Query 023910
Match_columns 275
No_of_seqs 246 out of 2141
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.6E-28 3.5E-33 240.6 19.2 196 38-254 269-488 (697)
2 PLN03218 maturation of RBCL 1; 100.0 2.5E-27 5.4E-32 237.8 25.6 175 67-255 512-711 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 2.6E-27 5.7E-32 237.6 24.6 179 66-257 476-678 (1060)
4 PLN03081 pentatricopeptide (PP 99.9 1.4E-26 3.1E-31 226.9 21.1 161 86-255 204-387 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 1.8E-26 3.9E-31 230.9 19.4 224 8-254 382-651 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 9.9E-26 2.1E-30 225.6 20.8 227 9-256 181-452 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 2.1E-16 4.6E-21 102.2 6.6 49 155-204 1-49 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 2.4E-16 5.3E-21 101.9 6.4 50 191-240 1-50 (50)
9 KOG4422 Uncharacterized conser 99.2 7.3E-10 1.6E-14 99.3 17.4 129 123-257 209-342 (625)
10 PF12854 PPR_1: PPR repeat 99.2 1E-11 2.3E-16 73.2 4.0 32 188-219 2-33 (34)
11 PF12854 PPR_1: PPR repeat 99.2 2.6E-11 5.5E-16 71.5 4.1 33 152-184 2-34 (34)
12 PRK11788 tetratricopeptide rep 99.0 3.4E-08 7.4E-13 90.1 19.9 130 126-260 185-314 (389)
13 PRK11788 tetratricopeptide rep 98.9 1.9E-07 4E-12 85.3 19.1 135 124-261 144-282 (389)
14 TIGR00756 PPR pentatricopeptid 98.8 1.2E-08 2.5E-13 59.9 3.9 33 195-227 2-34 (35)
15 PF13812 PPR_3: Pentatricopept 98.7 2.8E-08 6E-13 58.2 3.9 33 194-226 2-34 (34)
16 TIGR00756 PPR pentatricopeptid 98.7 2.9E-08 6.3E-13 58.1 3.7 35 158-193 1-35 (35)
17 TIGR02917 PEP_TPR_lipo putativ 98.6 5.2E-06 1.1E-10 82.5 20.7 128 126-258 606-733 (899)
18 TIGR02917 PEP_TPR_lipo putativ 98.6 8.2E-06 1.8E-10 81.1 21.8 130 126-260 572-701 (899)
19 KOG4422 Uncharacterized conser 98.6 3.2E-07 6.9E-12 82.7 10.3 97 156-257 206-306 (625)
20 PF13812 PPR_3: Pentatricopept 98.5 2.1E-07 4.5E-12 54.4 3.8 34 157-191 1-34 (34)
21 PF01535 PPR: PPR repeat; Int 98.5 1.5E-07 3.3E-12 53.6 3.1 29 195-223 2-30 (31)
22 TIGR02521 type_IV_pilW type IV 98.4 3.3E-05 7.1E-10 64.0 17.8 134 124-260 68-201 (234)
23 TIGR02521 type_IV_pilW type IV 98.4 2.6E-05 5.7E-10 64.6 17.1 131 126-259 104-234 (234)
24 PF01535 PPR: PPR repeat; Int 98.4 4.2E-07 9.1E-12 51.8 3.1 31 158-189 1-31 (31)
25 PF04733 Coatomer_E: Coatomer 98.3 2.3E-05 4.9E-10 69.2 15.2 141 126-272 136-280 (290)
26 PF08579 RPM2: Mitochondrial r 98.3 8.9E-06 1.9E-10 60.6 10.1 82 159-241 27-117 (120)
27 PF10037 MRP-S27: Mitochondria 98.2 3.7E-05 8.1E-10 70.9 13.0 118 123-241 68-186 (429)
28 PF06239 ECSIT: Evolutionarily 98.1 2.8E-05 6E-10 64.7 10.4 88 156-244 46-154 (228)
29 PF13429 TPR_15: Tetratricopep 98.1 3.3E-05 7.1E-10 67.6 11.2 131 126-260 115-246 (280)
30 PRK15174 Vi polysaccharide exp 98.1 0.00061 1.3E-08 67.0 20.8 130 126-260 115-244 (656)
31 TIGR00990 3a0801s09 mitochondr 98.1 0.00089 1.9E-08 65.3 21.8 131 125-260 369-499 (615)
32 KOG4318 Bicoid mRNA stability 98.0 1.2E-05 2.7E-10 78.1 6.7 100 142-255 11-110 (1088)
33 PF05843 Suf: Suppressor of fo 98.0 0.00023 4.9E-09 62.6 13.8 134 124-261 4-140 (280)
34 TIGR02552 LcrH_SycD type III s 98.0 0.00064 1.4E-08 52.3 14.8 112 157-271 17-128 (135)
35 TIGR00990 3a0801s09 mitochondr 97.9 0.00097 2.1E-08 65.0 18.5 129 126-260 336-465 (615)
36 PRK12370 invasion protein regu 97.9 0.00079 1.7E-08 64.9 17.5 127 127-260 344-473 (553)
37 KOG3081 Vesicle coat complex C 97.9 0.00069 1.5E-08 58.0 14.3 139 128-273 144-287 (299)
38 PF08579 RPM2: Mitochondrial r 97.9 0.00019 4.2E-09 53.6 9.6 79 126-206 30-117 (120)
39 cd00189 TPR Tetratricopeptide 97.9 0.00034 7.3E-09 48.5 10.7 97 160-259 3-99 (100)
40 PF10037 MRP-S27: Mitochondria 97.8 0.00011 2.5E-09 67.7 9.9 103 153-255 62-165 (429)
41 PRK15174 Vi polysaccharide exp 97.8 0.0014 3E-08 64.5 17.5 130 126-261 251-385 (656)
42 PF13429 TPR_15: Tetratricopep 97.8 0.00014 3.1E-09 63.6 9.4 125 126-256 151-276 (280)
43 PF06239 ECSIT: Evolutionarily 97.8 0.00022 4.8E-09 59.4 9.8 84 124-209 50-154 (228)
44 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0014 3.1E-08 48.7 13.3 106 159-264 4-112 (119)
45 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0014 3E-08 60.2 14.6 121 126-255 174-295 (395)
46 PRK10049 pgaA outer membrane p 97.7 0.0036 7.7E-08 62.7 18.7 142 126-271 315-470 (765)
47 PRK15359 type III secretion sy 97.7 0.0037 7.9E-08 49.2 14.6 96 162-260 29-124 (144)
48 KOG3081 Vesicle coat complex C 97.6 0.0058 1.3E-07 52.5 16.1 120 129-260 116-239 (299)
49 PRK10049 pgaA outer membrane p 97.6 0.0053 1.1E-07 61.5 18.5 126 124-256 52-178 (765)
50 PRK09782 bacteriophage N4 rece 97.6 0.007 1.5E-07 62.0 19.0 122 133-261 588-710 (987)
51 PRK11447 cellulose synthase su 97.6 0.0042 9.2E-08 65.0 17.5 129 129-260 277-417 (1157)
52 PRK10747 putative protoheme IX 97.5 0.033 7E-07 51.5 21.4 123 125-256 267-389 (398)
53 PRK09782 bacteriophage N4 rece 97.5 0.0073 1.6E-07 61.8 18.4 127 127-260 548-675 (987)
54 PRK10370 formate-dependent nit 97.5 0.0091 2E-07 49.7 15.9 122 134-260 52-176 (198)
55 PRK14574 hmsH outer membrane p 97.5 0.037 8E-07 55.7 22.6 141 125-269 371-525 (822)
56 PF04733 Coatomer_E: Coatomer 97.5 0.00045 9.7E-09 61.0 8.2 116 130-257 111-230 (290)
57 TIGR00540 hemY_coli hemY prote 97.5 0.0082 1.8E-07 55.6 17.1 130 125-257 267-399 (409)
58 PRK15179 Vi polysaccharide bio 97.5 0.0078 1.7E-07 59.4 17.5 128 126-260 91-220 (694)
59 cd00189 TPR Tetratricopeptide 97.5 0.0025 5.5E-08 43.9 10.6 92 126-221 5-96 (100)
60 PRK11189 lipoprotein NlpI; Pro 97.5 0.015 3.2E-07 51.4 17.7 120 129-255 72-192 (296)
61 TIGR03302 OM_YfiO outer membra 97.5 0.012 2.6E-07 49.8 16.5 133 125-260 74-235 (235)
62 PF09976 TPR_21: Tetratricopep 97.5 0.0084 1.8E-07 47.1 14.3 124 125-254 16-144 (145)
63 TIGR03302 OM_YfiO outer membra 97.4 0.011 2.4E-07 50.0 16.0 136 124-261 36-199 (235)
64 PRK11447 cellulose synthase su 97.4 0.0079 1.7E-07 63.0 17.8 127 126-256 608-739 (1157)
65 PRK14574 hmsH outer membrane p 97.4 0.011 2.4E-07 59.4 18.0 118 130-253 111-228 (822)
66 COG3063 PilF Tfp pilus assembl 97.4 0.013 2.9E-07 49.3 15.3 131 125-261 39-172 (250)
67 KOG4318 Bicoid mRNA stability 97.3 0.00074 1.6E-08 66.1 8.1 106 140-250 188-293 (1088)
68 PF12921 ATP13: Mitochondrial 97.3 0.0041 8.8E-08 47.9 10.8 88 156-243 1-103 (126)
69 KOG1126 DNA-binding cell divis 97.3 0.0042 9.2E-08 59.1 12.1 160 90-259 371-554 (638)
70 TIGR02552 LcrH_SycD type III s 97.3 0.014 3.1E-07 44.6 13.5 104 125-234 21-124 (135)
71 COG4783 Putative Zn-dependent 97.3 0.068 1.5E-06 49.6 19.5 123 133-261 318-441 (484)
72 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.025 5.5E-07 41.8 14.2 99 124-222 5-105 (119)
73 PRK12370 invasion protein regu 97.2 0.016 3.4E-07 55.9 16.0 116 135-257 318-435 (553)
74 PRK15359 type III secretion sy 97.2 0.018 4E-07 45.2 13.5 101 126-232 29-129 (144)
75 PRK11189 lipoprotein NlpI; Pro 97.2 0.028 6.1E-07 49.7 16.0 122 135-260 40-164 (296)
76 PF12895 Apc3: Anaphase-promot 97.1 0.0011 2.4E-08 46.9 5.0 20 163-182 31-50 (84)
77 TIGR00540 hemY_coli hemY prote 97.1 0.018 3.9E-07 53.3 14.2 130 128-261 160-296 (409)
78 KOG1840 Kinesin light chain [C 97.1 0.053 1.2E-06 51.4 17.2 131 126-256 330-478 (508)
79 PRK10803 tol-pal system protei 97.1 0.021 4.7E-07 49.6 13.6 113 157-272 143-261 (263)
80 PF12921 ATP13: Mitochondrial 97.0 0.0091 2E-07 46.0 9.8 75 192-267 1-90 (126)
81 KOG4626 O-linked N-acetylgluco 97.0 0.016 3.5E-07 55.3 12.9 120 133-259 298-419 (966)
82 COG3071 HemY Uncharacterized e 97.0 0.044 9.6E-07 49.5 15.0 125 125-258 267-391 (400)
83 COG2956 Predicted N-acetylgluc 97.0 0.17 3.7E-06 44.9 18.1 133 126-260 74-212 (389)
84 KOG1914 mRNA cleavage and poly 96.9 0.12 2.5E-06 48.8 17.8 133 124-260 369-504 (656)
85 KOG2003 TPR repeat-containing 96.9 0.036 7.8E-07 51.1 14.0 128 127-260 564-692 (840)
86 KOG1070 rRNA processing protei 96.9 0.083 1.8E-06 54.7 17.7 127 124-257 1533-1663(1710)
87 PF05843 Suf: Suppressor of fo 96.8 0.014 3E-07 51.3 10.8 96 158-255 2-97 (280)
88 PF14559 TPR_19: Tetratricopep 96.8 0.0085 1.9E-07 40.2 7.4 64 132-200 2-65 (68)
89 COG3063 PilF Tfp pilus assembl 96.8 0.086 1.9E-06 44.5 14.5 130 130-262 112-241 (250)
90 COG2956 Predicted N-acetylgluc 96.8 0.29 6.4E-06 43.4 18.3 132 126-261 146-282 (389)
91 PRK10747 putative protoheme IX 96.8 0.06 1.3E-06 49.7 15.2 89 132-225 129-219 (398)
92 PF12895 Apc3: Anaphase-promot 96.8 0.0031 6.8E-08 44.6 5.2 81 170-253 2-83 (84)
93 PF03704 BTAD: Bacterial trans 96.8 0.011 2.4E-07 46.3 8.7 70 159-230 64-138 (146)
94 KOG3941 Intermediate in Toll s 96.7 0.011 2.4E-07 51.3 8.7 88 156-244 66-174 (406)
95 PLN03088 SGT1, suppressor of 96.7 0.054 1.2E-06 49.3 13.6 103 128-236 9-111 (356)
96 PLN03088 SGT1, suppressor of 96.6 0.064 1.4E-06 48.8 13.9 93 165-260 10-102 (356)
97 KOG1840 Kinesin light chain [C 96.6 0.33 7.2E-06 46.2 18.8 131 127-257 247-396 (508)
98 COG5010 TadD Flp pilus assembl 96.5 0.26 5.6E-06 42.3 15.8 123 126-253 105-227 (257)
99 cd05804 StaR_like StaR_like; a 96.5 0.1 2.2E-06 46.8 14.5 124 134-262 93-220 (355)
100 KOG1155 Anaphase-promoting com 96.5 0.31 6.7E-06 45.3 16.9 160 88-254 278-458 (559)
101 KOG1070 rRNA processing protei 96.5 0.11 2.5E-06 53.8 15.3 143 124-271 1461-1610(1710)
102 PF14559 TPR_19: Tetratricopep 96.5 0.013 2.8E-07 39.3 6.3 64 168-235 2-65 (68)
103 cd05804 StaR_like StaR_like; a 96.5 0.1 2.2E-06 46.8 14.0 91 129-221 122-214 (355)
104 CHL00033 ycf3 photosystem I as 96.4 0.13 2.8E-06 41.3 13.0 103 156-259 34-144 (168)
105 PRK14720 transcript cleavage f 96.4 0.13 2.8E-06 52.0 15.3 144 124-275 34-196 (906)
106 KOG4626 O-linked N-acetylgluco 96.4 0.12 2.7E-06 49.5 14.1 122 126-254 325-448 (966)
107 PRK02603 photosystem I assembl 96.4 0.24 5.3E-06 39.8 14.5 80 126-208 40-121 (172)
108 PF13432 TPR_16: Tetratricopep 96.4 0.025 5.5E-07 37.5 7.4 59 201-260 5-63 (65)
109 CHL00033 ycf3 photosystem I as 96.4 0.12 2.7E-06 41.4 12.6 91 126-219 40-139 (168)
110 PRK10370 formate-dependent nit 96.4 0.16 3.5E-06 42.1 13.6 106 126-237 78-186 (198)
111 KOG2002 TPR-containing nuclear 96.4 0.032 7E-07 55.5 10.5 121 135-259 626-747 (1018)
112 COG4783 Putative Zn-dependent 96.3 0.47 1E-05 44.2 17.2 110 126-258 345-455 (484)
113 KOG1126 DNA-binding cell divis 96.3 0.14 3.1E-06 49.0 14.2 130 126-261 494-624 (638)
114 KOG2076 RNA polymerase III tra 96.3 0.12 2.7E-06 51.1 13.9 135 125-262 418-560 (895)
115 KOG2002 TPR-containing nuclear 96.3 0.064 1.4E-06 53.5 12.0 130 126-259 568-711 (1018)
116 PRK02603 photosystem I assembl 96.3 0.22 4.8E-06 40.1 13.6 85 156-243 34-121 (172)
117 PF03704 BTAD: Bacterial trans 96.2 0.065 1.4E-06 41.8 10.0 71 124-196 65-139 (146)
118 PF13424 TPR_12: Tetratricopep 96.0 0.032 6.8E-07 38.5 6.6 65 194-258 6-76 (78)
119 KOG3616 Selective LIM binding 96.0 0.12 2.7E-06 50.4 12.2 111 126-251 737-847 (1636)
120 KOG1915 Cell cycle control pro 96.0 0.45 9.7E-06 44.4 15.2 146 108-259 126-275 (677)
121 KOG1173 Anaphase-promoting com 96.0 0.12 2.6E-06 48.9 11.7 138 127-267 386-528 (611)
122 PF09976 TPR_21: Tetratricopep 95.9 0.6 1.3E-05 36.4 14.6 89 126-218 53-143 (145)
123 KOG3941 Intermediate in Toll s 95.9 0.069 1.5E-06 46.5 9.2 73 135-209 86-174 (406)
124 PRK15179 Vi polysaccharide bio 95.9 0.44 9.5E-06 47.3 16.0 127 126-259 57-185 (694)
125 KOG1129 TPR repeat-containing 95.8 0.31 6.6E-06 43.5 12.8 124 127-256 229-386 (478)
126 PF12569 NARP1: NMDA receptor- 95.7 0.53 1.2E-05 45.0 15.4 128 128-260 201-337 (517)
127 KOG0547 Translocase of outer m 95.7 0.3 6.4E-06 45.7 13.0 122 130-255 437-564 (606)
128 KOG1129 TPR repeat-containing 95.7 0.13 2.7E-06 45.8 10.2 104 152-260 218-322 (478)
129 KOG2053 Mitochondrial inherita 95.6 0.24 5.1E-06 49.3 12.8 88 169-260 55-142 (932)
130 COG5010 TadD Flp pilus assembl 95.6 0.68 1.5E-05 39.8 14.0 121 132-257 77-197 (257)
131 PF09295 ChAPs: ChAPs (Chs5p-A 95.5 0.51 1.1E-05 43.5 14.1 90 126-220 205-295 (395)
132 PRK15363 pathogenicity island 95.5 0.54 1.2E-05 37.5 12.4 90 126-220 40-130 (157)
133 KOG1915 Cell cycle control pro 95.5 0.81 1.8E-05 42.8 15.0 127 126-260 112-239 (677)
134 PF04840 Vps16_C: Vps16, C-ter 95.5 0.14 3E-06 45.9 10.0 108 123-252 179-286 (319)
135 PF12569 NARP1: NMDA receptor- 95.4 1.8 3.8E-05 41.5 17.6 128 126-257 148-291 (517)
136 PF13414 TPR_11: TPR repeat; P 95.4 0.12 2.5E-06 34.6 7.2 63 194-257 4-67 (69)
137 smart00299 CLH Clathrin heavy 95.4 0.65 1.4E-05 35.9 12.4 111 124-253 10-121 (140)
138 KOG2003 TPR repeat-containing 95.3 1.2 2.5E-05 41.5 15.2 122 126-254 597-719 (840)
139 COG5107 RNA14 Pre-mRNA 3'-end 95.1 0.44 9.4E-06 44.2 11.9 130 126-261 402-535 (660)
140 PRK10866 outer membrane biogen 95.1 0.47 1E-05 40.8 11.6 102 166-271 41-167 (243)
141 PF13432 TPR_16: Tetratricopep 95.0 0.15 3.2E-06 33.7 6.8 54 129-184 5-58 (65)
142 KOG3060 Uncharacterized conser 94.9 2.1 4.6E-05 36.9 14.7 118 133-255 64-181 (289)
143 PRK10803 tol-pal system protei 94.9 0.77 1.7E-05 40.0 12.7 97 123-222 145-246 (263)
144 PRK10153 DNA-binding transcrip 94.9 0.83 1.8E-05 43.8 13.9 120 136-260 357-485 (517)
145 PF13525 YfiO: Outer membrane 94.8 0.61 1.3E-05 38.8 11.4 32 241-272 103-134 (203)
146 PRK10866 outer membrane biogen 94.8 2.3 5.1E-05 36.4 15.3 29 238-266 185-213 (243)
147 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.63 1.4E-05 43.3 12.1 59 123-184 77-139 (453)
148 COG3071 HemY Uncharacterized e 94.7 1.9 4E-05 39.3 14.6 127 126-257 192-357 (400)
149 KOG0985 Vesicle coat protein c 94.6 1.7 3.6E-05 44.4 15.2 120 123-252 1050-1190(1666)
150 PF14938 SNAP: Soluble NSF att 94.6 1.1 2.4E-05 39.3 13.1 100 159-260 116-228 (282)
151 PF13424 TPR_12: Tetratricopep 94.6 0.13 2.7E-06 35.4 5.8 64 157-220 5-73 (78)
152 KOG0495 HAT repeat protein [RN 94.6 5 0.00011 39.2 17.7 121 134-260 563-683 (913)
153 PF12688 TPR_5: Tetratrico pep 94.4 1.6 3.6E-05 33.1 12.1 85 130-220 10-102 (120)
154 PF13170 DUF4003: Protein of u 94.2 2.2 4.8E-05 37.8 14.1 120 136-259 118-248 (297)
155 PF13512 TPR_18: Tetratricopep 94.2 0.7 1.5E-05 36.2 9.6 119 132-269 21-140 (142)
156 PF13414 TPR_11: TPR repeat; P 94.1 0.37 8.1E-06 32.1 7.2 63 156-220 2-65 (69)
157 KOG4570 Uncharacterized conser 94.1 0.21 4.5E-06 44.2 7.1 48 172-220 115-162 (418)
158 KOG1155 Anaphase-promoting com 93.9 3.8 8.2E-05 38.3 15.1 124 129-258 372-496 (559)
159 PF10300 DUF3808: Protein of u 93.9 2.9 6.3E-05 39.6 15.1 123 134-260 246-379 (468)
160 PF12688 TPR_5: Tetratrico pep 93.9 1.5 3.3E-05 33.3 10.8 88 165-255 9-102 (120)
161 KOG1914 mRNA cleavage and poly 93.4 5.9 0.00013 37.8 15.7 114 137-255 347-462 (656)
162 COG3629 DnrI DNA-binding trans 93.4 1.2 2.6E-05 39.0 10.6 77 159-237 155-236 (280)
163 COG3629 DnrI DNA-binding trans 93.3 2 4.3E-05 37.7 11.9 79 124-204 156-238 (280)
164 KOG1173 Anaphase-promoting com 93.3 0.75 1.6E-05 43.7 9.7 104 134-241 427-535 (611)
165 PF13371 TPR_9: Tetratricopept 93.3 0.67 1.4E-05 31.1 7.4 53 166-220 4-56 (73)
166 KOG3616 Selective LIM binding 93.2 0.88 1.9E-05 44.8 10.1 53 200-255 857-909 (1636)
167 COG1729 Uncharacterized protei 93.1 1.9 4.1E-05 37.3 11.3 102 158-262 143-249 (262)
168 PF13525 YfiO: Outer membrane 93.1 4.5 9.7E-05 33.5 16.3 139 130-269 14-182 (203)
169 KOG2796 Uncharacterized conser 92.9 5.9 0.00013 34.5 15.4 131 126-260 182-318 (366)
170 PF13371 TPR_9: Tetratricopept 92.9 0.66 1.4E-05 31.2 6.9 62 129-195 3-64 (73)
171 COG5107 RNA14 Pre-mRNA 3'-end 92.8 2 4.4E-05 40.0 11.4 94 156-253 396-491 (660)
172 PLN02789 farnesyltranstransfer 92.7 7.1 0.00015 35.0 15.7 146 90-241 38-189 (320)
173 KOG3785 Uncharacterized conser 92.4 1.3 2.9E-05 40.0 9.6 128 127-261 365-494 (557)
174 KOG1128 Uncharacterized conser 92.3 1 2.3E-05 44.0 9.4 126 126-256 429-581 (777)
175 KOG2076 RNA polymerase III tra 92.1 14 0.0003 37.3 16.9 120 135-259 153-272 (895)
176 KOG0985 Vesicle coat protein c 92.0 5.5 0.00012 40.9 14.0 137 122-267 1134-1298(1666)
177 PF07079 DUF1347: Protein of u 92.0 4.9 0.00011 37.6 12.9 124 132-258 17-158 (549)
178 PRK15363 pathogenicity island 91.9 5.5 0.00012 31.8 13.7 93 165-261 43-136 (157)
179 COG4700 Uncharacterized protei 91.8 6.7 0.00014 32.5 12.9 127 123-254 91-219 (251)
180 KOG1125 TPR repeat-containing 91.7 3 6.5E-05 39.8 11.5 118 137-260 410-530 (579)
181 KOG1156 N-terminal acetyltrans 91.6 13 0.00027 36.3 15.5 127 126-259 376-513 (700)
182 PLN03098 LPA1 LOW PSII ACCUMUL 91.5 1.6 3.5E-05 40.7 9.5 97 154-257 72-174 (453)
183 COG4105 ComL DNA uptake lipopr 91.5 8.6 0.00019 33.2 17.9 65 203-267 177-243 (254)
184 PF10300 DUF3808: Protein of u 91.2 7 0.00015 37.0 13.8 137 118-257 185-334 (468)
185 KOG0547 Translocase of outer m 91.1 4.8 0.0001 38.0 12.0 129 126-260 365-494 (606)
186 KOG1156 N-terminal acetyltrans 90.7 12 0.00025 36.5 14.5 110 154-267 366-479 (700)
187 KOG0495 HAT repeat protein [RN 90.7 17 0.00038 35.7 15.5 133 126-262 623-787 (913)
188 KOG2376 Signal recognition par 90.4 5.3 0.00011 38.4 11.8 122 123-256 14-138 (652)
189 PF13428 TPR_14: Tetratricopep 90.2 0.78 1.7E-05 27.9 4.4 31 230-260 3-33 (44)
190 KOG2053 Mitochondrial inherita 89.8 2.3 5.1E-05 42.5 9.4 87 169-260 21-109 (932)
191 PRK04841 transcriptional regul 89.8 12 0.00026 38.2 15.1 134 128-261 498-645 (903)
192 smart00299 CLH Clathrin heavy 89.3 5.2 0.00011 30.7 9.5 86 159-253 9-94 (140)
193 PF08631 SPO22: Meiosis protei 88.9 15 0.00032 32.0 14.4 125 133-259 5-152 (278)
194 PRK14720 transcript cleavage f 88.8 31 0.00067 35.5 16.6 89 126-220 88-176 (906)
195 KOG1174 Anaphase-promoting com 88.7 9.8 0.00021 35.3 11.8 54 205-260 346-400 (564)
196 PF04840 Vps16_C: Vps16, C-ter 88.6 6.9 0.00015 35.1 11.0 100 157-267 177-281 (319)
197 KOG0553 TPR repeat-containing 88.2 5 0.00011 35.3 9.4 100 129-236 89-190 (304)
198 PF10602 RPN7: 26S proteasome 88.2 11 0.00025 30.5 11.2 98 122-220 37-140 (177)
199 PRK04841 transcriptional regul 88.0 23 0.00049 36.2 15.7 133 130-263 621-766 (903)
200 PF13929 mRNA_stabil: mRNA sta 88.0 17 0.00037 32.0 12.5 119 135-253 142-263 (292)
201 PF11846 DUF3366: Domain of un 87.9 3.8 8.3E-05 33.6 8.4 59 205-263 120-179 (193)
202 PF13176 TPR_7: Tetratricopept 87.7 1.6 3.4E-05 25.3 4.3 26 230-255 1-26 (36)
203 PF13170 DUF4003: Protein of u 87.3 20 0.00044 31.7 16.4 118 137-257 78-211 (297)
204 PF07035 Mic1: Colon cancer-as 87.2 14 0.00031 29.8 11.7 97 144-253 17-114 (167)
205 COG1729 Uncharacterized protei 87.2 11 0.00023 32.8 10.7 95 124-221 145-243 (262)
206 PF13176 TPR_7: Tetratricopept 86.9 1.2 2.6E-05 25.8 3.5 23 160-182 2-24 (36)
207 KOG1128 Uncharacterized conser 86.7 4.6 0.0001 39.7 9.0 114 126-259 403-516 (777)
208 PF13174 TPR_6: Tetratricopept 86.6 0.94 2E-05 25.1 2.9 27 234-260 6-32 (33)
209 KOG1125 TPR repeat-containing 86.6 6.3 0.00014 37.7 9.6 127 126-260 358-496 (579)
210 PF13374 TPR_10: Tetratricopep 86.5 2.2 4.8E-05 24.8 4.7 32 229-260 3-34 (42)
211 PF13762 MNE1: Mitochondrial s 86.4 14 0.00031 29.0 11.4 100 146-246 27-133 (145)
212 KOG0553 TPR repeat-containing 86.3 16 0.00034 32.3 11.4 88 169-260 93-181 (304)
213 PLN02789 farnesyltranstransfer 86.2 25 0.00053 31.6 20.0 64 138-205 125-188 (320)
214 KOG4340 Uncharacterized conser 86.0 25 0.00054 31.4 12.4 85 167-253 251-335 (459)
215 KOG2047 mRNA splicing factor [ 85.9 27 0.00058 34.3 13.4 144 108-256 121-276 (835)
216 PF00637 Clathrin: Region in C 85.8 0.28 6.1E-06 38.0 0.4 86 126-220 12-97 (143)
217 PF00515 TPR_1: Tetratricopept 85.6 3.2 6.8E-05 23.2 4.8 32 229-260 2-33 (34)
218 PRK10153 DNA-binding transcrip 85.2 14 0.00031 35.4 11.7 63 155-220 418-480 (517)
219 PF00637 Clathrin: Region in C 85.2 0.22 4.7E-06 38.6 -0.5 83 163-253 13-95 (143)
220 COG4105 ComL DNA uptake lipopr 85.2 24 0.00052 30.5 18.0 146 84-266 47-205 (254)
221 PF10602 RPN7: 26S proteasome 85.2 7.2 0.00016 31.7 8.4 103 157-260 36-145 (177)
222 KOG2047 mRNA splicing factor [ 83.4 41 0.00088 33.1 13.5 139 98-242 147-295 (835)
223 KOG3785 Uncharacterized conser 82.8 25 0.00054 32.1 11.2 116 135-254 337-454 (557)
224 PF07719 TPR_2: Tetratricopept 82.8 4.9 0.00011 22.2 4.8 31 230-260 3-33 (34)
225 KOG3060 Uncharacterized conser 82.0 34 0.00073 29.8 15.2 120 134-259 99-222 (289)
226 PF04184 ST7: ST7 protein; In 81.7 14 0.00029 35.1 9.5 75 129-203 267-341 (539)
227 KOG0543 FKBP-type peptidyl-pro 81.6 21 0.00046 32.8 10.6 129 128-260 215-358 (397)
228 cd00923 Cyt_c_Oxidase_Va Cytoc 81.5 11 0.00024 27.6 7.0 44 140-184 26-69 (103)
229 PF02284 COX5A: Cytochrome c o 81.3 16 0.00035 27.0 7.9 32 189-220 41-72 (108)
230 TIGR02561 HrpB1_HrpK type III 80.8 26 0.00057 27.8 10.2 98 125-228 14-112 (153)
231 PF13428 TPR_14: Tetratricopep 80.6 7.2 0.00016 23.4 5.2 25 160-184 4-28 (44)
232 KOG4570 Uncharacterized conser 80.3 11 0.00023 33.8 7.9 48 136-184 115-162 (418)
233 COG4235 Cytochrome c biogenesi 80.3 41 0.00089 29.7 12.2 101 156-260 155-259 (287)
234 PRK15331 chaperone protein Sic 79.3 19 0.00042 29.0 8.5 90 128-221 44-133 (165)
235 PF02284 COX5A: Cytochrome c o 79.0 9.4 0.0002 28.2 6.1 60 139-201 28-87 (108)
236 PF11848 DUF3368: Domain of un 78.8 8.5 0.00018 24.0 5.2 34 203-236 12-45 (48)
237 PF11663 Toxin_YhaV: Toxin wit 78.4 2.4 5.2E-05 32.8 3.0 32 205-238 107-138 (140)
238 KOG3617 WD40 and TPR repeat-co 77.5 39 0.00084 34.4 11.5 49 130-185 737-785 (1416)
239 PF13374 TPR_10: Tetratricopep 77.3 6.8 0.00015 22.6 4.4 27 194-220 3-29 (42)
240 PF11846 DUF3366: Domain of un 76.4 13 0.00029 30.3 7.3 52 169-220 120-171 (193)
241 KOG1174 Anaphase-promoting com 76.2 68 0.0015 30.0 14.1 125 131-260 344-503 (564)
242 PF09205 DUF1955: Domain of un 75.9 36 0.00078 26.6 9.4 61 162-224 91-151 (161)
243 PF11207 DUF2989: Protein of u 75.8 34 0.00073 28.5 9.3 79 167-248 117-198 (203)
244 cd00923 Cyt_c_Oxidase_Va Cytoc 74.7 27 0.00058 25.6 7.4 63 172-237 22-85 (103)
245 PF11207 DUF2989: Protein of u 73.8 39 0.00084 28.2 9.2 75 137-213 122-198 (203)
246 PF04184 ST7: ST7 protein; In 73.8 74 0.0016 30.4 11.9 73 163-235 265-338 (539)
247 PF09613 HrpB1_HrpK: Bacterial 73.6 45 0.00098 26.7 12.8 112 125-248 14-129 (160)
248 KOG0548 Molecular co-chaperone 73.1 21 0.00047 33.9 8.3 104 129-238 10-114 (539)
249 PF09613 HrpB1_HrpK: Bacterial 73.0 44 0.00096 26.7 9.0 59 160-223 10-74 (160)
250 COG4649 Uncharacterized protei 72.8 52 0.0011 27.1 11.8 125 131-257 68-196 (221)
251 PF04053 Coatomer_WDAD: Coatom 72.5 87 0.0019 29.5 13.8 103 128-253 325-427 (443)
252 PF08870 DUF1832: Domain of un 72.3 15 0.00033 27.5 6.0 90 138-242 6-96 (113)
253 KOG1538 Uncharacterized conser 72.3 11 0.00024 36.9 6.3 111 154-270 553-680 (1081)
254 COG4235 Cytochrome c biogenesi 72.1 70 0.0015 28.2 12.5 109 123-237 158-269 (287)
255 KOG2659 LisH motif-containing 71.7 62 0.0014 27.5 11.0 115 153-271 22-148 (228)
256 COG4455 ImpE Protein of avirul 71.5 26 0.00057 29.8 7.6 76 125-202 5-81 (273)
257 PF13512 TPR_18: Tetratricopep 71.2 48 0.001 26.0 10.1 49 170-220 23-74 (142)
258 KOG1585 Protein required for f 71.2 69 0.0015 27.8 10.4 86 173-261 74-163 (308)
259 PF13929 mRNA_stabil: mRNA sta 71.1 57 0.0012 28.8 10.0 100 138-237 183-287 (292)
260 PF13181 TPR_8: Tetratricopept 70.9 15 0.00032 20.2 4.5 30 230-259 3-32 (34)
261 PF07079 DUF1347: Protein of u 70.6 98 0.0021 29.3 11.7 113 126-241 51-180 (549)
262 PF10366 Vps39_1: Vacuolar sor 70.0 19 0.00042 26.7 6.1 27 195-221 41-67 (108)
263 KOG2280 Vacuolar assembly/sort 69.5 32 0.0007 34.2 8.8 108 125-253 688-795 (829)
264 KOG4340 Uncharacterized conser 69.1 23 0.00049 31.6 7.1 82 169-256 124-206 (459)
265 PF06576 DUF1133: Protein of u 69.1 18 0.0004 29.1 6.0 88 78-178 46-137 (176)
266 KOG0548 Molecular co-chaperone 68.8 28 0.00061 33.2 8.1 73 126-203 41-114 (539)
267 PRK15331 chaperone protein Sic 68.6 36 0.00079 27.4 7.7 86 167-256 47-133 (165)
268 PF13281 DUF4071: Domain of un 67.7 1E+02 0.0022 28.4 13.7 133 134-270 195-347 (374)
269 COG3947 Response regulator con 67.5 90 0.0019 27.8 10.3 53 165-219 287-339 (361)
270 PF14689 SPOB_a: Sensor_kinase 67.3 19 0.00041 23.8 5.0 28 192-219 22-49 (62)
271 PRK10564 maltose regulon perip 66.4 12 0.00026 33.1 4.9 48 188-235 251-299 (303)
272 PF10366 Vps39_1: Vacuolar sor 66.2 20 0.00044 26.6 5.5 27 230-256 41-67 (108)
273 TIGR03184 DNA_S_dndE DNA sulfu 65.9 24 0.00051 26.2 5.7 91 138-242 5-98 (105)
274 PF14938 SNAP: Soluble NSF att 65.0 91 0.002 27.1 10.4 130 128-260 42-187 (282)
275 smart00028 TPR Tetratricopepti 65.0 14 0.0003 18.7 3.5 30 230-259 3-32 (34)
276 KOG0543 FKBP-type peptidyl-pro 64.6 1.2E+02 0.0026 28.1 13.7 68 193-261 257-324 (397)
277 KOG2376 Signal recognition par 64.5 1.5E+02 0.0032 29.0 12.5 123 126-253 381-516 (652)
278 KOG1538 Uncharacterized conser 64.5 33 0.00071 33.8 7.7 76 167-254 757-843 (1081)
279 KOG1127 TPR repeat-containing 63.8 62 0.0013 33.6 9.7 52 126-179 497-548 (1238)
280 PF13281 DUF4071: Domain of un 63.6 92 0.002 28.6 10.2 115 138-253 120-251 (374)
281 KOG4162 Predicted calmodulin-b 63.5 87 0.0019 31.4 10.5 106 153-260 319-426 (799)
282 KOG1127 TPR repeat-containing 63.3 76 0.0016 33.0 10.2 18 126-143 531-548 (1238)
283 KOG0624 dsRNA-activated protei 62.2 1.3E+02 0.0028 27.6 14.6 126 129-260 114-255 (504)
284 KOG3617 WD40 and TPR repeat-co 61.1 1E+02 0.0022 31.6 10.4 113 134-260 813-944 (1416)
285 KOG2114 Vacuolar assembly/sort 59.8 84 0.0018 31.9 9.7 117 122-252 335-455 (933)
286 KOG0403 Neoplastic transformat 59.7 38 0.00083 31.8 7.0 74 126-206 514-587 (645)
287 PF13762 MNE1: Mitochondrial s 59.5 85 0.0019 24.7 10.6 56 156-212 78-134 (145)
288 COG4455 ImpE Protein of avirul 59.3 66 0.0014 27.5 7.8 41 126-166 40-81 (273)
289 PF14689 SPOB_a: Sensor_kinase 58.4 18 0.00039 23.8 3.6 49 208-258 5-53 (62)
290 PF04053 Coatomer_WDAD: Coatom 58.0 27 0.00059 32.8 6.0 101 124-253 298-398 (443)
291 COG0457 NrfG FOG: TPR repeat [ 57.7 84 0.0018 24.1 15.6 127 130-260 139-268 (291)
292 PF09454 Vps23_core: Vps23 cor 57.3 22 0.00048 23.8 3.9 51 189-240 4-54 (65)
293 KOG0276 Vesicle coat complex C 55.5 1.8E+02 0.004 28.6 10.9 104 128-254 644-747 (794)
294 PF13431 TPR_17: Tetratricopep 55.4 13 0.00028 21.1 2.2 22 156-177 12-33 (34)
295 cd00280 TRFH Telomeric Repeat 55.2 1.1E+02 0.0023 25.4 8.1 19 202-220 120-138 (200)
296 TIGR03504 FimV_Cterm FimV C-te 54.9 24 0.00051 21.6 3.4 19 202-220 8-26 (44)
297 KOG4648 Uncharacterized conser 54.2 44 0.00096 30.4 6.3 107 126-247 102-214 (536)
298 PF10579 Rapsyn_N: Rapsyn N-te 53.6 41 0.00088 23.6 4.8 47 169-215 18-65 (80)
299 COG5108 RPO41 Mitochondrial DN 53.1 86 0.0019 31.2 8.4 79 123-205 30-115 (1117)
300 COG4700 Uncharacterized protei 52.9 1.4E+02 0.003 25.0 18.0 105 152-260 84-192 (251)
301 COG3898 Uncharacterized membra 52.8 2E+02 0.0043 26.9 12.3 114 134-253 97-213 (531)
302 PRK11906 transcriptional regul 52.2 2.1E+02 0.0046 27.0 12.9 117 137-259 274-403 (458)
303 COG2178 Predicted RNA-binding 51.8 1.4E+02 0.003 24.8 10.7 59 133-193 41-103 (204)
304 COG5187 RPN7 26S proteasome re 50.6 1.9E+02 0.004 25.9 10.8 134 127-262 83-226 (412)
305 TIGR02508 type_III_yscG type I 49.6 1.1E+02 0.0023 22.8 7.2 80 136-224 20-99 (115)
306 PF04090 RNA_pol_I_TF: RNA pol 49.4 1.1E+02 0.0024 25.5 7.6 66 194-260 42-108 (199)
307 PF13934 ELYS: Nuclear pore co 49.4 1.6E+02 0.0035 24.8 11.0 108 120-240 75-184 (226)
308 PF09205 DUF1955: Domain of un 49.1 1.3E+02 0.0028 23.6 13.6 64 192-256 85-148 (161)
309 COG3898 Uncharacterized membra 48.8 2.3E+02 0.005 26.5 15.7 101 157-259 188-294 (531)
310 TIGR02508 type_III_yscG type I 48.7 1.1E+02 0.0024 22.7 7.9 59 129-196 47-105 (115)
311 KOG4555 TPR repeat-containing 48.5 1.3E+02 0.0029 23.6 10.4 93 130-224 52-146 (175)
312 PF11848 DUF3368: Domain of un 48.5 64 0.0014 20.0 4.8 32 169-201 14-45 (48)
313 TIGR03504 FimV_Cterm FimV C-te 48.4 51 0.0011 20.1 4.2 23 234-256 5-27 (44)
314 KOG4162 Predicted calmodulin-b 47.6 3.1E+02 0.0068 27.7 14.3 127 126-258 655-784 (799)
315 KOG2610 Uncharacterized conser 47.5 2.3E+02 0.0049 26.0 10.8 116 133-253 115-234 (491)
316 KOG0550 Molecular chaperone (D 47.0 2.5E+02 0.0054 26.4 10.7 113 134-257 216-350 (486)
317 KOG2280 Vacuolar assembly/sort 46.8 62 0.0013 32.3 6.5 104 139-253 666-769 (829)
318 PF07035 Mic1: Colon cancer-as 46.6 1.5E+02 0.0033 23.8 9.3 55 178-237 15-69 (167)
319 COG2178 Predicted RNA-binding 45.8 1.8E+02 0.0038 24.3 10.1 21 240-260 133-153 (204)
320 PF11663 Toxin_YhaV: Toxin wit 45.1 21 0.00045 27.8 2.5 29 171-202 109-137 (140)
321 TIGR02561 HrpB1_HrpK type III 44.3 1.6E+02 0.0035 23.4 11.5 93 170-267 23-132 (153)
322 KOG4234 TPR repeat-containing 44.0 2E+02 0.0043 24.4 9.6 89 166-261 104-201 (271)
323 PF02607 B12-binding_2: B12 bi 42.8 54 0.0012 22.2 4.3 38 205-242 13-50 (79)
324 KOG0550 Molecular chaperone (D 42.6 2.8E+02 0.006 26.1 9.6 121 130-257 178-316 (486)
325 PF09797 NatB_MDM20: N-acetylt 42.4 1.7E+02 0.0038 26.4 8.6 71 126-199 185-258 (365)
326 COG3118 Thioredoxin domain-con 42.3 2.5E+02 0.0054 25.0 13.0 118 130-253 143-261 (304)
327 KOG0687 26S proteasome regulat 42.1 2.7E+02 0.0058 25.3 14.8 135 126-262 71-215 (393)
328 PRK08691 DNA polymerase III su 41.9 3.8E+02 0.0082 27.0 11.3 87 139-228 182-280 (709)
329 PF14853 Fis1_TPR_C: Fis1 C-te 41.8 90 0.002 19.9 4.8 26 236-261 9-34 (53)
330 KOG2610 Uncharacterized conser 41.6 1.2E+02 0.0026 27.7 7.0 87 169-257 115-204 (491)
331 PRK11639 zinc uptake transcrip 40.9 1.9E+02 0.004 23.2 7.7 63 147-212 17-79 (169)
332 PRK10564 maltose regulon perip 40.1 59 0.0013 28.9 4.9 48 153-201 252-300 (303)
333 PF10579 Rapsyn_N: Rapsyn N-te 40.1 98 0.0021 21.7 5.0 47 205-251 18-66 (80)
334 KOG1586 Protein required for f 39.9 2.1E+02 0.0047 24.7 7.9 18 166-183 23-40 (288)
335 PF11768 DUF3312: Protein of u 39.3 3.7E+02 0.008 26.1 11.5 62 123-186 410-473 (545)
336 COG5108 RPO41 Mitochondrial DN 39.2 1.7E+02 0.0037 29.2 8.1 76 162-240 33-115 (1117)
337 PRK07764 DNA polymerase III su 39.1 3E+02 0.0064 28.3 10.3 87 138-227 182-281 (824)
338 cd07153 Fur_like Ferric uptake 38.9 95 0.0021 22.7 5.4 49 162-211 5-53 (116)
339 PF12862 Apc5: Anaphase-promot 38.8 1.4E+02 0.003 21.1 7.2 54 204-257 9-70 (94)
340 COG3947 Response regulator con 38.7 2.9E+02 0.0062 24.8 8.7 69 126-196 284-356 (361)
341 COG0457 NrfG FOG: TPR repeat [ 38.5 1.8E+02 0.0038 22.2 16.2 132 126-260 100-234 (291)
342 PF07163 Pex26: Pex26 protein; 37.7 2.9E+02 0.0063 24.5 9.6 90 161-252 87-182 (309)
343 smart00386 HAT HAT (Half-A-TPR 37.7 64 0.0014 16.9 4.1 28 135-164 1-28 (33)
344 PF11838 ERAP1_C: ERAP1-like C 37.4 2.8E+02 0.006 24.1 19.1 119 127-253 135-262 (324)
345 smart00804 TAP_C C-terminal do 37.3 28 0.00062 23.1 2.0 20 172-191 40-59 (63)
346 cd08780 Death_TRADD Death Doma 37.1 78 0.0017 22.7 4.2 18 160-177 68-85 (90)
347 COG4003 Uncharacterized protei 36.9 59 0.0013 23.0 3.5 25 126-150 36-60 (98)
348 PRK14962 DNA polymerase III su 36.8 3.8E+02 0.0082 25.5 14.7 102 152-257 193-309 (472)
349 cd08315 Death_TRAILR_DR4_DR5 D 36.5 1.4E+02 0.0031 21.5 5.7 48 173-223 47-94 (96)
350 KOG4555 TPR repeat-containing 36.1 2.1E+02 0.0046 22.4 10.3 88 166-256 52-143 (175)
351 PF08311 Mad3_BUB1_I: Mad3/BUB 35.9 1.9E+02 0.0042 21.9 9.1 43 211-253 81-124 (126)
352 KOG4648 Uncharacterized conser 35.9 1.1E+02 0.0023 28.0 5.9 51 166-219 106-157 (536)
353 PRK15180 Vi polysaccharide bio 35.5 4.1E+02 0.0088 25.6 9.7 123 128-257 296-420 (831)
354 PF11817 Foie-gras_1: Foie gra 35.3 1.3E+02 0.0029 25.6 6.4 58 162-219 183-244 (247)
355 KOG2114 Vacuolar assembly/sort 35.1 5.2E+02 0.011 26.6 12.8 113 126-253 402-515 (933)
356 PRK14951 DNA polymerase III su 35.1 4.6E+02 0.01 26.0 11.2 86 141-229 189-286 (618)
357 KOG4077 Cytochrome c oxidase, 34.9 2.2E+02 0.0047 22.1 7.0 58 139-199 67-124 (149)
358 PF11123 DNA_Packaging_2: DNA 34.4 1.4E+02 0.0031 20.6 5.0 61 136-220 12-72 (82)
359 KOG2908 26S proteasome regulat 34.4 3.6E+02 0.0078 24.6 9.7 18 167-184 125-142 (380)
360 cd00280 TRFH Telomeric Repeat 34.3 2.7E+02 0.0058 23.1 8.4 70 90-170 87-156 (200)
361 PF09797 NatB_MDM20: N-acetylt 33.3 3E+02 0.0065 24.9 8.7 97 158-257 181-281 (365)
362 PRK14963 DNA polymerase III su 32.7 4.5E+02 0.0099 25.2 14.1 89 138-229 178-277 (504)
363 PRK08691 DNA polymerase III su 32.3 5.4E+02 0.012 25.9 12.1 91 174-267 181-285 (709)
364 PF02847 MA3: MA3 domain; Int 32.2 1E+02 0.0022 22.4 4.5 21 163-183 8-28 (113)
365 PRK06645 DNA polymerase III su 31.3 4.8E+02 0.01 25.1 11.6 89 138-229 190-293 (507)
366 cd08780 Death_TRADD Death Doma 31.3 1.2E+02 0.0025 21.8 4.3 50 164-216 39-88 (90)
367 KOG2796 Uncharacterized conser 31.2 3.7E+02 0.0081 23.8 11.9 98 157-255 177-279 (366)
368 PRK14958 DNA polymerase III su 31.2 4.8E+02 0.01 25.0 12.2 76 151-230 194-282 (509)
369 PF09454 Vps23_core: Vps23 cor 30.2 94 0.002 20.8 3.6 52 153-206 4-55 (65)
370 PF09868 DUF2095: Uncharacteri 30.1 2E+02 0.0044 21.7 5.6 25 126-150 66-90 (128)
371 PF00244 14-3-3: 14-3-3 protei 30.1 1.8E+02 0.0039 24.8 6.2 57 163-220 7-64 (236)
372 PLN03025 replication factor C 29.5 4E+02 0.0086 23.5 14.6 97 138-238 161-268 (319)
373 PF01475 FUR: Ferric uptake re 29.0 1.2E+02 0.0026 22.4 4.6 44 199-242 13-56 (120)
374 cd07153 Fur_like Ferric uptake 28.4 1.4E+02 0.003 21.8 4.8 49 126-175 5-53 (116)
375 PF07443 HARP: HepA-related pr 27.9 20 0.00043 23.2 -0.0 33 135-168 6-38 (55)
376 PF02607 B12-binding_2: B12 bi 27.7 83 0.0018 21.2 3.2 37 170-207 14-50 (79)
377 PF08673 RsbU_N: Phosphoserine 27.1 2E+02 0.0043 19.9 4.9 65 195-259 3-74 (77)
