BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023910
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870
OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1
Length = 257
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 75 GQNRKPLQRGRNL-SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLR 133
G+ R PL RG+ L EA+ + LKR LD + RLLK DM+AV+ EL R
Sbjct: 60 GRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELER 119
Query: 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193
Q LA+K+FE I+K++WY+P V +Y D+I + L+ +K EN L P+
Sbjct: 120 QEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKEN-LFPDS 178
Query: 194 QGFNALLKCLVGFKLRDL----VVDCYELMKTVGCEPDRSSYRTVINGL 238
Q + +++ GF LRD ++ YE M P+ +R ++ GL
Sbjct: 179 QTYTEVIR---GF-LRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223
>sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350
OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1
Length = 196
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 87 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFED 146
+S E + A + LKR S LD S RLLK D+++VL E RQN L +K++E
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+R+E WY+P + Y DM+ + N + ++ LK E L + F L++ GF
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVR---GF 116
Query: 207 KLRDLVVDCYELMKTVGCEPDRS---SYRTVINGL 238
+L ++ L + PDR +R ++ GL
Sbjct: 117 LDNELPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRK 149
EAI Q +KR P +N L ++ + + ++ K++ ++R
Sbjct: 247 EAIDVFQRMKRDR--CKPTTETYN------LMINLYG------KASKSYMSWKLYCEMRS 292
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
Q KP + Y ++ F GL + E ++ L+ E+ LEP++ +NAL++
Sbjct: 293 HQC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNALMESYSRAGYP 350
Query: 210 DLVVDCYELMKTVGCEPDRSSYRTVIN-----GLEAMEEVAFSGIIR 251
+ + LM+ +GCEPDR+SY +++ GL + E F + R
Sbjct: 351 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR 397
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216
+S Y +I ++G G + +E L+ LK +N P++ + + + KL ++ +
Sbjct: 474 ISTYNILINIYGKAGFLERIEELFVELKEKN-FRPDVVTWTSRIGAYSRKKLYVKCLEVF 532
Query: 217 ELMKTVGCEPDRSSYRTVINGLEAMEEV 244
E M GC PD + + +++ + E+V
Sbjct: 533 EEMIDSGCAPDGGTAKVLLSACSSEEQV 560
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG---FNALLKCLVGF 206
E Y P YA +I+ + GL + E++ ++ + + P+ G +NA ++ L+
Sbjct: 183 ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHH-VSPKTIGVTVYNAYIEGLMKR 241
Query: 207 KLR-DLVVDCYELMKTVGCEPDRSSYRTVIN 236
K + +D ++ MK C+P +Y +IN
Sbjct: 242 KGNTEEAIDVFQRMKRDRCKPTTETYNLMIN 272
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 113 NSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL 172
+ K+ L ++ L E +++N ALK+F +RK+ WY+P+ Y + +V G
Sbjct: 50 SEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQ 109
Query: 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSY 231
+L+ + +E L+P I + +L+ +L D E MK+V C+PD ++
Sbjct: 110 PDQASLLFEVMLSEG-LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTF 168
Query: 232 RTVIN 236
+I+
Sbjct: 169 TVLIS 173
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
L +L+ + L AL+VF+ +R++ +Y+P+ Y ++ + G +G + L+ + E
Sbjct: 94 TLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM-LE 152
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVING 237
LEP ++ + ALL L D + MK+ C+PD +Y T++
Sbjct: 153 EGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKA 204
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A K+F+++ E+ +P V LY ++ + + L + +K+ +P++ ++ L
Sbjct: 143 AQKLFDEML-EEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTL 201
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
LK V DLV Y+ M P+ + V++G
Sbjct: 202 LKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSG 239
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 31 GIMMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIE 90
GI SS+A + S KP T+ + + + D GQ+ + +N +
Sbjct: 14 GIFKESSIATAKS-----AKPRSQTKSTKFPSKLKASTASVGDGGQSSNDAKDSKNSKL- 67
Query: 91 AIQAVQHLKRAHLHSNPLDHV---FNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDI 147
Q V+ KR+ S V +++ RRL + + + E+L+ K F+DI
Sbjct: 68 -TQKVEKFKRS-CESESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQ------KKFDDI 119
Query: 148 RKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207
+ E + ++ ++G +G+ +H L+ + E + E ++ FNALL V K
Sbjct: 120 KSEDFV-------IRIMLLYGYSGMAEHAHKLFDEM-PELNCERTVKSFNALLSAYVNSK 171
Query: 208 LRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
D + + EL + +G PD +Y T+I L
Sbjct: 172 KLDEAMKTFKELPEKLGITPDLVTYNTMIKAL 203
