+ V ++ +K + PE FN L+
Sbjct: 410 VKVFKEIKVCKC-SPDIVTWNTLLAVFGQNGMDSEVSGVFEEMK-RSRFAPERDTFNTLI 467
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y+ M G PD S+Y V+ L
Sbjct: 468 SAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATL 505
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALKVF + KE +P + Y ++ V+G G+ I + L P++ +N L
Sbjct: 198 ALKVFGKM-KEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTL 256
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ C L + +D +E +K G PD +Y +++
Sbjct: 257 ISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLD 293
>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
Length = 429
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPE 192
Q C + V + + +E+ ++P + + +I FGT G +H+E L + ++S + P+
Sbjct: 303 QGLCEQTVNVLQ-LMEEEGFEPNLVMLNLLINAFGTAG--RHLEALAVFQHIKDSGMSPD 359
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
+ + L+K + K + V + Y M+ GC PDR +
Sbjct: 360 VVTYTTLMKTFMRAKKFEKVSEVYREMERAGCTPDRKA 397
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 81 LQRGRNLSIEAIQAVQHLKRAHLHSN-PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLL 139
L RG + +A Q+L+R P D +N+ K DM+ ELL+
Sbjct: 190 LMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKD----- 244
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
+F + + P Y +I G + L+ + ++ L+P++ +N+L
Sbjct: 245 --AIF------KGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKD-LKPDLVVYNSL 295
Query: 200 LKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+K G + L++ ++M + GC PD +Y VINGL M ++ + ++ DA
Sbjct: 296 VK---GLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAI 351
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K+ P V Y +I G G Q L+ + T N P FN +L CL
Sbjct: 571 KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASM-TGNGCPPNTITFNTILDCLCKNDE 629
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
DL + M T+ C PD ++ T+I+GL
Sbjct: 630 VDLALKMLYKMTTMNCMPDVLTFNTIIHGL 659
>gi|242066162|ref|XP_002454370.1| hypothetical protein SORBIDRAFT_04g029550 [Sorghum bicolor]
gi|241934201|gb|EES07346.1| hypothetical protein SORBIDRAFT_04g029550 [Sorghum bicolor]
Length = 952
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK- 184
A+L+ R + AL+ F + + +Y P Y +++ G+ F+H+ LY ++
Sbjct: 733 AILKRCKRNSRA--ALQFFSWVGRRPYYMPTTKTYNTAMKLAGSAKDFKHMRYLYKEMEM 790
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
EN EP + F+AL++ + + ++ MK G PD +Y ++ L
Sbjct: 791 KENGCEPTVVTFSALIRGYMAMGMVSEAWAVFQQMKMRGPAPDFETYSMFMSCL 844
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 124 MIAVLRELLRQNHCLL-ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
+ L + LR+N + A +FE++R +KP V + ++ + G + +
Sbjct: 203 VFGCLLDALRKNGSVKEAASLFEELRYR--WKPSVKHFTSLLYGWCKEGKLMEAKHVLVQ 260
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVINGL- 238
+K + +EP+I +N LL G+ D + D Y+L+K + GCEP+ +SY +I L
Sbjct: 261 MK-DAGIEPDIVVYNNLLG---GYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLC 316
Query: 239 --EAMEEVA 245
E +EE
Sbjct: 317 KHERLEEAT 325
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L R+ LL++++ ++IR + Y+ L +I +G GL ++ ++ + ++
Sbjct: 120 LFRKGPLLLSMELLKEIR-DSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFL-GMK 177
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P + +NA++ LV DL ++ M++ GC+PDR +Y +I+G+
Sbjct: 178 PSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGV 225
>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
Length = 480
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++FE +RK+ WY+P+ YA ++ + G L+ + +E L P + AL
Sbjct: 109 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSER-LRPTADVYTAL 167
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGL----------EAMEEVAFSG 248
+ L D + E MK C+PD ++ +IN ++E+++ G
Sbjct: 168 VGAYGYSGLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKSRRFDLIPAVLDEMSYLG 227
Query: 249 I-----IRQDAFKYYGDLEFLEEDEEDIAA 273
I I YG EE E ++A
Sbjct: 228 IECNSVIHNAIIDGYGKAAMFEEMEGALSA 257
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P + MI+ +G G++ + ++ Y+K + P FN +++C + +
Sbjct: 300 EPDTKTFNIMIKSYGKAGMYDKMMSIFRYMK-KRFFSPTAVTFNTVIECFGRAGNIEKME 358
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEA---MEEVAFSGIIRQ-----------------D 253
+ LMK G +P+ +Y +++NG +++V GIIRQ
Sbjct: 359 YYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKV--PGIIRQTENTNVVLDTPFFNCVIS 416
Query: 254 AFKYYGDLEFLEE 266
A+ GD++ +EE
Sbjct: 417 AYAKSGDIKIMEE 429
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+FED++ +P + + ++ FG NG++ V ++ +K + EP+ FN L++
Sbjct: 350 IFEDMQA-CGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMK-KAGFEPDKATFNILIEA 407
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y+ M GC PD +++ T++ L
Sbjct: 408 YGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAAL 443
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 125 IAV-LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
IAV LR L R++ ++F+ +R E+ Y V Y +I N F+ + +F
Sbjct: 85 IAVMLRILGRESQLTTVSRLFKSLR-EEGYPLDVYAYTSLISALSRNRKFKEA-LGFFEQ 142
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLR--DLVVDCYELMKTVGCEPDRSSYRTVIN 236
E +P + +N ++ L G K R + +++ +E MK G +PD +Y T I
Sbjct: 143 MKEAGPQPSLVTYNVIID-LYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAIT 196
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+ V + L +++++++ L R+ AL+VF +R+ ++P A M+++
Sbjct: 33 VSSVLTTSEPNLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRIL 92
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
G V L+ L+ E ++ + +L+ L + + +E MK G +P
Sbjct: 93 GRESQLTTVSRLFKSLR-EEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPS 151
Query: 228 RSSYRTVI-----------NGLEAMEEVAFSGIIRQDAFKY 257
+Y +I N LE EE+ G I+ D + Y
Sbjct: 152 LVTYNVIIDLYGKKGRSWENILELFEEMKAQG-IQPDEYTY 191
>gi|388512253|gb|AFK44188.1| unknown [Medicago truncatula]
Length = 376
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 91 AIQAVQHLKRAHLHSNPLDHVFNSKFRRL-----LKFDMIAV---LRELLRQNHCLLALK 142
++ ++ L A+LHS D V F++L +K D+++ ++ LL + A+
Sbjct: 122 SVLSLNALLAAYLHSKQYD-VVERLFKKLPVQLSVKPDLVSYNTYIKALLEKGSFDSAVS 180
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
V E++ K+ + + + ++ + G F+ E L+ L +N + P I+ +NA L
Sbjct: 181 VLEEMEKD-GVESDLITFNTLLDGLYSKGRFEDGEKLWEKLGEKNVV-PNIRTYNARLLG 238
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262
L K V+ YE M+ G +PD S+ +I G A G + +A K++G++E
Sbjct: 239 LAVAKRAGEAVEFYEEMEKKGVKPDLFSFNALIKGF------ANEGNL-DEAKKWFGEIE 291
Query: 263 FLEED 267
E D
Sbjct: 292 KSEHD 296
>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 878
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++R L R LAL +FE+ R + Y V ++ MI G N F L + +
Sbjct: 196 MIRTLGRLKKIELALDLFEESRT-RGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMG-K 253
Query: 187 NSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVI 235
LEP + +NA++ +L ++VV E M GC PDR +Y +++
Sbjct: 254 FGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLL 303
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V + ++ +G +GLF+H +K+ +P++ ++ L+ C F+ DL+
Sbjct: 164 KPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIE 223
Query: 214 DCYELMKTVGCEPDRSSYRTVING 237
M G E + +Y ++I+G
Sbjct: 224 RVLADMSYSGIECNSVTYNSIIDG 247
>gi|297823431|ref|XP_002879598.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
gi|297325437|gb|EFH55857.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
Length = 497
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL F+ +++ KP V +Y ++ + +G Y + E + +P++ FN L
Sbjct: 176 ALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERA-KPDVCTFNTL 234
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL +D + MK GCEP+ S+ T+I G
Sbjct: 235 INGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGF 273
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE++ K + P Y MI FG G + +F + EP++ +NAL
Sbjct: 149 ARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDT-VCFFEEMKDMCCEPDVITYNAL 206
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259
+ C F + ++ Y MK G +P+ SY T+++ G+++Q A K+Y
Sbjct: 207 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF------CKEGMMQQ-AIKFYV 259
Query: 260 DL 261
D+
Sbjct: 260 DM 261
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A+ ++ C A++VF+ + K+ + +S+ +I FG G + ++ Y+
Sbjct: 504 ALANSYAKRGLCEQAMEVFKSMEKD-GVELNLSMLNLLINAFGVAGKYVEAFSVFDYI-L 561
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
E + P++ + L+K L+ + D V D YE M GC PD
Sbjct: 562 EVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPD 603
>gi|297737368|emb|CBI26569.3| unnamed protein product [Vitis vinifera]
Length = 392
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEP 191
+Q C +KV + + E +P + + +I FG G +H+E L Y +++ + P
Sbjct: 271 QQGLCEQTVKVLQLMETE-GIEPNLIMLNMLINAFGIAG--RHLEALSVYHHIKDTGISP 327
Query: 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
++ ++ L+K + + D V + YE M++ GC PDR +
Sbjct: 328 DVVTYSTLMKACIRARKFDKVPEIYEEMESAGCTPDRKA 366
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F + P++ +NA
Sbjct: 1449 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INMFDEMNKLGCAPDVYAYNA 1506
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++NGL
Sbjct: 1507 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 1546
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNA 198
AL +FE++R Q+ +P V Y ++I+ G G E +F+ + + P+ N
Sbjct: 1274 ALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRID--EAYHFFCEMQREGCRPDTVFMNN 1330
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L D + ++ M+T+ C P +Y T+I L
Sbjct: 1331 MINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 1370
>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 646
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FED++ +P YA +I ++ + G +E ++ + E+ EP I +L
Sbjct: 350 AVKIFEDMKSSGTCRPDSFTYASLINMYSSIGKISEMEAMFNEM-MESGFEPNIIVLTSL 408
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ C K D VV + + +G PD
Sbjct: 409 VHCYGKAKRTDDVVKIFNQLMDLGISPD 436
>gi|3152594|gb|AAC17075.1| Contains repeats similar to RECA protein gb|L26100 from
Acinetobacter calcoaceticus [Arabidopsis thaliana]
Length = 566
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLK 184
+V+ L R+ + A ++ ++ + + P Y+ +I+ G+F +E+L +
Sbjct: 418 SVITSLCRKGNTFAAFQLLYEMTR-CGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEE 476
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL------ 238
+EN +P + FNA++ L + DL ++ +E+M P+ ++Y ++ G+
Sbjct: 477 SENC-KPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDEL 535
Query: 239 ----EAMEEVAFSGIIRQDA 254
E ++E+ +I Q+A
Sbjct: 536 ELAKEVLDELRLRKVIGQNA 555
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 114 SKFRRLLKFDMI-AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
+KFR L K +L L + + LAL F+D+ P V Y +I G
Sbjct: 208 NKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAG-LSPSVFTYNMVIGCLAREGD 266
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232
+ L+ +K + L P+I +N+L+ + V +E MK GCEPD +Y
Sbjct: 267 LEAARSLFEEMKAKG-LRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYN 325
Query: 233 TVINGLEAMEEV 244
++IN E +
Sbjct: 326 SLINCFCKFERI 337
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
V+ L R+ A +FE++ K + +P + Y +I +G G+ ++ +K +
Sbjct: 257 VIGCLAREGDLEAARSLFEEM-KAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMK-D 314
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
EP++ +N+L+ C F+ + MK G +P+ +Y T+I+
Sbjct: 315 AGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAF 366
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A ++F+++ KE +YA MI+ FG G L+ +K + P++ +NA
Sbjct: 453 VANELFQEL-KENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMK-KLGCTPDVYAYNA 510
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ +V + D + M+ GC PD +S+ ++NGL
Sbjct: 511 LMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGL 550
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+ VF+++R + P + + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 403 MAVFDELRS-AGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLI 460
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L DL + Y+ M G PD S+Y V++ L
Sbjct: 461 SSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSAL 498
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y +I +G G + L+ +K + L+P++ +N +K V +
Sbjct: 655 KSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-SGLKPDVVTYNIFVKSYVSNSM 713
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ ++ M T GC+P+ +Y +++ G
Sbjct: 714 FEEAIELVRYMVTQGCKPNERTYNSIVEG 742
>gi|225436849|ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
[Vitis vinifera]
gi|296086664|emb|CBI32299.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A++ + H +F D+++E P + Y +I VFG L H+E + +K
Sbjct: 176 ALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILISVFGRLMLVDHMEATFREIK- 234
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LE 239
E L P I +N ++ V + + + D + MK +PD +++ ++ G L+
Sbjct: 235 ELELSPNISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQPDINTHLLMLRGYAHSGNLQ 294
Query: 240 AMEEV 244
MEE
Sbjct: 295 KMEET 299
>gi|15231886|ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g14580, mitochondrial; Flags: Precursor
gi|9294380|dbj|BAB02390.1| unnamed protein product [Arabidopsis thaliana]
gi|119935972|gb|ABM06049.1| At3g14580 [Arabidopsis thaliana]
gi|332642020|gb|AEE75541.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++ ++ +Q +P V ++ +I+ F G F+ L ++ E +EP+ FN L
Sbjct: 221 ALQLLDEF-PQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER-IEPDTITFNIL 278
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L + +D E MK GCEP+ +Y+ V+ GL
Sbjct: 279 ISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGL 317
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 58 QQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHS----NPLDHVFN 113
Q T S ++ RDRG+ +K + R + ++ +H + + N LDH
Sbjct: 418 QPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAME 477
Query: 114 SKFRRL---LKFDMIA--VLRELLRQN-HCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+ R L ++ D++ L + R++ + A ++FE++ +E+ Y P + Y MI
Sbjct: 478 TYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEM-QERGYLPCPTTYNIMINSL 536
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
G + V+IL ++++ L P + + L+ + +DC E MK+ G +P
Sbjct: 537 GEQEKWDEVKILLGKMQSQGLL-PNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPS 595
Query: 228 RSSYRTVINGL 238
+ Y +IN
Sbjct: 596 ATMYNALINAF 606
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
P+ S + +I G +G + E ++ +K E L+P I+ FNALLK G+ + +
Sbjct: 313 NPKTSTFVAVISALGNHGRTEEAEAIFEEMK-EGGLKPRIKAFNALLK---GYARKGSLK 368
Query: 214 DCYEL---MKTVGCEPDRSSYRTVING 237
+ + M+ G PD +Y +++
Sbjct: 369 EAESIISEMEKSGLSPDEHTYGLLVDA 395
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L R LA ++F D+ ++Q +P LY +I + +GL L +K +
Sbjct: 168 LGRSGQPALAHRLFADM-QQQGCQPTPELYTALIAAYCRSGLLDDALRLLGDMKAAPLCQ 226
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
P++ ++ L+K LV DLV Y+ M G P+ + V++G
Sbjct: 227 PDVYTYSTLIKALVDASRFDLVDAMYKEMAERGVAPNTVTQNIVLSG 273
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFE+I K P + + ++ VFG NG+ V ++ +K + PE +N L+
Sbjct: 264 MKVFEEI-KNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERDTYNTLI 321
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D +D Y+ M G PD S+Y V+ L
Sbjct: 322 SAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAAL 359
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 145 EDIRKE---QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
E++ KE + KP Y +I + NG + ++ ++ E+ L P++ +N +
Sbjct: 509 EEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMR-ESGLVPDVITYNTFVA 567
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ + +D M GC+P++++Y +V++G
Sbjct: 568 SYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDG 603
>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
Length = 643
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+R L+ N A VF+ + E+ +KP + Y ++ +F+ + L ++
Sbjct: 79 MRALIDSNKPYQAHSVFKHLM-EEGHKPSLVTYTILLTALTNQRMFESIPSLLAQVELA- 136
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P+ FNAL+ V K ++ + MK GC P S++ T+I G
Sbjct: 137 GIRPDSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKG 186
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKXRE-ISPDVITYNTMINGYYRVKKIEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL---EAMEEVAFSGIIRQDAFK 256
+K V D + E MK G +P+ +Y T++ GL E M E SGI+++ K
Sbjct: 227 IKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLLPGLCNAEKMSEA--SGILKEMVDK 284
Query: 257 Y 257
Y
Sbjct: 285 Y 285
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V + +I VF G F LY + T ++P++ +N+L+ L D
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 300
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+LM T GC PD +Y T+ING
Sbjct: 301 MLDLMVTKGCLPDVVTYNTLINGF 324
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
A +FE+ K + + V LY+ +I FG G ++ Y L+ + L P + +N
Sbjct: 652 AYMLFEEA-KSKGIELNVVLYSSLIDGFGKVG---RIDEAYLILEEMMKKGLTPNVYTWN 707
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+LL LV + + + C++ MK + C P+ +Y +INGL
Sbjct: 708 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGL 748
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P Y MI +G+ G F+ L L+ E P + FN++L CL + D +
Sbjct: 317 PCAYAYNTMIMGYGSAGRFEDAYKLLERLR-ERGCIPSVVSFNSILTCLGKKRKVDEALS 375
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+E+MK EP+ S+Y +I+ L
Sbjct: 376 LFEVMKK-DAEPNSSTYNIIIDML 398
>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Glycine max]
Length = 572
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++ L R+ + A ++ ++ K + P Y+ +I+ G+ + F + E
Sbjct: 419 LIASLCRKGNTYPAFQMLYEMTK-YGFTPDSYTYSSLIRGMCREGMLDEA-LKIFRILEE 476
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246
N P+I +NAL+ + DL ++ + +M GC P+ ++Y ++ GL EE
Sbjct: 477 NDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDI 536
Query: 247 SGIIRQDAF 255
+ + ++ +
Sbjct: 537 AADLMKELY 545
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 87 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+S +AIQA++ A L +P +N R L +FDM + +V+
Sbjct: 13 VSADAIQAIRRTGSARLALSP--KCYNFALRSLARFDMTEYMG------------RVYSQ 58
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+ ++ P Y MI+ + G YF L E LEPE NAL ++G+
Sbjct: 59 LVQDGLL-PDTVTYNTMIKSYCKEGDLTTAH-RYFRLLLEGGLEPETFTCNAL---VLGY 113
Query: 207 -KLRDLVVDC--YELMKTVGCEPDRSSYRTVINGL 238
+ +L C + +M +GC+ + SY +I GL
Sbjct: 114 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 148
>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 875
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++R L R LAL +FE+ R + Y V ++ MI G N F L +
Sbjct: 195 MIRTLGRLKKIELALNLFEESRN-RGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNF 253
Query: 187 NSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVI 235
LEP + +NA++ +L ++VV E M GC PDR +Y +++
Sbjct: 254 -GLEPNLVTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLL 302
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 68 VIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLD----HVFNSKFRRLLKFD 123
V+EM D +P+ R + S++AI +L + SN +D + NSK + L +
Sbjct: 147 VVEMFDA---IRPIVREKP-SLKAISTCLNLL---VESNQVDLTRKFLLNSK--KSLNLE 197
Query: 124 MIAVLRELLRQNHCL-----LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
+ +L ++HC A +V E+++K P + Y+ +I +G +
Sbjct: 198 PNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 257
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ + +++ + P+ +NAL+ + D + E MK GC P+ +Y ++NG
Sbjct: 258 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 317
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D + RE +++ AL++F+ +++ QW KP +Y MI + G G+ L+
Sbjct: 40 DFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFED 99
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ N +E + F AL+ + + MK P+ +Y TVIN
Sbjct: 100 MPL-NDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVIN 152
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 36/147 (24%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184
+ L E ++ C +++ KE+ +P V+ Y +IQVFG G FQ I F+
Sbjct: 288 FSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQE-SINLFWDL 346
Query: 185 TENSLEPEIQ-----------------------------------GFNALLKCLVGFKLR 209
+ +EP++ GF L+ L
Sbjct: 347 LDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALY 406
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ MK GC+PD +Y +I
Sbjct: 407 SEATYAFNSMKESGCKPDLETYNALIG 433
>gi|30699392|ref|NP_178029.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806390|sp|A3KPF8.1|PP131_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79080, chloroplastic; Flags: Precursor
gi|126352286|gb|ABO09888.1| At1g79080 [Arabidopsis thaliana]
gi|332198080|gb|AEE36201.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 576
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLK 184
+V+ L R+ + A ++ ++ + + P Y+ +I+ G+F +E+L +
Sbjct: 428 SVITSLCRKGNTFAAFQLLYEMTR-CGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEE 486
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL------ 238
+EN +P + FNA++ L + DL ++ +E+M P+ ++Y ++ G+
Sbjct: 487 SENC-KPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDEL 545
Query: 239 ----EAMEEVAFSGIIRQDA 254
E ++E+ +I Q+A
Sbjct: 546 ELAKEVLDELRLRKVIGQNA 565
>gi|255550708|ref|XP_002516403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544501|gb|EEF46020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P + +Y +I + NG F +LK E +L P +N L++ +K+ D +
Sbjct: 166 PSLQVYNSLIHGYARNGKFDDAVFYLNHLK-EINLSPVSDTYNGLIQAYGKYKMYDEMGM 224
Query: 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
C + M+ GC PD +Y +I +E+A +G++ +
Sbjct: 225 CLKKMEMEGCSPDHVTYNLLI------QELAEAGLLTR 256
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A++ FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 161 AIRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 218
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 219 IKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 277
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F I E KP V +Y ++ + FQ + LY +K ++ L P + +N L
Sbjct: 128 ALKMFYRI-GEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK-KDGLIPNVFTYNIL 185
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LK L D + M GC PD +Y T+++ L
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 136 HCLLALK-------VFEDIR-KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
HCL+ LK +F ++ K+ P V + MI ++ G ++ E + + E
Sbjct: 298 HCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAE- 356
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+P I +NALL + + + + +K G PD SY +++N
Sbjct: 357 GLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNA 406
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F I E KP V +Y ++ + FQ + LY +K ++ L P + +N L
Sbjct: 128 ALKMFYRI-GEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK-KDGLIPNVFTYNIL 185
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LK L D + M GC PD +Y T+++ L
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224
>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 555
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + + P+ Y I F + GL L+ +++TE S P + ++
Sbjct: 274 AMKVLEEMIQMK-HTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYS 332
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ L + +C+EL M+ GC PD S+Y+ +I G+
Sbjct: 333 IMIAALAKAGQME---ECFELISEMRKCGCMPDVSTYKDLIEGM 373
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V++Y M+ G F+H + + F+ T+ + P+ FN L+ L +D
Sbjct: 543 PNVNVYNIMLHNLCKVGHFKHAQKI-FWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALD 601
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
++ M+T G EPD ++R +I+GL
Sbjct: 602 LFKEMRTKGVEPDNLTFRYIISGL 625
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V++Y M+ G F+H + + F+ T+ + P+ FN L+ L +D
Sbjct: 543 PNVNVYNIMLHNLCKVGHFKHAQKI-FWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALD 601
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
++ M+T G EPD ++R +I+GL
Sbjct: 602 LFKEMRTKGVEPDNLTFRYIISGL 625
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V + +I VF G F LY + T ++P++ +N+L+ L D
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 241
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+LM T GC PD +Y T+ING
Sbjct: 242 MLDLMVTKGCLPDVVTYNTLINGF 265
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P Y +I +G +F +E + ++ EP++ N+ ++ G +++
Sbjct: 133 RPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMME 192
Query: 214 DCYELMKTVGCEPDRSSYRTVING-------------LEAMEEVAFSGIIRQ-----DAF 255
+CYE ++ G EP+ ++ +++ +E M+ +S I DAF
Sbjct: 193 NCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAF 252
Query: 256 KYYGDLEFLE 265
GDL+ +E
Sbjct: 253 GRAGDLKQME 262
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 46/144 (31%)
Query: 136 HC---LLALKVFEDIRKEQWYKPQVSLYADMI---------------------------- 164
HC LL+ VFE +R++ WY+P +Y +I
Sbjct: 6 HCAGLLLSRLVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTH 65
Query: 165 -------QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK-CLVGF---KLRDLVV 213
+G +GLF + +K P++ ++ L+K CL F K++ L+
Sbjct: 66 ESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLS 125
Query: 214 DCYELMKTVGCEPDRSSYRTVING 237
D M+++G P+ +Y TVI+
Sbjct: 126 D----MESLGIRPNTVTYNTVIDA 145
>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
Length = 555
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + + P+ Y I F + GL L+ +++TE S P + ++
Sbjct: 274 AMKVLEEMIQMK-HTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYS 332
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ L + +C+EL M+ GC PD S+Y+ +I G+
Sbjct: 333 IMIAALAKAGQME---ECFELISEMRKCGCMPDVSTYKDLIEGM 373
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
+L++ ED+R+ KP V Y+ +I V FQ L ++ S P + +N++
Sbjct: 318 SLELLEDMRR-NGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGS-PPNVVTYNSV 375
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D V YE+M C PD +Y ++NGL
Sbjct: 376 MDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGL 414
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
KF ++ L + +ALKVFED P V Y+ +I G L+
Sbjct: 147 KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDC-PPDVVAYSTLIAGLCKTGRLDEACKLF 205
Query: 181 FYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ ENS EP++ F AL+ L G +L++ E M+ C P+ +Y ++I+GL
Sbjct: 206 EKMR-ENSCEPDVVTFTALMDGLCKGDRLQE-AQQVLETMEDRNCTPNVITYSSLIDGL 262
>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+VFE ++++ +Y P+ Y ++ + G G Q L+ + E +EP + + AL
Sbjct: 113 ALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEM-VEEGIEPTAELYTAL 171
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVING 237
L L D + MKT+ C PD +Y T++
Sbjct: 172 LAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKA 210
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
++ KP + +I FG + ++ Y+K EN L+P++ + L+K L+ +
Sbjct: 613 RDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMK-ENDLKPDVVTYTTLMKALILVEK 671
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
D V YE M GC PDR + + + L+ M++
Sbjct: 672 FDKVPSVYEEMILSGCTPDRKARAMLRSALKYMKQT 707
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
+L++ ED+R+ KP V Y+ +I V FQ L ++ S P + +N++
Sbjct: 318 SLELLEDMRR-NGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGS-PPNVVTYNSV 375
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D V YE+M C PD +Y ++NGL
Sbjct: 376 MDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGL 414
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL L + H L A K + E+ +P +YA +I F + ++ +++
Sbjct: 454 VLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME-H 512
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P+I NA++K F + + C M+ VGC PD +Y TVI+G
Sbjct: 513 KGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 563
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ ++ D+ + KP V +Y +M+ VF +F + L + EN P FN L
Sbjct: 360 AISIWNDMSRSGC-KPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENC-PPNTVTFNTL 417
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L + + + M+ GC P+ +Y +I+GL
Sbjct: 418 IRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGL 456
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 90 EAIQAVQHLKRAHL-----HSNPLDHVF-----NSKFRRLLKFDMIA------------V 127
EAIQ +KR + N L H F +R K DMI +
Sbjct: 210 EAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFK-DMIGAGARPTVFTYNIM 268
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+ + ++ A +FE++ K + P Y MI FG G + +F +
Sbjct: 269 IDCMCKEGDVEAARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDT-VCFFEEMKDM 326
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
EP++ +NAL+ C F + ++ Y MK G +P+ SY T+++
Sbjct: 327 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF------CKE 380
Query: 248 GIIRQDAFKYYGDL 261
G+++Q A K+Y D+
Sbjct: 381 GMMQQ-AIKFYVDM 393
>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 870
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 32/204 (15%)
Query: 62 ATRSMLVIEMRDRGQNRKP---------LQRGRNLSIEAIQAVQHLKRAHLHSNPLDHV- 111
AT L+ M D G P L+RG EA + + ++ N L +
Sbjct: 162 ATGLELMGMMEDEGITPNPYHYNSMFMALERGERWR-EAAELFRKMRACGTRPNALTYAP 220
Query: 112 FNSKFRRLLKFDMI-AVLRELLRQ-------------NHCLLALK------VFEDIRKEQ 151
R K DM AVL+E+LR+ N C A K VFED++K+
Sbjct: 221 LIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKA 280
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
KP Y +I G G + + + + E L P++ F L+ R+
Sbjct: 281 GVKPDNVTYNTVINALGRCGRVKEATV-HLHAMKEQGLSPDVVTFGTLIHACAQSAKREP 339
Query: 212 VVDCYELMKTVGCEPDRSSYRTVI 235
+ + + + G +P+ +Y+ I
Sbjct: 340 ALALFAELVSRGLKPNLEAYKGCI 363
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ L + C A K+F+ + K + KP ++ Y ++ + + G + L L
Sbjct: 117 SLMDYLCKNGKCTEARKIFDSMVK-RGLKPDITTYGTLLHGYASKGALVEMHDL-LALMV 174
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+N ++ + FN L+ + D VV + M+ G P+ +YRTVI+GL
Sbjct: 175 QNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGL 227
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL++L Q+H +AL F ++++ + Y M+ + G F + L + +
Sbjct: 353 VLKQL--QDH-TVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQM-VK 408
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ +P + +N L+ + VD + M+ VGCEPDR +Y T+I+
Sbjct: 409 DGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLID 458
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ F +R + KP + +I FG + + Y+K EN L+P++ + L
Sbjct: 604 AVSAFRAMRVDGL-KPSLLALNSLINAFGEDRRDAEAFTVLQYMK-ENDLKPDVVTYTTL 661
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+K L+ + D V YE M GC PDR + + + L+ M++
Sbjct: 662 MKALIRVEKFDKVPSVYEEMILSGCTPDRKARAMLRSALKYMKQT 706
>gi|242038361|ref|XP_002466575.1| hypothetical protein SORBIDRAFT_01g010260 [Sorghum bicolor]
gi|241920429|gb|EER93573.1| hypothetical protein SORBIDRAFT_01g010260 [Sorghum bicolor]
Length = 771
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT-NGLFQHVEILYFYLKT 185
+L L ++N C VFE++ + + V LY I FG L + +
Sbjct: 196 LLLALSKENLCDDFRYVFEELSR-RGLPSNVRLYNICIHAFGKWRQLGMSLRLFAAMKAA 254
Query: 186 ENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------- 237
+ P+I +N++++ LV G ++ D +V ++ MK+ G EPD +YR V+NG
Sbjct: 255 TPPVSPDICTYNSVIRALVVGARVPDALV-IFDEMKSSGIEPDVFTYRAVMNGCCKSFRM 313
Query: 238 ---LEAMEEVAFSGIIRQDAFKYYGDLEFL 264
L +E+ S ++ D Y L+ L
Sbjct: 314 DDALRVFQEMRGSSGVKSDVVVYNSLLDGL 343
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHV---------------EILYFYL---KTENSLE 190
KEQ P + Y ++ V+G +G ++ +Y L + L
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLR 560
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
P++ + L+K L+ + D V YE M T GC PDR + + +GL+
Sbjct: 561 PDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSGLK 609
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K K V +Y+ +I FG G ++ L + L P + +N L
Sbjct: 668 AYMLFEE-AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCL 725
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + + C++ MK + C P++ +Y +INGL
Sbjct: 726 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 764
>gi|212275500|ref|NP_001130935.1| uncharacterized protein LOC100192040 [Zea mays]
gi|194690482|gb|ACF79325.1| unknown [Zea mays]
Length = 380
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + P+ Y I F + GL L+ +++TE P + ++
Sbjct: 99 AMKVLEEM-IQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYS 157
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ V D + +C+EL M++ GC PD ++Y+ +I G+
Sbjct: 158 IMI---VALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGM 198
>gi|110742004|dbj|BAE98941.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 497
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL F+ +++ KP V +Y ++ + +G Y + E + +P++ FN L
Sbjct: 176 ALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERA-KPDVCTFNIL 234
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL +D + MK GCEP+ S+ T+I G
Sbjct: 235 INGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGF 273
>gi|79568177|ref|NP_181166.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206301|sp|Q9SJN2.1|PP187_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36240
gi|4510352|gb|AAD21441.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254126|gb|AEC09220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 497
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL F+ +++ KP V +Y ++ + +G Y + E + +P++ FN L
Sbjct: 176 ALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERA-KPDVCTFNIL 234
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL +D + MK GCEP+ S+ T+I G
Sbjct: 235 INGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGF 273
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
+ N+ AL +FE++R Q+ +P V Y ++I+ G G F + ++ E
Sbjct: 271 FFKLNNVHGALGLFEEMR-HQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGC-R 328
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P+ N ++ L D V +E M T+ C P +Y T+I L
Sbjct: 329 PDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKAL 376
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A ++F+++ KE +YA MI+ G G L+ + + P + +NA
Sbjct: 455 IAHELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM-NKLGCTPNVYAYNA 512
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++NGL
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGL 552
>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
Length = 704
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 119 LLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
+L+ D I VL + LLAL+ F+D+ K Q Y ++VF + E
Sbjct: 144 ILERDAILVLNNMSNSQTALLALRYFQDMLKSS---KQTIFYNVTLKVFRKCRDMEGAEK 200
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-- 236
L+ + ++P+ F+ ++ C L V+ +E M + C PD +Y T+I+
Sbjct: 201 LFEEM-INRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAY 259
Query: 237 GLEAMEEVAFS 247
G ++AFS
Sbjct: 260 GRAGNVDMAFS 270
>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
Length = 520
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + P+ Y I F + GL L+ +++TE P + ++
Sbjct: 239 AMKVLEEM-IQMKHTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYS 297
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ V D + +C+EL M++ GC PD ++Y+ +I G+
Sbjct: 298 IMI---VALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGM 338
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 61/286 (21%)
Query: 39 AKSASWSDVKV--KPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQ 96
A + W ++ K + Q + S ++ RD+G+ +K Q +++ +Q +
Sbjct: 357 AHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDR 416
Query: 97 HLKRAHLHS----NPLDHVFNSKFRRLL----------------------KFDMIAVLRE 130
H + + N LDH + F R+L + DM L
Sbjct: 417 HFYNVMIDTFGKYNCLDHAM-ATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFS 475
Query: 131 LLRQ---NHCLLALKVFEDIRKEQ--W--------------YKPQVSLYADMIQVFGTNG 171
++Q + C+ + + EQ W +P Y ++ V+G +G
Sbjct: 476 EMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSG 535
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
F LK+ +P +NAL+ L +L V+ + LM T G P +
Sbjct: 536 RFSDAIECLEVLKS-TGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLAL 594
Query: 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED--EEDIAAYC 275
++IN G R+DA + + L++++E+ E D+ Y
Sbjct: 595 NSLINAF---------GEDRRDA-EAFAVLQYMKENNIEPDVVTYT 630
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA+ F + E P + +I FG + + Y+K EN++EP++ +
Sbjct: 574 LAVNAFRLMTTEGL-TPSLLALNSLINAFGEDRRDAEAFAVLQYMK-ENNIEPDVVTYTT 631
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L+K L+ + V YE M GC PDR + + + L M++
Sbjct: 632 LMKALIRVEKFQKVPAVYEEMVASGCTPDRKARAMLRSALRYMKQT 677
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GFKLRDLV 212
P+ S +I G +G E L+ ++ EN LEP + +NALLK V L+D
Sbjct: 273 NPKPSTLVAVILALGNSGRTHEAEALFEEIR-ENGLEPRTRAYNALLKGYVRTGSLKDAE 331
Query: 213 VDCYELMKTVGCEPDRSSYRTVIN 236
E M+ G +PD +Y +I+
Sbjct: 332 FVVSE-MEKAGVKPDEQTYSLLID 354
>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 490
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+K+ E++ + +KP+ Y I F G+ L+ ++ T+ S+ P + F
Sbjct: 185 AMKLLEEM-IQAGHKPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTF- 242
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
AL+ +V D +C+EL M + GC PD S+Y+ VI G+
Sbjct: 243 ALM--IVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGM 284
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ ++ D+ + KP V +Y +M+ VF +F + L + EN P FN L
Sbjct: 383 AISIWNDMSRSGC-KPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENC-PPNTVTFNTL 440
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L + + + M+ GC P+ +Y +I+GL
Sbjct: 441 IRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGL 479
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F + P++ +NA
Sbjct: 459 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INMFDEMNKLGCAPDVYAYNA 516
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++NGL
Sbjct: 517 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 556
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +FE++R Q+ +P V Y ++I+ G G +FY P+ N +
Sbjct: 284 ALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRIDEA-YHFFYEMQREGCRPDTVVMNNM 341
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D + ++ M T+ C P +Y T+I L
Sbjct: 342 INFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 117 RRLLKFDMI--AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
R+ L+ D++ + L CL K D E+ P V +Y+ +I F GL++
Sbjct: 73 RKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWR 132
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD----LVVDCYELMKTVGCEPDRSS 230
+ + TE ++P++ + C++G +D +D ++LM G EP +
Sbjct: 133 EATAV-LHTMTERGIQPDVYTYT----CMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187
Query: 231 YRTVINGLEAMEEVAFSGIIRQDAFKYY 258
Y +INGL G I DAFK +
Sbjct: 188 YNVLINGL------CKEGCI-GDAFKIF 208
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++FED+++ KP +Y +I+ +G N + F L ++ +EP +N++
Sbjct: 194 AMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKA-MRIFRLMQQDGVEPNTVTYNSI 252
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ E M + G EPD ++ T+I G
Sbjct: 253 IDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIKG 290
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
VF++IR + P V + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 409 VFDEIR-SAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYV-PERDTYVSLISS 466
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L D ++ Y+ M G PD S+Y V++ L
Sbjct: 467 YSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSAL 502
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y MI +G G + L+ +K + L P+I +N +K V +
