Query 023910
Match_columns 275
No_of_seqs 246 out of 2141
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 14:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.9E-29 6.4E-34 237.0 21.5 167 68-260 32-207 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.3E-32 224.6 19.2 131 125-257 30-169 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2.6E-25 8.8E-30 218.0 9.1 127 123-250 129-258 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 3.3E-21 1.1E-25 189.2 12.5 103 156-258 126-231 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 5.2E-12 1.8E-16 118.8 20.6 130 126-259 412-547 (597)
6 2xpi_A Anaphase-promoting comp 99.4 1.8E-11 6.2E-16 115.1 21.7 135 124-261 444-583 (597)
7 2fo7_A Synthetic consensus TPR 99.1 1E-08 3.4E-13 75.9 17.8 131 125-260 5-135 (136)
8 1w3b_A UDP-N-acetylglucosamine 99.0 2.4E-08 8.2E-13 88.9 17.4 131 125-260 241-371 (388)
9 2y4t_A DNAJ homolog subfamily 98.9 7.6E-08 2.6E-12 86.8 19.0 132 123-260 145-289 (450)
10 2vq2_A PILW, putative fimbrial 98.9 1.9E-07 6.4E-12 75.6 19.3 133 123-259 44-178 (225)
11 3mkr_A Coatomer subunit epsilo 98.9 3.4E-07 1.2E-11 79.2 21.1 143 124-272 133-279 (291)
12 3as5_A MAMA; tetratricopeptide 98.9 1.9E-07 6.4E-12 73.0 17.8 132 125-261 46-177 (186)
13 2y4t_A DNAJ homolog subfamily 98.9 1.6E-07 5.5E-12 84.7 18.6 131 125-261 215-362 (450)
14 2ho1_A Type 4 fimbrial biogene 98.8 1.7E-07 5.8E-12 77.8 16.7 152 106-261 54-208 (252)
15 1w3b_A UDP-N-acetylglucosamine 98.8 3.7E-07 1.3E-11 81.0 19.5 130 126-260 208-337 (388)
16 3mkr_A Coatomer subunit epsilo 98.8 4.7E-07 1.6E-11 78.4 18.6 124 126-260 106-232 (291)
17 2vq2_A PILW, putative fimbrial 98.8 6.6E-07 2.3E-11 72.3 18.4 136 124-262 79-216 (225)
18 3as5_A MAMA; tetratricopeptide 98.8 3E-07 1E-11 71.8 15.6 130 126-260 13-142 (186)
19 2q7f_A YRRB protein; TPR, prot 98.8 5.8E-07 2E-11 73.8 17.5 132 125-261 95-226 (243)
20 2ho1_A Type 4 fimbrial biogene 98.8 7E-07 2.4E-11 74.1 17.9 134 125-262 109-243 (252)
21 2q7f_A YRRB protein; TPR, prot 98.7 1.2E-06 4.1E-11 71.9 17.8 131 125-260 61-191 (243)
22 1fch_A Peroxisomal targeting s 98.7 4.2E-07 1.5E-11 79.5 15.9 131 128-261 188-318 (368)
23 4eqf_A PEX5-related protein; a 98.7 2.2E-07 7.4E-12 81.8 14.0 130 128-260 184-313 (365)
24 1xnf_A Lipoprotein NLPI; TPR, 98.6 1.4E-06 4.9E-11 72.8 16.1 154 90-260 23-176 (275)
25 3cv0_A Peroxisome targeting si 98.6 4.6E-07 1.6E-11 77.6 13.2 132 125-260 176-318 (327)
26 3hym_B Cell division cycle pro 98.6 1.1E-05 3.8E-10 68.9 21.7 132 124-260 93-225 (330)
27 4eqf_A PEX5-related protein; a 98.6 1.4E-06 4.8E-11 76.5 16.1 151 107-260 83-279 (365)
28 1fch_A Peroxisomal targeting s 98.6 5.3E-06 1.8E-10 72.5 19.5 150 108-260 83-283 (368)
29 3hym_B Cell division cycle pro 98.6 1.8E-06 6.3E-11 73.9 16.3 131 126-260 130-268 (330)
30 2pl2_A Hypothetical conserved 98.6 2.7E-06 9.1E-11 70.0 16.2 129 126-260 44-183 (217)
31 3uq3_A Heat shock protein STI1 98.6 3.8E-06 1.3E-10 69.2 16.9 130 126-258 84-237 (258)
32 3cv0_A Peroxisome targeting si 98.5 1.7E-06 5.9E-11 74.0 14.4 125 131-260 148-272 (327)
33 3vtx_A MAMA; tetratricopeptide 98.5 1E-05 3.4E-10 63.9 17.5 131 125-260 43-173 (184)
34 3ieg_A DNAJ homolog subfamily 98.5 2.5E-05 8.5E-10 67.3 21.2 131 125-260 124-266 (359)
35 1xnf_A Lipoprotein NLPI; TPR, 98.5 1.9E-06 6.5E-11 72.0 13.6 126 133-261 17-144 (275)
36 3vtx_A MAMA; tetratricopeptide 98.5 1.5E-05 5.3E-10 62.8 18.3 132 124-260 8-139 (184)
37 1a17_A Serine/threonine protei 98.5 7.6E-06 2.6E-10 62.9 15.6 133 124-261 16-150 (166)
38 3uq3_A Heat shock protein STI1 98.5 3.3E-06 1.1E-10 69.6 14.4 153 108-261 24-206 (258)
39 3nf1_A KLC 1, kinesin light ch 98.5 2.2E-06 7.5E-11 72.8 12.8 137 124-260 114-310 (311)
40 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.8E-05 6E-10 63.8 17.7 129 126-261 11-154 (213)
41 1na0_A Designed protein CTPR3; 98.4 7.9E-06 2.7E-10 59.2 14.0 101 157-260 9-109 (125)
42 1b89_A Protein (clathrin heavy 98.4 7.1E-08 2.4E-12 88.2 2.9 118 126-267 99-226 (449)
43 2fo7_A Synthetic consensus TPR 98.4 5.5E-06 1.9E-10 60.7 12.8 99 159-260 3-101 (136)
44 3ieg_A DNAJ homolog subfamily 98.4 1.5E-05 5.3E-10 68.7 17.5 132 124-261 74-221 (359)
45 1na0_A Designed protein CTPR3; 98.4 2.1E-05 7.1E-10 56.9 15.6 110 124-238 12-121 (125)
46 1b89_A Protein (clathrin heavy 98.4 5.8E-07 2E-11 82.2 7.9 124 123-268 124-248 (449)
47 2gw1_A Mitochondrial precursor 98.4 1.1E-05 3.9E-10 73.4 16.6 130 125-260 241-370 (514)
48 3edt_B KLC 2, kinesin light ch 98.4 5.1E-06 1.8E-10 69.2 12.6 135 125-259 47-200 (283)
49 3nf1_A KLC 1, kinesin light ch 98.4 6.2E-06 2.1E-10 69.9 13.2 137 124-260 72-227 (311)
50 3edt_B KLC 2, kinesin light ch 98.3 5.9E-06 2E-10 68.8 12.5 134 124-257 88-281 (283)
51 3fp2_A TPR repeat-containing p 98.3 1.8E-05 6.1E-10 72.8 16.4 127 129-260 284-410 (537)
52 2ond_A Cleavage stimulation fa 98.3 2.5E-05 8.7E-10 67.4 16.4 132 125-260 138-273 (308)
53 2gw1_A Mitochondrial precursor 98.3 9.3E-06 3.2E-10 74.0 14.2 132 126-260 343-481 (514)
54 4i17_A Hypothetical protein; T 98.3 3.5E-05 1.2E-09 63.0 16.1 130 126-260 12-149 (228)
55 3fp2_A TPR repeat-containing p 98.3 1.2E-05 4E-10 73.9 14.5 131 124-260 246-376 (537)
56 2e2e_A Formate-dependent nitri 98.3 2E-05 7E-10 61.8 13.6 124 133-261 22-148 (177)
57 4abn_A Tetratricopeptide repea 98.2 1.7E-05 5.7E-10 73.3 14.3 132 125-261 141-291 (474)
58 3mv2_B Coatomer subunit epsilo 98.2 4.5E-05 1.6E-09 66.6 16.2 147 108-260 85-243 (310)
59 2pl2_A Hypothetical conserved 98.2 6E-05 2.1E-09 61.7 16.3 127 126-258 10-148 (217)
60 4gyw_A UDP-N-acetylglucosamine 98.2 6.1E-05 2.1E-09 73.4 18.6 130 124-260 46-177 (723)
61 3u3w_A Transcriptional activat 98.2 9.3E-05 3.2E-09 63.3 17.8 135 126-260 80-228 (293)
62 3u4t_A TPR repeat-containing p 98.2 7.7E-05 2.6E-09 62.1 16.7 130 127-260 43-174 (272)
63 3u4t_A TPR repeat-containing p 98.2 2.9E-05 9.9E-10 64.8 13.8 131 126-260 8-140 (272)
64 2vyi_A SGTA protein; chaperone 98.2 9.6E-05 3.3E-09 53.7 15.1 115 125-244 16-130 (131)
65 3mv2_B Coatomer subunit epsilo 98.2 3.9E-05 1.3E-09 67.0 14.8 141 124-272 139-297 (310)
66 3qky_A Outer membrane assembly 98.2 0.00017 5.7E-09 60.3 18.4 141 125-267 56-234 (261)
67 1elr_A TPR2A-domain of HOP; HO 98.2 7.6E-05 2.6E-09 54.4 13.6 92 127-220 10-106 (131)
68 2lni_A Stress-induced-phosphop 98.1 5.9E-05 2E-09 55.4 12.8 102 156-260 15-116 (133)
69 1ouv_A Conserved hypothetical 98.1 0.0011 3.9E-08 55.4 22.3 121 126-257 79-215 (273)
70 3qky_A Outer membrane assembly 98.1 0.00039 1.3E-08 58.0 18.9 137 125-261 19-181 (261)
71 3gyz_A Chaperone protein IPGC; 98.1 7.7E-05 2.6E-09 58.1 13.4 108 157-267 36-143 (151)
72 2vsy_A XCC0866; transferase, g 98.1 0.00016 5.6E-09 67.8 18.1 130 126-260 28-160 (568)
73 2vyi_A SGTA protein; chaperone 98.1 0.00011 3.8E-09 53.4 13.4 103 156-261 11-113 (131)
74 1elw_A TPR1-domain of HOP; HOP 98.1 8.5E-05 2.9E-09 53.1 12.5 99 159-260 6-104 (118)
75 4i17_A Hypothetical protein; T 98.1 0.00025 8.6E-09 57.8 16.5 129 127-262 48-214 (228)
76 2vgx_A Chaperone SYCD; alterna 98.1 0.00018 6E-09 55.4 14.5 101 157-260 21-121 (148)
77 3q49_B STIP1 homology and U bo 98.0 0.00025 8.4E-09 52.7 14.9 103 155-260 7-109 (137)
78 2dba_A Smooth muscle cell asso 98.0 0.00029 9.8E-09 52.7 15.3 102 156-261 27-132 (148)
79 2xcb_A PCRH, regulatory protei 98.0 0.00018 6.2E-09 54.5 14.1 100 158-260 19-118 (142)
80 2ond_A Cleavage stimulation fa 98.0 0.00011 3.9E-09 63.2 14.4 127 125-257 103-232 (308)
81 2kck_A TPR repeat; tetratricop 98.0 7.6E-05 2.6E-09 52.9 11.2 102 157-260 6-109 (112)
82 2lni_A Stress-induced-phosphop 98.0 0.00021 7.2E-09 52.3 13.9 114 124-242 19-132 (133)
83 1ouv_A Conserved hypothetical 98.0 0.00065 2.2E-08 56.9 18.7 140 107-257 24-179 (273)
84 4gco_A Protein STI-1; structur 98.0 0.00021 7.3E-09 53.4 14.0 101 158-261 14-114 (126)
85 4gyw_A UDP-N-acetylglucosamine 98.0 0.00017 5.7E-09 70.3 16.6 128 125-260 13-143 (723)
86 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00016 5.3E-09 61.9 14.8 145 127-271 121-283 (293)
87 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00015 5.2E-09 56.2 13.5 101 157-260 11-111 (164)
88 3ro3_A PINS homolog, G-protein 98.0 8.6E-05 3E-09 56.0 11.3 137 125-261 13-162 (164)
89 2xev_A YBGF; tetratricopeptide 98.0 0.00032 1.1E-08 51.5 14.1 93 165-261 10-109 (129)
90 1elr_A TPR2A-domain of HOP; HO 98.0 0.00012 4.1E-09 53.3 11.7 103 157-261 4-112 (131)
91 2h6f_A Protein farnesyltransfe 98.0 0.0002 7E-09 64.3 15.3 166 90-261 98-273 (382)
92 4abn_A Tetratricopeptide repea 98.0 8.3E-05 2.8E-09 68.6 13.0 128 126-259 107-252 (474)
93 4gcn_A Protein STI-1; structur 98.0 0.0003 1E-08 52.6 13.7 103 157-261 8-116 (127)
94 1qqe_A Vesicular transport pro 97.9 7.5E-05 2.6E-09 64.0 11.3 137 124-260 80-231 (292)
95 3upv_A Heat shock protein STI1 97.9 0.00043 1.5E-08 50.9 14.1 98 158-258 5-102 (126)
96 3u3w_A Transcriptional activat 97.9 0.00076 2.6E-08 57.5 17.2 135 127-261 121-270 (293)
97 3ro2_A PINS homolog, G-protein 97.9 5.2E-05 1.8E-09 64.3 9.8 137 126-262 188-337 (338)
98 1p5q_A FKBP52, FK506-binding p 97.9 0.0003 1E-08 61.8 14.9 128 126-259 152-296 (336)
99 2vsy_A XCC0866; transferase, g 97.9 0.00017 5.8E-09 67.7 13.9 122 134-260 2-123 (568)
100 1a17_A Serine/threonine protei 97.9 0.00043 1.5E-08 52.8 14.0 102 157-261 13-114 (166)
101 1elw_A TPR1-domain of HOP; HOP 97.9 0.0013 4.5E-08 46.6 15.8 94 125-222 8-101 (118)
102 4ga2_A E3 SUMO-protein ligase 97.9 8.2E-05 2.8E-09 57.3 9.7 121 134-261 10-133 (150)
103 3urz_A Uncharacterized protein 97.9 0.00022 7.4E-09 57.9 12.6 127 127-261 60-190 (208)
104 3gw4_A Uncharacterized protein 97.9 0.00022 7.5E-09 56.5 12.3 137 126-262 31-181 (203)
105 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.0025 8.6E-08 52.0 19.1 134 124-260 44-216 (225)
106 4gco_A Protein STI-1; structur 97.9 0.00049 1.7E-08 51.4 13.3 95 127-227 19-113 (126)
107 2kck_A TPR repeat; tetratricop 97.9 0.00052 1.8E-08 48.4 13.0 93 126-222 11-106 (112)
108 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.001 3.5E-08 54.4 16.4 137 125-263 8-182 (225)
109 3sf4_A G-protein-signaling mod 97.8 0.00016 5.6E-09 63.4 12.2 138 125-262 191-341 (406)
110 2qfc_A PLCR protein; TPR, HTH, 97.8 0.0013 4.6E-08 55.9 17.5 136 124-259 78-227 (293)
111 3gw4_A Uncharacterized protein 97.8 0.00013 4.6E-09 57.8 10.2 127 132-260 3-139 (203)
112 4a1s_A PINS, partner of inscut 97.8 0.00021 7.2E-09 63.3 12.6 138 126-263 228-378 (411)
113 2ooe_A Cleavage stimulation fa 97.8 0.00036 1.2E-08 64.7 14.2 127 125-257 325-454 (530)
114 3qou_A Protein YBBN; thioredox 97.8 0.00069 2.4E-08 57.9 14.9 131 125-261 121-252 (287)
115 3sz7_A HSC70 cochaperone (SGT) 97.8 0.0012 4.2E-08 50.9 14.8 93 125-221 15-107 (164)
116 2r5s_A Uncharacterized protein 97.8 0.0005 1.7E-08 53.9 12.6 126 125-255 44-171 (176)
117 2h6f_A Protein farnesyltransfe 97.7 0.002 6.8E-08 57.8 17.9 126 130-260 106-232 (382)
118 3q49_B STIP1 homology and U bo 97.7 0.0021 7.3E-08 47.4 15.2 93 124-220 12-104 (137)
119 4f3v_A ESX-1 secretion system 97.7 0.0005 1.7E-08 59.2 12.9 130 126-260 107-240 (282)
120 2ooe_A Cleavage stimulation fa 97.7 0.00072 2.5E-08 62.7 14.8 133 125-260 360-495 (530)
121 3ulq_A Response regulator aspa 97.7 0.00071 2.4E-08 59.8 14.0 136 125-260 147-296 (383)
122 3upv_A Heat shock protein STI1 97.7 0.0016 5.4E-08 47.7 13.8 92 126-221 9-100 (126)
123 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00079 2.7E-08 53.9 13.0 98 157-260 6-103 (213)
124 3gyz_A Chaperone protein IPGC; 97.7 0.00098 3.4E-08 51.7 12.9 97 126-228 41-137 (151)
125 2xcb_A PCRH, regulatory protei 97.7 0.0013 4.4E-08 49.7 13.2 92 126-221 23-114 (142)
126 1qqe_A Vesicular transport pro 97.6 0.00081 2.8E-08 57.5 13.2 136 126-261 42-191 (292)
127 3q15_A PSP28, response regulat 97.6 0.0012 4E-08 58.3 14.5 136 126-261 146-294 (378)
128 2dba_A Smooth muscle cell asso 97.6 0.003 1E-07 46.9 14.8 92 126-222 33-128 (148)
129 2vgx_A Chaperone SYCD; alterna 97.6 0.0023 7.8E-08 49.0 14.3 92 126-221 26-117 (148)
130 3k9i_A BH0479 protein; putativ 97.6 0.00028 9.4E-09 51.6 7.9 84 134-220 3-88 (117)
131 2xev_A YBGF; tetratricopeptide 97.6 0.0036 1.2E-07 45.6 14.1 93 126-222 7-105 (129)
132 4ga2_A E3 SUMO-protein ligase 97.6 0.0028 9.6E-08 48.5 14.0 112 125-243 35-149 (150)
133 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0013 4.4E-08 56.6 12.7 136 124-261 79-227 (307)
134 1wao_1 Serine/threonine protei 97.5 0.00061 2.1E-08 62.9 11.2 118 131-252 16-134 (477)
135 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0021 7.3E-08 51.1 13.0 120 126-248 43-176 (198)
136 3n71_A Histone lysine methyltr 97.5 0.0018 6.3E-08 60.1 14.2 135 126-260 314-467 (490)
137 3ro2_A PINS homolog, G-protein 97.5 0.0015 5.2E-08 55.1 12.7 132 126-259 10-174 (338)
138 4a1s_A PINS, partner of inscut 97.5 0.00057 2E-08 60.4 10.3 130 126-258 53-213 (411)
139 2c2l_A CHIP, carboxy terminus 97.5 0.0028 9.5E-08 54.0 14.2 92 125-220 8-99 (281)
140 1hxi_A PEX5, peroxisome target 97.5 0.0015 5.2E-08 48.2 10.8 92 125-220 21-112 (121)
141 1hxi_A PEX5, peroxisome target 97.4 0.0019 6.6E-08 47.6 11.3 97 160-260 20-117 (121)
142 2fbn_A 70 kDa peptidylprolyl i 97.4 0.0031 1.1E-07 50.2 13.3 126 133-261 16-155 (198)
143 4gcn_A Protein STI-1; structur 97.4 0.0021 7.3E-08 47.7 11.5 103 126-232 13-120 (127)