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 76/155 (49%), Gaps = 11/155 (7%)
Query: 91 AIQAVQHLKRAHLHSNPLDHVFNSKFRRL-----LKFDMIA---VLRELLRQNHCLLALK 142
+++ L A+++S LD + F+ L + D++ +++ L R+ L
Sbjct: 156 TVKSFNALLSAYVNSKKLDEAMKT-FKELPEKLGITPDLVTYNTMIKALCRKGSMDDILS 214
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+FE++ K ++P + + +++ F LF + ++ +K++N L P I+ +N+ ++
Sbjct: 215 IFEELEK-NGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKN-LSPNIRSYNSRVRG 272
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
L K ++ ++MKT G PD +Y +I
Sbjct: 273 LTRNKKFTDALNLIDVMKTEGISPDVHTYNALITA 307
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D+ K + P + Y ++ N F L +KTE + P++ +NAL+
Sbjct: 252 DLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEG-ISPDVHTYNALITAYRV 310
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSY 231
+ V+ CY MK G PD +Y
Sbjct: 311 DNNLEEVMKCYNEMKEKGLTPDTVTY 336
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160,
mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1
SV=1
Length = 394
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS---LYADMIQVFGTNGLFQHVEILYF 181
IAV +R+ + E+I +EQ P +S A +I ++G G+F++ + ++
Sbjct: 71 IAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFD 130
Query: 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY-ELMKTVGCEPDRSSYRTVINGL 238
+ N + FNALL V K DLV + EL + EPD +SY T+I GL
Sbjct: 131 EMPERNCKRTALS-FNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGL 187
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A KVF+++ + + +S A ++ + F VE ++ L + S+EP++ +N L
Sbjct: 125 AQKVFDEMPERNCKRTALSFNA-LLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTL 183
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+K L G V + ++ G +PD ++ +++
Sbjct: 184 IKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLH 220
>sp|O23278|PP310_ARATH Pentatricopeptide repeat-containing protein At4g14190,
chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2
SV=2
Length = 501
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
++R L + A++ F + + P + +Y +I + +G F+ + Y E
Sbjct: 137 IIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEA-MFYLNHMKE 195
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
N L P + ++ L++ +K+ D +V C + M++ GC D +Y +I
Sbjct: 196 NGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLI 244
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 37/197 (18%)
Query: 76 QNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN 135
++ K ++ +N I + +A+ + R + ++ SK +LL ++ L E +
Sbjct: 71 RDSKEIKEDKNTKIASRKAISIILRREATKSIIEKKKGSK--KLLPRTVLESLHERITAL 128
Query: 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT-------------------------- 169
A++VFE +R++ WYKP V +Y +I + G
Sbjct: 129 RWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVY 188
Query: 170 ---------NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220
+G F L +K+ ++ +P++ ++ L+K + D V D M+
Sbjct: 189 TALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMR 248
Query: 221 TVGCEPDRSSYRTVING 237
G P+ +Y T+I+
Sbjct: 249 RQGIRPNTITYNTLIDA 265
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
+ D+R+ Q +P Y +I +G +F +E + E+ +P+ N+ L+
Sbjct: 243 LLSDMRR-QGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRA 301
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING-------------LEAMEEVAFSGI 249
G +++ +CYE ++ G EP+ ++ +++ +E M++ +S
Sbjct: 302 FGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWT 361
Query: 250 IRQ-----DAFKYYGDLEFLE 265
I DAF GDL+ +E
Sbjct: 362 IVTYNVVIDAFGRAGDLKQME 382
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL--EPEIQGFN 197
A+K+ E++ E +KP+ Y I F G+ L+ ++ T+ S P + F
Sbjct: 287 AMKLLEEM-IEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF- 344
Query: 198 ALLKCLVGFKLRDLVVDCYEL---MKTVGCEPDRSSYRTVINGLEAMEEV 244
AL+ +V D +C+EL M + GC PD S+Y+ VI G+ E+V
Sbjct: 345 ALM--IVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKV 392
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 108 LDHVFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI 164
LD V NS R D I +L R ++ A+KVFED+ + +P + Y MI
Sbjct: 285 LDMVRNSGLRP----DAITYNTLLSACSRDSNLDGAVKVFEDMEAHRC-QPDLWTYNAMI 339
Query: 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224
V+G GL E L+ L+ + P+ +N+LL + + V + Y+ M+ +G
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFF-PDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF 398
Query: 225 EPDRSSYRTVIN 236
D +Y T+I+
Sbjct: 399 GKDEMTYNTIIH 410
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177