Sbjct: 659 KSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKC-SGLVPDIVTYNIFVKSYVANSM 717
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ +D M T GC+P+ +Y T++
Sbjct: 718 FEEAIDLVRYMVTHGCKPNERTYNTIL 744
>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Glycine max]
Length = 515
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 112 FNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG 171
NSK +LL ++ L E + ALKVFE + ++ WYKP +Y +I + G
Sbjct: 114 INSK--KLLPRTVLEALHERVTALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCK 171
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSS 230
+ L+ + E + + + + ALL L D E MK T GC+PD +
Sbjct: 172 QPEKAHELFQAMVDEGCV-LDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQT 230
Query: 231 YRTVING 237
Y ++
Sbjct: 231 YSILLKS 237
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
KF ++ L + +ALKVFED P V Y+ +I G L+
Sbjct: 266 KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDC-PPDVVAYSTLIAGLCKAGRLDEACKLF 324
Query: 181 FYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ ENS EP++ F AL+ L G +L++ E M+ C P+ +Y ++I+GL
Sbjct: 325 EKMR-ENSCEPDVVTFTALMDGLCKGDRLQE-AQQVLETMEDRNCTPNVITYSSLIDGL 381
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+ VF++ R + P + + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 385 MAVFDEFR-SAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLI 442
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L DL + Y+ M G PD S+Y V++ L
Sbjct: 443 SSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSAL 480
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y +I +G G + L+ +K + L+P++ +N +K V +
Sbjct: 637 KSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-SGLKPDVVTYNIFVKSYVSNSM 695
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ ++ M T GC+P+ +Y +++ G
Sbjct: 696 FEEAIELVRYMVTQGCKPNERTYNSIVEG 724
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ ++ D+ + KP V +Y +M+ VF +F + L + EN P FN L
Sbjct: 387 AISIWNDMSRSGC-KPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENC-PPNTVTFNTL 444
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L + + + M+ GC P+ +Y +I+GL
Sbjct: 445 IRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGL 483
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+ VF++ R + P + + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 403 MAVFDEFR-SAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLI 460
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L DL + Y+ M G PD S+Y V++ L
Sbjct: 461 SSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSAL 498
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y +I +G G + L+ +K + L+P++ +N +K V +
Sbjct: 655 KSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-SGLKPDVVTYNIFVKSYVSNSM 713
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ ++ M T GC+P+ +Y +++ G
Sbjct: 714 FEEAIELVRYMVTQGCKPNERTYNSIVEG 742
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALKV+E ++KE P S Y+ +I + G G V+ + ++ + + P++ +N L
Sbjct: 400 ALKVYEKMKKEGCV-PDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQ-GVTPDVLTYNTL 457
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ C + + M+ V C+PD +Y ++
Sbjct: 458 ISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLL 493
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F + P++ +NA
Sbjct: 426 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INMFDEMNKLGCAPDVYAYNA 483
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++NGL
Sbjct: 484 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 523
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNA 198
AL +FE++R Q+ +P V Y ++I+ G G E +F+ + + P+ N
Sbjct: 251 ALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRID--EAYHFFCEMQREGCRPDTVFMNN 307
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L D + ++ M+T+ C P +Y T+I L
Sbjct: 308 MINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 347
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K K V +Y+ +I FG G ++ L + L P + +N L
Sbjct: 423 AYMLFEE-AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCL 480
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + + C++ MK + C P++ +Y +INGL
Sbjct: 481 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 519
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
R L F + VL+ Q LALK F+ ++++ YK V Y MI + G F+
Sbjct: 30 RTLSAFHINEVLK---HQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEAC 86
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L ++ E EP + +N L+ + + M+ GC PDR +Y T+++
Sbjct: 87 SRLLQEMRREGC-EPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVD 145
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F + P++ +NA
Sbjct: 64 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INMFDEMNKLGCAPDVYAYNA 121
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++NGL
Sbjct: 122 LMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNGL 161
>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62470, mitochondrial-like [Glycine max]
Length = 510
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 111 VFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
V+N R D++A +L LL+ A+K+FE I K + P V Y MIQ F
Sbjct: 225 VWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFE-IMKAKGPSPNVRSYTIMIQDF 283
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GF---KLRDLVVDCYELMKTVG 223
L I YF + + +P+ AL CL+ GF K D+V + M+ G
Sbjct: 284 CKQKLMGEA-IEYFDVMVDRGCQPDA----ALYTCLITGFGRQKKMDMVYSLLKEMRERG 338
Query: 224 CEPDRSSYRTVI 235
C PD +Y +I
Sbjct: 339 CPPDGRTYNALI 350
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 21/189 (11%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQA------VQHLKRAHLHSNPLDHVFNSKFRR 118
S L++EM RG + G + + + K A P +++N
Sbjct: 276 SDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISG 335
Query: 119 LLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
L K M++ + LL + EQ +P +Y +I F +
Sbjct: 336 LCKKRMLSAAKNLLEE-------------MLEQKVQPDKFIYTTLIDGFVRSDKLSDARK 382
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ ++ E P+I +N ++K F + V C M+ GC PD +Y T+++G
Sbjct: 383 IFEFM--EEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGY 440
Query: 239 EAMEEVAFS 247
+++ S
Sbjct: 441 AKKGDISAS 449
>gi|449445529|ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
gi|449523383|ref|XP_004168703.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Cucumis sativus]
Length = 803
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN----SLEPEIQGFN 197
KVF+ +R + ++ V Y I FG G L+ +K ++ S P++ +N
Sbjct: 230 KVFDKLRAIESFEFSVYGYNICIYAFGCWGYLDTALSLFKEMKEKSLVSESFSPDLCTYN 289
Query: 198 ALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+++ CLVG K++D ++ +E +K G EPD +YR +I G
Sbjct: 290 SIIHVLCLVG-KVKDALI-VWEELKGSGHEPDAFTYRIIIQG 329
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
A +FE+ K + + V LY+ +I FG G ++ Y L+ + L P + +N
Sbjct: 518 AYMLFEEA-KSKGIELNVVLYSSLIDGFGKVG---RIDEAYLILEEMMKKGLTPNVYTWN 573
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+LL LV + + + C++ MK + C P+ +Y +INGL
Sbjct: 574 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGL 614
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P Y MI +G+ G F+ L L+ E P + FN++L CL + D +
Sbjct: 183 PCAYAYNTMIMGYGSAGRFEDAYKLLERLR-ERGCIPSVVSFNSILTCLGKKRKVDEALS 241
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+E+MK EP+ S+Y +I+ L
Sbjct: 242 LFEVMKK-DAEPNSSTYNIIIDML 264
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
A +FE+ K + + V LY+ +I FG G ++ Y L+ + L P + +N
Sbjct: 386 AYMLFEEA-KSKGIELNVVLYSSLIDGFGKVG---RIDEAYLILEEMMKKGLTPNVYTWN 441
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+LL LV + + + C++ MK + C P+ +Y +INGL
Sbjct: 442 SLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGL 482
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P Y MI +G+ G F+ L L+ E P + FN++L CL + D +
Sbjct: 51 PCAYAYNTMIMGYGSAGRFEDAYKLLERLR-ERGCIPSVVSFNSILTCLGKKRKVDEALS 109
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+E+MK EP+ S+Y +I+ L
Sbjct: 110 LFEVMKK-DAEPNSSTYNIIIDML 132
>gi|48525335|gb|AAT44969.1| At2g36240 [Arabidopsis thaliana]
gi|50198948|gb|AAT70477.1| At2g36240 [Arabidopsis thaliana]
Length = 379
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL F+ +++ KP V +Y ++ + +G Y + E + +P++ FN L
Sbjct: 58 ALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERA-KPDVCTFNIL 116
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL +D + MK GCEP+ S+ T+I G
Sbjct: 117 INGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGF 155
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+ VF+D+R + P V + ++ VFG NGL V ++ +K + PE + +L+
Sbjct: 409 MAVFDDLR-SAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYV-PERDTYVSLI 466
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L D ++ Y+ M G PD S+Y V++ L
Sbjct: 467 SSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSAL 504
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K +P Y MI +G G + L+ +K+ + L P+I +N +K V +
Sbjct: 661 KSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS-SGLIPDIVTYNIFVKSYVANSM 719
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ +D M T GC+P+ +Y +++
Sbjct: 720 FEEAIDLVRYMVTRGCKPNERTYNSIL 746
>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Glycine max]
Length = 648
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 111 VFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
V+N R D++A +L LL+ A+K+FE I K + P V Y MIQ F
Sbjct: 363 VWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFE-IMKAKGPSPNVRSYTIMIQDF 421
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GF---KLRDLVVDCYELMKTVG 223
L I YF + + +P+ AL CL+ GF K D+V + M+ G
Sbjct: 422 CKQKLMGEA-IEYFDVMVDRGCQPDA----ALYTCLITGFGRQKKMDMVYSLLKEMRERG 476
Query: 224 CEPDRSSYRTVI 235
C PD +Y +I
Sbjct: 477 CPPDGRTYNALI 488
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+ F+D+ K + P Y +I + E L+ +K NS EP + + +
Sbjct: 273 ALRFFDDM-KTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNS-EPSVVTYTTM 330
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K + D + +E M++ G EP+ ++Y T++ GL
Sbjct: 331 IKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGL 369
>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 794
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
L A KV +Q P + A ++ F +G F+ + L F L E ++P + G+N
Sbjct: 433 LPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKL-FELTIEKGIDPGVVGYN 491
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
A++K F + + C++ M PD +Y T+I+G M ++
Sbjct: 492 AMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDL 538
>gi|357119238|ref|XP_003561352.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Brachypodium distachyon]
Length = 732
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL L H ALK+F+++ E +P +A +++ G G+ + + + ++ E
Sbjct: 241 VLGALAAAGHVEDALKLFDEM-SEGGVRPMPVTFAIIVRALGHAGMTERILEMIGRMRDE 299
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P++ + AL+K ++ + + +E M T G EPD +Y T++ GL
Sbjct: 300 -VCRPDVFVYTALVKTMMRRGHIEGCIRVWEEMGTDGVEPDAMAYATMVGGL 350
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALKV+E ++KE P S Y+ +I + G G V+ + ++ + + P++ +N L
Sbjct: 423 ALKVYEKMKKEGCV-PDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQ-GVTPDVLTYNTL 480
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ C + + M+ V C+PD +Y ++
Sbjct: 481 ISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLL 516
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 98 LKRAHLHSNPLDHVFNSKF---RRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQ 151
L +AHL SN + F RR K D+ A +L L + N VF+D++++
Sbjct: 48 LLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKH 107
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+P Y MI++ G G + F TE P + +N +++ L ++ D
Sbjct: 108 C-EPDEYTYTIMIRMTGKIGKADE-SLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDK 165
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGLEA 240
+ + M C P+ ++ ++N L A
Sbjct: 166 TIFLFSKMVENNCRPNGFTFSVILNVLVA 194
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FE++ KP + + +I G NG + + ++ E L P++ ++ L
Sbjct: 338 AVKIFEELENSSC-KPDIISFNSLINCLGKNGDIDEAHMRFKEMR-EEGLSPDVVTYSTL 395
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C ++ ++ M GC P+ +Y +++ LE
Sbjct: 396 IECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 435
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+ FED+ K + P + + MI F E L+ +K N + P + + +
Sbjct: 274 ALRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKG-NKIGPSVVSYTTM 331
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K + D + +E M++ G EP+ ++Y T++ GL
Sbjct: 332 IKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGL 370
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
V+ L LAL++F + K P + Y+ +IQ G G + E ++ LK
Sbjct: 615 TVINGLCNNGAIPLALEMFNKMVKHGCL-PNLHTYSSLIQALGQEGRVEEAEEMFSELKK 673
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
+ + E+ + C++ K+ D D M GC+P +Y +I GL+
Sbjct: 674 QGLIPDEVTYVKMIEVCVMSGKV-DRAFDFLGEMINAGCQPTLQTYDVLIKGLQ 726
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K+F D++K+ KP V Y +I + + I F+ + + + P +NAL
Sbjct: 352 AWKIFIDMKKKGC-KPNVYTYTSLI----SGQRVSRMAIGLFHRMSRDGVVPNTVTYNAL 406
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ L+ D + + +M GC P+ SSY +I G
Sbjct: 407 MNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRG 444
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 62 ATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLK 121
A +M ++E RDR P GR I I++ + N LD +F+ + ++
Sbjct: 141 AKVAMRLLESRDR-----PAAVGR-ARIHMIKSCSNKAEMTQALNYLD-MFSQRGPKMGL 193
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE-ILY 180
F +L +L + N + + I +E +P + +Y +I +G + E I+
Sbjct: 194 FTYTTLLIQLNKLNMTSTVMDRYHQILRE-GLQPNLLIYNSVINALCKDGNVRDAESIIN 252
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
K+ ++P+ + +++ + D + + M GCEP+ ++Y T+INGL
Sbjct: 253 KVFKS--GMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGL 308
>gi|413932621|gb|AFW67172.1| PHD finger protein [Zea mays]
Length = 1166
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+KV E++ + + + P+ Y I F + GL L+ +++TE P + ++
Sbjct: 631 AMKVLEEMIQMK-HTPESFTYVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTAKTYS 689
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ V D + +C+EL M++ GC PD ++Y+ +I G+
Sbjct: 690 IMI---VALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGM 730
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++FE++ + KP V Y MI G NG +L+ ++ E +P++ ++ L
Sbjct: 236 ASELFEEM-DDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQ-EKGYDPDVFTYSIL 293
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C D+ ++ M GC P+ +Y +++ LE
Sbjct: 294 IECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLE 333
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F + P++ +NA
Sbjct: 64 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INMFDEMNKLGCAPDVYAYNA 121
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++NGL
Sbjct: 122 LMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIILNGL 161
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL-- 200
F+++ K + Y P + ++ M+ ++ NG++ ++ +K + L P++ +N+L+
Sbjct: 583 AFQEV-KARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIK-RSGLSPDLITYNSLMDM 640
Query: 201 --KCLVGFKLRDLV--VDCYELMKTVGCEPDRSSYRTVINGL 238
KC ++ ++ + C + MK PD SY TVING
Sbjct: 641 YAKCSESWEAEKILNQLKCSQTMK-----PDVVSYNTVINGF 677
>gi|255567580|ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535953|gb|EEF37612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 509
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F D +KE P V Y +I VFG + L H+E + L N + P + +N L+
Sbjct: 208 LFLDFKKEANIGPSVVTYNILISVFGRSMLVDHMEATFRELMNLN-ISPNVSTYNNLIAG 266
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEAMEEV 244
V + D + ++LMK P +Y ++ G +E MEE+
Sbjct: 267 YVTAWMWDDMEQVFQLMKEGPIYPHLDTYLLMLRGYAHSGNIEKMEEM 314
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE++ KP V Y +I G NG IL+ ++ E +P++ ++ L
Sbjct: 482 ASGLFEEMEASSC-KPDVITYNTLINCLGKNGDLDEAHILFKEMQ-EKGYDPDVFTYSTL 539
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C D+ ++ M GC P+ +Y +++ LE
Sbjct: 540 IECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLE 579
>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
Length = 413
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
++ N LAL + + Q K +Y ++ V T G + V + +F E+ +
Sbjct: 143 FVQTNQADLALDAYARM-NSQGLKATDGIYRGLVCVCATQGRWL-VALTFFKEMLESGCK 200
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
P I +N L++ L ++V+D MK G PD + V+NGL A E
Sbjct: 201 PTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAARE 253
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FE++ KP + Y +I G NG I + ++ E L P++ ++ L
Sbjct: 338 AIKIFEELENSDC-KPDIISYNSLINCLGKNGDLDEAHIRFREMQ-EKGLNPDVVTYSTL 395
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C ++ ++ M GC P+ +Y +++ LE
Sbjct: 396 IECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLE 435
>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 496
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 63 TRSMLVIEMRDRGQNRKPLQRGRNLSIEA----IQAVQHLKRAHLHSNPLDHV---FNSK 115
T +M+V + RG+ + + ++S+ + + R H+ D + +
Sbjct: 170 TYNMMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQ 229
Query: 116 FRRLLKFDMIA--VLRELLRQNHC--LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG 171
RR +I +L EL+ + HC + A++V ED+ E Y P + Y ++ G
Sbjct: 230 LRRGCPPYLITYTILIELVCK-HCGTVRAMEVLEDMAIEGCY-PDLVTYNSLVNFTCKQG 287
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
++ ++ + + + +EP +N LL L L D V + +MK P +Y
Sbjct: 288 KYEDAALIIINMLS-HGMEPNAITYNTLLHSLCSCGLWDEVDEILTVMKETSHPPTVVTY 346
Query: 232 RTVINGL 238
T+INGL
Sbjct: 347 NTLINGL 353
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDI--RKEQWYKPQVSLYADMIQVFGTNGLFQH 175
RL A++ L R+ A ++F+++ R++ +KP V Y +I F +G +
Sbjct: 148 RLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEK 207
Query: 176 VEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ ++ + P + +++LL L D +D + M + GC P+ +Y T+I
Sbjct: 208 AMKMLGVMEGRKCV-PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLI 266
Query: 236 NGLEAMEEV 244
+GL A +V
Sbjct: 267 HGLCAAHKV 275
>gi|312087055|ref|XP_003145319.1| hypothetical protein LOAG_09745 [Loa loa]
gi|307759517|gb|EFO18751.1| hypothetical protein LOAG_09745 [Loa loa]
Length = 669
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
AL++++++R E+ + P V Y +I + T +Q FYLK + S++P I+ FN
Sbjct: 254 ALELYKEMR-EKSFVPTVEAYYGLITIAKT---WQEA---IFYLKDMAQKSIKPNIRIFN 306
Query: 198 ALLKCLVGFKLRDLVVDCYELMK---TVGCEPDRSSY 231
AL++ + +LRD +++ TVGC+P +Y
Sbjct: 307 ALIEKSISVQLRDQFNTAIKILNEATTVGCKPSLRTY 343
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVF------NSKFRRLLKFDMIAVLRELLRQNHCLLALK 142
+ +++V + RA + LD ++ ++ K ++ +L + +K
Sbjct: 814 LPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMK 873
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
++ + K Y P + LY MI + N F+ VE++ ++ +P++ N LL
Sbjct: 874 IYNGM-KAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAG-FKPDLVVLNTLLLM 931
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
G D ++ Y + G EPD +Y T+I
Sbjct: 932 YTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLI 964
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFE++ + +P + Y M+ V G G Q E+++ L E +P+ +N+L
Sbjct: 312 AVAVFEEMIASEC-RPDLWTYNAMVSVHGRCGKAQEAELMFKEL-VEKGFQPDAVTYNSL 369
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GF+ DL + Y+ M+ +GC
Sbjct: 370 LYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGC 429
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +++ L M+ ++ +G + ++
Sbjct: 430 TPDAVTYTVLVDSLGKMDRISEAGKVLEE 458
>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 531
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V +Y MI + + + E ++ ++ + L P+ FN L+ + + R
Sbjct: 421 KPTVEIYNMMISGYASAKMRSQAERMFQTMQ-DCGLRPDAVTFNTLISMYIKSRKRKQAE 479
Query: 214 DCYELMKTVGCEPDRSSYRTVI 235
DCY M+ +GC+P+ +Y+ ++
Sbjct: 480 DCYIRMQQLGCKPNAVTYKILL 501
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
F A+L L A+ VF ++ + P +YA M+ G + E L
Sbjct: 143 FTYTALLHGLCGAGMVREAMSVFAGMQADGC-APDPHVYATMVHGLCGAGRTREAETLLS 201
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
E EP + +NAL+ +L VD +E M GC P+ +Y +I+G
Sbjct: 202 DAMAEG-FEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISG 256
>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
H LK F I K+ Y+ Y I++ G F+H+ L+F ++ NS +
Sbjct: 660 HGSSVLKFFSWIGKQTGYRHTAESYNIAIKIAGCGKDFKHMRSLFFEMR-RNSYPITSET 718
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+ ++ L ++ ++C++ MK P RS+Y+ +I L G DA
Sbjct: 719 WTIMIMVYGRTGLTEMAMNCFKEMKADDYVPSRSTYKYLIIAL-----CGRKGRKVDDAL 773
Query: 256 KYYGDL 261
K YG++
Sbjct: 774 KIYGEM 779
>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
Length = 413
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
++ N LAL + + Q K +Y ++ V T G + V + +F E+ +
Sbjct: 143 FVQTNQADLALDAYARM-NSQGLKATDGIYRGLVCVCATQGRWL-VALTFFKEMLESGCK 200
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
P I +N L++ L ++V+D MK G PD + V+NGL A E
Sbjct: 201 PTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAARE 253
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 18/122 (14%)
Query: 127 VLRELLRQNHCLLALKVFE---DIRKEQWYKPQVSLYADMIQVFGTNGLFQHV-EILYFY 182
+LR L+ NH L+ E D ++ YKP + + M+ +F N +F E+L+F
Sbjct: 603 LLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFI 662
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY---ELMKTV---GCEPDRSSYRTVIN 236
E L+P + +N CL+ +R+ +C+ E++K + G EPD SY TVI
Sbjct: 663 --HECGLQPNLFTYN----CLMDLYVRE--GECWKAEEVLKGIQNSGPEPDVVSYNTVIK 714
Query: 237 GL 238
G
Sbjct: 715 GF 716
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D + P V Y M+ + T G + L F L + + P+I FN L+K
Sbjct: 348 DTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDIYTFNVLIKAYAN 406
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAMEEVAFSGIIRQ----DA 254
+ D + + M+ G +PD +YRTVI L +AME+ F+ +I Q D
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK--FNQMIDQGVAPDK 464
Query: 255 FKYY 258
+ Y+
Sbjct: 465 YAYH 468
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A++VFE++ KP + Y +I G NG + + ++ + L P++ ++ L
Sbjct: 535 AVEVFEELESSDC-KPDIISYNSLINCLGKNGDVDEAHMRFLEMQ-DKGLNPDVVTYSTL 592
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
++C ++ ++ M T GC P+ +Y +++ LE A
Sbjct: 593 IECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTA 638
>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 136 HC--LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
HC + AL+V ED+ E Y P + Y ++ G ++ ++ + + + + +EP
Sbjct: 175 HCGTVRALEVLEDMAIEGCY-PDLVTYNSLVNFASKEGKYEDAALIIYNILS-HGMEPNA 232
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+N+LL L L D V + +MK P +Y +INGL
Sbjct: 233 ITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGL 277
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
I K+ + P V Y +I GL + + + +EN P+I +N LL L
Sbjct: 257 IMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENC-SPDIITYNTLLTALCKE 315
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + + L+ C P +Y TVI+GL
Sbjct: 316 GMVDEALQVFVLLSDSNCSPGLITYNTVIDGL 347
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+++ KE KP Y+ +I F G + + F T + P++ FNAL
Sbjct: 442 ALKLFQEM-KEANVKPNNYCYSSLISAFCRAGYVERA-LAIFEEMTHERIVPDVFAFNAL 499
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI-------NGLEAMEEVA 245
+ + D + Y+ M+ + +PDR ++ +I N + A+E +
Sbjct: 500 IDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMG 552
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A++VFE++ KP + Y +I G NG + + ++ + L P++ ++ L
Sbjct: 530 AVEVFEELESSDC-KPDIISYNSLINCLGKNGDVDEAHMRFLEMQ-DKGLNPDVVTYSTL 587
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
++C ++ ++ M T GC P+ +Y +++ LE A
Sbjct: 588 IECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTA 633
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 91 AIQAVQHLKRAHLHSNPLDHVFNSKFRRL-----LKFDMIA---VLRELLRQNHCLLALK 142
+++ L A+++S LD F+ L + D++ +++ L R L
Sbjct: 159 TVKSFNALLSAYVNSRKLDEA-KKAFKELPEKLGITPDLVTYNTMIKALCRTGSMDDILS 217
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+FE++ K ++P + + +++ F LF + ++ +K++N L P I+ +N+ ++
Sbjct: 218 IFEELEK-NGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKN-LAPNIRSYNSRVRG 275
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN---GLEAMEEV 244
L K +D +MKT G PD +Y I G +EEV
Sbjct: 276 LTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRGDNNLEEV 320
>gi|224131534|ref|XP_002321108.1| predicted protein [Populus trichocarpa]
gi|222861881|gb|EEE99423.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDC 215
+ +Y +I + NG F + Y E +L PE ++ L++ +++ D + C
Sbjct: 94 SLEVYNSIIHGYARNGKFDDA-LFYLNQMNEMNLSPESDTYDGLIEAYGTYRMYDEMAMC 152
Query: 216 YELMKTVGCEPDRSSYRTVI 235
+ M+ GC PDR +Y +I
Sbjct: 153 LKKMELDGCSPDRYTYNLLI 172
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ E++R ++ P + Y+ ++ NG + L+ + + + + P+ +N L
Sbjct: 252 AFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVL 311
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEVAFSGI 249
+ D + + MK+ GC P+ +Y +++GL + E+ SG
Sbjct: 312 INGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSG- 370
Query: 250 IRQDAFKYYGDLEFL 264
++ DA Y + FL
Sbjct: 371 LKPDAVTYTSLINFL 385
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVF------NSKFRRLLKFDMIAVLRELLRQNHCLLALK 142
+ +++V + RA + LD ++ ++ K ++ +L + +K
Sbjct: 654 LPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMK 713
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
++ + K Y P + LY MI + N F+ VE++ ++ +P++ N LL
Sbjct: 714 IYNGM-KAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAG-FKPDLVVLNTLLLM 771
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
G D ++ Y + G EPD +Y T+I
Sbjct: 772 YTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLI 804
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFE++ + +P + Y M+ V G G Q E+++ L E +P+ +N+L
Sbjct: 152 AVAVFEEMIASEC-RPDLWTYNAMVSVHGRCGKAQEAELMFKEL-VEKGFQPDAVTYNSL 209
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GF+ DL + Y+ M+ +GC
Sbjct: 210 LYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGC 269
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +++ L M+ ++ +G + ++
Sbjct: 270 TPDAVTYTVLVDSLGKMDRISEAGKVLEE 298
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++L L + C A + F D + KP+VS Y +I + T G + + L
Sbjct: 309 SLLNYLCKNGRCREA-RFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHS-FLDLMV 366
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM---- 241
EN L P+ FN + D +D + M+ G P+ +Y +I+ L +
Sbjct: 367 ENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVD 426
Query: 242 -EEVAFSGIIRQ 252
EV F+ +I +
Sbjct: 427 DAEVKFNQMINE 438
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++FE++ ++ KP V Y MI G NG +L+ ++ E +P++ ++ L
Sbjct: 479 ASELFEEM-EDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQ-EKGYDPDVFTYSIL 536
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C D+ ++ M GC P+ +Y +++ LE
Sbjct: 537 IECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLE 576
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNA 198
AL++ + + + Y P V ++ I G L Q E+L L+ L P+ +N
Sbjct: 590 ALEILQLLLSKGSY-PDVVTFSIFIDWLSKRGRLRQAGELLETMLRA--GLVPDTVTYNT 646
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LLK + VD +E+M+ GCEPD ++Y T++ L
Sbjct: 647 LLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + + V +Y+ +I FG G ++ L + L P + +N+L
Sbjct: 641 AYMLFEEA-KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL-MQKGLTPNVYTWNSL 698
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + + C++ MK + C P++ +Y +INGL
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGL 737
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F ++ P + +NA
Sbjct: 459 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INLFDEMSKLGCTPNVYAYNA 516
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAMEEVAF--SGI 249
L+ L + D + M+ GC PD +SY ++NGL AME + +
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST 576
Query: 250 IRQDAFKY 257
I+ DA Y
Sbjct: 577 IKPDAVSY 584
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++ KE + +YA MI+ FG G L+ +K + P++ +NAL
Sbjct: 460 ANELFQEL-KENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMK-KLGCSPDVYTYNAL 517
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ ++ + D M+ GC PD S+ ++NGL
Sbjct: 518 MSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGL 556
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 111 VFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
VF + LK D++ +++ + A+ + ++++K++ ++P + +I F
Sbjct: 505 VFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKR-HRPTSRTFMPIIHGF 563
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
G + ++ ++ + P + FNAL+ LV + + V+ + M G PD
Sbjct: 564 ARAGEMRRALEIFDMMRRSGCI-PTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPD 622
Query: 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL--EFLEED 267
+Y T++NG A+ + AF+Y+ L E LE D
Sbjct: 623 EHTYTTIMNGYAALGDTG-------KAFEYFTKLRNEGLELD 657
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FE++ +P V Y +I G NG + + ++ E L P++ ++ L
Sbjct: 484 AVKIFEELENSNC-QPDVISYNSLINCLGKNGDVDEAHMRFKEMQ-EKGLNPDVVTYSTL 541
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C ++ ++ M GC P+ +Y +++ LE
Sbjct: 542 IECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLE 581
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVFED+++ +P Y MI++ G G + F E + +N +
Sbjct: 242 AYKVFEDMKRRHC-EPDTFTYTIMIRMTGKAGKTDE-SLALFQAMLEKGFTLNLIAYNTM 299
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
++ L ++ D V + M GC+P+ +Y ++N L A
Sbjct: 300 IEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVA 340
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++R+ Y +YA MI+ G G L+ +K + P++ +NAL
Sbjct: 460 ANELFQELRENCGYS-SARVYAVMIKHLGKCGRLSEAVDLFNEMK-KLGCNPDVYAYNAL 517
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +V + D M+ GC PD +S+ ++NG
Sbjct: 518 MSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGF 556
>gi|359475966|ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g63330-like [Vitis vinifera]
Length = 563
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
F A+L ++ N +LA VF+ I KE KP VS Y +I+ + G+ ++ + ++
Sbjct: 218 FSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFD 277
Query: 182 YLKTE------------------NSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKT 221
+ + N L+ + ++LK C+VG KL D E M
Sbjct: 278 EMGCKPNLGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVG-KLDDAARHLKE-MVG 335
Query: 222 VGCEPDRSSYRTVIN 236
+G E D +Y V+N
Sbjct: 336 LGMEADAKAYGVVVN 350
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +V +++R ++ P V Y+ ++ NG + L+ + +++ + P+ +N L
Sbjct: 292 AFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVL 351
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEVAFSGI 249
+ D + E MK GC P+ +Y +++GL + E+ SG
Sbjct: 352 INGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSG- 410
Query: 250 IRQDAFKYYGDLEFLEED 267
++ DA Y + F +
Sbjct: 411 LKPDAITYTSLINFFSRN 428
>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 712
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
R K Q + +I+ +G GLFQ L+ +K + + P + FN+LL L+
Sbjct: 132 RSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMK-KMGISPSVLTFNSLLSILLKRG 190
Query: 208 LRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL--EAMEEVAFS 247
+ D + E+ +T G PD ++ T+I+G +M + AF+
Sbjct: 191 RTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFT 233
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++R+ Y +YA MI+ G G L+ +K + P++ +NAL
Sbjct: 460 ANELFQELRENCGYS-SARVYAVMIKHLGKCGRLSEAVDLFNEMK-KLGCNPDVYAYNAL 517
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +V + D M+ GC PD +S+ ++NG
Sbjct: 518 MSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGF 556
>gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa]
gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK----TENSLEPEIQGFNA 198
VF +R + ++ Y I FG G L+ +K SL+P++ +N+
Sbjct: 66 VFAKLRGKGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNS 125
Query: 199 LLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ CL G K++D V+ YE +K G EPD +YR +I G
Sbjct: 126 LIHVLCLAG-KVKDAVI-VYEELKVSGHEPDAFTYRILIQG 164
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G I F ++ P + +NA
Sbjct: 459 LACELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDA-INLFDEMSKLGCTPNVYAYNA 516
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAMEEVAF--SGI 249
L+ L + D + M+ GC PD +SY ++NGL AME + +
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNST 576
Query: 250 IRQDAFKY 257
I+ DA Y
Sbjct: 577 IKPDAVSY 584
>gi|303289811|ref|XP_003064193.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454509|gb|EEH51815.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 401
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%)
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
++P V Y +++ F G L ++ + ++ P+ +N L+ LV
Sbjct: 295 GHRPDVVTYTTLLKHFSRAGDANAARWLAREMEADVAVAPDASAYNCLIDALVKAGEVAE 354
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGL 238
C M+ GC PDR +Y +++G
Sbjct: 355 AASCVRRMRGRGCAPDRRTYGALLDGF 381
>gi|393246649|gb|EJD54158.1| hypothetical protein AURDEDRAFT_80938 [Auricularia delicata
TFB-10046 SS5]
Length = 1149
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++ +L + AL +F+ + K Q +P + MI G E L+ + +
Sbjct: 783 IISKLAKARKVDHALALFQKM-KAQGIRPSSVTFGAMISACARVGDAISAEHLFTEMASM 841
Query: 187 NSLEPEIQGFNALLKCLVGFKL-RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
N+ +P I FN L++ K R V+ YE M + G P+ +Y+ +++ +E V
Sbjct: 842 NNYKPRIPPFNTLMQLYTYTKPDRSRVLWYYEQMVSAGISPNGHTYKLLMDAYGMIEPVD 901
Query: 246 FSGI 249
F+ +
Sbjct: 902 FAAL 905
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D++A+ +++ R +K FE + VS +I+ FG G+ + E+L+ +
Sbjct: 142 DVLALAKDVDRIRFVSSEIKKFE-------FPMTVSAANALIKSFGKLGMVE--ELLWVW 192
Query: 183 LKT-ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
K EN +EP + +N L+ LV D +E+M++ +PD +Y T+I G
Sbjct: 193 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKG 248
>gi|342319080|gb|EGU11031.1| Microtubule-associated protein, putative [Rhodotorula glutinis ATCC
204091]
Length = 1171
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 110 HVFNSKFRRLLK-FDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQ 165
HV + R LK F ++ +++ LL L A +F++++K +P + + +
Sbjct: 851 HVLDDLQRSGLKTFPVVTWDSLIDGLLSCGRRLEADALFDEMQKSG-LEPSMRTFNTFL- 908
Query: 166 VFGTNGLFQHVEILYFYLK--TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223
+ T G + + L+ E LEP++ F +L L+ +D E+M+ G
Sbjct: 909 AYSTRGKRPDLATMIRLLQQIAERGLEPDVYTFTMVLHALLAVGQKDATTRTIEMMQAAG 968
Query: 224 CEPDRSSYRTVINGLEAMEE 243
+P R++Y VI+ L + E
Sbjct: 969 IKPTRATYGAVIHNLSSSGE 988
>gi|115529193|dbj|BAF34329.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|115529195|dbj|BAF34330.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 513
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 13/186 (6%)
Query: 58 QQVTATRSMLVI--EMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSK 115
+ ++ R MLV+ + R +PL G +++ A+ V+ L+ + SN L ++
Sbjct: 70 ESMSIRRGMLVVTNASKRRRWKSEPLVNG-SVTKRALHIVKILRSS---SNLLPDEIDAT 125
Query: 116 FRRLL------KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT 169
++ + + D + VL+E + LL LK+FE + W++ V Y +I +G
Sbjct: 126 LQKWVTSMQPNRKDWLTVLKEFDNRLERLLYLKIFEWGLLQSWFEAGVRDYTKLIDKYGR 185
Query: 170 NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS 229
G E + F + E + ++ F L+ K+ + V + + G E D
Sbjct: 186 EGNVVEAEQM-FRIMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAGLELDAV 244
Query: 230 SYRTVI 235
Y+TVI
Sbjct: 245 FYKTVI 250
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHS----NPLDHVFNSKFRRLL 120
S ++ RDRG+ +K Q + + ++ +H + + + LDH ++ F ++L
Sbjct: 400 SRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDT-FDKML 458
Query: 121 K--FDMIAVLRELLRQNHCLLAL-----KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF 173
V L HC L ++FE++ E+ + P V+ + MI FG +
Sbjct: 459 SEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMM-EKGFSPCVTTFNIMINSFGEQERW 517
Query: 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
V+ L +++ L P + + L+ ++C E MK+ G +P + Y
Sbjct: 518 DDVKTLMGNMRSLGLL-PNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNA 576
Query: 234 VIN-----GLEAMEEVAFSGIIRQDAFK 256
+IN GL AF ++R D+ K
Sbjct: 577 LINAYAQKGLSEQAVNAFR-LMRADSLK 603
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ F +R + KP + +I FG + + Y+K EN L+P++ + L
Sbjct: 590 AVNAFRLMRADSL-KPSLLALNSLINAFGEDRRDAEAFSVLKYMK-ENDLKPDVVTYTTL 647
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+K L+ + V YE M GC PDR + + + L+ M++
Sbjct: 648 MKALIRVDKFNKVPSVYEEMILAGCTPDRKARAMLRSALKYMKQT 692
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+V +++K + P V Y+ +I NG + L+ + +++ + P+ ++ L
Sbjct: 218 ALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVL 277
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEVAFSGI 249
+K D E M++ GC+P+ +Y ++NG E +E+ SG
Sbjct: 278 IKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSG- 336
Query: 250 IRQDAFKY 257
++ D Y
Sbjct: 337 LKPDTVGY 344
>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 989
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE-ILYFYLKTENSLEPEIQGFNA 198
AL +F+ + K Q P Y +IQ+ L + IL L ++ +P + + A
Sbjct: 531 ALSIFKGM-KNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEML--DSGCKPGCKTYAA 587
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
L+ V L VD YE MK G +P+ Y ++ING A SG++ ++A +Y+
Sbjct: 588 LIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGF------AESGMV-EEAIQYF 640
Query: 259 GDLE 262
+E
Sbjct: 641 KLME 644
>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L + + + L A++VFE ++++ +Y+P+ + Y ++ + G G Q L+ + E
Sbjct: 57 ALTDCVLKKQWLQAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEM-VE 115
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVING 237
+EP + + ALL L D MK++ C+PD +Y T++
Sbjct: 116 EGIEPTTELYTALLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKA 167
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE KP V Y ++ G NG Q I F + P FN L CL
Sbjct: 567 KEMKLKPTVVTYNTLLAGLGKNGKIQEA-IELFEGMVQKGCPPNTITFNTLFDCLCKNDE 625
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + M +GC PD +Y T+I GL
Sbjct: 626 VTLALKMLFKMMDMGCVPDVFTYNTIIFGL 655
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D++A+ +++ R +K FE + VS +I+ FG G+ + E+L+ +
Sbjct: 160 DVLALAKDVDRIRFVSSEIKKFE-------FPMTVSAANALIKSFGKLGMVE--ELLWVW 210
Query: 183 LKT-ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
K EN +EP + +N L+ LV D +E+M++ +PD +Y T+I G
Sbjct: 211 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKG 266
>gi|357150687|ref|XP_003575543.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Brachypodium distachyon]
Length = 1109
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
AV++ R+ H ALK F + + +Y Y +++ G+ F+H+ LY +
Sbjct: 723 AVMKRCKRKGHA--ALKFFSWVSRLTYYMHTTETYNTAMKLAGSAKDFKHMRHLYREMAG 780
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
P + +N ++ L ++ +D + MK G +PD+++Y +I
Sbjct: 781 AQ-CSPTVDTWNVMICQYGNAGLSEMALDTFYQMKQQGFQPDKTTYNHLI 829
>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK----TENSLEPEIQGFNA 198
VFE +R ++ + Y I FG G L+ +K +S P++ +N+
Sbjct: 218 VFEKLRAKKDFDLDTQGYNICIHAFGCWGDLGTALNLFKEMKDKSLNSSSFGPDLCTYNS 277
Query: 199 LLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L++ CLVG K++D ++ +E +K G EPD +YR +I G
Sbjct: 278 LIRVLCLVG-KVKDALI-VWEELKGSGHEPDAFTYRILIQG 316
>gi|359496226|ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Vitis vinifera]
Length = 382