378 PF13934 ELYS: Nuclear pore co 27.0 3.6E+02 0.0078 22.7 7.5 74 126-207 113-186 (226)
379 PF04124 Dor1: Dor1-like famil 26.6 1.2E+02 0.0026 27.3 4.8 43 192-234 105-148 (338)
380 PF02259 FAT: FAT domain; Int 25.9 4.5E+02 0.0097 23.0 13.0 66 191-256 144-212 (352)
381 PF02184 HAT: HAT (Half-A-TPR) 25.9 99 0.0021 17.6 2.6 21 137-160 3-23 (32)
382 KOG1924 RhoA GTPase effector D 25.9 2.5E+02 0.0054 28.6 6.9 90 180-271 790-889 (1102)
383 PRK07003 DNA polymerase III su 25.8 7.4E+02 0.016 25.5 11.7 86 138-227 181-279 (830)
384 PF11817 Foie-gras_1: Foie gra 25.7 4.1E+02 0.009 22.5 9.4 58 198-255 183-245 (247)
385 KOG4077 Cytochrome c oxidase, 25.5 3.2E+02 0.007 21.2 7.2 47 174-221 66-112 (149)
386 PF14518 Haem_oxygenas_2: Iron 25.4 2.6E+02 0.0056 20.0 6.3 21 196-216 81-101 (106)
387 KOG0403 Neoplastic transformat 25.3 3.3E+02 0.0072 25.9 7.3 75 161-241 513-587 (645)
388 PRK11639 zinc uptake transcrip 25.1 3.6E+02 0.0077 21.5 7.3 51 125-176 29-79 (169)
389 COG2812 DnaX DNA polymerase II 25.1 6.3E+02 0.014 24.4 9.8 89 137-230 180-282 (515)
390 cd08318 Death_NMPP84 Death dom 25.0 1.2E+02 0.0026 21.3 3.6 39 138-179 47-85 (86)
391 KOG2041 WD40 repeat protein [G 24.8 7.5E+02 0.016 25.2 12.3 17 134-150 747-763 (1189)
392 KOG1585 Protein required for f 24.3 4.9E+02 0.011 22.8 8.8 24 231-254 193-216 (308)
393 PF10475 DUF2450: Protein of u 24.3 4.8E+02 0.01 22.8 9.6 171 87-275 97-279 (291)
394 PRK07764 DNA polymerase III su 24.2 6.5E+02 0.014 25.9 9.9 81 174-257 182-276 (824)
395 PF14840 DNA_pol3_delt_C: Proc 24.1 77 0.0017 24.1 2.6 27 170-197 10-36 (125)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 24.1 3.1E+02 0.0066 20.7 6.0 42 139-181 81-123 (126)
397 KOG1920 IkappaB kinase complex 24.0 9.2E+02 0.02 25.9 15.7 88 153-253 931-1024(1265)
398 COG2405 Predicted nucleic acid 24.0 1.7E+02 0.0037 23.0 4.4 31 205-235 121-151 (157)
399 PF09670 Cas_Cas02710: CRISPR- 23.8 5.7E+02 0.012 23.4 8.7 53 167-221 141-197 (379)
400 cd08318 Death_NMPP84 Death dom 23.8 1.3E+02 0.0028 21.2 3.6 42 172-216 45-86 (86)
401 cd08812 CARD_RIG-I_like Caspas 23.6 2.7E+02 0.0059 19.6 7.6 38 134-176 47-85 (88)
402 PRK14971 DNA polymerase III su 23.1 7.4E+02 0.016 24.5 11.4 75 151-228 196-282 (614)
403 PF08542 Rep_fac_C: Replicatio 23.0 2.6E+02 0.0056 19.2 6.1 42 198-241 10-51 (89)
404 KOG3677 RNA polymerase I-assoc 23.0 6.4E+02 0.014 23.8 8.8 130 122-260 202-339 (525)
405 COG5210 GTPase-activating prot 23.0 2.2E+02 0.0048 27.1 6.1 59 178-237 363-421 (496)
406 PRK15180 Vi polysaccharide bio 22.9 5.6E+02 0.012 24.8 8.3 83 133-220 335-418 (831)
407 smart00544 MA3 Domain in DAP-5 22.6 3E+02 0.0066 19.8 10.3 27 123-149 4-30 (113)
408 KOG2659 LisH motif-containing 22.6 4.3E+02 0.0093 22.5 7.0 64 189-254 22-90 (228)
409 PRK07003 DNA polymerase III su 22.5 8.6E+02 0.019 25.0 10.7 80 174-256 181-273 (830)
410 PF10255 Paf67: RNA polymerase 22.3 5.1E+02 0.011 24.2 8.0 64 157-220 122-191 (404)
411 PRK13342 recombination factor 22.3 6.2E+02 0.013 23.3 13.8 49 195-243 229-280 (413)
412 TIGR03581 EF_0839 conserved hy 22.2 3.6E+02 0.0078 22.9 6.3 79 173-254 137-234 (236)
413 PRK09462 fur ferric uptake reg 22.2 3.7E+02 0.0081 20.7 7.2 62 146-210 7-69 (148)
414 KOG1920 IkappaB kinase complex 22.1 1E+03 0.022 25.7 12.5 25 12-36 788-812 (1265)
415 COG0735 Fur Fe2+/Zn2+ uptake r 22.1 3.8E+02 0.0083 20.8 6.9 66 142-210 7-72 (145)
416 PRK14950 DNA polymerase III su 22.0 7.5E+02 0.016 24.2 11.8 89 139-230 183-283 (585)
417 PF12926 MOZART2: Mitotic-spin 22.0 3E+02 0.0066 19.6 8.0 42 178-220 29-70 (88)
418 KOG2297 Predicted translation 22.0 6E+02 0.013 23.0 8.2 73 130-213 264-341 (412)
419 PF10345 Cohesin_load: Cohesin 21.8 7.6E+02 0.016 24.1 13.1 135 127-262 106-259 (608)
420 PRK14970 DNA polymerase III su 21.5 6E+02 0.013 22.8 11.8 73 151-227 183-268 (367)
421 PRK14700 recombination factor 21.5 3.3E+02 0.0072 24.2 6.4 52 194-245 124-178 (300)
422 COG0292 RplT Ribosomal protein 20.8 2.2E+02 0.0047 21.4 4.3 41 156-202 72-112 (118)
423 PRK14952 DNA polymerase III su 20.8 8.1E+02 0.017 24.1 9.9 84 141-228 183-280 (584)
424 KOG0037 Ca2+-binding protein, 20.8 3.7E+02 0.0081 22.7 6.2 42 25-76 66-107 (221)
425 KOG2041 WD40 repeat protein [G 20.8 9.1E+02 0.02 24.6 10.6 55 155-219 850-904 (1189)
426 KOG1550 Extracellular protein 20.7 6.9E+02 0.015 24.2 9.0 15 169-183 261-275 (552)
427 PF01475 FUR: Ferric uptake re 20.7 1.5E+02 0.0032 21.9 3.7 43 164-207 14-56 (120)
428 PRK14951 DNA polymerase III su 20.7 8.3E+02 0.018 24.2 11.9 91 174-267 186-290 (618)
429 PF14669 Asp_Glu_race_2: Putat 20.5 2.9E+02 0.0062 23.2 5.3 25 125-149 136-160 (233)
430 PF12862 Apc5: Anaphase-promot 20.4 3.2E+02 0.0068 19.2 6.7 17 167-183 51-67 (94)
431 PF05664 DUF810: Protein of un 20.1 6.2E+02 0.013 25.4 8.6 67 187-253 211-288 (677)
432 cd01670 Death Death Domain: a 20.0 2.4E+02 0.0051 18.8 4.3 37 138-177 39-75 (79)
433 PF11491 DUF3213: Protein of u 20.0 15 0.00033 25.8 -1.7 21 153-173 20-40 (88)
434 PF14669 Asp_Glu_race_2: Putat 20.0 2.4E+02 0.0052 23.6 4.8 59 196-254 135-207 (233)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=240.56 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=163.4
Q ss_pred hhhcccccccccccccCCCcccccccchhhhhhhccCCCCCcccccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 023910 38 VAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFR 117 (275)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~ 117 (275)
+++.+.++++...+..++..+.++ ..++|.+|.+. +.. .+|+.++++|.+.+. .|+..+|+.++.
T Consensus 269 y~k~g~~~~A~~vf~~m~~~~~vt---~n~li~~y~~~---------g~~-~eA~~lf~~M~~~g~--~pd~~t~~~ll~ 333 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPEKTTVA---WNSMLAGYALH---------GYS-EEALCLYYEMRDSGV--SIDQFTFSIMIR 333 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCChhH---HHHHHHHHHhC---------CCH-HHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 344444544444444444333322 23466776433 234 499999999999988 888999999988
Q ss_pred hhcHH-----------------------hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHH
Q 023910 118 RLLKF-----------------------DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQ 174 (275)
Q Consensus 118 ~l~~~-----------------------~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~ 174 (275)
.+++. .+.+||++|+++|++++|.++|++|.+ ||++|||+||.+|+++|+.+
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHH
Confidence 76554 234899999999999999999999954 59999999999999999999
Q ss_pred HHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 175 ~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+|+++|++|... |+.||.+||+++|++|++.|++++|.++|++|. +.|+.||..||++||++|++.|++++|.+++++
T Consensus 409 ~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 409 KAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 999999999975 999999999999999999999999999999998 479999999999999999999999999999988
Q ss_pred H
Q 023910 254 A 254 (275)
Q Consensus 254 m 254 (275)
|
T Consensus 488 ~ 488 (697)
T PLN03081 488 A 488 (697)
T ss_pred C
Confidence 5
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=2.5e-27 Score=237.80 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=126.3
Q ss_pred hhhhhccCCCCCcccccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH------------------------
Q 023910 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF------------------------ 122 (275)
Q Consensus 67 ~~i~~~~~~~~~~~l~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~------------------------ 122 (275)
.+|.+|.+.+ .+. +|+++++.|...+. .|+..+|+.++..+++.
T Consensus 512 aLI~gy~k~G---------~~e-eAl~lf~~M~~~Gv--~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 512 ALIDGCARAG---------QVA-KAFGAYGIMRSKNV--KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HHHHHHHHCc---------CHH-HHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 4666665433 333 77777777777776 66677777776654432
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 123 -DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 123 -~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
.+.++|++|+++|++++|.++|++|.+. |+.|+..+||+||++|++.|++++|.++|++|... |+.||.+|||+||+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 2346777777777777777777777774 77777777777777777777777777777777754 77777777777777
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
+|++.|++++|.++|++|.+.|+.||..+|++||++|++.|++++|.++|++|.
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=2.6e-27 Score=237.61 Aligned_cols=179 Identities=13% Similarity=0.167 Sum_probs=159.2
Q ss_pred hhhhhhccCCCCCcccccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH-----------------------
Q 023910 66 MLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF----------------------- 122 (275)
Q Consensus 66 ~~~i~~~~~~~~~~~l~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~----------------------- 122 (275)
..+|.+|.+.+ .+. +|.+++++|.+.+. .|+..+|+.++.++++.
T Consensus 476 nsLI~~y~k~G---------~vd-~A~~vf~eM~~~Gv--~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 476 TTLISTCAKSG---------KVD-AMFEVFHEMVNAGV--EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHHHHHHHhCc---------CHH-HHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 45788876543 444 89999999999888 78889999998876654
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHc-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKE-QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~-~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
.+..+|++|++.|++++|.++|++|.+. .|+.||.+|||+||++|++.|++++|.++|++|.+. |+.||..+||+||.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHH
Confidence 3558999999999999999999999762 478999999999999999999999999999999865 89999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.+++++|.+.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999998763
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=226.86 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=142.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH-----------------------hHHHHHHHHHhcCCHHHHHH
Q 023910 86 NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF-----------------------DMIAVLRELLRQNHCLLALK 142 (275)
Q Consensus 86 ~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~-----------------------~~~~li~~~~~~g~~~~A~~ 142 (275)
... +|+.++++|.+.+. .|+..+|..++..+... .+.+||++|+++|++++|.+
T Consensus 204 ~~~-~A~~lf~~M~~~g~--~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 204 NYR-EAFALFREMWEDGS--DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred CHH-HHHHHHHHHHHhCC--CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 444 99999999999887 77788888777644322 23589999999999999999
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 023910 143 VFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 143 lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 222 (275)
+|++|.+ +|+++||+||.+|++.|++++|+++|++|... |+.||.+||+++|.+|++.|++++|.+++++|.+.
T Consensus 281 vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 281 VFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999965 49999999999999999999999999999865 99999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 223 GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 223 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
|+.||..+||+||++|+++|++++|.++|++|.
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999999999999999999999999998754
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=1.8e-26 Score=230.87 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=176.7
Q ss_pred hhcccchHHHHHHHHHHh---hhcccchh-------------------HHhhhhhcccccccccccccCCCcccccccch
Q 023910 8 QIKTQQDIYCIAWLLSLA---RCDRKGIM-------------------MSSSVAKSASWSDVKVKPWHNTQKQQVTATRS 65 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~a---~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (275)
+.+..|+..+.+.++... +....|.. +...+++.+.++.+...+..++..+.++ .
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs---~ 458 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS---W 458 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee---H
Confidence 457778888777777631 11111111 2233445555555544454454444333 2
Q ss_pred hhhhhhccCCCCCcccccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH-----------------------
Q 023910 66 MLVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF----------------------- 122 (275)
Q Consensus 66 ~~~i~~~~~~~~~~~l~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~----------------------- 122 (275)
+++|.++.+. +.. .+|+.+++.|.. +. .|+..+|..++..+.+.
T Consensus 459 ~~mi~~~~~~---------g~~-~eA~~lf~~m~~-~~--~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 459 TSIIAGLRLN---------NRC-FEALIFFRQMLL-TL--KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHHHHHHHC---------CCH-HHHHHHHHHHHh-CC--CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 3466666432 233 489999999985 34 78999999998866543
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+.++|++|+++|++++|.++|+.| .||+++||+||.+|+++|+.++|+++|++|.+. |+.||.+||++||.+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFISLLCA 598 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHH
Confidence 1348999999999999999999987 359999999999999999999999999999975 999999999999999
Q ss_pred HHhCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMK-TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~-~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
|++.|++++|.++|++|+ +.|+.||..||++|+++|+++|++++|.+++++|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999 7899999999999999999999999999999997
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=9.9e-26 Score=225.55 Aligned_cols=227 Identities=12% Similarity=0.083 Sum_probs=179.8
Q ss_pred hcccchHHHHHHHHHHhh---hcccchhHHh-------------------hhhhcccccccccccccCCCcccccccchh
Q 023910 9 IKTQQDIYCIAWLLSLAR---CDRKGIMMSS-------------------SVAKSASWSDVKVKPWHNTQKQQVTATRSM 66 (275)
Q Consensus 9 ~~~~~~~~~~~~~~~~a~---~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (275)
.|..|+.++.+.++.... ....|..++. .+++.+.++++...+..++..+.++ ..
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s---~n 257 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS---WN 257 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcch---hH
Confidence 377888888877776421 1122222222 2334444444444444444433332 23
Q ss_pred hhhhhccCCCCCcccccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH-----------------------h
Q 023910 67 LVIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF-----------------------D 123 (275)
Q Consensus 67 ~~i~~~~~~~~~~~l~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~-----------------------~ 123 (275)
++|.+|.+. +... +|+.++.+|.+.+. .|+..+|+.++..++.. .
T Consensus 258 ~li~~~~~~---------g~~~-eAl~lf~~M~~~g~--~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 258 AMISGYFEN---------GECL-EGLELFFTMRELSV--DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred HHHHHHHhC---------CCHH-HHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 466666433 3444 99999999999998 88999999998765432 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+.++|++|+++|++++|.++|++|.+ ||+++||+||++|++.|++++|+++|++|... |+.||..||+++|.+|
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHH
Confidence 55999999999999999999999954 59999999999999999999999999999875 9999999999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
++.|++++|.++++.|.+.|+.||..+||+||++|+++|++++|.++|++|.+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998653
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.66 E-value=2.1e-16 Score=102.18 Aligned_cols=49 Identities=24% Similarity=0.476 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 155 p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
||+++||+||++|++.|++++|.++|++|+++ |++||..|||+||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 45555555555555555555555555555433 45555555555555544
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.66 E-value=2.4e-16 Score=101.89 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 023910 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240 (275)
Q Consensus 191 pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~ 240 (275)
||+++||+||++|++.|++++|.++|++|++.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999986
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=7.3e-10 Score=99.26 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+.++|.++|+.-..+.|.+++++-+.. ..+.+..+||.+|.+-..... .++..+|... ..+||..|||+++++
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFNALLSC 282 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHHHHHHH
Confidence 4558999999999999999999999886 468899999999987665433 7899999987 599999999999999
Q ss_pred HHhCCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHH
Q 023910 203 LVGFKLRDL----VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV-AFSGIIRQDAFKY 257 (275)
Q Consensus 203 ~~~~g~~~~----A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~ 257 (275)
..+.|+++. |.+++.+|++-|+.|...+|..+|.-++|.++. ..|..++.+.+..
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999998765 568999999999999999999999999998876 4466677776543
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.23 E-value=1e-11 Score=73.21 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=16.2
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 188 G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=2.6e-11 Score=71.54 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 152 g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
|+.||++|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 899999999999999999999999999999994
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.04 E-value=3.4e-08 Score=90.10 Aligned_cols=130 Identities=8% Similarity=-0.012 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...+.+.|++++|.++|+++.+. ...+...+..+...|.+.|++++|.++|+++... +-.....+++.+..+|.+
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHH
Confidence 4555667788999999999988773 2334667788888899999999999999988743 122224678888899999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|...++.+.+. .|+...+..+...+.+.|++++|..+++++.+.+|.
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 99999999999988765 466677788888899999999999999888887775
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.90 E-value=1.9e-07 Score=85.26 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
+..+...+.+.|++++|.+.|+.+.+. +..++ ...|..+...+.+.|++++|...|+++.+. .+.+...+..+
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 220 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHH
Confidence 446778888999999999999999874 22222 234567778888999999999999998743 23346688888
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
...|.+.|++++|.++|+++.+.+-.....+++.+..+|++.|++++|.+.++++.+..|+.
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999865322234678889999999999999999999998887763
No 14
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.75 E-value=1.2e-08 Score=59.89 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd 227 (275)
|||+||++|++.|++++|.++|++|++.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666667777766666666666
No 15
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.68 E-value=2.8e-08 Score=58.16 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP 226 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p 226 (275)
+|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777666666
No 16
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.66 E-value=2.9e-08 Score=58.15 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~ 193 (275)
+|||+||++|++.|++++|.++|++|+.. |++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLER-GIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCC
Confidence 47999999999999999999999999975 999984
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.62 E-value=5.2e-06 Score=82.55 Aligned_cols=128 Identities=7% Similarity=-0.072 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...|.+.|++++|...|+.+.+. ...+...|..+...|.+.|++++|...|+++... .+.+..+++.+...+..
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 4455555555555555555555442 1224445555555555555555555555555421 23334555555555555
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
.|++++|.++++.+.+.+ .++...+..+...+.+.|++++|.+.++.+.+..
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 555555555555554432 2334444555555555555555555555544443
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.61 E-value=8.2e-06 Score=81.11 Aligned_cols=130 Identities=9% Similarity=-0.033 Sum_probs=85.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...|.+.|++++|..+++.+.+. ...+..+|..+...|.+.|++++|...|+.+... .+.+...+..+..+|.+
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 4556666667777777777776653 3445666777777777777777777777776532 23355666677777777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|..+|+.+.+. .+.+..++..+...+...|++++|.++++.+.+..+.
T Consensus 648 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 701 (899)
T TIGR02917 648 MKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701 (899)
T ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 77777777777766643 1234566777777777777777777777776665543
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3.2e-07 Score=82.66 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 235 (275)
+..||.+||.|+|+--..+.|.+++++-... ..+.+..+||.+|.+-+-. ....++.+|....++||..|||+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 6789999999999999999999999999865 5899999999999875433 2388999999999999999999999
Q ss_pred HHHHhcCCHHHHH----HHHHHHHHH
Q 023910 236 NGLEAMEEVAFSG----IIRQDAFKY 257 (275)
Q Consensus 236 ~~~~~~g~~~~A~----~l~~~m~~~ 257 (275)
++..+.|+++.|. +++.+|.+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 9999999988775 455555544
No 20
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=2.1e-07 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP 191 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p 191 (275)
+.|||++|++|++.|+++.|.++|++|++. |++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~-gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQ-GVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence 368999999999999999999999999975 8988
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.46 E-value=1.5e-07 Score=53.64 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVG 223 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g 223 (275)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44445555555555555555555444444
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.43 E-value=3.3e-05 Score=64.00 Aligned_cols=134 Identities=6% Similarity=-0.066 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+...+...|++++|.+.|++..+. ...+...++.+...|...|++++|.+.|++.........+...+..+-..|
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345667788899999999999999874 244667888889999999999999999999875322233456777788889
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+++++..+..+.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999987542 224567888899999999999999999998887554
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.43 E-value=2.6e-05 Score=64.58 Aligned_cols=131 Identities=13% Similarity=-0.022 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...+...|++++|.+.|++..+......+...+..+-..|...|++++|...|++.... .+.+...+..+...+..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHH
Confidence 5566777899999999999999773222334567777888999999999999999998743 33456788899999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.|++++|...+++..+. ...+...+..+...+...|+.++|..+.+.+.+.+|
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999998865 345667777888999999999999999998887654
No 24
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.35 E-value=4.2e-07 Score=51.76 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSL 189 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~ 189 (275)
+|||+||++|++.|++++|.++|++|.+. |+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~-g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRER-GI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHC-cC
Confidence 48999999999999999999999999864 64
No 25
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=2.3e-05 Score=69.21 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS---LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~---tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
-.|..|.+.++++.|.+.++.|++- ..|.. ...+.++.+.-.+.+++|..+|+++.. .+.++..+.|.+..+
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHH
Confidence 5678899999999999999999873 34533 333445555445679999999999964 378999999999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhCCccchHHHHHHHh
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV-AFSGIIRQDAFKYYGDLEFLEEDEEDIA 272 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~~~~e~~~~~~ 272 (275)
+...|++++|.+++.+-.+.. .-|..|...+|......|+. +.+.+++.++...+|+..++.+.+++.+
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~ 280 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEA 280 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999876432 22445666677777788887 7788999999999999877777766654
No 26
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.32 E-value=8.9e-06 Score=60.63 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC-CcCHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCCCCHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSL-EPEIQGFNALLKCLVGFK--------LRDLVVDCYELMKTVGCEPDRS 229 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~-~pd~~tyn~lI~~~~~~g--------~~~~A~~l~~~M~~~g~~pd~~ 229 (275)
|-...|.-+...+++.....+|+.+++ +|+ .|++.+||.++.+-++.. ++-..+.+|++|...+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 344566666677888888889988885 488 889999999988887643 2445778899999999999999
Q ss_pred HHHHHHHHHHhc
Q 023910 230 SYRTVINGLEAM 241 (275)
Q Consensus 230 ty~~li~~~~~~ 241 (275)
||+.++..+.+.
T Consensus 106 tYnivl~~Llkg 117 (120)
T PF08579_consen 106 TYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 27
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.17 E-value=3.7e-05 Score=70.87 Aligned_cols=118 Identities=10% Similarity=-0.041 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQ-WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~-g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
|+-.+++.+....+++++..++...+... ....-..|..++|+.|-+.|..++++.+++.=. .+|+-||..|||.||+
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHHHHH
Confidence 44566777777778888999988887731 122223455699999999999999999998865 4799999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~ 241 (275)
.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888889999999988887
No 28
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.14 E-value=2.8e-05 Score=64.71 Aligned_cols=88 Identities=17% Similarity=0.301 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC----------------ChhHHHH
Q 023910 156 QVSLYADMIQVFGTN-----GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK----------------LRDLVVD 214 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~-----g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g----------------~~~~A~~ 214 (275)
|..+|..+|+.|.+. |+++=....+..|. +.|+.-|..+||.||+.+=+.. .-+-|++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444455555544433 44444445555554 2455555555555555554321 2356899
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 215 l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
++++|.++|+.||..|+..|++.+++.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999998776654
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.11 E-value=3.3e-05 Score=67.63 Aligned_cols=131 Identities=12% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~ 204 (275)
..+..+.+.++++.+.++++.........++...|..+-..+.+.|+.++|++.|++..+. .| |....+.++..+.
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLI 191 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 5566677778888888888887654334567777878888888888888888888887643 44 4667777888888
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|+.+++.++++...... ..|...+..+-.+|...|+.++|..++++..+..|+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 8888888777777776443 334446677777888888888888888887766553
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.10 E-value=0.00061 Score=66.98 Aligned_cols=130 Identities=11% Similarity=-0.043 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+...|++++|...|++..+. -..+...|..+...|...|+.++|...++.+... .+.+...+..+ ..+.+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~ 189 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHH
Confidence 4555667778888888888887663 1234667777777788888888888877776533 12222233233 34677
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|..+++.+.+..-.++..++..+...+.+.|++++|.+.++++.+..|.
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7788888877777665433334445555566777777777777777777665443
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.09 E-value=0.00089 Score=65.28 Aligned_cols=131 Identities=12% Similarity=-0.102 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+-..+...|++++|...|++..+. -..+...|..+-..|...|++++|+..|++.... .+.+...|..+-..|.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 45566677889999999999988774 2335778888889999999999999999988643 3445677888888889
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++++|...|++..+. .+-+...|+.+-..+...|++++|.+.++...+..|+
T Consensus 445 ~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 999999999999988753 2234668888888999999999999999998877654
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.00 E-value=1.2e-05 Score=78.05 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=85.5
Q ss_pred HHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 142 ~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
.++-.|+. .|+.||-+||.+||.-||..|+.+.|- +|.-|+.+ ...-+...|+.++.+..++|+.+.+.
T Consensus 11 nfla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC--------
Confidence 34566767 499999999999999999999999999 99999865 68889999999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 222 VGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 222 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
.|-..||+.|+.+|.+.|++..-..+-++|.
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe 110 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLE 110 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 7888899999999999999877444433333
No 33
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00023 Score=62.58 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
++.+++..-|.+..+.|.++|.+.++...+..++....++|..++ .++.+.|..+|+...+. +.-+..-|..-|+-+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 456777777888899999999999886556778888888887665 45688899999998865 677888899999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDR---SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+.|+.+.|..+|+.-... +.++. ..|...|+-=.+.|+++....+.+.+.+.+++-
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998754 33332 489999999999999999999999999998873
No 34
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00064 Score=52.33 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
......+...+.+.|++++|.+.|+..... .+.+...|..+-..|.+.|++++|..+++...+.+ +.+..++..+-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 344566667777888888888888887642 34466777778888888888888888888766543 335566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCccchHHHHHHH
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDI 271 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~ 271 (275)
.+...|++++|...++...+..|.-....+..+++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 88888888888888888888887765544444433
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.92 E-value=0.00097 Score=65.03 Aligned_cols=129 Identities=9% Similarity=-0.180 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
.+-..+...|++++|...|++..+. .|+ ..+|..+-..|...|++++|+..|++.... -+-+...|..+-..|.
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445566789999999999998773 454 668888889999999999999999998643 2445788999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.+|.
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999887542 235667778888899999999999999999888776
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=97.91 E-value=0.00079 Score=64.86 Aligned_cols=127 Identities=6% Similarity=-0.126 Sum_probs=95.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHH-HHHHHHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ-GFNALLKCLV 204 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~-tyn~lI~~~~ 204 (275)
+-..+...|++++|...|++..+. .| +...|..+-..|...|++++|+..|++... ..|+.. .+..+...+.
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHH
Confidence 334566789999999999999884 44 466788888899999999999999999864 345432 3344455577
Q ss_pred hCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++++|...+++..+.. .| +...+..+-..+...|++++|.+.++++....|.