144 2pzi_A Probable serine/threoni 97.4 0.00074 2.5E-08 65.1 10.9 130 124-259 436-565 (681)
145 3rkv_A Putative peptidylprolyl 97.4 0.0029 1E-07 48.6 12.4 66 194-260 64-129 (162)
146 2ifu_A Gamma-SNAP; membrane fu 97.4 0.0017 5.7E-08 55.9 12.0 135 126-261 41-188 (307)
147 3qou_A Protein YBBN; thioredox 97.4 0.0023 7.8E-08 54.6 12.7 128 124-256 154-283 (287)
148 3k9i_A BH0479 protein; putativ 97.4 0.00028 9.4E-09 51.6 5.9 94 169-264 2-97 (117)
149 3ulq_A Response regulator aspa 97.4 0.0019 6.6E-08 56.9 12.3 135 125-262 228-373 (383)
150 3rjv_A Putative SEL1 repeat pr 97.4 0.018 6.1E-07 46.6 17.1 115 136-257 68-197 (212)
151 3sf4_A G-protein-signaling mod 97.4 0.0027 9.2E-08 55.5 12.9 132 127-260 15-179 (406)
152 3urz_A Uncharacterized protein 97.3 0.0036 1.2E-07 50.5 12.6 110 127-243 10-137 (208)
153 1p5q_A FKBP52, FK506-binding p 97.3 0.0033 1.1E-07 55.0 13.0 101 156-260 146-262 (336)
154 1hz4_A MALT regulatory protein 97.3 0.0066 2.2E-07 53.0 14.4 136 126-261 58-207 (373)
155 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.005 1.7E-07 56.3 13.9 131 125-259 272-417 (457)
156 2e2e_A Formate-dependent nitri 97.2 0.015 5E-07 45.0 14.7 93 126-222 49-144 (177)
157 3q15_A PSP28, response regulat 97.2 0.0049 1.7E-07 54.3 13.1 130 130-259 110-253 (378)
158 2hr2_A Hypothetical protein; a 97.2 0.0088 3E-07 46.8 12.5 98 160-260 14-134 (159)
159 2l6j_A TPR repeat-containing p 97.1 0.00042 1.5E-08 49.2 4.3 64 156-221 3-66 (111)
160 1hz4_A MALT regulatory protein 97.1 0.023 7.8E-07 49.5 16.1 131 130-261 23-168 (373)
161 4e6h_A MRNA 3'-END-processing 97.1 0.015 5.2E-07 56.1 15.9 135 124-261 437-574 (679)
162 2if4_A ATFKBP42; FKBP-like, al 97.1 0.002 6.9E-08 56.5 8.9 128 126-260 184-331 (338)
163 2pzi_A Probable serine/threoni 97.1 0.003 1E-07 60.8 10.8 123 132-260 402-532 (681)
164 2c2l_A CHIP, carboxy terminus 97.0 0.013 4.4E-07 49.7 13.6 57 126-184 43-99 (281)
165 2xm6_A Protein corresponding t 97.0 0.15 5E-06 46.4 21.5 122 126-258 296-433 (490)
166 1ihg_A Cyclophilin 40; ppiase 97.0 0.012 4E-07 52.4 13.3 65 194-259 274-338 (370)
167 2kat_A Uncharacterized protein 97.0 0.0075 2.6E-07 43.3 10.0 77 140-220 4-80 (115)
168 1xi4_A Clathrin heavy chain; a 97.0 0.028 9.7E-07 58.1 17.0 112 123-254 1136-1247(1630)
169 2xm6_A Protein corresponding t 96.9 0.22 7.5E-06 45.2 22.2 113 134-257 128-252 (490)
170 3ro3_A PINS homolog, G-protein 96.9 0.0067 2.3E-07 45.1 9.7 104 157-260 9-121 (164)
171 4e6h_A MRNA 3'-END-processing 96.9 0.038 1.3E-06 53.3 16.6 148 110-259 365-535 (679)
172 1ihg_A Cyclophilin 40; ppiase 96.9 0.015 5E-07 51.8 12.7 121 124-248 226-361 (370)
173 1xi4_A Clathrin heavy chain; a 96.8 0.028 9.4E-07 58.1 15.8 113 123-257 1197-1309(1630)
174 1wao_1 Serine/threonine protei 96.7 0.013 4.5E-07 53.9 12.0 95 164-261 13-107 (477)
175 2kat_A Uncharacterized protein 96.7 0.014 4.8E-07 41.8 9.8 84 175-261 3-86 (115)
176 3rjv_A Putative SEL1 repeat pr 96.7 0.16 5.6E-06 40.7 19.7 125 124-257 21-158 (212)
177 4b4t_Q 26S proteasome regulato 96.7 0.018 6E-07 51.1 12.3 141 124-264 58-211 (434)
178 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.018 6.2E-07 52.5 12.4 101 156-260 267-383 (457)
179 4b4t_Q 26S proteasome regulato 96.7 0.042 1.4E-06 48.7 14.4 87 134-220 108-202 (434)
180 3rkv_A Putative peptidylprolyl 96.6 0.017 5.7E-07 44.2 10.2 99 126-228 16-130 (162)
181 4g1t_A Interferon-induced prot 96.6 0.032 1.1E-06 50.0 13.4 132 126-261 252-405 (472)
182 3n71_A Histone lysine methyltr 96.5 0.014 4.6E-07 54.2 10.5 92 166-257 318-422 (490)
183 2if4_A ATFKBP42; FKBP-like, al 96.5 0.01 3.6E-07 51.9 9.3 100 157-260 179-296 (338)
184 3qwp_A SET and MYND domain-con 96.5 0.012 4.1E-07 53.6 9.9 94 164-257 294-400 (429)
185 1na3_A Designed protein CTPR2; 96.5 0.04 1.4E-06 37.0 10.5 63 157-221 9-71 (91)
186 2hr2_A Hypothetical protein; a 96.5 0.1 3.5E-06 40.7 13.7 109 125-236 15-150 (159)
187 2l6j_A TPR repeat-containing p 96.5 0.0069 2.3E-07 42.6 6.5 88 125-217 8-102 (111)
188 1klx_A Cysteine rich protein B 96.4 0.061 2.1E-06 40.4 11.7 110 135-257 9-126 (138)
189 3qww_A SET and MYND domain-con 96.3 0.016 5.4E-07 52.9 9.5 90 169-258 310-412 (433)
190 1na3_A Designed protein CTPR2; 96.3 0.081 2.8E-06 35.4 11.1 76 126-205 14-89 (91)
191 3ma5_A Tetratricopeptide repea 96.3 0.037 1.3E-06 38.8 9.3 63 156-220 6-68 (100)
192 3ma5_A Tetratricopeptide repea 96.2 0.025 8.5E-07 39.7 8.1 67 192-259 6-72 (100)
193 4g1t_A Interferon-induced prot 96.1 0.12 4.3E-06 46.1 14.4 136 124-261 54-208 (472)
194 3qwp_A SET and MYND domain-con 96.0 0.079 2.7E-06 48.1 12.6 98 123-220 289-398 (429)
195 3qww_A SET and MYND domain-con 95.7 0.081 2.8E-06 48.1 11.1 88 133-220 310-409 (433)
196 2kc7_A BFR218_protein; tetratr 95.3 0.047 1.6E-06 37.6 6.5 53 130-184 9-62 (99)
197 2r5s_A Uncharacterized protein 95.1 0.17 5.9E-06 39.0 9.8 78 138-220 91-171 (176)
198 1dce_A Protein (RAB geranylger 95.0 1.9 6.7E-05 40.3 18.3 119 137-260 89-224 (567)
199 2uy1_A Cleavage stimulation fa 94.8 0.51 1.7E-05 43.4 13.7 125 126-259 291-415 (493)
200 3dra_A Protein farnesyltransfe 94.8 0.51 1.7E-05 40.7 12.7 121 135-259 158-289 (306)
201 3mkq_A Coatomer beta'-subunit; 94.7 0.31 1.1E-05 46.8 12.3 100 131-253 662-761 (814)
202 3e4b_A ALGK; tetratricopeptide 94.6 1 3.6E-05 40.6 15.1 118 126-254 181-313 (452)
203 3dra_A Protein farnesyltransfe 94.1 2.6 8.8E-05 36.2 19.8 123 133-260 79-218 (306)
204 3q7a_A Farnesyltransferase alp 94.1 2.9 9.8E-05 36.7 18.6 122 134-260 101-240 (349)
205 2kc7_A BFR218_protein; tetratr 93.8 0.91 3.1E-05 30.7 10.3 58 163-222 6-64 (99)
206 1zu2_A Mitochondrial import re 93.6 0.23 7.7E-06 38.7 7.3 98 132-236 13-132 (158)
207 1pc2_A Mitochondria fission pr 93.1 1.3 4.5E-05 34.1 10.8 68 191-260 30-103 (152)
208 3ly7_A Transcriptional activat 93.0 1.9 6.5E-05 38.2 13.1 121 135-260 213-342 (372)
209 4f3v_A ESX-1 secretion system 92.8 1.3 4.3E-05 37.8 11.3 100 130-234 144-247 (282)
210 2ff4_A Probable regulatory pro 91.8 0.86 3E-05 40.5 9.6 72 159-232 173-249 (388)
211 2v5f_A Prolyl 4-hydroxylase su 91.5 1.7 5.7E-05 30.4 9.2 66 156-221 4-74 (104)
212 3e4b_A ALGK; tetratricopeptide 91.5 4.2 0.00014 36.5 13.9 120 126-256 146-279 (452)
213 3mkq_B Coatomer subunit alpha; 91.4 4.3 0.00015 31.9 13.8 102 129-253 13-114 (177)
214 3u64_A Protein TP_0956; tetrat 91.2 2.5 8.6E-05 36.2 11.2 108 137-258 179-299 (301)
215 2ff4_A Probable regulatory pro 91.1 2 6.9E-05 38.1 11.2 70 124-195 174-247 (388)
216 1klx_A Cysteine rich protein B 91.0 3.6 0.00012 30.2 12.0 86 131-224 35-128 (138)
217 1zu2_A Mitochondrial import re 90.8 0.52 1.8E-05 36.6 6.2 90 168-261 13-124 (158)
218 2v5f_A Prolyl 4-hydroxylase su 90.8 2.6 8.8E-05 29.4 9.6 72 119-193 3-79 (104)
219 3mkq_A Coatomer beta'-subunit; 90.2 2 6.7E-05 41.1 11.1 128 121-268 629-769 (814)
220 1dce_A Protein (RAB geranylger 88.3 11 0.00038 35.1 14.5 120 135-259 43-175 (567)
221 3dss_A Geranylgeranyl transfer 87.9 13 0.00043 32.3 14.0 121 136-261 125-271 (331)
222 1wy6_A Hypothetical protein ST 87.0 6.5 0.00022 29.9 9.4 63 160-224 94-156 (172)
223 1pc2_A Mitochondria fission pr 86.8 8.4 0.00029 29.5 10.4 85 137-227 14-103 (152)
224 3dss_A Geranylgeranyl transfer 86.8 15 0.00051 31.8 19.3 119 137-260 90-225 (331)
225 3q7a_A Farnesyltransferase alp 85.4 18 0.00062 31.5 15.1 120 135-259 68-198 (349)
226 1v54_E Cytochrome C oxidase po 84.7 5.7 0.00019 28.4 7.7 59 139-200 28-86 (109)
227 2uy1_A Cleavage stimulation fa 83.3 13 0.00044 33.9 11.9 90 160-253 289-379 (493)
228 1nzn_A CGI-135 protein, fissio 82.2 13 0.00044 27.4 10.1 70 191-261 33-107 (126)
229 1v54_E Cytochrome C oxidase po 80.9 13 0.00044 26.5 8.6 66 169-237 21-88 (109)
230 3bee_A Putative YFRE protein; 80.8 11 0.00038 25.7 10.9 64 156-221 5-71 (93)
231 3u64_A Protein TP_0956; tetrat 80.7 12 0.00042 31.9 9.8 110 156-270 153-286 (301)
232 2y69_E Cytochrome C oxidase su 79.0 10 0.00036 28.5 7.7 62 137-201 69-130 (152)
233 4fhn_B Nucleoporin NUP120; pro 77.0 16 0.00055 37.1 11.2 114 129-246 850-989 (1139)
234 3ly7_A Transcriptional activat 76.7 15 0.00053 32.3 9.6 75 154-233 274-348 (372)
235 2y69_E Cytochrome C oxidase su 76.1 19 0.00064 27.2 8.4 64 172-237 68-131 (152)
236 4h7y_A Dual specificity protei 71.4 32 0.0011 26.4 10.1 102 156-260 12-126 (161)
237 3bee_A Putative YFRE protein; 70.7 22 0.00075 24.2 10.6 47 137-186 25-72 (93)
238 4b4t_P 26S proteasome regulato 69.8 62 0.0021 29.0 16.1 100 160-259 140-249 (445)
239 3txn_A 26S proteasome regulato 69.8 46 0.0016 29.5 11.0 100 162-262 104-215 (394)
240 4b4t_R RPN7, 26S proteasome re 68.4 36 0.0012 30.3 10.3 59 126-184 136-195 (429)
241 3mkq_B Coatomer subunit alpha; 67.1 43 0.0015 26.1 9.4 95 166-267 14-121 (177)
242 4gns_B Protein CSD3, chitin bi 64.4 62 0.0021 31.3 11.5 124 126-254 253-397 (754)
243 4fhn_B Nucleoporin NUP120; pro 63.3 54 0.0018 33.2 11.5 121 126-254 817-964 (1139)
244 2nsz_A Programmed cell death p 62.4 43 0.0015 24.5 8.0 61 124-186 10-72 (129)
245 4b4t_R RPN7, 26S proteasome re 60.3 91 0.0031 27.6 11.7 101 159-261 133-241 (429)
246 2nsz_A Programmed cell death p 58.8 25 0.00086 25.8 6.2 67 159-227 9-77 (129)
247 2ion_A PDCD4, programmed cell 55.9 35 0.0012 25.8 6.7 62 123-186 11-74 (152)
248 1wy6_A Hypothetical protein ST 55.5 66 0.0022 24.4 14.4 81 169-256 73-153 (172)
249 4b4t_P 26S proteasome regulato 55.0 1.2E+02 0.004 27.1 11.5 28 157-184 56-83 (445)
250 2keb_A DNA polymerase subunit 54.7 33 0.0011 24.1 5.6 43 212-256 28-70 (101)
251 4b4t_O 26S proteasome regulato 54.5 1.1E+02 0.0038 26.8 12.4 56 129-184 84-154 (393)
252 1nzn_A CGI-135 protein, fissio 53.8 62 0.0021 23.7 10.4 82 136-221 16-102 (126)
253 2uwj_G Type III export protein 52.9 59 0.002 23.1 7.8 77 135-223 20-98 (115)
254 2p58_C Putative type III secre 51.9 61 0.0021 23.0 8.4 77 135-223 21-99 (116)
255 2b7e_A PRE-mRNA processing pro 50.3 10 0.00035 24.0 2.3 29 174-203 3-31 (59)
256 1zbp_A Hypothetical protein VP 50.0 53 0.0018 27.6 7.3 120 129-260 5-132 (273)
257 3ffl_A Anaphase-promoting comp 50.0 86 0.0029 24.2 8.4 60 124-183 23-89 (167)
258 2ion_A PDCD4, programmed cell 48.4 26 0.00088 26.6 4.8 67 159-227 11-79 (152)
259 2xdt_A Endoplasmic reticulum a 47.5 2.2E+02 0.0074 28.0 14.0 94 126-227 685-785 (897)
260 1zbp_A Hypothetical protein VP 47.3 53 0.0018 27.5 6.9 71 165-237 5-77 (273)
261 3hwk_A Methylcitrate synthase; 45.2 1.4E+02 0.0049 26.5 9.8 41 83-123 206-246 (414)
262 2c6x_A Citrate synthase 1; tri 41.7 1.8E+02 0.006 25.4 9.7 64 84-147 156-226 (363)
263 3o48_A Mitochondria fission 1 41.0 1.1E+02 0.0037 22.7 9.2 61 199-261 46-111 (134)
264 3o8j_A 2-methylcitrate synthas 39.6 2E+02 0.0069 25.4 10.4 38 85-122 195-232 (404)
265 3ffl_A Anaphase-promoting comp 37.6 1.4E+02 0.0047 23.0 7.6 101 152-253 13-147 (167)
266 2yru_A Steroid receptor RNA ac 37.2 1.2E+02 0.0039 21.9 7.7 40 216-255 49-88 (118)
267 2d2s_A Exocyst complex compone 36.3 1.7E+02 0.0058 23.7 9.3 95 123-221 20-119 (235)
268 4ets_A Ferric uptake regulatio 36.2 80 0.0027 23.9 6.0 71 138-209 14-85 (162)
269 1a59_A Citrate synthase; cold- 35.7 2.2E+02 0.0077 24.8 11.3 63 86-148 167-236 (378)
270 4fke_A Aminopeptidase N; zinc 35.7 3.3E+02 0.011 26.8 12.7 90 126-221 691-786 (909)
271 1jog_A Hypothetical protein HI 35.2 15 0.00053 27.6 1.6 46 174-220 55-103 (146)
272 2fu4_A Ferric uptake regulatio 33.4 97 0.0033 20.0 6.3 56 188-244 12-68 (83)
273 3tqg_A 2-methylcitrate synthas 33.4 2.5E+02 0.0084 24.6 12.7 41 83-123 164-204 (375)
274 1y8m_A FIS1; mitochondria, unk 32.8 1.5E+02 0.0053 22.1 11.6 71 190-261 36-110 (144)
275 1aj8_A Citrate synthase; hyper 32.8 2.1E+02 0.0073 24.9 8.8 41 84-124 162-202 (371)
276 4h7y_A Dual specificity protei 32.7 1.6E+02 0.0056 22.4 11.4 56 171-228 74-129 (161)
277 3eiq_C Programmed cell death p 31.4 1.6E+02 0.0055 25.6 7.8 68 158-227 218-287 (358)
278 4gns_B Protein CSD3, chitin bi 30.8 1.3E+02 0.0046 29.0 7.8 51 131-184 347-398 (754)
279 1o7x_A Citrate synthase; lyase 30.2 2.6E+02 0.0088 24.5 8.9 64 84-147 162-232 (377)
280 1vgp_A 373AA long hypothetical 30.0 2.8E+02 0.0095 24.2 10.6 65 83-147 158-229 (373)
281 2ifc_A Citrate synthase; oxalo 29.8 2.4E+02 0.0084 24.7 8.8 42 82-123 165-206 (385)
282 1vgm_A 378AA long hypothetical 29.8 2.6E+02 0.0089 24.4 8.9 65 83-147 162-233 (378)
283 3eyy_A Putative iron uptake re 29.3 1.7E+02 0.0058 21.5 6.9 54 152-208 14-67 (145)
284 2dod_A Transcription elongatio 29.0 38 0.0013 22.8 2.6 35 173-208 16-50 (82)
285 1oai_A Nuclear RNA export fact 28.3 46 0.0016 20.8 2.8 23 170-192 33-55 (59)
286 1iom_A Citrate synthase; open 28.1 3E+02 0.01 24.0 12.4 41 83-123 162-202 (377)
287 1ug3_A EIF4GI, eukaryotic prot 27.2 1.6E+02 0.0053 25.2 6.9 95 123-220 13-112 (339)
288 2yru_A Steroid receptor RNA ac 26.8 1.8E+02 0.0061 20.9 7.9 42 179-221 48-89 (118)
289 3eiq_C Programmed cell death p 26.0 2.7E+02 0.0093 24.1 8.3 68 123-193 219-288 (358)
290 3bu8_A Telomeric repeat-bindin 25.7 1.6E+02 0.0053 23.9 6.0 49 174-222 89-143 (235)
291 3us6_A Histidine-containing ph 24.1 2.3E+02 0.0077 21.1 8.9 53 208-261 70-126 (153)
292 1uzc_A Hypothetical protein FL 23.8 51 0.0018 21.5 2.4 36 172-208 13-48 (71)
293 2d2s_A Exocyst complex compone 23.3 2.9E+02 0.01 22.2 9.3 56 126-185 64-119 (235)
294 2xig_A Ferric uptake regulatio 23.0 2.3E+02 0.0078 20.8 7.3 45 163-208 32-76 (150)