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 79 KPLQRGRNLS--IEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
K + R RNL ++ + L R + ++ RRL + E+L +
Sbjct: 31 KDIYRERNLKRLVQKFKKSSELDRFRTKTG----IYEETVRRLASAKRFRWIEEILEEQ- 85
Query: 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196
K ++DI +E + ++LY G +G+F H F + E + F
Sbjct: 86 -----KKYKDISREGFAVRLITLY-------GKSGMFDHA-FKVFDEMPDQKCERSVLSF 132
Query: 197 NALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
NALL V K D V + EL + EPD SY VINGL
Sbjct: 133 NALLGACVNSKKFDKVEGFFSELPSKLSVEPDLVSYNIVINGL 175
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 136 HCLL-------ALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
HCL+ A+++F +R+ + P V Y ++ + G ++ + ++ + E
Sbjct: 301 HCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAE- 359
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN--GLEAMEEVA 245
+ P I +NALL + ++ ++L+K G +PD SY +++N G A+ E A
Sbjct: 360 GVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKA 419
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL-YFYLKTENSLEPEIQGFNALL 200
K D+ + +P + Y ++ + ++G+ H E L F L +N +P+I + +LL
Sbjct: 350 KAVFDMMVAEGVRPNIVSYNALLGAYASHGM--HTEALETFKLLKQNGFKPDIVSYTSLL 407
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN--GLEAMEEVAFS 247
L + + + M+ C+P++ SY +I+ G M + A S
Sbjct: 408 NAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAIS 456
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++FED+++ KP +Y +I+ +G N + F L ++ ++P +N++
Sbjct: 223 AMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKA-MRIFRLMQQDGVQPNTVTYNSV 281
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ + E M + G EPD ++ T+I G
Sbjct: 282 IDACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKG 319
>gi|397642781|gb|EJK75451.1| hypothetical protein THAOC_02824 [Thalassiosira oceanica]
Length = 1088
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 140 ALKVFED-----IRKEQWYKPQVSL--YADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
A+K+F+ I KP +L Y M+ F G +QH + L+ +K + + P+
Sbjct: 621 AVKIFDSMPNPSINNPPLGKPAKNLVTYNTMLNAFANFGQYQHAQDLFDSMK-KTGVRPD 679
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
F +L+K + D +D + MK VG +PDR SY ++I
Sbjct: 680 RVTFTSLIKAFLKSGNLDKALDLLDDMKWVGIQPDRVSYNSII 722
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +V E+++K P + Y+ +I +G + L+ + +++ + P+ +NAL
Sbjct: 262 AFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNAL 321
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + E MK GC P+ +Y ++NG
Sbjct: 322 INGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 360
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 127 VLRELLRQNHCLLALKVFE---DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+LR LL N AL E + K+ YKP + ++ M+ +F N ++ E + +
Sbjct: 598 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVINGL 238
+ E+ L P++ +N+L+ V R E++KT+ +PD SY TVI G
Sbjct: 658 R-EDGLSPDLVTYNSLMDMYV---RRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGF 711
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 37/149 (24%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ VFE++ + +P + Y M+ V G G Q E+++ L E +P+ +N+L
Sbjct: 85 AVAVFEEMIASEC-RPDLWTYNAMVSVHGRCGKAQEAELMFKEL-VEKGFQPDAVTYNSL 142
Query: 200 LKCLV------------------GFKLR-----------------DLVVDCYELMKTVGC 224
L GF+ DL + Y+ M+ +GC
Sbjct: 143 LYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGC 202
Query: 225 EPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
PD +Y +++ L M+ ++ +G + ++
Sbjct: 203 TPDAVTYTVLVDSLGKMDRISEAGKVLEE 231
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE KP V Y ++ G NG Q I F + P FN L CL
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEA-IELFEGMVQKGCPPNTITFNTLFDCLCKNDE 623
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + M +GC PD +Y T+I GL
Sbjct: 624 VTLALKMLFKMMDMGCVPDVFTYNTIIFGL 653
>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Glycine max]
Length = 733
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
V+ L+R H LAL V++D++++ + V+ M+ V G + E+L +
Sbjct: 241 VMDALVRTGHLDLALSVYDDLKEDGLVEESVTF---MVLVKGLCKCGRIDEMLEVLGRMR 297
Query: 187 NSL-EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L +P++ + AL+K LV D + +E MK EPD +Y T+I GL
Sbjct: 298 ERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGL 350
>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
Length = 455
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF-QHVEILYFYLK 184
V+ L R+ + A ++ ++ K + P Y+ +I+ G+ + +EI F L
Sbjct: 304 GVITSLCRKGNTYPAFQLLYEMTK-FGFVPDPYTYSSLIRGLCIEGMLDEALEI--FRLL 360
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
EN P + FNAL+ DL +D E+M G P+ ++Y ++ G+ EE
Sbjct: 361 EENDYRPILDNFNALILGFCKSGRTDLSLDILEMMVEKGYTPNETTYTIIVEGIAHEEE 419
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 140 ALKVFEDIR-KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
A+ +F+ +R K P V + +I ++ NG ++ ++ + E L+P I +N
Sbjct: 294 AIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAE-GLKPNIVSYNT 352
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L+ + + + +K G PD SY +++N
Sbjct: 353 LMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLN 390
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P H ++ L K I LLR+ +++ + P V Y ++
Sbjct: 344 PDAHTYSILMHGLCKLGRIGSAVRLLRE-------------MEKKGFAPNVVTYTIVLHS 390
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP 226
F NG++ L + + L QG+N ++ L D + + M++ GC P
Sbjct: 391 FCKNGMWDDTRALLEEMSAKG-LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449
Query: 227 DRSSYRTVINGL---EAMEEV 244
D SY T+I L E MEE
Sbjct: 450 DICSYNTIIYHLCNNEQMEEA 470
>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 881
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+Q C + V + I + + +P + + +I FG G + +Y ++K E+ + P+
Sbjct: 411 QQGLCEQVIMVLQ-IMEAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHIK-ESGVSPD 468
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
+ + L+K + K D V Y+ M+ GC PDR +
Sbjct: 469 VVTYTTLMKAFIRAKKFDEVPIIYKEMENDGCTPDRKA 506
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D K+ P V Y ++ G G Q I F E P FN LL C
Sbjct: 566 DRMKDMKLSPTVVTYNTLLSGLGKEGRVQKA-IELFESMIEKKCSPNTISFNTLLDCFCK 624
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L + + M + C+PD +Y TVI GL
Sbjct: 625 NDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++FE++ + KP +++ +I +G G + L+ + E + P+++ + L
Sbjct: 912 AMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE-GIRPDLKSYTIL 969
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL---EAMEE 243
+ CL D + + +K+ G +PD +Y +INGL + MEE
Sbjct: 970 VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEE 1016
>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 589
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
++ K+F ++R Q KP + Y ++ F GL + E ++ L+ + ++
Sbjct: 292 MSWKLFCEMRSHQC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSR------ 344
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIR 251
G+ + + LM+ +GCEPDR+SY +++ GL + E F + R
Sbjct: 345 -----AGYPYG--AAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR 395
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216
+S Y +I ++G G + +E L+ LK E + +P++ + + + KL ++ +
Sbjct: 472 ISTYNILINIYGKAGFLERIEELFVELK-ERNFKPDVVTWTSRIGAYSRKKLYVKCLEIF 530
Query: 217 ELMKTVGCEPDRSSYRTVINGLEAMEEV 244
E M GC PD + + +++ + ++V
Sbjct: 531 EEMIDSGCAPDGGTAKVLLSACSSEDQV 558
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 92 IQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ 151
IQ VQ ++ + S+P + N+ ++ L + + N A KVF ++R
Sbjct: 268 IQLVQEMRDSG--SSPNAVIMNT---------LMGTLSKAGKVNQ---AKKVFNEMRTSG 313
Query: 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
V+L + +++++ G + +Y LKTE + ++ +N+L+K V +
Sbjct: 314 VSPTPVTL-SILVEMYTRVGAYDQAFEVYETLKTE-GWKCDVAVYNSLMKACVEGGRVEQ 371
Query: 212 VVDCYELMKTVGCEPDRSSYRTVIN 236
D + MK GC PD +YRT +N
Sbjct: 372 AEDILKEMKRAGCNPDHLTYRTAMN 396
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + + V +Y+ +I FG G ++ L + L P + +N+L
Sbjct: 641 AYMLFEEA-KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL-MQKGLTPNLYTWNSL 698
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + + C++ MK + C P++ +Y +INGL
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGL 737
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 109/286 (38%), Gaps = 61/286 (21%)
Query: 39 AKSASWSDVKV--KPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQ 96
A + W ++ K + + + S ++ RD+G+ +K Q +++ +Q +
Sbjct: 373 AHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDR 432
Query: 97 HLKRAHLHS----NPLDHVFNSKFRRLL----------------------KFDMIAVLRE 130
H + + N LDH + F R+L + +M L
Sbjct: 433 HFYNVMIDTFGKYNCLDHAM-ATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFG 491
Query: 131 LLRQ---NHCLLALKVFEDIRKEQWYKPQVSL----------------YADMIQVFGTNG 171
++Q + C+ + + EQ QVSL Y ++ V+G +G
Sbjct: 492 EMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSG 551
Query: 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231
F LK+ +P +NAL+ L +L V+ + LM T G P +
Sbjct: 552 RFSDAIECLEVLKS-TGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLAL 610
Query: 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED--EEDIAAYC 275
++IN G R+DA + + L++++E+ E D+ Y
Sbjct: 611 NSLINAF---------GEDRRDA-EAFAVLQYMKENNIEPDVVTYT 646
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA+ F + E P + +I FG + + Y+K EN++EP++ +
Sbjct: 590 LAVNAFRLMTTEGL-TPSLLALNSLINAFGEDRRDAEAFAVLQYMK-ENNIEPDVVTYTT 647
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L+K L+ + V YE M T GC PDR + + + L M++
Sbjct: 648 LMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSALRYMKQT 693
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
++KVF I K P V + ++ + G + +Y + + + P+ FN L
Sbjct: 168 SIKVF-TIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNIL 226
Query: 200 LKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ GF + +V D + + + GCEPD +Y T+++GL
Sbjct: 227 IR---GFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGL 265
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P H ++ L K I LLR+ +++ + P V Y ++
Sbjct: 328 PDAHTYSILMHGLCKLGRIGSAVRLLRE-------------MEKKGFAPNVVTYTIVLHS 374
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP 226
F NG++ L + + L QG+N ++ L D + + M++ GC P
Sbjct: 375 FCKNGMWDDTRALLEEMSAKG-LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 433
Query: 227 DRSSYRTVINGL---EAMEEV 244
D SY T+I L E MEE
Sbjct: 434 DICSYNTIIYHLCNNEQMEEA 454
>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 549
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 92 IQAVQHLKRAHLHSNPLDHVFNS--KFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
I+A+ L A + ++H +++ +F+ + D + +L +C + +D RK
Sbjct: 235 IEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSF--NILLHGYC--KARKLDDARK 290
Query: 150 ------EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203
+Q ++P V Y I+++ F++VE ++ ++ E S +P + + + L
Sbjct: 291 IMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQ-EKSCKPNVITYTIFMHAL 349
Query: 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
K + ++ YE+MK+ C PD S Y ++I
Sbjct: 350 GKAKQVNKALEVYEMMKSNCCVPDASFYSSLI 381
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L +Q + A ++F ++ + KP + +Y +I +G H L+ L
Sbjct: 447 LLEGFCKQGYLGKAFRLFRAMQG-TYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFV- 504
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L+P++Q + ++ L L D ++ + M+ GC P+ SY +I G
Sbjct: 505 HGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGF 556
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 172 LFQHVEILYFYLK--TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS 229
L QHV++ + L + L+P I F L+ L ++ ++ M GC+PD
Sbjct: 138 LMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVY 197
Query: 230 SYRTVINGLEAM-EEVAFSGIIRQ 252
+Y T+INGL M E A +G+I++
Sbjct: 198 TYTTIINGLCKMGETAAAAGLIKK 221
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P + ++ +I +F G + + + TE +EP + +N+L+ G+ L+ VV+
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTM-TEMGVEPNVITYNSLMH---GYSLQMEVVE 354
Query: 215 C---YELMKTVGCEPDRSSYRTVING 237
+++M T GC+PD SY +ING
Sbjct: 355 ARKLFDVMITRGCKPDVFSYSILING 380
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FE++ KP + + +I G NG + + ++ E L P++ ++ L
Sbjct: 491 AVKIFEELENSSC-KPDIISFNSLINCLGKNGDIDEAHMRFKEMR-EEGLSPDVVTYSTL 548
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C ++ ++ M GC P+ +Y +++ LE
Sbjct: 549 IECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 588
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFE+I+ + P + + ++ VFG NG+ V ++ +K PE FN L+
Sbjct: 451 MKVFEEIKICECV-PDIVTWNTLLAVFGQNGMDSEVSGVFKEMK-RAGFVPERDTFNTLI 508
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y M G PD S+Y V+ L
Sbjct: 509 SAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAAL 546
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A++ ++ +C LAL + +R++ P V Y +I V+G GL++ + +KT
Sbjct: 250 ALMNVCIKCGNCPLALDTYNHMRQDG-ACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKT 308
Query: 186 ENSLEPEIQGFNAL-LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
E +EP ++ +N L + C + + R+ + Y+ M G P+ ++Y +I+
Sbjct: 309 EG-VEPVLRTYNTLIIACNMCGQPREAMA-VYKRMLDEGYSPNATTYNALIS 358
>gi|224100125|ref|XP_002334407.1| predicted protein [Populus trichocarpa]
gi|222872045|gb|EEF09176.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK----TENSLEPEIQGFNA 198
VF +R + ++ Y I FG G L+ +K SL+P++ +N+
Sbjct: 202 VFAKLRGKVGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASGSLDPDLCTYNS 261
Query: 199 LLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ CL G K++D V+ YE +K G EPD +YR +I G
Sbjct: 262 LIHVLCLAG-KVKDAVI-VYEELKVSGHEPDAFTYRILIQG 300
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS--LEPEIQGFN 197
A+ F + + K V + ++ V G F + Y ++ NS +P + +N
Sbjct: 143 AVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYN 202
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++K L D VD + M C PD +Y T++NGL
Sbjct: 203 LIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGL 243
>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 610
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 124 MIAVLRELLRQNHCL-LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
+IA+L +L R + L L ++ +Q Y P V + ++ G G + YF+
Sbjct: 89 LIALLGKLQRTDAALDLVTRM-----TQQGYVPDVFVLTALVSALGRAGEVGKAQ--YFF 141
Query: 183 LKTEN-SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ + + P + +N+++ D V D E+MK G EPD +Y +IN
Sbjct: 142 NEIQRLGMTPTLHSYNSMIMAFARAGRIDKVRDMLEVMKHKGIEPDVRTYTEIIN 196
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF ++R V+L + +++++ G + +Y LKTE + ++ +N+L
Sbjct: 302 AKKVFNEMRTSGVSPTPVTL-SILVEMYTRVGAYDQAFEVYETLKTE-GWKCDVAVYNSL 359
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+K V + D + MK GC PD +YRT +N
Sbjct: 360 MKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMN 396
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FE++ KP + + +I G NG + + ++ E L P++ ++ L
Sbjct: 555 AVKIFEELENSSC-KPDIISFNSLINCLGKNGDIDEAHMRFKEMR-EEGLSPDVVTYSTL 612
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C ++ ++ M GC P+ +Y +++ LE
Sbjct: 613 IECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 652
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFE+I+ + P + + ++ VFG NG+ V ++ +K PE FN L+
Sbjct: 451 MKVFEEIKICECV-PDIVTWNTLLAVFGQNGMDSEVSGVFKEMK-RAGFVPERDTFNTLI 508
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y M G PD S+Y V+ L
Sbjct: 509 SAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAAL 546
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 122 FDMIAVLRELLRQNHCLLALK----VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
F +LR L+ N A++ FE++ K YKP + ++ M+ +F N +++ +
Sbjct: 615 FPSWVLLRTLILANFKCRAVRGMERAFEELMK-NGYKPDMVIFNSMLSIFAKNNMYERAQ 673
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTV 234
+ ++ E+ L+P++ +N+L+ + R E++K + G PD SY T+
Sbjct: 674 KMLDLIR-ESGLQPDLVTYNSLMNM---YARRGECWKAEEILKGLIKSGESPDLVSYNTI 729
Query: 235 INGL 238
I G
Sbjct: 730 IKGF 733
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|255089953|ref|XP_002506898.1| predicted protein [Micromonas sp. RCC299]
gi|226522171|gb|ACO68156.1| predicted protein [Micromonas sp. RCC299]
Length = 634
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 120 LKFDM-IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
+K DM A L R LL L V D+ K + KP++ T LF+ E+
Sbjct: 79 IKEDMERAGLTTTPRTYAVLLNLLVNTDVGKRRGPKPRL---------IRTCKLFE--EM 127
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L N++ P FN+L+ K DLV ++ M G P R +Y T + +
Sbjct: 128 L------ANNVAPPPAAFNSLIVAAKRAKQPDLVARSFQEMVNAGVRPSRETYETTLAAV 181
Query: 239 EA--MEEVAFS--GIIRQDAFK 256
A M +VA G +R+D FK
Sbjct: 182 SAGGMADVALEVFGRMRRDGFK 203
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
++KVF I K P V + ++ + G + +Y + + + P+ FN L
Sbjct: 168 SIKVF-TIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNIL 226
Query: 200 LKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
++ GF + +V D + + + GCEPD +Y T+++GL
Sbjct: 227 IR---GFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGL 265
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS--LEPEIQGFN 197
A+ F + + K V + ++ V G F + Y ++ NS +P + +N
Sbjct: 119 AVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYN 178
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++K L D VD + M C PD +Y T++NGL
Sbjct: 179 LIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGL 219
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P H ++ L K I+ LLR+ +++ + P V Y ++
Sbjct: 344 PDAHTYSILMHGLCKLGRISSAVRLLRE-------------MEKKGFAPNVVTYTIVLHS 390
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP 226
F NG++ L + + L QG+N ++ L D + + M++ GC P
Sbjct: 391 FCKNGMWDDTRALLEEMSAK-GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449
Query: 227 DRSSYRTVINGL---EAMEEV 244
D SY T+I L E MEE
Sbjct: 450 DICSYNTIIYHLCNNEQMEEA 470
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q + L AL++F ++KE +K + Y MI+ G +G F+ +E E E +
Sbjct: 17 QKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAME--------EVLAETRM 68
Query: 194 QGFNALLKCLVGFKLRDL--------VVDCYELMKTVGCEPDRSSYRTVIN 236
N LL+ + +R+ VD +E M CEP SY ++N
Sbjct: 69 NIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMN 119
>gi|3695380|gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
Length = 508
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL-----EPEIQGF 196
+VFE ++ + +K Y I FG G L+ +K +S+ P+I +
Sbjct: 233 RVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTY 292
Query: 197 NALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254
N+L+ CL G K +D ++ ++ +K G EPD S+YR +I G + DA
Sbjct: 293 NSLIHVLCLFG-KAKDALI-VWDELKVSGHEPDNSTYRILIQGCCKSYRM-------DDA 343
Query: 255 FKYYGDLEF 263
+ YG++++
Sbjct: 344 MRIYGEMQY 352
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A VF ++ E+ +KP + Y ++ F+ + L + +N ++P+ NA+
Sbjct: 79 AQAVFHNL-TEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKV-ADNGMKPDSILLNAM 136
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + ++ MK GC+P S+Y T+I G
Sbjct: 137 INAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGF 175
>gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+Q C +KV + + E +P + + +I FG G + +Y ++K E+ + P+
Sbjct: 348 QQGLCEQTVKVLQLMEAEG-IEPNLIMLNVLINAFGIAGRHREALSIYHHMK-ESGISPD 405
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
+ ++ L+K + + D V + Y M++ GC PD+ +
Sbjct: 406 VVTYSTLMKAYIRARKFDEVPEIYSEMESSGCTPDKKA 443
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
DI K YK ++YA ++ ++G G FQ E LK+E L P F L
Sbjct: 290 DIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSEGIL-PSASMFCVLANAYAQ 348
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + V +LM+ G EP+ +IN
Sbjct: 349 QGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAF 381
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++L L + A +F + E+ + P V Y+ +I F E LY +
Sbjct: 451 SLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMID 510
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDC---YELMKTVGCEPDRSSYRTVINGL 238
N + P + +NA L G + + D YE M GC PD +Y T+I+G
Sbjct: 511 LNCV-PNVTTYNAFLN---GLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGF 562
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 7/157 (4%)
Query: 86 NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF----DMIAVLRELLRQNHCLLAL 141
N SI+A QA Q LKR H+ L + +RL +F + LL + A+
Sbjct: 341 NCSIDAYQANQILKRVDDHAVALGFFY--WLKRLPRFRHDGHTYTTMIGLLGRAKQFAAI 398
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
D + +P V Y +I +G Q + F E EP+ + L+
Sbjct: 399 NKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDA-VNVFKQMQEAGCEPDRVTYCTLID 457
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D+ + YE M+ G PD +Y +IN L
Sbjct: 458 IHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 7/157 (4%)
Query: 86 NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF----DMIAVLRELLRQNHCLLAL 141
N SI+A QA Q LKR H+ L + +RL +F + LL + A+
Sbjct: 341 NCSIDAYQANQILKRVDDHAVALGFFY--WLKRLPRFRHDGHTYTTMIGLLGRAKQFAAI 398
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
D + +P V Y +I +G Q + F E EP+ + L+
Sbjct: 399 NKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDA-VNVFKQMQEAGCEPDRVTYCTLID 457
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D+ + YE M+ G PD +Y +IN L
Sbjct: 458 IHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V +Y+ +I FG G+ L+ ++ P I +N LL L ++
Sbjct: 841 PNVGVYSSLIDSFGKKGMVDRALELFEEMQ-RRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899
Query: 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
E M+ VGC PD +Y +I+G+ M V
Sbjct: 900 LLEEMEKVGCVPDLVTYNILIDGVGKMGMV 929
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT-ENSLEPEIQGFNALLK 201
+ +IRK + + VS +I+ FG G+ + E+L+ + K EN +EP + +N L+
Sbjct: 174 ICSEIRKFE-FPMTVSPGNSLIKSFGKLGMVE--ELLWVWRKMKENGIEPTLYTYNFLMN 230
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
LV D +E+M++ +PD +Y T+I G
Sbjct: 231 GLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKG 266
>gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa]
gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa]
Length = 810
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +F+ +R + +V+ Y +IQ+F L L ++ E +P+ F+A+
Sbjct: 361 AFSLFKGMRNHGTWPDEVT-YNSLIQMFSGGDLMDQARDLLDEMQ-EAGFKPQCLTFSAV 418
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+ C VD Y+ M G +P+ Y ++ING + V ++A KY+
Sbjct: 419 MACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNV-------EEALKYF 470
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|359490053|ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Vitis vinifera]
gi|297745081|emb|CBI38673.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL-VGFKLRDLVVDCYEL 218
Y MI ++G G + V + LK E+ L P++ +N L+K + + D VV E
Sbjct: 802 YNIMINIYGEQGWIEEVANVLTELK-ESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKE- 859
Query: 219 MKTVGCEPDRSSYRTVINGL----EAMEEVAFSGIIRQ 252
M+ G +PDR +Y +IN L E +E V +S ++Q
Sbjct: 860 MRENGIQPDRITYINLINALRKNDEFLEAVKWSLWMKQ 897
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV 222
++ + G Q E + F ++ P I +N L+ D + +K V
Sbjct: 318 LLNAYSQQGKLQEAERVLFSMQNA-GFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNV 376
Query: 223 GCEPDRSSYRTVING 237
G EPD S+YR++I G
Sbjct: 377 GLEPDESTYRSMIEG 391
>gi|225466900|ref|XP_002264269.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Vitis vinifera]
Length = 588
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 144 FEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK-TENSLEPEIQGFNALLKC 202
FE +R+ KP V++Y +I G +H +++ Y K ++ ++P++ FN+L+
Sbjct: 275 FESMRRMIDGKPSVAMYNILIN--GYVNCREHEKVMTVYEKMIKDRVKPDVFTFNSLISS 332
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L ++ ++ MK GC P+ S+ T+I G
Sbjct: 333 CCRNSQFGLALEMFKEMKDKGCSPNVVSFNTLIKG 367
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++FE++ E+ P V Y ++ F G F V+ L+ + + + P I FN L
Sbjct: 176 AYRLFEEML-EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV-PNIFTFNNL 233
Query: 200 LKCLVGF-KLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
L GF K+ D+V + + L M+++GC PD SY T+I G+
Sbjct: 234 LD---GFCKMGDMV-EAHRLFLEMRSLGCPPDVVSYNTLIRGM 272
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
A +FE+ K + + V +Y+ +I FG G ++ Y L+ + L P + +N
Sbjct: 148 AYMLFEEA-KSKGIELNVIVYSSLIDGFGKVG---RIDEAYLILEEMMKKGLAPNVYTWN 203
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L+ LV + + + C++ MK + C P+ +Y +INGL
Sbjct: 204 SLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 244
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + V +Y+ +I FG G ++ L + L P +N L
Sbjct: 675 AYMLFEEA-KSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEEL-MQKGLTPNTYTWNCL 732
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + D + C++ MK + C P+ +Y ++NGL
Sbjct: 733 LDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGL 771
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 114 SKFRRLLKFDMI-------AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
S FRRL ++ A + LL+ ALKVF ++ KE+ P V Y+ +I
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL-KEKGLVPDVFTYSSLISG 657
Query: 167 FGTNGLFQHVEILYFYLKTENSLE---PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223
F G + F L E L+ P I +NAL+ L ++ M G
Sbjct: 658 FCKQGEVEKA----FELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 713
Query: 224 CEPDRSSYRTVINGLEAMEEVA 245
EPD +Y T+I+G E VA
Sbjct: 714 LEPDSVTYSTMIDGYCKSENVA 735
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 116 FRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
F R+ K D+I+ ++ L + + AL +FE + K Q KP + I + G
Sbjct: 540 FNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESM-KVQGPKP------NHITILGVLFA 592
Query: 173 FQHVEIL---YFYLKTENSL---EPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCE 225
H ++ ++Y ++ N+L +P + + +L L KL D+V +L+ + CE
Sbjct: 593 CSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMV----KLIHEMNCE 648
Query: 226 PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAAY 274
PD ++RT+++ A + V + Y E L+ D +D AY
Sbjct: 649 PDVVTWRTLLDACRARQNVDLAT---------YAAKEILKLDPQDTGAY 688
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|258577031|ref|XP_002542697.1| predicted protein [Uncinocarpus reesii 1704]
gi|237902963|gb|EEP77364.1| predicted protein [Uncinocarpus reesii 1704]
Length = 585
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI---LYFY 182
A+L E L++N + K+F D++K + KP Y+ + + + + V+I LY
Sbjct: 104 ALLSEELKKNGPEMGFKLFNDLKK-RGVKPNAHTYSMLFRELADHPSKKAVQIGMSLYDT 162
Query: 183 LKTENSLEPEIQGFNALLK-CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ ++++ P IQ NA+L+ C + L EL PD +Y T++ +
Sbjct: 163 LRRDSTVPPSIQHTNAMLQVCSNHNNMGALWEIVGELPTKGPGAPDNVTYSTILGAI 219
>gi|108710734|gb|ABF98529.1| expressed protein [Oryza sativa Japonica Group]
gi|125545490|gb|EAY91629.1| hypothetical protein OsI_13265 [Oryza sativa Indica Group]
Length = 771
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 22/151 (14%)
Query: 135 NHCLLAL---KVFEDIR------KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
N LLAL +++D R + + Y I FG L+ +KT
Sbjct: 194 NRLLLALSKENLYDDFRHVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKT 253
Query: 186 ENS-LEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------ 237
+ L P+I N+L++ LV G ++ D +V Y+ MK+ G EPD +YR +++G
Sbjct: 254 ASPPLVPDICTHNSLIRALVVGARVADALV-VYDEMKSFGIEPDVFTYRAIVDGCCKSFR 312
Query: 238 ----LEAMEEVAFSGIIRQDAFKYYGDLEFL 264
L +E+ S ++ DA Y L+ L
Sbjct: 313 MDDALRLFQEMRGSYGVKGDAVVYNSLLDGL 343
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FE++ KE+ P V Y MI + + E + +K N +EP + + +
Sbjct: 276 ANRFFEEM-KERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRN-IEPTVISYTTM 333
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + +E MK+ G +P+ +Y T++ GL
Sbjct: 334 IKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGL 372
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE+ KP Y +I F G Y+ ++ L P+I +N ++ L
Sbjct: 340 KEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCL-PDIVNYNTIMAGLCRTGK 398
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D ++ +E + VGC P+ SSY T+ + L
Sbjct: 399 ADQALEVFEKLDEVGCPPNVSSYNTLFSAL 428
>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
Length = 1139
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P + Y MI VF +G + E ++ LK+ +P+ + ++ ++ C + +
Sbjct: 893 RPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAG-FQPDEKVYSQMMNCYAKSGMYEHAA 951
Query: 214 DCYELMKTVGCEPDRSSYRTVING 237
D +E MK G P SY +I+
Sbjct: 952 DLFEAMKLRGLRPHEVSYNNLIDA 975
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNA 198
A ++ D+ K + P V Y+ ++ F NG + + EI F S++P+I +++
Sbjct: 244 AARLLRDMIKRK-ITPNVITYSALLDAFVKNGKVLEAKEI--FEEMVRMSIDPDIVTYSS 300
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L D ++LM + GC PD SY T+ING
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGF 340
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|13324802|gb|AAK18850.1|AC082645_20 unknown protein [Oryza sativa Japonica Group]
Length = 825
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 22/151 (14%)
Query: 135 NHCLLAL---KVFEDIR------KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
N LLAL +++D R + + Y I FG L+ +KT
Sbjct: 194 NRLLLALSKENLYDDFRHVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKT 253
Query: 186 ENS-LEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------ 237
+ L P+I N+L++ LV G ++ D +V Y+ MK+ G EPD +YR +++G
Sbjct: 254 ASPPLVPDICTHNSLIRALVVGARVADALV-VYDEMKSFGIEPDVFTYRAIVDGCCKSFR 312
Query: 238 ----LEAMEEVAFSGIIRQDAFKYYGDLEFL 264
L +E+ S ++ DA Y L+ L
Sbjct: 313 MDDALRLFQEMRGSYGVKGDAVVYNSLLDGL 343
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 141 LKVFEDI--RKEQWYKPQVSLYA-DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
L EDI +EQ+ + ++A ++ ++GT G+F H L+ L N E + FN
Sbjct: 73 LSFIEDILEHQEQYNEISTEVFAVRLMTLYGTAGMFDHAHKLFDELPKLNC-ERTVMSFN 131
Query: 198 ALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
ALL V K D + + EL +G PD SY ++N
Sbjct: 132 ALLSACVNSKKFDKIDGFFQELPGNLGIVPDVVSYNILVNAF 173
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V +++ K +P + + ++ F NG + E ++ +K +N++ P ++ +NA
Sbjct: 182 ALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMK-KNNVAPNVRSYNAK 239
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ ++ V+ + MKT G +PD + +++ G
Sbjct: 240 LRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGF 278
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
F +L +Q + A ++F + + + KP + +Y ++ +G + L+
Sbjct: 444 FTYSILLDGFCKQGYLGKAFRLFRAM-QSTYLKPNLVMYTILVHAMCKSGNHKDARKLFS 502
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + L+P +Q + ++ L L D ++ + M+ GC PD SY +I GL
Sbjct: 503 ELFVQ-GLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGL 558
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F + KE +P Y ++ G G + V L + N P + +N +
Sbjct: 654 AWRIFYQL-KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN-YPPNLITYNTI 711
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L CL + +D M T GC PD SSY TVI GL
Sbjct: 712 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750
>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK-- 184
++R L RQ+ A++ F+++ + KP ++Y +I FG + ++++Y LK
Sbjct: 308 LIRYLCRQSKMEEAVEYFQEM-IDSGCKPDAAVYTCLITGFGNR---KRMDMVYDLLKEM 363
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
E P+ +NAL+K + K+ D Y+ M G EP +Y ++
Sbjct: 364 KEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIM 414
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 111 VFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
V+N + K D++A +L LLR A+K+F + K + P V Y +I+
Sbjct: 254 VWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFM-VMKAKGPSPDVRSYTILIRYL 312
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ + YF ++ +P+ + L+ K D+V D + MK GC PD
Sbjct: 313 CRQSKMEEA-VEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPD 371
Query: 228 RSSYRTVI 235
+Y +I
Sbjct: 372 GLTYNALI 379
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P + Y MI VF +G + E ++ LK+ +P+ + ++ ++ C + +
Sbjct: 894 RPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAG-FQPDEKVYSQMMNCYAKSGMYEHAA 952
Query: 214 DCYELMKTVGCEPDRSSYRTVING 237
D +E MK G P SY +I+
Sbjct: 953 DLFEAMKLRGLRPHEVSYNNLIDA 976
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FE++ KE+ P V Y MI + + E + +K N +EP + + +
Sbjct: 276 ANRFFEEM-KERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRN-IEPTVISYTTM 333
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + +E MK+ G +P+ +Y T++ GL
Sbjct: 334 IKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGL 372
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE +P Y ++ G G + V L + N P + +N +L CL
Sbjct: 616 KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN-YPPNLITYNTILDCLCKNGA 674
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +D M T GC PD SSY TVI GL
Sbjct: 675 VNDALDMLYSMTTKGCIPDLSSYNTVIYGL 704
>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 498
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 14/200 (7%)
Query: 50 KPWHNTQKQQVTATRSMLVIEMRDRG----------QNRKPLQRGRNLSIEAIQAVQHLK 99
+P H + T T S+ + E R ++ K + N I + +A+ +
Sbjct: 38 EPKHTITSDKSTNTSSLSLRETRQSKWLMNSEDVIERDSKESKENTNTKIASRKAISIIL 97
Query: 100 RAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL 159
R ++ SK +LL ++ L E + AL+VFE +R++ WYKP V +
Sbjct: 98 RREATKEIIEKKKGSK--KLLPRTVLESLHERITALRWESALQVFELLREQLWYKPNVGI 155
Query: 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219
Y +I + G + L+ + E + + + ALL D E M
Sbjct: 156 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNH-EVYTALLSAYSRSGRFDAAFTLLERM 214
Query: 220 KTV-GCEPDRSSYRTVINGL 238
K+ C+PD +Y +I
Sbjct: 215 KSSHNCQPDVHTYSILIKSF 234
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
A +FE+ K + + V +Y+ +I FG G ++ Y L+ + L P + +N
Sbjct: 655 AYMLFEEA-KSKGIELNVIVYSSLIDGFGKVG---RIDEAYLILEEMMKKGLTPNVYTWN 710
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L+ LV + + + C++ MK + C P+ +Y +INGL
Sbjct: 711 SLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGL 751
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P Y MI +G+ G F++ L LK E P + FN++L CL + D +
Sbjct: 320 PCAYAYNTMIMGYGSAGQFENAYKLLDQLK-ERGCIPSVVSFNSILTCLGKKRKVDEALT 378
Query: 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+E MK EP+ S+Y +I+ L +V + +IR +
Sbjct: 379 LFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDE 416
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE +P Y ++ G G + V L + N P + +N +L CL
Sbjct: 572 KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN-YPPNLITYNTILDCLCKNGA 630
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +D M T GC PD SSY TVI GL
Sbjct: 631 VNDALDMLYSMTTKGCIPDLSSYNTVIYGL 660
>gi|449500403|ref|XP_004161088.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g13600-like [Cucumis sativus]
Length = 618
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLKTENSLEP 191
R H L+ KVFE+I Y P V + +I + NGL + VEIL + + L+P
Sbjct: 306 RCGHVELSWKVFEEI-----YSPGVICFTSIINGYARNGLGKEGVEILKMMI--QRGLKP 358
Query: 192 EIQGFNALLKCLVGFKLRDLVVD---CYELMKTV-GCEPDRSSYRTVIN 236
+ F L L+G LV + +ELMKT+ G EPD Y +++
Sbjct: 359 DKVTF---LCALIGCNHSGLVEEGRFVFELMKTLYGIEPDWKHYSCMVD 404
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++L L + C A + F D + KP V+ Y M+ + T G + L L
Sbjct: 313 SLLNYLCKNGRCREA-RFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDL-LNLMV 370
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
N + P FN + D +D + M+ G PD SY +I+ L
Sbjct: 371 ANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDAL 423
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNG-------LFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ KP + Y I G + +E L ++P I+ + L+K
Sbjct: 757 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL--------GVKPNIKTYTTLIK 808
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA----FSGII 250
L + + CYE MK VG +PD++ Y ++ L + +A +SG++
Sbjct: 809 GWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 861
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVF-GTNGLFQHVEILYFYLK-----TENSLEPEI 193
A VFED+ KE KP V LY ++I F G + + ++ + K T + P I
Sbjct: 539 AFAVFEDMVKEG-MKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 597
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEE 243
GF G R L V +++M+ GC P ++ +INGL E ++E
Sbjct: 598 NGF-----AKSGDMRRSLEV--FDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDE 650
Query: 244 VAFSGI 249
+ +G+
Sbjct: 651 MTLAGV 656
>gi|147862853|emb|CAN80932.1| hypothetical protein VITISV_017362 [Vitis vinifera]
Length = 1697
Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFK 207
K KP + +Y +I F G F LYF + + N+L + + ++ L++ +K
Sbjct: 1431 KTHGLKPSLEIYNLVIHCFARKGEFDRA--LYFLNELKXNNLIADTETYDGLIQSYGKYK 1488
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
+ D + +C + M++ GC PD +Y +I +E + G++++
Sbjct: 1489 MYDELDECVKKMESDGCLPDHITYNLLI------QEFSRGGLLKR 1527
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++ KE + +YA MI+ FG G L+ +K + S P++ +NAL
Sbjct: 463 ANELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS-GPDVYAYNAL 520
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING----------LEAMEEVAFSGI 249
+ +V + + M+ GC D +S+ ++NG +E E + SG
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSG- 579
Query: 250 IRQDAFKY 257
I+ D Y
Sbjct: 580 IKPDGVTY 587
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14820, mitochondrial-like [Glycine max]
Length = 492
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 111 VFNSKFRRLLKFDMIA--VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFG 168
V+N R K D++A V+ E L + A K+FE I K + P V Y MIQ F
Sbjct: 225 VWNEMIDRGFKPDIVAHNVMLEGLLKCKKSDAXKLFE-IMKAKCPSPNVRSYTIMIQDFC 283
Query: 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GF---KLRDLVVDCYELMKTVGC 224
+ V + Y + +P+ AL CL+ GF K D+V + + M+ GC
Sbjct: 284 KQKMMGEV-VEYIDEMVDRECQPDA----ALYTCLITGFGXKKKMDMVYNLLKEMRKRGC 338
Query: 225 EPDRSSYRTVI 235
PD +Y +I
Sbjct: 339 SPDGGTYNALI 349
>gi|255555093|ref|XP_002518584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542429|gb|EEF43971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P + + ++ F NG F E ++ ++++N + P ++ +N+ L+ G +L + V+
Sbjct: 193 EPDLITFNTLLNGFYGNGRFVDGEKIWTLMESKNVV-PNVRSYNSRLR---GLELENRVM 248
Query: 214 DCYEL---MKTVGCEPDRSSYRTVINGL---EAMEEV 244
+ EL M+ G PD SY VI GL E +EEV
Sbjct: 249 EAVELLGEMENKGIRPDVMSYNAVIKGLCNDENVEEV 285
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 91 AIQAVQHLKRAHLHSNPLDHVF-NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFE-DIR 148
A +A++H R +D V N + R D +LREL + A++ FE +R
Sbjct: 117 AEEALRHAIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVR 176
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+EQ Q L + MI + G G + + + F + F+AL+
Sbjct: 177 REQRRNEQGKLASAMISILGRLGQVELAKNV-FETALNEGYGNTVYAFSALISAYGRSGY 235
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVIN 236
D + +E MK+ G +P+ +Y VI+
Sbjct: 236 CDEAIKVFETMKSSGLKPNLVTYNAVID 263
>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 706
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++FED++ P ++ +I ++ +G E + + E+ EP I +
Sbjct: 409 LAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEM-IESGFEPTIFVLTS 467
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
L++C K D VV + + +G EPD
Sbjct: 468 LVQCYGKAKRTDDVVKTFNQLLDMGIEPD 496
>gi|168033663|ref|XP_001769334.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679440|gb|EDQ65888.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 384
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 105 SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
S P+ V + +L +M+ V++ + Q+ A++++E + + Y P L A ++