T Consensus 418 ~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred hccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 7899999999999887543 34 3334667777888999999999999887655443
No 37
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00069 Score=58.00 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=99.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHH----HHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADM----IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~L----i~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+.|..+++.|.+..+.|..-. +..|.|-| |+...-.+.+.+|.-+|++|. + .+.|+.-+-|.+..++
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s-~-k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELS-E-KTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-c-ccCCChHHHccHHHHH
Confidence 334456677888888888887731 44555544 444445577899999999996 3 3899999999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHHHHHHhh
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSY-RTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAA 273 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty-~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~~~ 273 (275)
...|++++|..++++..+..-+ |..|. |.++.+.-..-+.+--.+.+..+...+|+..|++...++.++
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeae 287 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAE 287 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999999998854333 22343 444444433334455678888899999999999888877654
No 38
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00019 Score=53.56 Aligned_cols=79 Identities=14% Similarity=0.318 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCC-CCCHHHHHHHHHHHHcCCC--------HHHHHHHHHHhHhcCCCCcCHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGL--------FQHVEILYFYLKTENSLEPEIQGF 196 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~-~p~~~tyn~Li~~~~~~g~--------~~~A~~lf~~M~~~~G~~pd~~ty 196 (275)
.-|..+...+++..-..+|+.+++ .|+ .|++.+||.++.+.++... +-+.+.+|+.|... +++||..||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 455556667999999999999999 599 9999999999999887632 34677899999876 799999999
Q ss_pred HHHHHHHHhC
Q 023910 197 NALLKCLVGF 206 (275)
Q Consensus 197 n~lI~~~~~~ 206 (275)
|.+|..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00034 Score=48.50 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~ 239 (275)
|..+...+...|++++|...|++.... .+.+...+..+-..|...|++++|.+.|+...+.. ..+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 444555566666666666666666432 22233556666666666666777776666655432 222245566666666
Q ss_pred hcCCHHHHHHHHHHHHHHhC
Q 023910 240 AMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 240 ~~g~~~~A~~l~~~m~~~~~ 259 (275)
..|+.++|.+.+....+..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 67777777776666655443
No 40
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.85 E-value=0.00011 Score=67.71 Aligned_cols=103 Identities=9% Similarity=0.060 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 023910 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231 (275)
Q Consensus 153 ~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 231 (275)
..-+.+..-.+++.+....+++++..++...+... ....-..|..++|..|.+.|..++++++++.=..+|+-||.+||
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 45578889999999999999999999998886431 22233345679999999999999999999998899999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 232 RTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 232 ~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
|.|++.+.+.|++..|.++..+|+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHH
Confidence 999999999999999999999876
No 41
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.81 E-value=0.0014 Score=64.45 Aligned_cols=130 Identities=7% Similarity=-0.094 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCHHH----HHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLL----ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 126 ~li~~~~~~g~~~~----A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
.+-..|.+.|++++ |...|+...+. ...+...+..+-..|.+.|++++|+..+++.... -+-+...+..+-.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~ 326 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455566677664 67777777663 1234567777777777777777777777776532 2233455666677
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSS-YRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+|.+.|++++|...|+.+.+. .|+... +..+..++...|+.++|.+.+++..+..|+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 777788888888887777643 344333 3334556777888888888888877776663
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.79 E-value=0.00014 Score=63.59 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
.+-..+.+.|+.++|.+.|++..+. .| |....+.++..+...|+.+++.++++..... ...|...+..+-.+|.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhc
Confidence 5556677899999999999999885 45 5888999999999999999999999998764 4566778899999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
..|+.++|..+|++.... -+-|..+...+.+++...|+.++|.++.++..+
T Consensus 226 ~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 999999999999997752 233777888999999999999999999887543
No 43
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.00022 Score=59.40 Aligned_cols=84 Identities=11% Similarity=0.168 Sum_probs=67.6
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC----------------HHHHHHHHHH
Q 023910 124 MIAVLRELLR-----QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL----------------FQHVEILYFY 182 (275)
Q Consensus 124 ~~~li~~~~~-----~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~----------------~~~A~~lf~~ 182 (275)
+..+|+.|.+ .|..+=-...+..|.+ .|+.-|..+||.||+.+=+..- -+-|++++++
T Consensus 50 F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 50 FLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQ 128 (228)
T ss_pred HHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence 3444444443 4677777778888988 7999999999999999887432 2668999999
Q ss_pred hHhcCCCCcCHHHHHHHHHHHHhCCCh
Q 023910 183 LKTENSLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 183 M~~~~G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
|+. +|+.||..|+..|++.+++.+..
T Consensus 129 ME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 129 MEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 986 59999999999999999988753
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.0014 Score=48.73 Aligned_cols=106 Identities=8% Similarity=-0.047 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCC-CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV--GCEPDRSSYRTVI 235 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G-~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~li 235 (275)
++-.+...+.+.|++++|.+.|+.+..... -......+..+...+.+.|++++|...|+..... +.......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666677777777766653210 0111234455666666677777777777766532 1111233455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCccch
Q 023910 236 NGLEAMEEVAFSGIIRQDAFKYYGDLEFL 264 (275)
Q Consensus 236 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 264 (275)
..+.+.|+.++|.+.++++.+.+|+-...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 66666777777777777777777665433
No 45
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.70 E-value=0.0014 Score=60.24 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
+++..+...++++.|.++|+++.++ .|++.. .|...|...++-.+|++++++...+ .+-|....+.-...|.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~~--~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPEVAV--LLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCcHHH--HHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 6777777789999999999999886 366544 4788888889999999999998754 45577777777777899
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRS-SYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
.++.+.|..+.+++.+ +.|+.. +|..|..+|.+.|+++.|.-.++.+-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999874 466555 99999999999999999998888743
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.70 E-value=0.0036 Score=62.73 Aligned_cols=142 Identities=11% Similarity=-0.071 Sum_probs=113.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCC----------CCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQW----------YKPQ---VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g----------~~p~---~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd 192 (275)
.+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+.++|+++|+++... .+-+
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n 392 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGN 392 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 455677889999999999999987421 1123 234566778899999999999999999753 5667
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHHHHHH
Q 023910 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDI 271 (275)
Q Consensus 193 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~ 271 (275)
...+..+...+...|++++|...+++..+. .|| ...+-.+...+.+.|++++|+.+++++++.+|+-..+..+.+..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 889999999999999999999999987753 465 45556666788899999999999999999999876666555543
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.65 E-value=0.0037 Score=49.24 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~ 241 (275)
.+-..+.+.|++++|...|+..... -+.+...|..+-.++.+.|++++|...|+...... ..|..++..+-.++.+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 3444455555555555555554421 12344555555555555555555555555555321 22444445555555555
Q ss_pred CCHHHHHHHHHHHHHHhCC
Q 023910 242 EEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 242 g~~~~A~~l~~~m~~~~~~ 260 (275)
|++++|.+.++...+.-|.
T Consensus 106 g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5555555555555554443
No 48
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0058 Score=52.46 Aligned_cols=120 Identities=11% Similarity=-0.035 Sum_probs=94.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh---
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG--- 205 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~--- 205 (275)
.-|++.|++++|++..+... +.-....=+..+-+..+.+-|...++.|..-. +..|.+.|-.++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhc
Confidence 45788999999999988732 22222222344556788999999999998543 77888877777765
Q ss_pred -CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 -FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 -~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.+.+|+.+|++|.+ ...|+..+-|-...++...|++++|+.++++....+++
T Consensus 185 ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred cchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 5589999999999964 37889999999999999999999999999998877665
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.61 E-value=0.0053 Score=61.52 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+-..+.+.|++++|.++|++..+. -..+...+..+...+...|++++|+..+++.... .+.+.. +..+-.++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHH
Confidence 456666777788888888888887663 1334566677777788888888888888887643 333444 77777777
Q ss_pred HhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
.+.|+.++|...+++..+. .| +...+..+...+.+.|..+.|.+.++....
T Consensus 127 ~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 8888888888888887753 33 334445566777777888888877766554
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.58 E-value=0.007 Score=61.97 Aligned_cols=122 Identities=11% Similarity=-0.055 Sum_probs=95.9
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
+.|++++|...|++..+ ..|+...|..+-..+.+.|+.++|+..|++.... -+-+...++.+-.++...|+.++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 588 IPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45888899888888876 3567888888888888999999999998888642 233456667777788888999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 213 VDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 213 ~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
...|+...+. .| +...+..+-.++...|++++|...+++..+.-|..
T Consensus 663 i~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 663 REMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9988887643 33 45567788888889999999999999988887765
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.55 E-value=0.0042 Score=65.00 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=100.0
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHH---------
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL--------- 199 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~l--------- 199 (275)
..+...|++++|...|++..+. -.-|...+..|-..|.+.|++++|+..|++..+...-.++...|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 3456789999999999999884 23378889999999999999999999999986431111222223222
Q ss_pred ---HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 200 ---LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 200 ---I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-..+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.+++..+..|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 335678999999999999998642 235567778889999999999999999999988776
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.53 E-value=0.033 Score=51.46 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|+.++|.+++++..++ .||... .++.+....++.+++.+..+...+. .+=|...+.++=..|.
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 36778888899999999999998774 344421 2344555669999999999999754 4455567888889999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
+.|++++|.+.|+...+ ..|+..+|..+-..+.+.|+.++|.+++++-..
T Consensus 340 ~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 340 KHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999885 469999999999999999999999999988654
No 53
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.53 E-value=0.0073 Score=61.85 Aligned_cols=127 Identities=11% Similarity=-0.060 Sum_probs=87.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
+...+.+.|+.++|...|++..+. . .++...+..+...+.+.|++++|+..|++... +.|+...|..+-..+.+.
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHC
Confidence 344556677777777777777663 1 22333333333444455888888888877752 457777888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 207 KLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|+.++|...|++..+. .| +...++.+-..+...|++++|.++++...+..|.
T Consensus 623 G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 623 HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8888888888877643 34 4445666667788888888888888888777664
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.52 E-value=0.0091 Score=49.68 Aligned_cols=122 Identities=8% Similarity=-0.004 Sum_probs=84.2
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH-HhCCC--hh
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL-VGFKL--RD 210 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~-~~~g~--~~ 210 (275)
.++.+++...++...+. -..|...|..|-..|...|++++|...|+....- -.-|...+..+-.++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 34455666666665553 2457778888888888888888888888877632 223556666666653 56666 48
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+|..++++..+..-. |..++..+-..+.+.|++++|...++++.+..|.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888888887754322 5567777777788888888888888888877765
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.51 E-value=0.037 Score=55.73 Aligned_cols=141 Identities=9% Similarity=-0.071 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCC------------CCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQW------------YKPQVSL-YADMIQVFGTNGLFQHVEILYFYLKTENSLEP 191 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g------------~~p~~~t-yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p 191 (275)
..|.-+|...+++++|..+++.+.+... ..||-.. +..++..+...|++.+|+++++++... -+-
T Consensus 371 ~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~ 448 (822)
T PRK14574 371 DDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APA 448 (822)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 5678888888999999999988877311 1223222 334556678888899999999988754 566
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHHHH
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEE 269 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~ 269 (275)
|......+-+.+...|.+.+|.+.++.... +.| |..+.......+...|++.+|..+.+++.+.+|+-.-..++++
T Consensus 449 n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 449 NQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 788888888888888999999998865543 244 4556667777888889999999999999999998766666554
No 56
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.50 E-value=0.00045 Score=61.02 Aligned_cols=116 Identities=10% Similarity=-0.000 Sum_probs=87.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh----
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG---- 205 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~---- 205 (275)
.+...|++++|+++++.- .+.-.....+..|.+.++++.|.+.++.|++ .-.|... ..|..++..
T Consensus 111 i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l-~qLa~awv~l~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSIL-TQLAEAWVNLATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHH-HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHH-HHHHHHHHHHHhC
Confidence 345579999999988653 2566777889999999999999999999974 3445443 334444433
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
...+.+|+.+|+++.+. ..++..+.|.+.-++...|++++|++++.+..+.
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34799999999998754 6788899999999999999999999999986543
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.50 E-value=0.0082 Score=55.58 Aligned_cols=130 Identities=14% Similarity=-0.004 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL---YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t---yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
..+...+...|+.+.|.+++++..++ .||... .....-.....++.+.+.+.++...+...-.|+.....++=.
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~ 343 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 36777888999999999999999885 344331 122222333457888899999887654222222245567888
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
.|.+.|++++|.+.|+.-......||...+..+...+.+.|+.++|.+++++....
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999996555556899999999999999999999999999986543
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.50 E-value=0.0078 Score=59.35 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-QGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~lI~~~ 203 (275)
-|-....+.|..++|..+++.... +.|| ......+...+.+.+++++|+...+.... ..||. ...+.+=.++
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHH
Confidence 455556678999999999999977 3565 66777888999999999999999999874 34555 5556666678
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|+.++|..+|++.... ..-+..++..+-.++-..|+.++|...|+...+..+.
T Consensus 165 ~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 8899999999999999872 2234678889999999999999999999999887765
No 59
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0025 Score=43.90 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...+...|++++|.++|++..+. ...+..++..+...|...|++++|.+.|+..... ...+..++..+...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 4455667789999999999999774 2345577888899999999999999999988643 34455788899999999
Q ss_pred CCChhHHHHHHHHHHh
Q 023910 206 FKLRDLVVDCYELMKT 221 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~ 221 (275)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999987654
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.47 E-value=0.015 Score=51.45 Aligned_cols=120 Identities=11% Similarity=-0.070 Sum_probs=85.0
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFK 207 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g 207 (275)
..|.+.|+.++|...|++..+. -..+...|+.+-..|...|++++|...|+...+ +.| +..+|..+-.++...|
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 3566778888888888888773 233578888888888888888888888888763 344 4567777888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
++++|.+.|+.-.+. .|+..........+...++.++|.+.+++..
T Consensus 147 ~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 147 RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888888887643 3443322222333445677888888886644
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.47 E-value=0.012 Score=49.76 Aligned_cols=133 Identities=6% Similarity=-0.059 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH-HHHHHHHHHHHcC--------CCHHHHHHHHHHhHhcCCCCcCH-H
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV-SLYADMIQVFGTN--------GLFQHVEILYFYLKTENSLEPEI-Q 194 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~tyn~Li~~~~~~--------g~~~~A~~lf~~M~~~~G~~pd~-~ 194 (275)
..+-..+.+.|++++|...|+.+.+...-.|.. .++..+-..+.+. |+.++|.+.|+..... .|+. .
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~ 150 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEY 150 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChh
Confidence 344567778899999999999998753222222 2344444555544 7889999999998753 3332 2
Q ss_pred HHH-----------------HHHHHHHhCCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 195 GFN-----------------ALLKCLVGFKLRDLVVDCYELMKTVG--CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 195 tyn-----------------~lI~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
.+. .+-..|.+.|++++|...+++..+.. -......+..+..++.+.|++++|..+++.+.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 221 33456778899999999999987431 22345688899999999999999999999999
Q ss_pred HHhCC
Q 023910 256 KYYGD 260 (275)
Q Consensus 256 ~~~~~ 260 (275)
..||+
T Consensus 231 ~~~~~ 235 (235)
T TIGR03302 231 ANYPD 235 (235)
T ss_pred hhCCC
Confidence 88875
No 62
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0084 Score=47.06 Aligned_cols=124 Identities=11% Similarity=0.010 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH--HHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL---YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI--QGFNAL 199 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t---yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~--~tyn~l 199 (275)
..++..+ ..++...+...++.+.+.+ ..+... .=.+-..+...|++++|...|+..... .-.|+. ...-.|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 3444444 4788999999999998852 333222 222347788899999999999999864 323332 344456
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
-..+...|++++|+..++......+. ...+...-+.|.+.|+.++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFK--ALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchH--HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67788899999999999875544443 346678888999999999999998764
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.45 E-value=0.011 Score=49.97 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-QGFNALLK 201 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~lI~ 201 (275)
...+...+.+.|+++.|...|++..+...-.|. ..++..+-..|.+.|++++|...|+++.+...-.|.. .++..+-.
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence 345566777899999999999999774211121 2467888899999999999999999997532112221 24444445
Q ss_pred HHHhC--------CChhHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 202 CLVGF--------KLRDLVVDCYELMKTVGCEPDRS-SY-----------------RTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 202 ~~~~~--------g~~~~A~~l~~~M~~~g~~pd~~-ty-----------------~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
++.+. |+.++|.+.|+...+. .|+.. .+ -.+-..+.+.|++++|...+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55544 7889999999998743 23221 11 134566788999999999999999
Q ss_pred HHhCCc
Q 023910 256 KYYGDL 261 (275)
Q Consensus 256 ~~~~~~ 261 (275)
+.||+-
T Consensus 194 ~~~p~~ 199 (235)
T TIGR03302 194 ENYPDT 199 (235)
T ss_pred HHCCCC
Confidence 998864
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.44 E-value=0.0079 Score=63.02 Aligned_cols=127 Identities=7% Similarity=-0.029 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|+.++|++.|+...+. -..+...+..+...|...|+.++|++.|+..... -+-+..++..+-.++.+
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh
Confidence 3445556667777777777777663 1335666777777777777777777777765421 12234445556666677
Q ss_pred CCChhHHHHHHHHHHhCC--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVG--CEP---DRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g--~~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
.|++++|.++|+...... -.| +...+..+-..+...|+.++|.+.++..+.
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777766432 122 224455556666777777777777777654
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.44 E-value=0.011 Score=59.36 Aligned_cols=118 Identities=12% Similarity=0.025 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
.|...|+++.|+++|+++.+.. .-|...+..|+..|...++.++|++.++.... ..|+...|-.++..+...++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchH
Confidence 3444455555555555554431 11233344445555555555555555555532 234444443332223223334
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 210 DLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 210 ~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
.+|++.++++.+.. +-+...+.-+..++.+.|-...|.++..+
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 34555555555331 11333444555555555555555544433
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.41 E-value=0.013 Score=49.30 Aligned_cols=131 Identities=10% Similarity=-0.050 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
+.|--+|...|+...|.+-+++..+. -+-+.-+|.++-..|-+.|..+.|.+-|+.-.+. -+-|....|.-=.-+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 45666888999999999999998884 2335678888889999999999999999887532 1223455566666678
Q ss_pred hCCChhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 205 GFKLRDLVVDCYELMK---TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~---~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
..|++++|...|+.-. ..|..++ ||.-+.-+-.+.|+.+.|.+.++...+..|+.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~--t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSD--TLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcch--hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 8999999999999887 3455555 66666666778999999999999988887774
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.34 E-value=0.00074 Score=66.14 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=85.8
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 140 A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
..++.+..++-.+ .||..+|.++++.-.-+|+++.|..++.+|+++ |+..+.+-|-.||-+ .++...+..+...|
T Consensus 188 vekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgm 262 (1088)
T KOG4318|consen 188 VEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGM 262 (1088)
T ss_pred HHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHH
Confidence 3444444444223 589999999999999999999999999999865 999999988888877 88888889999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 023910 220 KTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250 (275)
Q Consensus 220 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 250 (275)
.+.|+.||..||.--+..+...|....+.+.
T Consensus 263 qe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 263 QEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred HHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 9999999999999888888887765554443
No 68
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.34 E-value=0.0041 Score=47.92 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHh--------------HhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYL--------------KTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK- 220 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M--------------~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~- 220 (275)
|..++.++|-++++.|+++....+.+.. .......|+..+..+++.+|+.+|++..|+.+.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456777777777777777777766542 1112366899999999999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCC
Q 023910 221 TVGCEPDRSSYRTVINGLEAMEE 243 (275)
Q Consensus 221 ~~g~~pd~~ty~~li~~~~~~g~ 243 (275)
.++++.+..+|..|++-....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 67888889999999987765544
No 69
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0042 Score=59.12 Aligned_cols=160 Identities=10% Similarity=0.015 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH-------------------hHHHHHHHHHhcCCHHHHHHHHHHhHHc
Q 023910 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF-------------------DMIAVLRELLRQNHCLLALKVFEDIRKE 150 (275)
Q Consensus 90 ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~li~~~~~~g~~~~A~~lf~~m~~~ 150 (275)
++..+|+.+++..-....+..+|.+.+=++-+. .+.++=++|.-.++.+.|++.|+....
T Consensus 371 ~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ- 449 (638)
T KOG1126|consen 371 QAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ- 449 (638)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-
Confidence 667777777766544445566676665333221 234778888889999999999998866
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH---HHHHhCCChhHHHHHHHHHHhCCCCC
Q 023910 151 QWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL---KCLVGFKLRDLVVDCYELMKTVGCEP 226 (275)
Q Consensus 151 ~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI---~~~~~~g~~~~A~~l~~~M~~~g~~p 226 (275)
+.| ...+||-+=+-+.....+|.|+.-|..- +..|...||++- ..|.|.++++.|.-.|+.-. .+.|
T Consensus 450 --ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~--~INP 520 (638)
T KOG1126|consen 450 --LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV--EINP 520 (638)
T ss_pred --cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh--cCCc
Confidence 456 6788888878888888889998888543 556777777754 44778899999988888755 3455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 227 -DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 227 -d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
|.+.-.++-..+-+.|+.|+|.+++++....-|
T Consensus 521 ~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 521 SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 445556666677788999999999998765543
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.28 E-value=0.014 Score=44.63 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|+.++|.+.|+..... ...+...|..+-..|.+.|++++|...|+..... .+.+...|..+-..|.
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 35556777889999999999999774 2447788889999999999999999999988643 4556788888888999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 234 (275)
..|+.++|...|+...+. .|+...+.-+
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 999999999999987753 3555554433
No 71
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.068 Score=49.57 Aligned_cols=123 Identities=10% Similarity=-0.020 Sum_probs=101.1
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-HHHHHHHHHHHHhCCChhH
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-IQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-~~tyn~lI~~~~~~g~~~~ 211 (275)
..|+.++|+..++.+.+. .+-|+.-+....+-+.+.|+.++|.+.|+.+.. ..|+ ....-.+=.+|.+.|++.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence 679999999999999885 344666666677899999999999999999974 4666 5666777889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|..+++.-... .+-|...|..|-.+|...|+..+|..-..+...+-|..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 99999987633 45567799999999999999998888888877665554
No 72
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.025 Score=41.81 Aligned_cols=99 Identities=7% Similarity=-0.005 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-CCCcCHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPEIQGFNALLK 201 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G~~pd~~tyn~lI~ 201 (275)
+..+...+.+.|++++|.+.|+++.+..+-.| ....+..+...|.+.|++++|...|+...... +.......+..+-.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 45666778889999999999999987521111 13566778899999999999999999987532 11122456788888
Q ss_pred HHHhCCChhHHHHHHHHHHhC
Q 023910 202 CLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~ 222 (275)
++.+.|+.++|...+++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 899999999999999999865
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=97.22 E-value=0.016 Score=55.91 Aligned_cols=116 Identities=6% Similarity=-0.172 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
+++++|...+++..+. .| +...|..+-..+...|++++|+..|++.... -+-+...|..+-..|...|++++|.
T Consensus 318 ~~~~~A~~~~~~Al~l---dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 318 NAMIKAKEHAIKATEL---DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred hHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4588999999999773 34 6778888888889999999999999998743 2334567888888999999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 214 DCYELMKTVGCEPDR-SSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
..++...+. .|+. ..+..+...+...|++++|.+.+++..+.
T Consensus 393 ~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 393 QTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 999998754 3432 22333444577789999999999887654
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.21 E-value=0.018 Score=45.22 Aligned_cols=101 Identities=8% Similarity=-0.096 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+...|++++|...|+..... -..+...|..+-..+.+.|++++|+..|+....- -+.+...+..+-.++.+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 4455667899999999999999874 2447888999999999999999999999999742 45578999999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYR 232 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~ 232 (275)
.|+.++|...|+.-.+ +.|+...|.
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 9999999999998764 446554444
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.18 E-value=0.028 Score=49.72 Aligned_cols=122 Identities=10% Similarity=-0.045 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
++.+.++.-+.++..+....|+ ...|..+-..|.+.|+.++|...|++..+. -+-+...|+.+-..|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4566777777777653233333 356777778899999999999999998743 344678999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 213 VDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 213 ~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
...|+...+ +.| +..+|..+-..+...|++++|.+.++...+..|+
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999875 345 4567788888899999999999999999888775
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.0011 Score=46.91 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=9.7
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 023910 163 MIQVFGTNGLFQHVEILYFY 182 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~ 182 (275)
+-.+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.08 E-value=0.018 Score=53.35 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=85.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHH-HHHHHH---
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN-ALLKCL--- 203 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn-~lI~~~--- 203 (275)
...+...|+++.|...++.+.+. -+-+...+..+...|.+.|++++|.+++..+.+. +.. +...+. .-+.++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHH
Confidence 44555678888888888888774 1235567778888888888888888888888754 333 333332 111211
Q ss_pred HhCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 204 VGFKLRDLVVDCYELMKTVG---CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+..|+-
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 22233333334444444321 11377788888899999999999999999999887764
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.06 E-value=0.053 Score=51.44 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCC--CCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---C--CCCcC-H
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQW--YKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---N--SLEPE-I 193 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g--~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~--G~~pd-~ 193 (275)
.+...++..+++++|..++....+..- +.++ ..+|+.|=..|-+.|++++|+++|++.... . +..+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 566677778888888888876655321 2222 468899999999999999999999976432 1 11232 4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHH----hCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMK----TVGC--EPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
..+|-|=.+|.+.+..++|..+|.+-. ..|. +-...+|..|...|-+.|++++|.++.+....
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 677888888999999999999887654 2232 22346889999999999999999999988764
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.05 E-value=0.021 Score=49.65 Aligned_cols=113 Identities=9% Similarity=-0.001 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH----HHHHHHHHHHHhCCChhHHHHHHHHHHhC-CC-CCCHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI----QGFNALLKCLVGFKLRDLVVDCYELMKTV-GC-EPDRSS 230 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~-~pd~~t 230 (275)
...|+.-+..+.+.|++++|...|+.+.+. -|+. ..+--+-.+|...|++++|...|+.+.+. .- ......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 566888777777789999999999999754 2443 35566778889999999999999999832 11 112223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHHHHHHh
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIA 272 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~~ 272 (275)
+--+...+...|+.++|..++++.++.||+-....+..++..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 444556677899999999999999999999877777766543
No 80
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.02 E-value=0.0091 Score=45.98 Aligned_cols=75 Identities=7% Similarity=-0.037 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMK---------------TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~---------------~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
|..++.++|-++++.|+++....+++..= .....|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56789999999999999999999987541 234569999999999999999999999999999999
Q ss_pred HhCCccchHHH
Q 023910 257 YYGDLEFLEED 267 (275)
Q Consensus 257 ~~~~~~~~~e~ 267 (275)
.|+ +..-+++
T Consensus 81 ~Y~-I~i~~~~ 90 (126)
T PF12921_consen 81 KYP-IPIPKEF 90 (126)
T ss_pred HcC-CCCCHHH
Confidence 999 7554443
No 81
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.00 E-value=0.016 Score=55.30 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhH
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~ 211 (275)
..|.+|.|+..+++-.+. .|+ ...||.|-+++-..|++.+|++.+++-..- +.--...-|.|-+.|...|++++
T Consensus 298 eqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchH
Confidence 347888888888887663 455 678999999999999999999999887632 33345678888888999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 212 VVDCYELMKTVGCEPD-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
|.++|..-.+ +.|+ ...+|.|-..|-..|++++|...+++.++.-|
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 9998887653 3343 24567788888889999999999888776533
No 82
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.98 E-value=0.044 Score=49.50 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
.+++.-+.++|+.++|.++..+-.++ +..|+..+ .-.+.+-++.+.-++..+.-.+..+-.| -.+.+|=..|.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~ 339 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLAL 339 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHH
Confidence 37788888999999999999998885 56666222 2345556777777777776665545566 67888889999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
+.+.+.+|...|+. .-...|+..+|+-+-+++.+.|+..+|.++.++....+
T Consensus 340 k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 340 KNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999994 55678999999999999999999999999999976444
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.17 Score=44.88 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+|=+-|-+.|..|.|+++...+.++.++.-+ ...--.|-.-|...|.+|.|+.+|..+..+ -..-...--.|+..|
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--~efa~~AlqqLl~IY 151 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--GEFAEGALQQLLNIY 151 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--hhhhHHHHHHHHHHH
Confidence 5556677788899999988888775332222 233444566688888889999998888754 123345567788888
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRS----SYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-+..+|++|+++-+++...|-.+..+ -|.-|-..+.-..+++.|.+++.+....-|+
T Consensus 152 Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 152 QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 88888888888888777555444332 3444555555667788888888887766555
No 84
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.94 E-value=0.12 Score=48.80 Aligned_cols=133 Identities=10% Similarity=0.046 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
+...|+..-|..-+..|..+|.+.++. +..+ ++..++++|..||. ++..-|.++|+-=.+..| -+..--+.-++-
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~Yldf 444 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDF 444 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 447788888888999999999999995 6777 89999999999995 578999999986433322 233444667888
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDR--SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.+.++=..|..+|+.....++.||. ..|..+|+-=..-|++..+.++-+.+...|+.
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 88999999999999999988887765 58999999999999999999999999999883
No 85
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.036 Score=51.12 Aligned_cols=128 Identities=7% Similarity=0.077 Sum_probs=87.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
+-+-|--..+...|++++.+..+- +..|....+-|-+.|-+.|+-.+|.+.+-+-- ++ ++.|..|..=|-.-|...
T Consensus 564 ianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsy-ry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cc-cCcchHHHHHHHHHHHhh
Confidence 334444445666666666555442 44456666777777777777777776655443 22 556666666566666666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhCC
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE-AMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~-~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.-+++|..+|+.- .=+.|+..-|..||..|. |.|++.+|.+++++....||+
T Consensus 640 qf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 640 QFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 6777777777753 457899999998887766 579999999999998888886
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.90 E-value=0.083 Score=54.69 Aligned_cols=127 Identities=6% Similarity=-0.041 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC---HHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE---IQGFNALL 200 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd---~~tyn~lI 200 (275)
+..|..-|.+.++.++|-++|+.|.+++| -....|...+..+.+.++-+.|..++.+-.+ +-|- +..-.--+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHH
Confidence 44788888888999999999999988744 6777888999999999988889888887653 3444 22222223
Q ss_pred HHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
..=.+.|+.+.+..+|+..... --+ ...|+..|+.=.+.|..+.+..+|++.+++
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 3334688999999999988743 222 348999999999999999999999986643
No 87
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.84 E-value=0.014 Score=51.31 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
.+|..+++..-+.+..+.|..+|.+..+...+..++....++|-- ...++.+.|..+|+...+. +.-|..-+..-|+-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 579999999999999999999999998654466777776666643 3357788899999998743 45566778899999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 023910 238 LEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~ 255 (275)
+.+.|+.+.|..+|+...
T Consensus 80 l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 80 LIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHTT-HHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHH
Confidence 999999999999999854
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.83 E-value=0.0085 Score=40.17 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=42.8
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
.+.|++++|.++|+..... .+-|...+-.|...|.+.|++++|..+++.+... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHHH
Confidence 3567778888888887664 2336666667778888888888888888777643 45655555544
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.82 E-value=0.086 Score=44.55 Aligned_cols=130 Identities=12% Similarity=-0.055 Sum_probs=92.2
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
.+|..|++++|...|++-....-+.--..||..+--+-.+.|+.+.|.+.|+.-... -+-+..+.-.+-....+.|+.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccc
Confidence 456777888888888877664333334566777777777778888888888776532 122335566677777778888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 210 DLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 210 ~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
-.|..+++.....|. ++..+.-..|..--+.|+-+.|.++=..+.+.||...
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888888777765555 7888888888888888888888888888888888753
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.29 Score=43.44 Aligned_cols=132 Identities=11% Similarity=-0.028 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH-
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL- 200 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI- 200 (275)
.|+.-|-...+|++|+++-.++.+- |-.+. ..-|--|-..+....+++.|..++.+-... .|+.+--+.++
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG 221 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---Cccceehhhhhh
Confidence 6777888888888888888877773 22222 122333333444457778888888776532 34444333333
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+.+...|++..|.+.++...+.+..--..+...|..+|...|+.++....+.++.+.++..
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 4567789999999999998877665556677889999999999999999999998888774
No 91
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.80 E-value=0.06 Score=49.67 Aligned_cols=89 Identities=7% Similarity=-0.112 Sum_probs=67.1
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYA--DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn--~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
.+.|+.+.|.+.|.++.+. .|+...+- ..-..+...|++++|...++++.+. -+-+......+...|.+.|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhH
Confidence 5788899999999988763 45543333 3356778889999999999888643 244567788888888999999
Q ss_pred hHHHHHHHHHHhCCCC
Q 023910 210 DLVVDCYELMKTVGCE 225 (275)
Q Consensus 210 ~~A~~l~~~M~~~g~~ 225 (275)
++|.+++..+.+.+..
T Consensus 204 ~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 204 SSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999888888866554
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.79 E-value=0.0031 Score=44.55 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 023910 170 NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR-SSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~li~~~~~~g~~~~A~ 248 (275)
.|++++|+.+|+++.....-.|+...+-.+-.+|.+.|++++|..+++. . .+.|+. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999985421123455566689999999999999999988 3 222222 33335578899999999999
Q ss_pred HHHHH
Q 023910 249 IIRQD 253 (275)
Q Consensus 249 ~l~~~ 253 (275)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99976
No 93
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.011 Score=46.28 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----hCCCCCCHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-----TVGCEPDRSS 230 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~t 230 (275)
+...++..+...|++++|+.+...+... -+.|...|-.+|.+|.+.|+..+|.++|+.+. +-|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555566666666666666532 34455666666666666666666666666554 3466666554
No 94
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.71 E-value=0.011 Score=51.32 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh----------------hHHHH
Q 023910 156 QVSLYADMIQVFGTN-----GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR----------------DLVVD 214 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~-----g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~----------------~~A~~ 214 (275)
|-.+|-+.+.-+... ++++-....++.|+ ++|+.-|..+|+.||+.+=+..-+ +=+..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 445555555444333 44555555566665 357777777777777766554321 34778
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 215 l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
++++|...|+.||..+-..||+++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999888764
No 95
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.67 E-value=0.054 Score=49.28 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=77.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
-..+...|+++.|+++|++..+. -.-+...|..+-.+|.+.|++++|+..++..... -..+...|..+-.+|.+.|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 45566788999999999998874 2345777888888889999999999999888642 2336677888888888999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
++++|...|+...+ +.|+......++.
T Consensus 85 ~~~eA~~~~~~al~--l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGAS--LAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 99999999988774 3455555554443
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.65 E-value=0.064 Score=48.81 Aligned_cols=93 Identities=8% Similarity=-0.121 Sum_probs=71.6
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 165 ~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
..+...|++++|+++|++.... -.-+...|..+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3455778899999998888643 34456777788888888899999999888887532 22556777778888888999
Q ss_pred HHHHHHHHHHHHHhCC
Q 023910 245 AFSGIIRQDAFKYYGD 260 (275)
Q Consensus 245 ~~A~~l~~~m~~~~~~ 260 (275)
++|...++..++..|.
T Consensus 87 ~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 87 QTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999888888776
No 97
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.63 E-value=0.33 Score=46.15 Aligned_cols=131 Identities=10% Similarity=0.047 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHc--CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCCC-CcCHH-
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKE--QWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT----ENSL-EPEIQ- 194 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~--~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G~-~pd~~- 194 (275)
+-..|...+++++|..+|+++... ..+.++ ..+++.|=..|++.|++++|...+++-.+ ..|. .|.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444666788999999999888551 112233 45666677789999999888776665321 1222 23333
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH---hCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMK---TVGCEPD----RSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~---~~g~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
-++.+...|+..+++++|..++..-. ..-..++ ..+|+.|-..|...|++++|++++++.+..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45667777888999999999887654 2222333 358899999999999999999999997754
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.26 Score=42.31 Aligned_cols=123 Identities=11% Similarity=-0.079 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
..+....+.|++..|...|.+...- -.+|..+||.+=-+|-+.|+.++|..-|.+-.+- ..-+...+|.|--.|.-
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L 180 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHH
Confidence 3566677789999999999999773 5778999999999999999999999988887642 22345678888888899
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
.|+.++|..++..-...+-. |...-..|.-.....|++++|+++...
T Consensus 181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999988765543 444445666667789999999877654
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.53 E-value=0.1 Score=46.77 Aligned_cols=124 Identities=8% Similarity=-0.088 Sum_probs=90.2
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQV-SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~-~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
.+..+.+.+.++.. .+..|+. .....+-..+...|++++|+..+++.... -+.+...+..+-..|...|++++|
T Consensus 93 ~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 93 SGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred ccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 45566666666552 1234443 44455667888999999999999998753 344567788888899999999999
Q ss_pred HHHHHHHHhCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 213 VDCYELMKTVG-CEPDR--SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 213 ~~l~~~M~~~g-~~pd~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
..++++..+.. ..|+. ..|..+...+...|++++|.+++++.....+...
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~ 220 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD 220 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC
Confidence 99999877432 23443 3466788899999999999999999865555333
No 100
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.31 Score=45.26 Aligned_cols=160 Identities=9% Similarity=-0.020 Sum_probs=91.1
Q ss_pred cHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH-------------------hHHHHHHHHHhcCCHHHHHHHHHHhH
Q 023910 88 SIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF-------------------DMIAVLRELLRQNHCLLALKVFEDIR 148 (275)
Q Consensus 88 ~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~li~~~~~~g~~~~A~~lf~~m~ 148 (275)
-+.|+.+|+++.+...-.-.+..+|..++--.... .+..+-+-|.-.++.+.|...|+...
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 34778888888776332222445555443211110 11133444555678999999999987
Q ss_pred HcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-
Q 023910 149 KEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP- 226 (275)
Q Consensus 149 ~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p- 226 (275)
+ +.| ....||-|-+-|...++...|++-+..-.+- .+-|-..|-.|=.+|.-.+.+.=|+-.|++-. .++|
T Consensus 358 k---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~--~~kPn 430 (559)
T KOG1155|consen 358 K---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL--ELKPN 430 (559)
T ss_pred h---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHH--hcCCC
Confidence 7 244 4577888878888888888888877765421 34444555555555555555555555555432 2333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 227 DRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 227 d~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
|...|.+|-++|.+.+++++|++.+...
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.48 E-value=0.11 Score=53.76 Aligned_cols=143 Identities=14% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKP---QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p---~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
+...|.-....++.+.|++++++..+..++.- -...|.++++.-.-.|.-+...++|++.-+ + +.| -..|..|.
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-y-cd~-~~V~~~L~ 1537 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-Y-CDA-YTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-h-cch-HHHHHHHH
Confidence 34667777778889999999998877522221 146788888888777877888888888753 2 333 35588888
Q ss_pred HHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc---cchHHHHHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMKT-VGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL---EFLEEDEEDI 271 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~---~~~~e~~~~~ 271 (275)
.-|-+.++.++|.++++.|.+ -| -....|...++.+.+..+-+.|.+++.+.++..|+- ++|.......