295 2p58_C Putative type III secre 22.9 2.1E+02 0.0071 20.3 7.6 73 171-254 21-95 (116)
296 2o03_A Probable zinc uptake re 22.9 1.5E+02 0.0053 21.2 5.3 46 163-209 16-61 (131)
297 2uwj_G Type III export protein 22.8 2.1E+02 0.0071 20.3 6.6 74 171-255 20-95 (115)
298 2rg8_A Programmed cell death p 22.7 65 0.0022 24.6 3.3 60 123-184 12-72 (165)
299 2ibp_A Citrate synthase; disul 22.5 4E+02 0.014 23.5 9.6 64 84-147 193-263 (409)
300 3r88_A Anthranilate phosphorib 22.5 1.9E+02 0.0065 25.3 6.6 66 156-223 22-89 (377)
301 2fe3_A Peroxide operon regulat 22.4 2.3E+02 0.0078 20.6 7.2 55 152-208 17-71 (145)
302 2zu6_B Programmed cell death p 22.2 1.5E+02 0.0052 25.1 5.8 66 124-192 169-236 (307)
303 3t5v_B Nuclear mRNA export pro 21.9 2.3E+02 0.0078 25.5 7.2 67 194-260 177-253 (455)
304 2f6m_A Suppressor protein STP2 21.9 1.1E+02 0.0036 19.7 3.5 46 195-241 4-49 (65)
305 3l6a_A Eukaryotic translation 21.4 84 0.0029 27.4 4.1 66 124-191 15-81 (364)
306 1k1a_A B-cell lymphoma 3-encod 21.4 82 0.0028 24.3 3.8 121 126-252 11-137 (241)
307 2zu6_B Programmed cell death p 21.4 2.1E+02 0.0073 24.1 6.6 68 158-227 167-236 (307)
308 3mwm_A ZUR, putative metal upt 21.4 1.3E+02 0.0043 22.0 4.6 48 162-210 18-65 (139)
309 3eyy_A Putative iron uptake re 21.3 2.2E+02 0.0075 20.8 6.0 56 187-244 13-68 (145)
310 2xig_A Ferric uptake regulatio 20.5 2.6E+02 0.0089 20.5 6.8 56 188-244 22-77 (150)
311 4e2i_2 DNA polymerase alpha su 20.5 1.9E+02 0.0064 19.2 4.7 43 212-256 5-47 (78)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-29 Score=236.99 Aligned_cols=167 Identities=8% Similarity=0.039 Sum_probs=150.1
Q ss_pred hhhhccCCCCCcccccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHHHHHHHHHhcC---------CHH
Q 023910 68 VIEMRDRGQNRKPLQRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQN---------HCL 138 (275)
Q Consensus 68 ~i~~~~~~~~~~~l~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~~li~~~~~~g---------~~~ 138 (275)
+|+++++. +.+. +|++++++|.+.|. .|+..+|+.++ ++|++.+ .++
T Consensus 32 ~id~c~k~---------G~~~-~A~~lf~~M~~~Gv--~pd~~tyn~Li------------~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 32 KLDMCSKK---------GDVL-EALRLYDEARRNGV--QLSQYHYNVLL------------YVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp HHHHTTTS---------CCHH-HHHHHHHHHHHHTC--CCCHHHHHHHH------------HHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHhC---------CCHH-HHHHHHHHHHHcCC--CCCHhHHHHHH------------HHHHhCCchhhhhhcchHH
Confidence 56776543 3555 99999999999998 88888888765 4455544 478
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYEL 218 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 218 (275)
.|.++|++|.++ |+.||.+|||+||++|++.|++++|.++|++|+.. |+.||.+|||+||.+|++.|++++|.++|++
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999995 99999999999999999999999999999999975 9999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 219 MKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 219 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.+.|+.||..||++||++|++.|++++|.+++++|.+.-.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999876433
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=224.57 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC---------HHHHHHHHHHhHhcCCCCcCHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL---------FQHVEILYFYLKTENSLEPEIQG 195 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~---------~~~A~~lf~~M~~~~G~~pd~~t 195 (275)
..+|++||+.|++++|+++|++|+++ |+.||.+|||+||++|++.+. +++|.++|++|... |+.||.+|
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd~~t 107 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KVVPNEAT 107 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TCCCCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CCCCCHHH
Confidence 46689999999999999999999996 999999999999999998765 68999999999975 99999999
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=218.04 Aligned_cols=127 Identities=14% Similarity=0.249 Sum_probs=115.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKE--QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~--~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
.+.++|++||++|++++|.++|++|.+. .|+.||++|||+||+|||+.|++++|.++|++|+.. |+.||++|||+||
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHH
Confidence 6789999999999999999999888641 389999999999999999999999999999999875 9999999999999
Q ss_pred HHHHhCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 023910 201 KCLVGFKLR-DLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGII 250 (275)
Q Consensus 201 ~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 250 (275)
++||+.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++...++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999999988887655544433
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=189.18 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHh--cCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKT--ENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~--~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 233 (275)
-.+|||+||++||+.|++++|.++|++|.+ ..|+.||++|||+||+|||+.|++++|.++|++|++.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 468999999999999999999999988763 238999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHh
Q 023910 234 VINGLEAMEEV-AFSGIIRQDAFKYY 258 (275)
Q Consensus 234 li~~~~~~g~~-~~A~~l~~~m~~~~ 258 (275)
||++||+.|+. ++|.++|++|.+.-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 99999999985 78999999999763
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.46 E-value=5.2e-12 Score=118.76 Aligned_cols=130 Identities=4% Similarity=-0.080 Sum_probs=79.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.++..|.+.|++++|.++|++|.+. ...+..+|+.+..+|.+.|++++|.++|++|... .+.+..+|+.++.+|.+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 5555666666666666666666552 2335566666666666666666666666666532 23356666666666666
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 206 FKLRDLVVDCYELMKTV----GCEPD--RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~----g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.|++++|.++|++|.+. +..|+ ..+|+.+..+|.+.|++++|.++++++.+..|
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 66666666666666543 55665 56666666666666666666666666665544
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.42 E-value=1.8e-11 Score=115.05 Aligned_cols=135 Identities=8% Similarity=-0.028 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCcC--HHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEPE--IQGFNA 198 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~pd--~~tyn~ 198 (275)
+..+...|.+.|++++|.++|+++.+. ...+..+|+.+...|.+.|++++|+++|++|... .|..|+ ..+|+.
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 447889999999999999999999885 3457999999999999999999999999999742 156888 899999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+..+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+..|+-
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998654 4488999999999999999999999999999998874
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1e-08 Score=75.89 Aligned_cols=131 Identities=8% Similarity=-0.004 Sum_probs=112.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|++++|.++|+++.+. ...+..+|..+...|...|++++|..+|+++... .+.+...|..+...|.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 35567788899999999999999874 2447888999999999999999999999998754 3556788999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++++|..+++++.+.. +.+..++..+...+.+.|++++|.+.++++.+..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999998643 335778889999999999999999999999887664
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=2.4e-08 Score=88.85 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...|.+.|++++|.+.|+++.+. -..+..+|+.+...|.+.|++++|++.|+++... .+.+..+|+.+...|.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 36777888899999999999999874 2335778999999999999999999999998754 5678889999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++++|..+|+++.+. .+.+..+|..+...|.+.|++++|.+.++++.+..|.
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999998753 2345778999999999999999999999999887775
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.93 E-value=7.6e-08 Score=86.85 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=111.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
....+...+.+.|++++|.++|+++.+. ...+..+|+.+...|.+.|++++|++.|+++... .+.+..+|+.+...
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445566688999999999999999885 3557899999999999999999999999999753 35578999999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPD-RSSYRTV------------INGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.+.|++++|...|+++.+. .|+ ...+..+ ...|.+.|++++|.++++++.+..|.
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999843 343 3344444 78899999999999999999988776
No 10
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.92 E-value=1.9e-07 Score=75.63 Aligned_cols=133 Identities=4% Similarity=-0.157 Sum_probs=112.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhHhcCCCCc-CHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN-GLFQHVEILYFYLKTENSLEP-EIQGFNALL 200 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~-g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI 200 (275)
.+..+...|...|++++|.++|++..+. ...+..+|..+...|... |++++|...|+++.. .+..| +...|..+.
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~ 120 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKG 120 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHH
Confidence 3456777888999999999999999874 344788899999999999 999999999999875 23334 468889999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
..|.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+..|
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999988542 23577888999999999999999999999999888
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.89 E-value=3.4e-07 Score=79.24 Aligned_cols=143 Identities=9% Similarity=0.072 Sum_probs=115.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL---YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t---yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
+..+...|.+.|++++|.+.|+.+.+. .|+... ..++++.+...|++++|..+|+++... .+.+...|+.+-
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 346778889999999999999999885 355332 233455566679999999999999865 577899999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHhCCccchHHHHHHHh
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF-SGIIRQDAFKYYGDLEFLEEDEEDIA 272 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~-A~~l~~~m~~~~~~~~~~~e~~~~~~ 272 (275)
.+|.+.|++++|...|++..+.. +-|..++..++..+...|+.++ +.++++++.+..|+-.++..+.++..
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~ 279 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEN 279 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999977432 2266688899999999999976 67999999999999777766666554
No 12
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.89 E-value=1.9e-07 Score=73.04 Aligned_cols=132 Identities=8% Similarity=-0.039 Sum_probs=114.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|++++|.+.|++..+. ...+...|..+...|...|++++|.+.|++.... .+.+...+..+...|.
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHH
Confidence 45566778899999999999999885 3457889999999999999999999999998754 4567889999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+.|++++|..++++..+.. ..+...+..+...+.+.|++++|.+.+++..+..|+-
T Consensus 122 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999988543 3467889999999999999999999999999887764
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.86 E-value=1.6e-07 Score=84.69 Aligned_cols=131 Identities=8% Similarity=0.015 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHH------------HHHHHcCCCHHHHHHHHHHhHhcCCCCcC
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADM------------IQVFGTNGLFQHVEILYFYLKTENSLEPE 192 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~L------------i~~~~~~g~~~~A~~lf~~M~~~~G~~pd 192 (275)
..+...|.+.|++++|.+.|+++.+. ...+...+..+ ...|.+.|++++|+..|+++... .|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~ 289 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPS 289 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc
Confidence 35666677777777777777777663 12234444444 66777777777777777777642 344
Q ss_pred -----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 193 -----IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 193 -----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|.+.++++.+..|+-
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 4467777777777777777777777766431 2356777777777777777777777777777776663
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.84 E-value=1.7e-07 Score=77.83 Aligned_cols=152 Identities=9% Similarity=-0.063 Sum_probs=123.4
Q ss_pred CchHHHHHHHHhhh--cHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 023910 106 NPLDHVFNSKFRRL--LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYL 183 (275)
Q Consensus 106 ~~~~~~~~~~~~~l--~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M 183 (275)
......+...+... ....+..+...|.+.|++++|.+.|++..+. ...+...|..+...|...|++++|.+.|++.