Sbjct: 185 SRPVADVLDGWPEQLNNDEMLIVVKRVGDQDW-KRAVEIYEWLNSRKLYTPNPLLLATVL 243
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
++ G + + L+ KTE L I+ FNA+L E M GC
Sbjct: 244 RILGRTNQLEIAQDLFS--KTEQELTSSIRVFNAILGAYANQGKWQAAQPILECMVQRGC 301
Query: 225 EPDRSSYRTV 234
EPD +++ +
Sbjct: 302 EPDIATFNLI 311
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE + +YA MI+ FG G L+ +K + S P++ +NAL+ +V +
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS-GPDVYAYNALMSGMVKAGM 529
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING----------LEAMEEVAFSGIIRQDAFKY 257
+ M+ GC D +S+ ++NG +E E + SG I+ D Y
Sbjct: 530 INEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSG-IKPDGVTY 587
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
F ++L L + A +F + E+ P V Y+ +I F E LY
Sbjct: 122 FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYK 181
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDC---YELMKTVGCEPDRSSYRTVINGL 238
+ N + P + +NA L G + + D YE M + GC PD +Y T+I+G
Sbjct: 182 QMIDLNCV-PNVTTYNAFLN---GLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGF 237
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
+ FED++ + P V Y MI + + E + +K N +EP + + L+K
Sbjct: 171 RFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTLIK 228
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570
gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana]
gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana]
gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 805
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL-----EPEIQGF 196
+VFE ++ + +K Y I FG G L+ +K +S+ P+I +
Sbjct: 233 RVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTY 292
Query: 197 NALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254
N+L+ CL G K +D ++ ++ +K G EPD S+YR +I G + DA
Sbjct: 293 NSLIHVLCLFG-KAKDALI-VWDELKVSGHEPDNSTYRILIQGCCKSYRM-------DDA 343
Query: 255 FKYYGDLEF 263
+ YG++++
Sbjct: 344 MRIYGEMQY 352
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 163 MIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221
+I FG + + + +L F EN L P++ + L+K L+ + D V YE M T
Sbjct: 585 LINAFGEDRRVVEAFSVLQFM--RENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642
Query: 222 VGCEPDRSSYRTVINGLE 239
GC PDR + + +GL+
Sbjct: 643 SGCAPDRKARAMLRSGLK 660
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K+F+ + KE P V Y ++ G G Q L+ + ++ P FN L
Sbjct: 561 AWKMFQRM-KEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDC-PPNTISFNTL 618
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L CL DL + M + C PD +Y TVI GL
Sbjct: 619 LDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGL 657
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 126 AVLRELLRQNHCLLALKVFED-IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184
++L L C A +F+ IRK KP V++Y +I + T G + L L
Sbjct: 313 SLLNYLCNNGRCREARFLFDSMIRK--GIKPNVAIYGILIHGYATKGALSEMHDL-LNLM 369
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
EN L P+ FN + + D + + MK G PD +Y +I+ L
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDAL 423
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 163 MIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221
+I FG + + + +L F EN L P++ + L+K L+ + D V YE M T
Sbjct: 585 LINAFGEDRRVVEAFSVLQFM--RENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642
Query: 222 VGCEPDRSSYRTVINGLE 239
GC PDR + + +GL+
Sbjct: 643 SGCAPDRKARAMLRSGLK 660
>gi|225463331|ref|XP_002268109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Vitis vinifera]
Length = 581
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFK 207
K KP + +Y +I F G F LYF + + N+L + + ++ L++ +K
Sbjct: 192 KTHGLKPSLEIYNLVIHCFARKGEFDRA--LYFLNELKANNLIADTETYDGLIQSYGKYK 249
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
+ D + +C + M++ GC PD +Y +I +E + G++++
Sbjct: 250 MYDELDECVKKMESDGCLPDHITYNLLI------QEFSRGGLLKR 288
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGF 196
LAL+V D+R + KP V Y ++ F G ++ Y L + + L+P GF
Sbjct: 407 LALEVLHDMRNKGC-KPNVYSYTILVDGFCKLG---KIDEAYNVLNEMSADGLKPNTVGF 462
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
N L+ V+ + M GC+PD ++ ++I+GL ++E+
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 146 DIRKEQWY---KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
D K+ +Y KP++ ++ +I F T+G + + + T + P++ +N+L+
Sbjct: 339 DAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 398
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L L ++ M+ GC+P+ SY +++G
Sbjct: 399 YWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGF 434
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE +P Y ++ G G + V L + N P + +N +L CL
Sbjct: 537 KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN-YPPNLITYNTILDCLCKNGA 595
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +D M T GC PD SSY TVI GL
Sbjct: 596 VNDALDMLYSMTTKGCIPDLSSYNTVIYGL 625
>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P + + +I F T G + ++ ++K ++ + P++ + L+K + K + V
Sbjct: 399 EPNLVMLNLLINAFSTAGRHLEAQAVFQHIK-DSGMSPDVVTYTTLMKAFMRVKRYEKVS 457
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
+ Y M+ GC PDR + + + ME++
Sbjct: 458 EVYSEMERAGCTPDRKAREMLHDASVTMEQMG 489
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 127 VLRELLRQNHCLLALKVFE---DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+LR LL N AL E + K+ YKP + ++ M+ +F N ++ E + +
Sbjct: 605 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSI 664
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVINGL 238
E+ L P++ +N+L+ V R E++KT+ +PD SY TVI G
Sbjct: 665 H-EDGLNPDLVTYNSLMDMYV---RRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGF 718
>gi|302755642|ref|XP_002961245.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
gi|300172184|gb|EFJ38784.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
Length = 489
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+AL+ F + ++K Y+ MI+V GT G + L+ ++ E L+P++ N
Sbjct: 15 VALEFFTWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQGRKLFDEMR-EKGLKPDLVTVNN 73
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
++KC D +D + G EPD +Y +I+ L V+
Sbjct: 74 MIKCYGSANRMDDAMDLFREFPDFGFEPDVCTYALLIDLLGKAGRVS 120
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
++P V YA +I + G G V L+ L++ L+P+ FN+++ +K L
Sbjct: 99 FEPDVCTYALLIDLLGKAGRVSEVRKLFLELQSRK-LKPDEYVFNSMIANFSKWKDLGLA 157
Query: 213 VDCYELMKTVGCEPDRSSYRTVIN 236
+ + MK G P +Y V+N
Sbjct: 158 DEALDYMKVCGIRPSTVTYAIVLN 181
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 116 FRRLLKFDMI-------AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFG 168
F R+ KF ++ A L L + L+ F D+ P V Y MI
Sbjct: 85 FLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVG-AGIAPTVFTYNIMIGHVC 143
Query: 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR 228
G L+ +K + L P+I +N L+ L D V +E MK +GCEPD
Sbjct: 144 KEGDMLTARSLFEQMK-KMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDV 202
Query: 229 SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262
+Y +IN F G++R AF+++ +++
Sbjct: 203 ITYNALINSF-----CKFKGMLR--AFEFFREMK 229
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
++ L A +FE ++K P + Y +I +G GL L+ +K EP+
Sbjct: 144 KEGDMLTARSLFEQMKK-MGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGC-EPD 201
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVA 245
+ +NAL+ FK + + MK +P+ SY T+I+ L E M ++A
Sbjct: 202 VITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMA 256
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A VF ++ E+ +KP + Y ++ F+ + L + +N ++P+ NA+
Sbjct: 41 AQAVFNNL-TEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKV-ADNGMKPDSILLNAM 98
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + ++ MK GC+P S+Y T+I G
Sbjct: 99 INAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGF 137
>gi|414883744|tpg|DAA59758.1| TPA: hypothetical protein ZEAMMB73_211431 [Zea mays]
Length = 732
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL L H ALK+F+++ E +P +A M++ G+ + + ++ E
Sbjct: 241 VLGALAAAGHVEDALKLFDEM-SEGGVQPIPVTFAIMVRALAHAGMVDRLLEMIGRMRNE 299
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P++ + AL+K +V D + ++ M+ G EPD +Y T++ GL
Sbjct: 300 -VCRPDVFVYTALVKTMVRRGYMDGCMRVWDEMEKDGVEPDTMAYATMVGGL 350
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD--MIAVLRELLRQNHCLLALKVFED 146
I+A QA Q LK H H+ L K + K D + +L Q LK D
Sbjct: 325 IDAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLD 384
Query: 147 IRKEQWYKPQVSLYADMIQVFG-TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
KP V Y +I +G N L + V++ F E EP+ + L+
Sbjct: 385 EMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKV--FEEMQEAGYEPDRVTYCTLIDIHAK 442
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
D+ +D Y M+ VG PD +Y ++N L ++A
Sbjct: 443 AGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLA 482
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E ++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKY 285
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE + +YA MI+ G G L+ +K + P++ +NAL+ LV +
Sbjct: 439 KENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMK-KIGCNPDVYAYNALMSGLVRAGM 497
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ M+ GC PD +S+ ++NGL
Sbjct: 498 IEEAFSALRTMEENGCTPDLNSHNIILNGL 527
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 81 LQRGRNLSIEAIQAVQHLKRAHLHSN-PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLL 139
L RG + +A Q+L R P D +N+ K M+ ELL+
Sbjct: 286 LMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKD----- 340
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
VF + + P Y +I G + L+ + ++ L+P++ +N+L
Sbjct: 341 --AVF------KGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKD-LKPDLVVYNSL 391
Query: 200 LKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+K G + L++ ++M + GC PD +Y +INGL M ++ + ++ DA
Sbjct: 392 VK---GLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAI 447
>gi|168019305|ref|XP_001762185.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686589|gb|EDQ72977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P + Y MI + G + + L+ + +E L P++ +N L+ + + +
Sbjct: 13 PDIVTYNTMIHICSRAGRVREAKSLFKKI-SEKGLVPDVASYNTLISMFIKRGEKQKALQ 71
Query: 215 CYELMKTVGCEPDRSSYRTVI-NGLEAMEEVAFSGII 250
Y+ MKT G PD ++R ++ + + E +A++ +I
Sbjct: 72 YYQKMKTAGVTPDTVTFRILLKHSMLTAEGIAYNAMI 108
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 111 VFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
VF + LK D++ ++R + A++ ++++KE+ ++P + +I F
Sbjct: 521 VFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKER-HRPTTRTFMPIIHGF 579
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+G + ++ ++ + P + FNAL+ LV + V+ + M G P+
Sbjct: 580 ARSGDMRRALEIFDMMRWSGCI-PTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPN 638
Query: 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAAY 274
+Y T+++G ++ + AF+Y+ L+ E E D+ Y
Sbjct: 639 EHTYTTIMHGYASLGDTG-------KAFEYFTKLK-TEGLELDVYTY 677
>gi|242057231|ref|XP_002457761.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
gi|241929736|gb|EES02881.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
Length = 267
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++FE +RK+ WY+P+ YA ++ + G L+ + +E L P + AL
Sbjct: 57 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSER-LRPTADVYTAL 115
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGL--EAMEEVAFSGI-----IR 251
+ D + E MK C+PD ++ + L ++E+++ GI I
Sbjct: 116 VGAYGYSGFLDEALAAVEQMKGAADCKPDGYTFSSRRFDLIPAVLDEMSYLGIECNSVIH 175
Query: 252 QDAFKYYGDLEFLEEDEEDIAA 273
YG EE E ++A
Sbjct: 176 NAIIDGYGKAAMFEEMEGALSA 197
>gi|449450636|ref|XP_004143068.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 812
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLKTENSLEP 191
R H L+ KVFE+I Y P V + +I + NGL + VEIL + + L+P
Sbjct: 464 RCGHVELSWKVFEEI-----YSPGVICFTSIINGYARNGLGKEGVEILKMMI--QRGLKP 516
Query: 192 EIQGFNALLKCLVGFKLRDLVVD---CYELMKTV-GCEPDRSSYRTVIN 236
+ F L L+G LV + +ELMKT+ G EPD Y +++
Sbjct: 517 DKVTF---LCALIGCNHSGLVEEGRFVFELMKTLYGIEPDWKHYSCMVD 562
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 111 VFNSKFRRLLKFDMIAVLRELLRQNHCLLA----LKVFEDIRKEQWYKPQVSLYADMIQV 166
+FNS R K V + ++C+ K D+ + KP + Y ++
Sbjct: 173 LFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGA 232
Query: 167 FGTNGLFQHVEIL-YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCE 225
+ + G+ H E L F L +N L P+I + +LL + + + MK C+
Sbjct: 233 YASRGM--HREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCK 290
Query: 226 PDRSSYRTVING 237
P++ SY +I+
Sbjct: 291 PNKVSYNALIDA 302
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGLFQHVEILY 180
F + ++ L++ C A+++F +R+ + P V Y ++ + G ++ + +
Sbjct: 152 FTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAI- 210
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
F L ++P I +N+LL + + + L+K G PD SY +++N
Sbjct: 211 FDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNA 267
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K KP V +Y +MI V +F E L + +N P FN L+ L
Sbjct: 389 KSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNC-PPNTVTFNTLIGRLCDCGR 447
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVAFSGII 250
++ + M+ GC P+ +Y +++GL E + AF+ +I
Sbjct: 448 VGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVI 491
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF ++ E P + Y MIQV ++ +L F + P + +N +
Sbjct: 306 ARKVFNEMVGEGIL-PSTATYNAMIQVLCKKDSVENA-VLMFEEMVKKGYVPNLTTYNVV 363
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAFSGI 249
++ L D ++ E MKT GCEP+ +Y I GL E++ +
Sbjct: 364 IRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSL 423
Query: 250 IRQDAFKYYGDLEFLEEDEEDI 271
D + F+ + ED+
Sbjct: 424 PNLDTYNVLISAMFVRKKSEDL 445
>gi|297725255|ref|NP_001174991.1| Os06g0710800 [Oryza sativa Japonica Group]
gi|53792631|dbj|BAD53645.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|215693375|dbj|BAG88757.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677390|dbj|BAH93719.1| Os06g0710800 [Oryza sativa Japonica Group]
Length = 492
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGFNALLKCLVGFKLRDLV 212
+P + + +I FGT G +H+E L ++S + P++ + L+K + K + V
Sbjct: 398 EPNLVMLNLLINAFGTAG--RHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKFEKV 455
Query: 213 VDCYELMKTVGCEPDRSSYRTVIN 236
+ Y+ M+ GC PDR + R ++N
Sbjct: 456 SEVYKEMEGAGCTPDRKA-REMLN 478
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + Z MK G +P+ +Y T++ GL E+++ + +J ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKY 285
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V +Y M+ V N +F H L + N P FN +K L + +
Sbjct: 416 PNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC-PPNTITFNTFIKGLCCSGKTEWAMK 474
Query: 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLE 265
M+ GC P+ ++Y V++GL F+ ++A + G++E +E
Sbjct: 475 VLNQMRQYGCAPNVTTYNEVLDGL-------FNAKRTREALQIVGEIEEME 518
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK F I E KP V +Y ++ + FQ + +Y +K + +E + +N L
Sbjct: 127 ALKTFYRI-GEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMK-RDGIELNVYTYNML 184
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LK L D M GC PD SY TV++ +
Sbjct: 185 LKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSM 223
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + +I V+ G + E ++ L+++ P++ + +L+ KL V
Sbjct: 413 KPDIITLNTLINVYAQGGYIERAEEIFNSLESKG-FTPDVMSWTSLMGAYSKRKLYRKCV 471
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
Y+ M GC PDR++ + +++ E+V
Sbjct: 472 SVYQKMLIAGCIPDRATAKVLLSSCRGPEQV 502
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
KF ++ ++Q A+K+F D+ K + KP V Y +I F G F E +
Sbjct: 555 KFTYSTIIDGYVKQQDMATAIKIFRDMEKNKC-KPNVVTYTSLINGFCCQGDFSLAEETF 613
Query: 181 FYLKTENSLEPEIQGFNALLKCLVG-FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
+++ + L P + + L++ + V +ELM T C P+ ++ ++ G
Sbjct: 614 KEMQSRD-LVPNVVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFV 672
Query: 240 AMEEVAFSGIIRQDAFKYYGDLEFLE 265
F G D F + F E
Sbjct: 673 KKTSGRFLG--EPDGFNHGQSFLFFE 696
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P +YA +I F +G F + F L E ++ ++ NA++K + D +
Sbjct: 483 PDAYVYATLIDGFIRSGDFDEARKV-FTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALA 541
Query: 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262
C M PD+ +Y T+I+G +++A A K + D+E
Sbjct: 542 CMNRMNEEHLVPDKFTYSTIIDGYVKQQDMA-------TAIKIFRDME 582
>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
Length = 667
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++FE + K + P V+LY M+ G F+ + ++ + + + P+I FN
Sbjct: 530 LAEEIFEQMLKAR-VVPNVNLYNIMLHNLCKAGQFEQAQKIFLQM-IQKEVSPDIITFNT 587
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L +D + M G EPD ++R +I+GL
Sbjct: 588 LIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGL 627
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGF 196
LAL+V D+R + KP V Y ++ F G ++ Y L + + L+P GF
Sbjct: 401 LALEVLRDMRNKGC-KPNVYSYTILVDGFCKLG---KIDEAYNLLNEMSADGLKPNTVGF 456
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
N L+ V+ + M GC+PD ++ ++I+GL ++E+
Sbjct: 457 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 504
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 114 SKFRRLLKFDMIAVLRELLRQNHCLLALKVFED--IRKEQWYK--------PQVSLYADM 163
SK R +L F L+ L +CL+ L V ED + E+ K P V Y +
Sbjct: 654 SKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTV 713
Query: 164 IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223
I+ F GL Q I T ++P I +N L G +L D + M
Sbjct: 714 IKGFCRKGLMQEA-IRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHN 772
Query: 224 CEPDRSSYRTVING 237
C P +Y+ +++G
Sbjct: 773 CRPSELTYKILVDG 786
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPEIQGFNA 198
A +FE++ K + P Y MI +G G + +YF+ + ++ S EP++ +N
Sbjct: 152 ASGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLD--DTVYFFEEMKSMSCEPDVITYNT 208
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
L+ C F ++ + MK G +P+ SY T+++ + + Q A K+Y
Sbjct: 209 LINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKED-------MMQQALKFY 261
Query: 259 GDLEFL 264
D+ L
Sbjct: 262 VDMRRL 267
>gi|298204661|emb|CBI25159.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
+FD + L + + N C + +F I KP V++Y +I G +H +++
Sbjct: 223 RFDDLHSLLQGMVSNPCPYSDGIFSMIDG----KPSVAMYNILIN--GYVNCREHEKVMT 276
Query: 181 FYLK-TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
Y K ++ ++P++ FN+L+ L ++ ++ MK GC P+ S+ T+I G
Sbjct: 277 VYEKMIKDRVKPDVFTFNSLISSCCRNSQFGLALEMFKEMKDKGCSPNVVSFNTLIKG 334
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ +P +YA +I F + ++ +++ + P+I NA++K F +
Sbjct: 1420 EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME-HKGICPDIVSCNAMIKGYCQFGMM 1478
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVING 237
+ C M+ VGC PD +Y TVI+G
Sbjct: 1479 SEAILCMSNMRKVGCIPDEFTYTTVISG 1506
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 111 VFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
VF + LK D++ ++R + A++ ++++KE+ ++P + +I F
Sbjct: 500 VFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKER-HRPTTRTFMPIIHGF 558
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+G + ++ ++ + P + FNAL+ LV + V+ + M G P+
Sbjct: 559 ARSGDMRRALEIFDMMRWSGCI-PTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPN 617
Query: 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAAY 274
+Y T+++G ++ + AF+Y+ L+ E E D+ Y
Sbjct: 618 EHTYTTIMHGYASLGDTG-------KAFEYFTKLK-TEGLELDVYTY 656
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 155 PQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
P + ++ +I +F G +F+ +L TE +EP + +++L+ G+ L+ VV
Sbjct: 330 PNIVTFSLLINIFCKEGNVFEARGVLK--TMTEMGVEPNVVTYSSLMN---GYSLQAEVV 384
Query: 214 DC---YELMKTVGCEPDRSSYRTVING 237
+ +++M T GC+PD SY +ING
Sbjct: 385 EARKLFDVMITKGCKPDVFSYNILING 411
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 86 NLSIEAIQAVQHLKRAH-LHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVF 144
N I+ + + L+ AH L N L N L + ++ L +Q + A ++F
Sbjct: 441 NTLIDGLCQLGRLREAHDLFKNMLT---NGNLPDLCTYSIL--LDGFCKQGYLAKAFRLF 495
Query: 145 EDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204
+ + + KP + +Y +I + + L+ L + L+P +Q + ++ L
Sbjct: 496 RAM-QSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQ-GLQPNVQIYTTIINGLC 553
Query: 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGIIRQDAF 255
L D ++ + M+ GC P+ SY +I G + V G +R+ F
Sbjct: 554 KEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGF 608
>gi|357131125|ref|XP_003567192.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 457
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219
+ ++ F NG E ++ +K E +LEP+ + +NA L+ LV + V E M
Sbjct: 246 FNTLLNGFSKNGRVDDAEAVWEMMK-ERNLEPDTKSYNAKLRGLVAEGRIEDAVAVVERM 304
Query: 220 KTVGCEPDRSSYRTVING------LEAMEEVAFSGIIRQDAFKYYGDLEFL 264
+ G +PD SY +I G LE +++ + G+++ + G E L
Sbjct: 305 EKEGPKPDTVSYNELIRGYCSAGRLEDAKKL-YDGLVKNECAPNKGTYETL 354
>gi|115529199|dbj|BAF34332.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 395
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 105 SNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
S P+ V + +L +M+ V++ + Q+ A++++E + + Y P L A ++
Sbjct: 196 SRPVADVLDGWPEQLNNDEMLIVVKRVGDQDW-KRAVEIYEWLNSRKLYTPNPLLLATVL 254
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
++ G + + L+ KTE L I+ FNA+L E M GC
Sbjct: 255 RILGRTNQLEIAQDLFS--KTEQELTSSIRVFNAILGAYANQGKWQAAQPILECMVQRGC 312
Query: 225 EPDRSSYRTV 234
EPD +++ +
Sbjct: 313 EPDIATFNLI 322
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++FE + K Q P V+LY M+ G + + ++ ++ + + P+I +N
Sbjct: 523 LAEELFEQMLKAQ-IDPNVNLYNIMLHHLCKVGDLKRAQKIFLHM-IQKEILPDIVTYNT 580
Query: 199 LLKCLVGFKLRDL-VVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L G R + +D ++ M+T G EPD +++ +INGL
Sbjct: 581 LIYWL-GKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGL 620
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK--CLVGF--KLRDL 211
VS+Y +I F G + +++T N EP + +N LL C +G K +L
Sbjct: 364 SVSIYNALISGFWRAGSIDKAYTIISFMRT-NGCEPGVVTYNILLNHYCTIGMMEKAENL 422
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGL 238
+ M+T G PDR SY ++ GL
Sbjct: 423 ITK----METSGVNPDRYSYNQLLKGL 445
>gi|168049701|ref|XP_001777300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671276|gb|EDQ57830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 291
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL--YFYLKTENSLEP 191
+ H A ++F+ ++K + KP V Y +I V+ G++ L F +P
Sbjct: 129 KQHVKEAQRIFDTMKKRRGIKPTVVTYTSLITVYANAGIYSSPNQLCPLFGEMVAEKCQP 188
Query: 192 EIQGFNALLK-CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
++ F +L+ C G + + +E MK G +P+ +Y +IN
Sbjct: 189 NVKTFTSLINSCRKGGHVEE-AQTIFEAMKEYGVKPNVVTYNALIN 233
>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 13/147 (8%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA +AV KR +S ++LL ++ L E + AL+VFE +R+
Sbjct: 84 EATKAVIEKKRGPTNS-----------KKLLPQTVLEALHERITALRWASALEVFELLRE 132
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
+ WY+P +Y +I + G L+ + E + + ALL L
Sbjct: 133 QLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTH-ESYTALLSAYGRSGLF 191
Query: 210 DLVVDCYELMK-TVGCEPDRSSYRTVI 235
D E MK T C PD +Y +I
Sbjct: 192 DKAFSIMEEMKNTPDCRPDVHTYSILI 218
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 111 VFNSKFRRLLKFDMIAVLRELLRQNHCLLA----LKVFEDIRKEQWYKPQVSLYADMIQV 166
+FNS R K V + ++C+ K D+ + KP + Y ++
Sbjct: 173 LFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGA 232
Query: 167 FGTNGLFQHVEIL-YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCE 225
+ + G+ H E L F L +N L P+I + +LL + + + MK C+
Sbjct: 233 YASRGM--HREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCK 290
Query: 226 PDRSSYRTVING 237
P++ SY +I+
Sbjct: 291 PNKVSYNALIDA 302
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGLFQHVEILY 180
F + ++ L++ C A+++F +R+ + P V Y ++ + G ++ + +
Sbjct: 152 FTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAI- 210
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
F L ++P I +N+LL + + + L+K G PD SY +++N
Sbjct: 211 FDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNA 267
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 111 VFNSKFRRLLKFDMIAVLRELLRQNHCLLA----LKVFEDIRKEQWYKPQVSLYADMIQV 166
+FNS R K V + ++C+ K D+ + KP + Y ++
Sbjct: 173 LFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGA 232
Query: 167 FGTNGLFQHVEIL-YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCE 225
+ + G+ H E L F L +N L P+I + +LL + + + MK C+
Sbjct: 233 YASRGM--HREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCK 290
Query: 226 PDRSSYRTVING 237
P++ SY +I+
Sbjct: 291 PNKVSYNALIDA 302
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGLFQHVEILY 180
F + ++ L++ C A+++F +R+ + P V Y ++ + G ++ + +
Sbjct: 152 FTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAI- 210
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
F L ++P I +N+LL + + + L+K G PD SY +++N
Sbjct: 211 FDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNA 267
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D+ KE +P Y +++ F G + YF E L P + AL+
Sbjct: 467 DLMKENGCEPDEWTYNELVSGFSKWGKLESAS-FYFQEMVECGLNPNPVSYTALIDGHSK 525
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D+ + + M+ +GC P+ SY VINGL
Sbjct: 526 DGKVDIALSLLKRMEEMGCNPNVESYNAVINGL 558
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 29/212 (13%)
Query: 35 SSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQA 94
+ SV + W + +P++ K + SML +RDR P R L I+A +
Sbjct: 88 TESVIQFFYW--ISKRPFY---KHNMNCFISMLNRLVRDR--VFAPADHIRILMIKACRN 140
Query: 95 VQHLKRAHLHSNPLD--------HVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+ ++R N + + N+ +L KF+M+ R L +Q
Sbjct: 141 EEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQ------------ 188
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+P + + +I + G + E++ + + L P++ + +L+
Sbjct: 189 -MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI-FQYDLSPDVFTYTSLILGHCRN 246
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL ++ M GC+P+ +Y T+INGL
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 278
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184
+++ R R + L A++VF +++ + Q S + G N L + + ++
Sbjct: 89 LSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQL--KLALRFYRYM 146
Query: 185 TENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
E + P + N L+K L D + + M GC PD +Y T+INGL
Sbjct: 147 REMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGL 201
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D+ KE +P Y +++ F G + YF E L P + L+
Sbjct: 509 DLMKENGCEPDEWTYNELVSGFSKWGKLESAS-FYFQEMVECGLNPNPVSYTTLIDGHSK 567
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D+ + E M+ +GC P+ SY VINGL
Sbjct: 568 DGKVDIALSLLERMEEMGCNPNVESYNAVINGL 600
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 29/212 (13%)
Query: 35 SSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQA 94
+ SV + W + +P++ K + SML +RDR P R L I+A +
Sbjct: 130 TESVIQFFYW--ISKRPFY---KHNMNCFISMLNRLVRDR--VFAPADHIRILMIKACRN 182
Query: 95 VQHLKRAHLHSNPLD--------HVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+ ++R N + + N+ +L KF+M+ R L +Q
Sbjct: 183 EEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQ------------ 230
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+P + + +I + G + E++ + + L P++ + +L+
Sbjct: 231 -MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI-FQYDLSPDVFTYTSLILGHCRN 288
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL ++ M GC+P+ +Y T+INGL
Sbjct: 289 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 320
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQ-VFGTNG-LFQHVEILYFYLKTENSLEPEIQGFN 197
ALK+F I KE KP V +Y ++ + G +G F + +Y ++ E +EP + +N
Sbjct: 127 ALKMFYRI-KEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGE-GMEPNVFTYN 184
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
LLK L D M GC PD SY TV+
Sbjct: 185 VLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVV 222
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK--CLVGFKLRDL 211
+P V +Y M+ V N +F L + T+ P + FN +K C G L +
Sbjct: 420 RPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGC-PPTVVTFNTFIKGLCCGGRVLWAM 478
Query: 212 -VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
VVD M+ GC PD +Y +++GL ++ E+
Sbjct: 479 RVVD---QMQRYGCLPDTRTYNELLDGLFSVNEL 509
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 98 LKRAHLHSNPLDHVFNSKFRRLLKF-------DMIAVLRELLRQNHCLLALKVFEDIRKE 150
+ R + S + N+ F ++ KF D +L L++ L A VF+ + K
Sbjct: 187 ISRRYARSGKVKEAMNT-FEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKM-KI 244
Query: 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
+ + P + Y +++ +G ++ +Y +K E EP++ + L+ + D
Sbjct: 245 RRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDE-GFEPDVVTYGILINAYCKVRKYD 303
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
++ + M++ C+P + T+INGL ++ ++
Sbjct: 304 DAIELFREMESKNCQPSPHIFCTLINGLGSVRRLS 338
>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
Length = 561
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K+ P V Y +I + + L E +K E L+P +Q F L+
Sbjct: 391 KQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMK-EADLQPNLQTFCVLMTGYANGNK 449
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
D ++ +E MK G EP+R Y ++N
Sbjct: 450 LDNMMRSFETMKLAGLEPNRHVYTVLVNA 478
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 116 FRRLLKFDMIAVLRE-------LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFG 168
F+++ M+ LR L + H ALK+ + +E+ +P + LY +IQ
Sbjct: 319 FKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSM-QERKLEPDIVLYNILIQGMF 377
Query: 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR 228
G + + L+ L N + P ++ +N ++K L+ L D + M+ G PD
Sbjct: 378 IAGKLEVAKELFSKL-FANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDS 436
Query: 229 SSYRTVINGL 238
SY +I G
Sbjct: 437 CSYNVIIQGF 446
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P + ++ V G+ + F TE +EP I +NAL+ G+ LR + D
Sbjct: 189 PNTVTFTILVDVLCKKGMVSEARCV-FETMTEKGVEPNIYTYNALMN---GYCLRLEMND 244
Query: 215 C---YELMKTVGCEPDRSSYRTVING 237
+E+M GC P SY +ING
Sbjct: 245 ASKVFEIMVGKGCAPSVHSYSILING 270
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE++ K + P Y MI FG G + +F + EP++ +NAL
Sbjct: 114 ARGLFEEM-KFRGLIPDTVTYNSMIDGFGKVGRLDDT-VCFFEEMKDMCCEPDVITYNAL 171
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259
+ C F ++ + MK G +P+ SY T+++ G+++Q A K+Y
Sbjct: 172 INCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF------CKEGMMQQ-AIKFYV 224
Query: 260 DL 261
D+
Sbjct: 225 DM 226
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP +S +I + G + E ++ L+++ L P++ + +L+ KL V
Sbjct: 404 KPDISTLNTLINAYAQGGYIEKAEEVFNSLESKG-LTPDVMSWTSLMGAYAQRKLFRKCV 462
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
++ M GC PDR++ + ++ + E+V
Sbjct: 463 SIFQKMVKAGCIPDRATAKVFLSSCRSPEQV 493
>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197
++A K+ E++ K ++ P V Y+ I + F++VE ++ ++ E +P + +
Sbjct: 243 VVARKIMEEMEKHGFH-PDVVSYSCFIAAYCEQKDFRNVEAVFDEMQ-EKGCKPNVITYT 300
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257
++ L + + ++ YE MK GC PD Y ++I L SG I+ DA+
Sbjct: 301 TVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQ------SGRIK-DAWDV 353
Query: 258 YGDLE 262
+ D+E
Sbjct: 354 FEDME 358
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 89 IEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD--MIAVLRELLRQNHCLLALKVFED 146
I+A QA Q LK H H+ L K + K D + +L Q LK D
Sbjct: 325 IDAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLD 384
Query: 147 IRKEQWYKPQVSLYADMIQVFG-TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
KP V Y +I +G N L + V++ F E EP+ + L+
Sbjct: 385 EMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKV--FEEMQEAGYEPDRVTYCTLIDIHAK 442
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
D+ +D Y M+ VG PD +Y ++N L ++A
Sbjct: 443 AGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLA 482
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 178 ILYF--YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+L+F +K++ P++ + L+ L+ D VD ++ M GC PD +Y T++
Sbjct: 487 LLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLM 546
Query: 236 NGL 238
NGL
Sbjct: 547 NGL 549
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L R+ LL++++ ++IR E Y+ L +I +G GL ++ ++ + ++
Sbjct: 114 LFRKGPLLLSMELLKEIR-ESGYRITDELMCVLIGSWGRLGLAKYCNDVFAQISFL-GMK 171
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P + +NA++ LV +L ++ M++ C+PDR +Y +I+G+
Sbjct: 172 PSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGV 219
>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF-QHVEILYFYLK 184
V+ L R+ + A ++ ++ + + P Y+ +I+ G+ + +EI F L
Sbjct: 416 GVISSLCRKGNTYPAFQLLYEM-IQSGFVPDPYTYSSLIRGLCVEGMLDEALEI--FRLL 472
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
EN P + FNAL+ DL ++ +E+M G P+ ++Y ++ G+ EE
Sbjct: 473 EENDYRPILGNFNALILGFCKSGRTDLSLEIFEMMILKGYTPNETTYTILVEGIAHEEE 531
>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LY +K E S P++ +N L+ V ++V + ++ MKT G PD SY +I+GL
Sbjct: 394 LYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGL 453
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A + LL+ ALKVF ++ KE+ P V Y+ +I F G + F L
Sbjct: 529 AFIHGLLKNGRVQEALKVFSEL-KEKGLVPDVFTYSSLISGFCKQGEVEKA----FELHD 583
Query: 186 ENSLE---PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
E L+ P I +NAL+ L ++ M G EPD +Y T+I+G E
Sbjct: 584 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643
Query: 243 EVA 245
VA
Sbjct: 644 NVA 646
>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 509
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL D+ K Q KP + Y +I G F +K E+ LE + + ++ L
Sbjct: 156 ALSALRDM-KVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMK-ESGLELDSETYDGL 213
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
L F++ D + +C + M+ GC PD +Y +I +E A +G++++
Sbjct: 214 LGAYGKFQMYDEMGECVKKMELEGCSPDHITYNILI------QEYARAGLLQR 260
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 110 HVFNSKFRRLLKFDMIAVLRELLRQNHCLL-----------------ALKVFEDIRKEQW 152
HV + R L + E LR +CL+ AL F ++++
Sbjct: 315 HVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTG 374
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
+K Y M+ + G F + L + + +P + +N L+ +
Sbjct: 375 FKHDGHTYTTMVGILGRARQFGAINKLLAEM-VRDGCQPNVVTYNRLIHSYGRANYLNEA 433
Query: 213 VDCYELMKTVGCEPDRSSYRTVIN 236
V ++ M+ GC+PDR +Y T+I+
Sbjct: 434 VSVFDRMQEAGCQPDRVTYCTLID 457
>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 153 YKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+ P Y+ +I+ G L++ +EI F L E+ P+I FNAL+ DL
Sbjct: 442 FTPDSYTYSSLIRGLCIEGMLYEAMEI--FKLLEEDHYRPDIDNFNALILGFCKSHRTDL 499
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
++ +E+M G P ++Y ++ G+ EE
Sbjct: 500 SLEVFEMMIEKGYTPSETTYTILVEGIIHEEE 531
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +FE++R Q+ +P V Y ++I+ G G + ++ E P+ N +
Sbjct: 280 ALGLFEEMR-HQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGC-RPDTVLMNNM 337
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D + +E M+T+ C P +Y T+I L
Sbjct: 338 INFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKAL 376
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++F+++ KE +YA MI+ G G L+ + P + +NA
Sbjct: 455 LANELFQEL-KENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEM-NRLGCTPNVYAYNA 512
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L + D + M+ GC PD +SY ++N L
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNAL 552
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +VF D+ K+ + P V Y +I + G + YF + + P + +NAL
Sbjct: 541 AEEVFSDMLKKGIH-PSVVTYTVLIHSYAVRGRLDFAK-KYFDEMQDKGVSPNVITYNAL 598
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259
+ L + D+ + + M++ G P++ +Y +IN ++ QDA K Y
Sbjct: 599 IYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQ-------YWQDALKLYK 651
Query: 260 DL 261
D+
Sbjct: 652 DM 653
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
R ++ + I V R + + A+++F + E + V + ++ V GLF
Sbjct: 111 RVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRA 170
Query: 177 EILYFY---LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
L FY + + ++ P + FN ++K + L D ++ + M CEPD +Y T
Sbjct: 171 --LEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCT 228
Query: 234 VINGL 238
+++GL
Sbjct: 229 LMDGL 233
>gi|90399282|emb|CAH68243.1| H0306F03.10 [Oryza sativa Indica Group]
gi|125549952|gb|EAY95774.1| hypothetical protein OsI_17648 [Oryza sativa Indica Group]
Length = 442
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P++ Y +I+ FG G + V I++ ++ E L P+ +N+L+ L+ + DL
Sbjct: 347 PRMDTYVMLIKRFGRWGFLRPVFIVWKAME-EQGLSPDAFAYNSLIDALLQKGMVDLARK 405
Query: 215 CYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGII 250
E M + G P R T I G E+ + A SG++
Sbjct: 406 YDEEMLSKGLSPKPRKELGTKIPGAESDSDNALSGVL 442
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL + + H +AL++F+ +R++ +Y+P+ Y +I + G + L+
Sbjct: 98 VLSYRIHKRHWSIALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHELF------ 151
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVD-----CYELMKTVGCEPDRSSYRTVINGL 238
NS+ + G L L+ ++ +VD E+M C+PD +Y T+I L
Sbjct: 152 NSIHEDGCGSTELYTALIAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKAL 208
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQ-HVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
K++ KP Y +I G +E+L + + P+I +N +L CL K
Sbjct: 328 KKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMI--SDGCVPDIVNYNTILACLCKQK 385
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + +E + VGC P+ SSY ++ + L
Sbjct: 386 RADEALSIFEKLGEVGCSPNASSYNSMFSAL 416
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FED+ KP V Y +I G NG +L+ ++ E P++ ++ L
Sbjct: 482 ASGLFEDMNASSC-KPDVITYNSLINCLGKNGDLDEAHMLFKEMQ-EKGYGPDVFTYSIL 539
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C D+ + + M GC P+ +Y +++ LE
Sbjct: 540 IECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLE 579
>gi|168060335|ref|XP_001782152.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666390|gb|EDQ53046.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D + VL+E + LL LK+FE + W++ V Y +I +G G E + F
Sbjct: 11 DWLTVLKEFDNRLERLLYLKIFEWGLLQSWFEAGVRDYTKLIDKYGREGNVVEAEQM-FR 69
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ E + ++ F L+ K+ + V + + G E D Y+TVI
Sbjct: 70 IMEERGIPADLGAFTVLIAAYGRAKMLEKVKQVLQDVSLAGLELDAVFYKTVI 122
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
R ++ + I V R + + A+++F + E + V + ++ V GLF
Sbjct: 95 RVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRA 154
Query: 177 EILYFY---LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
L FY + + ++ P + FN ++K + L D ++ + M CEPD +Y T
Sbjct: 155 --LEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCT 212
Query: 234 VINGL 238
+++GL
Sbjct: 213 LMDGL 217
>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LY +K E S P++ +N L+ V ++V + ++ MKT G PD SY +I+GL
Sbjct: 394 LYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGL 453
>gi|115451497|ref|NP_001049349.1| Os03g0211600 [Oryza sativa Japonica Group]
gi|113547820|dbj|BAF11263.1| Os03g0211600, partial [Oryza sativa Japonica Group]
Length = 429
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L+ + ALK+F++I + V +Y +I V G ++ VE L+ L E
Sbjct: 227 ILKAVATTEGYFAALKMFDEIEESDKKNVDVIVYNTVISVCGRAKDWRQVERLWRRLG-E 285
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
NSL + ++ L+ V +L VD Y+ M G +P + +I
Sbjct: 286 NSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFKSGIDPSEDILKAII 334
>gi|297842697|ref|XP_002889230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335071|gb|EFH65489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 580