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 889999999999999999973 34 345578888888888888889999999888888883 4555554433
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.47 E-value=0.013 Score=39.29 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=43.0
Q ss_pred HcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 023910 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235 (275)
Q Consensus 168 ~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 235 (275)
.+.|++++|+++|++.... .+-|...+-.+..+|.+.|++++|..+++.+... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 3567788888888887643 3336677777888888888888888888877643 35545554443
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.46 E-value=0.1 Score=46.81 Aligned_cols=91 Identities=8% Similarity=-0.049 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH--HHHHHHHHHHHhC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI--QGFNALLKCLVGF 206 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~--~tyn~lI~~~~~~ 206 (275)
..+...|++++|.+.+++..+. -..+...+..+-..|...|++++|+.++++........|+. ..|..+-..+...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 4667789999999999999884 24456778888899999999999999999876431112343 3566788889999
Q ss_pred CChhHHHHHHHHHHh
Q 023910 207 KLRDLVVDCYELMKT 221 (275)
Q Consensus 207 g~~~~A~~l~~~M~~ 221 (275)
|+.++|..++++...
T Consensus 200 G~~~~A~~~~~~~~~ 214 (355)
T cd05804 200 GDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999863
No 104
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.41 E-value=0.13 Score=41.26 Aligned_cols=103 Identities=6% Similarity=-0.110 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 234 (275)
....|..+...+...|++++|+..|++......-.+ ...+|..+-..|.+.|+.++|...++...+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355667777777777888888888877753211111 23467777777888888888888887766431 2223445555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHHHHhC
Q 023910 235 INGLE-------AMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 235 i~~~~-------~~g~~~~A~~l~~~m~~~~~ 259 (275)
...+. +.|+++.|...+++....|.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 55555 77787766666665544433
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.40 E-value=0.13 Score=51.95 Aligned_cols=144 Identities=9% Similarity=0.034 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH----------
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI---------- 193 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~---------- 193 (275)
...|++.+...+++++|.++.+.-.+...-.+...-|..+ .|.+.++.+++..+ .+... +..+.
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhh--cccccchhHHHHHHH
Confidence 3478899989999999999999776642222223333333 56666777776665 33321 22232
Q ss_pred ---------HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccch
Q 023910 194 ---------QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFL 264 (275)
Q Consensus 194 ---------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 264 (275)
..+-++-.+|-+.|+.++|..+++++.+.. .-|....|-+-..|... ++++|.++.......|-+-+-.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~ 185 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQY 185 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcc
Confidence 566667777888899999999999999776 44777888888899988 9999999999988776655555
Q ss_pred HHHHHHHhhhC
Q 023910 265 EEDEEDIAAYC 275 (275)
Q Consensus 265 ~e~~~~~~~~~ 275 (275)
.++++.-.+||
T Consensus 186 ~~~~e~W~k~~ 196 (906)
T PRK14720 186 VGIEEIWSKLV 196 (906)
T ss_pred hHHHHHHHHHH
Confidence 55555444444
No 106
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.39 E-value=0.12 Score=49.51 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-HHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-IQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-~~tyn~lI~~~~ 204 (275)
.+-+++-..|++.+|...+++...- +.....+-|.|-+.|...|.+++|..+|..-. + +.|. ...+|.|-..|-
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-E--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH-h--hChhhhhhhhhHHHHHH
Confidence 4445555556666666666555442 12224445555555555555555555555543 1 2333 244555555555
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDR-SSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
+.|++++|+..+++-. .|+|+. ..|+.+-..|-..|+.+.|.+.+.+.
T Consensus 400 qqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 5555555555555433 234432 23444444444444444444444443
No 107
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.39 E-value=0.24 Score=39.84 Aligned_cols=80 Identities=13% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
.+-..+...|++++|...|++..+. ...+. ...|..+-..|.+.|++++|...+++.... .+-+...+..+-..|
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 4455666789999999999988763 22221 467888888899999999999999887642 223455666666677
Q ss_pred HhCCC
Q 023910 204 VGFKL 208 (275)
Q Consensus 204 ~~~g~ 208 (275)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77666
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.39 E-value=0.025 Score=37.53 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=32.2
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..+.+.|++++|..+|++..+.. +-+...+..+-..+.+.|++++|..+++++.+..|.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666665443 114444455555566666666666666666555553
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.36 E-value=0.12 Score=41.35 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKP--QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p--~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
.+...+...|++++|...|+..... .-.| ...+|..+-..|.+.|++++|+..++..... .+.+..+++.+-..|
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~ 116 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3444555679999999999999763 1122 2358888999999999999999999988642 233456677777777
Q ss_pred H-------hCCChhHHHHHHHHH
Q 023910 204 V-------GFKLRDLVVDCYELM 219 (275)
Q Consensus 204 ~-------~~g~~~~A~~l~~~M 219 (275)
. +.|++++|...+++-
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHH
Confidence 7 778888776666544
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.36 E-value=0.16 Score=42.13 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHH-HHcCCC--HHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV-FGTNGL--FQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~-~~~~g~--~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+-..|...|++++|...|+...+. -.-|...+..+-.+ |.+.|+ .++|.+++++..+. -.-|...+..+-..
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~ 153 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHH
Confidence 4455677899999999999999883 23367777777776 467777 59999999999753 34477888899999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
+.+.|++++|...|+.+.+. ..|+..-+..+ .+
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i-~~ 186 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDL-NSPRVNRTQLV-ES 186 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH-HH
Confidence 99999999999999999854 34555454433 54
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.032 Score=55.54 Aligned_cols=121 Identities=11% Similarity=0.054 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~ 214 (275)
+..+.|+++|.+..+. ..-|...-|-+--.++.+|++++|..+|.+.... ..-+.-+|-.+-++|...|.+..|++
T Consensus 626 k~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 4455556665555552 2335555555555555556666666666555432 22233345555555555666666666
Q ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 215 CYELMK-TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 215 l~~~M~-~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.|+.-. ..+-+-+....+.|-.++.++|.+.+|.+..-......|
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 555433 223333444555555555555555555555555444444
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.32 E-value=0.47 Score=44.20 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
...+-+.+.++.++|.+.|+.+... .|+ ...+-.+-++|.+.|++.+|+.+++.-..+ .+-|...|..|-.+|.
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~ 419 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHH
Confidence 4566778899999999999999884 566 666777789999999999999999998753 6788999999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
..|+..+|..-..++ |...|++++|........+.+
T Consensus 420 ~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 420 ELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhc
Confidence 999999888766554 455677777776666655443
No 113
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.14 Score=49.04 Aligned_cols=130 Identities=9% Similarity=-0.059 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
-+--.|.|.++++.|.-.|+...+ +.| |.+.-..+...+-+.|+.++|+++|++--.- -.-|..+=--....+.
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILF 568 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHH
Confidence 455667889999999999999877 344 6777788888899999999999999986531 1224444445566677
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
-.++.++|+..++++++. +.-+...|-.+-..|.+.|+.+.|..-|.-+.++-|+-
T Consensus 569 ~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 789999999999999863 33355677888899999999999999999999998884
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.27 E-value=0.12 Score=51.10 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+.++|...|++.+|+++|....... ..-+...|--+-.+|-..|..++|.+.|+..... -+-+.-.=-+|=..|-
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHH
Confidence 478889999999999999999998853 4446889999999999999999999999998743 2233334445555677
Q ss_pred hCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 205 GFKLRDLVVDCYELMK--------TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~--------~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
+.|+.++|.+.++.|. ..+..|+...--...+.|...|+.++-.+.-..|...+-+.+
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~ 560 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKR 560 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999965 345678888778888889999999998888888777665544
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.064 Score=53.52 Aligned_cols=130 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC------------CCHHHHHHHHHHhHhcCCCCcC
Q 023910 126 AVLR-ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN------------GLFQHVEILYFYLKTENSLEPE 192 (275)
Q Consensus 126 ~li~-~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~------------g~~~~A~~lf~~M~~~~G~~pd 192 (275)
+++. .+.+...+..|.+=|....++..-.+|..+--+|=+.|.+. +..++|+++|.+..+. -+-|
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN 645 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKN 645 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccch
Confidence 3443 44455556666665555544333345555555555544322 3456777777776532 4556
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGC-EPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 193 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
...=|.+=-.++..|++++|..+|.+..+... -+| +|--+-+.|...|++..|.++|+...+.|.
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777777777777777777777777775544 333 566677777777777777777777655544
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.26 E-value=0.22 Score=40.06 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYR 232 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~ 232 (275)
....|..+-..|...|++++|...|++..+. .-.++ ...|..+-..|.+.|++++|...+++..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 3567788888899999999999999988643 12222 468889999999999999999999988753 34 445566
Q ss_pred HHHHHHHhcCC
Q 023910 233 TVINGLEAMEE 243 (275)
Q Consensus 233 ~li~~~~~~g~ 243 (275)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 66667777666
No 117
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.065 Score=41.83 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCCCCcCHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT----ENSLEPEIQGF 196 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G~~pd~~ty 196 (275)
+..++..+...|+++.|..+.+.+... -+-|...|-.+|.+|...|+..+|.+.|+.+.. +.|+.|+..|-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 346677778899999999999999885 355889999999999999999999999998753 46899987653
No 118
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.03 E-value=0.032 Score=38.53 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKT----VGC-EPD-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
.+|+.+-..|.+.|++++|...|++..+ .|- .|+ ..+++.+-..+...|++++|.+++++..+.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4556666666666666666666665542 221 122 4566677777777777777777777766544
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.02 E-value=0.12 Score=50.41 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
..|.+-.+...|..|+.+++.+..+ +.-..-|.-+-+-|+..|+++.|+++|-+-. .|+--|..|.+
T Consensus 737 kaieaai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k 803 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGK 803 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhc
Confidence 4566667788999999999998775 2233446677789999999999999996642 26778999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIR 251 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~ 251 (275)
+|+|++|.++-++. .|-......|-+-..-+-+.|++.+|++++
T Consensus 804 ~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 99999999986654 333444455555555555556555555443
No 120
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.45 Score=44.44 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=88.2
Q ss_pred hHHHHHHHHhhhcHHhHH--HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 023910 108 LDHVFNSKFRRLLKFDMI--AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185 (275)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~--~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~ 185 (275)
...+++..++-|-+-|-+ ..+-+=-..|.+..|.++|+...+ ..|+...|++.|+.=.+-+..+.|..+++...
T Consensus 126 ARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV- 201 (677)
T KOG1915|consen 126 ARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFV- 201 (677)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 344555555444433322 222222234778888888887755 57888888888888888888888888888875
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 186 ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV-G-CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 186 ~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
- +.|++.+|---..-=-++|.+.-|..+|+.-.+. | -.-+...|++...-=.+...++.|.-+++-.++..|
T Consensus 202 ~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 202 L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 6688888877777777788888888777765532 1 111222333333333344455555555555444333
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.12 Score=48.85 Aligned_cols=138 Identities=14% Similarity=0.013 Sum_probs=101.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCC----cCHHHHHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLE----PEIQGFNALLK 201 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G~~----pd~~tyn~lI~ 201 (275)
+--.|.+.+..+.|.+.|.+.... .+-|....|-+--.....+.+.+|...|+.-... +.+. .-..+++.|=+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 344566778899999999888663 3446677777766666778899999988875510 0111 23456888888
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHH
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED 267 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~ 267 (275)
+|-+.++.++|+..|+.-... ..-|..||.++--.|...|+++.|.+.|.+...+-|.-.++.++
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 888999999999999877633 23367788888888888999999999999988777765555554
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.91 E-value=0.6 Score=36.42 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
.+-..+...|++++|...|++.... .-.|+ ....-.|-..+...|++++|+..++..... ......+...=+.|
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHH
Confidence 4567788899999999999999885 32232 234445678888999999999999876432 33445667778889
Q ss_pred HhCCChhHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYEL 218 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~ 218 (275)
.+.|+.++|...|+.
T Consensus 129 ~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 129 LAQGDYDEARAAYQK 143 (145)
T ss_pred HHCCCHHHHHHHHHH
Confidence 999999999999875
No 123
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.91 E-value=0.069 Score=46.54 Aligned_cols=73 Identities=8% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCH----------------HHHHHHHHHhHhcCCCCcCHHHHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF----------------QHVEILYFYLKTENSLEPEIQGFNA 198 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~----------------~~A~~lf~~M~~~~G~~pd~~tyn~ 198 (275)
+.++--.-.+..|++ +|+.-|..+|+.||+.+-+..-. +=+++++++|+.. |+.||-.+--.
T Consensus 86 ~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~ 163 (406)
T KOG3941|consen 86 THVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDI 163 (406)
T ss_pred chHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHc-CCCCchHHHHH
Confidence 334444455677877 79999999999999998876432 4478899999875 99999999999
Q ss_pred HHHHHHhCCCh
Q 023910 199 LLKCLVGFKLR 209 (275)
Q Consensus 199 lI~~~~~~g~~ 209 (275)
||+++++.|-.
T Consensus 164 lvn~FGr~~~p 174 (406)
T KOG3941|consen 164 LVNAFGRWNFP 174 (406)
T ss_pred HHHHhcccccc
Confidence 99999998853
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.88 E-value=0.44 Score=47.26 Aligned_cols=127 Identities=9% Similarity=-0.032 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-HHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-IQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-~~tyn~lI~~~~ 204 (275)
.++....+.....+++.-.....++ +..++-.+--|-....+.|..++|+.+++.... +.|| ......+...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVK 131 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHH
Confidence 3444444555555555544555453 667788898899999999999999999999974 4555 567788899999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPD-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
+.+++++|...++...+. .|| ......+-.++.+.|++++|.++|++.....|
T Consensus 132 ~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p 185 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP 185 (694)
T ss_pred HhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC
Confidence 999999999999998753 454 44556777788899999999999999886544
No 125
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.78 E-value=0.31 Score=43.47 Aligned_cols=124 Identities=8% Similarity=-0.004 Sum_probs=60.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH------------------------
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY------------------------ 182 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~------------------------ 182 (275)
+-.+|.+.|.+.+|.+.|+.-.++ .|-+-||--|-+.|.+-.++..|+.+|.+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 334455555555555555554442 33444444455555555555555555544
Q ss_pred ----------hHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023910 183 ----------LKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252 (275)
Q Consensus 183 ----------M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 252 (275)
..+. ..-|+....++-.+|.-.++++-|++++..+.+.|+.. ...|+.+--+|.-++++|.+..-|+
T Consensus 306 ~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-peLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-PELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-hHHHhhHHHHHHhhcchhhhHHHHH
Confidence 3321 22333333334444445555566666666665555542 2234444444555566666666555
Q ss_pred HHHH
Q 023910 253 DAFK 256 (275)
Q Consensus 253 ~m~~ 256 (275)
....
T Consensus 383 RAls 386 (478)
T KOG1129|consen 383 RALS 386 (478)
T ss_pred HHHh
Confidence 5443
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.73 E-value=0.53 Score=44.99 Aligned_cols=128 Identities=10% Similarity=0.013 Sum_probs=99.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
-..|...|+.++|++..++-.+. .|+ +-.|..--+.|-..|++++|.+.+++-+.- =.-|...=+-....+.|+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHC
Confidence 34466789999999999988773 566 667777788899999999999999887642 244778888888899999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSY--------RTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty--------~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|++++|..++......+..|-...+ .-.-.+|.|.|++..|..-|....+.|..
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988866655443222 34557788999999999988887766544
No 127
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.3 Score=45.67 Aligned_cols=122 Identities=13% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh-c---CCCCcCHHH--HHHHHHHH
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT-E---NSLEPEIQG--FNALLKCL 203 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~-~---~G~~pd~~t--yn~lI~~~ 203 (275)
+.-|.+++++++..|++-+++ +...+-.||-.-..+...+++++|++.|+.-.. + .++..+.-+ --+++-.-
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 344678899999999999887 455566777777888888999999998887542 1 112112211 12222222
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
- .++++.|.++++.-.+-.=+ ....|-+|-..-...|++++|.++|++..
T Consensus 515 w-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 W-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 37888888888876643322 34678899999999999999999998854
No 128
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.13 Score=45.83 Aligned_cols=104 Identities=14% Similarity=-0.066 Sum_probs=83.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 023910 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231 (275)
Q Consensus 152 g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 231 (275)
|+..|-.==+-|-++|.+.|.+.+|++.|+.-.++ .|-+.||-.|-+.|.+...++.|+.+|.+-.+ ..|-.+||
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~ 292 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY 292 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh
Confidence 44444444466788999999999999999887644 57888999999999999999999999998664 35666776
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 232 R-TVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 232 ~-~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
- -+-..+-..++.++|.++++...+..+.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 4 4566677789999999999998876553
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.65 E-value=0.24 Score=49.25 Aligned_cols=88 Identities=11% Similarity=-0.040 Sum_probs=43.4
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 248 (275)
|.|+.++|..+++.....+ .. |..|..++-..|-..|..++|..+|+... +.-|+..--..+..+|.|.+.+.+-.
T Consensus 55 r~gk~~ea~~~Le~~~~~~-~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~--~~~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLK-GT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN--QKYPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhcCchhHHHHHhhhccCC-CC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544321 11 55555555555555555555555555432 23344444445555555555555544
Q ss_pred HHHHHHHHHhCC
Q 023910 249 IIRQDAFKYYGD 260 (275)
Q Consensus 249 ~l~~~m~~~~~~ 260 (275)
+.--+|.+.+|+
T Consensus 131 kaa~~LyK~~pk 142 (932)
T KOG2053|consen 131 KAALQLYKNFPK 142 (932)
T ss_pred HHHHHHHHhCCc
Confidence 444444444444
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.60 E-value=0.68 Score=39.75 Aligned_cols=121 Identities=13% Similarity=0.008 Sum_probs=94.3
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhH
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~ 211 (275)
--.|+-+.+..+...... ....|...-+.++....+.|++.+|+..|.+... .-++|..+||.+=-+|-+.|++++
T Consensus 77 ~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 77 YLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhH
Confidence 345666777766666544 2455666777799999999999999999999973 578999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
|..-|.+-.+--.. +...+|-|--.|.-.|+++.|..++......
T Consensus 153 Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 153 ARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999887753221 2235566666777889999999999886543
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.54 E-value=0.51 Score=43.54 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-QGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~lI~~~~ 204 (275)
-+...+...++-.+|.++.++..++ .+-|....+.-.+.|.+.++.+.|+.+.++... +.|+. .+|..|..+|.
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHH
Confidence 3445555677788999999998874 344677777777889999999999999999963 56666 59999999999
Q ss_pred hCCChhHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMK 220 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~ 220 (275)
+.|+++.|+-.++.|-
T Consensus 280 ~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 280 QLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHhcCc
Confidence 9999999999888664
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.53 E-value=0.54 Score=37.51 Aligned_cols=90 Identities=9% Similarity=0.034 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
++-..+...|++++|.++|+-... +.|. ..-|-.|=-.|-..|++++|+..|...-.- . +-|...|-.+=.++.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHHHH
Confidence 444455566777777777766655 2333 333444444555556677777766665421 1 224455555556666
Q ss_pred hCCChhHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMK 220 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~ 220 (275)
+.|+.+.|..-|+.-.
T Consensus 115 ~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 115 ACDNVCYAIKALKAVV 130 (157)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666544
No 133
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=0.81 Score=42.78 Aligned_cols=127 Identities=18% Similarity=0.212 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQV-SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+++=.++..+..|..+|+..... .|-+ ..|---+.+=-..|++..|.++|+... + ..||...|++-|+-=.
T Consensus 112 kYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~-~--w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 112 KYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGARQIFERWM-E--WEPDEQAWLSFIKFEL 185 (677)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHHHHHHHHH-c--CCCcHHHHHHHHHHHH
Confidence 4556666788899999999988773 4443 455555666667789999999999875 3 7999999999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+-..++.|..+++...- +.|++.+|--...-=-++|....|..+++..++.+++
T Consensus 186 RykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999874 4599999998888888999999999999999998887
No 134
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.49 E-value=0.14 Score=45.86 Aligned_cols=108 Identities=8% Similarity=0.056 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+...|.-+...|+...|.++-.+. . .||..-|-.-|.+|+..|++++-..+-.. .+ ..+-|-..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK----sPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KK----SPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC----CCCChHHHHHH
Confidence 3446677778889988888776665 2 47899999999999999999988776432 22 34889999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 252 (275)
|.+.|...+|..+... .++.--+..|.++|++.+|.+.-.
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999887 244677888999999999976643
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.40 E-value=1.8 Score=41.52 Aligned_cols=128 Identities=8% Similarity=-0.036 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcC-------------CCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHhHhcCCCC
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQ-------------WYKPQVSLY--ADMIQVFGTNGLFQHVEILYFYLKTENSLE 190 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~-------------g~~p~~~ty--n~Li~~~~~~g~~~~A~~lf~~M~~~~G~~ 190 (275)
.|-..|....+.+...+++....... .-.|+...| .-|-..|-..|++++|++..++-.. ..
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---ht 224 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HT 224 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cC
Confidence 44444444444555555555554321 123555445 4455668889999999999998764 45
Q ss_pred cC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 191 PE-IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 191 pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
|+ +..|.+--..|-+.|++++|.+..+.-+.-.. -|.+.=+-....+.|+|++++|.+++....+.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 66 56777788889999999999999998875432 37777788888999999999999988765443
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.37 E-value=0.12 Score=34.64 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME-EVAFSGIIRQDAFKY 257 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~ 257 (275)
.+|..+=..+.+.|++++|...|++..+.. +-+...|..+-.++.+.| ++++|.+.++..++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 344444445555555555555555544321 113334444444455555 455555555555443
No 137
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.35 E-value=0.65 Score=35.86 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
...+|..+...+.......+++.+.+. + ..+...+|.||..|++.+ .++.++.+.. . ++......++..|
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHH
Confidence 346777787888899999999998885 4 367889999999999874 4555566552 1 1334445588888
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM-EEVAFSGIIRQD 253 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~-g~~~~A~~l~~~ 253 (275)
-+.+.++++..++..+.. |.-.++.+... ++++.|.+++.+
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 888888888888887642 22233333334 777777777765
No 138
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.30 E-value=1.2 Score=41.52 Aligned_cols=122 Identities=5% Similarity=-0.021 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.|-+.|-+.|+-..|++.+-+--+- +.-|..|.-=|-..|...--+++|+..|+.-. =+.|+.+-|-.||..|.+
T Consensus 597 kl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHH
Confidence 5667778889999999887766552 44456665557777777778899999999874 289999999999998876
Q ss_pred -CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 206 -FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 206 -~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
.|++.+|++++.+..+ .++-|.....-|+..+...|.- +|.++-+++
T Consensus 672 rsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred hcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 7999999999999864 5777888888899988888754 345544443
No 139
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.11 E-value=0.44 Score=44.25 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHH-HHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQW-YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF-NALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~ty-n~lI~~~ 203 (275)
..|+...|..-++.|..+|-+.++. | ..+++..|+++|..|+. |+..-|..+|+-=... -||+..| +--+.-+
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fL 476 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHHHHHH
Confidence 4677777778899999999999985 6 78899999999999884 6788899999753322 3454444 5667777
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPD--RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+-++-+.|..+|+.-.+. +.-+ ...|..+|+-=..-|++..+..+-+.|.+.||+-
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8889999999999844321 1112 3579999999999999999999999999999874
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.06 E-value=0.47 Score=40.78 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=58.7
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHH---HHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEPEI-QGF---NALLKCLVGFKLRDLVVDCYELMKT-VGCEPDRSSYRTVINGLEA 240 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~ty---n~lI~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~ty~~li~~~~~ 240 (275)
.+.+.|++++|.+.|++.... -|+. ..- --+..+|.+.++.++|...|++..+ ..-.|+. -|...+.|++.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~ 116 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTN 116 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhh
Confidence 344567777777777777643 2222 222 2334556677777777777777763 2333332 33333333321
Q ss_pred --c------------------CCHHHHHHHHHHHHHHhCCccchHHHHHHH
Q 023910 241 --M------------------EEVAFSGIIRQDAFKYYGDLEFLEEDEEDI 271 (275)
Q Consensus 241 --~------------------g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~ 271 (275)
. ....+|.+.|+++++.||+-....|.+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 0 113567788888889999877777765543
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.03 E-value=0.15 Score=33.75 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
..+.+.|++++|.++|++..+. ..-+...|..+-..+.+.|++++|...|++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666666553 12244555555566666666666666666554
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=2.1 Score=36.91 Aligned_cols=118 Identities=10% Similarity=0.014 Sum_probs=57.2
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
.+|+.+.|...+++++.++.=.+-+.-..+|. +--.|++++|+++++.+..+ -+-|.++|--=|...-..|+--+|
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHH
Confidence 45555666666666555421111111111111 12235556666666655543 244555555444444445554455
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 213 VDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 213 ~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
++-+.+..+. +.-|...|.-+-+.|...|++++|.-.++++.
T Consensus 140 Ik~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 140 IKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 5554444432 44455566666666666666666655555544
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.91 E-value=0.77 Score=39.96 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC-CcCHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV----SLYADMIQVFGTNGLFQHVEILYFYLKTENSL-EPEIQGFN 197 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~-~pd~~tyn 197 (275)
+|...+..+.+.|++++|...|+.+.+. .|+. ..+--|-..|...|++++|...|+.+.+.+-- ......+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555555556779999999999999885 3442 45666778899999999999999999753211 11123334
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~ 222 (275)
.+...|...|+.++|..+|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455677899999999999988753
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.91 E-value=0.83 Score=43.77 Aligned_cols=120 Identities=11% Similarity=-0.045 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcC--------CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 136 HCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTN--------GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~--------g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
....|..+|++..+. .|| ...|..+--+|... .+...+.+.............+...|.++--.+...
T Consensus 357 ~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 357 SLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 477899999999884 566 34444433333221 122333444433221112334557788776666678
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.+++...+-|.
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999988665 78899999999999999999999999998877554
No 145
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.79 E-value=0.61 Score=38.76 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHHhCCccchHHHHHHHh
Q 023910 241 MEEVAFSGIIRQDAFKYYGDLEFLEEDEEDIA 272 (275)
Q Consensus 241 ~g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~~ 272 (275)
.+...+|...|+++++.||+..+..+...++.
T Consensus 103 ~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 103 QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA 134 (203)
T ss_dssp -HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence 34567889999999999999888877766543
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.79 E-value=2.3 Score=36.44 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=15.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCccchHH
Q 023910 238 LEAMEEVAFSGIIRQDAFKYYGDLEFLEE 266 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~e 266 (275)
|.+.|.+.-|..=++.+.+.||.....+|
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~e 213 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRD 213 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHH
Confidence 44555555555555555555555444443
No 147
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.73 E-value=0.63 Score=43.30 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV----SLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
.++.+-..|.+.|++++|+..|++-.+ +.|+. .+|..+-.+|.+.|+.++|++.|++..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556666667777777777776655 24552 346667777777777777777776654
No 148
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.68 E-value=1.9 Score=39.33 Aligned_cols=127 Identities=13% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-------VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNA 198 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-------~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~ 198 (275)
-....|.+.|.+.....+...|.+. |.--| ..+|+.+++-....+..+.-...|++...+ .+-+...-.+
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~ 268 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVA 268 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHH
Confidence 5677888889999999999999885 55444 357777777666666666655566666532 3444555556
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh--------------------------------CCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKT--------------------------------VGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~--------------------------------~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
++.=+.+.|+.++|.++..+-.+ .+-.| ..+.+|=..|.+.+.+.+
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHH
Confidence 66666777777777766554432 33334 467788888999999999
Q ss_pred HHHHHHHHHHH
Q 023910 247 SGIIRQDAFKY 257 (275)
Q Consensus 247 A~~l~~~m~~~ 257 (275)
|.+.|+...+.
T Consensus 347 A~~~leaAl~~ 357 (400)
T COG3071 347 ASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHhc
Confidence 99999986654
No 149
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=1.7 Score=44.41 Aligned_cols=120 Identities=8% Similarity=0.060 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCC---------------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQW---------------------YKPQVSLYADMIQVFGTNGLFQHVEILYF 181 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g---------------------~~p~~~tyn~Li~~~~~~g~~~~A~~lf~ 181 (275)
|.-.+-+-....+-.++|+.+|+..... + -.-....|+.|-.+--+.|.+.+|++-|-
T Consensus 1050 Da~~ia~iai~~~LyEEAF~ifkkf~~n-~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1050 DAPDIAEIAIENQLYEEAFAIFKKFDMN-VSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHhccc-HHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3334444455566678888888764320 0 00023456666666666677777766653
Q ss_pred HhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023910 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252 (275)
Q Consensus 182 ~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 252 (275)
+- + |...|.-+|+...+.|.+++-..++..-++..-+|... +.||-+|++.+++.+.++++.
T Consensus 1129 ka--d-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1129 KA--D-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred hc--C-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 32 2 67789999999999999999999888777777777654 478888888888877666553
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.61 E-value=1.1 Score=39.26 Aligned_cols=100 Identities=7% Similarity=0.080 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHhHh---cCCCCcC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-----CCC
Q 023910 159 LYADMIQVFGTN-GLFQHVEILYFYLKT---ENSLEPE--IQGFNALLKCLVGFKLRDLVVDCYELMKTVGC-----EPD 227 (275)
Q Consensus 159 tyn~Li~~~~~~-g~~~~A~~lf~~M~~---~~G~~pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-----~pd 227 (275)
.+.-+-..|-.. |++++|++.|++-.. ..| .+. ..++..+...+.+.|++++|.++|++....-. +.+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 444445566666 788888887776432 112 111 35666777778888888888888888764322 222
Q ss_pred HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 228 RSS--YRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 228 ~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
... ++.+| .+...|+...|.+.+++.....|.
T Consensus 195 ~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 195 AKEYFLKAIL-CHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 222 23433 455568888888888887766554
No 151
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.59 E-value=0.13 Score=35.44 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCC-CcC-HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSL-EPE-IQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~-~pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
..+|+.+-..|...|++++|+..|++... ..|- .|+ ..+++.+-..|...|++++|.+.+++-.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35788888899999999999998887642 2221 233 6788888899999999999999988643
No 152
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.56 E-value=5 Score=39.24 Aligned_cols=121 Identities=8% Similarity=-0.048 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
.|..++-..+|++.... ++-..+.|-...+-+-..|++..|..++...-.- ..-+...|-+-+..-..+..+++|.
T Consensus 563 hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred cCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHH
Confidence 57888888888888774 5667777877778888889999999999888743 3446788888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+|..-.. ..|+...|.--++..--.+..++|.+++++..+.||.
T Consensus 639 ~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 639 DLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99998664 5667777766666666688999999999999998886
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.44 E-value=1.6 Score=33.13 Aligned_cols=85 Identities=9% Similarity=-0.014 Sum_probs=53.7
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC------HHHHHHHHH
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE------IQGFNALLK 201 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd------~~tyn~lI~ 201 (275)
.+-..|+.++|..+|++-... |.... ...+-.+-+.|...|++++|+.+|++...+ .|+ ...|-+ -
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~A--l 83 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLA--L 83 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHH--H
Confidence 344568888888888888773 65544 234444556677778888888888877643 133 222222 2
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~ 220 (275)
++...|+.++|++.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5566788888887765443
No 154
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=2.2 Score=37.83 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHhHHcCCC--CCCHHHHHHHHHHHHcCCCH----HHHHHHHHHhHhcCCCCcCH-HHHHHHHHHHHhCC-
Q 023910 136 HCLLALKVFEDIRKEQWY--KPQVSLYADMIQVFGTNGLF----QHVEILYFYLKTENSLEPEI-QGFNALLKCLVGFK- 207 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~--~p~~~tyn~Li~~~~~~g~~----~~A~~lf~~M~~~~G~~pd~-~tyn~lI~~~~~~g- 207 (275)
....|..+|+.|++.+.+ .++-+++.+|+.+ ..+++ +.++..|+.+... |+..+- .-+-+-|-+++..-
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~ 194 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDD 194 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccc
Confidence 367899999999997654 4567888888776 44444 5677888888763 665543 34444444444322
Q ss_pred --ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhC
Q 023910 208 --LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA-FSGIIRQDAFKYYG 259 (275)
Q Consensus 208 --~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~-~A~~l~~~m~~~~~ 259 (275)
.+.++.++++.+++.|+++...+|.++-= ++-.+..+ +..+-+.++.+...
T Consensus 195 ~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl-Lall~~~~~~~~~~i~ev~~~L~ 248 (297)
T PF13170_consen 195 QEKVARVIELYNALKKNGVKIKYMHYPTLGL-LALLEDPEEKIVEEIKEVIDELK 248 (297)
T ss_pred hHHHHHHHHHHHHHHHcCCccccccccHHHH-HHhcCCchHHHHHHHHHHHHHHh
Confidence 24578899999999999999888875533 33333333 44444445444433
No 155
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.19 E-value=0.7 Score=36.24 Aligned_cols=119 Identities=10% Similarity=0.128 Sum_probs=69.9
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
.+.|++++|.+.|+.+..++...| ....-=-|+.+|.+.|++++|...+++..+-+=-.|+ +-|--.+.|++.-...+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHHhh
Confidence 367788888888888877643333 2344445777788888888888777776543222333 44555555544332222
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHHHH
Q 023910 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEE 269 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~ 269 (275)
..|..+. +..-|. +...+|..-|+++++.||+.....+...
T Consensus 100 ---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 100 ---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred ---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 2222222 222221 2245888889999999998877666544
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.13 E-value=0.37 Score=32.06 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC-ChhHHHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK-LRDLVVDCYELMK 220 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~ 220 (275)
+..+|..+=..+.+.|++++|+..|++..+- -+-+...|..+=.+|.+.| ++++|...|+.-.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4556677777777777777777777776542 2335566777777777777 5777777776543
No 157
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.21 Score=44.19 Aligned_cols=48 Identities=8% Similarity=-0.066 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 172 ~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
++++++.++..=. .+|+-||-+|++.+|+.+.+.++..+|.++...|.
T Consensus 115 ~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444444444332 24555555555555555555555555555544444
No 158
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=3.8 Score=38.34 Aligned_cols=124 Identities=10% Similarity=0.133 Sum_probs=95.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFK 207 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g 207 (275)
..|........|.+-++...+- .+.|-..|-.|-.+|.-.+.+.=|+-.|++-.. ++| |...|.+|=.+|.+.+
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhc
Confidence 4566667777788888777663 455788888888888888888888888887752 444 5688888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
++++|...|..-..-|-. +...|.-|-+.|-+.++..+|...++.-.+.+
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 888888888887755433 55778888888888888888888888866655
No 159
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.90 E-value=2.9 Score=39.57 Aligned_cols=123 Identities=9% Similarity=-0.027 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHhHhc--CCCCcCHHHHHHHHHHHHhCCChh
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMI-QVFGTNGLFQHVEILYFYLKTE--NSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li-~~~~~~g~~~~A~~lf~~M~~~--~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
....+.|.++++++.++ -|+...|.-.- +.+...|++++|++.|++.... .--+.....|=-+.-.+.-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45788999999999996 57887776555 4566779999999999964321 001223344555556678899999
Q ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhCC
Q 023910 211 LVVDCYELMK-TVGCEPDRSSYRTVINGLEAMEEV-------AFSGIIRQDAFKYYGD 260 (275)
Q Consensus 211 ~A~~l~~~M~-~~g~~pd~~ty~~li~~~~~~g~~-------~~A~~l~~~m~~~~~~ 260 (275)
+|.+.|..+. ++...+-.++|-.-.. +...|+. ++|.++|.+.....++
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c-~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAAC-LLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH-HHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999999 4566666555544333 4566777 8888888887776664
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.87 E-value=1.5 Score=33.33 Aligned_cols=88 Identities=14% Similarity=-0.037 Sum_probs=63.9
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 023910 165 QVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD----RSSYRTVINGL 238 (275)
Q Consensus 165 ~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~li~~~ 238 (275)
.++-..|+.++|+.+|++-... |.... ...+-.+-+.|-..|++++|..+|++....- |+ ...-..+--++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3566789999999999998754 76655 3456667777889999999999999887431 33 11112233467
Q ss_pred HhcCCHHHHHHHHHHHH
Q 023910 239 EAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 239 ~~~g~~~~A~~l~~~m~ 255 (275)
...|+.++|.+.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88999999998886643
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.45 E-value=5.9 Score=37.82 Aligned_cols=114 Identities=10% Similarity=0.135 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCCChhHHHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFKLRDLVVDC 215 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g~~~~A~~l 215 (275)
.+....++++........|+.+ |-.+|+.--+..-++.|..+|.+..++ +..+ ++..++++|.-|| .++.+.|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLV-YCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 5556677777766545666654 888888888888899999999999876 6777 9999999999887 6778999999
Q ss_pred HHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 216 YEL-MKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 216 ~~~-M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
|+. |+..|-.|- --..-++-+.+.++-..|..+|+...
T Consensus 424 FeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 424 FELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 985 444443332 22456666666666666666665544
No 162
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.35 E-value=1.2 Score=39.00 Aligned_cols=77 Identities=10% Similarity=0.031 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-----TVGCEPDRSSYRT 233 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~ty~~ 233 (275)
+++.++..+...|+.+.+.+.++++-.. -+-|...|-.||.+|.+.|+...|.+.|+.++ +-|+.|-..+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4444555555555555555555554422 33445555555555555555555555555443 2455555554444
Q ss_pred HHHH
Q 023910 234 VING 237 (275)
Q Consensus 234 li~~ 237 (275)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 163
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.33 E-value=2 Score=37.71 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCCCCcCHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT----ENSLEPEIQGFNAL 199 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G~~pd~~tyn~l 199 (275)
+..++..+..+|+++.+...++++...+ .-|...|-.||.+|.++|+...|+..|+.+++ +.|+.|-..+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4478888889999999999999998852 45889999999999999999999999998874 56999999988887
Q ss_pred HHHHH
Q 023910 200 LKCLV 204 (275)
Q Consensus 200 I~~~~ 204 (275)
.....
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 77733
No 164
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.75 Score=43.70 Aligned_cols=104 Identities=9% Similarity=-0.029 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHhHHcC-CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 134 QNHCLLALKVFEDIRKEQ-WYKP----QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~-g~~p----~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
.+.+.+|..+|..-.... ...+ -..+++.|-..|.+.++.++|+..|+.-..- .+-|..||.++--.|...|+
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcC
Confidence 467899999998776310 1111 2456888889999999999999999987642 56689999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 023910 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 209 ~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~ 241 (275)
++.|.+.|.+ .-.+.||..+-..++..+...
T Consensus 505 ld~Aid~fhK--aL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 505 LDKAIDHFHK--ALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHH--HHhcCCccHHHHHHHHHHHHh
Confidence 9999999997 457899988888888765543
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.27 E-value=0.67 Score=31.14 Aligned_cols=53 Identities=6% Similarity=-0.031 Sum_probs=27.7
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
.|.+.+++++|.+.++.+... -+.+...|...=..|.+.|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455555556666655555432 22344444445555555555555555555554
No 166
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.16 E-value=0.88 Score=44.79 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=27.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
|..|-+.|..++.+++.+.-.-..+ ..|--.+-.-|-..|++..|++-|-+..