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556666665432 1223457778889999999999999999884 2447889999999999999999999999998
Q ss_pred HhcCCCCc-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 184 KTENSLEP-EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 184 ~~~~G~~p-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.. .+..| +...|..+...|.+.|++++|..+|++..+.. +.+...+..+...+.+.|++++|.++++++.+..|..
T Consensus 132 ~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 132 SQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp TT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred Hh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 75 23445 66788999999999999999999999988543 2357889999999999999999999999998877753
No 15
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=3.7e-07 Score=81.02 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+...|++++|...|++..+. -..+..+|+.+...|.+.|++++|++.|+++... -+-+..+|+.+..+|.+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Confidence 3444555566666666666666553 1224677888888888888888888888887643 23346678888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|...|+++.+. .+.+..+|+.+...+.+.|++++|.++++++.+..|.
T Consensus 284 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred cCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 88888888888888754 3456778888888888888888888888887766554
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.79 E-value=4.7e-07 Score=78.35 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHH---HHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGF---NALLKC 202 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~ty---n~lI~~ 202 (275)
.+-..|...|++++|.+.|++ ..+...+..+...|.+.|++++|.+.|+++... .|+...+ .+.+..
T Consensus 106 ~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSL 175 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHH
Confidence 334667889999999999987 247889999999999999999999999999754 3654322 234455
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.+++..+..|.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55669999999999999965 4568889999999999999999999999998887665
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.79 E-value=6.6e-07 Score=72.32 Aligned_cols=136 Identities=8% Similarity=-0.139 Sum_probs=114.6
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 124 MIAVLRELLRQ-NHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 124 ~~~li~~~~~~-g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
+..+...+... |++++|.+.|+.+.+ .+..|+ ...|..+...|.+.|++++|+..|+++... .+.+...+..+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 155 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHH
Confidence 44677888899 999999999999987 333443 788999999999999999999999998754 3446889999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
.|.+.|++++|..++++..+..-..+...+..+...+...|+.+.|..+++.+.+.+|.-.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999988643224677888888889999999999999999988888753
No 18
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.78 E-value=3e-07 Score=71.78 Aligned_cols=130 Identities=9% Similarity=-0.068 Sum_probs=112.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...+...|++++|.+.|+++.+. ...+..+|..+...|...|++++|...|++.... .+.+...|..+...|..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 4556677889999999999998763 3457889999999999999999999999998754 35578899999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|..+|++..+. .+.+...+..+...+.+.|++++|.++++++.+..|.
T Consensus 89 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 99999999999998854 2346788899999999999999999999999887665
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.77 E-value=5.8e-07 Score=73.79 Aligned_cols=132 Identities=9% Similarity=-0.061 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...|...|++++|.+.|++..+. ...+...|..+...|.+.|++++|+..|++.... .+.+...+..+...|.
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 35566778899999999999999885 3457888999999999999999999999998754 3457889999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+.|++++|...|++..+.. ..+..++..+...|.+.|++++|.+.++++.+..|+-
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 9999999999999987542 3357789999999999999999999999999888874
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.76 E-value=7e-07 Score=74.05 Aligned_cols=134 Identities=9% Similarity=-0.086 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
..+...|...|++++|.++|++..+ .+..| +...|..+...|.+.|++++|...|++.... .+.+...+..+...|
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHH
Confidence 3566778889999999999999977 23455 5678899999999999999999999998754 344688999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
.+.|++++|..+|++..+. ...+...+..+...+.+.|+.++|.++++++.+.+|+-.
T Consensus 186 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999998754 235677888999999999999999999999999988753
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.71 E-value=1.2e-06 Score=71.86 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+.+.|++++|.+.|++..+. ...+..+|..+...|...|++++|.+.|++.... .+.+...|..+...|.
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 35566778899999999999999885 3447889999999999999999999999998754 4557888999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++++|..++++..+.. ..+...+..+...+.+.|++++|.+.++++.+..|.
T Consensus 137 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999988542 236778899999999999999999999998887665
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.71 E-value=4.2e-07 Score=79.54 Aligned_cols=131 Identities=11% Similarity=-0.038 Sum_probs=111.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
+..+...|++++|...|+++.+...-.++..+|+.+...|.+.|++++|+..|++.... .+.+..+|+.+...|.+.|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcC
Confidence 44455889999999999999885222225899999999999999999999999998753 3456889999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
++++|...|++..+.. +.+..+|..+...|.+.|++++|.+.++++.+..|+.
T Consensus 266 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 266 QSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999988542 3467889999999999999999999999999887764
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.71 E-value=2.2e-07 Score=81.77 Aligned_cols=130 Identities=9% Similarity=-0.071 Sum_probs=109.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC
Q 023910 128 LRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 128 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g 207 (275)
...+.+.|++++|.++|+++.+...-.++..+|+.+...|.+.|++++|++.|++.... .+.+..+|+.+..+|.+.|
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 56777889999999999999885322236899999999999999999999999998754 4557899999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 208 LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
++++|...|++..+.. +-+..+|..+...|.+.|++++|.+.++++.+..|+
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999988642 234788999999999999999999999999988876
No 24
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.63 E-value=1.4e-06 Score=72.78 Aligned_cols=154 Identities=7% Similarity=-0.128 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc
Q 023910 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT 169 (275)
Q Consensus 90 ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~ 169 (275)
+|+..++.+........|.. ...+..+...+...|++++|.+.|++..+. ...+..+|..+...|..
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 23 VILARMEQILASRALTDDER-----------AQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 78888877776533111111 112335566788899999999999999885 24468999999999999
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 023910 170 NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGI 249 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~ 249 (275)
.|++++|++.|++.... .+.+...|..+...|.+.|++++|...|+++.+. .|+...+..++..+...|++++|..
T Consensus 90 ~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999998753 3446789999999999999999999999999863 4555556666666778899999999
Q ss_pred HHHHHHHHhCC
Q 023910 250 IRQDAFKYYGD 260 (275)
Q Consensus 250 l~~~m~~~~~~ 260 (275)
.+++.....+.
T Consensus 166 ~~~~~~~~~~~ 176 (275)
T 1xnf_A 166 VLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHhcCCc
Confidence 99888776554
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.62 E-value=4.6e-07 Score=77.62 Aligned_cols=132 Identities=8% Similarity=-0.056 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...|.+.|++++|.+.|++..+. ...+..+|..+...|.+.|++++|...|++.... .+.+..+|..+...|.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 35666777888888888888888774 2345778888888888888888888888887643 3446778888888888
Q ss_pred hCCChhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEP-----------DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~p-----------d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++++|...|++..+..-.. +..+|..+..++.+.|+.++|.+++++..+.+++
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 8888888888888876422111 4667888888888888888888888776655554
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.61 E-value=1.1e-05 Score=68.93 Aligned_cols=132 Identities=11% Similarity=-0.103 Sum_probs=110.1
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 124 MIAVLRELLRQN-HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 124 ~~~li~~~~~~g-~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
+..+-..+...| ++++|.+.|+...+. ...+...|..+...|...|++++|+..|++.... .+.+...+..+...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHH
Confidence 345667778889 999999999999774 2345788999999999999999999999998754 33456778889999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+..++
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 999999999999999988543 346788999999999999999999999999887643
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.61 E-value=1.4e-06 Score=76.51 Aligned_cols=151 Identities=8% Similarity=-0.106 Sum_probs=105.8
Q ss_pred chHHHHHHHHhhhc--HHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 107 PLDHVFNSKFRRLL--KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 107 ~~~~~~~~~~~~l~--~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
.....|...+..-. ...+..+...|.+.|++++|.+.|++..+. ...+..+|+.+...|.+.|++++|+..|+++.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 34455655554221 124557888899999999999999999884 24468999999999999999999999999987
Q ss_pred hcC----CC-------------------------------------Cc---CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 185 TEN----SL-------------------------------------EP---EIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 185 ~~~----G~-------------------------------------~p---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
... .. .| +..+|+.+...|.+.|++++|..+|++..
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 240 (365)
T 4eqf_A 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL 240 (365)
T ss_dssp HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 531 00 01 45666666667777777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 221 TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 221 ~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.. +.+..+|+.+...|.+.|++++|.+.++++.+..|.
T Consensus 241 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 241 TVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 431 235666677777777777777777777777666665
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.60 E-value=5.3e-06 Score=72.46 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=109.0
Q ss_pred hHHHHHHHHhhh--cHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 023910 108 LDHVFNSKFRRL--LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185 (275)
Q Consensus 108 ~~~~~~~~~~~l--~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~ 185 (275)
....|...+..- ....+..+...|.+.|++++|.+.|++..+. ...+..+|..+...|...|++++|++.|+++..
T Consensus 83 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554321 1123457778888999999999999999884 244788999999999999999999999999875
Q ss_pred cCCC----------------------------------------------Cc---CHHHHHHHHHHHHhCCChhHHHHHH
Q 023910 186 ENSL----------------------------------------------EP---EIQGFNALLKCLVGFKLRDLVVDCY 216 (275)
Q Consensus 186 ~~G~----------------------------------------------~p---d~~tyn~lI~~~~~~g~~~~A~~l~ 216 (275)
...- .| +..+|+.+...|.+.|++++|...|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3100 11 4667777777788888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 217 ELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 217 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
++..+.. +.+..+|..+...+.+.|++++|.+.++++.+..|.
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7776532 335677777778888888888888888887777665
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.60 E-value=1.8e-06 Score=73.90 Aligned_cols=131 Identities=5% Similarity=-0.153 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+...+...|++++|.+.|++..+. ...+..++..+...|...|++++|.+.|++.... .+.+...++.+...|.+
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 4455555666666666666666553 1223455555666666666666666666666532 34445666666666666
Q ss_pred CCChhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVG--------CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g--------~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|...|++..+.. ...+..+|..+...+.+.|++++|.+.+++..+..|+
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 666666666666655310 1223456666666666666666666666666655544
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.58 E-value=2.7e-06 Score=69.97 Aligned_cols=129 Identities=8% Similarity=-0.103 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHhHhcCCCCcCHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN-----------GLFQHVEILYFYLKTENSLEPEIQ 194 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~-----------g~~~~A~~lf~~M~~~~G~~pd~~ 194 (275)
.+-..+.+.|++++|...|++..+. -+.+...|..+-..|.+. |++++|+..|++.... -+-+..
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~ 119 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAP 119 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHH
Confidence 3445667889999999999998874 233577888888889988 9999999999988643 233567
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|..+-..|...|++++|...|++..+.. .+...+..+-..|...|++++|...+++..+..|.
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888999999999999999988766 67888889999999999999999999998888775
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.8e-06 Score=69.25 Aligned_cols=130 Identities=8% Similarity=-0.041 Sum_probs=105.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCC-----------------------CCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQW-----------------------YKP-QVSLYADMIQVFGTNGLFQHVEILYF 181 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g-----------------------~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~ 181 (275)
.+...|.+.|++++|.+.|++..+... ..| +...|..+...|...|++++|+..|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 445566667777777777776655210 122 45678889999999999999999999
Q ss_pred HhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 182 YLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 182 ~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
+.... .+.+..+|..+...|.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.+++..+..
T Consensus 164 ~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 164 EMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 98754 35578899999999999999999999999988643 3357789999999999999999999999999988
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.54 E-value=1.7e-06 Score=73.97 Aligned_cols=125 Identities=9% Similarity=-0.023 Sum_probs=109.9
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
+...|++++|.+.|++..+. ...+..++..+...|.+.|++++|.+.|++.... .+.+..+|..+...|.+.|+++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence 66778899999999999885 3447899999999999999999999999998754 3456889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+|...|++..+.. +.+..+|..+...+.+.|++++|.+.++++.+..|.
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9999999987542 336778999999999999999999999999998887
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.52 E-value=1e-05 Score=63.91 Aligned_cols=131 Identities=8% Similarity=-0.115 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+-..|.+.|++++|...+...... ...+...+..+-..+...++++.|...+.+.... .+-+...+..+-..|.
T Consensus 43 ~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 43 LKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 34556778899999999999999874 3446778888888999999999999999988753 3556788999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|++++|.+.+++.++..|+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 9999999999999987542 236678899999999999999999999999887664
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.51 E-value=2.5e-05 Score=67.32 Aligned_cols=131 Identities=7% Similarity=-0.050 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|++++|.++|++..+. ...+...|..+...|...|++++|+..|++.... .+.+..+|..+...|.
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34567888999999999999999885 3457889999999999999999999999999753 4567899999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYR------------TVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~------------~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++++|...|++..+.. +.+...+. .+...+.+.|++++|.+.++++.+..|+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999988532 11222222 2366689999999999999999988776
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.51 E-value=1.9e-06 Score=72.02 Aligned_cols=126 Identities=10% Similarity=-0.100 Sum_probs=106.6
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKP--QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p--~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
..|++++|...|+++.+.....+ +..+|..+...|...|++++|...|++.... .+.+..+|..+...|.+.|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 35789999999999987411111 4788999999999999999999999998754 3457899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+|...|++..+.. +.+...|..+...|.+.|++++|.+.++++.+..|..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 9999999998642 2256789999999999999999999999999988764
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.51 E-value=1.5e-05 Score=62.81 Aligned_cols=132 Identities=8% Similarity=-0.020 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+=..|.+.|++++|.+.|++..+. -+-+..+|..+-..|.+.|++++|+..+...... ..-+...+..+-..+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHH
Confidence 345556777889999999999999884 2346889999999999999999999999998754 345677788888889
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
...++++.|...+.+..+.. +-+...+..+-..|.+.|++++|.+.+++..+..|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 99999999999999887532 235678889999999999999999999999888765
No 37
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=7.6e-06 Score=62.90 Aligned_cols=133 Identities=8% Similarity=-0.021 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+-..+...|++++|...|++..+. ...+..+|..+-..|...|++++|+..|++.... .+.+...|..+-..|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 345566777899999999999999874 2447889999999999999999999999998753 345678899999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSY--RTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+.|++++|...|++..+..- -+...+ -.+...+.+.|++++|.+.+......+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 999999999999999885421 133344 444455778899999999999888776554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.3e-06 Score=69.59 Aligned_cols=153 Identities=10% Similarity=-0.013 Sum_probs=115.1
Q ss_pred hHHHHHHHHhhhc-HHhHHHHHHHHHhcCCHHHHHHHHHHhHHcC-CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHH
Q 023910 108 LDHVFNSKFRRLL-KFDMIAVLRELLRQNHCLLALKVFEDIRKEQ-WYKPQ----VSLYADMIQVFGTNGLFQHVEILYF 181 (275)
Q Consensus 108 ~~~~~~~~~~~l~-~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~-g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~ 181 (275)
....|...+.... ...+..+...|...|++++|.+.|+...+.. ...|+ ..+|..+...|.+.|++++|...|+
T Consensus 24 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 103 (258)
T 3uq3_A 24 AIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103 (258)
T ss_dssp HHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3455555544331 1234567778888999999999999887631 11122 5889999999999999999999999
Q ss_pred HhHhcC------------------------CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 182 YLKTEN------------------------SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 182 ~M~~~~------------------------G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
+..... -.+.+...|..+...|.+.|++++|...|++..+.. +.+..+|..+...
T Consensus 104 ~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 987521 022345678888888999999999999999987542 3367788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 238 LEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|.+.|++++|.+.+++..+..|..
T Consensus 183 ~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 183 LAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCHHHHHHHHHHHHHhCHHH
Confidence 999999999999999999888763
No 39
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.46 E-value=2.2e-06 Score=72.76 Aligned_cols=137 Identities=9% Similarity=0.028 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcC-----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc--C---CCCc-
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQ-----WY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE--N---SLEP- 191 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~-----g~-~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~--~---G~~p- 191 (275)
+..+...|...|++++|.+.|++..+.. +- .....+|+.+-..|...|++++|++.|++.... . +-.|
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3456677888999999999999987631 11 224577888999999999999999999987642 0 1133
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC------------------------------------------------C
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTV------------------------------------------------G 223 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------------------------------------------------g 223 (275)
...+++.+...|.+.|++++|..+|++..+. .
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 3468899999999999999999999988742 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 224 CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 224 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-..+..+|..+...|.+.|++++|.+++++..+..++
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1234567889999999999999999999999887654
No 40
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.45 E-value=1.8e-05 Score=63.84 Aligned_cols=129 Identities=8% Similarity=-0.121 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+...|++++|.+.|++. +.|+...|..+-..|.+.|++++|+..|++.... .+.+...|..+-.+|.+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 4455677899999999999876 3568899999999999999999999999998754 35577899999999999
Q ss_pred CCChhHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 206 FKLRDLVVDCYELMKTVG--------------CEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g--------------~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.|++++|...|+...+.. ..| +...+..+-..|.+.|++++|.+.++...+..|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999988532 222 23677888899999999999999999999988864
No 41
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=7.9e-06 Score=59.21 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
..+|..+...|...|++++|.++|+++... .+.+..++..+...|.+.|++++|..+|+++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 344555555555555555555555555432 22344555555555555566666655555555321 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.+.|++++|.+.++++.+..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC
Confidence 555666666666666555555443
No 42
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.43 E-value=7.1e-08 Score=88.25 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|..+|..+ ..|+.|..++++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~ 160 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVH 160 (449)
T ss_dssp ----------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHH
Confidence 55667777777776666653 245567777777777777777777777665 147777777777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----------HHHHHhCCccchHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQ----------DAFKYYGDLEFLEED 267 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~----------~m~~~~~~~~~~~e~ 267 (275)
.|++++|.+.+..+ -+..||..++.+|+..|+++.|..... ++.+.|-+.|..+|.