++ K ++ +L R + K++ + K Y P + LY MI++ + E
Sbjct: 854 KISKSSILLMLDAFARAGNIFEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235
I+ ++ N + E+ +N++LK + V Y+ +K G EPD ++Y T+I
Sbjct: 913 IMVSEMEEAN-FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLI 969
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGT-NGLFQHVEILYFYLKTENSLEPEIQGFNA 198
AL+VFE + W+ P + A ++ V G N VEI + + E ++ +Q +NA
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEI---FTRAEPTVGDRVQVYNA 230
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN------------GLEAMEEVAF 246
++ + + M+ GC PD S+ T+IN +E ++ V
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRN 290
Query: 247 SGIIRQDAFKY 257
SG +R DA Y
Sbjct: 291 SG-LRPDAITY 300
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+ +FE++ + KP + Y +I G NG + + ++ E L P++ ++ L
Sbjct: 496 AINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTL 553
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239
++C + ++ +E M GC+P+ +Y +++ LE
Sbjct: 554 MECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLE 593
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +VFED++K + + + Y MI+ G G L+ + TE L + G+N L
Sbjct: 254 ACQVFEDMKKRHCRRDEYT-YTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTL 311
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE-VAFSGII 250
++ L K+ D + + M GC P+ +Y ++N L A + V G++
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVV 363
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILY--FYLKTENSLEPEIQGFNALLKCLVGF 206
+E+ P V Y+ +++ FG + VE+ Y F +P I +N LL CL
Sbjct: 539 QEKGLNPDVVTYSTLMECFGKT---ERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKN 595
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241
VD Y MK G PD +Y TV+ L+++
Sbjct: 596 GRTAEAVDLYSKMKQQGLTPDSITY-TVLERLQSV 629
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184
+++L L + A+++ I E+ +Y + G H+ L+ +K
Sbjct: 411 MSMLESLCGAGKTIEAIEMLSKIH-EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK 469
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ P+I +N L+ D ++ +E ++ C+PD SY ++IN L
Sbjct: 470 KDGP-SPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCL 522
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE 190
L R+ LL++++ ++IR + Y+ L +I +G GL ++ ++ + ++
Sbjct: 120 LFRKGPLLLSMELLKEIR-DSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFL-GMK 177
Query: 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
P + +NA++ LV DL ++ M++ GC+PDR +Y +I+G+
Sbjct: 178 PSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGV 225
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAH-LHSNPLDHVFNSKFRRLLKFD 123
+M + EM+DRG + + LS +++ +K+ H + L H F ++ F
Sbjct: 445 AMFLTEMQDRGISPNLVTFNTFLSGYSVRG--DVKKVHGVLEKLLVHGFKPD---VITFS 499
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+I + L R A F+++ E +P Y +I+ + G L+ +
Sbjct: 500 LI--INCLCRAKEIKDAFDCFKEML-EWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKM 556
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT---VGCEPDRSSYRTVI----- 235
K EN L P++ +NA ++ K+R V EL+KT +G +PD +Y T+I
Sbjct: 557 K-ENGLSPDLYAYNATIQSFC--KMRK-VKKAEELLKTMLRIGLKPDNFTYSTLIKALSE 612
Query: 236 NGLEAMEEVAFSGIIRQ 252
+G E+ FS I R
Sbjct: 613 SGRESEAREMFSSIERH 629
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL++ ++ +Q +P V ++ +I+ F G F+ L ++ E +EP+ FN L
Sbjct: 221 ALQLLDEF-PQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER-IEPDTITFNIL 278
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L + +D E MK GCEP+ +Y+ V+ GL
Sbjct: 279 ISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGL 317
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
L ++ K + Y+P SLYA MI FG ++ +E + +K E + F L+
Sbjct: 79 LPAYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLM 138
Query: 201 KCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ R + ++ M GC P S+ ++N L
Sbjct: 139 RIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLL 177
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V + +I VF G F LY + T ++P++ +N+L+ L D
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRCVDPDVFTYNSLINGLCMHGRVDEAKQ 300
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+LM T GC PD +Y T+ING
Sbjct: 301 MLDLMVTKGCLPDVVTYNTLINGF 324
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH-VEILYFYLK 184
+V+ L R+ + A ++ ++ + + P Y+ +I+ G+F +E+L +
Sbjct: 428 SVITSLCRKGNTFAAFQLLYEMTR-CGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEE 486
Query: 185 TENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL------ 238