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF-QHVEILYFYLK 184
+V+ + R+ + A ++ ++ + + P Y+ +I+ G+F +E+L +
Sbjct: 432 SVITSMCRKGNTFAAFQLLYEMTR-CGFDPDAHTYSALIRGLCLEGMFIGAMEVLSIMEE 490
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL------ 238
+E +P + FNA++ L + DL ++ +E+M P+ ++Y ++ G+
Sbjct: 491 SEYH-KPTVDNFNAMILGLCKIRRTDLALEVFEMMVGKKRMPNETTYAIIVEGIAHEDEL 549
Query: 239 ----EAMEEVAFSGIIRQDA 254
E +EE+ +I Q+A
Sbjct: 550 ELAKEVLEELRSRKVIGQNA 569
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL-FQHVEILYFYLKTENSLEPEIQGFNA 198
A+ VF+ + +E+ KP + Y ++ V+G G+ + + L +K+ + + P+ +N
Sbjct: 236 AVLVFKKM-EEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKS-SGVAPDDYTYNT 293
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN----------GLEAMEEVAFSG 248
L+ C L + +E MK G PD+ ++ T+++ +E ++E+ FSG
Sbjct: 294 LISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSG 353
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFE+I P + + ++ VFG NG+ V ++ +K + PE FN L+
Sbjct: 448 MKVFEEIEICNC-APDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERDTFNTLI 505
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ Y+ M G PD SSY V+ L
Sbjct: 506 SAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAAL 543
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 116 FRRLLKFDMIAVLRE-------LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFG 168
F ++ KF + VL + L + H A +VF+ + K++ ++P + Y +++ +G
Sbjct: 202 FEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKM-KDRKFRPDIKSYTILLEGWG 260
Query: 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR 228
++ +Y +K E EP+ + L+ + D V+ + M+ C P
Sbjct: 261 QEQNLLRLDEVYREMKDEG-FEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTP 319
Query: 229 SSYRTVINGL 238
Y T+INGL
Sbjct: 320 HIYCTLINGL 329
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V + +R + V L + +I FG + + ++K EN L P++ + L
Sbjct: 556 ALNVVKAMRADGLEASTVVLNS-LINAFGEDRRIAEAFSVLQFMK-ENGLRPDVITYTTL 613
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+K L+ + + V YE M T GC PDR + + + L M+ +
Sbjct: 614 MKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHM 658
>gi|413917168|gb|AFW57100.1| hypothetical protein ZEAMMB73_992270 [Zea mays]
Length = 442
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219
Y MI ++G G Q V + LK + +EP++ +N L+K ++ + V + M
Sbjct: 337 YNIMINIYGRRGWIQDVSNVLAELK-DRGVEPDLYSYNTLIKAYGIARMPEDAVKLMQEM 395
Query: 220 KTVGCEPDRSSYRTVINGLEAME 242
+ G PDR +Y +I L+ E
Sbjct: 396 RVKGISPDRVTYANLIAALQRNE 418
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNA 198
AL V + +R + V L + ++ FG + + + +L F EN L P++ +
Sbjct: 570 ALNVVKAMRADGLEASTVVLNS-LMNAFGEDRRVVEAFSVLQFM--KENDLRPDVITYTT 626
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
L+K L+ + D V YE M T GC PDR + + + L M+
Sbjct: 627 LMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 670
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 20/187 (10%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHS----NPLDHVFNSKFRRL- 119
S ++ RDRG +K R + +Q +H + + N L H ++ F R+
Sbjct: 380 SRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDA-FNRMR 438
Query: 120 ---LKFD------MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN 170
++ D +I R+ R + A+++FE++R E P + Y MI + G
Sbjct: 439 EEGIEPDVVTWNTLIDAHRKGGRHDR---AMELFEEMR-ESNCPPGTTTYNIMINLLGEQ 494
Query: 171 GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
+ VE + +K E L P I + L+ ++C E+MK G +P +
Sbjct: 495 ERWVGVETMLSEMK-EQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTM 553
Query: 231 YRTVING 237
Y ++N
Sbjct: 554 YHALVNA 560
>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
Length = 484
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + YA +I + NG+ + L LK E L P++ FN LLK + L +
Sbjct: 237 KPNLRTYAILISCYCQNGMPERGLQLLSRLKFE-GLHPDVVAFNTLLKGYSQENDQQLKL 295
Query: 214 D-CYELMKTVGCEPDRSSYRTVIN 236
+ +LM G PD ++Y T++N
Sbjct: 296 EMVLDLMAANGVRPDVTTYSTIMN 319
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE + P + Y +I G GL ++ +K + +P++ +NAL+ C F+
Sbjct: 282 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC-DPDVITYNALINCFCKFER 340
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVAFSGIIRQDAFKYYGDL 261
+ MK G +P+ +Y T I+ E M Q+A K++ D+
Sbjct: 341 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGM---------LQEAIKFFVDM 386
>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
Length = 561
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K+ P V Y +I + + L E +K E L+P +Q F L+
Sbjct: 391 KQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMK-EADLQPNLQTFCILMTGYANGNK 449
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
D ++ +E MK G EP+R Y ++N
Sbjct: 450 LDNMMRSFETMKLAGLEPNRHVYTVLVNA 478
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 110 HVFNSKFRRLLKFDMIAVLRELLRQNHCLL-----------------ALKVFEDIRKEQW 152
HV + R L + E LR +CL+ AL F ++++
Sbjct: 324 HVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTG 383
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
+K Y M+ + G F + L + + +P + +N L+ +
Sbjct: 384 FKHDGHTYTTMVGILGRARQFGAINKLLAEM-VRDGCQPNVVTYNRLIHSYGRANYLNEA 442
Query: 213 VDCYELMKTVGCEPDRSSYRTVIN 236
V ++ M+ GC+PDR +Y T+I+
Sbjct: 443 VSVFDRMQEAGCQPDRVTYCTLID 466
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ +F D E+ P V Y+ +I G G L ++ + + P + +N+L
Sbjct: 455 AITLF-DAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI-PNVYTYNSL 512
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ L G D ++ + M GC PD +Y T+I+ L E V
Sbjct: 513 ISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMV 557
>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYF 181
F A+L L++ N +A F+ I + KP S Y MI+ F G+ + ++
Sbjct: 165 FSWNAILGVLVKVNQINVAKSFFDQIVNDAVVKPDASTYTTMIRGFCKVGMIDNARKVF- 223
Query: 182 YLKTENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
E EP + N L+ C G + C +M++ C PD +Y T+I+G
Sbjct: 224 ---DEMICEPNLITCNTLINGYCKKGDMENARIFLC-RMMESKDCLPDTVTYSTLIDG 277
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V + +R + V L + +I FG + + ++K EN L P++ + L
Sbjct: 556 ALNVVKAMRADGLEASTVVLNS-LINAFGEDRRIAEAFSVLQFMK-ENGLRPDVITYTTL 613
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+K L+ + + V YE M T GC PDR + + + L M+ +
Sbjct: 614 MKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHM 658
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ +P +YA +I F + ++ +++ + P+I NA++K F +
Sbjct: 1251 EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME-HKGVCPDIVSCNAMIKGYCQFGMM 1309
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVING 237
+ C M+ VGC PD +Y TVI+G
Sbjct: 1310 SEAILCMSNMRKVGCIPDEFTYTTVISG 1337
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
+ P + Y +I G G + + L+ ++ + P +Q +N+++ L +
Sbjct: 1044 FLPTLVTYGSLINWLGKKGDLEKIGSLFLEMR-KRGFSPNVQIYNSVIDALCNCRSATQA 1102
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGL 238
+ + M GC+PD ++ T+I GL
Sbjct: 1103 MVILKQMFASGCDPDIITFNTLITGL 1128
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 136 HCLL-------ALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
HCL+ A+++F +R+ + P V Y ++ + G ++ + ++ + E
Sbjct: 301 HCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAE- 359
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P I +NALL + ++ ++L+K G PD SY +++N
Sbjct: 360 GVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNA 409
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++FE++ E+ P V Y ++ F G F V+ L+ + + + P I FN L
Sbjct: 176 AYRLFEEML-EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV-PNIFTFNNL 233
Query: 200 LKCLVGF-KLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
L GF K+ D+V + + L M+++GC PD SY T++ G+
Sbjct: 234 LD---GFCKMGDMV-EAHRLFLEMRSLGCPPDVVSYNTLMRGM 272
>gi|224122684|ref|XP_002318900.1| predicted protein [Populus trichocarpa]
gi|222859573|gb|EEE97120.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+ALK+F ++R ++ +P + Y ++ F GL + E ++ ++ E+ LEP++ +NA
Sbjct: 43 MALKLFNEMRSQKC-RPDICTYTALVNAFAREGLCEKAEEIFEQMQ-EDKLEPDVYTYNA 100
Query: 199 LLK 201
L++
Sbjct: 101 LME 103
>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
Length = 822
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+D V NS R + + ++REL R+ L + VF+ ++ ++ Y + +Y MI++
Sbjct: 94 VDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKSQKNYCARNDIYNMMIRLH 153
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ L+F ++ + S +P+ + ++AL+ ++ + M P
Sbjct: 154 ARHNWVDQARGLFFEMQ-KWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPS 212
Query: 228 RSSYRTVING 237
RS+Y +IN
Sbjct: 213 RSTYNNLINA 222
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE P + Y I G Q + + + + L+P ++ + L+K L
Sbjct: 716 KEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEM-ADVGLKPNLKTYTTLIKGWAKASL 774
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL----EAMEEVAFSGII 250
D + +E MK G +PD ++Y ++ L ME ++GI+
Sbjct: 775 PDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 820
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y I + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + +I ++ Y
Sbjct: 227 IKGYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKY 285
>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
Length = 427
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
L+P+ +N L+ C +L D YE +KT GC P+ +++RT+I
Sbjct: 270 GLKPDTISYNYLMTCYCKNQLMDEAQKVYEDLKTNGCNPNAATFRTLI 317
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K KP V +Y +MI V +F E L + +N P FN L+ L
Sbjct: 336 KSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNC-PPNTVTFNTLIGRLCDCGR 394
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVAFSGII 250
++ + M+ GC P+ +Y +++GL E + AF+ +I
Sbjct: 395 VGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVI 438
>gi|125579821|gb|EAZ20967.1| hypothetical protein OsJ_36620 [Oryza sativa Japonica Group]
Length = 408
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ +P +YA +I F + ++ +++ + P+I NA++K F +
Sbjct: 178 EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME-HKGVCPDIVSCNAMIKGYCQFGMM 236
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
+ C M+ VGC PD +Y TVI+G E
Sbjct: 237 SEAILCMSNMRKVGCIPDEFTYTTVISGYAKQE 269
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D+ KE +P Y +++ F G + YF E L P + AL+
Sbjct: 467 DLMKENGCEPDEWTYNELVSGFSKWGKLESAS-FYFQEMVECGLNPNPVSYTALIDGHSK 525
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D+ + + M+ +GC P+ SY VINGL
Sbjct: 526 DGKVDIALSLLKRMEEMGCNPNVESYNAVINGL 558
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 29/212 (13%)
Query: 35 SSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQA 94
+ SV + W + +P++ K + SML +RDR P R L I+A +
Sbjct: 88 TESVIQFFYW--ISKRPFY---KHNMNCFISMLNRLVRDR--VFAPADHIRILMIKACRN 140
Query: 95 VQHLKRAHLHSNPLD--------HVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+ ++R N + + N+ +L KF+M+ R L +Q
Sbjct: 141 EEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQ------------ 188
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+P + + +I + G + E++ + + L P++ + +L+
Sbjct: 189 -MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI-FQYDLSPDVFTYTSLILGHCRN 246
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL ++ M GC+P+ +Y T+INGL
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 278
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ ++E ++K W KP Y M+++FG G ++ +K + ++P +N +
Sbjct: 132 AVALYESVKKSGW-KPDKVTYGTMVRLFGRAGYISAAVSIFDEMKG-SGIQPGSVVYNIM 189
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN----GLEAMEEVAFSGIIRQD 253
+ CL + ++ MK G +P+ + TV+ + ME + +RQD
Sbjct: 190 ISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQD 247
>gi|449476280|ref|XP_004154693.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 241
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A ++ +RKE WY+P + Y DM+ + N + + ++ LK E L + F
Sbjct: 100 IASLLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQ-HTFGD 158
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+++ + + +D Y M+ P +R ++ GL E+ ++ D + +
Sbjct: 159 IIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQ--VKDDFLELF 216
Query: 259 GDL-------EFLEEDEE 269
D+ + EEDE+
Sbjct: 217 PDMIVYDPPEDLFEEDED 234
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L F TE +EP+I +NAL+ +L + +E+M GC P SY +ING
Sbjct: 324 LVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILING 382
>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 692
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D + +L ++ N LLALK F+ + V LY ++V + F+ E L+
Sbjct: 125 DAVFILNTMVNPNTALLALKYFQPKINPAKH---VVLYNVTLKVLRESRDFEGAEKLFDE 181
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ + ++P+ F+ L+ C L + V+ +E M GCEPD
Sbjct: 182 M-LQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMSGFGCEPD 225
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV--GF 206
K + YKP Y ++ VFG G+F + ++ EN+ P+ +N ++ V GF
Sbjct: 320 KSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEME-ENNCPPDAVTYNEVVAAYVRAGF 378
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
VV + M + G P+ +Y T+IN
Sbjct: 379 HEEGAVV--IDAMASKGIMPNAVTYTTIIN 406
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++L+ D + VL + LLA F RK +V LY ++VF E
Sbjct: 140 KILEQDAVIVLNNMTNPETALLAFGFF---RKRLKPSREVILYNVTLKVFRKCRNLDRAE 196
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ + E ++P+ F+ ++ C L + V+ +E M GC PD +Y +I+
Sbjct: 197 KLFDEM-LERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDA 255
>gi|302759176|ref|XP_002963011.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
gi|300169872|gb|EFJ36474.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
Length = 2074
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKV 143
G + S E ++ + LKR H + + VL+++ ++ L+LK+
Sbjct: 1509 GASWSSEMVEKLDRLKRGITHPH----------------QVCVVLKKI--KHDASLSLKL 1550
Query: 144 FEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203
F + +K + Y+ MI + G +G + E L+ ++ E L + N +++C
Sbjct: 1551 FTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQ-ELGLRLDTFAVNNMIRCY 1609
Query: 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+D Y M GC PD ++ +I+
Sbjct: 1610 TRVNRIQEALDLYRKMPYFGCHPDNCTFGLLID 1642
>gi|108706807|gb|ABF94602.1| expressed protein [Oryza sativa Japonica Group]
gi|125585367|gb|EAZ26031.1| hypothetical protein OsJ_09884 [Oryza sativa Japonica Group]
Length = 582
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L+ + ALK+F++I + V +Y +I V G ++ VE L+ L E
Sbjct: 227 ILKAVATTEGYFAALKMFDEIEESDKKNVDVIVYNTVISVCGRAKDWRQVERLWRRLG-E 285
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
NSL + ++ L+ V +L VD Y+ M G +P + +I
Sbjct: 286 NSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFKSGIDPSEDILKAII 334
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK-- 184
++R+ +Q A++ FE+++ +P ++Y +I FG + ++ +Y LK
Sbjct: 388 LVRDFCKQAKMKEAVQYFEEMQGAGC-RPDAAIYTCLITGFGNQ---KRMDTVYGLLKEM 443
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN-------- 236
N P+ + +NAL+K + ++ D V Y+ M G +P +Y ++
Sbjct: 444 KANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNY 503
Query: 237 --GLEAMEEVAFSGIIRQD 253
G+ A +E+ G D
Sbjct: 504 EMGVAAWDEMKLKGCCPDD 522
>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
Length = 495
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 76 QNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
++ K ++ +N I + +A+ + R + ++ SK +LL ++ L E +
Sbjct: 71 RDSKEIKEDKNTKIASRKAISIILRREATKSIIEKKKGSK--KLLPRTVLESLHERITAL 128
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195
A++VFE +R++ WYKP V +Y +I + G + L+ + E + +
Sbjct: 129 RWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNH-EV 187
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTVINGL 238
+ AL+ D E MK+ C+PD +Y +I
Sbjct: 188 YTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSF 231
>gi|357441367|ref|XP_003590961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480009|gb|AES61212.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 573
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 143 VFEDIRK---EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
V +DI K E P + Y ++ +G LY + +EN P+I +N L
Sbjct: 338 VVDDILKIMNETSISPTLVTYNILLNSLCKSGFLDRSISLYIKMVSENC-SPDIVTYNTL 396
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259
L L D + + C P +Y VINGL M + + A + YG
Sbjct: 397 LNALCKEGFIDESIQLLHSLSGTNCSPGLVTYNIVINGLARMRSI-------KSAKEMYG 449
Query: 260 DL 261
++
Sbjct: 450 EM 451
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 126 AVLRELLRQNHCLL--ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
A+L EL+ + HC AL+V ED+ +E P +++Y ++ G ++ ++ L
Sbjct: 254 ALLVELVCK-HCGASRALEVLEDMAREGCC-PDINMYNSLVNFSSKQGNYKDTALVISNL 311
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + ++P + +N L+ L D+V D ++M P +Y ++N L
Sbjct: 312 LS-HGMQPNVVTYNILIHSLSLHGYSDVVDDILKIMNETSISPTLVTYNILLNSL 365
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 97 HLKRAHLHSNPLD-----HVFNSKFRRLLKFDMIA-VLRELLRQNHCLLALKVFEDIRKE 150
H + L P+D +F +KF L + ++ VL+ + Q LALK F K+
Sbjct: 31 HQIMSLLLDGPVDMESRLDLFCNKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQ 90
Query: 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
+ Y + Y I V NG +V+ ++ + L + N+L+K + +
Sbjct: 91 KKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLM-NVSAANSLIKSFGSLGMVE 149
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVINGL---------EAMEEVAFSGIIRQDAFKY 257
++ + MK G EP +Y ++NGL E + EV +G I D Y
Sbjct: 150 ELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTY 205
>gi|302797108|ref|XP_002980315.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
gi|300151931|gb|EFJ18575.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
Length = 2030
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKV 143
G + S E ++ + LKR H + + VL+++ ++ L+LK+
Sbjct: 1465 GASWSSEMVEKLDRLKRGITHPH----------------QVCVVLKKI--KHDASLSLKL 1506
Query: 144 FEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203
F + +K + Y+ MI + G +G + E L+ ++ E L + N +++C
Sbjct: 1507 FTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQ-ELGLRLDTFAVNNMIRCY 1565
Query: 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+D Y M GC PD ++ +I+
Sbjct: 1566 TRVNRIQEALDLYRKMPYFGCHPDNCTFGLLID 1598
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNG-------LFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ KP + Y I G + +E L ++P I+ + L+K
Sbjct: 754 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL--------GVKPNIKTYTTLIK 805
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA----FSGII 250
L + + CYE MK +G +PD++ Y ++ L + +A +SG++
Sbjct: 806 GWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 858
>gi|388500892|gb|AFK38512.1| unknown [Medicago truncatula]
Length = 249
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSI----------EAIQAVQHLKRAHLHSNPLDHVFNSKF 116
L+++M+ KP +R + I EA++ + +K +H NP+ VFNS
Sbjct: 74 LILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPV--VFNSLI 131
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
+ L + E AL + E+ KP V Y+ ++ + ++GL +
Sbjct: 132 KGYLDITDTDGVEE---------ALTLMEEFG----IKPDVVTYSTIMNAWSSSGLMDNC 178
Query: 177 E-ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
E I +K E +EP+IQ ++ L K V D M G + + + T+I
Sbjct: 179 EEIFDDMVKAE--IEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTII 236
Query: 236 NGL 238
+G+
Sbjct: 237 SGV 239
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 163 MIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221
+I FG + + + +L F EN L P++ + L+K L+ + D V YE M T
Sbjct: 585 LINAFGEDRRVVEAFSVLQFM--KENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642
Query: 222 VGCEPDRSSYRTVINGLEAMEEV 244
GC PDR + + + L M+ +
Sbjct: 643 SGCAPDRKARAMLRSALRYMKHM 665
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 142 KVFEDIRKEQ--WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
K F +R+ Q +P Y MI FG H + ++ E +EP++ +N L
Sbjct: 387 KAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMR-EEEIEPDVVTWNTL 445
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN---------GLEAM 241
+ D ++ +E M+ C P ++Y +IN G+EAM
Sbjct: 446 IDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAM 496
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L LLR A+K FE + K + P V Y +I+ + + YFY +
Sbjct: 284 MLEGLLRSKKRSDAIKFFE-VMKAKGPSPDVRSYTILIRDLCKQTKMKEA-VGYFYEMVD 341
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ P+ + L+ K D+V + + MK GC PD +Y +I
Sbjct: 342 SGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALI 390
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++ KE + +YA MI+ FG G L F + P++ +NAL
Sbjct: 460 ANELFQEL-KENCGRSSARVYAVMIKHFGNCGRLSDAVDL-FCEXEKLGCSPDVYTYNAL 517
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ ++ + D M+ GC PD S+ ++NGL
Sbjct: 518 MSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGL 556
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+R L+ A VF+ + E +KP + Y ++ +F+ + L ++
Sbjct: 74 MRALIDSKKPYQAHSVFKHLMDEG-HKPSLVTYTILLTALTNQRMFESIPSLLAEVELA- 131
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P+ FNAL+ V K ++ + MK GC P S++ T+I G
Sbjct: 132 GVRPDSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKG 181
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F+ + K + KP+++ Y ++Q + T G + L L N +
Sbjct: 314 LCKNGRCTEARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIH 371
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250
P F+ L+ D + + M+ G PD +Y TVI L V
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV------ 425
Query: 251 RQDAFKYY 258
+DA +Y+
Sbjct: 426 -EDAMRYF 432
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+R L+ A VF+ + E +KP + Y ++ +F+ + L ++
Sbjct: 74 MRALIDSKKPYQAHSVFKHLMDEG-HKPSLVTYTILLTALTNQRMFESIPSLLAEVELA- 131
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P+ FNAL+ V K ++ + MK GC P S++ T+I G
Sbjct: 132 GVRPDSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKG 181
>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62470, mitochondrial; Flags: Precursor
gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E+ + P Y +I++ + +H +Y + +N +EP I FN ++K +
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM-IQNEIEPSIHTFNMIMKSYFMARN 488
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ +E M G PD +SY +I GL
Sbjct: 489 YEMGRAVWEEMIKKGICPDDNSYTVLIRGL 518
>gi|440792915|gb|ELR14122.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 593
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K+++++R+ ++ V +Y +I FG G ++ +Y ++ E + P Q + AL++
Sbjct: 385 KIYDELRRGASFQFNVQVYTALINGFGRAGDLARMQKVYDRMRQE-EIRPTAQTYTALIE 443
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
VVD ++ +K PD + ++ GL A
Sbjct: 444 AFTKHGSPYGVVDMWKQVKHQTFLPDSRLFHALVKGLPA 482
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNA 198
AL V + +R + V L + +I FG + + + +L F EN P++ +
Sbjct: 568 ALNVVKAMRADGLEASTVVLNS-LINAFGEDRRVVEAFSVLQFM--KENDFRPDVITYTT 624
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L+K L+ + D V YE M T GC PDR + + + L M+
Sbjct: 625 LMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHT 670
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++L L C A + F D + KP V++Y +I + T G + L L
Sbjct: 313 SLLNYLCNNGRCREA-RFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDL-LNLMV 370
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
EN L P+ FN + + D + + MK G PD ++ +I+ L
Sbjct: 371 ENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDAL 423
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L + H ALK+ +++ E+ KP + LY +I+ G + + L+ L +
Sbjct: 452 LLDGFCKHGHLDEALKLLKEMH-ERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSAD 510
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ P+I +N ++K L+ L D + + M+ G PD SY +I G
Sbjct: 511 -GIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGF 561
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+R L+ A VF+ + E +KP + Y ++ +F+ + L ++
Sbjct: 74 MRALIDSKKPYQAHSVFKHLMDEG-HKPSLVTYTILLTALTNQRMFESIPSLLAEVELA- 131
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ P+ FNAL+ V K ++ + MK GC P S++ T+I G
Sbjct: 132 GVRPDSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKG 181
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+I L + R N A K+F ++ KE P Y ++ G G + V L +
Sbjct: 537 LIDTLYKAGRGNE---AWKIFHEL-KEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ NS P + +N +L CL + + M GC PD SSY T ++GL
Sbjct: 593 NS-NSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGL 646
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V YA +I + +G+++ E L+ + + P+I +N +L +
Sbjct: 433 KPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCF-PDIITYNTVLSAFSKAGMMSKAE 491
Query: 214 DCYELM--KTVGCEPDRSSYRTVING 237
Y+ + KT C PD +YR +I+G
Sbjct: 492 GVYQQLKNKTSYCSPDAITYRILIDG 517
>gi|302759174|ref|XP_002963010.1| hypothetical protein SELMODRAFT_78269 [Selaginella moellendorffii]
gi|300169871|gb|EFJ36473.1| hypothetical protein SELMODRAFT_78269 [Selaginella moellendorffii]
Length = 265
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
L+LK+F + +K + Y+ MI + G +G + E L+ ++ E L + N
Sbjct: 19 LSLKLFTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQ-ELGLRLDTFAVNN 77
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+++C +D Y M GC PD ++ +I+
Sbjct: 78 MIRCYTRVNRIQEALDLYRKMPYFGCHPDNCTFGLLID 115
>gi|186478661|ref|NP_564088.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|8778424|gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana]
gi|332191742|gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 725
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
+ D IA++ +L R+ + LKV E + E+ + +S Y+ +I + + VE +
Sbjct: 349 RVDWIALINQL-REGNTHAYLKVAEGVLDEKSFNASISDYSKLIHIHAKENHIEDVERIL 407
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ ++N + P+I AL+ + + +E +K+ G PD Y +I G
Sbjct: 408 KKM-SQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILG 463
>gi|224114227|ref|XP_002316702.1| predicted protein [Populus trichocarpa]
gi|222859767|gb|EEE97314.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D +++ +P + + ++ F G F E ++ +K +N +EP+I+ +NA L L
Sbjct: 189 DEMEKKGLEPDLITFNTLLHGFYAKGRFVDGERIWEQMKEKN-VEPDIRSYNAKLLGLTL 247
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
K + VV E MK+ G + D SY T+I G
Sbjct: 248 EKRMEDVVKVVEEMKSEGIQLDTFSYSTLIRGF 280
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF+++ + + + VS A ++ + F E L+ L E +EP++ +N +
Sbjct: 113 ARKVFDEMFERKCARTVVSFNA-LLGACVNSKKFDEAEGLFKGLSKELEIEPDLVSYNTV 171
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
LK D + M+ G EPD ++ T+++G A
Sbjct: 172 LKAFCEMGSMDSAATLLDEMEKKGLEPDLITFNTLLHGFYA 212
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 136 HCLL-------ALKVFEDIR-KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
HCL+ A+++F +R K +P V + +I ++ G + + ++ + E
Sbjct: 178 HCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAE- 236
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
++P I +NAL+ + ++ MK G PD SY ++I+
Sbjct: 237 GIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIS 285
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNG-------LFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ KP + Y I G + +E L ++P I+ + L+K
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL--------GVKPNIKTYTTLIK 807
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA----FSGII 250
L + + CYE MK +G +PD++ Y ++ L + +A +SG++
Sbjct: 808 GWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 860
>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Vitis vinifera]
Length = 450
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 99 KRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS 158
KR + N L VF +FR LLK R A + F ++K + + V
Sbjct: 185 KRVEMADNKLFKVFRGRFRILLK--------GFFRAGQLKEAWEFFLQMKKRKC-EIDVV 235
Query: 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYEL 218
Y ++ FG G + + ++ + E L P + +NA ++ L + + +E
Sbjct: 236 TYTTVVHGFGVAGEVRKAQRVFNEMIGEGVL-PSVATYNAFIQVLCKKDNVENAISVFEE 294
Query: 219 MKTVGCEPDRSSYRTVINGL 238
M G P+ ++Y VI GL
Sbjct: 295 MLRKGYMPNSTTYNVVIRGL 314
>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Glycine max]
Length = 768
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 86 NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLK-----------FDMIAVL--RELL 132
NL+++ + VQHL HL +P ++NS LL+ F ++ + + +
Sbjct: 124 NLALQLLDYVQHL---HLDPSP---IYNSLLVALLEKNQLTLALSIFFKLLGAVDSKSIT 177
Query: 133 RQNHCLLALK----------VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
N L+AL+ VF+ +R+++ + Y I FG G L+
Sbjct: 178 ACNQLLVALRKADMRVEFEQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLATCFALFKE 237
Query: 183 LKTENS--LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+K N + P++ +N+L+ L D + YE + +PDR +Y +I
Sbjct: 238 MKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLI 292
>gi|302797110|ref|XP_002980316.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
gi|300151932|gb|EFJ18576.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
Length = 1527
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
L+LK+F + +K + Y+ MI + G +G + E L+ ++ E L + N
Sbjct: 995 LSLKLFTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQ-ELGLRLDTFAVNN 1053
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+++C +D Y M GC PD ++ +I+
Sbjct: 1054 MIRCYTRVNRIQEALDLYSKMPYFGCHPDNCTFGLLID 1091
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ + L A K +++RK Q P V Y +I G +++ ++
Sbjct: 359 SIIHAFCKSGKLLEAQKTLQEMRK-QRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQE 417
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
+ P++ ++ ++ G D++V+ +L M GC PD +Y T+I+GL
Sbjct: 418 SGDVLPDVVTYSTVIN---GLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 470
>gi|193848521|gb|ACF22711.1| PPR protein [Brachypodium distachyon]
Length = 292
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNA 198
AL V + +R + V L + ++ FG + + + +L F EN L P++ +
Sbjct: 187 ALNVVKAMRADGLEASTVVLNS-LMNAFGEDRRVVEAFSVLQFM--KENDLRPDVITYTT 243
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
L+K L+ + D V YE M T GC PDR + + + L M+
Sbjct: 244 LMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 287
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F+ + K + KP ++ Y+ ++ + G + L F L ++ ++
Sbjct: 313 LCKNGRCTEARKIFDSMVK-RGLKPDITTYSSLLHGYAIEGALVEMHGL-FDLMVQSDMQ 370
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
P+ FN L+ D + + M+ G +P+ +Y T+ING
Sbjct: 371 PDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLING 417
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E P V Y ++ G G Q + F + P FN LL CL
Sbjct: 571 EEMNLAPTVVTYNILLAGLGKEGQIQKA-VQLFESMNGHGCSPNTITFNTLLDCLCKNDE 629
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
DL + + M T+ C PD ++ T+I+G
Sbjct: 630 VDLALKMFYKMTTMNCRPDVLTFNTIIHGF 659
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNG-------LFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ KP + Y I G + +E L ++P I+ + L+K
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL--------GVKPNIKTYTTLIK 804
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA----FSGII 250
L + + CYE MK +G +PD++ Y ++ L + +A +SG++
Sbjct: 805 GWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 857
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNG-------LFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ KP + Y I G + +E L ++P I+ + L+K
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL--------GVKPNIKTYTTLIK 804
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA----FSGII 250
L + + CYE MK +G +PD++ Y ++ L + +A +SG++
Sbjct: 805 GWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 857
>gi|357450593|ref|XP_003595573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484621|gb|AES65824.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 621
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F D++K+ P V+ Y +I VFG L H+E F E L P I +N L+
Sbjct: 215 LFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEAT-FKEMNELPLAPNISTYNYLIGG 273
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEAMEEV 244
+ + + ++++ + EP+ +Y +I G LE ME++
Sbjct: 274 YISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKI 321
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A + LL+ ALKVF ++ KE+ P V Y+ +I F G + F L
Sbjct: 330 AFIHGLLKNGRVQEALKVFSEL-KEKGLVPDVFTYSSLISGFCKQGEVEKA----FELHD 384
Query: 186 ENSLE---PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
E L+ P I +NAL+ L ++ M G EPD +Y T+I+G E
Sbjct: 385 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 444
Query: 243 EVA 245
VA
Sbjct: 445 NVA 447
>gi|359496216|ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial [Vitis vinifera]
Length = 383
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 21/163 (12%)
Query: 79 KPLQRGRNLS--IEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
K + R RNL ++ + L R + ++ RRL + E+L +
Sbjct: 31 KDIYRERNLKRLVQKFKKSSELDRFRTKTG----IYEETVRRLASAKRFRWIEEILEEQ- 85
Query: 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196
K ++DI +E + +SLY G +G+F H F + E + F
Sbjct: 86 -----KKYKDISREGFAVRLISLY-------GKSGMFDHA-FKVFDEMPDQKCERSVLSF 132
Query: 197 NALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
NALL V K D V + EL + EPD SY VI GL
Sbjct: 133 NALLGACVHSKKFDKVEGFFSELPSKLSVEPDLVSYNIVIKGL 175
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF+++ ++ + +S A ++ + F VE + L ++ S+EP++ +N +
Sbjct: 113 AFKVFDEMPDQKCERSVLSFNA-LLGACVHSKKFDKVEGFFSELPSKLSVEPDLVSYNIV 171
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+K L D V + M+ EPD ++ T++NG
Sbjct: 172 IKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNG 209
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ + L A K +++RK Q P V Y +I G +++ ++
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQEMRK-QRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE 295
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGL 238
+ P++ ++ ++ G D++V+ +L M GC PD +Y T+I+GL
Sbjct: 296 SGDVLPDVVTYSTVIN---GLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 348
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +FE++++ P V Y ++I+ G G + LY + T+ L P++ N L
Sbjct: 287 ALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTD-GLTPDVVFLNNL 344
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L + + + + M T C P SY TVI L
Sbjct: 345 MNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKAL 383
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++ KE + +YA MI+ FG G L+ +K + S P++ +NAL
Sbjct: 463 ANELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS-GPDVYAYNAL 520
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +V + + M+ GC D +S+ ++NG
Sbjct: 521 MSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGF 559
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K +N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKN-IEPNVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKY 285
>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++L+ D + VL + LLA F RK +V LY ++VF E
Sbjct: 140 KILEQDAVIVLNNMTNPETALLAFGFF---RKRLKPSREVILYNVTLKVFRKCRNLDRAE 196
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ + E ++P+ F+ ++ C L + V+ +E M GC PD +Y +I+
Sbjct: 197 KLFDEM-LERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDA 255
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
A +FE+ + QV +Y+ +I FG G V+ Y ++ + L P + +N
Sbjct: 534 AYMLFEEAKSNGIELNQV-IYSSLIDGFGKVG---RVDEAYLVMEEMMQKGLTPNVYTWN 589
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LL LV + + + C++ MK + C P++ +Y +INGL
Sbjct: 590 CLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGL 630
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
+F AV+ + AL V+E + + KP V LY+ MI F +G E L+
Sbjct: 336 EFVFSAVITGFCKSGEVDRALMVWETMVAAR-VKPNVVLYSAMIDGFARSGRMTEAEKLF 394
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + P I ++++++ + +E M VGC P SY +I+GL
Sbjct: 395 EEMVDAKCI-PNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGL 451
>gi|302772122|ref|XP_002969479.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
gi|300162955|gb|EFJ29567.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
Length = 489
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+AL+ F + ++K Y+ MI+V GT G + L+ ++ E L+P++ N
Sbjct: 15 VALEFFTWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQGRKLFDEMR-EKGLKPDLVTVNN 73
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
++KC D +D + G EPD +Y +I+ L V+
Sbjct: 74 MIKCYGCANRVDDAMDLFREFPDFGFEPDVCTYALLIDLLGKAGRVS 120
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
++P V YA +I + G G V L+ L++ L+P+ FN+++ +K L
Sbjct: 99 FEPDVCTYALLIDLLGKAGRVSEVRKLFLELQSRK-LKPDEYVFNSMIANFSKWKDLGLA 157
Query: 213 VDCYELMKTVGCEPDRSSYRTVIN 236
+ + MK G P +Y V+N
Sbjct: 158 DEALDYMKVCGIRPSTVTYAIVLN 181
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F+ + K + KP+++ Y ++Q + T G + L L N +
Sbjct: 314 LCKNGRCTEARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIH 371
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250
P F+ L+ D + + M+ G PD +Y TVI L V
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV------ 425
Query: 251 RQDAFKYY 258
+DA +Y+
Sbjct: 426 -EDAMRYF 432
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++L+ D + VL + LLA F RK +V LY ++VF E
Sbjct: 140 KILEQDAVIVLNNMTNPETALLAFGFF---RKRLKPSREVILYNVTLKVFRKCRNLDXAE 196
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L+ + E ++P+ F+ ++ C L + V+ +E M GC PD +Y +I+
Sbjct: 197 KLFDEM-LERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDA 255
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 136 HCLL-------ALKVFEDIR-KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
HCL+ A+++F +R K +P V + +I ++ G + + ++ + E
Sbjct: 83 HCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAE- 141
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
++P I +NAL+ + ++ MK G PD SY ++I+
Sbjct: 142 GIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIS 190
>gi|242053623|ref|XP_002455957.1| hypothetical protein SORBIDRAFT_03g027940 [Sorghum bicolor]
gi|241927932|gb|EES01077.1| hypothetical protein SORBIDRAFT_03g027940 [Sorghum bicolor]
Length = 369
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
++ P + Y I NG + V+ L ++ E L P++ +NAL++ +
Sbjct: 179 QDHGIAPDTAAYNARITYKSANGTVEEVKELIRAMREEAGLRPDLVSYNALMRAMARHNR 238
Query: 209 RDLVVDCY---ELMKTVGCEPDRSSYRTVINGL------EAMEEVAFSGIIRQ 252
D V+ Y E + PD ++Y V+ L E+V ++G+ R+
Sbjct: 239 VDEAVEVYRRLEAGEEADVVPDCATYTCVVGALCGAGRWSEAEDVFYAGVKRR 291
>gi|87241379|gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 514
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F D++K+ P V+ Y +I VFG L H+E F E L P I +N L+
Sbjct: 215 LFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEAT-FKEMNELPLAPNISTYNYLIGG 273
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEAMEEV 244
+ + + ++++ + EP+ +Y +I G LE ME++
Sbjct: 274 YISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKI 321
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 156 QVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFNALLKCLVGFKLRDLVV 213
V +Y+ +I FG G ++ Y L+ + L P +N LL LV + D
Sbjct: 691 NVVIYSSLIDGFGKVG---RIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQ 747
Query: 214 DCYELMKTVGCEPDRSSYRTVINGL 238
C++ MK + C P+ +Y +INGL
Sbjct: 748 VCFQNMKNLKCSPNAMTYSIMINGL 772
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE + P + Y +I G GL ++ +K + +P++ +NAL+ C F+
Sbjct: 83 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC-DPDVITYNALINCFCKFER 141
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261
+ MK G +P+ +Y T I+ G++ Q+A K++ D+
Sbjct: 142 MPKAFEFLHEMKANGLKPNVVTYSTFIDAF------CKEGML-QEAIKFFVDM 187
>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Cucumis sativus]
Length = 572
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 153 YKPQVSLYADMIQVFG-TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+ P + +I+ G N + V+I F EN P++ +NA++ + D