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 4555555555555555543221111 1233445555666777777777665543
No 167
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=1.9 Score=37.35 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcC---CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-hCCCCCCH-HHHH
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTEN---SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDR-SSYR 232 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~---G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~pd~-~ty~ 232 (275)
..|+.-++.|- +|++.+|..-|....+.+ -+.||..-| |-.++...|+.++|..+|..+. +.+-.|-. ...-
T Consensus 143 ~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 36999888764 677999999999987531 244555444 7788999999999999999998 44444433 4666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 233 TVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 233 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
-|-....+.|+.++|...++++++.||...
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 777788899999999999999999999853
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.06 E-value=4.5 Score=33.52 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH---h
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV---G 205 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~---~ 205 (275)
.+...|++++|.+.|+.+..+....|- ....-.+..+|.+.|++++|...|++..+...-.|.. -+...+.|.+ .
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHh
Confidence 344678888888888888775322221 2344456677778888888888888766543222322 1222222222 1
Q ss_pred ----------CCChhHHHHHHHHHHh----CCCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 206 ----------FKLRDLVVDCYELMKT----VGCEPDRSSY------------RTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 206 ----------~g~~~~A~~l~~~M~~----~g~~pd~~ty------------~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.+...+|...|+++.+ +...++.... -.+.+-|.+.|.+..|..-++.+++.||
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 1223456666666652 2222222211 2245668899999999999999999999
Q ss_pred CccchHHHHH
Q 023910 260 DLEFLEEDEE 269 (275)
Q Consensus 260 ~~~~~~e~~~ 269 (275)
.....+|...
T Consensus 173 ~t~~~~~al~ 182 (203)
T PF13525_consen 173 DTPAAEEALA 182 (203)
T ss_dssp TSHHHHHHHH
T ss_pred CCchHHHHHH
Confidence 9877776543
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=5.9 Score=34.53 Aligned_cols=131 Identities=6% Similarity=-0.006 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH---
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC--- 202 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~--- 202 (275)
.++..+.-.|.+.....++++..++ .-+.+.+.-..|.+.-.+.|+.+.|...|+..+++ .-+.|..+++.++.-
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 4444444457788888889988885 34667888888889899999999999999988776 356677777776643
Q ss_pred --HHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 --LVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 --~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.-++++-.|...|++..... -.|-.+.--+|+..| .|++.+|.+.++.|....|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCc
Confidence 334668888888888876432 222222223555555 67999999999999887775
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.88 E-value=0.66 Score=31.18 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHH
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG 195 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~t 195 (275)
..|.+.++++.|.++++.+.+. -+.+...|...-..|.+.|++++|.+.|+...+ ..|+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~---~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE---LSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH---HCCCcHH
Confidence 4678899999999999999884 234677787888899999999999999999874 3455443
No 171
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.75 E-value=2 Score=40.02 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC-CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH-HH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY-RT 233 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G-~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty-~~ 233 (275)
=...|-++|+.--+..-++.|..+|-+..+. | +.+++..|+++|.-++ .|+...|..+|+.=.. .-||...| +-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHH
Confidence 4678899999999998899999999999876 6 7899999999999877 6788899999985221 23565555 46
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 023910 234 VINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 234 li~~~~~~g~~~~A~~l~~~ 253 (275)
-+.-+.+.++-+.|..+|+.
T Consensus 472 yl~fLi~inde~naraLFet 491 (660)
T COG5107 472 YLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHH
Confidence 67778888998888888884
No 172
>PLN02789 farnesyltranstransferase
Probab=92.74 E-value=7.1 Score=35.00 Aligned_cols=146 Identities=8% Similarity=-0.060 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH---HHHHHHHhcC-CHHHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 023910 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI---AVLRELLRQN-HCLLALKVFEDIRKEQWYKPQVSLYADMIQ 165 (275)
Q Consensus 90 ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~---~li~~~~~~g-~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~ 165 (275)
++...++.+.......+.....++..+. +.+.++. ..-..+...| .+++++..++++.+. -..+..+|+.---
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~-lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIR-LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHH
Confidence 6777777777666544444444444442 3333332 1112233345 578999999988774 2446667876655
Q ss_pred HHHcCCCH--HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 023910 166 VFGTNGLF--QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 166 ~~~~~g~~--~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~ 241 (275)
.+.+.|+. ++++.+++++... -.=|...|+-.--++.+.|+++++++.++++.+.+.. |...|+..-..+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 55566653 6788888888643 3447888998888888999999999999999876544 334555444444444
No 173
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=1.3 Score=39.98 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=87.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH-HHHHh
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL-KCLVG 205 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI-~~~~~ 205 (275)
+-+.+.-..++|+.+-.++..+. .=..-|.+.|| +-.+++--|.+.+|+++|-.+... .+ -|-++|-+++ .+|.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHh
Confidence 33444444567777777777666 22344555554 556777789999999999887532 12 4677787766 56789
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSY-RTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty-~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+++++-|++++-.|... .+..+. ..+.+-|.+++.+=-|-+.|++++...|..
T Consensus 441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999998887665432 233333 455567889999999999998888776653
No 174
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=92.25 E-value=1 Score=43.98 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc--C--CC------------
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE--N--SL------------ 189 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~--~--G~------------ 189 (275)
.+|.+|+..|+.+.|..+..+-.++ +||...|..|.+..-..--+++|.++++....+ + |.
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEAD 505 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHH
Confidence 6899999999999999888887664 688888888888777766777777777754221 0 00
Q ss_pred ----------CcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 190 ----------EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 190 ----------~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
..-..||-.+=.+..+.+++..|...|..-. ...| +...||.+-.+|.+.++-.+|...+.+..+
T Consensus 506 ~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv--tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV--TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh--hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 0011233333333344556666666655433 2334 344677777777777777777777777554
No 175
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.09 E-value=14 Score=37.31 Aligned_cols=120 Identities=6% Similarity=-0.009 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVD 214 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~ 214 (275)
|+.++|.+++.+..++ -..+...|-+|-..|-+.|+.+++...+-..- + =.+-|..-|..+-.-..+.|.+++|.-
T Consensus 153 g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-H-L~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-H-LNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-h-cCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 8888888888888775 34567788888888888888888877665443 3 134456777777777778888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 215 CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 215 l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
+|.+-.+.. ++|...+--=...|-+.|+...|.+-|.++....|
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 888776542 23444444445567778888888888888877777
No 176
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=5.5 Score=40.92 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=82.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-----------------hH
Q 023910 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFY-----------------LK 184 (275)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~-----------------M~ 184 (275)
+.|..+|+...+.|.+++-.+.+...+++ .-.|.+- +.||-+|++.+++.+-+++..- |-
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 35678899999999999998888777774 4555544 5788999999988777665421 00
Q ss_pred hc-CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH----------HHHHH
Q 023910 185 TE-NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG----------IIRQD 253 (275)
Q Consensus 185 ~~-~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~----------~l~~~ 253 (275)
+. +=+--++..|.-|-.-+++.|++..|..--.. .-+..||.-+-.+|...+.+..|. +=+++
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLee 1284 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEE 1284 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHH
Confidence 00 00112333444444444555555444443222 124567777777777777666553 23455
Q ss_pred HHHHhCCccchHHH
Q 023910 254 AFKYYGDLEFLEED 267 (275)
Q Consensus 254 m~~~~~~~~~~~e~ 267 (275)
+++.|-+-|.++|+
T Consensus 1285 li~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1285 LIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHhcCcHHHH
Confidence 55666666666664
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.98 E-value=4.9 Score=37.56 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
-+.+++.+|.++|.+.-++.--.|. .+.-+-+|++|..+ +.+.-.....+.....|-.|-...|-+|+. -+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHhh
Confidence 3567888888888887664211111 45567788888865 466666666666554444444444443332 4677
Q ss_pred ChhHHHHHHHHHHhC--CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 208 LRDLVVDCYELMKTV--GCE------------PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~--g~~------------pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
..++|.+.+..=++. +-+ +|..-=+..++++...|++.++..+++.+.+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 788888777655432 221 333344677788888888888888888877653
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.88 E-value=5.5 Score=31.79 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=72.3
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCcCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 023910 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQ-GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243 (275)
Q Consensus 165 ~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~ 243 (275)
.-+...|++++|..+|+..-. +.|... -|-.|=-+|-..|++++|+..|.....-.. -|...|-.+-.++...|+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 345688999999999998853 445554 445555555668999999999999876553 466677788888999999
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 023910 244 VAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 244 ~~~A~~l~~~m~~~~~~~ 261 (275)
.+.|.+-|+..+..-+..
T Consensus 119 ~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 119 VCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999988776543
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.75 E-value=6.7 Score=32.50 Aligned_cols=127 Identities=8% Similarity=-0.030 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc--CCCCcCHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE--NSLEPEIQGFNALL 200 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~--~G~~pd~~tyn~lI 200 (275)
+-..|-+++.+.|+..+|...|++-.. .-+--|....-.+-++...-+++-.|..+++.+-+- .+-.||.. -.+-
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~a 167 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFA 167 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHH
Confidence 445788888888888888888888876 234556666666777777778888888888876531 13445543 2344
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
..|...|+..+|..-|+...+. -|+...-.---..+.+.|+.++|..=+.+.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5677788888888888877643 233222222223355677666665444433
No 180
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.70 E-value=3 Score=39.80 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCCChhHHHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFKLRDLVVDC 215 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g~~~~A~~l 215 (275)
+....++|-++-...+.++|.-.++.|=-.|--.|.+++|++-|+.... ++| |..+||-|=..++-..+-++|++-
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 4556678888877667667777778888888889999999999999874 445 568899999999999999999999
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 216 YELMKTVGCEPDR--SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 216 ~~~M~~~g~~pd~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.+-.+ ++|+- +=||.-|. |...|.+++|.+.|=+.+..-.+
T Consensus 487 Y~rALq--LqP~yVR~RyNlgIS-~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 487 YNRALQ--LQPGYVRVRYNLGIS-CMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHh--cCCCeeeeehhhhhh-hhhhhhHHHHHHHHHHHHHhhhc
Confidence 998764 44543 35666665 88999999999988887655443
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.55 E-value=13 Score=36.32 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS-LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
-++..+-+.|+++.|....+.... -.|+.+ .|-+=-+.+.-+|++++|..++++-.+- -.||...=.--.+-..
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Confidence 445555566777777777666644 244432 2222225566667777777777666431 2445544434555555
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVI----------NGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li----------~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
++.+.++|..+.....+.|. +...+-+-+ .+|.|.|++..|..=|.+..+.|.
T Consensus 451 rAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66777777776666665554 322222111 235555666666665555555443
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.50 E-value=1.6 Score=40.67 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 023910 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI----QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS 229 (275)
Q Consensus 154 ~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 229 (275)
..+...|+.+-.+|.+.|++++|+..|++-.. +.||. .+|..+-.+|.+.|+.++|...++...+.+ +.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~-- 144 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL-- 144 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch--
Confidence 34689999999999999999999999999653 56775 469999999999999999999999988752 11
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHH
Q 023910 230 SYRTVIN--GLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 230 ty~~li~--~~~~~g~~~~A~~l~~~m~~~ 257 (275)
-|..+.+ .+....+..+..+++++..+.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 2322221 122233445677777776543
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.46 E-value=8.6 Score=33.17 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=35.7
Q ss_pred HHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTV--GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED 267 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~ 267 (275)
|.+.|.+..|..-+++|.+. .-.-.....-.|..+|-+.|..++|.+.-+-+...||+..+.++.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~ 243 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYKDA 243 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchhhh
Confidence 45566666666666666643 111122233445566666666666666666666666666554443
No 184
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.23 E-value=7 Score=37.00 Aligned_cols=137 Identities=11% Similarity=-0.023 Sum_probs=96.5
Q ss_pred hhcHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-----HHHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCC
Q 023910 118 RLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-----VSLYADMIQVFGT----NGLFQHVEILYFYLKTENS 188 (275)
Q Consensus 118 ~l~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-----~~tyn~Li~~~~~----~g~~~~A~~lf~~M~~~~G 188 (275)
.+.++.+..+++..+=.|+-+.+++.+.+-.+..|+.-. ...|+..+..++- ....+.|.++++.+..+
T Consensus 185 SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 185 SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 355667778999999999999999999987664333322 3556666665554 45678999999999754
Q ss_pred CCcCHHHHHHHHHH-HHhCCChhHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 189 LEPEIQGFNALLKC-LVGFKLRDLVVDCYELMKTVG--CE-PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 189 ~~pd~~tyn~lI~~-~~~~g~~~~A~~l~~~M~~~g--~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
-||...|.-.-.= +...|++++|.+.|+...+.. .+ .....|--+.-.+.-.+++++|.+.|..+.+.
T Consensus 263 -yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 -YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred -CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 5888877655443 345799999999999755311 11 12233333444477789999999999997753
No 185
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=4.8 Score=37.95 Aligned_cols=129 Identities=11% Similarity=-0.026 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~ 204 (275)
-+-..|....+.++..+.|++..+-..- |.-+|-.=-..+.-.+++++|..=|++-.+ +.| ++..|-.+--+..
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHH
Confidence 4445666777888888888887763222 344455544555556678888888887653 333 4567777777777
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.+.+++++..|++-+.. ++--...||..-..+...+++++|.+.++..+++=|.
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 888999999999998743 4445568888888899999999999999988876554
No 186
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.73 E-value=12 Score=36.53 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=77.7
Q ss_pred CCCHHHHHH--HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 023910 154 KPQVSLYAD--MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ-GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSS 230 (275)
Q Consensus 154 ~p~~~tyn~--Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 230 (275)
.|....|+. ++..|-+.|+++.|+...+.-- +..|+.+ .|-+=-..+.++|++++|..++++-.+-. .||...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 566666654 6788899999999999998875 3567654 33344477899999999999999877543 345444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh-CCccchHHH
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKYY-GDLEFLEED 267 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~e~ 267 (275)
-.-=.+-..++++.++|.++.....+.- +.++.+-||
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~m 479 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEM 479 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHh
Confidence 3344455668999999999887755432 444555554
No 187
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.66 E-value=17 Score=35.67 Aligned_cols=133 Identities=7% Similarity=-0.106 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-------------------
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE------------------- 186 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~------------------- 186 (275)
+-+.-.....+++.|..+|.+.+.. .|+...|.-=++.--..++.++|.+++++-.+.
T Consensus 623 aavKle~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH
Confidence 3444455566777777777777663 456666665555555566777777766653221
Q ss_pred -------------CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 187 -------------NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 187 -------------~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+-|+-.+-.|-.|-+.=-+.|.+-+|..+|+.-+-.+ +-|...|-..|..=.|.|..+.|..+..+
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122233444444444456677777888887765332 23667888999999999999999999999
Q ss_pred HHHHhCCcc
Q 023910 254 AFKYYGDLE 262 (275)
Q Consensus 254 m~~~~~~~~ 262 (275)
....+|+-+
T Consensus 779 ALQecp~sg 787 (913)
T KOG0495|consen 779 ALQECPSSG 787 (913)
T ss_pred HHHhCCccc
Confidence 888888754
No 188
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=5.3 Score=38.41 Aligned_cols=122 Identities=12% Similarity=-0.044 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
++++=|+.+.+.|++++|.+.-+..... .+-|...+.+=+=++.+.+++++|+.+.+.=. +..-+.+-+ .=.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~--fEKA 86 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFF--FEKA 86 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhh--HHHH
Confidence 3445566677788888888888888773 34455566666667777888888885543321 111111111 2455
Q ss_pred HH--hCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 203 LV--GFKLRDLVVDCYELMKTVGCEPDRS-SYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 203 ~~--~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
|| +.++.|+|...++ |+.++.. +-..=-+.|.|.|++++|.++++++.+
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55 4778888888777 4444332 444444557788888888888888753
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.25 E-value=0.78 Score=27.86 Aligned_cols=31 Identities=6% Similarity=0.076 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
++..+-..|.+.|++++|.+++++..+..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5677888899999999999999999988886
No 190
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.83 E-value=2.3 Score=42.52 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=72.6
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH--hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV--GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
..+++.+|........++. ||. .|..++.|+. |.|+.++|..+++.....+.. |..|..++-..|-+.|++|+
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4678899999998887653 443 3556666654 689999999999998865555 89999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023910 247 SGIIRQDAFKYYGD 260 (275)
Q Consensus 247 A~~l~~~m~~~~~~ 260 (275)
|..++++....||+
T Consensus 96 ~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 96 AVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHhhCCc
Confidence 99999999999998
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.79 E-value=12 Score=38.19 Aligned_cols=134 Identities=12% Similarity=-0.005 Sum_probs=89.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHc---CC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCC--c-CHHHHH
Q 023910 128 LRELLRQNHCLLALKVFEDIRKE---QW-YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLE--P-EIQGFN 197 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~---~g-~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~--p-d~~tyn 197 (275)
-..+...|++++|...+++.... .| ..+-..+++.+-..+...|++++|...+++... +.|.. | ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 33456689999999999887642 11 111134555666778889999999998887543 11221 1 234455
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTV--GCEP--DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~--g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+-..+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+++....+...
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 5556677789999999998887531 1222 23345556667888999999999999987765543
No 192
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.26 E-value=5.2 Score=30.71 Aligned_cols=86 Identities=6% Similarity=0.001 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
....+|..+.+.+..+....+++.+... | ..+...+|.+|..|++.. ..+..+.+.. .++.+....++..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 3456888888889999999999998765 4 378889999999999874 3455555552 12223333455555
Q ss_pred HhcCCHHHHHHHHHH
Q 023910 239 EAMEEVAFSGIIRQD 253 (275)
Q Consensus 239 ~~~g~~~~A~~l~~~ 253 (275)
.+.+.++++.-++..
T Consensus 80 ~~~~l~~~~~~l~~k 94 (140)
T smart00299 80 EKAKLYEEAVELYKK 94 (140)
T ss_pred HHcCcHHHHHHHHHh
Confidence 555555555555544
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.94 E-value=15 Score=32.05 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=58.6
Q ss_pred hcCCHHHHHHHHHHhHHcC-CCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHHhHh-------cCCCCcCH-----
Q 023910 133 RQNHCLLALKVFEDIRKEQ-WYKPQ------VSLYADMIQVFGTNGLFQHVEILYFYLKT-------ENSLEPEI----- 193 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~-g~~p~------~~tyn~Li~~~~~~g~~~~A~~lf~~M~~-------~~G~~pd~----- 193 (275)
+.|+.+.|..++.+.+... ...|+ .+.||.=.+.+.+..++++|...+++-.+ -....|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666654421 22333 34555555555555344444333332110 00122332
Q ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 194 QGFNALLKCLVGFKLR---DLVVDCYELMK-TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~---~~A~~l~~~M~-~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.+...++.+|...+.. ++|.++++.+. +.|-+|. +|-.=++.+.+.++.+.+.+.+.+|+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4555555566555543 33444555554 3333333 333334444446666666666666665543
No 194
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.79 E-value=31 Score=35.47 Aligned_cols=89 Identities=4% Similarity=0.024 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+++......++.....+.+.|.. +.-+...+-.|-.+|-+.|+.++|..+|+++.+-. .-|....|.+-..|..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHH
Confidence 555555555666555555556655 22345567777788888888888888888887531 4466777777777777
Q ss_pred CCChhHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMK 220 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~ 220 (275)
. ++++|.+++..-.
T Consensus 163 ~-dL~KA~~m~~KAV 176 (906)
T PRK14720 163 E-DKEKAITYLKKAI 176 (906)
T ss_pred h-hHHHHHHHHHHHH
Confidence 7 7888877766554
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=9.8 Score=35.29 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=39.3
Q ss_pred hCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++++|.=-|..-. .+.| +...|.-|+.+|...|++.+|.-+-+..++.+|.
T Consensus 346 ~~~R~~~A~IaFR~Aq--~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQ--MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred hccchHHHHHHHHHHH--hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 3445555555555433 2333 6779999999999999999999988888877775
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.64 E-value=6.9 Score=35.07 Aligned_cols=100 Identities=15% Similarity=0.013 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
..+.+..|.-+...|+...|.++-.+.+ .||-.-|-..|.+|+..++|++-..+-.. .-.| +-|--.++
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP--IGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKSP--IGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC--CChHHHHH
Confidence 4466777888888999999988766552 47999999999999999999988776443 2233 78999999
Q ss_pred HHHhcCCHHHHHHHHHHHH-----HHhCCccchHHH
Q 023910 237 GLEAMEEVAFSGIIRQDAF-----KYYGDLEFLEED 267 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~-----~~~~~~~~~~e~ 267 (275)
.|.+.|...+|..++..+. +.|-+++...|.
T Consensus 246 ~~~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKIPDEERVEMYLKCGDYKEA 281 (319)
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHH
Confidence 9999999999999987732 345455555544
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.24 E-value=5 Score=35.34 Aligned_cols=100 Identities=12% Similarity=0.286 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-HHHHHHHHHHHHhC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-IQGFNALLKCLVGF 206 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-~~tyn~lI~~~~~~ 206 (275)
+-+.+.+++.+|+..|.+..+ +.| |.+-|.-=--+|++.|.++.|++=.+.-.. +-|+ ..+|..|=.+|.-.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 344456677777777777665 233 455555556667777777777665544331 2222 35666777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
|++++|.+-|..-. .+.|+..+|-.=|+
T Consensus 163 gk~~~A~~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 163 GKYEEAIEAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred CcHHHHHHHHHhhh--ccCCCcHHHHHHHH
Confidence 77777777766533 45666666654443
No 198
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.23 E-value=11 Score=30.53 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=66.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc--CCCCcCHHHHH
Q 023910 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTE--NSLEPEIQGFN 197 (275)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~--~G~~pd~~tyn 197 (275)
..+..+-+-|++.|+.+.|++.|.++++. ...|. ...+-.+|....-.|++..+.....+.+.- .|-.++...--
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35568889999999999999999999884 23332 455667788888889998888887776531 12233333222
Q ss_pred HHHHHH--HhCCChhHHHHHHHHHH
Q 023910 198 ALLKCL--VGFKLRDLVVDCYELMK 220 (275)
Q Consensus 198 ~lI~~~--~~~g~~~~A~~l~~~M~ 220 (275)
.+..|+ ...|++.+|-++|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 333332 24678999988887765
No 199
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.01 E-value=23 Score=36.16 Aligned_cols=133 Identities=8% Similarity=-0.082 Sum_probs=79.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHH-----HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC---HHHHHHHHH
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLY-----ADMIQVFGTNGLFQHVEILYFYLKTENSLEPE---IQGFNALLK 201 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty-----n~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd---~~tyn~lI~ 201 (275)
.+...|+.+.|.+.+++...-..-......+ ...+..+...|+.+.|..++...... ..... ...+..+-.
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 4445677777777776664310000000111 11223444567777777776665321 11111 111345666
Q ss_pred HHHhCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccc
Q 023910 202 CLVGFKLRDLVVDCYELMKT----VGCEPDR-SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEF 263 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~----~g~~pd~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 263 (275)
++...|+.++|..++++... .|..++. .+...+-.++.+.|+.++|.+.+.+..+.....++
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 77889999999999988763 3444332 35666777788999999999999999988776554
No 200
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.97 E-value=17 Score=32.02 Aligned_cols=119 Identities=10% Similarity=0.049 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc-CC-CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT-NG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~-~g-~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
..+-+|+++|+...-+..+--|..+-.-|++.... .+ ....-.++.+-+....|-.++..+-.++|..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 44567777777332211245567777777776665 22 33444455555655667889999999999999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 213 VDCYELMKTV-GCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 213 ~~l~~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+++++.-... +..-|...|...|+.....|+..-...+.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999987743 6677889999999999999999877776655
No 201
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.91 E-value=3.8 Score=33.58 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=39.3
Q ss_pred hCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccc
Q 023910 205 GFKLRDLVVDCYELMK-TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEF 263 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~-~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 263 (275)
...+.+......+... -....|+..+|..++.++...|+.++|.++.+++...||..++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 4444444444444433 2345678888888888888888888888888888888884433
No 202
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.74 E-value=1.6 Score=25.30 Aligned_cols=26 Identities=4% Similarity=-0.124 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
+|+.|-+.|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777754
No 203
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.34 E-value=20 Score=31.74 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHH--HHHHHcCCC----HHHHHHHHHHhHhcCCC--CcCHHHHHHHHHHHHhCCC
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADM--IQVFGTNGL----FQHVEILYFYLKTENSL--EPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~L--i~~~~~~g~----~~~A~~lf~~M~~~~G~--~pd~~tyn~lI~~~~~~g~ 208 (275)
+++...+++.|.+. |++-+..+|-+- |.......+ ..+|..+|+.|++...+ .++.+.+.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 45667889999985 899998888773 333322333 46899999999976432 4778899998876 3343
Q ss_pred ----hhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Q 023910 209 ----RDLVVDCYELMKTVGCEPDRS-SYRTVINGLEAMEE---VAFSGIIRQDAFKY 257 (275)
Q Consensus 209 ----~~~A~~l~~~M~~~g~~pd~~-ty~~li~~~~~~g~---~~~A~~l~~~m~~~ 257 (275)
.+++..+|+.+.+.|+..+.. -+.+-|=+++.... ..++.++++.+.+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 466778889999989876443 33444444443332 33556666666554
No 204
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.16 E-value=14 Score=29.78 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=53.5
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-
Q 023910 144 FEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV- 222 (275)
Q Consensus 144 f~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~- 222 (275)
...+.+ .|+.|+...|.-||+.+.+.|++.....++ .+++-||.......+-.+.. ....+.++=-+|...
T Consensus 17 irSl~~-~~i~~~~~L~~lli~lLi~~~~~~~L~qll-----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 17 IRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQLHQLL-----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 344444 467777777777777777777766554444 23466666555555433332 223344443333311
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 223 GCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 223 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
| ..|..+++.+...|++-+|..+.+.
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 1345566666666666666666655
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.15 E-value=11 Score=32.80 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQ---WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-QGFNAL 199 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~---g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~l 199 (275)
|..-++. .+.|++..|...|....+.. -+.||..=| |-..+...|++++|..+|..+.++++-.|-. .+.--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3334443 37899999999999998852 123334333 7899999999999999999998765444444 556666
Q ss_pred HHHHHhCCChhHHHHHHHHHHh
Q 023910 200 LKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~ 221 (275)
-....+.|+.++|..+|++..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6778889999999999999874
No 206
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.85 E-value=1.2 Score=25.75 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 023910 160 YADMIQVFGTNGLFQHVEILYFY 182 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~ 182 (275)
|+.|-+.|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555555555555555
No 207
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=86.66 E-value=4.6 Score=39.70 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-+.+...|-...|..+|+.... |--.|.+|+..|+.++|..+...-.+ -+||...|..+-+....
T Consensus 403 ~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 456667778999999999998755 67788899999999999888776643 37899999999998888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
..-+++|.++++.-... -...++-+ ..+.++++++.+.|+.-.+.+|
T Consensus 470 ~s~yEkawElsn~~sar----A~r~~~~~---~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR----AQRSLALL---ILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred hHHHHHHHHHhhhhhHH----HHHhhccc---cccchhHHHHHHHHHHHhhcCc
Confidence 88899999998875422 00111111 2236777777777777555443
No 208
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.59 E-value=0.94 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=22.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 234 VINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 234 li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+-.++.+.|+.++|.+.|+++++.||+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445667789999999999999999886
No 209
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.57 E-value=6.3 Score=37.69 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=93.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHH-----------HHHHcCCCHHHHHHHHHHhHhcCCCCcCHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI-----------QVFGTNGLFQHVEILYFYLKTENSLEPEIQ 194 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li-----------~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~ 194 (275)
+|--.|...|.-..|++.++...+.+ |- |-.+. +.+.....+.+..++|-++-.+.+-++|..
T Consensus 358 aLAVSytNeg~q~~Al~~L~~Wi~~~---p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 358 ALAVSYTNEGLQNQALKMLDKWIRNK---PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhC---cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 44445666777778888887765521 11 11111 222333445677888888877667556777
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.++.|=-.|.-.|++++|...|+.... ++| |...||-|=-.++...+-++|..-+++..++.|.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 777777778889999999999998763 566 6778999999999999999999999999998774
No 210
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.55 E-value=2.2 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 229 SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 229 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+++.|-..|...|++++|.+++++..+.+-+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 46777777888888888888888877665443
No 211
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.36 E-value=14 Score=29.01 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=72.3
Q ss_pred HhHHcCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC--C--CcCHHHHHHHHHHHHhCCC-hhHHHHHHHH
Q 023910 146 DIRKEQWYKPQV--SLYADMIQVFGTNGLFQHVEILYFYLKTENS--L--EPEIQGFNALLKCLVGFKL-RDLVVDCYEL 218 (275)
Q Consensus 146 ~m~~~~g~~p~~--~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G--~--~pd~~tyn~lI~~~~~~g~-~~~A~~l~~~ 218 (275)
-|+++ +..+++ ...|++++-...-+...-.+.+++.+..-.+ + .-|-.+|++++++.+.... --.+..+|+-
T Consensus 27 y~~~~-~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 27 YMQEE-NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred Hhhhc-ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 34443 555554 5578888888888888888888887742100 0 2344579999999977766 5667889999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 219 MKTVGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 219 M~~~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
|++.+.+++..-|..||.++.+....+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 9988889999999999998887654443
No 212
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.34 E-value=16 Score=32.28 Aligned_cols=88 Identities=11% Similarity=-0.054 Sum_probs=40.6
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFS 247 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A 247 (275)
+.+++++|+..|.+-..- .+-|.+-|..=-.+|++.|..+.|++=.+.-.. +-| -..+|..|=-+|...|++++|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 455555555555554321 122334444444455555555555544333221 112 123455555555555555555
Q ss_pred HHHHHHHHHHhCC
Q 023910 248 GIIRQDAFKYYGD 260 (275)
Q Consensus 248 ~~l~~~m~~~~~~ 260 (275)
.+.|++.++++|.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 5555555555554
No 213
>PLN02789 farnesyltranstransferase
Probab=86.22 E-value=25 Score=31.55 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=32.8
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
+.+..+++.+.+. -.-|..+|+..--.+.+.|++++|++.++++.+. -.-|...|+..-..+.+
T Consensus 125 ~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 125 NKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHh
Confidence 4455555555542 1235556666665666666666666666666532 12344445544444433
No 214
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=25 Score=31.38 Aligned_cols=85 Identities=2% Similarity=-0.169 Sum_probs=42.4
Q ss_pred HHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
+.+.|+.+.|.+-+-.|.-+.....|.+|...+--.= ..|++.+..+=+.-+.+.+-. -..||..++-.||+..-++.
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhH
Confidence 4566777777777777753333445555554432111 123333333333333322111 22366666666666666666
Q ss_pred HHHHHHH
Q 023910 247 SGIIRQD 253 (275)
Q Consensus 247 A~~l~~~ 253 (275)
|-+++.+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 6665554
No 215
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.86 E-value=27 Score=34.31 Aligned_cols=144 Identities=8% Similarity=0.027 Sum_probs=88.4
Q ss_pred hHHHHHHHHhhhcHH---hHHH-HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 023910 108 LDHVFNSKFRRLLKF---DMIA-VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183 (275)
Q Consensus 108 ~~~~~~~~~~~l~~~---~~~~-li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M 183 (275)
...+|++.+.++-.. .... .|.-.-..+-++.+..++....+- +...-+--|..+++.+++++|-+.+...
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 344555555444322 1222 333333456677788888877662 3444677778888888888888877766
Q ss_pred Hhc-----CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-hCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 184 KTE-----NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-TVGCEPDRS--SYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 184 ~~~-----~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
..+ .--+-+-..|+-+-+..+++-+.-.-.++=.-|+ -.+.-||.. .|++|.+-|.+.|.++.|.+++++.+
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 432 1135566677777666666554333222222222 123346654 67899999999999999999999955
Q ss_pred H
Q 023910 256 K 256 (275)
Q Consensus 256 ~ 256 (275)
.
T Consensus 276 ~ 276 (835)
T KOG2047|consen 276 Q 276 (835)
T ss_pred H
Confidence 3
No 216
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.77 E-value=0.28 Score=38.03 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+|+.+.+.+.+.....+++.+... +...+....|.|+..|++.+..++.+++++.. . . .-...++..|-+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~-~-----yd~~~~~~~c~~ 82 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--N-N-----YDLDKALRLCEK 82 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--S-S-----S-CTHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccc--c-c-----cCHHHHHHHHHh
Confidence 5677777777888888888888764 44556777888888888887777777777622 1 1 333456777777
Q ss_pred CCChhHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMK 220 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~ 220 (275)
.|.+++|.-++..+.
T Consensus 83 ~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLG 97 (143)
T ss_dssp TTSHHHHHHHHHCCT
T ss_pred cchHHHHHHHHHHcc
Confidence 787777777777654
No 217
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.59 E-value=3.2 Score=23.21 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 229 SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 229 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+|..+-..|...|++++|.+.+++.++..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777776653
No 218
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=85.21 E-value=14 Score=35.42 Aligned_cols=63 Identities=14% Similarity=-0.063 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 155 p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
.+...|.++--.+...|++++|...|++... ..|+...|..+-..|...|+.++|.+.+++-.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777775556667999999999999874 56899999999999999999999999998865
No 219
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.19 E-value=0.22 Score=38.65 Aligned_cols=83 Identities=10% Similarity=0.026 Sum_probs=50.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 023910 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g 242 (275)
+|+.|-+.+.++....+++.+..+ +-.-+....|.++..|++.+..++..++++... + +-...+++.|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence 455666677777777777777644 344567777777777777777777777766211 1 22245556666666
Q ss_pred CHHHHHHHHHH
Q 023910 243 EVAFSGIIRQD 253 (275)
Q Consensus 243 ~~~~A~~l~~~ 253 (275)
.+++|.-++..
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 66666666655
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.17 E-value=24 Score=30.48 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=83.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHH
Q 023910 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADM 163 (275)
Q Consensus 84 ~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~L 163 (275)
.+... +|..-++.+...... +.+.+...+.++-++-+.++.++|...+++..+.++-.||+- |-.-
T Consensus 47 ~gn~~-~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Y 112 (254)
T COG4105 47 KGNYE-EAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYY 112 (254)
T ss_pred cCCHH-HHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHH
Confidence 34455 777777777655442 123344566788888899999999999999988777666642 4444
Q ss_pred HHHHHc---C----CCHHHHHHHHHHhH---hcCCCCcCHHHHHHHHHHHHhCCChhHHH---HHHHHHHhCCCCCCHHH
Q 023910 164 IQVFGT---N----GLFQHVEILYFYLK---TENSLEPEIQGFNALLKCLVGFKLRDLVV---DCYELMKTVGCEPDRSS 230 (275)
Q Consensus 164 i~~~~~---~----g~~~~A~~lf~~M~---~~~G~~pd~~tyn~lI~~~~~~g~~~~A~---~l~~~M~~~g~~pd~~t 230 (275)
|.|++. - .+...+..-|..|+ .+ -||+ .-..+|. ..+..... | .
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~d~LA-~------~ 169 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLNDALA-G------H 169 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHHHHHH-H------H
Confidence 444442 2 22233333333333 22 1332 1111222 22222211 0 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHH
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEE 266 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e 266 (275)
=-.+-+-|.+.|.+.-|..-+++|++.|++-...+|
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 134566788888888888888888888777554444
No 221
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.16 E-value=7.2 Score=31.71 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHHHhCCChhHHHHHHHHHH---hCCCCCCHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCLVGFKLRDLVVDCYELMK---TVGCEPDRSSY 231 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~---~~g~~pd~~ty 231 (275)
...+..+-+.|++.|+.++|++.|.++... ...|. ...+-.+|....-.|++..+....++.. +.|..++...-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 367888999999999999999999999753 23333 3556778888889999999998887776 34433333322
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHHhCC
Q 023910 232 RTVING--LEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 232 ~~li~~--~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-.+..| +...+++..|-++|-+....|+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 222232 22467899999888887766654
No 222
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.40 E-value=41 Score=33.14 Aligned_cols=139 Identities=10% Similarity=0.041 Sum_probs=91.9
Q ss_pred HHHhcCCCCchHHHHHHHHhhhcHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcC-----CCCCCHHHHHHHHHHHHcCCC
Q 023910 98 LKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ-----WYKPQVSLYADMIQVFGTNGL 172 (275)
Q Consensus 98 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~-----g~~p~~~tyn~Li~~~~~~g~ 172 (275)
..+....+.....+|+..+. +.+......|.-+++.+++++|-+.+.....+. --+.+...|+-+-+..+++-+
T Consensus 147 Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 147 FVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred HHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence 33333333345566665543 444556678888899999999998887664321 125567888888888887755
Q ss_pred HH---HHHHHHHHhHhcCCCCcCH--HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 023910 173 FQ---HVEILYFYLKTENSLEPEI--QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 173 ~~---~A~~lf~~M~~~~G~~pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g 242 (275)
.- ....++..+. +.-||- ..|++|-+-|.+.|.+++|..+|++-...- .+..-|+.+.++|+...
T Consensus 226 ~~~slnvdaiiR~gi---~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 226 KVQSLNVDAIIRGGI---RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFE 295 (835)
T ss_pred hhcccCHHHHHHhhc---ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHH
Confidence 43 3444555543 234554 678999999999999999999998866432 23445667777776543
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.82 E-value=25 Score=32.08 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSL-YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~t-yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
..+..|.+.|+-.-+ .+..-|++. --++-+++.-..++++++-.++.++.- =..-|...|| +-.+++..|...+|.
T Consensus 337 eHlKiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HHHHHHHhcChHHHH
Confidence 457778888877655 355544332 234555666667889999999888753 2334555554 678899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 023910 214 DCYELMKTVGCEPDRSSYR-TVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~~ty~-~li~~~~~~g~~~~A~~l~~~m 254 (275)
++|-......++ |.++|. .|..+|.++++...|++++-.+
T Consensus 414 elf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 414 ELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999877655454 556775 5567889999999999988664
No 224
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.76 E-value=4.9 Score=22.17 Aligned_cols=31 Identities=3% Similarity=-0.098 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|..+-..+.+.|++++|.+.+++..+..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556667788888888888888888877764
No 225
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.97 E-value=34 Score=29.76 Aligned_cols=120 Identities=9% Similarity=0.098 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
.|.+++|.++++...++. +.|.++|--=|-..-..|+.-+|++-+++..+. +.-|...|--+-..|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 588999999999998852 557788876666666667777899888888753 8889999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHH---hcCCHHHHHHHHHHHHHHhC
Q 023910 214 DCYELMKTVGCEPDRS-SYRTVINGLE---AMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~~-ty~~li~~~~---~~g~~~~A~~l~~~m~~~~~ 259 (275)
-.+++|.- +.|-.. -+.-+-+.+. -..+++.|.+++....++-|
T Consensus 175 fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 175 FCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999983 234332 3333333333 34467777788877766655
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.68 E-value=14 Score=35.10 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
.++-+.|+.++|.+.|.+|.+.....-+....-.||++|-..+.+.++..++.+-.+...-+--...|++.+--+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 344456888888888888876432222445666788888888888888888877642211122346677655433
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=21 Score=32.79 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCC----CCC---------CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHH
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQW----YKP---------QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ 194 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g----~~p---------~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~ 194 (275)
=+.|.+.|++..|..-|+...+-.+ ..+ -..+++.|--+|.+.+++.+|++.-+..... -++|+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchh
Confidence 3567778888888888776443211 111 1566777777788888888888877776532 244555
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHHHhCC
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA-MEE-VAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~-~g~-~~~A~~l~~~m~~~~~~ 260 (275)
..--==.+|...|+++.|...|..+.+ +.|+...-+.=|..|.+ ... .+...+++..|....++
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 544445566677788888888887764 45655555444444433 222 33335666666655444
No 228
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.54 E-value=11 Score=27.58 Aligned_cols=44 Identities=7% Similarity=-0.007 Sum_probs=24.8
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 140 A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
+.+-++.+-. ..+.|+....++-+++|-+.+++.-|+++|+-.+
T Consensus 26 ~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444434 3456666666666666666666666666666555
No 229
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.26 E-value=16 Score=26.95 Aligned_cols=32 Identities=28% Similarity=0.188 Sum_probs=15.7
Q ss_pred CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 189 LEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 189 ~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
+.|+.....+.+.||-|.+++..|.++|+-.+
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555555555555555555555555555554
No 230
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.83 E-value=26 Score=27.76 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..++..-...++++++..+++.|+--..-.|...++-..| +.+.|++++|.++|.+...+. ....|..-+.++|
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~----~~~p~~kAL~A~C 87 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA----GAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC----CCchHHHHHHHHH
Confidence 3445555557888899999988876212223344444444 456788999999998887542 1124555666666
Q ss_pred hCCChhHHHHHHH-HHHhCCCCCCH
Q 023910 205 GFKLRDLVVDCYE-LMKTVGCEPDR 228 (275)
Q Consensus 205 ~~g~~~~A~~l~~-~M~~~g~~pd~ 228 (275)
-...-|-..+.+- ++.+.|-.|+.