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHH
Confidence 77777777777766 266788888888888888888764332 344455555555554
No 43
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.42 E-value=5.5e-06 Score=60.70 Aligned_cols=99 Identities=8% Similarity=-0.005 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
.|+.+...|...|++++|..+|+++... .+.+...|..+...+...|++++|..+|+++.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 5788899999999999999999999754 34578889999999999999999999999998643 34677888999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhCC
Q 023910 239 EAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 239 ~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
...|++++|.++++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999887765
No 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.42 E-value=1.5e-05 Score=68.66 Aligned_cols=132 Identities=8% Similarity=-0.015 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC----CHHHHHHH------------HHHHHcCCCHHHHHHHHHHhHhcC
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKP----QVSLYADM------------IQVFGTNGLFQHVEILYFYLKTEN 187 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p----~~~tyn~L------------i~~~~~~g~~~~A~~lf~~M~~~~ 187 (275)
+..+...+.+.|++++|.+.|++..+. .| +...+..+ ...+...|++++|++.|++....
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 149 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV- 149 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence 345667778889999999999999773 45 44555554 57889999999999999998754
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 188 G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+.+...+..+-..|.+.|++++|...+++..+.. +.+..++..+...+...|++++|.+.+++..+..|..
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 150 -CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred -CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 45678899999999999999999999999998642 4477889999999999999999999999999887764
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=2.1e-05 Score=56.92 Aligned_cols=110 Identities=7% Similarity=0.022 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+...+.+.|++++|.++|+++.+. ...+..+|..+...|.+.|++++|...|+++... .+.+..++..+...|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 345567788899999999999999885 2457889999999999999999999999998754 355788999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
.+.|++++|...|+++.+.. +-+...+..+-..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 99999999999999987542 12334444444443
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.39 E-value=5.8e-07 Score=82.22 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+..+.+.|...|++++|...|..+. .|+.|.+++.+.|++++|++.+.++ . ++.||..++.+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~~L~~Lg~yq~AVea~~KA--~-----~~~~Wk~v~~a 186 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA--N-----STRTWKEVCFA 186 (449)
T ss_dssp -------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH--T-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHHHHHHhccHHHHHHHHHHc--C-----CchhHHHHHHH
Confidence 45688889999999999999999871 4999999999999999999999887 1 78999999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-ccchHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD-LEFLEEDE 268 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~e~~ 268 (275)
|+..|+++.|......+ .+.|+ ....++..|.+.|++++|..+++.....-+. ++++.|+-
T Consensus 187 Cv~~~ef~lA~~~~l~L---~~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHI---VVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp HHHTTCHHHHHHTTTTT---TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHH---HhCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999996554432 23444 4557889999999999999999987655544 35555553
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.1e-05 Score=73.45 Aligned_cols=130 Identities=8% Similarity=-0.092 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|++++|..+|++..+. .|+..+|..+...|...|++++|...|++.... .+.+...|..+...|.
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHH
Confidence 35566677788888888888888774 234777778888888888888888888877642 3446677777888888
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++++|...|++..+.. +.+...+..+...+.+.|++++|.++++++.+..|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 8888888888888776542 224556777777777788888888888777766554
No 48
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.36 E-value=5.1e-06 Score=69.19 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcC-----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc------CCCCcC
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQ-----WY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE------NSLEPE 192 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~-----g~-~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~------~G~~pd 192 (275)
..+-..|...|++++|...|++..+.. +- .....+|+.+-..|...|++++|++.|++.... ......
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 126 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 345667788999999999999887631 11 224678999999999999999999999987642 111334
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 193 IQGFNALLKCLVGFKLRDLVVDCYELMKTV------GCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 193 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
..+|..+-..|...|++++|..+|++..+. +-.| +..++..+...|.+.|++++|.+++++..+..+
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999998753 2233 456888999999999999999999999988744
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.36 E-value=6.2e-06 Score=69.93 Aligned_cols=137 Identities=9% Similarity=0.013 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHc------CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-----CC-Cc
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKE------QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-----SL-EP 191 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~------~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-----G~-~p 191 (275)
+..+-..|...|++++|...|++..+. ........+|+.+...|...|++++|.+.|++..... +- ..
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 345667788899999999999988663 1112246788999999999999999999999876421 12 33
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTV------GCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
....++.+-..|...|++++|.++|++..+. +-.| ...++..+...|.+.|++++|.++++++.+..++
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999998743 2233 3457888999999999999999999999876543
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.34 E-value=5.9e-06 Score=68.83 Aligned_cols=134 Identities=10% Similarity=-0.002 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcC-----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc----C-CCCc-
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQ-----W-YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE----N-SLEP- 191 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~-----g-~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~----~-G~~p- 191 (275)
+..+-..|...|++++|.+.|++..+.. . -.....+|..+-..|...|++++|+..|++.... . +-.|
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3456677888999999999999886630 1 1224678899999999999999999999987642 0 1133
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC------------------------------------------------C
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTV------------------------------------------------G 223 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------------------------------------------------g 223 (275)
+..++..+-..|.+.|++++|..+|++..+. .
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999988742 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 224 CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 224 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
...+..++..+...|.+.|++++|.+++++..+.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1223457888999999999999999999987754
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.32 E-value=1.8e-05 Score=72.76 Aligned_cols=127 Identities=8% Similarity=-0.137 Sum_probs=64.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
..|...|++++|.+.|++..+. ...+..+|..+...|...|++++|+..|++.... .+-+...|..+...|.+.|+
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3344445555555555555442 1223455555555555555555555555555432 12233455555555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 209 ~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+++|..+|++..+.. +.+...|..+...+.+.|++++|.+.++++.+..|.
T Consensus 360 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 360 FTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 555555555554321 123345555555555555555555555555555443
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.32 E-value=2.5e-05 Score=67.43 Aligned_cols=132 Identities=10% Similarity=0.041 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVF-GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~-~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
..+...+.+.|++++|.++|++..+. ..++...|....... ...|+.++|..+|+...+. .+-+...|..++..+
T Consensus 138 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 138 IQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 35556667788899999999988773 123444554443332 2368999999999887653 334678899999999
Q ss_pred HhCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVG-CEP--DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g-~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|..+|+...+.. +.| +...|..++..+.+.|+.+.|..+++++.+.+|+
T Consensus 214 ~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999999999998763 565 4668888899999999999999999999999997
No 53
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.31 E-value=9.3e-06 Score=74.00 Aligned_cols=132 Identities=7% Similarity=-0.029 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC----HHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE----IQGFNALLK 201 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd----~~tyn~lI~ 201 (275)
.+...|.+.|++++|..+|++..+. ...+..+|..+...|.+.|++++|...|+++.....-.|+ ...|..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 4455555667777777777776653 2234566666777777777777777777666432111112 336777777
Q ss_pred HHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 202 CLVG---FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 202 ~~~~---~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|.+ .|++++|...|+...+.. +.+..++..+...|.+.|++++|.+.+++..+..|+
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 7777 777777777777766432 224556667777777777777777777777776665
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.30 E-value=3.5e-05 Score=63.01 Aligned_cols=130 Identities=5% Similarity=-0.084 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
..-..+.+.|++++|...|++..+. .-.++...|..+-..|.+.|++++|++.|++.... -+-+...|..+-..|.+
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHH
Confidence 4445677889999999999999884 22268888888999999999999999999998743 23356788999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPD-R-------SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd-~-------~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|...|++..+. .|+ . ..|..+-..+.+.|++++|.+.+++..+..|.
T Consensus 89 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred cccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99999999999988753 233 3 45777888888999999999999998877665
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.29 E-value=1.2e-05 Score=73.94 Aligned_cols=131 Identities=7% Similarity=-0.076 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+-..+...|++++|.+.|++..+. .|+..+|..+-..|...|++++|...|++.... .+.+..+|..+...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Confidence 345566788899999999999999884 567889999999999999999999999998754 345688999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|...|++..+.. +-+...|..+...+.+.|++++|.++++++.+..|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999998543 224578899999999999999999999999988776
No 56
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=2e-05 Score=61.85 Aligned_cols=124 Identities=7% Similarity=-0.035 Sum_probs=91.9
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH-HHhCCCh--
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC-LVGFKLR-- 209 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~-~~~~g~~-- 209 (275)
..|++++|...|+...+. ...+...|..+-..|...|++++|+..|++.... .+.+...|..+-.+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 457778888888887664 2346788888888898999999999999887643 23366777777777 7788888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 210 DLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 210 ~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
++|...|++..+.. +-+...+..+...|...|++++|.+.+++..+..|.-
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999988887542 2245677788888889999999999999988888764
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.24 E-value=1.7e-05 Score=73.30 Aligned_cols=132 Identities=7% Similarity=-0.118 Sum_probs=111.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHhHhcCCCCcCHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN---------GLFQHVEILYFYLKTENSLEPEIQG 195 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~---------g~~~~A~~lf~~M~~~~G~~pd~~t 195 (275)
..+-..|.+.|++++|.+.|++..+ ..|+...|..+-..|... |++++|++.|++.... -+-+...
T Consensus 141 ~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 215 (474)
T 4abn_A 141 NQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRS 215 (474)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHH
Confidence 3556677888999999999999977 368889999999999999 9999999999998753 3446788
Q ss_pred HHHHHHHHHhC--------CChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 196 FNALLKCLVGF--------KLRDLVVDCYELMKTVGC--EPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 196 yn~lI~~~~~~--------g~~~~A~~l~~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|..+-.+|... |++++|...|++..+..- .-+...|..+-..|.+.|++++|.+.+++..+..|..
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999988 999999999999885421 1378889999999999999999999999998887763
No 58
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.24 E-value=4.5e-05 Score=66.61 Aligned_cols=147 Identities=9% Similarity=-0.045 Sum_probs=109.5
Q ss_pred hHHHHHHHHhhh--cHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 108 LDHVFNSKFRRL--LKFDMIAVLRELLRQNHCLLALKVFEDIRKEQWY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 108 ~~~~~~~~~~~l--~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~-~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
....+..++..- .......+-..+...|+.++|++++.+-... |- .-+...+-.++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555554321 1223345667788899999999999987553 21 1267888889999999999999999999997
Q ss_pred hcCCCCc-----CHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 185 TENSLEP-----EIQGFNALLKCLVG----FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 185 ~~~G~~p-----d~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
. ..| +..+...|..++.. .++..+|+.+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 467 36666667766333 34999999999999754 3665566677779999999999999999988
Q ss_pred HHhCC
Q 023910 256 KYYGD 260 (275)
Q Consensus 256 ~~~~~ 260 (275)
+.||+
T Consensus 239 ~~~p~ 243 (310)
T 3mv2_B 239 SDYYS 243 (310)
T ss_dssp SHHHH
T ss_pred Hhccc
Confidence 88754
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.24 E-value=6e-05 Score=61.70 Aligned_cols=127 Identities=13% Similarity=-0.011 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|++++|...|++..+. -..+...|..+-..|.+.|++++|+..|++.... -+-+...|..+-..|.+
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 4455677899999999999999874 2446888999999999999999999999998753 24467889999999999
Q ss_pred C-----------CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 206 F-----------KLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 206 ~-----------g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
. |++++|...|++..+. .| +...|..+-..|...|++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 9 9999999999998753 34 56788888999999999999999999987764
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.24 E-value=6.1e-05 Score=73.40 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
+..+-..|.+.|++++|.+.|++..+. .| +...|+.|-..|.+.|++++|++.|++..+. -+-+...|+.+-.+
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASI 120 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 345566666777777777777777663 33 4667777777777777777777777766532 12245677777777
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.+.|++++|...|++..+. .| +...|..+...|...|++++|.+.+++..+..++
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 77777777777777776542 23 3556677777777777777777777777666554
No 61
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.23 E-value=9.3e-05 Score=63.29 Aligned_cols=135 Identities=10% Similarity=-0.069 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC----HHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQV----SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE----IQGFN 197 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd----~~tyn 197 (275)
..+..+.+.|++++|.+++++..+.....|+. ..|..+...|...|++++|+..|++.....--.+| ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 45778889999999999999998743333442 24445777788888999999999998752111233 34799
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKT----V-GCEPDR-SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~----~-g~~pd~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+-..|...|++++|...|++..+ . +..+.. .+|..+...|.+.|++++|.+.+++.++..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998873 2 333333 37888999999999999999999998876543
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.21 E-value=7.7e-05 Score=62.11 Aligned_cols=130 Identities=8% Similarity=-0.079 Sum_probs=77.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
+...|.+.|++++|.+.|++..+. +-.|+ ..+|..+-..|.+.|++++|++.|++.... .+-+...|..+-..|.
T Consensus 43 l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 43 RAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHH
Confidence 344556667777777777776652 22222 334666777777777777777777766542 2334466777777777
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++++|...|++..+. -+-+...|..+-..+...+++++|.+.++++.+..|.
T Consensus 120 ~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 120 NKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 777777777777665543 1223444444442333445777777777776666554
No 63
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.20 E-value=2.9e-05 Score=64.77 Aligned_cols=131 Identities=9% Similarity=0.027 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~ 203 (275)
..-..+.+.|++++|..+|++..+. ...+...|..+...|.+.|++++|+..|++.... +-.|+ ...|..+-..|
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHH
Confidence 4456777899999999999999884 2234558888999999999999999999998752 32222 34589999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|...|+...+.. +-+..+|..+-..|...|++++|.+.+++..+..|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 99999999999999988532 224578999999999999999999999987766554
No 64
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.20 E-value=9.6e-05 Score=53.73 Aligned_cols=115 Identities=6% Similarity=-0.017 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|++++|...|++..+. ...+...|..+...|...|++++|++.|++.... .+.+...|..+-..|.
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHHH
Confidence 34556666788888888888888764 2346777888888888888888888888887643 3345677888888888
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 205 GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
+.|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888776432 12455666666666666553
No 65
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.20 E-value=3.9e-05 Score=67.03 Aligned_cols=141 Identities=11% Similarity=0.018 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-----CHHHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCcCHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKP-----QVSLYADMIQVFGT----NGLFQHVEILYFYLKTENSLEPEIQ 194 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-----~~~tyn~Li~~~~~----~g~~~~A~~lf~~M~~~~G~~pd~~ 194 (275)
+...+..+.+.|+.+.|.++++.|.+. .| +..+...|..++.. .++.++|..+|+++... .|+..
T Consensus 139 ~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~ 212 (310)
T 3mv2_B 139 LLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWK 212 (310)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcc
Confidence 346788899999999999999999874 56 35555666656332 34899999999999643 46655
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccchH
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTV-----GC---EP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFLE 265 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~---~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 265 (275)
+-..+++++.+.|++++|..+++.+.+. +- .| |..+...+|......|+ +|.++++++.+..|+--++.
T Consensus 213 ~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 213 TQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 5566666899999999999999977632 11 23 55566456655666776 89999999999999987777
Q ss_pred HHHHHHh
Q 023910 266 EDEEDIA 272 (275)
Q Consensus 266 e~~~~~~ 272 (275)
..+++.+
T Consensus 291 d~~~k~~ 297 (310)
T 3mv2_B 291 HHQEIDA 297 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.20 E-value=0.00017 Score=60.32 Aligned_cols=141 Identities=10% Similarity=0.019 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHc--------CCCHHHHHHHHHHhHhcCCCCcCHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGT--------NGLFQHVEILYFYLKTENSLEPEIQG 195 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~--------~g~~~~A~~lf~~M~~~~G~~pd~~t 195 (275)
..+-..|.+.|++++|...|+...+...-.|+ ...+..+-..|.+ .|++++|+..|++..... +-+...
T Consensus 56 ~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 133 (261)
T 3qky_A 56 FYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELV 133 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhH
Confidence 45556778899999999999999885222223 4567777788888 999999999999987542 212233
Q ss_pred H-----------------HHHHHHHHhCCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc----------CCHHH
Q 023910 196 F-----------------NALLKCLVGFKLRDLVVDCYELMKTVG-CEP-DRSSYRTVINGLEAM----------EEVAF 246 (275)
Q Consensus 196 y-----------------n~lI~~~~~~g~~~~A~~l~~~M~~~g-~~p-d~~ty~~li~~~~~~----------g~~~~ 246 (275)
. ..+-..|.+.|++++|...|++..+.. -.| ....+..+..+|.+. |++++
T Consensus 134 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 134 DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 3 455677899999999999999988532 112 345677777778766 89999
Q ss_pred HHHHHHHHHHHhCCccchHHH
Q 023910 247 SGIIRQDAFKYYGDLEFLEED 267 (275)
Q Consensus 247 A~~l~~~m~~~~~~~~~~~e~ 267 (275)
|.+.++++.+.+|+-....+.