Sbjct: 313 FSPDCLTHTYLIECLGRANQIDDAVKI--FDKMDENGCTPDVDAYNAMISNFICIGDFDQ 370
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
+ YE M + CEPD ++Y +I G ++VA
Sbjct: 371 CLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVA 404
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ L H A VF ++ + + P V Y +I + G + + IL+F+
Sbjct: 510 SIIHAHLMAGHLRKARAVFLEMLSKGIF-PSVVTYTVLIHSYAVRGRLK-LAILHFFEMH 567
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
E + P + +NAL+ L + D + M+ G P++ +Y +IN
Sbjct: 568 EKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILIN 618
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V + +R + V L + +I FG + + ++K EN L P++ + L
Sbjct: 423 ALNVVKAMRADGLEASTVVLNS-LINAFGEDRRIAEAFSVLQFMK-ENGLRPDVITYTTL 480
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
+K L+ + + V YE M T GC PDR + + + L M+
Sbjct: 481 MKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMK 523
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D K+ P V Y ++ G G Q I F P FN LL C
Sbjct: 566 DRMKDMKLSPTVVTYNTLLSGLGKEGRVQKA-IELFESMIXKKCSPNTISFNTLLDCFCK 624
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L + + M + C+PD +Y TVI GL
Sbjct: 625 NDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++FE++ + KP +++ +I +G G + L+ + E + P+++ + L
Sbjct: 912 AMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE-GIRPDLKSYTIL 969
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL---EAMEE 243
+ CL D + + +K+ G +PD +Y +INGL + MEE
Sbjct: 970 VDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEE 1016
>gi|357124808|ref|XP_003564089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Brachypodium distachyon]
Length = 502
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 110 HVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT 169
+V + F RL + D + +R+N C +P YA ++
Sbjct: 266 NVIINGFCRLGQVDKARTIFGFMRKNEC----------------EPNAFNYATLMNGHSR 309
Query: 170 NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS 229
G +++ +++ +K+ +EP+ + AL+ CL D +D M+ GC+ D
Sbjct: 310 KGELENLRMVFEEMKSAG-VEPDAVSYTALIGCLCRHGSVDEGIDLVREMREKGCKADVV 368
Query: 230 SYRTVINGL 238
+Y +I GL
Sbjct: 369 TYNLLIEGL 377
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+D+ P +Y +I F G F L +K + + P ++ +NAL
Sbjct: 635 ALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK-MVRPNVETYNAL 693
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
KCL + ++ + M CEP++ + ++ L +E+
Sbjct: 694 FKCLKEKNQAETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELV 739
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK---TENSLEPEIQGF 196
ALKVF+ + KE P Y+ +I G + F LK E +P + +
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEA----FGLKDQMGEKGCQPSTRTY 304
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+K L L D + ++ M GC+P+ +Y +I+GL
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGL 346
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V Y +I + G + + IL+F+ E + P + +NAL+ L + D +
Sbjct: 550 PSVVTYTVLIHSYAVRGRLK-LAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYN 608
Query: 215 CYELMKTVGCEPDRSSYRTVIN 236
+ M+ G P++ +Y +IN
Sbjct: 609 FFAEMQAKGISPNKYTYTILIN 630
>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 376
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+P +NAL+K L+G RD V + M T C P+ ++Y +I+GL
Sbjct: 161 KPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSILIDGL 209
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++ L + C A+++ +++ +E+ P + Y+ ++ F NG++ + + +
Sbjct: 357 LMHGLCKLGRCGSAVRMLDEM-EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAK 415
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
QG+N ++ L D + + MK+ GC+PD +Y T+I
Sbjct: 416 -GFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDC---YELMKTVGCEPDRSSYRTVING 237
TE +EP++ +++L+ G+ LR VV+ ++ M T GC+PD SY +ING
Sbjct: 335 TEMGVEPDVVTYSSLM---YGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 113 NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
N L + ++ L +Q + A ++F + + + KP + +Y +I +G
Sbjct: 442 NGNLPNLFTYSIL--LDGFCKQGYFGKAFRLFRAM-QSTYSKPNLVMYNILIDAMCKSGN 498
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232
+ L+ L + L+P Q + ++ L L D ++ + M+ GC PD SY
Sbjct: 499 LRDARKLFSELFVK-GLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYN 557
Query: 233 TVINGL 238
+I G
Sbjct: 558 VIIRGF 563
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ L + C A K+F+ + K + KP+++ Y ++Q + T G + L L
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMV 366
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
N + P F+ L+ D + + M+ G PD +Y TVI L V
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV- 425
Query: 246 FSGIIRQDAFKYY 258
+DA +Y+
Sbjct: 426 ------EDAMRYF 432
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E P V Y +I +G G + V L+ +K + P+I +N L+ C F+
Sbjct: 316 REMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCV-PDIITYNGLINCYCKFEK 374
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + MK G +P+ +Y T+I+
Sbjct: 375 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 404
>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
Length = 485
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 35/133 (26%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYA-----------------------------------DMI 164
AL++FE +RK+ WY+P+ YA +I
Sbjct: 108 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGLFREMLSERLRPTADVYTALI 167
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
+G +GL +H +K +P+ F+ L+ C + DL+ + M +G
Sbjct: 168 GAYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCAKSRRFDLIPAVLDEMSYLGI 227
Query: 225 EPDRSSYRTVING 237
E + + +I+G
Sbjct: 228 ECNSVIHNAIIDG 240
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P + MI+ +G G++ + ++ Y+K + P FN +++C + +
Sbjct: 299 EPDTKTFNIMIRSYGKAGMYVKMMSIFRYMK-KRFFSPTAVTFNTVIECFGRAGDIEKME 357
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEA---MEEVAFSGIIRQ-----------------D 253
+ LMK G +P+ +Y +++NG +++VA G+IRQ
Sbjct: 358 YYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVA--GVIRQTENTNVVLDTPFFNCVIS 415
Query: 254 AFKYYGDLEFLEE 266
A+ GD++ +EE
Sbjct: 416 AYAKSGDIKIMEE 428
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKE---QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+LR L+ N AL E +E YKP + L+ M+ +F N ++ + L
Sbjct: 597 LLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEM-LRL 655
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY---ELMKTV---GCEPDRSSYRTVING 237
E+ L+P++ +N+L+ + +C+ E++K + G +PD SY TVI G
Sbjct: 656 IRESGLQPDLVTYNSLMD------MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKG 709
Query: 238 ----------LEAMEEVAFSGI 249
+ + E+ SGI
Sbjct: 710 FCRQGLMQEAIRTLSEMTISGI 731
>gi|293336637|ref|NP_001167760.1| hypothetical protein [Zea mays]
gi|223943823|gb|ACN25995.1| unknown [Zea mays]
gi|414877894|tpg|DAA55025.1| TPA: hypothetical protein ZEAMMB73_945476 [Zea mays]
Length = 536
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+++ LR AL++F+D+ Q P + I T G H ++ + +
Sbjct: 356 MIKAFLRGRRVADALQMFDDMLI-QGVLPNTGMITSFINPLCTFGP-PHAALMIYKKSRK 413
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ + LL+ L F +V+D +E M+ G +PD+ Y ++NGL
Sbjct: 414 AGCVISLKAYKLLLERLAKFGKSGIVLDIWEEMQECGYQPDKEIYEFIVNGL 465
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEPEIQGF 196
AL++ ED+ K KP S+Y +I+ F G F LK E ++++ +
Sbjct: 141 ALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFA----FKLKEEMVTSNVKLVSAVY 196
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ L+ L ++ V D M GC+PD +Y +ING
Sbjct: 197 STLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIING 237
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-EAMEE 243
E +P++ FN ++ L D +D E M GC PD SYR + +GL E M+
Sbjct: 255 VEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQL 314
Query: 244 VAFSGIIRQDAFKYY 258
+ I+ + FK Y
Sbjct: 315 KEATSILDEMIFKGY 329
>gi|356554511|ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 421
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP 191
L + + A+ +FE + + YKP Y I F +G + + ++ K L P
Sbjct: 151 LSSHDIVTAVSLFEIMESSESYKPDFHTYNIFISAFSKSGNVDAM-LAWYSAKKAARLGP 209
Query: 192 EIQGFNALLKCLVG---FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++Q F +L+ V FK+ D + +E M G P S +++NG+
Sbjct: 210 DLQMFESLISGCVNSRKFKIADRI---FEEMMISGIVPSASIIESMLNGI 256
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKE---QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+LR L+ N AL E +E YKP + L+ M+ +F N ++ + L
Sbjct: 597 LLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEM-LRL 655
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY---ELMKTV---GCEPDRSSYRTVING 237
E+ L+P++ +N+L+ + +C+ E++K + G +PD SY TVI G
Sbjct: 656 IRESGLQPDLVTYNSLMD------MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKG 709
Query: 238 ----------LEAMEEVAFSGI 249
+ + E+ SGI
Sbjct: 710 FCRQGLMQEAIRTLSEMTISGI 731
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V LY+ MI G E+L+ + E P I ++++++ +
Sbjct: 485 KPNVVLYSAMIDGLARCGKMTEAELLFREM-IEAKCVPNIMTYSSMVRGYFQIGDSSQAL 543
Query: 214 DCYELMKTVGCEPDRSSYRTVINGL 238
+E M +GC P+ +Y +INGL
Sbjct: 544 SFWEDMLRIGCTPNAVTYSVLINGL 568
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D + P V Y M+ + T G + L F L + + P+ FN L+K
Sbjct: 361 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLIKAYAN 419
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + + M+ G +PD +YRTVI L
Sbjct: 420 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 452
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE +P Y ++ G G + V L + T P + +N +L CL
Sbjct: 548 KEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEM-TRTIYPPNLITYNTVLDCLSKNGE 606
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL---EAMEEV 244
+ +D M GC PD SSY TV+ GL E +EE
Sbjct: 607 VNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEA 645
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K +N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGL 265
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA +AV KR +S ++LL ++ L + + ALKVFE +R+
Sbjct: 99 EATKAVIERKRGPNNS-----------KKLLPRTVLEALHDRITTLRWESALKVFELLRE 147
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILY--FYLKTENSLEPEIQGFNALLKCLVGFK 207
+ WY+P +Y +I + G + E Y F E E + + ALL
Sbjct: 148 QLWYRPYAGMYIKLIVMLGK---CKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSG 204
Query: 208 LRDLVVDCYELMK-TVGCEPDRSSYRTVI 235
L D MK + C+PD +Y +I
Sbjct: 205 LLDEAFSILNEMKNSPDCQPDVHTYSILI 233
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 46/183 (25%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA +A+ KR +S ++LL ++ L E + ALKVFE +R+
Sbjct: 99 EATKAIIEKKRGPTNS-----------KKLLPRTVLEALHERITALRWESALKVFELLRE 147
Query: 150 EQWYKPQVSLYADMI-----------------------------------QVFGTNGLFQ 174
+ WY+P +Y +I +G +GL
Sbjct: 148 QIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLD 207
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234
L +K +P++ ++ L+K V D M+++G P+ +Y T+
Sbjct: 208 KAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTL 267
Query: 235 ING 237
I+
Sbjct: 268 IDA 270
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 93 QAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQW 152
Q +Q K H D V S F L L +Q + AL++F ++ + +
Sbjct: 128 QKIQLFKDMHAQGCSPDLVTYSIF-----------LHGLSKQGYLDQALELFREM-QNNY 175
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
P + +Y +I +G + L+ L + L P+++ + +++ L L D
Sbjct: 176 LNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLL-PDVRSWTSIISGLCREGLLDEA 234
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGL 238
+ M+ GC PD SY ++ G
Sbjct: 235 YKAFRQMERDGCPPDCCSYNVIVRGF 260
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
KVFE++ + +P V +Y +I +G + + + TE LEP + +N L+
Sbjct: 185 KVFEEMSG-RGIEPDVVMYTALIDSLCRHGKVKKAARV-MDMMTERGLEPNVVTYNVLIN 242
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +D + M G +PD +Y T+I GL ++ E+
Sbjct: 243 SMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEM 285
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGL 265
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D + P V Y M+ + T G + L F L + + P+ FN L+K
Sbjct: 348 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLIKAYAN 406
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + + M+ G +PD +YRTVI L
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D + P V Y M+ + T G + L F L + + P+ FN L+K
Sbjct: 351 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLIKAYAN 409
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ D + + M+ G +PD +YRTVI L
Sbjct: 410 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 442
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGL 265
>gi|356566730|ref|XP_003551582.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Glycine max]
Length = 650
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KV D+ ++ P V + +I L+ + EN L P + +NAL
Sbjct: 423 ASKVLHDMLAGKFAAPDVVTFTTVISGMLDAARVDEALDLFHKVMPENGLRPSVVTYNAL 482
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
L+ L K + + M + G D ++Y V+ GL ++V
Sbjct: 483 LRGLFKLKRVSDALMAFNNMVSEGITADSTTYTVVVEGLCESDQV 527
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
Query: 51 PWHNTQKQQ---VTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQH----LKRAHL 103
PW Q V + + + RG+ R G EA +A + L+R
Sbjct: 10 PWPQRQPPSPCPVAGGAAPRHVALAARGKRRGAGAAGEEGVDEAAEAAELVRSVLRRTAG 69
Query: 104 HSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADM 163
L V + R + + EL R++ L L+VF ++K++WY +Y+ +
Sbjct: 70 GKERLVPVLDRHVRGVRTEHCFLLFEELGRRDAWLQCLEVFRWMQKQRWYVADNGIYSKL 129
Query: 164 IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
I V G G + L+ ++ + +P+ +N+L+
Sbjct: 130 ISVMGRKGQIRMAMWLFSQMRN-SGCKPDTSVYNSLI 165
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E P V Y +I +G G + V L+ +K + P+I +N L+ C F+
Sbjct: 257 REMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCV-PDIITYNGLINCYCKFEK 315
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + MK G +P+ +Y T+I+
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAF 345
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY 180
+F ++ ++QN ALK+F + K++ KP V Y +I F G E +
Sbjct: 555 EFTYSTIIDGYVKQNDLHNALKLFGQMVKQKC-KPNVVTYTSLINGFCRTGDSSRAEKTF 613
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
+++ + L+P + + L+ C +ELM C P+ ++ +INGL
Sbjct: 614 EEMRS-SGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTN 672
Query: 241 MEEVAFS 247
A S
Sbjct: 673 NLATAVS 679
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 161 ADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220
A ++ F +G + L F L ++P + G+NA++K F + + + C + MK
Sbjct: 489 ATLVDGFIRHGKLDEAKKL-FELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMK 547
Query: 221 TVGCEPDRSSYRTVING 237
PD +Y T+I+G
Sbjct: 548 DGDHSPDEFTYSTIIDG 564
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL VF+ +R+ +P + Y ++ F + VE L+ Y +T + P +Q +N L
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVL 155
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K K + + M G +PD SY TVIN L
Sbjct: 156 IKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDL 194
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V E + K + P + +IQ F NG I Y + P+I +N L
Sbjct: 340 ALNVLEMMPK-HGHTPNSRSFNPLIQGF-CNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397
Query: 200 LKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEVAFSG 248
L L K+ D VV +L + GC P SY TVI+GL E +EE+ + G
Sbjct: 398 LTALCKDGKVDDAVVILSQL-SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKG 456
Query: 249 I 249
+
Sbjct: 457 L 457
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLXEEMKGFGIKPNAITYSTLLPGL 265
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGL 265
>gi|125587689|gb|EAZ28353.1| hypothetical protein OsJ_12331 [Oryza sativa Japonica Group]
Length = 556
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 179 LYFYLKTENS-LEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L+ +KT + L P+I N+L++ LV G ++ D +V Y+ MK+ G EPD +YR +++
Sbjct: 32 LFAAMKTASPPLVPDICTHNSLIRALVVGARVADALV-VYDEMKSFGIEPDVFTYRAIVD 90
Query: 237 G 237
G
Sbjct: 91 G 91
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
+Q P +YA ++ F +G + L F L E L+P + G+N ++K +
Sbjct: 481 DQNIAPDAFVYATLVDGFIRHGNLDEAKKL-FQLIIEKGLDPGVVGYNVMIKGFSKSGMM 539
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVING 237
D + C + M+ PD ++ T+I+G
Sbjct: 540 DNAILCIDKMRRAHHVPDIFTFSTIIDG 567
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 91 AIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKE 150
AI + ++RAH HV + F ++ ++Q++ LK+F + K+
Sbjct: 542 AILCIDKMRRAH-------HVPDI-------FTFSTIIDGYVKQHNMNAVLKIFGLMVKQ 587
Query: 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
KP V Y +I + G + E L+ +++ + L+P + ++ L+
Sbjct: 588 NC-KPNVVTYTSLINGYCRKGETKMAEKLFSMMRS-HGLKPSVVTYSILIGSFCKEAKLG 645
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
V +ELM C P+ +++ ++NG + A S
Sbjct: 646 KAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVS 682
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K+F+ + K + + P + + ++ F G+F+ +++L +K + L +Q +N +
Sbjct: 262 AYKLFKKL-KMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMK-DRGLSVNVQMYNNI 319
Query: 200 LKCL--VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +GF ++ D + M CEPD +Y T+IN + EV
Sbjct: 320 IDARYKLGFDIK--AKDTLKEMSENCCEPDLVTYNTLINHFCSRGEV 364
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEPEIQGF 196
AL++ ED+ K KP S+Y +I+ F G F LK E ++++ +
Sbjct: 274 ALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFA----FKLKEEMVTSNVKLVSAVY 329
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ L+ L ++ V D M GC+PD +Y +ING
Sbjct: 330 STLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIING 370
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-EAMEEV 244
E +P++ FN ++ L D +D E M GC PD SYR + +GL E M+
Sbjct: 389 EKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLK 448
Query: 245 AFSGIIRQDAFKYY 258
+ I+ + FK Y
Sbjct: 449 EATSILDEMIFKGY 462
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 113 NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
N L + M+ L ++ + A ++F + + + KP +++Y +I G
Sbjct: 439 NGNLPDLFTYSML--LDGFCKEGYLGKAFRLFR-VMQSTYLKPDIAMYNILIDAMCKFGN 495
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232
+ L+ L + L P +Q + ++ L L D ++ + M+ GC PD SY
Sbjct: 496 LKDARKLFSELFVQ-GLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYN 554
Query: 233 TVINGL 238
+I G
Sbjct: 555 VIIRGF 560
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K +N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGL 265
>gi|242043100|ref|XP_002459421.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
gi|241922798|gb|EER95942.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
Length = 735
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL L H ALK+F+++ E +P +A +++ G+ + + ++ E
Sbjct: 244 VLGALAAAGHVEDALKLFDEM-SEGGVQPIPVTFAIVVRALAHAGMTDRLLEMIGRMRNE 302
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P++ + AL+K +V D + +E M+ G EPD +Y T++ G
Sbjct: 303 -VCRPDVFVYTALVKTMVRRGYMDGCIRVWEEMEKDGVEPDTMAYATMVGGF 353
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+FE ++ P YA +I ++ + G +E ++ + E+ EP I +L
Sbjct: 410 AVKIFEHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEM-MESGFEPNIIVLTSL 468
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ C K D VV + + +G PD
Sbjct: 469 VHCYGKAKRTDDVVKIFNQLMDLGISPD 496
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 119 LLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
+L+ D + +L ++ LLA++ F+ K + V LY +++F F+ E
Sbjct: 146 VLEPDAVFILNSMVNPYTALLAVEYFKQKVKSVRH---VILYNVTLKLFRKVKDFEGAEK 202
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
L+ + + P + F+ ++ C L V +E+M + GCEPD + ++I
Sbjct: 203 LFDEM-LHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMPSFGCEPDNNVCSSMI 258
>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1072
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL+ + H LA + F ++ + Y M+ + G F+ V+ L ++ +
Sbjct: 182 VLKRCFKVPH--LAFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEME-K 238
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
NS E +I+ ++ L+ KL + +E MKT GCEPD Y+ +++ L
Sbjct: 239 NSCEKDIKTWSILISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSL 290
>gi|297814175|ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320808|gb|EFH51230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 802
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK-----TENSLEPEIQGFN 197
VFE ++ +K Y I FG G L+ +K + +S P+I +N
Sbjct: 232 VFEKLKGMNRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVSGSSFAPDICTYN 291
Query: 198 ALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
+L+ CL G K +D ++ ++ +K G EPD S+YR +I G + DA
Sbjct: 292 SLIHVLCLFG-KAKDALI-VWDELKVSGHEPDNSTYRILIQGCCKSYRM-------DDAM 342
Query: 256 KYYGDLEF 263
+ +G++++
Sbjct: 343 RIFGEMQY 350
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+K+F++I P + + ++ VFG NG+ V ++ +K PE + FN L+
Sbjct: 439 MKIFDEINV-CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK-RAGFVPERETFNTLI 496
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + Y M G PD S+Y TV+ L
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ P V + +I F G E L+ + + S++P I +N+L+ GF +
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM-IQRSIDPNIVTYNSLIN---GFCMH 358
Query: 210 DLVVDC---YELMKTVGCEPDRSSYRTVINGL 238
D + + + LM + C PD +Y T+ING
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+K+F++I P + + ++ VFG NG+ V ++ +K PE + FN L+
Sbjct: 439 MKIFDEINV-CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK-RAGFVPERETFNTLI 496
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + Y M G PD S+Y TV+ L
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
>gi|414879222|tpg|DAA56353.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 471
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 82 QRGRNLSIEAIQAVQHLKR------AHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
+R + + E + V LKR A H L+ S RLL+ D++AVL ELLRQ+
Sbjct: 363 RRKKEMGKEGLMVVAQLKRLAALPPAGGHPR-LEQFMRSHVSRLLRTDLLAVLAELLRQD 421
Query: 136 HCLLALKV--FED 146
H L++KV ED
Sbjct: 422 HVSLSMKVCSLED 434
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 181 FYLKTENSLEPEIQGFNALLKCLVGFKLR---DLVVDCYELMKTVGCEPDRSSYRTVING 237
F TE +EP I +NAL+ G+ LR + +E+M GC PD SY +ING
Sbjct: 466 FETMTEKGVEPNIYTYNALMN---GYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILING 522
>gi|449458001|ref|XP_004146736.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial-like [Cucumis sativus]
Length = 920
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216
+ +Y +I+ + + LF V L F L + + P I N LL L+ ++ + Y
Sbjct: 146 IRVYDALIKAYVSVNLFDSVVDLLFRLGRKGFV-PHIFTCNYLLNRLIEHGKMNMALVVY 204
Query: 217 ELMKTVGCEPDRSSYRTVINGL 238
E +K GC+P+ +Y TVI GL
Sbjct: 205 EQLKRFGCQPNDYTYATVIKGL 226
>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
Length = 1420
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V I KE+ KP LY +I N +LY + E + P FN+L
Sbjct: 385 ALNVLS-IMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGE-GVTPTTITFNSL 442
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD---AFK 256
+ C V +D E MK +PD +Y T+ G+++ + RQD AF
Sbjct: 443 IDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQ-------RQDLEKAFV 495
Query: 257 YYGDLE 262
Y L+
Sbjct: 496 LYNQLQ 501
>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 376
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 126 AVLRELLRQNHCL-LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184
++L + L Q H + +AL+++ + + +KP V ++ +I + G QH +LYF +
Sbjct: 238 SLLMKGLCQGHKVEMALQLWNQVLSKG-FKPDVQMHNILIHGLCSVGKTQHALMLYFDMN 296
Query: 185 TENSLEPEIQGFNALLKCLVGF----KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
N P + N L++ GF +R+ +V ++++ G +PD SY + GL +
Sbjct: 297 HWNC-APNLVTHNTLME---GFYKDGDIRNALVIWARILRS-GLQPDIISYNITLKGLCS 351
Query: 241 MEEVAFSGIIRQDAF 255
++F+ + DA
Sbjct: 352 CNRISFAILFLHDAL 366
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSI----------EAIQAVQHLKRAHLHSNPLDHVFNSKF 116
L+++M+ KP +R + I EA++ + +K +H NP+ VFNS
Sbjct: 241 LILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPV--VFNSLI 298
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
+ L + E AL + E+ KP V Y+ ++ + ++GL +
Sbjct: 299 KGYLDITDTDGVEE---------ALTLMEEF----GIKPDVVTYSTIMNAWSSSGLMDNC 345
Query: 177 E-ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
E I +K E +EP+IQ ++ L K V D M G + + + T+I
Sbjct: 346 EEIFDDMVKAE--IEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTII 403
Query: 236 NG 237
+G
Sbjct: 404 SG 405
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L F TE +EP I +NAL+ +L + +E+M GC P SY +ING
Sbjct: 319 LVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGF 378
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+ +++R + KP Y+ ++ G I +F+ + P FN++
Sbjct: 468 AIKLLDEMRAKDL-KPDTITYSSLVGGLSREGKVDEA-IKFFHEFERMGIRPNAVTFNSI 525
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVAF 246
+ L + D +D M GC+P+ +SY +I GL E M + A
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVF----GTNGLFQHVEILYFYLKTENSLEPEIQG 195
AL V E + K + P + +IQ F G + +H+EI+ P+I
Sbjct: 330 ALNVLEMMPK-HGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIM-----VSRGCYPDIVT 383
Query: 196 FNALLKCLV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEV 244
+N LL L K+ D VV +L + GC P SY TVI+GL E +EE+
Sbjct: 384 YNILLTALCKDGKVDDAVVILSQL-SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 442
Query: 245 AFSGI 249
+ G+
Sbjct: 443 CYKGL 447
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ EL R++ L L+VF ++K++WY +Y+ +I V G G Q ++ + +
Sbjct: 102 LFEELGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKG--QTRMAMWLFSEMR 159
Query: 187 NS-LEPEIQGFNALLKCLVGF--KLRDLV--VDCYELMKTVG-CEPDRSSYRTV------ 234
NS P+ +NAL+ + K + L+ + +E MK + C+P+ +Y +
Sbjct: 160 NSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQ 219
Query: 235 ---INGLEAMEEVAFSGIIRQDAFKYYGDLE 262
+N + A+ + I+ D + Y G ++
Sbjct: 220 ARNVNQVNALFKDLDQSIVSPDIYTYNGVMD 250
>gi|125549949|gb|EAY95771.1| hypothetical protein OsI_17645 [Oryza sativa Indica Group]
Length = 240
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P++ Y +I+ FG G + V I++ ++ E L P+ +N+L+ L+ + DL
Sbjct: 145 PRMDTYVMLIKRFGRWGFLRPVFIVWKAME-EQGLSPDAFAYNSLIDALLQKGMVDLARK 203
Query: 215 CYELMKTVGCEPD-RSSYRTVINGLEAMEEVAFSGII 250
E M + G P R T I G E+ + A SG++
Sbjct: 204 YDEEMLSKGLSPKPRKELGTKIPGAESDSDNALSGVL 240
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 41/199 (20%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA++ + +K L +P +NS +L+ R+ A+ +F +
Sbjct: 189 EAVELFEEMK--ELGRSPNSWTYNS------------LLKAYAREGRYEKAMCLFVGMED 234
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E P + Y +I + G GLF E ++ ++ + P+ +N +L + R
Sbjct: 235 EGCI-PDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGC-TPDRVTYNTMLDAYSKWSRR 292
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAME-------------EVAFSGI 249
D + MK GC PD +Y +++ EAM+ V+FS +
Sbjct: 293 GRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSAL 352
Query: 250 IRQDAFKYYGDLEFLEEDE 268
I YG L + EE E
Sbjct: 353 INM-----YGRLGYFEEAE 366
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
T L P++ FN L+ L L + +E MK+ GC PD +Y T+I+ L
Sbjct: 387 TLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNL 440
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 39/230 (16%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIA 126
L ++M+ RG + PL N + ++ + +RA + FR L K++
Sbjct: 161 LFVQMQKRGYSPGPL--ACNTFLHVLEDAKEYRRAE-----------ALFRDLEKYECEP 207
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYK--------PQVSLYADMIQVFGTNGLFQHVEI 178
+ R ++ K E + E Y+ P + + ++ F GL++ E
Sbjct: 208 NIDTYNRM--IVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAE- 264
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING- 237
YF E +P+ +NAL++ ++ ++ M+ GC PD S+ +IN
Sbjct: 265 RYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAY 324
Query: 238 ------------LEAMEEVAFSGIIRQDA--FKYYGDLEFLEEDEEDIAA 273
++M+ FS ++ + Y +EE EE ++A
Sbjct: 325 GRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSA 374
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA +AV KR +S ++LL ++ L + + ALKVFE +R+
Sbjct: 44 EATKAVIERKRGPNNS-----------KKLLPRTVLEALHDRITTLRWESALKVFELLRE 92
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILY--FYLKTENSLEPEIQGFNALLKCLVGFK 207
+ WY+P +Y +I + G + E Y F E E + + ALL
Sbjct: 93 QLWYRPYAGMYIKLIVMLGK---CKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSG 149
Query: 208 LRDLVVDCYELMK-TVGCEPDRSSYRTVI 235
L D MK + C+PD +Y +I
Sbjct: 150 LLDEAFSILNEMKNSPDCQPDVHTYSILI 178
>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ EL + + L L+VF ++K++WY P +Y+ +I V G G Q ++ + + +
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKG--QTRMAMWLFSEMK 160
Query: 187 NS-LEPEIQGFNALL 200
NS P+ +NAL+
Sbjct: 161 NSGCRPDASVYNALI 175
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ L + C A K+F+ + K + KP+++ Y ++Q + T G + L L
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMV 366
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
N + P F+ L+ D + + M+ G PD +Y TVI L V
Sbjct: 367 RNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV- 425
Query: 246 FSGIIRQDAFKYY 258
+DA +Y+
Sbjct: 426 ------EDAMRYF 432
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F+ + K + KP+++ Y ++Q + T G + L L N +
Sbjct: 314 LCKNGRCTEARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIH 371
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250
P F+ L+ D + + M+ G PD +Y TVI L V
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV------ 425
Query: 251 RQDAFKYY 258
+DA +Y+
Sbjct: 426 -EDAMRYF 432
>gi|357131120|ref|XP_003567190.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Brachypodium distachyon]
Length = 463
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++R L +++ AL V + K +S + ++ F NG E ++ +K
Sbjct: 221 LIRALCQKHDLSAALNVITLMEKCGVLPDNIS-FNTLLNGFYQNGRMDDAEAVWEMMKGW 279
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEA 240
N LEP+ + +NA L+ LV + V E M+ G +PD SY +I G LE
Sbjct: 280 N-LEPDTKSYNAKLRGLVAEGRIEDAVAVVERMEKEGPKPDTVSYNELIRGYCSAGRLED 338
Query: 241 MEEVAFSGIIRQDAFKYYGDLEFL 264
+++ + G+++ + G E L
Sbjct: 339 AKKL-YDGLVKNECAPNRGTYETL 361
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F+ + K + KP+++ Y ++Q + T G + L L N +
Sbjct: 314 LCKNGRCTEARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIH 371
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250
P F+ L+ D + + M+ G PD +Y TVI L V
Sbjct: 372 PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV------ 425
Query: 251 RQDAFKYY 258
+DA +Y+
Sbjct: 426 -EDAMRYF 432
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 39/230 (16%)
Query: 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIA 126
L ++M+ RG + PL N + ++ + +RA + FR L K++
Sbjct: 161 LFVQMQKRGYSPGPL--ACNTFLHVLEDAKEYRRAE-----------ALFRDLEKYECEP 207
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYK--------PQVSLYADMIQVFGTNGLFQHVEI 178
+ R ++ K E + E Y+ P + + ++ F GL++ E
Sbjct: 208 NIDTYNRM--IVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAE- 264
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING- 237
YF E +P+ +NAL++ ++ ++ M+ GC PD S+ +IN
Sbjct: 265 RYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAY 324
Query: 238 ------------LEAMEEVAFSGIIRQDA--FKYYGDLEFLEEDEEDIAA 273
++M+ FS ++ + Y +EE EE ++A
Sbjct: 325 GRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSA 374
>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 506
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +D+ K Q KP + Y +I G F +K E+ LE + + ++ L
Sbjct: 154 ALSALQDM-KVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMK-ESGLELDSETYDGL 211
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
+ F++ D + +C + M+ GC PD +Y +I +E A G++++
Sbjct: 212 IGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILI------QEYAGGGLLQR 258
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL++L Q+H +AL F +++ +K Y M+ + G F + L +
Sbjct: 311 VLKQL--QDH-TVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQM-VR 366
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ +P + +N L+ + V+ + M+ GCEPDR +Y T+I+
Sbjct: 367 DGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLID 416
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 85 RNLSIEAIQAV-QHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKV 143
R S + IQ++ Q +K L +P D+ +N+ ++ ++ +HC AL++
Sbjct: 261 RGDSWDRIQSLFQEMK--DLEISPDDYTYNT------------MITACIQNSHCQEALRL 306
Query: 144 FEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203
F+++ KE P Y ++ V+G G+ + L ++ + P I +N L+
Sbjct: 307 FQEM-KEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAG-ISPNIVTYNELIAAY 364
Query: 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
L D + + + G PD +Y T+I+ E
Sbjct: 365 ARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAE 403
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
+VFE +R ++WY +S Y ++ + ++ L E+ L P F ALL
Sbjct: 19 QVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCL-LEDKLRPTTAIFTALLT 77
Query: 202 CLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTVING 237
++ +E M+ GC PD+ +Y +I G
Sbjct: 78 VFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKG 114
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F + + + +KP V Y MI + E+L +K E L P + L
Sbjct: 329 AFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMK-EQGLVPNTNTYTTL 387
Query: 200 L--KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EA--MEEVAFSG 248
+ C G R D LM + G P+ +Y ++NGL EA M E F
Sbjct: 388 IDGHCKAGNFER--AYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQN 445
Query: 249 IIRQDAFKY 257
++ D F Y
Sbjct: 446 GLKPDKFTY 454
>gi|300123079|emb|CBK24086.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
Y P+V + ++Q + + F E L F L E+ LEP + +N L+ +
Sbjct: 62 YSPKVVDFETLMQCYVKSKAFAEAEKL-FDLIREHGLEPTVWTYNILINGYNKSGSWERA 120
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253
+ Y++MK G PD + T+I+ L ++ + +I +D
Sbjct: 121 LQIYQIMKLAGVRPDGITCTTLIDLLLKTKQPQYVHVILKD 161
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
EQ +P +Y +I F + ++ +++ + +I +NA++K +
Sbjct: 549 EQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYR-DIVAYNAMIKGYCKSGMM 607
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVING 237
+ V C M+ VGC PD +Y T+I+G
Sbjct: 608 NEAVMCMSSMRKVGCIPDEFTYTTLIDG 635
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+D+ P +Y +I F G F L +K + + P ++ +NAL
Sbjct: 635 ALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK-MVRPNVETYNAL 693
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
KCL + ++ + M CEP++ + ++ L +E+
Sbjct: 694 FKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELV 739
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+L F E P++ FN L++ L D + ++ M GC PD SY T+ING
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLING 258
Query: 238 LEAMEEVA 245
+ E++
Sbjct: 259 FCRVNEIS 266
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ EL + + L L+VF ++K++WY P +Y+ +I V G G Q ++ + + +
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKG--QTRMAMWLFSEMK 160
Query: 187 NS-LEPEIQGFNALL 200
NS P+ +NAL+
Sbjct: 161 NSGCRPDASVYNALI 175
>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
Length = 815
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+D V NS R + + ++REL R+ L + VF+ ++ ++ Y + +Y MI++
Sbjct: 94 VDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLH 153
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ L+F ++ + S +P+ + ++AL+ ++ + M P
Sbjct: 154 ARHNWVDQARGLFFEMQ-KWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPS 212
Query: 228 RSSYRTVING 237
RS+Y +IN
Sbjct: 213 RSTYNNLINA 222
>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
Length = 766
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+D+ P +Y +I F G F L +K + + P ++ +NAL
Sbjct: 635 ALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK-MVRPNVETYNAL 693
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
KCL + ++ + M CEP++ + ++ L +E+
Sbjct: 694 FKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELV 739
>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+D+ P +Y +I F G F L +K + + P ++ +NAL
Sbjct: 635 ALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK-MVRPNVETYNAL 693
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
KCL + ++ + M CEP++ + ++ L +E+
Sbjct: 694 FKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELV 739
>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+D V NS R + + ++REL R+ L + VF+ ++ ++ Y + +Y MI++
Sbjct: 94 VDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLH 153
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ L+F ++ + S +P+ + ++AL+ ++ + M P
Sbjct: 154 ARHNWVDQARGLFFEMQ-KWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPS 212
Query: 228 RSSYRTVING 237
RS+Y +IN
Sbjct: 213 RSTYNNLINA 222
>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 810
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+D V NS R + + ++REL R+ L + VF+ ++ ++ Y + +Y MI++
Sbjct: 94 VDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLH 153
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ L+F ++ + S +P+ + ++AL+ ++ + M P
Sbjct: 154 ARHNWVDQARGLFFEMQ-KWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPS 212
Query: 228 RSSYRTVING 237
RS+Y +IN
Sbjct: 213 RSTYNNLINA 222
>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Brachypodium distachyon]
Length = 862
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P + Y + VF GLFQ E ++ + ++ F+AL++ D V
Sbjct: 487 PTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVK 546
Query: 215 CYELMKTVGCEPDRSSYRTVING 237
Y M+ PD S V+N
Sbjct: 547 AYMEMRKSRFNPDERSLEGVLNA 569
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 116 FRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
F +L+K +++ A++ H AL +F ++ + P + ++ G+
Sbjct: 322 FEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGM 381
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232
+ + ++ + S++P +Q + ++ L G R + Y+L+K + EPD +
Sbjct: 382 VEEAKEFFYLMVNAYSIKPTVQHYTCVIDVL-GHTGR--FEEAYDLIKGMSIEPDSGIWG 438
Query: 233 TVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAAY 274
++NG + + V + Q + +E + ED Y
Sbjct: 439 ALLNGCKIHKNVELGELALQ---------KLIELEPEDAGNY 471
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + +I FG + + Y+K EN ++P++ + L+K L+ V
Sbjct: 618 KPSLLALNSLINAFGEDRRDAEAFAVLQYMK-ENGVKPDVVTYTTLMKALIRVDKFQKVP 676
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
YE M GC+PDR + + + L M++
Sbjct: 677 GVYEEMIMSGCKPDRKARSMLRSALRYMKQT 707
>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2453; Flags: Precursor
gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 563
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ EL + + L L+VF ++K++WY P +Y+ +I V G G Q ++ + + +
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKG--QTRMAMWLFSEMK 160
Query: 187 NS-LEPEIQGFNALL 200
NS P+ +NAL+
Sbjct: 161 NSGCRPDASVYNALI 175
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+L F E P++ FN L++ L D + ++ M GC PD SY T+ING
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLING 258
Query: 238 LEAMEEVA 245
+ E++
Sbjct: 259 FCRVNEIS 266
>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
V+ L R+ + A ++ ++ K + P Y+ +I+ G+ I F + E
Sbjct: 417 VITSLCRKGNTYPAFQLLYEMTK-YGFTPDSFTYSSLIRGLCMEGMLNEA-IEIFSVMEE 474
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
N+ +P+ + +N+L+ + DL +D +E+M G P+ ++Y ++ G+
Sbjct: 475 NN-KPDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGI 525