T Consensus 88 L~al~Dp~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 88 LNAKGDAEWHVHADEVLARDADADA 112 (153)
T ss_pred HHhcCChHHHHHHHHHHHhCCCHhH
Confidence 5544444444432 33344444443
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.55 E-value=7.2 Score=23.43 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
|..+-..|...|++++|+++|++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555554
No 232
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=11 Score=33.83 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
++.+++-+...=.. .|+-||-+|++.||+.+-+.+++.+|..+..+|.
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444444333 4555555555555555555555555555544443
No 233
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.30 E-value=41 Score=29.66 Aligned_cols=101 Identities=7% Similarity=-0.060 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC---CChhHHHHHHHHHHhCCCCC-CHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF---KLRDLVVDCYELMKTVGCEP-DRSSY 231 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~---g~~~~A~~l~~~M~~~g~~p-d~~ty 231 (275)
|...|--|=..|.+.|+.+.|..-|.+-.+-.|- |...+..+-.++... .+-.++..+|+++... .| |..+-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 6788888888899999999998888887643333 334444444443332 2456788888888743 33 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 232 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.-|--.+...|++.+|...++.|.+..|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55666788889999999999988888776
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=79.35 E-value=19 Score=28.96 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
--.+-..|++++|..+|.-+..-... |..=|..|-..|-..+++++|+.+|...-.- + .-|.+.+--+=.+|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhC
Confidence 33444677888888888777552112 2233455555555667778887777654321 0 112222333445667777
Q ss_pred ChhHHHHHHHHHHh
Q 023910 208 LRDLVVDCYELMKT 221 (275)
Q Consensus 208 ~~~~A~~l~~~M~~ 221 (275)
+.+.|...|+.-.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777776655
No 235
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.04 E-value=9.4 Score=28.18 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
+..+-++.+-. ..+.|+.....+-+++|-+.+++.-|+++|+-.+.. +.+....|.-+|.
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 45555666655 468999999999999999999999999999999865 4444336766654
No 236
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.80 E-value=8.5 Score=24.02 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=22.7
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
..+.|.++++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777766666666654
No 237
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.43 E-value=2.4 Score=32.83 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=26.0
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
+-|.-.+|..+|..|.+.|-.|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34666779999999999999999 788887754
No 238
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.52 E-value=39 Score=34.36 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~ 185 (275)
.|...|++|.|++-..-.++ ...|..|-++|.+..+++-|.--+-.|+.
T Consensus 737 fyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 34556889988887776655 35699999999998888877777766654
No 239
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.25 E-value=6.8 Score=22.60 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777655
No 240
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.42 E-value=13 Score=30.32 Aligned_cols=52 Identities=6% Similarity=-0.088 Sum_probs=32.3
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
...+.+......+..++-....|+..+|..++.++...|+.++|.++..++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555544444444443322356777777777777777777777777777765
No 241
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=76.18 E-value=68 Score=29.99 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=80.2
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-----------------------
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYK-PQVSLYADMIQVFGTNGLFQHVEILYFYLKTE----------------------- 186 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~-p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~----------------------- 186 (275)
+...|++++|.-.|..... +. -+..+|--|+..|--.|+..+|.-+-++--+-
T Consensus 344 L~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 4456788888888888765 23 36788888999988888888877544331110
Q ss_pred --------CC--CCcCH-HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 187 --------NS--LEPEI-QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 187 --------~G--~~pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
+| +.|+- ..-+.+-..|...|..+++..+++.-. -..||...-+.|-+.+...+.+.+|.+.|....
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01 23332 223344444556677777777766543 245677777777777777777777777777777
Q ss_pred HHhCC
Q 023910 256 KYYGD 260 (275)
Q Consensus 256 ~~~~~ 260 (275)
..-|+
T Consensus 499 r~dP~ 503 (564)
T KOG1174|consen 499 RQDPK 503 (564)
T ss_pred hcCcc
Confidence 66665
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=75.95 E-value=36 Score=26.65 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 224 (275)
.-++.+.+.|+-++-.++..++.+ .-.|+....-.+-+||.+.|+..++-+++.+--+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444445555555555554432 1234444444455555555555555555554444443
No 243
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.81 E-value=34 Score=28.55 Aligned_cols=79 Identities=5% Similarity=-0.092 Sum_probs=48.1
Q ss_pred HHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCC
Q 023910 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK---TVGCEPDRSSYRTVINGLEAMEE 243 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~---~~g~~pd~~ty~~li~~~~~~g~ 243 (275)
..+.|+ ++|.+.|-.+... +..-|...- .-+..|--..+.++|..++.... ..+-.+|...+.+|.+.+-+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~-~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGT-PELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCC-CCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 444443 5677777777654 344333333 33344444667777777776665 23446677777788888877777
Q ss_pred HHHHH
Q 023910 244 VAFSG 248 (275)
Q Consensus 244 ~~~A~ 248 (275)
++.|+
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77775
No 244
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.74 E-value=27 Score=25.60 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 023910 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT-VGCEPDRSSYRTVING 237 (275)
Q Consensus 172 ~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~ty~~li~~ 237 (275)
+.-++.+-++.+-.. .+.|+...-++.+.||-|.+++..|.++|+-.+. .|- +...|..+++-
T Consensus 22 D~we~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 455666666666653 5899999999999999999999999999998873 332 44567766654
No 245
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.80 E-value=39 Score=28.17 Aligned_cols=75 Identities=9% Similarity=-0.066 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh--cCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT--ENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~--~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
=+.|.+.|-.+... +..-++..--+|-..|. ..+.++|..++..... ..+-.+|...+.+|.+.|-+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 36789999999884 55666666666666666 6689999999987753 2244789999999999999999999886
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=73.77 E-value=74 Score=30.39 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=51.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 023910 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC-EPDRSSYRTVI 235 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li 235 (275)
|-.+.-+.|+.++|++.|.+|.++.-..-+.-....||.+|...+...++..++.+-.+... +--...|+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 34445566999999999999976531112344677899999999999999999998643222 23445677544
No 247
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.60 E-value=45 Score=26.70 Aligned_cols=112 Identities=23% Similarity=0.289 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ---VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~---~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
+.++..-.+.++.+++..+++.++- +.|. ..++-..| +.+.|++.+|+.+|+++..+ .|...--.+|+.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA 85 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER---APGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHH
Confidence 3555566677899999999999977 3554 34444443 45789999999999998643 344333344444
Q ss_pred HHHhCCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023910 202 CLVGFKLRDLVVDCYE-LMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~-~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 248 (275)
+|-...-|..++.+- ++.+.+-.|+. ..|+..+........|.
T Consensus 86 -~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 86 -LCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAH 129 (160)
T ss_pred -HHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchh
Confidence 444333344455443 35555555543 34555555555444443
No 248
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.13 E-value=21 Score=33.92 Aligned_cols=104 Identities=11% Similarity=0.130 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHHHHHHHhCC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-QGFNALLKCLVGFK 207 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~lI~~~~~~g 207 (275)
++.+..|+++.|+.+|-+-..- -.+|.+.|+.=..+|.+.|++++|++==.+-. .+.|+. ..|+-.=.++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcc
Confidence 4556789999999999888663 25588999999999999999998876444433 367776 56777777777778
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
++++|..-|.+=.+. -+-|...++-+.+++
T Consensus 85 ~~~eA~~ay~~GL~~-d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK-DPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhc-CCchHHHHHhHHHhh
Confidence 899998888764322 122445555555555
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.99 E-value=44 Score=26.75 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=42.4
Q ss_pred HHHHHHH---HHcCCCHHHHHHHHHHhHhcCCCCcCH---HHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 023910 160 YADMIQV---FGTNGLFQHVEILYFYLKTENSLEPEI---QGFNALLKCLVGFKLRDLVVDCYELMKTVG 223 (275)
Q Consensus 160 yn~Li~~---~~~~g~~~~A~~lf~~M~~~~G~~pd~---~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g 223 (275)
.+.||+. -.+.++.+++..++.-|.. ..|.. .+|-.+| +.+.|++++|.++|+++.+.+
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC
Confidence 3444443 3456799999999999963 55555 4454444 478999999999999987543
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.80 E-value=52 Score=27.05 Aligned_cols=125 Identities=17% Similarity=0.060 Sum_probs=78.1
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHH-HHHHHHHH--HHhC
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLY-ADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ-GFNALLKC--LVGF 206 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty-n~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~-tyn~lI~~--~~~~ 206 (275)
+.+.++.++|+.-|.++.+ .|+..=.+.- --.-....+.|+...|+.-|+++-... -.|-.. ----|=.+ +..+
T Consensus 68 lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcc
Confidence 4567889999999999988 4554322211 011123567899999999999987653 334332 22223233 3457
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
|.+++.....+-+...|-.--...=..|--+-.++|++.+|...|..+.+.
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 888888877777654433222223345555566889999999999886653
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.49 E-value=87 Score=29.50 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
.+...++|+++.|.++-++. ++...|..|-+...+.|+++-|++-|.+.+ + |..|+-.|.-.|
T Consensus 325 FeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-d---------~~~L~lLy~~~g 387 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK-D---------FSGLLLLYSSTG 387 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT
T ss_pred hHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-C---------ccccHHHHHHhC
Confidence 33444555555555443332 367789999999999999999999998874 2 778888888889
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+.+....+-+.-...| -+|....++.-.|++++..+++.+
T Consensus 388 ~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 388 DREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887777777666665 367777777777888877777766
No 252
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=72.34 E-value=15 Score=27.54 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=62.3
Q ss_pred HHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~ 216 (275)
..|.+.+.+++++.|+.| |+..==++-..+.....++. ..+..+.|.+.|..||. |+.++.+..+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEEeeeeec---------CchHHHHHHH
Confidence 467788888888889999 77666666666655554441 12233446777777775 8888777766
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 023910 217 ELMKTVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 217 ~~M~~~g~~pd~~ty~~li~~~~~~g 242 (275)
=.+.. |...|..++...+.+....|
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 66655 77778888888888877766
No 253
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=72.30 E-value=11 Score=36.93 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHH---------HHHhHhcCCCCcCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhC
Q 023910 154 KPQVSLYADMIQVFGTNGLFQHVEIL---------YFYLKTENSLEPEIQGFNALLKCLVGFKL--RDLVVDCYELMKTV 222 (275)
Q Consensus 154 ~p~~~tyn~Li~~~~~~g~~~~A~~l---------f~~M~~~~G~~pd~~tyn~lI~~~~~~g~--~~~A~~l~~~M~~~ 222 (275)
.|..+.+++=+-.|-..|.+++|..+ |+.+..+ -.+.-.|++.=+||.+..+ +-+...-+++|+++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 44455566666666666766666542 2222111 1244556666677776554 33444556677777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHHhCCccchHHHHHH
Q 023910 223 GCEPDRSSYRTVINGLEAMEEVAFSGIIRQD------AFKYYGDLEFLEEDEED 270 (275)
Q Consensus 223 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~------m~~~~~~~~~~~e~~~~ 270 (275)
|-.||.... .+.|+-.|++.+|-++|.+ ..+.|.+|++++-.+|-
T Consensus 630 ge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~ 680 (1081)
T KOG1538|consen 630 GETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEF 680 (1081)
T ss_pred CCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH
Confidence 777776543 3345556777777777765 55667777666665543
No 254
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.11 E-value=70 Score=28.23 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH--HcCCC-HHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF--GTNGL-FQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~--~~~g~-~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
+..-|=..|...|+.+.|..-|..-.+-.|-+|+. +..+-..+ ...+. ..++..+|+++... -.-|+.+-.-|
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lL 233 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLL 233 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHH
Confidence 34467778889999999999999998854544444 44443333 33333 46899999999742 23455556666
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 200 LKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
=.++...|++.+|...|+.|.+. -|.......+|..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 67789999999999999999864 2333455555554
No 255
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=71.67 E-value=62 Score=27.48 Aligned_cols=115 Identities=8% Similarity=0.083 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc---CHHHH--HHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 023910 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP---EIQGF--NALLKCLVGFKLRDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 153 ~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p---d~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd 227 (275)
+.++..-+|.||=-|.-+..+.+|-+.|.. +.|+.| |..++ -.-|....+.|++++|.+..++..-.=+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 566666677777555555556666666643 346666 33333 3456777889999999999888763333334
Q ss_pred HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHhCCc--cchHHHHHHH
Q 023910 228 RSSY-----RTVINGLEAMEEVAFSGIIRQDAFKYYGDL--EFLEEDEEDI 271 (275)
Q Consensus 228 ~~ty-----~~li~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~e~~~~~ 271 (275)
...| -.+|. +.|.|..++|.++.+.=...+++- ++.+|+|+..
T Consensus 99 ~~l~F~Lq~q~lIE-liR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 99 RELFFHLQQLHLIE-LIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred hhHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 3222 23333 668899999999988865555553 4666666543
No 256
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.46 E-value=26 Score=29.80 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh-cCCCCcCHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT-ENSLEPEIQGFNALLKC 202 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~-~~G~~pd~~tyn~lI~~ 202 (275)
...|+.+.+.+++.+|++...+-.+. -..|.-+=..|+..||-.|++++|..-++-.-. +....+-..+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 35677888999999999999887774 234566667789999999999999876554321 12366777888888875
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=71.22 E-value=48 Score=25.99 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcC---HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 170 NGLFQHVEILYFYLKTENSLEPE---IQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
.|++++|.+.|+.+..+ ++.. ...---|+.+|.+.|++++|...++...
T Consensus 23 ~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred hCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45566666666665543 2211 1333345555556666666666555555
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.20 E-value=69 Score=27.82 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH--hCCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 023910 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK--TVGCEPDRS--SYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 173 ~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~pd~~--ty~~li~~~~~~g~~~~A~ 248 (275)
+++|..+.++|.+ +.-=+..|+--+..|..+|.++.|---++.-- -.++.||.. .|.--+...-..++...|.
T Consensus 74 yEqaamLake~~k---lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 74 YEQAAMLAKELSK---LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4445555555532 12223445555555555555555444444332 123444432 2333333333444444444
Q ss_pred HHHHHHHHHhCCc
Q 023910 249 IIRQDAFKYYGDL 261 (275)
Q Consensus 249 ~l~~~m~~~~~~~ 261 (275)
+++...-..+-.+
T Consensus 151 el~gk~sr~lVrl 163 (308)
T KOG1585|consen 151 ELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhhhHhhhh
Confidence 4444444333333
No 259
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.08 E-value=57 Score=28.82 Aligned_cols=100 Identities=4% Similarity=-0.004 Sum_probs=71.9
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYE 217 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~ 217 (275)
..-.++.+-+....|-.++..+-.++|+.++..++++.-.++++.--...+..-|..-|...|+.-...|+..-+..+.+
T Consensus 183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33445555555544567888889999999999999999999998875433566788999999999999999776666655
Q ss_pred H-----HHhCCCCCCHHHHHHHHHH
Q 023910 218 L-----MKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 218 ~-----M~~~g~~pd~~ty~~li~~ 237 (275)
+ +++.|+..+...-..|-..
T Consensus 263 ~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 263 DGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred CCCeEEeeecCCcCCHHHHHHHHHH
Confidence 3 2345555555544444333
No 260
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.88 E-value=15 Score=20.21 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
+|..+-..|...|++++|.+.|++..+.-|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456667777888888888888888776544
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=70.60 E-value=98 Score=29.30 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-CC------------CCcC
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NS------------LEPE 192 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G------------~~pd 192 (275)
.+|++|.- ...+.......+.++..|-.|-...+-.|. ..+.|++++|.+.|...+.+ .+ .-+|
T Consensus 51 rilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 51 RILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 34555533 345555556666666544333333333332 23556777777777665532 01 1234
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhc
Q 023910 193 IQGFNALLKCLVGFKLRDLVVDCYELMKT----VGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 193 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~pd~~ty~~li~~~~~~ 241 (275)
.+-=+..++++...|++.++..+++.|.. ..+..|..+||-++-.++|.
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 44446677777888888888888887774 33447777887766555553
No 262
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.99 E-value=19 Score=26.68 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
-|+.|+.-|-..|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388899999999999999999988876
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=32 Score=34.22 Aligned_cols=108 Identities=9% Similarity=0.058 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
...|..+..-|+-..|.++-.+.+ -||-..|--=+.+++..+++++-+++=+.++. .+-|---+.+|.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACL 755 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHH
Confidence 356666777788888888777663 35778888888888888888888777766643 334555677888
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+.|+.++|..++..... . .-...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 89999999888775421 1 1567888889988888776544
No 264
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.09 E-value=23 Score=31.61 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=47.4
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTVINGLEAMEEVAFS 247 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A 247 (275)
..+++-.+..+.++...+. +..+-+..--...+.|..+.|.+-|+.-.+- |..| ...||.-+.- .+.|+.+.|
T Consensus 124 se~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasA 197 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASA 197 (459)
T ss_pred ccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHH
Confidence 3455555666666555332 2233333323335677888888877777654 4444 4667766653 356777777
Q ss_pred HHHHHHHHH
Q 023910 248 GIIRQDAFK 256 (275)
Q Consensus 248 ~~l~~~m~~ 256 (275)
.++..+.++
T Consensus 198 Lk~iSEIie 206 (459)
T KOG4340|consen 198 LKHISEIIE 206 (459)
T ss_pred HHHHHHHHH
Confidence 777766553
No 265
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=69.08 E-value=18 Score=29.09 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=57.9
Q ss_pred CcccccCCCCcHHHH-HHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHHHHHHHHHhcCCHHHHH---HHHHHhHHcCCC
Q 023910 78 RKPLQRGRNLSIEAI-QAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLAL---KVFEDIRKEQWY 153 (275)
Q Consensus 78 ~~~l~~~~~l~~ea~-~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~~li~~~~~~g~~~~A~---~lf~~m~~~~g~ 153 (275)
...+.....+++.|+ ++++.|++.|...+....++..++++=.++. +..|.+ ++|. .+..+...+
T Consensus 46 fnqLl~s~kitKtaI~~aLr~mkKsGi~k~EL~~~~~eil~gK~kS~-------La~ctD-~Eal~iDrVI~~vL~~--- 114 (176)
T PF06576_consen 46 FNQLLASKKITKTAINEALRRMKKSGISKPELEAFLREILNGKQKSW-------LAFCTD-DEALFIDRVIGEVLAE--- 114 (176)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhcCCcHHHHHHHHHHhCcccccc-------cceecc-hHHHHHHHHHHHHHHh---
Confidence 557778888888888 8999999999977666677777765433221 223333 3333 222333232
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHH
Q 023910 154 KPQVSLYADMIQVFGTNGLFQHVEI 178 (275)
Q Consensus 154 ~p~~~tyn~Li~~~~~~g~~~~A~~ 178 (275)
+...++.+.+-|+..|....++.
T Consensus 115 --~~gl~~Vl~qrY~~RgkSk~~MA 137 (176)
T PF06576_consen 115 --HPGLINVLRQRYCGRGKSKRKMA 137 (176)
T ss_pred --CcchHHHHHHHHHcccccHHHHH
Confidence 56678999999998887766543
No 266
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.78 E-value=28 Score=33.15 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
.-..+|...|++++|.+=-.+-++ ++|+ .--|+-+-.++.-.|++++|+.-|.+=.+. -+-|-..++.+..++
T Consensus 41 nrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 41 NRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 456666777777766654444433 4555 345555555666666777777777654422 234556666666665
No 267
>PRK15331 chaperone protein SicA; Provisional
Probab=68.59 E-value=36 Score=27.38 Aligned_cols=86 Identities=14% Similarity=-0.040 Sum_probs=59.3
Q ss_pred HHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 023910 167 FGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~ 245 (275)
+...|++++|..+|.-+-. ..| |..=|..|=.+|-..+.+++|...|...-..+. -|...+=-.-.++...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 4468999999999998753 222 333344555555557999999999987663322 12222334456678899999
Q ss_pred HHHHHHHHHHH
Q 023910 246 FSGIIRQDAFK 256 (275)
Q Consensus 246 ~A~~l~~~m~~ 256 (275)
.|...|...++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=67.65 E-value=1e+02 Score=28.36 Aligned_cols=133 Identities=13% Similarity=0.001 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHhHhcCCCCcCHH---HHHHHHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN---------GLFQHVEILYFYLKTENSLEPEIQ---GFNALLK 201 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~---------g~~~~A~~lf~~M~~~~G~~pd~~---tyn~lI~ 201 (275)
.|+-++|.+++...... .-.++.-+|..+-..|-.. ...++|+..|.+-- .+.||.. .+-+|+.
T Consensus 195 ~gdre~Al~il~~~l~~-~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~ 270 (374)
T PF13281_consen 195 PGDREKALQILLPVLES-DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLM 270 (374)
T ss_pred CCCHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHH
Confidence 79999999999995442 3456666776665554322 23577777776543 2345543 3333333
Q ss_pred HHHhCCC-hhHHHHH---HHHHH-hCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHHHHH
Q 023910 202 CLVGFKL-RDLVVDC---YELMK-TVGC---EPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEEDEED 270 (275)
Q Consensus 202 ~~~~~g~-~~~A~~l---~~~M~-~~g~---~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~~~~ 270 (275)
..++.-. -.+..++ +..+. +.|. ..|-.-+.+++.++.-.|+.++|.+..+.|.+..+....++-..+.
T Consensus 271 ~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 271 LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 3332111 1122222 22222 4453 3566677899999999999999999999999887776555544443
No 269
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.48 E-value=90 Score=27.83 Aligned_cols=53 Identities=15% Similarity=-0.016 Sum_probs=28.7
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 165 ~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
..|..+|.+.+|.++-+....- -+.+...|-.++..|...|+--.|..-++.|
T Consensus 287 ~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455556666666665555421 3445555555666666666555555555444
No 270
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.34 E-value=19 Score=23.78 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
|-..-=.+|.||...|++++|.++.+++
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444455555555555555544444
No 271
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.36 E-value=12 Score=33.10 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=37.4
Q ss_pred CCCcCHHH-HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 023910 188 SLEPEIQG-FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235 (275)
Q Consensus 188 G~~pd~~t-yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 235 (275)
.+.||..+ ||.-|..-.+.|++++|+.|++|-++-|+.--..||-.-+
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 35577766 4699999999999999999999999988876666665443
No 272
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.25 E-value=20 Score=26.58 Aligned_cols=27 Identities=4% Similarity=-0.036 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
-|..|+.-|...|++++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999876
No 273
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=65.94 E-value=24 Score=26.18 Aligned_cols=91 Identities=11% Similarity=0.004 Sum_probs=57.8
Q ss_pred HHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~ 216 (275)
+.|...+.+++.+.|+.| |+..==++...+.....+..+ +++.+.|++.|..||. |+.++.+..+
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~-----~~~~d~~~E~~~~T~~---------Ge~~~i~~al 70 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVA-----DIKLDGNVEIDWYTFA---------GEYGDIYLAL 70 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCcc-----ccCCCCCeEEEeeeec---------CchHHHHHHH
Confidence 467788888888888888 766555555555544434322 2222335566666664 7777766655
Q ss_pred HHHH--hCCCCCCHHHHHHHHHHHHhcC
Q 023910 217 ELMK--TVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 217 ~~M~--~~g~~pd~~ty~~li~~~~~~g 242 (275)
=.+. ..|..+|...+...+.+....|
T Consensus 71 Lkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 71 LKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 5544 5677788888877777766555
No 274
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=65.04 E-value=91 Score=27.06 Aligned_cols=130 Identities=9% Similarity=0.002 Sum_probs=69.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHH---cCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCcC--HHHHHH
Q 023910 128 LRELLRQNHCLLALKVFEDIRK---EQWYK-PQVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEPE--IQGFNA 198 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~---~~g~~-p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~pd--~~tyn~ 198 (275)
-+.|-..|++++|.+.|...-+ +.+-. .-...|......|-+. ++++|+..+++-.. +.| .|+ ...+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 3444445666666655554422 11100 0123344444444333 66666655554321 111 122 234555
Q ss_pred HHHHHHhC-CChhHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 199 LLKCLVGF-KLRDLVVDCYELMK----TVGCEPD--RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 199 lI~~~~~~-g~~~~A~~l~~~M~----~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+-..|-.. |++++|.+.|++-. ..| .+. ...+.-+...+.+.|++++|.+++++....+-+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 55566666 88999999888765 334 221 345667788899999999999999998776544
No 275
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.98 E-value=14 Score=18.73 Aligned_cols=30 Identities=7% Similarity=-0.081 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
+|..+-..+...|++++|...++..++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555566666666666666666555443
No 276
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.63 E-value=1.2e+02 Score=28.05 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 193 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
..+++.|--+|.+.+++.+|++..+...+.+ ++|....===-.+|...|+++.|...|+.+++..|.-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 3567777777777777777777777665332 1122211111245666777777777777777777763
No 277
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.55 E-value=1.5e+02 Score=29.04 Aligned_cols=123 Identities=7% Similarity=-0.021 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCHHHHHHHHH--------HhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-CCCcCHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFE--------DIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPEIQGF 196 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~--------~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G~~pd~~ty 196 (275)
..+.-....|+++.|.+++. ...+ .+..|-+|. +++..|.+.++-+-|..++.+-.... .-.+.....
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 55566667899999999999 5555 356666554 57777888887777777777643210 012222333
Q ss_pred HHHH----HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 197 NALL----KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 197 n~lI----~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
++++ .---+.|.-++|..+++++.+. -.+|..+...++.+|++. +.+.|..+-..
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3333 3344689999999999999864 357888999999999876 57777766544
No 278
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=64.49 E-value=33 Score=33.83 Aligned_cols=76 Identities=7% Similarity=-0.017 Sum_probs=39.4
Q ss_pred HHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-----------HHHHHHH
Q 023910 167 FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR-----------SSYRTVI 235 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-----------~ty~~li 235 (275)
+-+...+.-|-++|..|-.. .+++......++|++|+.+-+...+ +.||+ .-|.-.=
T Consensus 757 lk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred HhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHH
Confidence 33445556666666666422 2445556666666666666554332 22222 1233334
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 023910 236 NGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 236 ~~~~~~g~~~~A~~l~~~m 254 (275)
++|-++|+-.+|..+++++
T Consensus 825 kAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHhcchHHHHHHHHHh
Confidence 5556666666666666553
No 279
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=63.78 E-value=62 Score=33.58 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL 179 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~l 179 (275)
.|=.-|+...++..|.+.|+...+- -..|...+-.+.+-|+....++.|..+
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 3444444445666777777776552 122566677777788888888777776
No 280
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=63.65 E-value=92 Score=28.64 Aligned_cols=115 Identities=10% Similarity=-0.062 Sum_probs=68.5
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHH---HHHHHHHcCCCHHHHHHHHHHhHhcCCC-CcCH-HHHHHHHHHHHh---CCCh
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYA---DMIQVFGTNGLFQHVEILYFYLKTENSL-EPEI-QGFNALLKCLVG---FKLR 209 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn---~Li~~~~~~g~~~~A~~lf~~M~~~~G~-~pd~-~tyn~lI~~~~~---~g~~ 209 (275)
++..+.+..|+.+.+ .|++.+-. .|+-.|-...+++.-++|.+.|..-..+ .++. ..=-...-|+.+ .|+.
T Consensus 120 ~~l~~~L~~i~~rLd-~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 120 KELAKELRRIRQRLD-DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHHHhhC-CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 445556666666532 23332222 3333588888999999999999753212 1111 111123345566 8999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 023910 210 DLVVDCYELMKTVGCEPDRSSYRTVINGLEA---------MEEVAFSGIIRQD 253 (275)
Q Consensus 210 ~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~---------~g~~~~A~~l~~~ 253 (275)
++|.+++..+....-.++..||..+-..|-. ...+++|.+.+.+
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 9999999997655666677788777666543 1235556665555
No 281
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=63.54 E-value=87 Score=31.38 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 023910 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232 (275)
Q Consensus 153 ~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 232 (275)
+.-|...|-.|--+....|+++.+.+.|++-.. ++.--...|+.+=..|..+|.-..|..++++-....-.|+..+--
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 556888999999999999999999999998763 466677889999999999999999999998755322235545444
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHHHhCC
Q 023910 233 TVINGLE--AMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 233 ~li~~~~--~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.++...| +.+.++++.++-.+.++.++.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~ 426 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGG 426 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhh
Confidence 4444433 457888888888888876643
No 282
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=63.28 E-value=76 Score=32.98 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKV 143 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~l 143 (275)
+..+-|.+...|+.|..+
T Consensus 531 a~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHhhccccHHHHHHH
Confidence 566677777777777666
No 283
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=62.17 E-value=1.3e+02 Score=27.59 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCC------H----------HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQ------V----------SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE 192 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~------~----------~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd 192 (275)
..+.+.|.++.|..=|+..... .|+ . ......+..+.-+|+...|++....+..- .+-|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wd 188 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWD 188 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--Ccch
Confidence 3466889999999999998773 332 1 11223444566689999999999998742 5678
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 193 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
...|-.=-.+|...|++..|+.=+.....-.- -|..++--+-..+...|+.+.+...+++..++-|+
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 88888888999999999998765444332211 23334445566677889999999999998776443
No 284
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=61.10 E-value=1e+02 Score=31.59 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
.|.+++|..+|.+-++ |-.|=+.|-..|++++|.++-+.=. + +. =..||..--.-+-..++++.|+
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~D-R--iH-Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKD-R--IH-LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcc-c--ee-hhhhHHHHHHHHHhhccHHHHH
Confidence 4778888888888766 3334455666788888888765421 1 21 2234444444444567777777
Q ss_pred HHHHH----------H-HhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 214 DCYEL----------M-KTV--------GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 214 ~l~~~----------M-~~~--------g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++ | +++ .-+-|...|.-.-.-+-..|.+|.|..++....+.|..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 76653 1 111 11234455666666666789999999999988887765
No 285
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=84 Score=31.90 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHH----HHcCCCHHHHHHHHHHhHhcCCCCcCHHHHH
Q 023910 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV----FGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197 (275)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~----~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn 197 (275)
.+.-.-|+.+++...++.|+.+-+.- +. |.-+--.+... +.+.|++++|..-|-+--. -+.|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~----~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s----- 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ----HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS----- 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc----CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----
Confidence 35557888888888888888776553 22 33333334433 4456888988887766432 14443
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 252 (275)
-+|.-|..+.++..-..+++.+.+.|+. +..+-+.|+.+|.+.++.+.-.++.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 2455555566666666667777666664 33344677777777766665555443
No 286
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.67 E-value=38 Score=31.84 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.|+..|.-.|++.+|.+...++.- .+-...+.+-+++-+.-+.|+-...+.++++.-++ ..+|-|.|-.+|.|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhhh
Confidence 678888888888888888887733 23446788888888888888887777777766554 57788888888876
Q ss_pred C
Q 023910 206 F 206 (275)
Q Consensus 206 ~ 206 (275)
.
T Consensus 587 V 587 (645)
T KOG0403|consen 587 V 587 (645)
T ss_pred h
Confidence 4
No 287
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.49 E-value=85 Score=24.69 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHcCCC-HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 156 QVSLYADMIQVFGTNGL-FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~-~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
+..+|++++++.++..- ---+..+|+-|++. +.+++..-|..||+++.+.-..+.-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-DIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCcch
Confidence 56789999999988876 44678899999874 7999999999999999887554443
No 288
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.32 E-value=66 Score=27.46 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHH-cCCCCCCHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRK-EQWYKPQVSLYADMIQV 166 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~-~~g~~p~~~tyn~Li~~ 166 (275)
.++..||-.|+|++|..-++-.-. .....+-..+|..+|.+
T Consensus 40 flfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 566667777777777654444322 00133445566666543
No 289
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.38 E-value=18 Score=23.84 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=33.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
.++.+.++++.++... =|..---.+|.||...|++++|.++++++.+..
T Consensus 5 ~~~~~~~~~~~lR~~R--HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 5 QLEELEELIDSLRAQR--HDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp -HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455566666665221 244555678999999999999999999987544
No 290
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.00 E-value=27 Score=32.84 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
..+++.-+-+.|..+.|+++-..-..+ .+..-+.|+++.|.++-++. .+...|..|=...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHH
Confidence 345555555666666666655444333 23344566666665554332 2556777777777
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
.+.|+++-|.+.|.... -|..|+=-|.-.|+.+.-.++.+.
T Consensus 358 L~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence 77777777777776644 245555556666666655555544
No 291
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=57.74 E-value=84 Score=24.09 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=79.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhC
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWY--KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGF 206 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~--~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~ 206 (275)
.+...|+++.|...|.+.... .- ......+......+...++.++|...+.+.... ... +...+..+-..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 566778888888888877442 11 123444444445566677788888888777632 333 367777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
++.+.|...+.......-. ...++..+...+...+..+.+...+.......+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7788888877776643211 2334444444444666777777777776666553
No 292
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.31 E-value=22 Score=23.81 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=32.8
Q ss_pred CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 023910 189 LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240 (275)
Q Consensus 189 ~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~ 240 (275)
+.|+...+|.|+..+++..-+++++..+++..+.|. .+..+|---+..++|
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 445666777777777777777777777777776664 355566555555555
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.49 E-value=1.8e+02 Score=28.60 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=76.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
.+...+.|+++.|.++-.+.. +..-|-.|-++..+.|++..|.+-|..-+ + |..|+-.+...|
T Consensus 644 Felal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-d---------~~~LlLl~t~~g 706 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR-D---------LGSLLLLYTSSG 706 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-c---------hhhhhhhhhhcC
Confidence 344456788888887766642 56779999999999999999998886653 1 677888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
+-+....+-..-++.|. .|.-.-+|...|++++..+++.+-
T Consensus 707 ~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 707 NAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 87766666666666553 355566677889999988888773
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=55.39 E-value=13 Score=21.14 Aligned_cols=22 Identities=9% Similarity=0.351 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVE 177 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~ 177 (275)
|..+|+.|=..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6888999999999999999885
No 295
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.16 E-value=1.1e+02 Score=25.37 Aligned_cols=19 Identities=0% Similarity=-0.227 Sum_probs=9.5
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~ 220 (275)
.|.+.|.+++|.++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3445555555555555444
No 296
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.85 E-value=24 Score=21.65 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=8.0
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~ 220 (275)
+|...|+.+.|.+++++..
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3444444444444444433
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=54.19 E-value=44 Score=30.43 Aligned_cols=107 Identities=9% Similarity=-0.031 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
.--+.|.+.|++++|+..|..-.. ..| |.++|..--.+|.+...+..|+.=.+.-. ..=..-+.+|+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---------aLd~~Y~KAYS 169 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---------ALDKLYVKAYS 169 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---------HhhHHHHHHHH
Confidence 445788889999999998887644 456 88888888888888888877755443332 11223467777
Q ss_pred hCCChhHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023910 205 GFKLRDLVVDCYELMKT-----VGCEPDRSSYRTVINGLEAMEEVAFS 247 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~-----~g~~pd~~ty~~li~~~~~~g~~~~A 247 (275)
|.|.-..++.-..+-++ -.+.|+. +-|=..+.+...+.++
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~---~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKN---IELKKSLARINSLRER 214 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCccc---HHHHHHHHHhcchHhh
Confidence 77665555555554442 1345662 3344445555444433
No 298
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.62 E-value=41 Score=23.59 Aligned_cols=47 Identities=4% Similarity=-0.079 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHHHHHHHhCCChhHHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEI-QGFNALLKCLVGFKLRDLVVDC 215 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~lI~~~~~~g~~~~A~~l 215 (275)
...+.++|+..|....+..--.|+. .++..|+.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666554321111221 4555566666666666655543
No 299
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.15 E-value=86 Score=31.18 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHc-CCCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHhHhcCCCCcCHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKE-QWYKPQVSLYADMIQVFGTNGLFQ------HVEILYFYLKTENSLEPEIQG 195 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~-~g~~p~~~tyn~Li~~~~~~g~~~------~A~~lf~~M~~~~G~~pd~~t 195 (275)
+..+|+.+|...|++..+.++++..... .|-+--...||.-|+...+.|.++ .|.++++.-. +.-|..|
T Consensus 30 ~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t 105 (1117)
T COG5108 30 GTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLT 105 (1117)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchH
Confidence 4456777777777777777766666441 122222455666666666666542 3333333322 3346666
Q ss_pred HHHHHHHHHh
Q 023910 196 FNALLKCLVG 205 (275)
Q Consensus 196 yn~lI~~~~~ 205 (275)
|..|+.+-..
T Consensus 106 ~all~~~sln 115 (1117)
T COG5108 106 YALLCQASLN 115 (1117)
T ss_pred HHHHHHhhcC
Confidence 6666655433
No 300
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=52.90 E-value=1.4e+02 Score=25.02 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC-CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC---CCCCC
Q 023910 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV---GCEPD 227 (275)
Q Consensus 152 g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G-~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~pd 227 (275)
..-|++.---.|-++....|+..+|...|++-.. | +--|....-.+-++....+++..|..+++++.+. +-.||
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3567887777889999999999999999999864 4 4567777778888888899999999999998865 34566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 228 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+--.+-..|.-.|+..+|+.-|+...+.||.
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 4456667788899999999999999988875
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=52.80 E-value=2e+02 Score=26.88 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFG--TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~--~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~ 211 (275)
.|+-..|.++-.+-.+. +..|....-.|+.+-. -.|++++|.+-|+-|... -+--.--...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555555544331 2334333333333322 235666666666666421 00111111222222234455555
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 212 VVDCYELMKTVGCEPD-RSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
|.++-+.-- +.-|. .....+++...|..|+++.|.++++.