+EN +P + FNA++ L + DL ++ +E+M P+ ++Y ++ G+
Sbjct: 487 SENC-KPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDEL 545
Query: 239 ----EAMEEVAFSGIIRQDA 254
E ++E+ +I Q+A
Sbjct: 546 ELAKEVLDELRLRKVIGQNA 565
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 90 EAIQAVQHLKRAHL-----HSNPLDHVF-----NSKFRRLLKFDMIA------------V 127
EAIQ +KR + N L H F +R K DMI +
Sbjct: 210 EAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFK-DMIGAGARPTVFTYNIM 268
Query: 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN 187
+ + ++ A +FE++ K + P Y MI FG G + +F +
Sbjct: 269 IDCMCKEGDVEAARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDT-VCFFEEMKDM 326
Query: 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS 247
EP++ +NAL+ C F + ++ Y MK G +P+ SY T+++
Sbjct: 327 CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF------CKE 380
Query: 248 GIIRQDAFKYYGDL 261
G+++Q A K+Y D+
Sbjct: 381 GMMQQ-AIKFYVDM 393
>sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240
OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
Length = 497
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL F+ +++ KP V +Y ++ + +G Y + E + +P++ FN L
Sbjct: 176 ALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERA-KPDVCTFNIL 234
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ DL +D + MK GCEP+ S+ T+I G
Sbjct: 235 INGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGF 273
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL+ FED+ K + P + + MI F E L+ +K N + P + + +
Sbjct: 274 ALRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKG-NKIGPSVVSYTTM 331
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K + D + +E M++ G EP+ ++Y T++ GL
Sbjct: 332 IKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGL 370
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY 182
D++A+ +++ R +K FE + VS +I+ FG G+ + E+L+ +
Sbjct: 160 DVLALAKDVDRIRFVSSEIKKFE-------FPMTVSAANALIKSFGKLGMVE--ELLWVW 210
Query: 183 LKT-ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
K EN +EP + +N L+ LV D +E+M++ +PD +Y T+I G
Sbjct: 211 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKG 266
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 127 VLRELLRQNHCLLALKVFE---DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
+LR LL N AL E + K+ YKP + ++ M+ +F N ++ E + +
Sbjct: 598 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---GCEPDRSSYRTVINGL 238
+ E+ L P++ +N+L+ V R E++KT+ +PD SY TVI G
Sbjct: 658 R-EDGLSPDLVTYNSLMDMYV---RRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGF 711
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 120 LKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
LKFD VL R+ A + F ++ K Y+P Y ++QVFG G++
Sbjct: 277 LKFDEFTCSTVLSACAREGLLREAKEFFAEL-KSCGYEPGTVTYNALLQVFGKAGVYTEA 335
Query: 177 EILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236
+ ++ ENS + +N L+ V E+M G P+ +Y TVI+
Sbjct: 336 LSVLKEME-ENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVID 394
Query: 237 G 237
Sbjct: 395 A 395
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F + KE P Y ++ + G + + +K+ N P +N +
Sbjct: 405 ALKLFYSM-KEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKS-NGCSPNRATWNTM 462
Query: 200 LKCLVGFKLRDLVVD-CYELMKTVGCEPDRSSYRTVINGL-EAMEEVAFSGIIRQDAFKY 257
L L G K D V+ + MK+ G EPDR ++ T+I+ EV DA K
Sbjct: 463 L-ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEV--------DASKM 513
Query: 258 YGDL 261
YG++
Sbjct: 514 YGEM 517
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
KE KP V Y ++ G NG Q I F + P FN L CL
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEA-IELFEGMVQKGCPPNTITFNTLFDCLCKNDE 623
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L + M +GC PD +Y T+I GL
Sbjct: 624 VTLALKMLFKMMDMGCVPDVFTYNTIIFGL 653
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
+P ++Y +I FG G L+ + E + P+++ ++ L+ CL D +
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKE-GVRPDLKTYSVLVDCLCMVGRVDEGL 981
Query: 214 DCYELMKTVGCEPDRSSYRTVINGL 238
++ +K G PD Y +INGL
Sbjct: 982 HYFKELKESGLNPDVVCYNLIINGL 1006
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183
++ ++R + N+ A +FE K+ +P++ Y +I + + + ++ +
Sbjct: 752 LVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQV 811
Query: 184 KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243
K+ + P++ +N LL D + + Y+ M T CE + ++ VI+GL
Sbjct: 812 KSTGCI-PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGN 870
Query: 244 VAFSGIIRQDAFKYYGDL 261
V DA Y DL
Sbjct: 871 V-------DDALDLYYDL 881
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