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L R+ +L++++ +DI K Y+ L +I +G GL ++ + ++ + +
Sbjct: 157 LYRKGPVVLSVELLKDI-KASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFL-GIS 214
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P + +NA++ LV DL ++ M C+PDR +Y +I+G+
Sbjct: 215 PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 111 VFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
VF + LK D++ +++ + A+ + ++++KE+ +P + +I F
Sbjct: 526 VFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERC-RPTSRTFMPIIHGF 584
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
G + ++ ++ + P + FNAL+ LV + + V+ + M G PD
Sbjct: 585 ARAGEMRRALEIFDMMRRSGCI-PTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPD 643
Query: 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+Y T+++G A+ + AF+Y+
Sbjct: 644 EHTYTTIMHGYAALGDTG-------KAFEYF 667
>gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219
Y +I ++G G + V + L E L P++ +N L+K + + +V + EL+
Sbjct: 687 YNIVINIYGEQGWIEEVSDVLAEL-NECGLRPDLCSYNTLIK---AYGIAGMVEEAVELI 742
Query: 220 KTV---GCEPDRSSYRTVINGLE 239
K + G EPD+++Y +IN L+
Sbjct: 743 KEMRKNGIEPDQTTYTNLINALK 765
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 96 QHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR--------QNHCLLALKVFEDI 147
+L + + +N D N+ F +L+F++ + + L R +N+ A +F+D
Sbjct: 115 SYLIKIYGEANLPDKALNT-FYIMLQFNIKPLTKHLNRILDILVSHRNYLRPAFDLFKDA 173
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILY--FYLKTENSLEPEIQGFNALLKCLVG 205
K + P Y +++ F NG + I Y F + + P+IQ + L++ L
Sbjct: 174 HKHGVF-PDTKSYNILMRAFCLNG---DISIAYTLFNKMFKRDVVPDIQSYRILMQALCR 229
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ VD +E M G PD +Y T++N L
Sbjct: 230 KSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSL 262
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPEIQGFNA 198
A +FE++ K + P Y MI +G G + +YF+ + ++ S EP++ +N+
Sbjct: 152 ARGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLD--DTVYFFEEMKSMSCEPDVITYNS 208
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
L+ C ++ Y MK G +P+ SY T+++ + + Q A K+Y
Sbjct: 209 LINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKED-------MMQQAIKFY 261
Query: 259 GDL 261
D+
Sbjct: 262 VDM 264
>gi|299471432|emb|CBN79384.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 962
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRK---------EQWYKPQVSLYADMIQVFGTNGLFQHV 176
V ++ N CL A K D+R+ E P Y+ I G GL++ V
Sbjct: 163 GVTPNIITYNSCLAACKAKGDLRRAVVLLEIMREDGIDPDQRSYSAAIATAGIRGLWEEV 222
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ ++ E+ L P+ FN +K + D+ MK G PD+ SY V+
Sbjct: 223 QGFLETMREED-LTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVL 280
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L L +Q + A ++F ++ KP + +Y ++ +G + L+ L +
Sbjct: 105 LLDGLCKQGYLGKAFRLFRAMQSSSL-KPDLVMYNILVDAMCKSGNLKDARELFSELFVK 163
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+P +Q + ++ L L D ++ + M+ GC PD SY +I G
Sbjct: 164 -GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGF 214
>gi|357491603|ref|XP_003616089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517424|gb|AES99047.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 552
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F D++K+ P V+ Y +I VFG L H+E F E L P I +N L+
Sbjct: 253 LFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHMEAT-FKEMNELPLAPNISTYNYLIGG 311
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEAMEEV 244
+ + + ++++ + EP+ +Y +I G LE ME++
Sbjct: 312 YISTWMWGDMERVFQVLNSGPVEPNVKTYLLMIRGYAHLGNLEKMEKI 359
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ L + C A K+F+ + K + +P ++ Y ++Q + T G + L L
Sbjct: 314 SLMNYLCKNGRCTKARKIFDSMTK-RGLEPDIATYRTLLQGYATKGALVEMHAL-LDLMV 371
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
N ++P+ FN L+ + D + + M+ G P+ Y TVI+
Sbjct: 372 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 422
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L P++ FN L++ L K +D+ ++ +E MK GC+PD +Y +I+ L
Sbjct: 363 GLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ +F D E+ P V Y+ +I G G L ++ + + P + +N+L
Sbjct: 345 AITLF-DAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI-PNVYTYNSL 402
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ L G + D ++ + M GC PD +Y T+I+
Sbjct: 403 ISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439
>gi|403223056|dbj|BAM41187.1| pentatricopeptide repeat containing protein [Theileria orientalis
strain Shintoku]
Length = 1735
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 1/167 (0%)
Query: 71 MRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRE 130
M++ G + K L+ G A Q H +S+ L+ + R+ + +
Sbjct: 1300 MKEGGNSSKSLEGGAFGGNGHYHAGQAHAVVHSNSSMLNAQIGKERERINEIIYGCMFDA 1359
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
+ N A+++FED++ KP +Y +I+ +G N + F + ++ +
Sbjct: 1360 YVNNNRVDSAMRLFEDMKVRGQVKPNTIMYTTLIKGYGQNKQLDKA-MKIFRMMQQDQVV 1418
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
P +N+++ E M EPD ++ T+I G
Sbjct: 1419 PNTVTYNSIIDACARVGDMSGATSLLEDMLMNDIEPDLITFSTIIKG 1465
>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 580
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 75 GQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNP---LDHVFNSKFRRLLKFDMIAVLREL 131
G R P + NL+ EA + V+ L + + SN L N +++ + EL
Sbjct: 88 GGPRPPKSKKSNLNSEAQELVRLLT-SKIRSNDKEVLLKTLNKYVKQVRTQHCFLLFEEL 146
Query: 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP 191
+ ++ L L+VF ++K++WY +Y+ +I V G G + L+ ++ P
Sbjct: 147 GKHDNWLQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRN-TGCRP 205
Query: 192 EIQGFNALLKCLVGFKLRDLV------VDCYELMKTVG-CEPDRSSYRTVI 235
+ +NAL+ + RD + + ++ MK + C+P+ +Y ++
Sbjct: 206 DTSVYNALI--TAHLRSRDKIKALAKAIGYFQKMKGMERCKPNIVTYNILL 254
>gi|147819559|emb|CAN76564.1| hypothetical protein VITISV_029137 [Vitis vinifera]
Length = 449
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 145 EDI--RKEQWYKPQVSLYA-DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
EDI ++Q+ + ++A +I ++G G+F+H L+ + N E + FNALL
Sbjct: 190 EDILEHQKQYNEISTEVFAVRLITLYGKAGMFEHAHKLFDEMPKLNC-ERTVMSFNALLS 248
Query: 202 CLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
V K D + + EL + +G PD SY ++N
Sbjct: 249 ACVNSKKFDKIDGFFQELPRNLGIVPDVVSYNILVNAF 286
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 136 HCLL-------ALKVFEDIRKEQ-WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
HCL+ A+ + +R+++ P V Y +I + G ++ + ++ + E
Sbjct: 301 HCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAE- 359
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN--GLEAMEEVA 245
++P I +NALL + ++L+K G PD SY T++N G A E A
Sbjct: 360 GVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKA 419
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EAI ++ ++ + N + +R L+ + L + C A K+F+ + K
Sbjct: 292 EAIGTLKKMRSDGVEPNVV------TYRSLMNY--------LCKNGRCTEARKIFDSMTK 337
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
+ +P ++ Y ++Q + T G + L L N ++P+ FN L+ +
Sbjct: 338 -RGLEPDIATYRTLLQGYATKGALVEMHAL-LDLMVRNGIQPDHHVFNILICAYAKQEKV 395
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVIN 236
D + + M+ G P+ Y TVI+
Sbjct: 396 DQAMLVFSKMRQHGLNPNVVCYGTVID 422
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL VF D+RK KP + ++ GL Y +KTE +EP ++ +
Sbjct: 381 ALHVFTDMRKSG-LKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYG-- 437
Query: 200 LKCLVGFKLRDLVVD-CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256
C+V R +D Y L+K + +PD + + +++ + V + I + F+
Sbjct: 438 --CMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFE 493
>gi|168005568|ref|XP_001755482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693189|gb|EDQ79542.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 765
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 19/192 (9%)
Query: 77 NRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
NRK + G L E A++ L+ A + L V +S L D+ +VLR +
Sbjct: 149 NRKS-KAGAALWSERRLAMETLQSADDVAATLREVGDS----LEIMDLNSVLRRFAKMKQ 203
Query: 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196
A VFE +++ P Y V G +G + ++ L ++ + +
Sbjct: 204 WRDACAVFEYMKENNKLSPPT--YTSYFSVLGKSGQSRKAIRVFNELPLDSEVRKNVFVC 261
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING-----------LEAMEEVA 245
N++L ++ D +E +K G +PD +Y TVI G L +E++
Sbjct: 262 NSILSTMIYNGKIDKAFRLFEQLKKEGLQPDTVTYSTVIAGCAKTRDGYSKALALIEDIK 321
Query: 246 FSGIIRQDAFKY 257
SG+ QDA Y
Sbjct: 322 ASGLT-QDAVIY 332
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 119 LLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE- 177
LL + AVL+ Q L AL +F ++KE +K Y MI+ G +G F +E
Sbjct: 5 LLPKHVAAVLK---YQKDPLKALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMER 61
Query: 178 -ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV---VDCYELMKTVGCEPDRSSYRT 233
++ L +NSL ++G + + + + V VD +E M CEP SY
Sbjct: 62 VLMEMRLNVDNSL---LEG--VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNA 116
Query: 234 VIN 236
++N
Sbjct: 117 IMN 119
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+ KE+ P Y +I F G V I + + P+I +N +L L
Sbjct: 354 LMKEKGLTPDAYSYDPLIAAFCREGRLD-VAIEFLETMISDGCLPDIVNYNTVLATLCKN 412
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D ++ + + VGC P+ SSY T+ + L
Sbjct: 413 GKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 444
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
Y + ++ M Q GL Q L P + + +++ L + D
Sbjct: 139 YTTLIDVFCKMCQFETAYGLLQ--------LMASRKCSPTVYSYCSIINGLCKNRKVDQA 190
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGL 238
+E MK GC+PDR +Y T+I+GL
Sbjct: 191 YQLFEEMKLAGCKPDRVTYNTLIHGL 216
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNA 198
A K+F + KE +P Y ++ G G + E+++ + +S+ P + +N
Sbjct: 547 AWKLFHQL-KEMKIEPTNGTYNTLLSGLGREGKVK--EVMHLLEEMTHSIHPPNLITYNT 603
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L CL + + M GC PD SSY TV+ GL
Sbjct: 604 VLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGL 643
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 145 EDIRKE---QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201
E++ KE + KP + Y +I + NG + ++ ++ E+ L P++ +N +
Sbjct: 509 EEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMR-ESGLIPDVITYNTFVA 567
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261
+ + +D M GC+P++++Y +VI+G + R DA K+ L
Sbjct: 568 SYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNR-------RDDAIKFISSL 620
Query: 262 EFLE 265
L+
Sbjct: 621 HELD 624
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL-FQHVEILYFYLKTENSLEPEIQGFNA 198
A+ VF+ + +E+ KP + Y ++ V+G G+ + + L+ +K L P+ +N
Sbjct: 52 AVMVFKKM-EEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGIL-PDEYTYNT 109
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L+ C L + +E MK++G PD+ +Y T+++
Sbjct: 110 LITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLD 147
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVFE+I K P + + ++ VFG NG+ V ++ +K PE +N L+
Sbjct: 264 MKVFEEI-KICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK-RVGFVPERDTYNTLI 321
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y+ M G PD S+Y V+ L
Sbjct: 322 SAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAAL 359
>gi|125542873|gb|EAY89012.1| hypothetical protein OsI_10494 [Oryza sativa Indica Group]
Length = 563
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L+ + ALK+F++I + V +Y +I V G ++ VE L+ L +
Sbjct: 227 ILKAVATTEGYFAALKMFDEIEESDKKNVDVIVYNTVISVCGRAKDWRQVERLWRRLG-D 285
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
NSL + ++ L+ V +L VD Y+ M G +P + +I
Sbjct: 286 NSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFKSGIDPSEDILKAII 334
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + + V +Y+ +I FG G ++ L + L P + +N L
Sbjct: 673 AYMLFEEA-KSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCL 730
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + C++ MK + C P+ +Y +I+GL
Sbjct: 731 LDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGL 769
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
R + C+L L F+ + +E Y V L+ +I+VF G L +K+ NSLEP+
Sbjct: 214 RDSDCMLTL--FQQM-QELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKS-NSLEPD 269
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ +N + C D+ + MK G D +Y ++I L
Sbjct: 270 VVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVL 315
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F + K KP ++ Y ++Q + T G + L L N ++
Sbjct: 307 LCKNRRCTEARKIFNSMTK-CGLKPDITTYCTLLQGYATKGALVEMHDL-LDLMVWNGIQ 364
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
P FN L+ + D + + M+ G P+ +YRTVI+ L + V
Sbjct: 365 PNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRV 418
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + + V +Y+ +I FG G ++ L + L P + +N L
Sbjct: 673 AYMLFEEA-KSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCL 730
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + C++ MK + C P+ +Y +I+GL
Sbjct: 731 LDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGL 769
>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
Length = 454
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
Y + ++ M Q GL Q L P + + +++ L + D
Sbjct: 114 YTTLIDVFCKMCQFETAYGLLQ--------LMASRKCSPTVYSYCSIINGLCKNRKVDQA 165
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGL 238
+E MK GC+PDR +Y T+I+GL
Sbjct: 166 YQLFEEMKLAGCKPDRVTYNTLIHGL 191
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D+ K + P V Y ++ + G F+ V + ++ EN P + + ++ L
Sbjct: 297 DLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR-ENGCNPNVVTYTIVMHSLGK 355
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEVAFSGIIRQDAF 255
K + YE MK GC PD Y ++I+ L E E++ G +R+D
Sbjct: 356 SKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG-VRRDVL 414
Query: 256 KY 257
Y
Sbjct: 415 VY 416
>gi|449513167|ref|XP_004164250.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g36300-like [Cucumis sativus]
Length = 433
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ +Q C +KV + + E +P + + +I F G +Y ++
Sbjct: 267 IANAFAQQGLCEETVKVLQLMEAEG-IEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEV 325
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
+ P++ + L+K + K V + Y+ M++ GC PDR + R ++ + A+ E
Sbjct: 326 KGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMESAGCTPDRKA-REMLKSVTAILE 381
>gi|449505420|ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial-like [Cucumis sativus]
Length = 795
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216
+ +Y +I+ + + LF V L F L + + P I N LL L+ ++ + Y
Sbjct: 146 IRVYDALIKAYVSVNLFDSVVDLLFRLGRKGFV-PHIFTCNYLLNRLIEHGKMNMALVVY 204
Query: 217 ELMKTVGCEPDRSSYRTVINGL 238
E +K GC+P+ +Y TVI GL
Sbjct: 205 EQLKRFGCQPNDYTYATVIKGL 226
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A++ L C+ A++ FE+++K + ++ A ++ + GL +L+F
Sbjct: 273 AIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITA-VLSAYRNAGLVSE-GLLFFRRLK 330
Query: 186 ENSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
++ ++P IQ + C+V R + D E ++ + EPD +RT+I G + + +V
Sbjct: 331 KHKIKPTIQHYG----CVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDV 386
Query: 245 AFSG-IIRQDAFKYYGDLEFLEEDEEDIAAY 274
S ++R+ LE L D D +Y
Sbjct: 387 ERSERLVRE--------LELLNMDSRDTGSY 409
>gi|449458393|ref|XP_004146932.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g36300-like [Cucumis sativus]
Length = 455
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ +Q C +KV + + E +P + + +I F G +Y ++
Sbjct: 267 IANAFAQQGLCEETVKVLQLMEAEG-IEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEV 325
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
+ P++ + L+K + K V + Y+ M++ GC PDR + R ++ + A+ E
Sbjct: 326 KGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMESAGCTPDRKA-REMLKSVTAILE 381
>gi|356495758|ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 554
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192
+Q C + V + I + + +P + + +I FG G + +Y ++K E+ + P+
Sbjct: 408 QQGLCEQVIMVLQ-IMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHIK-ESGVSPD 465
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230
+ + L+K + K D V Y+ M+ C PDR +
Sbjct: 466 VVTYTTLMKAFIRAKKFDEVPIIYKEMENDRCTPDRKA 503
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K++ P V Y+ ++ F NG + L+ + S++P+I +++L
Sbjct: 347 AARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSL 404
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D ++LM + GC D SY T+ING
Sbjct: 405 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 443
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K++ P V Y+ ++ F NG + L+ + S++P+I +++L
Sbjct: 244 AARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSL 301
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D ++LM + GC D SY T+ING
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQ-VFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
ALK+ + + E+ +P + Y+ +I + T + + +L L E P++ + +
Sbjct: 525 ALKMLQ-VMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVML--EKGCVPDVATYTS 581
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ D C++ M+ GCEPD+ +Y +I+G
Sbjct: 582 LIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGF 621
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y M+ + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSREIM-PDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + I ++ + Y
Sbjct: 227 IKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKY 285
>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 481
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E YF E ++P + + L
Sbjct: 169 ANRFFEDLKSRE-ITPDVVTYNTMINGYTRVKKMEEAE-KYFLEMKEKKIDPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K D + E MK +G +P+ +Y T++ GL
Sbjct: 227 IKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGL 265
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K+ P + Y +I +G GL L+ +K + EP++ +NAL+ C ++
Sbjct: 279 KQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMK-DVGCEPDVITYNALINCFCKYEQ 337
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
MK G +P+ +Y T+I+ L
Sbjct: 338 MPKAFHFLHEMKNSGLKPNVVTYSTLIDAL 367
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 110 HVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT 169
+VF+ +RL FD V + + AL +F+ + + +P + Y ++
Sbjct: 44 YVFHHILKRL--FDPKLVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 101
Query: 170 NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS 229
+ + E + Y +T L P +Q +N L+K K D + M G PD
Sbjct: 102 SNKWDEAESFFLYFETM-GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVF 160
Query: 230 SYRTVINGL 238
SY T+IN L
Sbjct: 161 SYGTLINSL 169
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 85 RNLSIEAIQAV-QHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKV 143
R S + IQ++ Q +K L +P D+ +N+ ++ ++ +HC AL++
Sbjct: 122 RGDSWDRIQSLFQEMK--DLEISPDDYTYNT------------MITACIQNSHCQEALRL 167
Query: 144 FEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203
F+++ KE P Y ++ V+G G+ + L ++ + P I +N L+
Sbjct: 168 FQEM-KEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA-GISPNIVTYNELIAAY 225
Query: 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242
L D + + + G PD +Y T+I+ E
Sbjct: 226 ARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAE 264
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ +Y T++ GL E+++ + I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKY 285
>gi|255574996|ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532192|gb|EEF33997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 955
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K+ Y Y MI ++G G V + L+ E L P++ +N L+K +
Sbjct: 846 KQSSYTSDHYTYNIMINIYGEQGWIDEVAGVLTELR-ECGLRPDLCSYNTLIKAYGVAGM 904
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
+ +D + M+ G EPD+ +Y +I L+
Sbjct: 905 VEDAIDLVKEMRENGIEPDKITYSNLITALQ 935
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
LA ++FE + Q P V+LY M+ G F+ + ++ ++ + + P+ FN
Sbjct: 526 LAEELFEQMLNAQ-IDPNVNLYNIMLHHLCKVGHFKRAQTIFSHM-IQKEVSPDTVTFNT 583
Query: 199 LLKCLVGFKLRDL-VVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ L G + R + ++ ++ M+T G EPD +++ +I+GL
Sbjct: 584 LIYWL-GKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGL 623
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K + P V + +I F G + LY + S+ P I +N+L
Sbjct: 774 AARLLRDMVKRK-IDPNVIFFTALIDTFVKEGNLLEAKNLYKEM-IRRSVHPNILTYNSL 831
Query: 200 LKCLVGFKLRDLVVDC---YELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAF 246
+ GF ++ + D ++LM + GC PD +Y T+I +G++ E+
Sbjct: 832 IN---GFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTH 888
Query: 247 SGIIRQDAFKY 257
G++ DAF Y
Sbjct: 889 QGLV-GDAFTY 898
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K + P V + +I F G + LY + ++S+ P +N+L
Sbjct: 225 AARILRDMTKRR-INPDVFTFTALIDAFVKQGNLDEAQELYKQM-LQSSIGPNTVTYNSL 282
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L ++LM + GC P+ +Y T+ING
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGF 321
>gi|357491601|ref|XP_003616088.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517423|gb|AES99046.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+F D++K+ P V+ Y +I VFG L H+E F E L P I +N L+
Sbjct: 195 LFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHMEAT-FKEMNELPLAPNISTYNYLIGG 253
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEAMEEV 244
+ + + ++++ + EP+ +Y +I G LE ME++
Sbjct: 254 YISTWMWGDMERVFQVLNSGPVEPNVKTYLLMIRGYAHLGNLEKMEKI 301
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
++P V LY +I + G ++ YF T + ++ + ++K L K D
Sbjct: 72 FRPDVFLYTSVIHGYCKAG---DLDTGYFRAVTPKA-SLDVISYTTVIKGLADSKRIDEA 127
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGL 238
+ +E +KT GC P+ +Y VI+GL
Sbjct: 128 CELFEELKTAGCSPNVVAYTAVIDGL 153
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+ KE+ P Y +I F G V I + + P+I +N +L L
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLD-VAIEFLETMISDGCLPDIVNYNTVLATLCKN 416
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D ++ + + VGC P+ SSY T+ + L
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL VF+ +R+ +P + Y ++ F + VE L+ Y +T + P +Q +N L
Sbjct: 97 ALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVL 155
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K K + M G +PD SY TVIN L
Sbjct: 156 IKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDL 194
>gi|255555097|ref|XP_002518586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542431|gb|EEF43973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P + + ++ F +NGLF E ++ + + S+ P+I+ +NA L L K V
Sbjct: 197 PDLITFNTLLNGFYSNGLFVDGERIWSQM-VQKSIVPDIRSYNAKLLGLALVKRTKDAVL 255
Query: 215 CYELMKTVGCEPDRSSYRTVINGL---EAMEEVAF--------SGIIRQDAFKYY----- 258
+ MK+ G +PD S+ +I G E +EE + G D F +
Sbjct: 256 LLQEMKSKGIKPDVISFNALIKGFVKEENLEEAKYWYCETRNSGGDCGPDKFTFTTLIPF 315
Query: 259 ----GDLEFLEEDEEDIAA 273
GDL F E +D+ +
Sbjct: 316 VCEKGDLRFAFELSKDVIS 334
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+ KE+ P Y +I F G V I + + P+I +N +L L
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLD-VAIEFLETMISDGCLPDIVNYNTVLATLCKN 416
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D ++ + + VGC P+ SSY T+ + L
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT-ENSLEPEIQGFNA 198
++ED+ K Y P V +Y ++ GL H L F +KT S+ P + FN+
Sbjct: 337 GFALYEDMIK-MGYPPDVVIYGVLVDGLCKQGLMLHA--LRFSVKTLGQSIRPNVVVFNS 393
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
L+ D + + LM G +PD ++ T+ M G +++ F ++
Sbjct: 394 LIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTL------MRVTVMEGRLKEGLFLFF 447
Query: 259 GDLEFLEEDEEDIAAYC 275
F E D A+C
Sbjct: 448 --RMFKMGLEPDAVAFC 462
>gi|242084014|ref|XP_002442432.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
gi|241943125|gb|EES16270.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
Length = 535
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+++ L+ AL++F+D+ Q P + I T G H ++ + +
Sbjct: 355 MVKAFLKGRRVADALQMFDDMLV-QGVLPNTGMITSFINPLCTFGP-PHAALMIYKKSRK 412
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ + LL+ L F +V+D +E M+ G +PD+ Y ++NGL
Sbjct: 413 AGCVISLKAYKLLLERLAKFGKSGIVLDIWEEMQECGYQPDKEIYEFIVNGL 464
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 85 RNLSIEAIQAVQHLKRAHLHSNPLDHV--FNSKFRRLLKFDMIAVLRELLRQ------NH 136
RN++ +A+ A H+ +++NPL + F F L++ + L +Q +H
Sbjct: 70 RNIN-DALSAFNHM----VNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISH 124
Query: 137 CLLALKV--------------FEDIRK--EQWYKPQVSLYADMIQVFGTNG-LFQHVEIL 179
+L+L + F + K + +P V ++ +I F G + + +E+
Sbjct: 125 DVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIEL- 183
Query: 180 YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
F + +P + ++ ++K L V+ E MK VGCEPD Y T+++ L
Sbjct: 184 -FDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRL 241
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V + +I F G F E LY + S+ P I + +L+ GF + V
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEM-IRMSIAPNIFTYTSLIN---GFCMEGCVD 299
Query: 214 DC---YELMKTVGCEPDRSSYRTVINGL 238
+ + LM+T GC PD +Y ++ING
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGF 327
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FED+R +KP V + ++ + G + + +K + +EP+I +N L
Sbjct: 246 AASLFEDMRYR--WKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMK-DMGIEPDIVVYNNL 302
Query: 200 LKCLVGFKLRDLVVDCYELMKTVG---CEPDRSSYRTVINGL---EAMEEVA 245
L G+ + D Y+L+K + CEP+ +SY +I L E +EE
Sbjct: 303 LG---GYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEAT 351
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K+ +++R + KP + Y+ ++ G I +F+ ++P +NA+
Sbjct: 313 AAKLLDEMR-AKGLKPDIITYSSLVGGLSREGKVDEA-IKFFHDLEVLGVKPNAITYNAI 370
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL-------EAME---EVAFSGI 249
+ L + D +D M GC+P +SY +I GL EA+E E+ G+
Sbjct: 371 MLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430
Query: 250 IRQDA 254
+++ +
Sbjct: 431 VKKSS 435
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSL 189
L + + A KVF+ + K + +KP S+Y ++ + T G L Q ++L ++ N
Sbjct: 286 LCKNGRSMEARKVFDSMVK-KGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVR--NGT 342
Query: 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+P+ FN L+ + D + + M+ G P+ +Y TV++ L
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391
>gi|242091205|ref|XP_002441435.1| hypothetical protein SORBIDRAFT_09g026630 [Sorghum bicolor]
gi|241946720|gb|EES19865.1| hypothetical protein SORBIDRAFT_09g026630 [Sorghum bicolor]
Length = 664
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
I YF E L+P+ ++ L+ LVGF + D + ++ MK G P SSY T++
Sbjct: 417 ISYFDKMDELELKPDATAYHKLVDGLVGFSMVDKAQEYFDQMKEKGVSPSISSYETLL 474
>gi|255572014|ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533700|gb|EEF35435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 671
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A++V+E + K KP + Y M VF G F +V+ + + + +EP I +NA+
Sbjct: 481 AVRVWEHMLKVD-VKPNLYAYTIMASVFAGQGKFTYVDAIIQKM-VSSGIEPTIITYNAI 538
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L + + MK P++ +Y +I L
Sbjct: 539 ISGCTHNNLSSAAYEWFHRMKVQNMPPNKITYEMLIEAL 577
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K++ P V Y+ ++ F NG + L+ + S++P+I +++L
Sbjct: 244 AARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSL 301
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D ++LM + GC D SY T+ING
Sbjct: 302 VNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
>gi|147862833|emb|CAN78364.1| hypothetical protein VITISV_028668 [Vitis vinifera]
Length = 488
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK-TENSLEPEIQGFNALLK 201
F +R+ KP V++Y +I G +H +++ Y K ++ ++P++ FN+L+
Sbjct: 71 AFASMRRMIDGKPSVAMYNILIN--GYVKCREHEKVMTVYEKMIKDRVKPDVFTFNSLIS 128
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L ++ ++ MK GC P+ S+ T+I G
Sbjct: 129 SCCRNSQFGLALEMFKEMKDKGCSPNVVSFNTLIKG 164
>gi|332239238|ref|XP_003268813.1| PREDICTED: pentatricopeptide repeat-containing protein 3,
mitochondrial [Nomascus leucogenys]
Length = 689
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQ--VFGTNGLFQH-----VEI 178
++R +++ C AL ++ ++ + + V + MI+ VF N F+ +E+
Sbjct: 261 TMIRGMVKHRACEQALNLYTELLNNR-LRADVYTFNAMIEATVFVINEKFEEKWSKILEL 319
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKL--RDLVVDCYELMKTVGCEPDRSSYRTVI 235
L + + ++P +Q FN +LKCL F + R + MK +G EP ++Y +I
Sbjct: 320 LRHMVAQK--VKPNLQTFNTILKCLRRFHVLARSPALQILREMKAIGIEPSLATYHHII 376
>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Glycine max]
Length = 589
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P Y +I +G + V+ + + E S P +N LL L L D +
Sbjct: 337 QPNAVTYNTLIHSLINHGYWDEVDDI-LKIMNETSSPPTHVTYNILLNGLCKSGLLDRAI 395
Query: 214 DCYELMKTVGCEPDRSSYRTVINGL 238
Y M T C PD +Y T+++GL
Sbjct: 396 SFYSTMVTENCSPDIITYNTLLSGL 420
>gi|413946102|gb|AFW78751.1| hypothetical protein ZEAMMB73_641405 [Zea mays]
Length = 666
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
I YF E L+P+ ++ L+ LVGF + D + + MK G P SSY T++
Sbjct: 417 ISYFDKMDELELKPDATAYHKLIDGLVGFSMVDKAQEYFNQMKEKGVNPSISSYETLLKA 476
Query: 238 ------LEAMEEVAFSGIIRQDAFKYYGDLEFLE 265
L+ VA ++ + YG E LE
Sbjct: 477 YIAADRLDDAVNVAKGILLNEKVLFSYGMRELLE 510
>gi|225465247|ref|XP_002267973.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g10270-like [Vitis vinifera]
Length = 627
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 95 VQHLKRAH---LHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ 151
++H K+A L LD+ F+ + ++ E ++ A++VF+ + K+Q
Sbjct: 323 LKHDKKAEAWALFDQMLDNHTPPNFQAVNSDSFSVMVNECVKLGKFTEAIEVFKKVGKKQ 382
Query: 152 WYKP---QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI--------------- 193
KP V+ Y ++I F NGL E L+ L T+ SL P++
Sbjct: 383 GSKPFAMDVAGYNNIIARFCENGLLSEAEQLFGELSTK-SLTPDVNIYRTFIEAYFGMER 441
Query: 194 -----QGFNAL----LKCLVGF--KLRDLVVD------CYELMKTVG---CEPDRSSYRT 233
Q FN L+ +V F K+ D +V+ C ++ +G +PD ++Y
Sbjct: 442 ADDALQMFNRFVDSGLRVIVSFANKVFDELVNKGKAGECVPVLTKMGEKDPKPDPTTYEI 501
Query: 234 VINGL 238
VI GL
Sbjct: 502 VIKGL 506
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198
+A+K FE++ KP V Y +I G NG + + ++ E L P++ ++
Sbjct: 491 IAVKFFEELENSDC-KPDVISYNSLINCLGKNGDVDEAHMRFKEMQ-EKGLNPDVVTYST 548
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
L++C ++ ++ M C P+ +Y +++ LE
Sbjct: 549 LIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLE 589
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L + L ++ + + KVFED+++ +P V Y MI++ G + L F
Sbjct: 237 MLLDALAKDEKVCSYKVFEDMKRRHC-EPDVFTYTIMIRMTGKSSKTDEALAL-FQAMLA 294
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
P + G+N +++ L ++ D V + M +P+ +Y ++N L A
Sbjct: 295 KGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVA 348
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+KVF+DI+ P + + ++ VFG NG+ V ++ +K E FN L+
Sbjct: 424 MKVFDDIKLCNC-SPDIVTWNTLLAVFGQNGMDSQVSGIFKEMK-RAGFVAERDTFNTLI 481
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D + Y+ M G PD S+Y V+ L
Sbjct: 482 SAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAAL 519
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ KP Y +I + NG + ++ +K +++L P++ +N + +
Sbjct: 677 EKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMK-DSALVPDVVTYNTFIATYAADSMF 735
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVIN 236
+D M GC+PD+++Y ++++
Sbjct: 736 AEAIDVVRYMIKQGCKPDQNTYNSIVD 762
>gi|226496595|ref|NP_001146253.1| uncharacterized protein LOC100279827 [Zea mays]
gi|219886401|gb|ACL53575.1| unknown [Zea mays]
Length = 666
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
I YF E L+P+ ++ L+ LVGF + D + + MK G P SSY T++
Sbjct: 417 ISYFDKMDELELKPDATAYHKLIDGLVGFSMVDKAQEYFNQMKEKGVNPSISSYETLLKA 476
Query: 238 ------LEAMEEVAFSGIIRQDAFKYYGDLEFLE 265
L+ VA ++ + YG E LE
Sbjct: 477 YIAADRLDDAVNVAKGILLNEKVLFSYGMRELLE 510
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE--PEIQGFN 197
A+ +F + E K V + ++ V GLF Y ++ SL P FN
Sbjct: 115 AVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFN 174
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
++K + L D ++ + + C PD +Y T+++GL E +
Sbjct: 175 LVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERI 221
>gi|413934891|gb|AFW69442.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 507
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 123 DMIAVLR----ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
D IA LR +LL + C++A + + +E+ ++P + + +I FGT G +H+E
Sbjct: 354 DCIAALRAENTQLLPRVFCVIANAYAQQLMEEEGFEPNLVMLNSLINAFGTAG--RHLEA 411
Query: 179 LYFYLKTENS-LEPEIQGFNALLKCLV 204
L + ++S + P++ + L+K +
Sbjct: 412 LAVFQHIKDSGMSPDVVTYTTLMKTFM 438
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V +++ K +P + + ++ F NG + E ++ +K +N++ P ++ +NA
Sbjct: 182 ALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMK-KNNVAPNVRSYNAK 239
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ ++ V+ + MKT G +PD + +++ G
Sbjct: 240 LRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGF 278
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 98 LKRAHLHSNPLDHVFNSKFRRLLKFDMIA-------VLRELLRQNHCLLALKVFEDIRKE 150
L RAH HS+ L H + F ++ K I +++ L R++ AL V +++
Sbjct: 244 LIRAHCHSDKLSHAY-FLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLN- 301
Query: 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
+ Y P Y ++ + L +K P++ +N ++ GF
Sbjct: 302 KGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGC-NPDVINYNTVI---TGFCREG 357
Query: 211 LVVDCYELMKTV---GCEPDRSSYRTVINGL 238
+D ++++ + GC P+ SYRT++NGL
Sbjct: 358 RALDACQILRDMPENGCLPNALSYRTLVNGL 388
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 104 HSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADM 163
HS H K R +F + L + +R++ C Y P L+ D+
Sbjct: 131 HSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCP--------------YTP--GLFVDI 174
Query: 164 IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223
I+++G G+ I F+ E EP + FN LL L+ K + + ++ + G
Sbjct: 175 IEIYGEVGMPNEA-IKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFG 233
Query: 224 CEPDRSSYRTVI 235
P+ +Y +I
Sbjct: 234 ISPNTRTYNILI 245
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E YF E ++P + + L
Sbjct: 169 ANRFFEDMKSRE-ITPDVITYNTMINGYNRVKKMEEAE-KYFLEMKERKIDPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K D + E MK +G +P+ +Y T++ GL
Sbjct: 227 IKGYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGL 265
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGL 265
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V ++ + G + + +FY E + P + FN+L+K + D V
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEA-LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +LM+ G +PD ++ T++N ++ ++
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDM 617
>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g23020-like [Cucumis sativus]
Length = 859
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A FE++ KE P + MI + G +G + V L ++ E P+ + +N L
Sbjct: 336 ASTTFENMLKEG-VSPTTVTFNTMIHICGNHGQLKEVTFLMQKME-ELQCPPDTRTYNIL 393
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ DL + + M+ G +PD SYRT++
Sbjct: 394 ISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLL 429
>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Cucumis sativus]
Length = 858
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A FE++ KE P + MI + G +G + V L ++ E P+ + +N L
Sbjct: 335 ASTTFENMLKEG-VSPTTVTFNTMIHICGNHGQLKEVTFLMQKME-ELQCPPDTRTYNIL 392
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ DL + + M+ G +PD SYRT++
Sbjct: 393 ISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLL 428
>gi|413952228|gb|AFW84877.1| hypothetical protein ZEAMMB73_259977 [Zea mays]
Length = 453
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 29/165 (17%)
Query: 101 AHLHSNPLDHVFNSKFRRLLK-------FDMIAVLRELLRQNHCLLALKVFED--IRKEQ 151
A H P H + F LL FD +A + + H +A ++ +
Sbjct: 143 AIFHDLPPKHKSSMTFNALLAAYLDASDFDALATALQEIPATHPTIAPTIYSHNILISAL 202
Query: 152 WYKPQVSLYADMIQV-------------------FGTNGLFQHVEILYFYLKTENSLEPE 192
KP +S D+I + F +N F VE ++ +K E ++EP+
Sbjct: 203 CKKPDLSAAVDVITLMEKRGITPDIISFNILLNGFYSNDRFDDVEKVWEMMK-ERNVEPD 261
Query: 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +NA L+ LV + E M+ G +PD SY +I G
Sbjct: 262 ARSYNAKLRGLVSQGRVEDAAALIERMQKEGPKPDSVSYNELIRG 306
>gi|147772351|emb|CAN60262.1| hypothetical protein VITISV_020169 [Vitis vinifera]
Length = 627
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 95 VQHLKRAH---LHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ 151
++H K+A L LD+ F+ + ++ E ++ A++VF+ + K+Q
Sbjct: 323 LKHDKKAEAWALFDQMLDNHTPPNFQAVNSDSFSVMVNECVKLGKFTEAIEVFKKVGKKQ 382
Query: 152 WYKP---QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI--------------- 193
KP V+ Y ++I F NGL E L+ L T+ SL P++
Sbjct: 383 GSKPFAMDVAGYNNIIARFCENGLLSEAEQLFGELSTK-SLTPDVNIYRTFIEAYFGMER 441
Query: 194 -----QGFNAL----LKCLVGF--KLRDLVVD------CYELMKTVG---CEPDRSSYRT 233
Q FN L+ +V F K+ D +V+ C ++ +G +PD ++Y
Sbjct: 442 ADDALQMFNRFVDSGLRVIVSFANKVFDELVNKGKAGECVPVLTKMGEKDPKPDPTTYEI 501
Query: 234 VINGL 238
VI GL
Sbjct: 502 VIKGL 506
>gi|413934892|gb|AFW69443.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 561
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 123 DMIAVLR----ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
D IA LR +LL + C++A + + +E+ ++P + + +I FGT G +H+E
Sbjct: 354 DCIAALRAENTQLLPRVFCVIANAYAQQLMEEEGFEPNLVMLNSLINAFGTAG--RHLEA 411
Query: 179 LYFYLKTENS-LEPEIQGFNALLKCLV 204
L + ++S + P++ + L+K +
Sbjct: 412 LAVFQHIKDSGMSPDVVTYTTLMKTFM 438
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y MI + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSRE-ISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
+K V D + E MK G +P+ Y T++ GL E+++ + I ++ Y
Sbjct: 227 IKGYVSVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMSEARSILKEMMDKY 285
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V +++ K +P + + ++ F NG + E ++ +K +N++ P ++ +NA
Sbjct: 192 ALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMK-KNNVAPNVRSYNAK 249
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ ++ V+ + MKT G +PD + +++ G
Sbjct: 250 LRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGF 288
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + +I FG + + Y+K EN ++P++ + L+K L+ V
Sbjct: 587 KPSLLALNSLINAFGEDRRDAEAFAVLQYMK-ENGVKPDVVTYTTLMKALIRVDKFQKVP 645
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
YE M GC+PDR + + + L M++
Sbjct: 646 VVYEEMIMSGCKPDRKARSMLRSALRYMKQT 676
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY-----LKTENSLEPEIQ 194
A+++F + E + KP V + ++ V G H L FY K N L P +
Sbjct: 126 AIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGF--HDRALEFYNHVVGAKDMNIL-PNVL 182
Query: 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
FN ++K + L D ++ + M C PD +Y T+++GL ++ +
Sbjct: 183 SFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRI 232
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + +I FG + + Y+K EN ++P++ + L+K L+ V
Sbjct: 616 KPSLLALNSLINAFGEDRRDAEAFAVLQYMK-ENGVKPDVVTYTTLMKALIRVDKFQKVP 674
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
YE M GC+PDR + + + L M++
Sbjct: 675 VVYEEMIMSGCKPDRKARSMLRSALRYMKQT 705
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V ++ + G + + +FY E + P + FN+L+K + D V
Sbjct: 551 KPNVRTCGTIVNGYCEEGKMEEA-LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 609
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +LM+ G +PD ++ T++N ++ ++
Sbjct: 610 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDM 640
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
+ P Y +I + L L ++ L P++ FN+L++ L L
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL-PDVCTFNSLIQGLCLTNNHRLA 440
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGL 238