T Consensus 173 Ar~yAe~Aa--~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 173 ARHYAERAA--EKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHHH--hhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 555544432 11221 12344555556666666666655554
No 302
>PRK11906 transcriptional regulator; Provisional
Probab=52.18 E-value=2.1e+02 Score=27.04 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhHHcCCCCCCH------HHHHHHHHHH---Hc-CCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 137 CLLALKVFEDIRKEQWYKPQV------SLYADMIQVF---GT-NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~------~tyn~Li~~~---~~-~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
.+.|..+|.+......+.|+- -+|+.+...+ .. .....+|.++-+.-..- -.-|...-..+=.+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 556777888776333456652 2222222211 11 22334555555544322 123555555555555666
Q ss_pred CChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 207 KLRDLVVDCYELMKTVGCEPD---RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
|+++.|..+|+.-.. +.|| ...|..++..+ +|+.++|.+.+++..++-|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~--~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFH--NEKIEEARICIDKSLQLEP 403 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCc
Confidence 678888888887553 3343 34445554443 7888888888887555444
No 303
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.80 E-value=1.4e+02 Score=24.83 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHhHHcC-CCCCCHHHHHHHHH-HHHcCCCH--HHHHHHHHHhHhcCCCCcCH
Q 023910 133 RQNHCLLALKVFEDIRKEQ-WYKPQVSLYADMIQ-VFGTNGLF--QHVEILYFYLKTENSLEPEI 193 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~-g~~p~~~tyn~Li~-~~~~~g~~--~~A~~lf~~M~~~~G~~pd~ 193 (275)
..|++++|.+-++++.+.- .++--...|+.+.. +|+..+.- -+|.-++...+. |..|..
T Consensus 41 H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~--~~~ps~ 103 (204)
T COG2178 41 HRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD--GRLPSP 103 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc--CCCCCH
Confidence 4566777776666664420 01223445666665 56666543 355556655542 344444
No 304
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.56 E-value=1.9e+02 Score=25.91 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=82.7
Q ss_pred HHHHHHhcC--CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCcCHHHHHHHHH
Q 023910 127 VLRELLRQN--HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEPEIQGFNALLK 201 (275)
Q Consensus 127 li~~~~~~g--~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~pd~~tyn~lI~ 201 (275)
+++.+++.. ++++--+-.++..+..|-.--...|-.+-..||+-++.+.+.+...+..+ ..|.+.|+..--+=+.
T Consensus 83 ~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg 162 (412)
T COG5187 83 RMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLG 162 (412)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 444555532 23333233344434333333467788888999999999999988776432 2477777654333222
Q ss_pred H-HHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 202 C-LVGFKLRDLVVDCYELMKTVGCEPDR----SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 202 ~-~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
- |+...-+++-++..+.|.+.|...+. .+|--+...-. .++.+|-.++.+....|...+
T Consensus 163 ~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~--RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 163 LIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMR--RNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred HhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHH--HhhHHHHHHHHHHhccccccc
Confidence 2 33334567888889999998875543 35655554433 478888888888777666543
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.60 E-value=1.1e+02 Score=22.79 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHH
Q 023910 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDC 215 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l 215 (275)
..++|.-|-+++... |-. ..+.--+=+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHH
Confidence 357788888887663 322 2222222235577789999998887544 6789988877644 577888888877
Q ss_pred HHHHHhCCC
Q 023910 216 YELMKTVGC 224 (275)
Q Consensus 216 ~~~M~~~g~ 224 (275)
+..|..+|-
T Consensus 91 l~rla~sg~ 99 (115)
T TIGR02508 91 LNRLAASGD 99 (115)
T ss_pred HHHHHhCCC
Confidence 777876663
No 306
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.45 E-value=1.1e+02 Score=25.47 Aligned_cols=66 Identities=12% Similarity=-0.018 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..-++++.-|...|+++.|.++|.-+... ++..- ..|..=+..+.+.+.-....+.++.|...|+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~ 108 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFLEWLISFYPS 108 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence 34455555566666666666666655532 22111 12444445555555544444666666666654
No 307
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.38 E-value=1.6e+02 Score=24.84 Aligned_cols=108 Identities=7% Similarity=-0.021 Sum_probs=67.1
Q ss_pred cHHhHHHHHHHHHh--cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHH
Q 023910 120 LKFDMIAVLRELLR--QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197 (275)
Q Consensus 120 ~~~~~~~li~~~~~--~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn 197 (275)
.+..+...+.++.. .+++++|.+.+-.- .+.|+-.. -+|..+...|+.+.|+.++..++- ...+...-+
T Consensus 75 ip~~~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~ 145 (226)
T PF13934_consen 75 IPPKYIKFIQGFWLLDHGDFEEALELLSHP----SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALT 145 (226)
T ss_pred CCHHHHHHHHHHHHhChHhHHHHHHHhCCC----CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHH
Confidence 34467777887776 46677777776332 23344333 377888888999999999987642 222333334
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~ 240 (275)
.++.. ..+|.+.+|+.+-....+.. -...+..++..+..
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 44444 66789999998877655321 13456666666663
No 308
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=49.09 E-value=1.3e+02 Score=23.64 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
+..-++.-++.+.+.|+-|.-.+++.++.. +-.|+....--+-.+|.+.|...++.+++.+.-+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 455567778888899999998899988874 3355666777889999999999999999988653
No 309
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=48.81 E-value=2.3e+02 Score=26.47 Aligned_cols=101 Identities=12% Similarity=-0.063 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHH--HHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG--FNALLKCLVG---FKLRDLVVDCYELMKTVGCEPDRSSY 231 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~t--yn~lI~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty 231 (275)
...+.+++...|..|+++.|++|.+.-+..+-+.+|+.- =..|+.+=.. ..+...|...-.+ ...+.||.+--
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchH
Confidence 455666777777777777777777665543345555532 2233333221 1223333332222 33455665443
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 232 R-TVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 232 ~-~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
. .--.+|.+.|++.++-.+++.+=+..|
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 2 234568888999999888888766544
No 310
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.67 E-value=1.1e+02 Score=22.71 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHH
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF 196 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~ty 196 (275)
..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++..-+..|..+ -.|-..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s--g~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS--GDPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC--CCHHHHHH
Confidence 3445566666666655543 4566666666543 3556556555555555432 34444444
No 311
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=48.54 E-value=1.3e+02 Score=23.58 Aligned_cols=93 Identities=14% Similarity=-0.037 Sum_probs=56.0
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHHHhCC
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCLVGFK 207 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~~~~g 207 (275)
++...|+++.|++.|.+-..- +.-+...||.=-.+|--.|+.++|++=+++-.+-.|-+-- ...|..=-..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455677888888888777663 4456777787777777778887777777665543232211 122222223344456
Q ss_pred ChhHHHHHHHHHHhCCC
Q 023910 208 LRDLVVDCYELMKTVGC 224 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~ 224 (275)
+-+.|..=|+.--+-|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 66666666666555553
No 312
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.52 E-value=64 Score=19.96 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=17.1
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
+.|...++..++++|.. .|+.-+...|+.++.
T Consensus 14 ~~GlI~~~~~~l~~l~~-~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQ-AGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHH-cCcccCHHHHHHHHH
Confidence 34555555566666643 355555555555443
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.42 E-value=51 Score=20.14 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 023910 234 VINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 234 li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
|-.+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 56789999999999999999884
No 314
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=47.64 E-value=3.1e+02 Score=27.68 Aligned_cols=127 Identities=11% Similarity=0.060 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-HHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-IQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-~~tyn~lI~~~~ 204 (275)
-.-+.+.+.+..++|.-.+.+..+. +.-....|.-.=..+-..|..++|.+.|..-.. +.|| +..-+++-..+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHH
Confidence 3445666778888888777777663 344566666666777788999999999987652 4554 456778888888
Q ss_pred hCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 205 GFKLRDLVVD--CYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 205 ~~g~~~~A~~--l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
+.|+..-|.. ++.++.+.+- -|...|--+-..+-+.|+.++|-+.|.-...+-
T Consensus 730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9998777777 8888886652 355677888888999999999999998876553
No 315
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.51 E-value=2.3e+02 Score=25.99 Aligned_cols=116 Identities=8% Similarity=-0.085 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH----HHHHhCCC
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL----KCLVGFKL 208 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI----~~~~~~g~ 208 (275)
-.|+..+|-..++++.+. ++.|..+++--=++|...|+...-...++++.-. -.||...|+-+= -++-..|-
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 346677777777777774 6667777777777777777777777777666522 344543332222 22335677
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 209 ~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+++|...-++-.+-+ +.|...-.++...+--.|++.++.++..+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 777766655433211 12333444555555556666666665554
No 316
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.01 E-value=2.5e+02 Score=26.35 Aligned_cols=113 Identities=10% Similarity=0.006 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHH-------------HHHHHHHHcCCCHHHHHHHHHHhHh--cCCCCcCHHHHHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLY-------------ADMIQVFGTNGLFQHVEILYFYLKT--ENSLEPEIQGFNA 198 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~ty-------------n~Li~~~~~~g~~~~A~~lf~~M~~--~~G~~pd~~tyn~ 198 (275)
.+..+.|...|++-.+ +.|+...- .-=-+-..++|++.+|.+.|.+-.. ...+.|+...|-.
T Consensus 216 ~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred ccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 3567788888887755 35553222 2222346778999999999988653 1246777778888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHH
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA-------MEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~-------~g~~~~A~~l~~~m~~~ 257 (275)
.-....+.|+.++|+.--++-.. .| .+.|.+|.+ .+++++|.+-++...+.
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~----iD----~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALK----ID----SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhh----cC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999988776543 23 223344433 45666666666665443
No 317
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.80 E-value=62 Score=32.34 Aligned_cols=104 Identities=13% Similarity=-0.022 Sum_probs=81.3
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYEL 218 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 218 (275)
.-.++++.+..+.|..-.-.|.+--+.-+..-|+..+|.++-.+.+ .||-.-|--=|.+++..+++++-.++-.+
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 3446666676665655555666777777788899999988876663 57999999999999999999998888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 219 MKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 219 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
++. .+-|.-.+.+|.+.|+.++|..++..
T Consensus 741 kks------PIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 741 KKS------PIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred cCC------CCCchhHHHHHHhcccHHHHhhhhhc
Confidence 763 23566678899999999999988865
No 318
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=46.64 E-value=1.5e+02 Score=23.83 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=38.7
Q ss_pred HHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 178 ~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
+....+.. .|+.|+...|..+|+.+.+.|.+.. +..+...++-||.....+.+-.
T Consensus 15 EYirSl~~-~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs 69 (167)
T PF07035_consen 15 EYIRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLS 69 (167)
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHH
Confidence 33444444 4899999999999999999998554 4445566777776665555433
No 319
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.85 E-value=1.8e+02 Score=24.26 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=12.5
Q ss_pred hcCCHHHHHHHHHHHHHHhCC
Q 023910 240 AMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 240 ~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|+++.|++.++-|.++|-.
T Consensus 133 ~~~~~~~Ae~~~~~ME~lY~~ 153 (204)
T COG2178 133 RKGSFEEAERFLKFMEKLYEE 153 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHH
Confidence 456666666666666655443
No 320
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.13 E-value=21 Score=27.79 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 171 GLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 171 g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
|.-.+|..+|..|... |-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~-G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLER-GNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhC-CCCCc--cHHHHHHH
Confidence 3344556666666543 66665 35555543
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.28 E-value=1.6e+02 Score=23.37 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcC---HHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCC-------------CHHHHH
Q 023910 170 NGLFQHVEILYFYLKTENSLEPE---IQGFNALLKCLVGFKLRDLVVDCYELMKTVG-CEP-------------DRSSYR 232 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~p-------------d~~ty~ 232 (275)
.++.+++..+++.|.. ..|+ ..+|-..| +...|++++|.++|++..+.+ ..| ....|.
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 5666666666666642 3333 34444443 355667777777777666443 222 112344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCCccchHHH
Q 023910 233 TVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLEED 267 (275)
Q Consensus 233 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~ 267 (275)
..-+.....|.-.+|..+.+.+...|--.....|.
T Consensus 98 ~~A~~~le~~~~~~a~~Lv~al~g~~~~~~s~~~~ 132 (153)
T TIGR02561 98 VHADEVLARDADADAVALVRALLGAQQPPASVAEA 132 (153)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHhccccCCcchHHH
Confidence 44444455666666666666665444443333333
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.03 E-value=2e+02 Score=24.36 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCcCH-----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHH---H
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEPEI-----QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR-TVI---N 236 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~pd~-----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~-~li---~ 236 (275)
-+.++|++++|..-|.+-... |+|.. +.|..=-.++.+.+.++.|+.-...-.+-+ | ||+ +|. .
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--p---ty~kAl~RRAe 176 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--P---TYEKALERRAE 176 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--c---hhHHHHHHHHH
Confidence 355677888887777776532 44432 445555556667777777766555443322 2 343 332 2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+|-+..++++|.+=+..+.+..|+.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcch
Confidence 4666677777777777777766653
No 323
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.84 E-value=54 Score=22.21 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=24.8
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g 242 (275)
-.|+.+.+.+++++..+.|+.|.......+..+.-+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35677777777777776677777666666666655443
No 324
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=2.8e+02 Score=26.06 Aligned_cols=121 Identities=12% Similarity=-0.079 Sum_probs=84.0
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH------
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF--GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK------ 201 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~--~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~------ 201 (275)
++.-.|+.++|..+--...+.. .+..+...+++. -..++.+.|..-|++-.. .-||-..--++-.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3444688888888877776632 344556666553 345778888888877542 3455433322222
Q ss_pred -------HHHhCCChhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 202 -------CLVGFKLRDLVVDCYELMK---TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 202 -------~~~~~g~~~~A~~l~~~M~---~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
-..+.|.+.+|.++|.+-. -..++|+...|.-.-....+.|++++|..--++..++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 2357899999999999877 3467788888888888899999999998877775554
No 325
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.39 E-value=1.7e+02 Score=26.43 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=47.1
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 126 AVLRELLRQNH---CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 126 ~li~~~~~~g~---~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
.+++.+.+.++ +-.|.-+++...++... |...=--||..|..-|-...|..+|..+.-+ .+.-|+..|..+
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~--n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK-~IQ~DTL~h~~~ 258 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKSPH--NYQLKLLLVRLYSLLGAGSLALEHYESLDIK-NIQLDTLGHLIL 258 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHhcChH-HHHHHHhHHHHH
Confidence 55555555554 44677777777665322 3333334778899999999999999998754 477777666543
No 326
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.32 E-value=2.5e+02 Score=24.99 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
.....|+..+|..+|+...... .-+.-.--.|..+|...|+++.|..++..+..+. -....+...+=|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 4445677777777777765531 1223334456667777777777777777765431 111222222233344444444
Q ss_pred hHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 210 DLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 210 ~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
.+...+-...-. .| |...--.+-..+.-.|+.+.|.+.+-.
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333333322 23 333333445555556666666555444
No 327
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.13 E-value=2.7e+02 Score=25.31 Aligned_cols=135 Identities=9% Similarity=-0.016 Sum_probs=82.9
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCcCHHHHHHHH
Q 023910 126 AVLRELLRQN--HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEPEIQGFNALL 200 (275)
Q Consensus 126 ~li~~~~~~g--~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~pd~~tyn~lI 200 (275)
.+++.+++.. ++++--+..+...+..|-.--...+-..-..||+-|+-+.|++.+..-.. ..|.+.|++-+..=+
T Consensus 71 ~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRl 150 (393)
T KOG0687|consen 71 DLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRL 150 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 4455555543 23333333333333222111234566677889999999999998876542 248899998877666
Q ss_pred HHHHh-CCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 201 KCLVG-FKLRDLVVDCYELMKTVGCEPDR----SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 201 ~~~~~-~g~~~~A~~l~~~M~~~g~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
.-+.- ..-+.+-.+-.+.|.+.|...+. .+|..|-..- ..++.+|-.+|-+....|..-+
T Consensus 151 glfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms--vR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 151 GLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS--VRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred HHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH--HHhHHHHHHHHHHHccccccee
Confidence 55433 33445555566666677775543 3666665544 3489999999998777766543
No 328
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.88 E-value=3.8e+02 Score=27.00 Aligned_cols=87 Identities=8% Similarity=-0.024 Sum_probs=55.2
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-CC-CC----------cCHHHHHHHHHHHHhC
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NS-LE----------PEIQGFNALLKCLVGF 206 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G-~~----------pd~~tyn~lI~~~~~~ 206 (275)
+..+.+....++.|+.-+......|++.. .|++..|+.++++.... .| +. .+......|+.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Confidence 33444444434346776776666666544 48888888888765421 01 11 233445566666665
Q ss_pred CChhHHHHHHHHHHhCCCCCCH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDR 228 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~ 228 (275)
++...++.++++|.+.|+.+..
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHHH
Confidence 8899999999999999887653
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.83 E-value=90 Score=19.87 Aligned_cols=26 Identities=12% Similarity=-0.073 Sum_probs=18.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 236 NGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 236 ~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
-|+.+.|++++|.+..+.+.+.-|.-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 35677788888888888777777764
No 330
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.61 E-value=1.2e+02 Score=27.67 Aligned_cols=87 Identities=9% Similarity=-0.093 Sum_probs=66.6
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT---VGCEPDRSSYRTVINGLEAMEEVA 245 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~ty~~li~~~~~~g~~~ 245 (275)
-.|+..+|-..++++.++ ++-|...++-.=++|.-.|+.+.-...++.... .+++--.+.-...--++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457788888889998854 788999999999999999999999999998872 233333333344555677899999
Q ss_pred HHHHHHHHHHHH
Q 023910 246 FSGIIRQDAFKY 257 (275)
Q Consensus 246 ~A~~l~~~m~~~ 257 (275)
+|++.-++..++
T Consensus 193 dAEk~A~ralqi 204 (491)
T KOG2610|consen 193 DAEKQADRALQI 204 (491)
T ss_pred hHHHHHHhhccC
Confidence 999988875543
No 331
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.86 E-value=1.9e+02 Score=23.20 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=43.6
Q ss_pred hHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 147 IRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 147 m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
+++ .|+.++..=- +++..+...+..=.|.++++.++++ |..++..|---.|+.+...|.+.+.
T Consensus 17 L~~-~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 17 CAQ-RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHH-cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEEE
Confidence 344 4777776543 4555555556666888999999865 6777888877777888888876543
No 332
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.14 E-value=59 Score=28.87 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=35.9
Q ss_pred CCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 153 YKPQVSL-YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 153 ~~p~~~t-yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
+.||..+ ||.-|..-.+.|++++|+.|++|-+.- |+.--..||-.-|+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~L-G~~~Ar~tFik~V~ 300 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERL-GSTSARSTFISSVK 300 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCchHHHHHHHHhh
Confidence 4455544 579999999999999999999999864 77666666654443
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.13 E-value=98 Score=21.70 Aligned_cols=47 Identities=4% Similarity=-0.168 Sum_probs=34.6
Q ss_pred hCCChhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEP-D-RSSYRTVINGLEAMEEVAFSGIIR 251 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~p-d-~~ty~~li~~~~~~g~~~~A~~l~ 251 (275)
...+-++|+..+....+.-..| + ..+...|+.+|+..|++.++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999888877543333 3 247789999999999998776553
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.86 E-value=2.1e+02 Score=24.72 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.4
Q ss_pred HHHcCCCHHHHHHHHHHh
Q 023910 166 VFGTNGLFQHVEILYFYL 183 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M 183 (275)
.++-.+++++|-++|.+-
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 455566899999998764
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.34 E-value=3.7e+02 Score=26.09 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTE 186 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~ 186 (275)
+...++..|.+.+++++|..++..|.=. -.+. -.+.+.+.+.+.+...-.+.+..++.....
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~--~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWN--TMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCcc--ccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3458899999999999999999999321 1111 244556677788877667777777776543
No 336
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.21 E-value=1.7e+02 Score=29.23 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhc-CCCCcCHHHHHHHHHHHHhCCChh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFKLRD------LVVDCYELMKTVGCEPDRSSYRTV 234 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~~-~G~~pd~~tyn~lI~~~~~~g~~~------~A~~l~~~M~~~g~~pd~~ty~~l 234 (275)
+|+.+|..+|++..+..+++..-.. .|-+-=...||.-|+...+.|.++ .|.++++.-. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788888888888888887776532 234444556777777777777643 3444444433 55577788777
Q ss_pred HHHHHh
Q 023910 235 INGLEA 240 (275)
Q Consensus 235 i~~~~~ 240 (275)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 337
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=39.11 E-value=3e+02 Score=28.32 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=51.0
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC---CCC----------cCHHHHHHHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN---SLE----------PEIQGFNALLKCLV 204 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~---G~~----------pd~~tyn~lI~~~~ 204 (275)
+...+++.+..++.|+..+......++... .|++..++.+++++..-. ++. .+......+|++..
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~ 259 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA 259 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 333444444433346666666666555544 377888888777764210 111 11222334555555
Q ss_pred hCCChhHHHHHHHHHHhCCCCCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd 227 (275)
.|+...++.+++++.+.|..|-
T Consensus 260 -~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 260 -AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 5778889999999988888654
No 338
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.88 E-value=95 Score=22.72 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhH
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~ 211 (275)
.+++.+...+..-.|.++++.++++ |..++..|---.|+.+...|.+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3556666666666788888888765 667777777777777777776654
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.78 E-value=1.4e+02 Score=21.09 Aligned_cols=54 Identities=6% Similarity=-0.066 Sum_probs=28.9
Q ss_pred HhCCChhHHHHHHHHHH----hCCCCCC--HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMK----TVGCEPD--RSSYR--TVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~----~~g~~pd--~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
.+.|++.+|.+-+.... ..+.... ...|. .+.......|..++|.+.+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666644443333 3332221 12222 2334456678888888888886654
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.67 E-value=2.9e+02 Score=24.77 Aligned_cols=69 Identities=12% Similarity=-0.060 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCCCCcCHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT----ENSLEPEIQGF 196 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G~~pd~~ty 196 (275)
.+-..|..+|.+.+|.++-+....- -+.+...|-.|+..|...|+--.|.+-++.|.. +.|+..|...+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4567788899999999999988773 245788899999999999998778777777643 35666665444
No 341
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=38.49 E-value=1.8e+02 Score=22.17 Aligned_cols=132 Identities=12% Similarity=-0.071 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHhHhcCCC--CcCHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQ-VFGTNGLFQHVEILYFYLKTENSL--EPEIQGFNALLKC 202 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~-~~~~~g~~~~A~~lf~~M~~~~G~--~pd~~tyn~lI~~ 202 (275)
.....+...+....+.+.+...... ...+ .......-. .+...|+++.|...|++... ..- ......+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 100 NLGLLLEALGKYEEALELLEKALAL-DPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcC-CCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhH
Confidence 3334444455566666666666552 1111 122222222 56677777777777776632 111 1233444444444
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+...++.+.|...+.......-..+...+..+-..+...+.++.|...+.......+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 5566777777777776664322213556666666677777777777777776666654
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.71 E-value=2.9e+02 Score=24.47 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHh-cCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 023910 161 ADMIQVFGTNGLFQHVEILYFYLKT-ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLE 239 (275)
Q Consensus 161 n~Li~~~~~~g~~~~A~~lf~~M~~-~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~ 239 (275)
..=|.+++..|++.++....-+--. -..++|.+. --.|-.|+|.|.+..+.++-..=....-.-+...|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3346777777788777654332221 112555543 3445557788888877777665553221222223666655554
Q ss_pred -----hcCCHHHHHHHHH
Q 023910 240 -----AMEEVAFSGIIRQ 252 (275)
Q Consensus 240 -----~~g~~~~A~~l~~ 252 (275)
=.|.+++|+++..
T Consensus 165 l~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHhccccHHHHHHHHh
Confidence 4588888888773
No 343
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.71 E-value=64 Score=16.87 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMI 164 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li 164 (275)
|+.+.|..+|+.+.+. +.-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~--~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK--FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH--CCCChHHHHHHH
Confidence 3456666677766664 233455555444
No 344
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.43 E-value=2.8e+02 Score=24.14 Aligned_cols=119 Identities=15% Similarity=0.072 Sum_probs=77.2
Q ss_pred HHHHHHhcCC---HHHHHHHHHHhHHcCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 127 VLRELLRQNH---CLLALKVFEDIRKEQWY---KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 127 li~~~~~~g~---~~~A~~lf~~m~~~~g~---~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
++...| |+ ...|.+.|+.......- ..+.-.-.+++....+.|..++-..+++..+.. ++...-+.++
T Consensus 135 ~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l 208 (324)
T PF11838_consen 135 LLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLL 208 (324)
T ss_dssp HHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHH
T ss_pred HHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHH
Confidence 355555 44 56788999988773111 345666677788888888877766677666543 3788889999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGLEAMEEV--AFSGIIRQD 253 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~li~~~~~~g~~--~~A~~l~~~ 253 (275)
.+++...+.+...++++.....+ +++.. . ..++.++...+.. +.+.+.+.+
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 99999999999999999988754 65554 3 4455556544444 777777665
No 345
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=37.25 E-value=28 Score=23.14 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHhHhcCCCCc
Q 023910 172 LFQHVEILYFYLKTENSLEP 191 (275)
Q Consensus 172 ~~~~A~~lf~~M~~~~G~~p 191 (275)
+++.|...|.+++.+..++|
T Consensus 40 d~~~Al~~F~~lk~~~~IP~ 59 (63)
T smart00804 40 DYERALKNFTELKSEGSIPP 59 (63)
T ss_pred CHHHHHHHHHHHHhcCCCCh
Confidence 45555555555554323333
No 346
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=37.09 E-value=78 Score=22.66 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=7.2
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 023910 160 YADMIQVFGTNGLFQHVE 177 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~ 177 (275)
...|+.++-.++.-.-|+
T Consensus 68 v~~Lv~AL~~c~l~~lAe 85 (90)
T cd08780 68 LQRLVQALEENGLTSLAE 85 (90)
T ss_pred HHHHHHHHHHccchHHHH
Confidence 333444444444333333
No 347
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.87 E-value=59 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHc
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKE 150 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~ 150 (275)
++++-+.+|.--++|+++.+.|.++
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKr 60 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKR 60 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 5666667777777777777777775
No 348
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.82 E-value=3.8e+02 Score=25.49 Aligned_cols=102 Identities=7% Similarity=-0.055 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-------------CCCcCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023910 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-------------SLEPEIQGFNALLKCLVGFKLRDLVVDCYEL 218 (275)
Q Consensus 152 g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-------------G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 218 (275)
|+.-+......|+.. ..|++..|+..++.+..-. |..++ .....++++. +.++++.|..++++
T Consensus 193 gi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~-~~i~~li~si-~~~d~~~Al~~l~~ 268 (472)
T PRK14962 193 GIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPI-EVVRDYINAI-FNGDVKRVFTVLDD 268 (472)
T ss_pred CCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCH-HHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 454454444444442 2356666666665543210 12222 2334444443 56899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHH
Q 023910 219 MKTVGCEPDRSSYRTVINGLEAMEEV--AFSGIIRQDAFKY 257 (275)
Q Consensus 219 M~~~g~~pd~~ty~~li~~~~~~g~~--~~A~~l~~~m~~~ 257 (275)
|...|..|....-..+..++-.-|.- ..|..+...+.+.
T Consensus 269 ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~ 309 (472)
T PRK14962 269 VYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNI 309 (472)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 99999888877655555555444432 2344444443333
No 349
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.47 E-value=1.4e+02 Score=21.53 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 023910 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223 (275)
Q Consensus 173 ~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g 223 (275)
.++..+++...+...| ...|+++|+.++-+.|.-..|..+-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~~G---~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTG---RKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 5555555555554333 24456667777766666666666666555554
No 350
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=36.07 E-value=2.1e+02 Score=22.44 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHH---HHHHhc
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT-VGCEPDRSSYRTVI---NGLEAM 241 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~ty~~li---~~~~~~ 241 (275)
+.+..|+++.|++.|.+-..- ++-+...||.=-.+|--.|+.++|++=+++-.+ .|-+ ......+.+ ..|-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 567889999999999987642 556788999999999999999999998888774 3333 333333322 236678
Q ss_pred CCHHHHHHHHHHHHH
Q 023910 242 EEVAFSGIIRQDAFK 256 (275)
Q Consensus 242 g~~~~A~~l~~~m~~ 256 (275)
|+.|.|..=|+..-+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 999999888877543
No 351
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.92 E-value=1.9e+02 Score=21.85 Aligned_cols=43 Identities=14% Similarity=0.000 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 211 LVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
++.++|..|.+.|+-- -..-|...-..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888776643 445667777778888888888888865
No 352
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=35.86 E-value=1.1e+02 Score=28.03 Aligned_cols=51 Identities=10% Similarity=-0.065 Sum_probs=32.6
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
-|.+.|.+++|++.|..-. .+.| |.++|..=-.+|.+..++..|..=.+.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 4667777777777776532 1445 7777777777777777666555544433
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.49 E-value=4.1e+02 Score=25.65 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHhcCCHHHH-HHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 128 LRELLRQNHCLLA-LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 128 i~~~~~~g~~~~A-~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
|.--...|++..| .++|+-++.. .-.|+.+..-+.| +...|+++.+..++....+- +-....|-.+++...-+.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhch
Confidence 3333355776654 5778888774 4567766555544 34568999999999887542 566778899999999999
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 207 KLRDLVVDCYELMKTVGCE-PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
|++++|+.+-+.|....++ |...+.. .-.--..|-+|++.-.++.....
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~ia--a~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVA--AGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeee--cccHHHHhHHHHHHHHHHHHhcc
Confidence 9999999999999866665 3333322 12223457788888888876644
No 354
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.33 E-value=1.3e+02 Score=25.59 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHh----cCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKT----ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~----~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
-|-.-|.+.|++++|.++|+.+.. +.-..+...+...+..++.+.|+.++.+.+-=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444556666666666666665532 2123455555666666666666666665554443
No 355
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.11 E-value=5.2e+02 Score=26.59 Aligned_cols=113 Identities=7% Similarity=-0.038 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCC-cCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE-PEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~-pd~~tyn~lI~~~~ 204 (275)
.+|.-|....++..-..+++.+.+. |+. +...-+.||++|.+.++.+.-.++.+.-. + |.. .| .-+.+..|-
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr 474 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILR 474 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHH
Confidence 6777777777777777777777774 543 44455778899999998888877776654 2 332 13 445666777
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+.+-.++|..+-..-.. +......+++ ..+++++|.++++.
T Consensus 475 ~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred HhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 77777777766554321 3334455554 46788888888776
No 356
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.07 E-value=4.6e+02 Score=25.96 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-C-C----------CcCHHHHHHHHHHHHhCCC
Q 023910 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-S-L----------EPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 141 ~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G-~----------~pd~~tyn~lI~~~~~~g~ 208 (275)
.+.+....++.|+..+......|+.. ..|++..|+.++++..... | + .++......++.++.. |+
T Consensus 189 ~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d 265 (618)
T PRK14951 189 LEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GD 265 (618)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CC
Confidence 33443332324777777777777663 3588888888887543210 1 1 1334455566666665 78
Q ss_pred hhHHHHHHHHHHhCCCCCCHH
Q 023910 209 RDLVVDCYELMKTVGCEPDRS 229 (275)
Q Consensus 209 ~~~A~~l~~~M~~~g~~pd~~ 229 (275)
...++.++++|.+.|..|...
T Consensus 266 ~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 266 GRTVVETADELRLNGLSAAST 286 (618)
T ss_pred HHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999988877643
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.87 E-value=2.2e+02 Score=22.14 Aligned_cols=58 Identities=9% Similarity=0.000 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
+..+-++..-. ..+.|+....-+-+.++-+.+++--|.++|+-++.. +.+--..|-.+
T Consensus 67 EvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHH
Confidence 33444555545 467888888888888888888888888888888743 44433334433
No 358
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.45 E-value=1.4e+02 Score=20.61 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHH
Q 023910 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDC 215 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l 215 (275)
+.+.|..++..++.. -+-+...||++-..+.+++- .+ . .+.||..+. |.+..|.+-
T Consensus 12 DtEmA~~mL~DLr~d--ekRsPQLYnAI~k~L~RHkF---------~i--s-kl~pd~~~L----------G~L~~aL~e 67 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD--EKRSPQLYNAIGKLLDRHKF---------QI--S-KLQPDENIL----------GELAAALEE 67 (82)
T ss_pred HHHHHHHHHHHhcch--hhcChHHHHHHHHHHHHccc---------hh--h-hcCccHHHH----------HHHHHHHHH
Confidence 456778888888663 46688999999998888752 11 1 266666544 334455666
Q ss_pred HHHHH
Q 023910 216 YELMK 220 (275)
Q Consensus 216 ~~~M~ 220 (275)
|++|.
T Consensus 68 y~~~~ 72 (82)
T PF11123_consen 68 YKKMV 72 (82)
T ss_pred HHHHc
Confidence 66655
No 359
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=3.6e+02 Score=24.58 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=8.2
Q ss_pred HHcCCCHHHHHHHHHHhH
Q 023910 167 FGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M~ 184 (275)
+-..|+.+++.+++++.+
T Consensus 125 ~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 125 KLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 333444444444444443
No 360
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.33 E-value=2.7e+02 Score=23.06 Aligned_cols=70 Identities=9% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc
Q 023910 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT 169 (275)
Q Consensus 90 ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~ 169 (275)
.|+.+++.+.+....+.........++ + ...+-.|.+.|.+++|.+++++.-+. |+....-.-+-...+
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~li----k---~~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~ 155 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLI----K---EQAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHH----H---HHHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHH
Confidence 577777777766552212222222222 1 25566788899999999999988653 344444433333333
Q ss_pred C
Q 023910 170 N 170 (275)
Q Consensus 170 ~ 170 (275)
.
T Consensus 156 ~ 156 (200)
T cd00280 156 E 156 (200)
T ss_pred c
Confidence 3
No 361
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.30 E-value=3e+02 Score=24.85 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCCHH---HHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 023910 158 SLYADMIQVFGTNGLFQ---HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~---~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 234 (275)
.+-.+|++.|.+.++.. +|.-+++..... -+-|...=--+|..|...|-.+.|..+|+.+.=+.+.-|...|..+
T Consensus 181 la~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~--s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~ 258 (365)
T PF09797_consen 181 LAAHSLLDLYSKTKDSEYLLQAIALLEHALKK--SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLIL 258 (365)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHH
Confidence 45667788787777664 677777776543 2334444455778899999999999999988755666665544432
Q ss_pred HHHHHhcCCHHHHH-HHHHHHHHH
Q 023910 235 INGLEAMEEVAFSG-IIRQDAFKY 257 (275)
Q Consensus 235 i~~~~~~g~~~~A~-~l~~~m~~~ 257 (275)
+-+...|....+. ++++...+.
T Consensus 259 -~r~~~~~~~~~~~~~~~~~~~~f 281 (365)
T PF09797_consen 259 -DRLSTLGPFKSAPENLLENALKF 281 (365)
T ss_pred -HHHhccCcccccchHHHHHHHHH
Confidence 2233344444433 444444333
No 362
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.65 E-value=4.5e+02 Score=25.19 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC-CC----------cCHHHHHHHHHHHHhC
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-LE----------PEIQGFNALLKCLVGF 206 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G-~~----------pd~~tyn~lI~~~~~~ 206 (275)
++..+.+....++.|+..+......++... .|++..|+.+++.+....+ +. +.....-.|++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 334444444333347766666666665543 4788888877777543211 11 2223355566666 56
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRS 229 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ 229 (275)
++.++|+.++++|...|..|...
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999999777643
No 363
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.26 E-value=5.4e+02 Score=25.95 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=58.8
Q ss_pred HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHHh
Q 023910 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG---CE----------PDRSSYRTVINGLEA 240 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~----------pd~~ty~~li~~~~~ 240 (275)
++....+....+..|+..+......++... .|++..|..++++....| +. ++......|++++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 444455544443347888877777777655 589999999998766433 11 344456667776655
Q ss_pred cCCHHHHHHHHHHHHHHhCCc-cchHHH
Q 023910 241 MEEVAFSGIIRQDAFKYYGDL-EFLEED 267 (275)
Q Consensus 241 ~g~~~~A~~l~~~m~~~~~~~-~~~~e~ 267 (275)
++...+.++++++.+.-.+. .++.++
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~~l~~L 285 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDNALGEL 285 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88999999999987554433 344443
No 364
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.22 E-value=1e+02 Score=22.42 Aligned_cols=21 Identities=10% Similarity=0.013 Sum_probs=9.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHh
Q 023910 163 MIQVFGTNGLFQHVEILYFYL 183 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M 183 (275)
+|..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444444555554444444
No 365
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.32 E-value=4.8e+02 Score=25.08 Aligned_cols=89 Identities=7% Similarity=0.046 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC-----C----------CcCHHHHHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-----L----------EPEIQGFNALLKC 202 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G-----~----------~pd~~tyn~lI~~ 202 (275)
++..+.+....++.|+..+......++.. ..|++.+|+.+++....-.+ + .++....-.|+++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 34444444443434676676666666553 35788888888877632111 1 2333444455555
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRS 229 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ 229 (275)
.. .|+..+|+.+++++...|..|...
T Consensus 268 i~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 268 II-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 55 489999999999999999988754
No 366
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=31.27 E-value=1.2e+02 Score=21.79 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHH
Q 023910 164 IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216 (275)
Q Consensus 164 i~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~ 216 (275)
-.-|-+.|..++|.+++...+...|-. .|...|+.|+-.++.-.-|..++
T Consensus 39 ~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 39 AYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 335556666666666666555433332 55556666666655555554443
No 367
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.25 E-value=3.7e+02 Score=23.78 Aligned_cols=98 Identities=9% Similarity=-0.075 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
...-+++++.+--.|.+.-.+.++++..+. .-+-+.+.-..|...-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 345678888888889999999999998864 3566777778888888889999999999998886666667777766654
Q ss_pred H-----HHhcCCHHHHHHHHHHHH
Q 023910 237 G-----LEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 237 ~-----~~~~g~~~~A~~l~~~m~ 255 (275)
. |.-.+++..|...+.+..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hhhhhheecccchHHHHHHHhhcc
Confidence 3 334556666666665544
No 368
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.23 E-value=4.8e+02 Score=25.04 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC---C----------CcCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023910 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS---L----------EPEIQGFNALLKCLVGFKLRDLVVDCYE 217 (275)
Q Consensus 151 ~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G---~----------~pd~~tyn~lI~~~~~~g~~~~A~~l~~ 217 (275)
.|+..+......++... .|++..|+.++++.-.. | + .++....-.|++++. .|+.+.++.+++
T Consensus 194 egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~-~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~ 269 (509)
T PRK14958 194 ENVEFENAALDLLARAA--NGSVRDALSLLDQSIAY-GNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVT 269 (509)
T ss_pred cCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 47776766666665543 58888888888765421 2 1 133344455566555 488999999999
Q ss_pred HHHhCCCCCCHHH
Q 023910 218 LMKTVGCEPDRSS 230 (275)
Q Consensus 218 ~M~~~g~~pd~~t 230 (275)
+|.+.|..|....