L F+++ KE P V Y +I G + + +L+ +KT + P++ +N+L
Sbjct: 980 GLHYFKEL-KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237
+ L + + Y ++ G EP+ ++ +I G
Sbjct: 1039 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRG 1076
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A +FE+ K + + V +Y+ +I FG G ++ L + L P + +N+L
Sbjct: 641 AYMLFEEA-KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL-MQKGLTPNLYTWNSL 698
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L LV + + + C++ MK + C P++ +Y +INGL
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGL 737
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 35/192 (18%)
Query: 90 EAIQAVQHLKRAHLHSNPLDHVFNS---KFRRLLKFDMIAVLRELLRQN---------HC 137
EA++ +HL++ P + +N+ + KFD L E R +C
Sbjct: 291 EAVEMFEHLEKNR--RVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348
Query: 138 LL-----------ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+L ALKVFE+++K+ P +S Y +I + G L ++ +
Sbjct: 349 ILTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFELRDSMQ-K 405
Query: 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246
L P ++ N ++ L + D +E M C PD ++ ++I+GL + V
Sbjct: 406 AGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRV-- 463
Query: 247 SGIIRQDAFKYY 258
DA+K Y
Sbjct: 464 -----DDAYKVY 470
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++F+++ KE + +YA MI+ FG G L+ +K + S P++ +NAL
Sbjct: 463 ANELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS-GPDVYAYNAL 520
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING----------LEAMEEVAFSGI 249
+ +V + + M+ GC D +S+ ++NG +E E + SG
Sbjct: 521 MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSG- 579
Query: 250 IRQDAFKY 257
I+ D Y
Sbjct: 580 IKPDGVTY 587
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL-----EPEIQGF 196
+VFE ++ + +K Y I FG G L+ +K +S+ P+I +
Sbjct: 233 RVFEKLKGMKRFKFDTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTY 292
Query: 197 NALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254
N+L+ CL G K +D ++ ++ +K G EPD S+YR +I G + DA
Sbjct: 293 NSLIHVLCLFG-KAKDALI-VWDELKVSGHEPDNSTYRILIQGCCKSYRM-------DDA 343
Query: 255 FKYYGDLEF 263
+ YG++++
Sbjct: 344 MRIYGEMQY 352
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK--TENSLEPEIQGF 196
LAL+V D+R + KP V Y ++ F G ++ Y L + + L+P GF
Sbjct: 407 LALEVLHDMRNKGC-KPNVYSYTILVDGFCKLG---KIDEAYNVLNEMSADGLKPNTVGF 462
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
N L+ V+ + M GC+PD ++ ++I+GL ++E+
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 146 DIRKEQWY---KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202
D K+ +Y KP++ ++ +I F T+G + + + T + P++ +N+L+
Sbjct: 339 DAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 398
Query: 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L L ++ M+ GC+P+ SY +++G
Sbjct: 399 YWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGF 434
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E+ + P Y +I++ + +H +Y + +N +EP I FN ++K +
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM-IQNEIEPSIHTFNMIMKSYFMARN 488
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ +E M G PD +SY +I GL
Sbjct: 489 YEMGRAVWEEMIKKGICPDDNSYTVLIRGL 518
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 111 VFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
++N + LK D++A +L LLR A+K+F + K + P V Y MI+ F
Sbjct: 320 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFH-VMKSKGPCPNVRSYTIMIRDF 378
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTV---G 223
+ I YF ++ L+P+ A+ CL+ GF + + YEL+K + G
Sbjct: 379 CKQSSME-TAIEYFDDMVDSGLQPDA----AVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 224 CEPDRSSYRTVI 235
PD +Y +I
Sbjct: 434 HPPDGKTYNALI 445
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 19/113 (16%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNG-------LFQHVEILYFYLKTENSLEPEIQGFNALLK 201
K++ KP + Y I G + +E L ++P I+ + L+K
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL--------GVKPNIKTYTTLIK 807
Query: 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA----FSGII 250
L + + CYE MK +G +PD++ Y ++ L + +A +SG++
Sbjct: 808 GWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 860
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVF-GTNGLFQHVEILYFYLK-----TENSLEPEI 193
A VFED+ KE KP V LY ++I F G + + ++ + K T + P I
Sbjct: 538 AFAVFEDMVKEG-MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEE 243
G+ G R L V +++M+ GC P ++ +INGL E ++E
Sbjct: 597 HGY-----AKSGDMRRSLEV--FDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 244 VAFSGI 249