T Consensus 214 A~~~~~~~~~~~p~~~~~~~a 234 (261)
T 3qky_A 214 AVELYERLLQIFPDSPLLRTA 234 (261)
T ss_dssp HHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHCCCChHHHHH
Confidence 999999999999986444433
No 67
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=7.6e-05 Score=54.41 Aligned_cols=92 Identities=8% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-CCCcC----HHHHHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPE----IQGFNALLK 201 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G~~pd----~~tyn~lI~ 201 (275)
+-..+...|++++|...|++..+. ...+...|..+-..|...|++++|...|++..... ...++ ..+|..+-.
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 334444455555555555554442 12234444444455555555555555554443210 00111 344444444
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~ 220 (275)
.|.+.|++++|...|+...
T Consensus 88 ~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 4444455555554444444
No 68
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=5.9e-05 Score=55.36 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 235 (275)
+...|..+-..|.+.|++++|+..|++.... .+.+...|..+-..|...|++++|...|++..+.. ..+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4566666666666677777777777666532 23355666666666666777777777766665421 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 236 NGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 236 ~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..+.+.|++++|.+.+++..+..|.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 6667777777777777766666554
No 69
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=0.0011 Score=55.36 Aligned_cols=121 Identities=9% Similarity=-0.055 Sum_probs=75.2
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCcCHHHHH
Q 023910 126 AVLRELLR----QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT----NGLFQHVEILYFYLKTENSLEPEIQGFN 197 (275)
Q Consensus 126 ~li~~~~~----~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~----~g~~~~A~~lf~~M~~~~G~~pd~~tyn 197 (275)
.+-..|.. .+++++|.+.|++..+. + +..++..|-..|.. .|++++|+..|++.... + +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 44445555 66667777766666653 2 56666666666666 66677777766666543 3 455555
Q ss_pred HHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 023910 198 ALLKCLVG----FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA----MEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 198 ~lI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~ 257 (275)
.+-..|.. .+++++|...|+...+.+ +...+..+-..|.+ .+++++|.+.++...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 66666665 666777777776666553 34555666666666 67777777777666554
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.11 E-value=0.00039 Score=58.00 Aligned_cols=137 Identities=11% Similarity=0.032 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-HHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-IQGFNALLKC 202 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-~~tyn~lI~~ 202 (275)
..+-..+.+.|++++|...|++..+...-.|. ...+..+-..|.+.|++++|+..|+.......-.|+ ...+..+-.+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 34455677899999999999999885211111 678888899999999999999999998754211222 4567777788
Q ss_pred HHh--------CCChhHHHHHHHHHHhCC-CCCCHH-HH--------------HHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 203 LVG--------FKLRDLVVDCYELMKTVG-CEPDRS-SY--------------RTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 203 ~~~--------~g~~~~A~~l~~~M~~~g-~~pd~~-ty--------------~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
|.+ .|++++|...|++..+.. -.+... .. ..+-..|.+.|++++|...++++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888 999999999999988432 222222 11 455777899999999999999999999
Q ss_pred CCc
Q 023910 259 GDL 261 (275)
Q Consensus 259 ~~~ 261 (275)
|+-
T Consensus 179 p~~ 181 (261)
T 3qky_A 179 PDT 181 (261)
T ss_dssp TTS
T ss_pred CCC
Confidence 874
No 71
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.10 E-value=7.7e-05 Score=58.09 Aligned_cols=108 Identities=9% Similarity=-0.032 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
...|..+-..|.+.|++++|+..|+..... -+-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 445666666777777777777777777643 23356677777777777777777777777776422 113456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCccchHHH
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGDLEFLEED 267 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~e~ 267 (275)
+|.+.|++++|.+.|+...+..|.-...+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777777777777777765433333
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.10 E-value=0.00016 Score=67.76 Aligned_cols=130 Identities=8% Similarity=-0.125 Sum_probs=110.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..|.+.|++++|.+.|++..+. -..+...|..+-..|.+.|++++|.+.|++.... -+-+...|..+-.+|.+
T Consensus 28 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 103 (568)
T 2vsy_A 28 MLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--APEHPGIALWLGHALED 103 (568)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 4455677889999999999999874 2346889999999999999999999999998753 34467899999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM---EEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~---g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+.+++..+..|+
T Consensus 104 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 999999999999987542 23567888999999999 9999999999999988776
No 73
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.09 E-value=0.00011 Score=53.36 Aligned_cols=103 Identities=9% Similarity=-0.103 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVI 235 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li 235 (275)
+...|..+...+...|++++|+..|++.... .+.+...|..+...|...|++++|...++...+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 4677888889999999999999999998754 34578899999999999999999999999988542 23577888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 236 NGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 236 ~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
..+.+.|++++|.+.+++..+..|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999988764
No 74
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=8.5e-05 Score=53.05 Aligned_cols=99 Identities=6% Similarity=-0.158 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGL 238 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~ 238 (275)
.|..+...+...|++++|...|++.... .+.+...+..+-..|.+.|++++|...+++..+.. +.+...+..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444444444555555555555544322 12234444444444555555555555554444321 11334444444555
Q ss_pred HhcCCHHHHHHHHHHHHHHhCC
Q 023910 239 EAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 239 ~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
...|++++|.+.+++..+..|.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhhHHHHHHHHHHHHHcCCC
Confidence 5555555555555554444443
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.06 E-value=0.00025 Score=57.77 Aligned_cols=129 Identities=6% Similarity=-0.180 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-------HHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-------QGFNA 198 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-------~tyn~ 198 (275)
+-..+.+.|++++|.+.|++..+. .| +...|..+-..|...|++++|+..|++.... .+-+. ..|..
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 445677889999999999999874 34 5678999999999999999999999998753 22234 45777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH---------------------------HHHH
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPD---RSSYRTVINGLEAMEEV---------------------------AFSG 248 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~ty~~li~~~~~~g~~---------------------------~~A~ 248 (275)
+=..+...|++++|...|++..+. .|+ ...|..+-..|...|+. ++|.
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 200 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV 200 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999998754 565 46777777888888877 8899
Q ss_pred HHHHHHHHHhCCcc
Q 023910 249 IIRQDAFKYYGDLE 262 (275)
Q Consensus 249 ~l~~~m~~~~~~~~ 262 (275)
..+++..+..|+-.
T Consensus 201 ~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 201 DYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHhhcCCCCH
Confidence 99999999988753
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.06 E-value=0.00018 Score=55.39 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
...+..+-..+.+.|++++|+..|+..... -+.+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 344455555566666666666666665432 23355555566666666666666666666655321 113345555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+|...|++++|.+.++...+..|.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 666666666666666666665554
No 77
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.05 E-value=0.00025 Score=52.65 Aligned_cols=103 Identities=8% Similarity=-0.066 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 023910 155 PQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTV 234 (275)
Q Consensus 155 p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 234 (275)
.+...|..+-..|.+.|++++|+..|+..... .+-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 36777888888888888888888888877643 23456778888888888888888888888777532 2256677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 235 INGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 235 i~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-..|...|++++|.+.+++..+..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888877765
No 78
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=0.00029 Score=52.68 Aligned_cols=102 Identities=10% Similarity=-0.066 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE----IQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSY 231 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 231 (275)
+...|..+-..+.+.|++++|+..|++... ..|+ ...|..+-..|.+.|++++|...+++..+.. ..+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 577788888888888888888888888763 3565 6778888888888888888888888876431 2256677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 232 RTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 232 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
..+-..+...|++++|.+.+++..+..|..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 788888888899999999998888887764
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=0.00018 Score=54.53 Aligned_cols=100 Identities=8% Similarity=-0.070 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
..+..+-..+.+.|++++|+..|+..... -+-+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 33444455566666666666666665532 23355556666666666666666666666665321 1133455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCC
Q 023910 238 LEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|...|++++|.+.++...+..|.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666666666666666666553
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.03 E-value=0.00011 Score=63.24 Aligned_cols=127 Identities=6% Similarity=-0.026 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-H-HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-V-SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~-~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
..+...+.+.|++++|.++|++..+. .|+ . ..|..+...+.+.|++++|..+|++.... .+++...|......
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 35566677899999999999999873 454 3 38999999999999999999999998743 23455556544443
Q ss_pred HH-hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 203 LV-GFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 203 ~~-~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
.. ..|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+...+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 32 3799999999999987431 225678899999999999999999999999884
No 81
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=7.6e-05 Score=52.88 Aligned_cols=102 Identities=15% Similarity=0.015 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC-EPDRSSYRTVI 235 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~li 235 (275)
...|..+-..|.+.|++++|...|++.... .+.+...|..+-..|.+.|++++|...|++..+..- ..+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 344556666677777777777777776543 233556667777777777777777777777664321 11456667777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHHhCC
Q 023910 236 NGLEAM-EEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 236 ~~~~~~-g~~~~A~~l~~~m~~~~~~ 260 (275)
..+.+. |++++|.+.+++..+..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777776665553
No 82
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.02 E-value=0.00021 Score=52.29 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+-..+.+.|++++|.+.|++..+. ...+...|..+-..|...|++++|+..|++.... .+.+...|..+-..|
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 345566778899999999999999774 2347889999999999999999999999998754 344678999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME 242 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g 242 (275)
.+.|++++|...|++..+..- -+...+..+-..+.+.|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 999999999999998875321 12344555555554443
No 83
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=0.00065 Score=56.86 Aligned_cols=140 Identities=6% Similarity=-0.086 Sum_probs=114.2
Q ss_pred chHHHHHHHHhhhcHHhHHHHHHHHHh----cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc----CCCHHHHHH
Q 023910 107 PLDHVFNSKFRRLLKFDMIAVLRELLR----QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT----NGLFQHVEI 178 (275)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~~li~~~~~----~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~----~g~~~~A~~ 178 (275)
.....|...+..-....+..+-..|.. .+++++|.+.|++..+. + +..++..|-..|.. .+++++|+.
T Consensus 24 ~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~ 99 (273)
T 1ouv_A 24 QAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLLGNLYYSGQGVSQNTNKALQ 99 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence 344556655553333345566677778 99999999999999884 4 78889999999999 999999999
Q ss_pred HHHHhHhcCCCCcCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 023910 179 LYFYLKTENSLEPEIQGFNALLKCLVG----FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA----MEEVAFSGII 250 (275)
Q Consensus 179 lf~~M~~~~G~~pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l 250 (275)
.|++.... + +...+..+-..|.. .|++++|...|++..+.+ +...+..+-..|.. .+++++|.+.
T Consensus 100 ~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 100 YYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99998754 3 78889999999999 999999999999998876 56677788888888 9999999999
Q ss_pred HHHHHHH
Q 023910 251 RQDAFKY 257 (275)
Q Consensus 251 ~~~m~~~ 257 (275)
+++..+.
T Consensus 173 ~~~a~~~ 179 (273)
T 1ouv_A 173 YDKACDL 179 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9998765
No 84
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.02 E-value=0.00021 Score=53.38 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
..|..+=+.|.+.|++++|++.|++.... -+-+...|..+-.+|.+.|++++|...|+...+.. +.+...|..+-.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 44555666677777777777777776532 23456677777777777777777777777766431 2245567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 238 LEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|...|++++|.+.|++..+..|+-
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCC
Confidence 777777777777777777777663
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.01 E-value=0.00017 Score=70.32 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKC 202 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~ 202 (275)
..+=..|.+.|++++|.+.|++..+. .| +..+|+.|-..|.+.|++++|++.|++..+- .| +...|+.+-.+
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34556778899999999999999884 34 5889999999999999999999999998643 34 57899999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|.+.|++++|.+.|++..+. .| +...|+.+-..|.+.|++++|.+.+++..+..|+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999988753 34 5678999999999999999999999999888765
No 86
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.01 E-value=0.00016 Score=61.87 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=106.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcC--CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhH---hcCCCCc--CHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQ--WYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLK---TENSLEP--EIQGFN 197 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~--g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~---~~~G~~p--d~~tyn 197 (275)
+...+...|++++|...|++..+.. ...+. ..+|+.+-..|...|++++|+..|++.. ...+-.+ +..+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4445667889999999999886521 11122 5589999999999999999999999875 2211122 226899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHhCCc---cchHHHH
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKT----VGCEPD-RSSYRTVINGLEAMEEVAFS-GIIRQDAFKYYGDL---EFLEEDE 268 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~----~g~~pd-~~ty~~li~~~~~~g~~~~A-~~l~~~m~~~~~~~---~~~~e~~ 268 (275)
.+-..|.+.|++++|...+++..+ .+.... ..+|..+-..|.+.|++++| ...+++....+... .+.++++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~ 280 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALV 280 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHH
Confidence 999999999999999999998752 222222 56888899999999999999 88888877665443 3555554
Q ss_pred HHH
Q 023910 269 EDI 271 (275)
Q Consensus 269 ~~~ 271 (275)
..+
T Consensus 281 ~~~ 283 (293)
T 2qfc_A 281 NKI 283 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 87
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.01 E-value=0.00015 Score=56.18 Aligned_cols=101 Identities=7% Similarity=-0.088 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
...|..+-..|.+.|++++|+..|++.... .+-+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344555555555556666666655555432 12245555555555556666666666655554321 113445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|.+.|++++|.+.+++..+..|+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 566666666666666665555554
No 88
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=8.6e-05 Score=55.95 Aligned_cols=137 Identities=9% Similarity=-0.084 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCc-CHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEP-EIQGF 196 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~p-d~~ty 196 (275)
..+-..+...|++++|...|++..+...-.++ ..+++.+-..|...|++++|.+.|++.... .+-.+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34555677889999999999887652100112 257888999999999999999999986531 11111 25678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 197 NALLKCLVGFKLRDLVVDCYELMKT----VGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 197 n~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
..+-..|...|++++|...+++..+ .+-.+ ....+..+-..+...|++++|.+.+++..+...+.
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999988762 23222 24567888889999999999999999998877654
No 89
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=0.00032 Score=51.46 Aligned_cols=93 Identities=9% Similarity=-0.044 Sum_probs=48.7
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCcCH---HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 023910 165 QVFGTNGLFQHVEILYFYLKTENSLEPEI---QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD----RSSYRTVING 237 (275)
Q Consensus 165 ~~~~~~g~~~~A~~lf~~M~~~~G~~pd~---~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~li~~ 237 (275)
..+.+.|++++|...|+...... +.+. ..+..+-.+|.+.|++++|...|+...+.. |+ ...+..+-.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 34445555666666555554321 1111 244455555555666666666665554321 21 3344555555
Q ss_pred HHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 238 LEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+.+.|++++|.+.+++..+.+|.-
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCC
Confidence 666666666666666666666654
No 90
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=0.00012 Score=53.32 Aligned_cols=103 Identities=10% Similarity=-0.105 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCC----HHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG--CEPD----RSS 230 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--~~pd----~~t 230 (275)
...|..+-..|...|++++|...|++.... .+.+...|..+-..|.+.|++++|...+++..+.. ..++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456888889999999999999999998754 35578889999999999999999999999987432 2233 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|..+...+.+.|++++|.+.+++..+..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 112 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCH
Confidence 8899999999999999999999999988764
No 91
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.97 E-value=0.0002 Score=64.32 Aligned_cols=166 Identities=7% Similarity=-0.091 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH---hHHHHHHHHHhcCC-HHHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 023910 90 EAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF---DMIAVLRELLRQNH-CLLALKVFEDIRKEQWYKPQVSLYADMIQ 165 (275)
Q Consensus 90 ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~---~~~~li~~~~~~g~-~~~A~~lf~~m~~~~g~~p~~~tyn~Li~ 165 (275)
++...+..+.............|+..+. +.+. .+..+-..|.+.|+ +++|+..|++..+. -.-+...|+.+-.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 3333333333333322344455555543 2222 23456667777886 99999999998884 2336788999999
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA-MEEV 244 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~-~g~~ 244 (275)
.|.+.|++++|+..|++.... -.-|...|+.+-.++.+.|++++|+..|+++.+..- -+...|+.+-..+.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999988753 244778899999999999999999999999885432 266788888888888 6666
Q ss_pred HHH-----HHHHHHHHHHhCCc
Q 023910 245 AFS-----GIIRQDAFKYYGDL 261 (275)
Q Consensus 245 ~~A-----~~l~~~m~~~~~~~ 261 (275)
++| .+.+++.++..|.-
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHHHHCCCC
Confidence 777 58888888888876
No 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.97 E-value=8.3e-05 Score=68.58 Aligned_cols=128 Identities=13% Similarity=-0.060 Sum_probs=110.0
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHC-LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 126 ~li~~~~~~g~~-~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
.+-..|...|++ ++|.+.|++..+. -.-+...|+.|-..|.+.|++++|++.|++... ..|+...|..+-..|.