++ +E MKT GC PD +Y +I+ L
Sbjct: 441 MELFEEMKTKGCHPDEFTYNMLIDSL 466
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 35/142 (24%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE------------- 177
L + +H ALKV D+ ++ + P V Y ++ NG + +
Sbjct: 296 LCQNDHVGHALKVM-DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354
Query: 178 ------ILYFYLKTENSLE---------------PEIQGFNALLKCLVGFKLRDLVVDCY 216
L L T N LE P++ FN L+ L L + +
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414
Query: 217 ELMKTVGCEPDRSSYRTVINGL 238
E MK GC PD +Y T+I+ L
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNL 436
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 116 FRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
F +L+K +++ A++ H ALK+F +R E P + ++ G+
Sbjct: 322 FEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGM 381
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232
+ + + + S++P +Q F L+ L G R + Y+L+K + +PD +
Sbjct: 382 VKEAKEFFGLMVDVYSIKPTVQHFTCLVDVL-GHAGR--FEEAYDLIKGMPMQPDSGIWG 438
Query: 233 TVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAAY 274
++NG + + V + Q + +E + ED Y
Sbjct: 439 ALLNGCKIHKNVELGELALQ---------KLIELEPEDAGNY 471
>gi|356508382|ref|XP_003522936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Glycine max]
Length = 854
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219
Y +I ++G G V + LK E L P++ +N L+K + + +V + L+
Sbjct: 756 YNTLINIYGEQGWINEVANVLTELK-ECGLRPDLCSYNTLIK---AYGIAGMVAEAVGLI 811
Query: 220 KTV---GCEPDRSSYRTVINGL 238
K + G EPD+ SY +I L
Sbjct: 812 KEMRKNGIEPDKKSYTNLITAL 833
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V ++ + G + + +FY E + P + FN+L+K + D V
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEA-LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +LM+ G +PD ++ T++N ++ ++
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDM 617
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 35/142 (24%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE------------- 177
L + +H ALKV D+ ++ + P V Y ++ NG + +
Sbjct: 296 LCQNDHVGHALKVM-DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354
Query: 178 ------ILYFYLKTENSLE---------------PEIQGFNALLKCLVGFKLRDLVVDCY 216
L L T N LE P++ FN L+ L L + +
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414
Query: 217 ELMKTVGCEPDRSSYRTVINGL 238
E MK GC PD +Y T+I+ L
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNL 436
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN---SLEPEIQGFNALLKC 202
D K + KP Y +I +G G + F ++ E P + +NAL+KC
Sbjct: 477 DEMKXRGIKPDHISYNTLISGYGRRGDIKDA----FXVRDEMLSIGFNPTLLTYNALIKC 532
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + DL + + M G PD S+Y ++I G+
Sbjct: 533 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568
>gi|147791424|emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
Length = 383
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 21/163 (12%)
Query: 79 KPLQRGRNLS--IEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNH 136
K + R RNL ++ + L R + ++ RRL + E+L +
Sbjct: 31 KDIYRERNLKRLVQKFKKSSELDRFRTKTG----IYEETVRRLASAKRFRWIEEILEEQ- 85
Query: 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196
K ++DI +E + +SLY G +G+F H F + E + F
Sbjct: 86 -----KKYKDISREGFAVRLISLY-------GKSGMFDHA-FKVFDEMPDQKCERSVLSF 132
Query: 197 NALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
N LL V K D V + EL + EPD SY VI GL
Sbjct: 133 NXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLVSYNIVIKGL 175
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALKVFE+++ Q KP V Y ++ G ++L + + N L+P + +NAL
Sbjct: 322 ALKVFEEMQ-SQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN-LKPNVITYNAL 379
Query: 200 LKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVING 237
+ G+ + L+ + EL + G P+ ++ T+++G
Sbjct: 380 IN---GYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHG 417
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 35/142 (24%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE------------- 177
L + +H ALKV D+ ++ + P V Y ++ NG + +
Sbjct: 296 LCQNDHVGHALKVM-DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354
Query: 178 ------ILYFYLKTENSLE---------------PEIQGFNALLKCLVGFKLRDLVVDCY 216
L L T N LE P++ FN L+ L L + +
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414
Query: 217 ELMKTVGCEPDRSSYRTVINGL 238
E MK GC PD +Y T+I+ L
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNL 436
>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFNALLKCLVGFK 207
E+ KP Y +I F E Y L E L+P++ +N +L L +
Sbjct: 286 EKGCKPDTVTYNVLINGFCVE---NDSESAYRVLDEMVEKGLKPDVISYNMILGVLFRIQ 342
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGL-EAMEEVAFSGIIRQDAFKYY 258
+ +E M GC PD SYR V +GL E ++ + I+ + FK Y
Sbjct: 343 KWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAAILDEMLFKGY 394
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG---- 195
ALK+ +D+ K +P V +YA +++ L Q E+ + + + + E +I+
Sbjct: 206 ALKMKQDMLKVYGVRPTVHIYASLVK-----ALCQIGELSFAFKLKDEAYEGKIKVDSAI 260
Query: 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ L+ L+ + V E M GC+PD +Y +ING
Sbjct: 261 YSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGF 303
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C A K+F + K + KP ++ Y+ ++ + G + L F L ++ ++
Sbjct: 313 LCKNGRCTEARKIFYSMVK-RGLKPDITTYSSLLHGYAIEGALVEMHGL-FDLMVQSDMQ 370
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
P+ FN L+ D + + M+ G +P+ +Y T+ING
Sbjct: 371 PDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLING 417
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V ++ + G + + +FY E + P + FN+L+K + D V
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEA-LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +LM+ G +PD ++ T++N ++ ++
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDM 617
>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
Length = 657
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 131 LLRQNHCL-----LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+L ++HC +A++ FE++ +E +P V+ Y ++ +G V + + T
Sbjct: 408 MLIRDHCKRGKMDMAMECFEEM-QEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEM-T 465
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ P+ + +NAL+K L K+ D Y+ M G EP +Y ++
Sbjct: 466 QKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMM 515
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ L + A K+F+ + K + +P ++ Y ++Q G E L F L
Sbjct: 284 SLMNYLCKNGRSTEARKIFDSMTK-RGLEPDIATYRTLLQGHCKEGRVIESEKL-FDLMV 341
Query: 186 ENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
++P+I +N L+ CL G K+ D M +VG +PD +Y T+ING
Sbjct: 342 RIGVKPDIITYNTLIDGCCLAG-KM-DEATKLLASMVSVGVKPDIVTYGTLING 393
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L F TE LEP++ +NAL+ D + +M GC P+ SY +ING
Sbjct: 171 LVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILING 229
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V Y +I G +G +L+ ++ E +P++ ++ L++C ++
Sbjct: 495 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ-EKGYDPDVFTYSILIECFGKSNKVEMAC 553
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLE 239
++ M + GC P+ +Y +++ LE
Sbjct: 554 SLFDEMISEGCTPNIVTYNILLDCLE 579
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E+ Y P V Y+ +I+ FG + + L+ + +E P I +N LL CL
Sbjct: 525 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGC-TPNIVTYNILLDCLERRGK 583
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240
+ YE MK G PD +Y +++ LE+
Sbjct: 584 TEEAHKLYETMKQQGLIPDSITY-SILERLES 614
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
+ +EP + +N LLK L D + + LM G PD Y T+++GL ME
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFE 489
Query: 246 FSGIIRQD 253
+ + +D
Sbjct: 490 GASTLWKD 497
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT-ENSLEPEIQGFNALLKCLVGFK 207
KE+ + V +I+ FG G+ + E+L+ + + E+ +EP + FN LL LV
Sbjct: 182 KEKGFLMTVFAANSLIRSFGALGMVE--ELLWVWRRMKESGIEPSLYTFNFLLNGLVNSM 239
Query: 208 LRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ +E+M+ PD SY T+I G
Sbjct: 240 FIESAERVFEVMECGKIGPDVVSYNTMIKG 269
>gi|242069951|ref|XP_002450252.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
gi|241936095|gb|EES09240.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
Length = 406
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+++ KP V++Y+ M+ +GT G + L N + P + FN ++ +
Sbjct: 267 RQKGIKPDVTIYSIMLHGYGTKGALSEMHD-RLNLMVANGISPNHRIFNTMIYAYAKEAM 325
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
D + + MK G PD SY +I+ L + V
Sbjct: 326 IDEAMHIFIKMKQQGLSPDAVSYAELIDALCKLGRV 361
>gi|397646725|gb|EJK77400.1| hypothetical protein THAOC_00772 [Thalassiosira oceanica]
Length = 1197
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234
H EI F+L+T + EPE Q F + L+ + +L V+ + EPD S+
Sbjct: 642 HKEIGMFFLRTAETSEPERQLFGSTLRSIACNQLNMATVESF-------GEPDIESF--A 692
Query: 235 INGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED 267
I L + VA G+ ++ + L FL ED
Sbjct: 693 ILNLSEGKRVASLGLFEASSYHFAMGLHFLGED 725
>gi|449460469|ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
gi|449494249|ref|XP_004159492.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
Length = 514
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
VF D++++ P + Y +I VFG L H+E + N L P + +N+L+
Sbjct: 211 VFRDLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLN-LSPNVNTYNSLIAG 269
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING------LEAMEEV 244
+ + + + MK P+ ++ ++ G LE MEE+
Sbjct: 270 YITAWMWKRMEQAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEM 317
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 118 RLLKFDMIAVLRE-LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
+ LK VL + L + H A+ +F+ I+K + +KP + +++ ++ G +
Sbjct: 1326 QFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE-HKPNIEVFSILLDGMCRAGKLEEA 1384
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ + ++N LEP+ +N L+ L + V M+ GC PD ++ +I
Sbjct: 1385 WKQFDEI-SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 1443
Query: 237 GLEAMEEV 244
L E+
Sbjct: 1444 NLLKENEI 1451
>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 558
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K ED+ KE ++P V Y + I+ +G F+ V+ + ++ EN P + ++
Sbjct: 284 ARKAMEDM-KEHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMR-ENGCPPNAVTYTSV 341
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAFSGI 249
+ L ++ YE MK+ GC D Y ++I + + E++ G+
Sbjct: 342 MLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGV 401
Query: 250 IR 251
+R
Sbjct: 402 VR 403
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C+ A K+F+ + K + KP+++ Y ++Q + T G + L L N +
Sbjct: 311 LCKNGRCMEARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIH 368
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
P+ F+ L+ D + + M+ G P+ +Y VI
Sbjct: 369 PDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414
>gi|402590081|gb|EJW84012.1| hypothetical protein WUBG_05078, partial [Wuchereria bancrofti]
Length = 515
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 133 RQNHCLL-ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSL 189
R C+ AL++++++R E+ + P V Y +I + T +Q FYLK + S+
Sbjct: 245 RNAECITRALEIYKEMR-EKDFVPTVEAYYGLITIAKT---WQEA---IFYLKDMAQKSV 297
Query: 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMK---TVGCEPDRSSY 231
+P I+ FN L++ +L D +++ TVGC+P +Y
Sbjct: 298 KPNIRIFNVLIEKSTSVQLHDQFNTAIKILNEATTVGCKPSLRTY 342
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A + FED++ + P V Y M+ + + E + +K N +EP + + L
Sbjct: 169 ANRFFEDMKSREIM-PDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRN-IEPTVVTYTTL 226
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K V D + E MK G +P+ +Y T++ GL
Sbjct: 227 IKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGL 265
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V Y +I G +G +L+ ++ E +P++ ++ L++C ++
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ-EKGYDPDVFTYSILIECFGKSNKVEMAC 495
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLE 239
++ M + GC P+ +Y +++ LE
Sbjct: 496 SLFDEMISEGCTPNIVTYNILLDCLE 521
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A++R N+ A+++F+++ E P +Y +I G + +K
Sbjct: 491 ALIRAFCNVNNIEKAMELFDEML-EAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMK- 548
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK---TVGCEPDRSSYRTVIN 236
E P+I FN L+ GF ++ + + YE++K G +PD +Y T+I+
Sbjct: 549 EAGFSPDIVSFNVLIN---GFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLIS 599
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL V +++ K +P + + ++ F NG + E ++ +K +N++ P ++ +NA
Sbjct: 143 ALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMK-KNNVAPNVRSYNAK 200
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+ ++ V+ + MKT G +PD + +++ G
Sbjct: 201 LRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGF 239
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN---SLEPEIQGFNALLKC 202
D K + KP Y +I +G G + F ++ E P + +NAL+KC
Sbjct: 553 DEMKRRGIKPDHISYNTLISGYGRRGDIKDA----FRVRDEMLSIGFNPTLLTYNALIKC 608
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + DL + + M G PD S+Y ++I G+
Sbjct: 609 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 127 VLRELLRQNHCLLALKVFED-IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+L L ++ C A K+F+ IRK KP VS+Y ++ + T G + + L
Sbjct: 315 LLDYLCKKGKCTEARKLFDSMIRK--GIKPDVSIYGIILHGYATKGALSEMHS-FLDLMV 371
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
N + P FN + + +D + M+ G P+ +Y T+I+ L
Sbjct: 372 GNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDAL 424
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + V +Y+ +I FG G ++ L + L P + +N L
Sbjct: 671 AYMLFEEA-KSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCL 728
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + + C++ MK + P+ +Y +INGL
Sbjct: 729 LDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGL 767
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C+ A K+ + + K + KP V Y+ ++ + T G + L L N ++
Sbjct: 321 LCKNGRCIEARKILDSMIK-RGLKPNVITYSTLLHGYATKGALVEMRDL-LDLMVRNGIQ 378
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P+ F+ L+ + D+ + + M+ PD +Y T+I+GL
Sbjct: 379 PDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGL 426
>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic [Vitis vinifera]
Length = 723
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K+FED++K + +P Y M+ ++G+ G L+ + +E ++ + G L
Sbjct: 428 AEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEM-SELGVQINVMGCTCL 486
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+CL + D +V +E+ G +PD
Sbjct: 487 SQCLGRARRIDDLVKVFEVSLERGVKPD 514
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V ++ +I G + LY + T +EP +N+L+ L K D
Sbjct: 333 PNVVTFSALIDSLVKEGKLTEAKDLYNEMITR-GIEPNTITYNSLIYGLCNDKRLDEANQ 391
Query: 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+LM + GC+PD +Y +ING ++V
Sbjct: 392 MMDLMVSKGCDPDIWTYNILINGFCKAKQV 421
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFG-TNGLFQHVEILYFYLKTENSLEPEIQGFN 197
LALKVFE++ K+ KP + Y +I+ + G+ + +++L L LEP+ +N
Sbjct: 97 LALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEML--SRGLEPDTFTYN 154
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + L D + + + GC+PD +Y ++ L
Sbjct: 155 VITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRAL 195
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V Y +I G +G +L+ ++ E +P++ ++ L++C ++
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ-EKGYDPDVFTYSILIECFGKSNKVEMAC 495
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLE 239
++ M + GC P+ +Y +++ LE
Sbjct: 496 SLFDEMISEGCTPNIVTYNILLDCLE 521
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
T + P++ FN+L++ L R++ ++ +E MK GC+PD +Y +I L
Sbjct: 399 TSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESL 452
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+ +++R + KP Y+ ++ G I +F+ + P FN++
Sbjct: 468 AIKLLDEMRAKDL-KPDTITYSSLVGGLSREGKVDEA-IKFFHEFERMGVRPNAVTFNSI 525
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVAF 246
+ L + D +D M GC+P +SY +I GL E M + A
Sbjct: 526 MLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEAL 574
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 35/142 (24%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE------------- 177
L + +H ALKV D+ ++ + P V Y ++ NG + +
Sbjct: 204 LCQNDHVGHALKVM-DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 262
Query: 178 ------ILYFYLKTENSLE---------------PEIQGFNALLKCLVGFKLRDLVVDCY 216
L L T N LE P++ FN L+ L L + +
Sbjct: 263 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 322
Query: 217 ELMKTVGCEPDRSSYRTVINGL 238
E MK GC PD +Y T+I+ L
Sbjct: 323 EEMKNSGCTPDEVTYNTLIDNL 344
>gi|356542129|ref|XP_003539523.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g11900-like [Glycine max]
Length = 369
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
VL L H L VF I K + P + Y +I G F LYF TE
Sbjct: 216 VLDILGHTGHMDEMLDVFASI-KNTSFIPDIVSYNTLINGLQKIGRFDMC-FLYFKEMTE 273
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
N +EP++ + AL++ + + C+ MK G P YR++I+ L +V
Sbjct: 274 NGVEPDLLTYTALIEIFGRSGNVEESLKCFREMKLKGVLPSIYIYRSLIHNLTKTGKV 331
>gi|401398381|ref|XP_003880292.1| pentatricopeptide repeat-containing protein At5g55840, related
[Neospora caninum Liverpool]
gi|325114702|emb|CBZ50258.1| pentatricopeptide repeat-containing protein At5g55840, related
[Neospora caninum Liverpool]
Length = 1844
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L+ + AL++FE++++E P +Y+ +I+ F + +Y ++ +N +
Sbjct: 1001 LVSNGRVVEALELFEEMKREGQVLPNTIMYSTIIKGFAQSKQLDKALKMYAEMQ-QNGVA 1059
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
I FN+++ D E M + G +PD ++ T+I G
Sbjct: 1060 INIVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTIIKG 1106
>gi|293334337|ref|NP_001169631.1| uncharacterized protein LOC100383512 [Zea mays]
gi|224030539|gb|ACN34345.1| unknown [Zea mays]
gi|413953501|gb|AFW86150.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 790
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +F D+ + +V +Y +I+++G GL++ + ++ L E Q + A+
Sbjct: 367 ALALFSDMESSKVIPDEV-IYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDE-QTYVAM 424
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256
+ + D ++ E MKT G +P R SY ++ A E+V + +D F+
Sbjct: 425 AQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDV----VAAEDTFR 477
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+ ++ +++ + P + Y ++ F NG++ ++ + + ++ L ++G+N +
Sbjct: 362 AMKLLREM-EDKGFAPSIVTYTILLHSFCRNGMWDNIRAM-LEVMSDKGLSMNLEGYNGM 419
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL---EAMEEVAF 246
+ + + D + + MK+ G +PD +Y T+I L MEE +
Sbjct: 420 ICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEY 469
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 122 FDMIAVLRELLRQNHCLLALKVFEDIRKE---QWYKPQVSLYADMIQVFGTNGLFQHVEI 178
F +LR L+ N L+ E +E + +KP + ++ M+ ++ NG+++
Sbjct: 570 FPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGE 629
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ +K + L P++ +N+++ + +KT +PD SY TV+NG
Sbjct: 630 MFDSIK-QGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGF 688
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF+ ++K++ ++P + Y +++ +G V +Y +K E EP++ + +
Sbjct: 218 AQKVFDKMKKKR-FEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDE-GFEPDVVAYGII 275
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ K D V + M+ C+P + ++INGL
Sbjct: 276 INAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGL 314
>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 81 LQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLA 140
L+RGR EA++ V +K+ +H P HV+ S ++ ++ A
Sbjct: 884 LRRGR--LKEALEKVDSMKQIGIH--PTVHVYTS------------LIVHFFKEKQMRKA 927
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
L+ F+ + KE+ +P + Y+ +I+ G F ++ L+ + P+ + ++ +
Sbjct: 928 LETFQKM-KEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPF-PDFKTYSMFI 985
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
CL + + M G P ++RTV+ GL + + + I+ Q
Sbjct: 986 SCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGKHSLANIVLQ 1037
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA + V+ + R PL + R + + EL +++ L L+VF ++K
Sbjct: 60 EAEELVRGIIRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQK 119
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
++WY +Y+ +I + G G + L+ ++ + P+ +NAL+ + K +
Sbjct: 120 QRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRN-SGCRPDTSVYNALITAHLHSKDK 178
Query: 210 D----LVVDCYELMKTVG-CEPDRSSYRTVINGLEAMEEV 244
V+ +E MK + C+P+ +Y + +V
Sbjct: 179 AKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKV 218
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN---SLEPEIQGFNALLKC 202
D K + KP Y +I +G G + F ++ E P + +NAL+KC
Sbjct: 531 DEMKRRGIKPDHISYNTLISGYGRRGDIKDA----FRVRDEMLSIGFNPTLLTYNALIKC 586
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + DL + + M G PD S+Y ++I G+
Sbjct: 587 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL +F D+ + +V +Y +I+++G GL++ + ++ L E Q + A+
Sbjct: 367 ALALFSDMESSKVIPDEV-IYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDE-QTYVAM 424
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256
+ + D ++ E MKT G +P R SY ++ A E+V + +D F+
Sbjct: 425 AQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDV----VAAEDTFR 477
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + +Y ++ +G + L+ L + L+P +Q + ++ L L D +
Sbjct: 7 KPDLVMYNILVDAMCKSGNLKDARELFSELFVK-GLQPNVQIYTTIINGLCKEGLLDEAL 65
Query: 214 DCYELMKTVGCEPDRSSYRTVINGL 238
+ + M+ GC PD SY +I G
Sbjct: 66 EAFRNMEEDGCPPDEFSYNVIIRGF 90
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EA + V+ + R PL + R + + EL +++ L L+VF ++K
Sbjct: 60 EAEELVRGIIRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQK 119
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
++WY +Y+ +I + G G + L+ ++ + P+ +NAL+ + K +
Sbjct: 120 QRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRN-SGCRPDTSVYNALITAHLHSKDK 178
Query: 210 D----LVVDCYELMKTVG-CEPDRSSY 231
V+ +E MK + C+P+ +Y
Sbjct: 179 AKALVKVLSYFEKMKGMERCKPNIVTY 205
>gi|168063169|ref|XP_001783546.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664933|gb|EDQ51635.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
A++ R N A VFE + K+ +KP V +Y ++ V + G V+ Y +++
Sbjct: 15 ALIDSCGRCNESSKAAVVFETMLKDG-FKPNVFVYNSLMNV--SVGDLDEVQRYYQHMQQ 71
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVIN 236
+ + FN LLK DL D Y ++ G D SY VIN
Sbjct: 72 GAGITGNLASFNILLKAYAACGRADLAADLYFRIQQTGELNLDVVSYNAVIN 123
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V + +I F G F + Y + ++P++ +N+++ L D
Sbjct: 242 PNVITFTALINAFVREGKFLEAKKFYEEM-IRRCIDPDVFTYNSMIHGLCMHGQVDEAKQ 300
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+LM T GC PD +Y T+ING
Sbjct: 301 ILDLMVTKGCFPDVVTYNTLINGF 324
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ E++R+ + KP + Y+ +++ G G I F+ S++P +NA+
Sbjct: 473 AAELLEEMRR-KGLKPDIITYSTLLRGLGCEGKVDEA-IKIFHDMEGLSIKPSAVTYNAI 530
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L + +D M GC+P +++Y +I G+
Sbjct: 531 MLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGFN 197
ALKVF D+ K + +P + Y MI G +G HV+ +F + T L +N
Sbjct: 178 ALKVFLDM-KSRGCRPNIFTYTSMIDGLGKSG---HVDKAFFLFEEMTSEGLVATRVVYN 233
Query: 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+L+ L D + M + G +PD ++ +++ GL
Sbjct: 234 SLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGL 274
>gi|373457412|ref|ZP_09549179.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
gi|371719076|gb|EHO40847.1| response regulator receiver protein [Caldithrix abyssi DSM 13497]
Length = 518
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 205 GFKLRDLVVDCYELMKTVGCEP--------DRSSYRTVINGLEAMEEVA-FSGIIRQDAF 255
G K+ +V+DC L + + EP +R Y +++ A FSG+ +D
Sbjct: 227 GKKVAFIVIDCLRLDQWLSLEPYFSDWFRIEREHYYSILPTATPFSRNALFSGLFPEDIE 286
Query: 256 KYYGDLEFLEEDEEDIAAY 274
KYY DL L ED+E + Y
Sbjct: 287 KYYPDLWSLNEDDESLNRY 305
>gi|297739467|emb|CBI29649.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 140 ALKVFEDIRKEQWYKP---QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196
A++VF+ + K+Q KP V+ Y ++I F NGL E L+ L T+ SL P++ +
Sbjct: 371 AIEVFKKVGKKQGSKPFAMDVAGYNNIIARFCENGLLSEAEQLFGELSTK-SLTPDVNIY 429
Query: 197 NALLKCLVGFKLRD 210
++ G + D
Sbjct: 430 RTFIEAYFGMERAD 443
>gi|223950361|gb|ACN29264.1| unknown [Zea mays]
Length = 465
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
I YF E L+P+ ++ L+ LVGF + D + + MK G P SSY T++
Sbjct: 216 ISYFDKMDELELKPDATAYHKLIDGLVGFSMVDKAQEYFNQMKEKGVNPSISSYETLL 273
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDC---YELMKTVGCEPDRSSYRTVING 237
TE +EP++ +N+L+ G+ + VV+ +++M T GC+PD SY +ING
Sbjct: 212 TEMGVEPDVVTYNSLM---YGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILING 264
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L +Q + A ++F + + + KP + +Y ++ +G + L+ L
Sbjct: 331 LLDGFCKQGYLGKAFRLFRAM-QSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVI 389
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+P +Q + ++ L L D ++ + M+ GC PD SY +I G
Sbjct: 390 -GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGF 440
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP Y IQ + G E + ++ EN + P++ +++L+K +
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMR-ENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAME 242
D + M+ GCEP + ++ ++I L M+
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMK 721
>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K E++ K ++P S Y I+ + F++VE++ + E EP++ ++
Sbjct: 222 ARKTMEEMEK-HGFRPDASSYTCFIKAYCKQKDFRNVEVILNEM-GEKGCEPDVIAYSIY 279
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
++ L + + ++ YE M C+PD + T+I
Sbjct: 280 IRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLI 315
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
R +++ I V R + + A+ +F + E K V + ++ V GL+
Sbjct: 108 RVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRG 167
Query: 177 EILYFYLKTEN---SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
Y Y+ N ++ P FN ++K L + D ++ + M C PD +Y T
Sbjct: 168 LEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCT 227
Query: 234 VINGLEAMEEV 244
+++GL E +
Sbjct: 228 LMDGLCKEERI 238
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
E P ++ Y+ ++Q FG + V L +++ +L P+I +N LL+
Sbjct: 269 NESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNL-PDITSYNVLLEAYAELGS 327
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+D + M+ GC + ++Y ++N
Sbjct: 328 IKEAMDVFRQMQAAGCVANAATYSVLLN 355
>gi|242054629|ref|XP_002456460.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
gi|241928435|gb|EES01580.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
Length = 439
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+++ P + + ++ F N F E ++ +K N +EP+ + +NA L+ LV
Sbjct: 205 EKRGVSPDIISFNILLNGFYNNDSFDDAEKVWEMMKERN-IEPDEKSYNAKLRGLVSQGR 263
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ V E M+ G +PD SY +I G
Sbjct: 264 VEDAVALIERMQKEGPKPDSVSYNELIRG 292
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V ++ MI VFG G + Y + + S++P I +N+L+ L L D
Sbjct: 246 PDVITFSAMIDVFGKEGQLLEAKKQYDEM-IQRSVDPNIVTYNSLINGLCIHGLLDEAKK 304
Query: 215 CYELMKTVGCEPDRSSYRTVING 237
M + G P+ +Y T++NG
Sbjct: 305 VLNFMVSKGFFPNAVTYNTLVNG 327
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
+++ ++ +LA+ +F ++ + Q KP ++ Y +I + NG + + ++
Sbjct: 334 TLIKGFFDESKMMLAIHIFNEMLR-QGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQV 392
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++P ++A+L V Y+ M+ GC PD +YR ++ GL
Sbjct: 393 A-GVKPSEVTYSAMLNGSV-----HEAFSVYDNMEKYGCSPDVYTYRNLLRGL 439
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246
L P++ N +L L + D ++ + M ++GCEP SY TVI+GL +++++
Sbjct: 14 TGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKM-- 71
Query: 247 SGIIRQDAFKYYGDL 261
+A+K++ +
Sbjct: 72 -----DEAYKFFNSM 81
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 14/75 (18%)
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL------------ 238
P+IQ +N L+ D ++ ++L+ + GC+P+ ++Y T+I GL
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356
Query: 239 --EAMEEVAFSGIIR 251
EA++ ++++ +I+
Sbjct: 357 FDEALDVISYTTVIK 371
>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic [Vitis vinifera]
gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
Length = 675
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV 222
M+ + +Q L ++ E S P + +N +++ ++ K +L +E M+
Sbjct: 125 MVSLLSREPDWQRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQR 184
Query: 223 GCEPDRSSYRTVIN--GLEAMEEVAFSGIIRQDAFKYYGDL 261
PDR +Y T+I G E M + A S + + + + GDL
Sbjct: 185 ALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDL 225
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDC 215
V ++ +I+VF N + ++ ++ K + LE + N LLKCL R+ +
Sbjct: 178 SVIVFDLLIKVFAANSMLENAVDVFLQAK-KTGLELSTRSCNFLLKCLAEANRREFLRSL 236
Query: 216 YELMKTVGCEPDRSSYRTVIN 236
+E MK+ G P+ +Y ++N
Sbjct: 237 FEEMKSTGPPPNVFTYTIMMN 257
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL-----YADMIQVFGTNGLFQHVEI 178
M A+L+EL +Q + A+++F+ +R + SL Y MI G++ +
Sbjct: 238 MAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALE 297
Query: 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L +++ ++ + ++AL+ + DL D Y+ M GC P+ +Y +I+
Sbjct: 298 LVAEMRSRG-IDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILID 354
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 118 RLLKFDMIAVLRE-LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
+ LK VL + L + H A+ +F+ I+K + +KP + +++ ++ G +
Sbjct: 387 QFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE-HKPNIEVFSILLDGMCRAGKLEEA 445
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ + ++N LEP+ +N L+ L + V M+ GC PD ++ +I
Sbjct: 446 WKQFDEI-SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 504
Query: 237 GLEAMEEV 244
L E+
Sbjct: 505 NLLKENEI 512
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ P + + +I F G F E LY + + S++P+I +N+L+
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM-IKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D +E M + C PD +Y T+I G
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGF 410
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L + C+ A K+F+ + K + KP+++ Y ++Q + T G + L L N +
Sbjct: 311 LCKNGRCMEARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIH 368
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
P+ F+ L+ D + + M+ G P+ +Y VI
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV 222
+I+VF +N + +H ++ K ++ +E I N LLKCLV D V +E++
Sbjct: 142 LIKVFASNSMLEHANYVFVRAK-DDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKF 200
Query: 223 GCEPDRSSYRTVIN 236
G P+ +Y ++N
Sbjct: 201 GPRPNIHTYTIMMN 214
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+ E L+ N A K++E +++ Y Q+ LY +I F G E L+ +K E
Sbjct: 637 INEYLKLNKNNQAHKLYEKMKERGVYPDQI-LYTMLIAAFCNTGEMNRAEALFDEMKQEG 695
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223
P + + L+ + RD YE M+ G
Sbjct: 696 RCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKG 731
>gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEIL--YFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211
+P + + +I FGT G +H+E L Y ++K E+ P++ ++ L+K K +
Sbjct: 349 EPNLIMLNVLINAFGTAG--KHMEALSIYHHIK-ESGFTPDVVTYSTLMKAFTRAKKYEK 405
Query: 212 VVDCYELMKTVGCEPDRSSYRTVINGL 238
V + + M+ GC DR + + + N
Sbjct: 406 VPEIFREMEASGCTADRKARQLLQNAF 432
>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
+ V Y ++I + T G F+ +L++++ EN + P++ +ALL K D
Sbjct: 380 FSVDVVTYTNIIHGYSTRGNFEEAFLLWYHM-AENCVTPDVVTCSALLSGYCREKRMDEA 438
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ M +G +PD Y T+I+G ++ V
Sbjct: 439 NALFCKMLDIGLKPDLILYNTLIHGFCSVGNV 470
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 107 PLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV 166
P + VFN L+K A LRE VFE +RK Q K + Y +I+V
Sbjct: 357 PGNSVFNVVMACLVKG---AELRE---------TCDVFEILRK-QGVKAGIGAYLALIEV 403
Query: 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP 226
N + + +Y L ++ L + +N ++ C KL D + + M+ G P
Sbjct: 404 LYKNEWREEGDRVYGQLISD-GLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVP 462
Query: 227 DRSSYRTVING 237
+ ++ T+ING
Sbjct: 463 NLVTFNTLING 473
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ P + + +I F G F E LY + + S++P+I +N+L+
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM-IKRSIDPDIFTYNSLVNGFCMHDRL 343
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D +E M + C PD +Y T+I G
Sbjct: 344 DKAKQMFEFMVSKDCFPDVVTYNTLIKGF 372
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 37.4 bits (85), Expect = 7.8, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIR-----KEQWYKPQVSLYADMIQVFGTNGLFQHVEI 178
+ A+L+EL + H A ++F+ +R + + Y MI GT +
Sbjct: 157 LAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALE 216
Query: 179 LYFYLKTENSLEPEIQGFNALLK-CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
L +++ ++ + ++AL+ C+ G +L DL +D Y M GC P+ +Y T+I+
Sbjct: 217 LVAEMRSR-GIQCNVHTYSALMNVCIKGNEL-DLALDVYRQMLAEGCTPNLVTYNTLID 273
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
AV+R QN L ALK+F ++ E +K + Y MI+ G +G F+ +E + ++
Sbjct: 12 AVIR---YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMR- 67
Query: 186 ENSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+N ++G + G K + V+ +E M CEP SY ++N L
Sbjct: 68 KNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNIL 121
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++ L + + L A+++F+++ + P V Y +I F G F ++ L T
Sbjct: 189 TLINALAKSGNLLDAVELFDEM-SVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLT 247
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
E+S+ P ++ +N ++ L D ++ + MK PD ++ ++I+GL
Sbjct: 248 ESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGL 300
>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 503
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 79 KPLQRGRNLSIEAIQAVQHL-KRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHC 137
+P ++ N + EA + V+ L + PL N +++ + EL + ++
Sbjct: 30 RPKRKKSNHNSEAQELVRLLTSKISNDKEPLLKTLNKYVKQVRTQHCFLLFEELAKHDNW 89
Query: 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGF 196
L L+VF ++K++WY +Y+ +I V G G Q ++ + + N+ P+ +
Sbjct: 90 LQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKG--QTRMAMWLFSEMRNTGCRPDTSVY 147
Query: 197 NALL 200
NAL+
Sbjct: 148 NALI 151
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL F+ + + KP + Y ++ F L + E Y +T L P +Q +N L
Sbjct: 97 ALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGIL-PNLQTYNIL 155
Query: 200 LKCLVGFKLRDLV--VDCYELMKTVGCEPDRSSYRTVINGL 238
+K + K R V + M + +PD SY TVING+
Sbjct: 156 IK--ISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGM 194
>gi|388490582|gb|AFK33357.1| unknown [Medicago truncatula]
Length = 389
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212
+ P Y+ +I+ G+ + F + E+ P + +NAL+ L + D+
Sbjct: 264 FTPDSYTYSSLIRGMCREGMLDEA-LQIFGILEEHGYVPHVDNYNALILGLCKSQRIDMS 322
Query: 213 VDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255
++ +++M GC P+ +Y + L EE+ + + + +
Sbjct: 323 IEIFQMMVNKGCMPNEMTYNIFVEALAFEEEMELAATLLNELY 365
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
T + P++ FN+L++ L + + ++ +E M++ GCEPD +Y +I+ L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
T + P++ FN+L++ L + + ++ +E M++ GCEPD +Y +I+ L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
AV+R QN L ALK+F ++ E +K + Y MI+ G +G F+ +E + ++
Sbjct: 12 AVIR---YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMR- 67
Query: 186 ENSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVIN 236
+N ++G + G K + V+ +E M CEP SY ++N
Sbjct: 68 KNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMN 119
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE++++ P V Y +I F GL Q +F P + + AL
Sbjct: 479 AFSLFEEMKRNGIV-PSVYTYTILIDSFCKAGLIQQAR-KWFDEMLHKGCTPNVVTYTAL 536
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ + K + + +E+M GC+P+ +Y +I+G
Sbjct: 537 IHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDG 574
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++ E++R+ + KP + Y+ +++ G G I F+ S++P +NA+
Sbjct: 472 AVELLEEMRR-KGLKPDIITYSTLLRGLGREGKVDEA-IKIFHDMEGLSIKPSAVTYNAI 529
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L + +D M GC+P ++Y +I G+
Sbjct: 530 MLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568
>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 635
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVL-RELLRQNHCLLALKVFEDIR 148
E + V+ L R PL N K+ +L++ + +L EL + + L L+VF ++
Sbjct: 50 ETQELVRLLTRKISDKEPLLKTLN-KYVKLVRTEHCFLLFEELGKHDKWLQCLEVFRWMQ 108
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF-- 206
+++WY +Y+ +I V G G + L+ ++ P+ +N+L+ +
Sbjct: 109 RQRWYIADNGVYSKLISVMGKKGQIRLAMWLFSEMR-NTGCRPDTSVYNSLISAHLHSRD 167
Query: 207 KLRDLV--VDCYELMKTVG-CEPDRSSYRTVINGLEAMEEV 244
K + LV + +E MKT C+P+ +Y ++ +V
Sbjct: 168 KSKALVKALGYFEKMKTTERCKPNIVTYNILLRAFAQARDV 208
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+++F I KE P V +Y ++ Q + ++Y +K + EP + +N L
Sbjct: 130 AVEMFYRI-KEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK-RDGFEPNVFTYNVL 187
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
LK L D M GC PD SY TVI+ +
Sbjct: 188 LKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSM 226
>gi|395853509|ref|XP_003799249.1| PREDICTED: pentatricopeptide repeat-containing protein 3,
mitochondrial [Otolemur garnettii]
Length = 555
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 22/115 (19%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQ------VFGTNGLFQHVEI---LYFYLKTENSLE--- 190
V + K + Y+P ++LY +++ VF N L + + + F K +LE
Sbjct: 122 VIRGMVKHRAYEPALNLYTELLNNRIHADVFTFNALIEATILGLDVDFEEKWNKTLELLK 181
Query: 191 --------PEIQGFNALLKCLVGFKL--RDLVVDCYELMKTVGCEPDRSSYRTVI 235
P +Q FN +LKCL F + + + MK +G EP ++Y +I
Sbjct: 182 QMVAQKVKPNLQTFNTILKCLRRFHVFAKFPALKTLREMKAIGIEPSLATYHHII 236
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
DM VL+E Q A + FE ++ + Y P V Y ++ ++G G E
Sbjct: 76 DMCIVLKE---QRGWRQAREFFEWMKLQIPYSPSVIAYTTLLGIYGQAGKLTLAEETLSE 132
Query: 183 LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+ + +EP+ +L+ ++ D +++ YE M+ G P YRT+I
Sbjct: 133 M-LDAGVEPDEVAGGCMLEAYARWERYDTLLEFYEAMRQRGLVPSAHVYRTMI 184
>gi|1931651|gb|AAB65486.1| membrane-associated salt-inducible protein isolog; 88078-84012
[Arabidopsis thaliana]
Length = 652
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 60 VTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRL 119
AT S VIE+ +R N + A+ ++R+ F S +RL
Sbjct: 41 TAATTSSAVIELPANVAEAPRSKRHSNSYLARKSAISEVQRSS--------DFLSSLQRL 92
Query: 120 LKF----DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH 175
D+ +LR+ +++FE + +Q K VS Y+ I+ G + +
Sbjct: 93 ATVLKVQDLNVILRDFGISGRWQDLIQLFEWM--QQHGKISVSTYSSCIKFVGAKNVSKA 150
Query: 176 VEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
+EI + + S + + N++L CLV D + ++ MK G +PD +Y T++
Sbjct: 151 LEI--YQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLL 208
Query: 236 NG 237
G
Sbjct: 209 AG 210
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,031,454,412
Number of Sequences: 23463169
Number of extensions: 153805905
Number of successful extensions: 430620
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 768
Number of HSP's that attempted gapping in prelim test: 427481
Number of HSP's gapped (non-prelim): 3651
length of query: 275
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 135
effective length of database: 9,074,351,707
effective search space: 1225037480445
effective search space used: 1225037480445
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)