+ +G+
Sbjct: 650 MTLAGV 655
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK---TENSLEPEIQGF 196
ALKVF+ + KE P Y+ +I G + F LK E +P + +
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEA----FGLKDQMGEKGCQPSTRTY 304
Query: 197 NALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
L+K L L D + ++ M GC+P+ +Y +I+GL
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGL 346
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
AL VF+ +R+ +P + Y ++ F + VE L+ Y +T + P +Q +N L
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVL 155
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+K K + + M G +PD SY TVIN L
Sbjct: 156 IKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDL 194
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200
+K+F++I P + + ++ VFG NG+ V ++ +K PE + FN L+
Sbjct: 439 MKIFDEINV-CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK-RAGFVPERETFNTLI 496
Query: 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ + Y M G PD S+Y TV+ L
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 74 RGQNRKPLQRGRN-----------LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRL--- 119
R +NR + + R+ LS + Q ++ L + S LD V + F
Sbjct: 71 RNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDK 130
Query: 120 ---LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV--SLYADMIQVFGTNGLFQ 174
+++A L+ L LAL+ F+ K++ Y+ + S+ A +I + G G
Sbjct: 131 PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVS 190
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234
++ L+ E+ ++ + +L+ V+ ++ M+ GC+P +Y +
Sbjct: 191 SAANMFNGLQ-EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVI 249
Query: 235 IN 236
+N
Sbjct: 250 LN 251
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 116 FRRLLKFDMIAVLRELL-RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174
++ +L ++A++ +L ++ A +F + +E + V Y +I F +G ++
Sbjct: 167 YQSMLDNSVVAIIISMLGKEGRVSSAANMFNGL-QEDGFSLDVYSYTSLISAFANSGRYR 225
Query: 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRT 233
+ F E+ +P + +N +L + + E MK+ G PD +Y T
Sbjct: 226 EA-VNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNT 284
Query: 234 VI 235
+I
Sbjct: 285 LI 286
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 150 EQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209
E+ P V + +I F G E L+ + + S++P I +N+L+ GF +
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM-IQRSIDPNIVTYNSLIN---GFCMH 358
Query: 210 DLVVDC---YELMKTVGCEPDRSSYRTVINGL 238
D + + + LM + C PD +Y T+ING
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185
++ + + C A VF+ + + + P + Y ++ NG + +++ YL+
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVH-PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ- 477
Query: 186 ENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAM 241
++ +EP+I +N + + C G K+ D D + + G +PD +Y T+I+G + +
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAG-KVED-GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535
Query: 242 EEVAFSGIIR 251
+E A++ I+
Sbjct: 536 KEEAYTLFIK 545
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
E +P+ F L+ L V E M GC+PD +Y VINGL
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL 215
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A+K+ +++R + KP Y+ ++ G I +F+ + P FN++
Sbjct: 468 AIKLLDEMRAKDL-KPDTITYSSLVGGLSREGKVDEA-IKFFHEFERMGIRPNAVTFNSI 525
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL--EAMEEVAF 246
+ L + D +D M GC+P+ +SY +I GL E M + A
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF-QHVEILYFYLKT 185
+LR + + A K+ D+ + + + P V + +I GL + ++IL
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLR-KGFSPSVVTFNILINFLCRKGLLGRAIDILEKM--P 371
Query: 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ +P +N LL K D ++ E M + GC PD +Y T++ L
Sbjct: 372 QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+D+ P +Y +I F G F L +K + + P ++ +NAL
Sbjct: 635 ALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK-MVRPNVETYNAL 693
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
KCL + ++ + M CEP++ + ++ L +E+
Sbjct: 694 FKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELV 739
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
ALK+F+D+ P +Y +I F G F L +K + + P ++ +NAL
Sbjct: 635 ALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK-MVRPNVETYNAL 693
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245
KCL + ++ + M CEP++ + ++ L +E+
Sbjct: 694 FKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELV 739