T Consensus 107 ~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 107 LKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHH
Confidence 455566778999 9999999999884 233588999999999999999999999999873 5688899999999999
Q ss_pred hC---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHhC
Q 023910 205 GF---------KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM--------EEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 205 ~~---------g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~--------g~~~~A~~l~~~m~~~~~ 259 (275)
.. |++++|...|++..+.. +-+...|..+-.+|... |++++|.+.+++..+..|
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 99 99999999999988542 23577888999999988 999999999999998877
No 93
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=0.0003 Score=52.56 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCC----HHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTV--GCEPD----RSS 230 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~pd----~~t 230 (275)
..++.-|=+.|.+.|++++|++.|++...- -+-+...|+.+-.+|.+.|++++|+..|+...+. ...++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345555666666777777777777665532 2334566666666777777777777776665421 11112 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|..+-..+...|++++|.+.+++..+..+.-
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5556666777777777777777777766653
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.93 E-value=7.5e-05 Score=64.02 Aligned_cols=137 Identities=7% Similarity=-0.095 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcC-CCHHHHHHHHHHhHhc---CCCCcC-HH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTN-GLFQHVEILYFYLKTE---NSLEPE-IQ 194 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~-g~~~~A~~lf~~M~~~---~G~~pd-~~ 194 (275)
+..+-..|.+.|++++|...|++..+-..-..+ ..+|+.+-..|... |++++|+..|++-..- .|-.+. ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 345667788899999999999887652100012 46888999999996 9999999999986531 111111 46
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR------SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~------~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+|+.+-..|.+.|++++|...|++..+..-.... .+|..+..++...|++++|...+++..+..|.
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7899999999999999999999998864432221 25677888899999999999999998776665
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00043 Score=50.88 Aligned_cols=98 Identities=9% Similarity=-0.095 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
..|..+-..+.+.|++++|+..|++.... -+.+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34555555666666777777666665532 23355666666666666777777777666665421 1235566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHHh
Q 023910 238 LEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 238 ~~~~g~~~~A~~l~~~m~~~~ 258 (275)
+...|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 777777777777777766666
No 96
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.91 E-value=0.00076 Score=57.50 Aligned_cols=135 Identities=11% Similarity=-0.027 Sum_probs=104.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cC-CCCcCH-HHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT---EN-SLEPEI-QGFN 197 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~-G~~pd~-~tyn 197 (275)
+...+...|++++|...|++..+...-.++ ..+|+.|-..|...|++++|+..|++... .. +..+.. .+|+
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 445556678999999999999873111233 34799999999999999999999998763 11 223333 4889
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhCCc
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMK----TVGCEPD-RSSYRTVINGLEAMEE-VAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~----~~g~~pd-~~ty~~li~~~~~~g~-~~~A~~l~~~m~~~~~~~ 261 (275)
.+-..|.+.|++++|...+++.. +.+..+. ...|..+-..+.+.|+ +++|.+.+++....+...
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765 3443443 6788899999999995 699999999988776544
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.91 E-value=5.2e-05 Score=64.35 Aligned_cols=137 Identities=9% Similarity=-0.066 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCc-CHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEP-EIQGFN 197 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~p-d~~tyn 197 (275)
.+-..+...|++++|.+.|++..+...-.++ ..+|..+...|...|++++|...|++.... .+-.+ ...++.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 5566777889999999999987652100112 348888999999999999999999986531 11111 157888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTV----GCE-PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
.+-..|.+.|++++|...+++..+. +-. ....++..+...|.+.|++++|.+.+++..+.+++++
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999987632 211 1245778899999999999999999999998776653
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.91 E-value=0.0003 Score=61.82 Aligned_cols=128 Identities=5% Similarity=-0.060 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----------------VSLYADMIQVFGTNGLFQHVEILYFYLKTENSL 189 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----------------~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~ 189 (275)
.+-..|.+.|++++|...|++..+. .|+ ..+|+.+-..|.+.|++++|+..|++.... -
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 226 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D 226 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 4556777899999999999999884 333 589999999999999999999999998753 3
Q ss_pred CcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHhC
Q 023910 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFS-GIIRQDAFKYYG 259 (275)
Q Consensus 190 ~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A-~~l~~~m~~~~~ 259 (275)
+-+...|..+-.+|.+.|++++|...|++..+.. +-+...+..+-..+.+.|+.++| ..+++.|...+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999987542 23567888899999999999999 567777765543
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.89 E-value=0.00017 Score=67.66 Aligned_cols=122 Identities=6% Similarity=-0.137 Sum_probs=89.1
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVV 213 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~ 213 (275)
.|++++|.+.|++..+. -.-+...|..+-..|.+.|++++|++.|++.... -+-+...|..+-..|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998763 2335888999999999999999999999998743 3446789999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 214 DCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|++..+.. .-+...|..+-..|.+.|++++|.+.+++..+..|+
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999987542 235678899999999999999999999999888775
No 100
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.89 E-value=0.00043 Score=52.80 Aligned_cols=102 Identities=4% Similarity=-0.152 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
...|..+-..|...|++++|...|++.... .+.+...|..+-..|.+.|++++|...|++..+.. +.+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 456788888999999999999999998753 34478899999999999999999999999987542 336778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+.+.|++++|.+.+++..+..|+.
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999887763
No 101
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=0.0013 Score=46.55 Aligned_cols=94 Identities=13% Similarity=-0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+...+...|++++|.+.|+...+. ...+...|..+-..|.+.|++++|...+++.... .+.+...|..+-.+|.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 45566777899999999999999884 2447888999999999999999999999998753 3446888999999999
Q ss_pred hCCChhHHHHHHHHHHhC
Q 023910 205 GFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~ 222 (275)
+.|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999998754
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.88 E-value=8.2e-05 Score=57.34 Aligned_cols=121 Identities=8% Similarity=-0.025 Sum_probs=79.1
Q ss_pred cCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 134 QNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
.|+++.|++.|...... .| +...+-.|-..|.+.|++++|++.|++..+. -+-+..+|..+-..|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 35666777766665331 22 2344555667777778888888877776542 233567777777777778888888
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhCCc
Q 023910 213 VDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGII-RQDAFKYYGDL 261 (275)
Q Consensus 213 ~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l-~~~m~~~~~~~ 261 (275)
...|+...+. .| +...|..+-..|.+.|++++|.+. ++...+..|+-
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 8777776642 33 455677777777777777665543 57777777764
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.88 E-value=0.00022 Score=57.92 Aligned_cols=127 Identities=6% Similarity=-0.070 Sum_probs=95.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
+-..|.+.|++++|...|++..+. -+-+...|..+-..|...|++++|+..|++.... -+-+..+|..+-..|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 666788899999999999999885 2346889999999999999999999999998753 234677888888888766
Q ss_pred CC--hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 207 KL--RDLVVDCYELMKTVGCEPDRS--SYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 207 g~--~~~A~~l~~~M~~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|. .+.+...++... .|+.. .+..+-.++...|++++|.+.|++.++.+|..
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 344555555432 34433 33334445666899999999999999999974
No 104
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.87 E-value=0.00022 Score=56.50 Aligned_cols=137 Identities=9% Similarity=-0.029 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHH---cCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCc--CHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRK---EQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEP--EIQGF 196 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~---~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~p--d~~ty 196 (275)
.+-..+...|++++|...|++..+ +.|..| ...+++.+-..|...|++++|.+.|++.... .|-.| ....+
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 444567788999999999998766 111112 3567888889999999999999999876532 22122 24668
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 197 NALLKCLVGFKLRDLVVDCYELMKT----VGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 197 n~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
+.+-..|...|++++|...+++..+ .+-.+ -..++..+-..+...|++++|.+.+++..+.+.+.+
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 8888899999999999999988762 22211 133467888889999999999999999988877664
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.87 E-value=0.0025 Score=52.03 Aligned_cols=134 Identities=10% Similarity=-0.068 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH-HHHHHHHHHHHc------------------CCCHHHHHHHHHHhH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV-SLYADMIQVFGT------------------NGLFQHVEILYFYLK 184 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~tyn~Li~~~~~------------------~g~~~~A~~lf~~M~ 184 (275)
+..+...|.+.|++++|...|++..+...-.+.. ..+-.+-..|.+ .|+.++|+..|++..
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 123 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV 123 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH
Confidence 4456667777777777777777776642212221 133333333332 456777777777776
Q ss_pred hcCCCCcCH-HHH-----------------HHHHHHHHhCCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 023910 185 TENSLEPEI-QGF-----------------NALLKCLVGFKLRDLVVDCYELMKTVG-CEP-DRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 185 ~~~G~~pd~-~ty-----------------n~lI~~~~~~g~~~~A~~l~~~M~~~g-~~p-d~~ty~~li~~~~~~g~~ 244 (275)
+. -|+. ..+ -.+-..|.+.|++++|...|+++.+.- -.| ....+..+..++.+.|+.
T Consensus 124 ~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 124 RG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp TT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 43 2332 111 123345666777777777777776421 111 124566677777777777
Q ss_pred HHHHHHHHHHHHHhCC
Q 023910 245 AFSGIIRQDAFKYYGD 260 (275)
Q Consensus 245 ~~A~~l~~~m~~~~~~ 260 (275)
++|.+.++.+...+|+
T Consensus 201 ~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHhhCCC
Confidence 7777777777666665
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00049 Score=51.37 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=80.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
.=+.|.+.|++++|++.|++..+. -..+..+|..+-..|.+.|++++|+..|++..+- -+.+...|..+-.+|...
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHC
Confidence 445678899999999999998874 2447899999999999999999999999998753 244678999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCC
Q 023910 207 KLRDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd 227 (275)
|++++|.+.|++..+. .|+
T Consensus 95 ~~~~~A~~~~~~al~l--~P~ 113 (126)
T 4gco_A 95 REWSKAQRAYEDALQV--DPS 113 (126)
T ss_dssp TCHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHH--CcC
Confidence 9999999999988753 454
No 107
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.85 E-value=0.00052 Score=48.37 Aligned_cols=93 Identities=9% Similarity=-0.081 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc--CHHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP--EIQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p--d~~tyn~lI~~~ 203 (275)
.+-..+.+.|++++|...|++..+. ...+...|..+-..|...|++++|+..|++.... ... +...|..+-..|
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHH
Confidence 3445677899999999999999874 2447888999999999999999999999998753 233 588999999999
Q ss_pred HhC-CChhHHHHHHHHHHhC
Q 023910 204 VGF-KLRDLVVDCYELMKTV 222 (275)
Q Consensus 204 ~~~-g~~~~A~~l~~~M~~~ 222 (275)
.+. |++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 999 9999999999998754
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.85 E-value=0.001 Score=54.40 Aligned_cols=137 Identities=11% Similarity=0.029 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-HHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI-QGFNALLKC 202 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-~tyn~lI~~ 202 (275)
..+-..+.+.|++++|...|+++.+...-.|. ...+..+...|.+.|++++|+..|++..+...-.|.. ..+-.+-.+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 34445677889999999999999885322232 4678888999999999999999999987542122222 234333344
Q ss_pred HHh------------------CCChhHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHhcCCHHH
Q 023910 203 LVG------------------FKLRDLVVDCYELMKTVGCEPDRS-SY-----------------RTVINGLEAMEEVAF 246 (275)
Q Consensus 203 ~~~------------------~g~~~~A~~l~~~M~~~g~~pd~~-ty-----------------~~li~~~~~~g~~~~ 246 (275)
+.+ .|+.++|...|++..+. .|+.. .+ -.+-..|.+.|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 433 67999999999999853 23221 11 245667899999999
Q ss_pred HHHHHHHHHHHhCCccc
Q 023910 247 SGIIRQDAFKYYGDLEF 263 (275)
Q Consensus 247 A~~l~~~m~~~~~~~~~ 263 (275)
|...++++++.||+-..
T Consensus 166 A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp HHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHCcCCCc
Confidence 99999999999987543
No 109
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.84 E-value=0.00016 Score=63.41 Aligned_cols=138 Identities=8% Similarity=-0.091 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCcC-HHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEPE-IQGF 196 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~pd-~~ty 196 (275)
..+-..|...|++++|.+.|++..+...-.++ ..+|+.+-..|...|++++|...|++.... .+-.+. ..++
T Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 270 (406)
T 3sf4_A 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270 (406)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHH
Confidence 35566777889999999999988652111122 348888999999999999999999986531 111111 5788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 197 NALLKCLVGFKLRDLVVDCYELMKT----VGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 197 n~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
..+-..|.+.|++++|...|++..+ .+-.+ ...++..+-..|.+.|++++|.+.+++..+...+.+
T Consensus 271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998763 22222 155788889999999999999999999888766553
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.83 E-value=0.0013 Score=55.94 Aligned_cols=136 Identities=10% Similarity=-0.046 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC--CCCcC--HHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTEN--SLEPE--IQG 195 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~--G~~pd--~~t 195 (275)
+...+..+...|++++|.+.+.+..+.....++ ...+..+...|...|++++|+..|++..... ...+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 446678888999999999999988774211111 1234456667788899999999999875321 11222 458
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKT----VGCEP--DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
|+.+-..|...|++++|...|++..+ .+-.+ +..+|+.+-..|.+.|++++|.+.+++..+...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998762 22222 125888999999999999999999999876643
No 111
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.82 E-value=0.00013 Score=57.78 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=94.4
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCC-cCHHHHHHHHHHHHhCC
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLE-PEIQGFNALLKCLVGFK 207 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~-pd~~tyn~lI~~~~~~g 207 (275)
...|++++|.++++..... ......+++.+-..|...|++++|...|++... +.|.. ....+++.+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3579999999966665442 234678899999999999999999999988654 11222 23467888888999999
Q ss_pred ChhHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 208 LRDLVVDCYELMKT----VGCEP--DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 208 ~~~~A~~l~~~M~~----~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
++++|...+++..+ .|-.| ....+..+-..+...|++++|.+.+++..+...+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999988763 33222 2456788888999999999999999998866543
No 112
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.82 E-value=0.00021 Score=63.27 Aligned_cols=138 Identities=8% Similarity=-0.057 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCC-CcCHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSL-EPEIQGFN 197 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~-~pd~~tyn 197 (275)
.+-..|...|++++|.+.|++..+...-.++ ..+|..+-..|...|++++|...|++.... .+- .....++.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566778899999999999988663100112 348889999999999999999999887532 111 11257888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccc
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKTV----GCE-PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEF 263 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 263 (275)
.+-..|.+.|++++|...|++..+. +-. ....+|..+...|.+.|++++|.+.+++..+.+.+++-
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999987632 211 12457888999999999999999999999999887653
No 113
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.79 E-value=0.00036 Score=64.73 Aligned_cols=127 Identities=6% Similarity=-0.014 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
..+...+.+.|++++|.++|+...+. .|+ ...|..+...+.+.|++++|.++|+.-... .+.+...|......
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHH
Confidence 36666777788888888888888773 443 247888888877788888888888776532 11122222222111
Q ss_pred -HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 203 -LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 203 -~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
+...|+.++|..+|+...+.. +-+...|..+++.+.+.|+.++|..+|+.....
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 235677777777777665321 124566677777777777777777777776654
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.79 E-value=0.00069 Score=57.93 Aligned_cols=131 Identities=6% Similarity=-0.053 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH-HH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK-CL 203 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~-~~ 203 (275)
..+-..+.+.|++++|...|++..+. -.-+...+..|-..|.+.|++++|..+|++... ..|+......... .+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHHHHHHH
Confidence 34556677889999999999999874 233678888999999999999999999998853 3455543333332 36
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+.++.++|...|++..+.. +.+...+..+-..|...|++++|.+.+.++.+..|..
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 67778888888888776432 2356778888888999999999999999988876653
No 115
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.76 E-value=0.0012 Score=50.86 Aligned_cols=93 Identities=5% Similarity=-0.060 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+-..+.+.|++++|.+.|++..+. ..-+...|..+-..|.+.|++++|+..|++.... -+-+...|..+-.+|.
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34556777899999999999999884 2347889999999999999999999999998753 2446889999999999
Q ss_pred hCCChhHHHHHHHHHHh
Q 023910 205 GFKLRDLVVDCYELMKT 221 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~ 221 (275)
+.|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999999998874
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.75 E-value=0.0005 Score=53.94 Aligned_cols=126 Identities=11% Similarity=-0.042 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV-FGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~-~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
..+-..+.+.|++++|...|+...+. .|+...+..+... +.+.+...+|+..|++.... -+-+...+..+-..|
T Consensus 44 ~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~ 118 (176)
T 2r5s_A 44 LAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQY 118 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 35556666777888888777777553 2343322221111 11222233466666666532 122467777777777
Q ss_pred HhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
.+.|++++|...|++..+..-.+ +...+..+...+...|+.++|...+++..
T Consensus 119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888888888776543222 34567777777777888888877777654
No 117
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.75 E-value=0.002 Score=57.80 Aligned_cols=126 Identities=6% Similarity=-0.090 Sum_probs=80.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL-FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~-~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
.+.+.|++++|++.|++..+. -.-+...|+.+-..|...|+ +++|+..|++.... -+-+...|+.+-.+|.+.|+
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHccC
Confidence 344567777777777777663 12246667777777777775 77777777776542 22355667777777777777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 209 ~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+++|+..|+...+.. .-+...|..+-.++.+.|++++|.+.++++++..|.