T Consensus 270 ~l~~~g~~~~~il 282 (509)
T PRK14958 270 RLVEQGVDFSNAL 282 (509)
T ss_pred HHHHcCCCHHHHH
Confidence 9999999886443
No 369
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.20 E-value=94 Score=20.76 Aligned_cols=52 Identities=6% Similarity=0.018 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 153 YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 153 ~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
+.|....+|-|++.+++..-.++++..+.+.... |. -+..+|---+..+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~-g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQR-GS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHH
Confidence 4567778999999999999999999999998865 54 4667777777766653
No 370
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.12 E-value=2e+02 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHc
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKE 150 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~ 150 (275)
++|+-+-+|.-.++|+++.+.|.++
T Consensus 66 tViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 5666667777777777777777774
No 371
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.08 E-value=1.8e+02 Score=24.77 Aligned_cols=57 Identities=9% Similarity=-0.047 Sum_probs=36.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh-CCChhHHHHHHHHHH
Q 023910 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG-FKLRDLVVDCYELMK 220 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~ 220 (275)
+...+-+.|+++++...++++-.. +..++..--|.+-.||-. -|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEM-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHT-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455666777777777777777654 566677777777777643 455566666666665
No 372
>PLN03025 replication factor C subunit; Provisional
Probab=29.52 E-value=4e+02 Score=23.53 Aligned_cols=97 Identities=8% Similarity=-0.040 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC-----------CCcCHHHHHHHHHHHHhC
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS-----------LEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G-----------~~pd~~tyn~lI~~~~~~ 206 (275)
++..+.+...-++.|+.-+......++... .|++..|+..++......+ -.|....-..++++.. .
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-K 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-c
Confidence 344444554433347777777777777653 5888888888875431111 1123334445555554 6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
+++++|...+.+|...|+.|....... ...+
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l-~~~~ 268 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITTL-FRVV 268 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 899999999999999999998655433 4433
No 373
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.04 E-value=1.2e+02 Score=22.43 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g 242 (275)
++......+..-.|.++++.|.+.|...+..|.=--|+.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444444445555555555554444443333334444444
No 374
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.39 E-value=1.4e+02 Score=21.81 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH 175 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~ 175 (275)
.+++.+...+..-.|.++++.++++ +...+..|---.|+.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 5667777777777899999999885 667777777777888888887654
No 375
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.88 E-value=20 Score=23.23 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFG 168 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~ 168 (275)
|-..+.+.+|..|.++ .+.|....||=.|+-|.
T Consensus 6 gy~~~lI~vFK~~pSr-~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSR-NYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCccc-ccCccceeeeeeHHHHH
Confidence 4456677888888776 67887777776666554
No 376
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.71 E-value=83 Score=21.24 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 170 NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
.|+.+.+.+++++.... |+.|..+..+.+..+.-+-|
T Consensus 14 ~~d~~~~~~~~~~~l~~-g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQ-GYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHC-SSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 46777888888887765 77787777777777665544
No 377
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=27.08 E-value=2e+02 Score=19.93 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHh--cCCHHHHHHHHHHHHHHhC
Q 023910 195 GFNALLKCLVGFKL---RDLVVDCYELMKTVGCEPDRSSYR--TVINGLEA--MEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 195 tyn~lI~~~~~~g~---~~~A~~l~~~M~~~g~~pd~~ty~--~li~~~~~--~g~~~~A~~l~~~m~~~~~ 259 (275)
.|-.++..|.+.++ +-.|.++=+++.+.++.|..++=. .++..+.. ..+...+.+++-+++..||
T Consensus 3 ~Y~~lL~~yl~~~~E~~L~~~~~~~r~~i~~~I~PEeIv~iH~~~v~~l~~~~~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 3 QYKDLLREYLETQDEQSLYQAQEFGRELIEKDISPEEIVEIHKSAVQELSPSLPEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcC
Confidence 46677777777665 224555666666788888655321 23333332 3456666777777666554
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=26.96 E-value=3.6e+02 Score=22.71 Aligned_cols=74 Identities=19% Similarity=0.121 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.++..+...|+.+.|..++..+.- ...+...-+.++.. ..++.+.+|..+-.....+. ....+..++..+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~----~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL----RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh----hHHHHHHHHHHHHH
Confidence 678888889999999999999744 22334444445555 45688999988776654321 14567777777664
Q ss_pred CC
Q 023910 206 FK 207 (275)
Q Consensus 206 ~g 207 (275)
..
T Consensus 185 ~~ 186 (226)
T PF13934_consen 185 EC 186 (226)
T ss_pred Hh
Confidence 33
No 379
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=26.60 E-value=1.2e+02 Score=27.28 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHH
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTV-GCEPDRSSYRTV 234 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~l 234 (275)
|.---=+|++.|.++|.+++|.++....+.- .--|+......+
T Consensus 105 diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 105 DILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 3444458899999999999999988877632 123564443333
No 380
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=25.92 E-value=4.5e+02 Score=22.95 Aligned_cols=66 Identities=9% Similarity=-0.102 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 191 PEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP---DRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 191 pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
....+|..+...+-+.|.++.|...+..+...+..+ +....-.-.+.+-..|+.++|...+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777788888999999999998887644211 222333345556678888999988888777
No 381
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.88 E-value=99 Score=17.60 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLY 160 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~ty 160 (275)
++.|..+|+.... +.|++.+|
T Consensus 3 ~dRAR~IyeR~v~---~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL---VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH---hCCCchHH
Confidence 4556666666654 24555555
No 382
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.86 E-value=2.5e+02 Score=28.58 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=53.8
Q ss_pred HHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhcCCHHHHH-------HH
Q 023910 180 YFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK--TVGCEPDRSSYRTVINGLEAMEEVAFSG-------II 250 (275)
Q Consensus 180 f~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~pd~~ty~~li~~~~~~g~~~~A~-------~l 250 (275)
|.++.. .++|+++.-++.=.-.-+...+..-+++.=-+- -.+-.-|..+|.-=|+.+|+..+...|. -+
T Consensus 790 fse~vn--niKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLHfL 867 (1102)
T KOG1924|consen 790 FSEQVN--NIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLHFL 867 (1102)
T ss_pred HHHHHh--hcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccchhhHHHHHH
Confidence 455553 489998765543333333444444444433332 1234556788888888888887766554 24
Q ss_pred HHHHHHHhCC-ccchHHHHHHH
Q 023910 251 RQDAFKYYGD-LEFLEEDEEDI 271 (275)
Q Consensus 251 ~~~m~~~~~~-~~~~~e~~~~~ 271 (275)
.+.+.+.||. ++|-++++..+
T Consensus 868 ae~~e~kypd~l~F~ddl~hv~ 889 (1102)
T KOG1924|consen 868 AEICEEKYPDILKFPDDLEHVE 889 (1102)
T ss_pred HHHHHHhChhhhcchhhHHHHH
Confidence 4556777887 47877776554
No 383
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.81 E-value=7.4e+02 Score=25.46 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=49.0
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-------------CCCCcCHHHHHHHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-------------NSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-------------~G~~pd~~tyn~lI~~~~ 204 (275)
++..+.+.+..+..|+.-+......|.+. ..|++.+|+.++++.... .| .+|...+..++.++.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG-~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLG-ALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444455543333555555554444432 357777777776653321 01 133334555556444
Q ss_pred hCCChhHHHHHHHHHHhCCCCCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd 227 (275)
.|+..+++.++++|...|+.+.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4888889999999888887654
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.74 E-value=4.1e+02 Score=22.51 Aligned_cols=58 Identities=7% Similarity=-0.038 Sum_probs=44.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMK----TVGC-EPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~----~~g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
-|=.-|.+.|++++|..+|+.+. +.|. .+...+...+..+..+.|+.++...+.-++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45556889999999999999886 3454 4566677788888889999988777665543
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=25.52 E-value=3.2e+02 Score=21.20 Aligned_cols=47 Identities=19% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
.+..+-++.... +.+.|+...-.+-+.||-+.+++-.|.++|+-.+.
T Consensus 66 wEvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 66 WEVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555555553 46889988889999999999999999999988874
No 386
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=25.41 E-value=2.6e+02 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=9.6
Q ss_pred HHHHHHHHHhCCChhHHHHHH
Q 023910 196 FNALLKCLVGFKLRDLVVDCY 216 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~ 216 (275)
|..++.++-+.|-.+++..+|
T Consensus 81 ~~~~~~~l~r~g~~~~~~~yf 101 (106)
T PF14518_consen 81 YRRLIKGLRRLGLDEEDLEYF 101 (106)
T ss_dssp HHHHHHHHHHTT--TTTTHHH
T ss_pred HHHHHHHHHHcCCCccccchh
Confidence 555555555555433444443
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.29 E-value=3.3e+02 Score=25.90 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 023910 161 ADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA 240 (275)
Q Consensus 161 n~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~ 240 (275)
..|+.-|.-.|+..+|..-.+++..- +--..+.|.+++-+.-+.|+-...+.++++.-..|+ +|-|-|-.+|.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP--fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP--FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC--cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45777788888888888877776421 344567888888888888887777777777766654 466667777766
Q ss_pred c
Q 023910 241 M 241 (275)
Q Consensus 241 ~ 241 (275)
-
T Consensus 587 V 587 (645)
T KOG0403|consen 587 V 587 (645)
T ss_pred h
Confidence 4
No 388
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.07 E-value=3.6e+02 Score=21.53 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHV 176 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A 176 (275)
.++++.+...++.-.|.+|++.+++. +...+..|---.|+.+...|-+.+.
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEEE
Confidence 36777777777777888899988885 6667777766677788888876543
No 389
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=25.06 E-value=6.3e+02 Score=24.40 Aligned_cols=89 Identities=8% Similarity=-0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH-------------
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL------------- 203 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~------------- 203 (275)
.++-.+.++....+.|+.-+...+..+. ....|.+.+|+.++++...- | .+.+|+..+-...
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~-~--~~~It~~~v~~~lG~~~~~~~~~~~~ 254 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAF-G--EGEITLESVRDMLGLTDIEKLLSLLE 254 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHc-c--CCcccHHHHHHHhCCCCHHHHHHHHH
Confidence 4455566666655557777777766554 34568889999999988643 2 1333333333222
Q ss_pred -HhCCChhHHHHHHHHHHhCCCCCCHHH
Q 023910 204 -VGFKLRDLVVDCYELMKTVGCEPDRSS 230 (275)
Q Consensus 204 -~~~g~~~~A~~l~~~M~~~g~~pd~~t 230 (275)
...|+..+++..++++.+.|..|....
T Consensus 255 ~i~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 255 AILKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HHHccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 347889999999999999999887554
No 390
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.05 E-value=1.2e+02 Score=21.31 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=18.4
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEIL 179 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~l 179 (275)
+.+.+++..-+++.| ...|...|+.++.+.|.-+-|..+
T Consensus 47 eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 47 MQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred HHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhh
Confidence 334444444444333 223455555555555555555444
No 391
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.76 E-value=7.5e+02 Score=25.17 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHHhHHc
Q 023910 134 QNHCLLALKVFEDIRKE 150 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~ 150 (275)
.|++++|.+++-+|.++
T Consensus 747 ~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred hcchhHhhhhhhccchh
Confidence 37888888888888665
No 392
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=4.9e+02 Score=22.81 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m 254 (275)
|-..|-.+.-..++..|+..+++-
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcch
Confidence 334444445555666666655543
No 393
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.27 E-value=4.8e+02 Score=22.78 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH----HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHH
Q 023910 87 LSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI----AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYAD 162 (275)
Q Consensus 87 l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~----~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~ 162 (275)
+....+.++..-+++.. +..+...+..-..+ ..|..+...|++..|+++..+..+ .--+..-|++
T Consensus 97 ~~~~~L~Il~~~rkr~~--------l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~---~l~~l~~~~c 165 (291)
T PF10475_consen 97 LTKSGLEILRLQRKRQN--------LKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQ---LLEELKGYSC 165 (291)
T ss_pred hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HHHhcccchH
Q ss_pred HHHHHHcCCCH-----HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 163 MIQVFGTNGLF-----QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 163 Li~~~~~~g~~-----~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
+=+.-.+-... +.....|.++-... |...|..++.||...|+...+.+-+..-.-..+...... ++..
T Consensus 166 ~~~L~~~L~e~~~~i~~~ld~~l~~~~~~F----d~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~---vv~~ 238 (291)
T PF10475_consen 166 VRHLSSQLQETLELIEEQLDSDLSKVCQDF----DPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFS---VVRS 238 (291)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_pred HHhc---CCHHHHHHHHHHHHHHhCCccchHHHHHHHhhhC
Q 023910 238 LEAM---EEVAFSGIIRQDAFKYYGDLEFLEEDEEDIAAYC 275 (275)
Q Consensus 238 ~~~~---g~~~~A~~l~~~m~~~~~~~~~~~e~~~~~~~~~ 275 (275)
+... .......--|+++-..-|.-.++...-+.....|
T Consensus 239 ~~~~~~~~~~~~~~~~y~~lC~~v~~~~~~~cl~~l~~~l~ 279 (291)
T PF10475_consen 239 YVEQSESSEERSSKMSYKDLCKQVPSDQFIPCLLELLEVLW 279 (291)
T ss_pred HHHhccccccccccCCHHHHHhhCCHHHHHHHHHHHHHHHH
No 394
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.24 E-value=6.5e+02 Score=25.92 Aligned_cols=81 Identities=6% Similarity=-0.065 Sum_probs=47.1
Q ss_pred HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC----------CCHHHHHHHHHHHH
Q 023910 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV----GCE----------PDRSSYRTVINGLE 239 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~----------pd~~ty~~li~~~~ 239 (275)
++..+.+.++.++.|+..+......++... .|++..++.+++++... ++. .+......+++++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~ 259 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA 259 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 444445555433347777776666555544 47888888888877621 121 12223334556554
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 023910 240 AMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 240 ~~g~~~~A~~l~~~m~~~ 257 (275)
.++...+..+++++++.
T Consensus 260 -~~D~a~al~~l~~Li~~ 276 (824)
T PRK07764 260 -AGDGAALFGTVDRVIEA 276 (824)
T ss_pred -cCCHHHHHHHHHHHHHc
Confidence 46777788777776643
No 395
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=24.13 E-value=77 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcCHHHHH
Q 023910 170 NGLFQHVEILYFYLKTENSLEPEIQGFN 197 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd~~tyn 197 (275)
.|+.+.|.++++.++.+ |+.|-.+.|.
T Consensus 10 ~G~~~ra~riL~~L~~E-g~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAE-GVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHT-T--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CccHHHHHHH
Confidence 57788888888888776 7888776664
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.06 E-value=3.1e+02 Score=20.72 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 023910 139 LALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYF 181 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~ 181 (275)
.+.++|..|..+ |+.-. ..-|..--..+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555442 33222 3334444444445555555555543
No 397
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.02 E-value=9.2e+02 Score=25.94 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 023910 153 YKPQVSLYADMIQVFGTN----GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR 228 (275)
Q Consensus 153 ~~p~~~tyn~Li~~~~~~----g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 228 (275)
+.|+...+..+..+|+.+ +.+++|--+|+.--+ -.--+.+|-.+|+|.+|+.+..+|... -|.
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de 997 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEG---KDE 997 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHH
Confidence 455666666655554433 555555555543311 122345566666666666665555311 111
Q ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 229 S--SYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 229 ~--ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
. +--.|+.-+...+++-+|-++..+
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 1 113445555555555555555444
No 398
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.96 E-value=1.7e+02 Score=22.98 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=15.8
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 235 (275)
+.|.+.+...++++|.+.|+......|+-++
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL 151 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEIL 151 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHH
Confidence 3444555555555555555555555554443
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.80 E-value=5.7e+02 Score=23.44 Aligned_cols=53 Identities=8% Similarity=-0.071 Sum_probs=29.5
Q ss_pred HHcCCCHHHHHHHHHHhHhcCCCCcCHH--HHHHHHHHHHh--CCChhHHHHHHHHHHh
Q 023910 167 FGTNGLFQHVEILYFYLKTENSLEPEIQ--GFNALLKCLVG--FKLRDLVVDCYELMKT 221 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M~~~~G~~pd~~--tyn~lI~~~~~--~g~~~~A~~l~~~M~~ 221 (275)
+.+.+++..|.++|+++..+ +.++.. .|..+..||.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33566677777777777642 444443 44444455544 3456666666665543
No 400
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.76 E-value=1.3e+02 Score=21.18 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHH
Q 023910 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCY 216 (275)
Q Consensus 172 ~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~ 216 (275)
..+++.+++...+.+.| ...|...|+.++.+.|.-+-|..+|
T Consensus 45 ~~eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 45 IKMQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 35677777777665434 3357777888888887777666654
No 401
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=23.61 E-value=2.7e+02 Score=19.63 Aligned_cols=38 Identities=11% Similarity=0.310 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHhHH-cCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 023910 134 QNHCLLALKVFEDIRK-EQWYKPQVSLYADMIQVFGTNGLFQHV 176 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~-~~g~~p~~~tyn~Li~~~~~~g~~~~A 176 (275)
.|..+.|..+++.+.+ + .| .-+..+++++-..|...-|
T Consensus 47 ~g~~~aa~~Ll~~L~~~r---~~--~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 47 KGNIAAAEELLDRLERCD---KP--GWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred cChHHHHHHHHHHHHHhc---cC--CcHHHHHHHHHHcCCccHH
Confidence 3666666666666664 2 12 2355666666666654433
No 402
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.07 E-value=7.4e+02 Score=24.47 Aligned_cols=75 Identities=7% Similarity=0.008 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC--C----------CcCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023910 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS--L----------EPEIQGFNALLKCLVGFKLRDLVVDCYEL 218 (275)
Q Consensus 151 ~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G--~----------~pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 218 (275)
.|+..+......|+... .|++..|...++....-.| + .++...+-.|+++.. .|+..+|+.++++
T Consensus 196 egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ll~~ 272 (614)
T PRK14971 196 EGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLLLFDE 272 (614)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 47766666555555443 4788888888776432111 1 123334445555554 4689999999999
Q ss_pred HHhCCCCCCH
Q 023910 219 MKTVGCEPDR 228 (275)
Q Consensus 219 M~~~g~~pd~ 228 (275)
|...|..|..
T Consensus 273 Ll~~g~~~~~ 282 (614)
T PRK14971 273 ILNKGFDGSH 282 (614)
T ss_pred HHHcCCCHHH
Confidence 9999988763
No 403
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=23.05 E-value=2.6e+02 Score=19.20 Aligned_cols=42 Identities=7% Similarity=-0.054 Sum_probs=22.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~ 241 (275)
.++..+.. ++++++...+.++...|+.++.. .+.+.+.+.+.
T Consensus 10 ~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~I-l~~l~~~l~~~ 51 (89)
T PF08542_consen 10 EILESCLN-GDFKEARKKLYELLVEGYSASDI-LKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHTT--HHHH-HHHHHHHHHTS
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHh
Confidence 44444433 36777777777776556665543 35555555554
No 404
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.05 E-value=6.4e+02 Score=23.78 Aligned_cols=130 Identities=8% Similarity=-0.001 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCCcCH-HHHHHH
Q 023910 122 FDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEI-QGFNAL 199 (275)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G~~pd~-~tyn~l 199 (275)
.....-+.++...++++..-..|-.-.-. ......+.--||+...-.|+.+...+..+.|+++ .|..|.. +| --+
T Consensus 202 sqi~~ql~~~~s~~dp~~va~~~g~s~~y--~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~V 278 (525)
T KOG3677|consen 202 SQISIQLTASVSNKDPALVALIFGASQPY--ANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQV 278 (525)
T ss_pred HHHHHHHHHHhcCCChhhhhhhhccccHH--HhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eeh
Confidence 34445566666666666655555433211 1223455556777777788988888888888753 3445544 33 344
Q ss_pred HHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 200 LKCLVGFKLRDLVVDCYELMKT-----VGCEPDRSSYR-TVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~ty~-~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
=-||.-.|++.+|.+.|-...- ..+.|. .+|. .+| ....|....++.-....||+
T Consensus 279 GFayLmmrryadai~~F~niLlyIqrtks~~~~-~~y~~d~i-----nKq~eqm~~llai~l~~yPq 339 (525)
T KOG3677|consen 279 GFAYLMMRRYADAIRVFLNILLYIQRTKSMFSR-TTYQYDMI-----NKQNEQMHHLLAICLSMYPQ 339 (525)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhhHhhh-----hhhHHHHHHHHHHHHHhCch
Confidence 5566777888899988876542 222222 1221 111 23455666666666666774
No 405
>COG5210 GTPase-activating protein [General function prediction only]
Probab=22.97 E-value=2.2e+02 Score=27.10 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 178 ~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
++++.|+.+ |+.+...++.-++..+.+...++.|.++++.+.-.|+.-....+.+++..
T Consensus 363 ~l~~hl~~~-~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 363 ELYEHLLRE-GVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHc-CCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 466777765 78899999999999999999999999999988887876655555555544
No 406
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.88 E-value=5.6e+02 Score=24.76 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=58.9
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCC-cCHHHHHHHHHHHHhCCChhH
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLE-PEIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~-pd~~tyn~lI~~~~~~g~~~~ 211 (275)
..|+++.+.+......+. +.....+-.+++....+.|++++|..+-+-|... .++ |.+++..+ ..--..|.+|+
T Consensus 335 ~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-eie~~ei~~iaa--~sa~~l~~~d~ 409 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EIEDEEVLTVAA--GSADALQLFDK 409 (831)
T ss_pred HhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-ccCChhheeeec--ccHHHHhHHHH
Confidence 458888888888887664 5567788889999999999999999998888754 343 33332211 11233577888
Q ss_pred HHHHHHHHH
Q 023910 212 VVDCYELMK 220 (275)
Q Consensus 212 A~~l~~~M~ 220 (275)
++..+++..
T Consensus 410 ~~~~wk~~~ 418 (831)
T PRK15180 410 SYHYWKRVL 418 (831)
T ss_pred HHHHHHHHh
Confidence 888887775
No 407
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.64 E-value=3e+02 Score=19.83 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRK 149 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~ 149 (275)
....+|..|...++.++|..-+.++..
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCC
Confidence 344566666666666666666666643
No 408
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=22.58 E-value=4.3e+02 Score=22.52 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=45.2
Q ss_pred CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 023910 189 LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP---DRSSY--RTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 189 ~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p---d~~ty--~~li~~~~~~g~~~~A~~l~~~m 254 (275)
+.++..-+|.||--|.-.-.+.+|-..|.. +.|+.| |..++ ..-|......|++++|.+...+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 677777778877776665555556665553 667766 44444 36778889999999999988774
No 409
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.47 E-value=8.6e+02 Score=25.02 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=49.9
Q ss_pred HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHh
Q 023910 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG---C----------EPDRSSYRTVINGLEA 240 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~----------~pd~~ty~~li~~~~~ 240 (275)
++..+.++.+....|+..+......+... -.|++.+|+.++++....+ + .+|...+..|++.+..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 45555555544333676666665555443 3688888888877655322 1 2444456667775544
Q ss_pred cCCHHHHHHHHHHHHH
Q 023910 241 MEEVAFSGIIRQDAFK 256 (275)
Q Consensus 241 ~g~~~~A~~l~~~m~~ 256 (275)
|+..++.++++++..
T Consensus 259 -~d~~~~l~~~~~l~~ 273 (830)
T PRK07003 259 -GDGPEILAVADEMAL 273 (830)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 888888888888765
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.30 E-value=5.1e+02 Score=24.16 Aligned_cols=64 Identities=5% Similarity=-0.019 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-C-----CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTEN-S-----LEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G-----~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
-.+.-.|++.++-.|++..|+++++.+.-.+ + ....+.||--+=-+|.-.+++.+|.++|....
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778889999999999999998774221 1 12334556666667778889999999888664
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.27 E-value=6.2e+02 Score=23.31 Aligned_cols=49 Identities=20% Similarity=0.074 Sum_probs=37.9
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 023910 195 GFNALLKCLVG---FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243 (275)
Q Consensus 195 tyn~lI~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~ 243 (275)
.+..+|+++.+ .++.+.|+..+..|.+.|..|..+.-..++.++-.-|.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 45556666665 58999999999999999999998777777777665554
No 412
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.25 E-value=3.6e+02 Score=22.90 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhHhcCCCC-------cCHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHhCCCC---CCHHHHHH
Q 023910 173 FQHVEILYFYLKTENSLE-------PEIQGFNALLKCLVGFKL---------RDLVVDCYELMKTVGCE---PDRSSYRT 233 (275)
Q Consensus 173 ~~~A~~lf~~M~~~~G~~-------pd~~tyn~lI~~~~~~g~---------~~~A~~l~~~M~~~g~~---pd~~ty~~ 233 (275)
.+.|+.++..|-.+ .++ -...-|-.+-.+|++.|- .+.-.++++.-.+.|++ |. .|++
T Consensus 137 vetAiaml~dmG~~-SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPH--IYss 213 (236)
T TIGR03581 137 IETAIAMLKDMGGS-SVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPH--VYSS 213 (236)
T ss_pred HHHHHHHHHHcCCC-eeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccc--ccee
Confidence 46778888777533 222 245668888888888773 34455666666677764 54 7788
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 023910 234 VINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 234 li~~~~~~g~~~~A~~l~~~m 254 (275)
+|+.-.-.-++++..+++..+
T Consensus 214 iIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 214 IIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred ccccccCCCCHHHHHHHHHHh
Confidence 887766667788877777654
No 413
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.23 E-value=3.7e+02 Score=20.72 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=40.3
Q ss_pred HhHHcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 146 DIRKEQWYKPQVSLYADMIQVFGTN-GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 146 ~m~~~~g~~p~~~tyn~Li~~~~~~-g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
.+++ .|++++..= -.++..+... +..-.|.++++.++++ +...+..|---.|+.+...|.+.
T Consensus 7 ~l~~-~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKK-AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHH-cCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCEE
Confidence 3444 477766542 3445555543 4567888888888765 66677777777777777777654
No 414
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.12 E-value=1e+03 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHhhhcccchhHHh
Q 023910 12 QQDIYCIAWLLSLARCDRKGIMMSS 36 (275)
Q Consensus 12 ~~~~~~~~~~~~~a~~~~~~~~~~~ 36 (275)
.|+.++.+.+.++++-.++-+..|.
T Consensus 788 ~~~~~~~~ilTs~vk~~~~~ie~aL 812 (1265)
T KOG1920|consen 788 APDKFNLFILTSYVKSNPPEIEEAL 812 (1265)
T ss_pred CcchhhHHHHHHHHhcCcHHHHHHH
Confidence 4557777777777777766555443
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.06 E-value=3.8e+02 Score=20.78 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 142 KVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 142 ~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
.+-..++++ |++++.. =-.+++.+..++..-.|.+++++++.+ |..-+..|---.++.+...|-+.
T Consensus 7 ~~~~~lk~~-glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEA-GLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHc-CCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCEE
No 416
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.05 E-value=7.5e+02 Score=24.16 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=52.6
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCC--CCcC----------HHHHHHHHHHHHhC
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENS--LEPE----------IQGFNALLKCLVGF 206 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G--~~pd----------~~tyn~lI~~~~~~ 206 (275)
+..+.+.+...+.|+.-+......|+... .|++..|+..++++....| +..+ ......++++.. .
T Consensus 183 el~~~L~~~a~~egl~i~~eal~~La~~s--~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal~-~ 259 (585)
T PRK14950 183 DMAAHLRKIAAAEGINLEPGALEAIARAA--TGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEALL-A 259 (585)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-c
Confidence 33444444433346666666666665533 4788888888887643111 1111 122334555554 5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSS 230 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~t 230 (275)
|+.++|++++++|.+.|..|-...
T Consensus 260 ~d~~~al~~l~~L~~~g~~~~~il 283 (585)
T PRK14950 260 KDLKAALRTLNAVAADGADLRQFT 283 (585)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 889999999999998888655443
No 417
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.99 E-value=3e+02 Score=19.62 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=25.0
Q ss_pred HHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 178 ILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 178 ~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
+||+--... |+..|...|-.++..+--+=-++...++++.|-
T Consensus 29 EL~ELa~~A-Gv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLA-GVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHh-CCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555443 666666666666666555555666666666654
No 418
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=6e+02 Score=23.00 Aligned_cols=73 Identities=11% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHhcCCHHHHHHH-HHHhHHcCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 130 ELLRQNHCLLALKV-FEDIRKEQWYKPQV----SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 130 ~~~~~g~~~~A~~l-f~~m~~~~g~~p~~----~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
-..+..-+++.... =++|++. --|+. +.|++++++--=+ +-.++..+-.-+ ...+|..|+.++|
T Consensus 264 q~s~e~p~~evi~~VKee~k~~--nlPe~eVi~ivWs~iMsaveWn----Kkeelva~qalr-----hlK~yaPLL~af~ 332 (412)
T KOG2297|consen 264 QVSEEDPVKEVILYVKEEMKRN--NLPETEVIGIVWSGIMSAVEWN----KKEELVAEQALR-----HLKQYAPLLAAFC 332 (412)
T ss_pred HhccCCCHHHHHHHHHHHHHhc--CCCCceEEeeeHhhhhHHHhhc----hHHHHHHHHHHH-----HHHhhhHHHHHHh
Confidence 33333445554433 3455552 34553 5677777754333 222222221111 3567999999999
Q ss_pred hCCChhHHH
Q 023910 205 GFKLRDLVV 213 (275)
Q Consensus 205 ~~g~~~~A~ 213 (275)
-.|+.+-++
T Consensus 333 s~g~sEL~L 341 (412)
T KOG2297|consen 333 SQGQSELEL 341 (412)
T ss_pred cCChHHHHH
Confidence 999877654
No 419
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=21.77 E-value=7.6e+02 Score=24.14 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHH---cCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHhHhcCC--CCcCHHHHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRK---EQWYKPQVSLYADM-IQVFGTNGLFQHVEILYFYLKTENS--LEPEIQGFNALL 200 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~---~~g~~p~~~tyn~L-i~~~~~~g~~~~A~~lf~~M~~~~G--~~pd~~tyn~lI 200 (275)
++..+.+.+... |.+..++..+ ..+..+=...|.-| +..+...++...|.+.++.+..... ..|-+..+-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q ss_pred HHHHh--CCChhHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhCCcc
Q 023910 201 KCLVG--FKLRDLVVDCYELMKTVGCEP---------DRSSYRTVINGLE--AMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 201 ~~~~~--~g~~~~A~~l~~~M~~~g~~p---------d~~ty~~li~~~~--~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
.+... .+..+++.+.++++......+ -..+|..+++.++ ..|+++.+.+.++++...+.+.+
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~ 259 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIK 259 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
No 420
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.52 E-value=6e+02 Score=22.82 Aligned_cols=73 Identities=8% Similarity=-0.024 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-------------CCCCcCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023910 151 QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-------------NSLEPEIQGFNALLKCLVGFKLRDLVVDCYE 217 (275)
Q Consensus 151 ~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-------------~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~ 217 (275)
.|+.-+......|+.. -.|+...+...++.+..- -+..++...|. ++++.. .|+..+|..+++
T Consensus 183 ~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai~-~~~~~~a~~~~~ 258 (367)
T PRK14970 183 EGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLIL-ENKIPELLLAFN 258 (367)
T ss_pred cCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHHH-cCCHHHHHHHHH
Confidence 4665565666666553 236777777777665421 01122222333 455543 478888888888
Q ss_pred HHHhCCCCCC
Q 023910 218 LMKTVGCEPD 227 (275)
Q Consensus 218 ~M~~~g~~pd 227 (275)
.+...|..|-
T Consensus 259 ~l~~~~~~~~ 268 (367)
T PRK14970 259 EILRKGFDGH 268 (367)
T ss_pred HHHHcCCCHH
Confidence 8887777664
No 421
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.49 E-value=3.3e+02 Score=24.21 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 023910 194 QGFNALLKCLVG---FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA 245 (275)
Q Consensus 194 ~tyn~lI~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~ 245 (275)
..+--+|+|+.| ..+.|.|+-.+..|.+.|-.|..+.=..++-++-.-|.-+
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAd 178 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNAD 178 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 344455777765 6789999999999999998888888778887777777543
No 422
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=20.84 E-value=2.2e+02 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
+-.||+-+|+++-+.| .+-=.+++.+|--. |...|+.++..
T Consensus 72 ~GlsYS~fi~gLkkA~-I~inRKvLadlAi~-----d~~aF~~lv~~ 112 (118)
T COG0292 72 NGLSYSRFINGLKKAG-IEIDRKVLADLAIN-----DPAAFAALVEK 112 (118)
T ss_pred cCCcHHHHHHHHHHcC-chhhHHHHHHHHhc-----CHHHHHHHHHH
Confidence 4456788888877776 44445556666432 67777777654
No 423
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.82 E-value=8.1e+02 Score=24.07 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC--------------CCCcCHHHHHHHHHHHHhC
Q 023910 141 LKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN--------------SLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 141 ~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~--------------G~~pd~~tyn~lI~~~~~~ 206 (275)
.+.+....++.|+.-+......++. ...|++..|+.+++++..-. |. .+......++.+. ..
T Consensus 183 ~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~-~~~~~i~~lv~al-~~ 258 (584)
T PRK14952 183 RALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGA-TDVALIDDAVDAL-AA 258 (584)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCC-CCHHHHHHHHHHH-Hc
Confidence 3333333333366666665555544 34588888888888764311 11 1222233455543 45
Q ss_pred CChhHHHHHHHHHHhCCCCCCH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDR 228 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~ 228 (275)
++...++.+++++.+.|..|..
T Consensus 259 ~d~~~al~~l~~l~~~g~d~~~ 280 (584)
T PRK14952 259 DDAAALFGAIESVIDAGHDPRR 280 (584)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 8899999999999988887753
No 424
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=20.78 E-value=3.7e+02 Score=22.70 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=23.9
Q ss_pred hhhcccchhHHhhhhhcccccccccccccCCCcccccccchhhhhhhccCCC
Q 023910 25 ARCDRKGIMMSSSVAKSASWSDVKVKPWHNTQKQQVTATRSMLVIEMRDRGQ 76 (275)
Q Consensus 25 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (275)
+-.++.|.+.+.++-++. .+-.|..+.+....++|.++++..
T Consensus 66 vD~d~sg~i~~~eLq~aL----------sn~~~~~Fs~~TcrlmI~mfd~~~ 107 (221)
T KOG0037|consen 66 VDRDRSGRILAKELQQAL----------SNGTWSPFSIETCRLMISMFDRDN 107 (221)
T ss_pred hCccccccccHHHHHHHh----------hcCCCCCCCHHHHHHHHHHhcCCC
Confidence 456667766666665541 112344455555667888875543
No 425
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.76 E-value=9.1e+02 Score=24.64 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 155 p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
-|....-.|-+++.+.|.-++|.+-|-+-. . | .+-+..|...+.|.+|.++-+..
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRS----L-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhcc----C-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 355556667788888888888888775432 1 1 24567778888888888876543
No 426
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.70 E-value=6.9e+02 Score=24.18 Aligned_cols=15 Identities=0% Similarity=-0.237 Sum_probs=7.4
Q ss_pred cCCCHHHHHHHHHHh
Q 023910 169 TNGLFQHVEILYFYL 183 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M 183 (275)
...+.+.|+..|+..
T Consensus 261 ~~~d~e~a~~~l~~a 275 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLA 275 (552)
T ss_pred ccccHHHHHHHHHHH
Confidence 334455555555544
No 427
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.69 E-value=1.5e+02 Score=21.90 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=17.7
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 164 IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 164 i~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
++.+...+..-.|.++++.|+.+ |...+..|.---|+.+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKK-GPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHT-TTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhc-cCCcCHHHHHHHHHHHHHCC
Confidence 33333333344455555555432 44444444433344444444
No 428
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.67 E-value=8.3e+02 Score=24.18 Aligned_cols=91 Identities=14% Similarity=-0.007 Sum_probs=57.3
Q ss_pred HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHh
Q 023910 174 QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG---C----------EPDRSSYRTVINGLEA 240 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~----------~pd~~ty~~li~~~~~ 240 (275)
++..+.+.......|+..+......++. .-.|++..|+.++++....| + .+|......+++++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4444444443333378888777777766 34589999999988765333 1 1445555667776655
Q ss_pred cCCHHHHHHHHHHHHHHhCC-ccchHHH
Q 023910 241 MEEVAFSGIIRQDAFKYYGD-LEFLEED 267 (275)
Q Consensus 241 ~g~~~~A~~l~~~m~~~~~~-~~~~~e~ 267 (275)
|+...+.++++++.+.-.+ ..+++++
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~~il~~l 290 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAASTLEEM 290 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999888764222 2344444
No 429
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.46 E-value=2.9e+02 Score=23.16 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRK 149 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~ 149 (275)
++++-.|-+..+|.+++++++.|.+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999999999999999976
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=20.44 E-value=3.2e+02 Score=19.20 Aligned_cols=17 Identities=6% Similarity=-0.117 Sum_probs=9.6
Q ss_pred HHcCCCHHHHHHHHHHh
Q 023910 167 FGTNGLFQHVEILYFYL 183 (275)
Q Consensus 167 ~~~~g~~~~A~~lf~~M 183 (275)
...-|+.++|+..+++-
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 44446666666666554
No 431
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=20.12 E-value=6.2e+02 Score=25.40 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=47.1
Q ss_pred CCCCcCHHHHHHHHHHHHhCC----ChhHHHHHHHHHHh----CCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 187 NSLEPEIQGFNALLKCLVGFK----LRDLVVDCYELMKT----VGCEPDRS---SYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 187 ~G~~pd~~tyn~lI~~~~~~g----~~~~A~~l~~~M~~----~g~~pd~~---ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
.|++.|+..|..|+.++-... -++++.++++.|+. -||.+... .-.+++.-|+..|+.+........
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~ 288 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQ 288 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 389999999999999987633 35788888888873 57765332 235788888888975554433333
No 432
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.05 E-value=2.4e+02 Score=18.79 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVE 177 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~ 177 (275)
+.+.+++.....+.| +..|...|+.++.+.|..+.|.
T Consensus 39 ~~~~~mL~~W~~~~~---~~at~~~L~~aL~~~~~~~~a~ 75 (79)
T cd01670 39 EQAYQLLLKWEEREG---DNATVGNLIEALREIGRRDDAA 75 (79)
T ss_pred HHHHHHHHHHHhccC---cCcHHHHHHHHHHHcCHHHHHH
Confidence 444445554444321 2445555555555555544443
No 433
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=20.04 E-value=15 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=8.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCH
Q 023910 153 YKPQVSLYADMIQVFGTNGLF 173 (275)
Q Consensus 153 ~~p~~~tyn~Li~~~~~~g~~ 173 (275)
+..+..+|.+.|++|++.|.+
T Consensus 20 Lsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 20 LSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp TTTTTTB------TTSS--EE
T ss_pred hhcccceeeeeecccccceEE
Confidence 344667899999999998864
No 434
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.04 E-value=2.4e+02 Score=23.59 Aligned_cols=59 Identities=2% Similarity=-0.163 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKTVGC--------------EPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~--------------~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
=-+++..|-+.-.+.++..+++.|.+-.+ .|--..-|.....+.+.|.+|-|..++++-
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 34566778888888888888888865322 233445677888899999999999998863
Done!