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 108 LDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
+D V NS R + + ++REL R+ L + VF+ ++ ++ Y + +Y MI++
Sbjct: 94 VDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLH 153
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227
+ L+F ++ + S +P+ + ++AL+ ++ + M P
Sbjct: 154 ARHNWVDQARGLFFEMQ-KWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPS 212
Query: 228 RSSYRTVING 237
RS+Y +IN
Sbjct: 213 RSTYNNLINA 222
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 153 YKPQVS--LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210
Y P +S L M+ +FG +G + + L FY + + ++ + LL+ L+
Sbjct: 699 YLPSLSIGLTNQMLHLFGKSGKVEAMMKL-FYKIIASGVGINLKTYAILLEHLLAVGNWR 757
Query: 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252
++ E M G +P YR +I+ E + F +IRQ
Sbjct: 758 KYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQ 799
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186
+ EL + + L L+VF ++K++WY P +Y+ +I V G G Q ++ + + +
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKG--QTRMAMWLFSEMK 160
Query: 187 NS-LEPEIQGFNALL 200
NS P+ +NAL+
Sbjct: 161 NSGCRPDASVYNALI 175
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 146 DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205
D+ K + P V Y ++ + G F+ V + ++ EN P + + ++ L
Sbjct: 297 DLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR-ENGCNPNVVTYTIVMHSLGK 355
Query: 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL----------EAMEEVAFSGIIRQDAF 255
K + YE MK GC PD Y ++I+ L E E++ G +R+D
Sbjct: 356 SKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG-VRRDVL 414
Query: 256 KY 257
Y
Sbjct: 415 VY 416
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K++ P V Y+ ++ F NG + L+ + S++P+I +++L
Sbjct: 244 AARLLSDMIKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEM-VRMSIDPDIVTYSSL 301
Query: 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
+ L D ++LM + GC D SY T+ING
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199
A ++ D+ K + P V + +I F G LY + S+ P + +N+L
Sbjct: 238 AARLLRDMVKRKI-DPNVIFFTALIDTFVKEGNLLEARNLYKEM-IRRSVVPNVFTYNSL 295
Query: 200 LKCLVGFKLRDLVVDC---YELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAF 246
+ GF + + D ++LM + GC PD +Y T+I +G++ E+ +
Sbjct: 296 IN---GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 352
Query: 247 SGIIRQDAFKY 257
G++ DAF Y
Sbjct: 353 QGLV-GDAFTY 362
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206
+ KE+ P Y +I F G V I + + P+I +N +L L
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLD-VAIEFLETMISDGCLPDIVNYNTVLATLCKN 416
Query: 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
D ++ + + VGC P+ SSY T+ + L
Sbjct: 417 GKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V + +I F G F E LY + S+ P I + +L+ GF + V
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEM-IRMSIAPNIFTYTSLIN---GFCMEGCVD 299
Query: 214 DC---YELMKTVGCEPDRSSYRTVINGL 238
+ + LM+T GC PD +Y ++ING
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGF 327
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214
P V ++ +I + G V+ +Y + + S++P + +++L+ L D +
Sbjct: 261 PNVITFSALIDAYAKRGKLSKVDSVY-KMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIK 319
Query: 215 CYELMKTVGCEPDRSSYRTVINGL 238
+LM + GC P+ +Y T+ NG
Sbjct: 320 MLDLMISKGCTPNVVTYSTLANGF 343
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP + +I FG + + Y+K EN ++P++ + L+K L+ V
Sbjct: 616 KPSLLALNSLINAFGEDRRDAEAFAVLQYMK-ENGVKPDVVTYTTLMKALIRVDKFQKVP 674
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
YE M GC+PDR + + + L M++
Sbjct: 675 VVYEEMIMSGCKPDRKARSMLRSALRYMKQT 705
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 65 SMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHS----NPLDHVFNSKFRRLL 120
S L+ RDRG+ +K Q + + ++ + + + N LDH + F R+L
Sbjct: 413 SRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTT-FDRML 471
Query: 121 K--FDMIAVLRELLRQNHC-----LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF 173
+ V L HC ++A ++FE + + P + Y MI +G +
Sbjct: 472 SEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCL-PCATTYNIMINSYGDQERW 530
Query: 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
++ L +K++ L P + L+ + ++C E MK+VG +P + Y
Sbjct: 531 DDMKRLLGKMKSQGIL-PNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNA 589
Query: 234 VING 237
+IN
Sbjct: 590 LINA 593
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
K Q P V + ++ V+G +G F +K+ L+P +NAL+ L
Sbjct: 541 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG-LKPSSTMYNALINAYAQRGL 599
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED- 267
+ V+ + +M + G +P + ++IN G R+DA + + L++++E+
Sbjct: 600 SEQAVNAFRVMTSDGLKPSLLALNSLINAF---------GEDRRDA-EAFAVLQYMKENG 649
Query: 268 -EEDIAAYC 275
+ D+ Y
Sbjct: 650 VKPDVVTYT 658
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP V ++ + G + + +FY E + P + FN+L+K + D V
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEA-LRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244
+ +LM+ G +PD ++ T++N ++ ++
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDM 617
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 99 KRAHLHSNPLDHVFNSKFRRLLKFDMI---AVLRELLRQNHCLLALKVFEDIRKEQWYKP 155
++ H HS L + + + LK D I A++ + A+K+FE + KE KP
Sbjct: 366 RQKHFHS--LLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM-KESGCKP 422
Query: 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDC 215
S + +I+ +G G + L + + L+P + N L++ + + +
Sbjct: 423 TASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNI 482
Query: 216 YELMKTVGCEPDRSSYRTV 234
M++ G +PD ++ T+
Sbjct: 483 VYKMQSYGVKPDVVTFNTL 501
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 37.7 bits (86), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213
KP Y IQ + G E + ++ EN + P++ +++L+K +
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMR-ENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 214 DCYELMKTVGCEPDRSSYRTVINGLEAME 242
D + M+ GCEP + ++ ++I L M+
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMK 721
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 117 RRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176
R +++ I V R + + A+ +F + E K V + ++ V GL+
Sbjct: 108 RVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRG 167
Query: 177 EILYFYLKTEN---SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233
Y Y+ N ++ P FN ++K L + D ++ + M C PD +Y T
Sbjct: 168 LEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCT 227
Query: 234 VINGLEAMEEV 244
+++GL E +
Sbjct: 228 LMDGLCKEERI 238
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E+ + P Y +I++ + +H +Y + +N +EP I FN ++K +
Sbjct: 429 QEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM-IQNEIEPSIHTFNMIMKSYFVARN 487
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ ++ M G PD +SY +I GL
Sbjct: 488 YEMGRAVWDEMIKKGICPDDNSYTVLIRGL 517
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 111 VFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
++N LK D++A +L LLR A+K+F + K + P V Y MI+ F
Sbjct: 319 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFH-VMKSKGPCPNVRSYTIMIRDF 377
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTV---G 223
+ I YF ++ L+P+ A+ CL+ GF + + YEL+K + G
Sbjct: 378 CKQSSME-TAIEYFDDMVDSGLQPDA----AVYTCLITGFGTQKKLDTVYELLKEMQEKG 432
Query: 224 CEPDRSSYRTVI 235
PD +Y +I
Sbjct: 433 HPPDGKTYNALI 444
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 149 KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208
+E+ + P Y +I++ + +H +Y + +N +EP I FN ++K +
Sbjct: 430 QEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM-IQNEIEPSIHTFNMIMKSYFVARN 488
Query: 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGL 238
++ ++ M G PD +SY +I GL
Sbjct: 489 YEMGRAVWDEMIKKGICPDDNSYTVLIRGL 518
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 111 VFNSKFRRLLKFDMIA---VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF 167
++N LK D++A +L LLR A+K+F + K + P V Y MI+ F
Sbjct: 320 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFH-VMKSKGPCPNVRSYTIMIRDF 378
Query: 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV-GFKLRDLVVDCYELMKTV---G 223
+ I YF ++ L+P+ A+ CL+ GF + + YEL+K + G
Sbjct: 379 CKQSSME-TAIEYFDDMVDSGLQPDA----AVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 224 CEPDRSSYRTVI 235
PD +Y +I
Sbjct: 434 HPPDGKTYNALI 445
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE-ILYFYLKTENSLEPEIQGFNA 198
AL +F+ + K Q P Y + Q+ L + IL L ++ +P + + A
Sbjct: 534 ALSLFKGM-KNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEML--DSGCKPGCKTYAA 590
Query: 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258
++ V L VD YE M+ G +P+ Y ++ING A SG++ ++A +Y+
Sbjct: 591 MIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGF------AESGMV-EEAIQYF 643
Query: 259 GDLE 262
+E
Sbjct: 644 RMME 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,660,797
Number of Sequences: 539616
Number of extensions: 3756730
Number of successful extensions: 11369
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 10951
Number of HSP's gapped (non-prelim): 496
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)