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 777777777766421 124556666666777777777777777776666553
No 118
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.73 E-value=0.0021 Score=47.35 Aligned_cols=93 Identities=6% Similarity=-0.080 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+-..+.+.|++++|...|+...+. ...+...|..+-..|.+.|++++|+..|+..... .+-+...|..+-.+|
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 345566778899999999999998874 2446889999999999999999999999998753 344678999999999
Q ss_pred HhCCChhHHHHHHHHHH
Q 023910 204 VGFKLRDLVVDCYELMK 220 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~ 220 (275)
.+.|++++|...|+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999999999876
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.73 E-value=0.0005 Score=59.20 Aligned_cols=130 Identities=7% Similarity=-0.174 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCL 203 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~ 203 (275)
.+...|...|++++|.++|+.+... .|+....-.+-..|.+.|++++|+..|+..... ..|. ...+..+=.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 5667778899999999999999763 465546666667899999999999999855421 1221 23677778889
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPD--RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|+..|++-......|. .......-.++.+.|+.++|..+|+++....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999875444364 224555666788999999999999999999887
No 120
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.71 E-value=0.00072 Score=62.68 Aligned_cols=133 Identities=11% Similarity=0.073 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
......+.+.|++++|.++|+...+.....+......+++. +...|+.++|..+|+...+. .+-+...|..++..+.
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME-YYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 35556666788999999999998774222222222233332 33589999999999987653 2346788999999999
Q ss_pred hCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 205 GFKLRDLVVDCYELMKTVG-CEPD--RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~~~g-~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+.|+.++|..+|+.....+ ..|+ ...|...+....+.|+.+.+..+.+.+.+.+|+
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999988653 3443 557888888888999999999999999999985
No 121
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.69 E-value=0.00071 Score=59.76 Aligned_cols=136 Identities=3% Similarity=-0.065 Sum_probs=103.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCc-CHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEP-EIQG 195 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~p-d~~t 195 (275)
..+-..|...|+++.|...|++..+...-.++ ..+++.|-..|...|++++|++.|++...- .+-.+ ...+
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 34556777889999999999887652111122 467888889999999999999999876531 11111 1258
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKT----VGC-EPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~----~g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
|+.+-..|...|++++|...|++..+ .+. .-...++..+-..|.+.|++++|.+.+++..+..++
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998774 244 335667889999999999999999999998876543
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0016 Score=47.69 Aligned_cols=92 Identities=9% Similarity=0.027 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|++++|...|++..+. ...+...|..+-..|.+.|++++|+..|++.... -+-+...|..+-.+|..
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 4455677899999999999999884 2447899999999999999999999999998753 24467889999999999
Q ss_pred CCChhHHHHHHHHHHh
Q 023910 206 FKLRDLVVDCYELMKT 221 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~ 221 (275)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999999998874
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.68 E-value=0.00079 Score=53.87 Aligned_cols=98 Identities=5% Similarity=-0.177 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
...+..+-..|...|++++|+..|++. +.|+...|..+-..|.+.|++++|...|++..+.. +.+...|..+-.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 345666777888999999999999765 45688999999999999999999999999987543 346778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 237 GLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 237 ~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|.+.|++++|.+.+++..+..|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHcccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999987665
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.67 E-value=0.00098 Score=51.67 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|++++|...|+...+. -+-+...|..+-..|.+.|++++|+..|++...- -+-+...|..+-.+|.+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 4556677899999999999999884 2346889999999999999999999999998753 23356889999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDR 228 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~ 228 (275)
.|++++|...|+...+. .||.
T Consensus 117 lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCH
T ss_pred cCCHHHHHHHHHHHHHh--CCCH
Confidence 99999999999998854 3554
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.66 E-value=0.0013 Score=49.66 Aligned_cols=92 Identities=12% Similarity=-0.014 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|++++|...|++..+. -..+...|..+-..|.+.|++++|+..|+..... -+-+...|..+-.+|..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 3445677899999999999999874 2347888999999999999999999999998753 24466788889999999
Q ss_pred CCChhHHHHHHHHHHh
Q 023910 206 FKLRDLVVDCYELMKT 221 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~ 221 (275)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 126
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.65 E-value=0.00081 Score=57.47 Aligned_cols=136 Identities=11% Similarity=-0.080 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHc---CCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCc-CHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKE---QWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEP-EIQGFN 197 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~---~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~p-d~~tyn 197 (275)
.....|...|++++|.+.|++..+- .|-.++ ..+|+.+-..|.+.|++++|+..|++-.. +.|-.+ -..+|+
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455677889999999999877542 121122 57899999999999999999999987643 112111 146889
Q ss_pred HHHHHHHhC-CChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 198 ALLKCLVGF-KLRDLVVDCYELMKT----VGCEPD-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 198 ~lI~~~~~~-g~~~~A~~l~~~M~~----~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+-..|... |++++|...|++-.+ .+-.+. ..+|+.+-..+.+.|++++|.+.+++..+..++.
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 999999996 999999999998763 221111 3578889999999999999999999999887764
No 127
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.63 E-value=0.0012 Score=58.35 Aligned_cols=136 Identities=3% Similarity=-0.128 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCc-CHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKP-----QVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEP-EIQGF 196 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p-----~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~p-d~~ty 196 (275)
.+-..|...|+++.|...+++..+...-.+ ...+++.|-..|...|++++|++.|++... +.|-.+ ...++
T Consensus 146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555677889999999999988765211111 256788889999999999999999987653 111111 23678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 197 NALLKCLVGFKLRDLVVDCYELMKT----VGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 197 n~lI~~~~~~g~~~~A~~l~~~M~~----~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+.+-..|...|++++|...|++..+ .+.+....++..+-..+.+.|++++|.+.+++..+...+.
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 8888999999999999999998874 1333346788899999999999999999999998886653
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.003 Score=46.91 Aligned_cols=92 Identities=10% Similarity=-0.061 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
.+-..+.+.|++++|.+.|++..+. .|+ ...|..+-..|...|++++|+..|++.... .+.+...|..+-.
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 107 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHH
Confidence 4445667889999999999999773 566 688999999999999999999999998753 2346788899999
Q ss_pred HHHhCCChhHHHHHHHHHHhC
Q 023910 202 CLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~ 222 (275)
+|.+.|++++|...|++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999988753
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.63 E-value=0.0023 Score=48.97 Aligned_cols=92 Identities=11% Similarity=-0.040 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|++++|...|+...+. -..+...|..+-..|.+.|++++|+..|++.... -+-+...|..+-.+|..
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 4556677899999999999999874 2447888999999999999999999999998753 23466888899999999
Q ss_pred CCChhHHHHHHHHHHh
Q 023910 206 FKLRDLVVDCYELMKT 221 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~ 221 (275)
.|++++|...|+...+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 130
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=0.00028 Score=51.57 Aligned_cols=84 Identities=12% Similarity=-0.030 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHhHHcCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhH
Q 023910 134 QNHCLLALKVFEDIRKEQW--YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g--~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~ 211 (275)
.|++++|...|++..+. + -.-+...|..|-..|.+.|++++|+..|++.... .+-+...|..+-.+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 35555566666655442 1 0112345555555555666666666666555432 22234555555555555666666
Q ss_pred HHHHHHHHH
Q 023910 212 VVDCYELMK 220 (275)
Q Consensus 212 A~~l~~~M~ 220 (275)
|...|++..
T Consensus 80 A~~~~~~al 88 (117)
T 3k9i_A 80 GVELLLKII 88 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
No 131
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.56 E-value=0.0036 Score=45.57 Aligned_cols=93 Identities=14% Similarity=0.014 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC---HHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQV---SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE---IQGFNAL 199 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~---~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd---~~tyn~l 199 (275)
.+-..+.+.|++++|...|+...+.. ..+. ..+..+-..|.+.|++++|+..|+..... .+-+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 34456778999999999999998852 2223 47778889999999999999999998754 1223 6778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHhC
Q 023910 200 LKCLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~~ 222 (275)
-.+|.+.|++++|...|++..+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999998854
No 132
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.56 E-value=0.0028 Score=48.48 Aligned_cols=112 Identities=11% Similarity=-0.041 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc-CHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-EIQGFNALLKCL 203 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-d~~tyn~lI~~~ 203 (275)
..+-..|.+.|++++|.+.|++..+. -.-+..+|..+-..|.+.|++++|+..|++..+. .| +...|..+-..|
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL---NPTQKDLVLKIAELL 109 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 35567788999999999999999884 2336889999999999999999999999998743 34 578899999999
Q ss_pred HhCCChhHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 023910 204 VGFKLRDLVVDC-YELMKTVGCEP-DRSSYRTVINGLEAMEE 243 (275)
Q Consensus 204 ~~~g~~~~A~~l-~~~M~~~g~~p-d~~ty~~li~~~~~~g~ 243 (275)
.+.|+.++|... ++...+ +.| +...|...-..+.+.|+
T Consensus 110 ~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 999999877665 466553 234 45566666666665553
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.52 E-value=0.0013 Score=56.65 Aligned_cols=136 Identities=7% Similarity=-0.094 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHc---CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCc-CHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKE---QWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEP-EIQG 195 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~---~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~p-d~~t 195 (275)
+..+-..|.+.|++++|...|++..+- .|-.. -..+|+.+-..|.+ |++++|+..|++...- .|-.+ -..+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 345566777889999999999876442 12111 14678888888988 9999999999876431 11111 1468
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKT----VGCEPDR-SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~pd~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|+.+-..|.+.|++++|...|++..+ .+..++. .++..+...+...|++++|...+++.. ..|..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 88999999999999999999998873 3333332 266677777888899999999999988 77653
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.51 E-value=0.00061 Score=62.94 Aligned_cols=118 Identities=8% Similarity=-0.032 Sum_probs=90.2
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
+.+.|++++|.+.|++..+. -..+..+|+.+-..|.+.|++++|++.|++.... -+-+...|..+-.+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 44679999999999999884 2346899999999999999999999999998753 3446789999999999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023910 211 LVVDCYELMKTV-GCEPDRSSYRTVINGLEAMEEVAFSGIIRQ 252 (275)
Q Consensus 211 ~A~~l~~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A~~l~~ 252 (275)
+|...|++..+. .-.++....-..+..+.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998753 223343333333444888899999999988
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.50 E-value=0.0021 Score=51.15 Aligned_cols=120 Identities=7% Similarity=-0.019 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--------------VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP 191 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--------------~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p 191 (275)
.+-..+.+.|++++|...|++..+...-.|+ ...|..+-..|.+.|++++|+..|+..... -+.
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~ 120 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKN 120 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccc
Confidence 4455677899999999999999873211221 278888999999999999999999998753 345
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 248 (275)
+...|..+-.+|...|++++|...|++..+.. +-+...+..+-..+...++.+++.
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999887432 225566777777777777666665
No 136
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.0018 Score=60.06 Aligned_cols=135 Identities=4% Similarity=-0.114 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHc--CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCC-CCcC-H
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKE--QWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT----ENS-LEPE-I 193 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~--~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G-~~pd-~ 193 (275)
..+..+-..|++++|..++++..+. .-+.|+ ..++|.|...|...|++++|+.++++... ..| -.|+ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 4445667889999999999877552 113333 57899999999999999999999887542 112 2344 4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKT-----VGC-EP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g~-~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+||.|-..|...|++++|..++++-.+ .|- .| ...+.+.+-.++...+++++|+.++..+.+...+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999887652 231 12 3445567777788889999999999999886644
No 137
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.49 E-value=0.0015 Score=55.06 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCc-CHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEP-EIQGFN 197 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~p-d~~tyn 197 (275)
..-..+...|++++|..+|++..+.. ..+ ...|..+-..|...|++++|.+.|++.... .+-.| ...++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34456778999999999999998851 223 478889999999999999999999886421 12222 357888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKT----VGCEP-DRSSYRTVINGLEAMEE--------------------VAFSGIIRQ 252 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p-d~~ty~~li~~~~~~g~--------------------~~~A~~l~~ 252 (275)
.+-..|...|++++|...+++..+ .+-.+ ...++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 899999999999999999988763 22111 14478888899999999 999999988
Q ss_pred HHHHHhC
Q 023910 253 DAFKYYG 259 (275)
Q Consensus 253 ~m~~~~~ 259 (275)
+..+...
T Consensus 168 ~a~~~~~ 174 (338)
T 3ro2_A 168 ENLSLVT 174 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 138
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.48 E-value=0.00057 Score=60.42 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-H----HHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CC-CCcCHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-V----SLYADMIQVFGTNGLFQHVEILYFYLKTE---NS-LEPEIQGF 196 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~----~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G-~~pd~~ty 196 (275)
.+-..+...|++++|...|++..+. .|+ . .+|..+-..|...|++++|+..|++.... .+ ......+|
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4456677899999999999999885 333 3 57889999999999999999999886531 11 12345788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 023910 197 NALLKCLVGFKLRDLVVDCYELMKTV----GC-EPDRSSYRTVINGLEAMEE-----------------VAFSGIIRQDA 254 (275)
Q Consensus 197 n~lI~~~~~~g~~~~A~~l~~~M~~~----g~-~pd~~ty~~li~~~~~~g~-----------------~~~A~~l~~~m 254 (275)
..+-..|...|++++|...|++..+. +- .....+|..+-..|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999887632 21 2234578888899999999 99999988887
Q ss_pred HHHh
Q 023910 255 FKYY 258 (275)
Q Consensus 255 ~~~~ 258 (275)
.+.+
T Consensus 210 l~~~ 213 (411)
T 4a1s_A 210 LKLM 213 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.48 E-value=0.0028 Score=53.96 Aligned_cols=92 Identities=7% Similarity=-0.091 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+-..+.+.|++++|...|++..+. ...+...|+.+-..|.+.|++++|+..|++.... -+-+...|+.+-.+|.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34455666777777777777777663 1235677777777777777777777777776532 2335566777777777
Q ss_pred hCCChhHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMK 220 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~ 220 (275)
+.|++++|...|+...
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 7777777777777655
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.46 E-value=0.0015 Score=48.17 Aligned_cols=92 Identities=10% Similarity=-0.062 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..+-..+.+.|++++|...|++..+. -..+...|..+-..|.+.|++++|+..|++.... -+-+...+..+-.+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444555566666666666665553 1224555555555566666666666666555432 1223445555555555
Q ss_pred hCCChhHHHHHHHHHH
Q 023910 205 GFKLRDLVVDCYELMK 220 (275)
Q Consensus 205 ~~g~~~~A~~l~~~M~ 220 (275)
+.|++++|...|++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5556666655555544
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.45 E-value=0.0019 Score=47.60 Aligned_cols=97 Identities=4% Similarity=-0.094 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGL 238 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~ 238 (275)
+..+-..+.+.|++++|+..|++.... -+-+...|..+-.++.+.|++++|...|++..+. .| +...+..+-..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 445667788999999999999998753 3447888889999999999999999999988753 23 566888899999
Q ss_pred HhcCCHHHHHHHHHHHHHHhCC
Q 023910 239 EAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 239 ~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|.+.+++..+..|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999887765
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.44 E-value=0.0031 Score=50.18 Aligned_cols=126 Identities=8% Similarity=-0.143 Sum_probs=92.0
Q ss_pred hcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--------------HHHHHH
Q 023910 133 RQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--------------IQGFNA 198 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--------------~~tyn~ 198 (275)
..|.++.+.+.|+.-... .......|..+-..|.+.|++++|+..|++......-.|+ ...|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345566666655533221 1114566777888899999999999999998742111221 278889
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+-.+|.+.|++++|...++...+. -..+...|..+-.+|...|++++|.+.+++..+..|..
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999998854 23467788899999999999999999999999888763
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0021 Score=47.73 Aligned_cols=103 Identities=8% Similarity=0.008 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCCcC----HHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPE----IQGFNALL 200 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G~~pd----~~tyn~lI 200 (275)
.+=+.+.+.|++++|++.|++..+. -+-+...|+.+-..|.+.|++++|++.|++...- ....++ ..+|..+=
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4456778899999999999999884 2346889999999999999999999999986531 011122 24777888
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVGCEPDRSSYR 232 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 232 (275)
.+|...|++++|.+.|++-.+ ..||..+..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 889999999999999998765 345654433
No 144
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.42 E-value=0.00074 Score=65.13 Aligned_cols=130 Identities=11% Similarity=-0.066 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
+..+-..|.+.|++++|.+.|++..+. -.-+...|+.+-..|.+.|++++|++.|++.... -+-+...|..+-.+|
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 335556777889999999999999874 2336788999999999999999999999998743 233568888999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.+.|++++ ...|++..+.. .-+...|..+-.++.+.|++++|.+.+++..+..|
T Consensus 512 ~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred HHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 99999999 99999887532 22566888899999999999999999998665544
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0029 Score=48.58 Aligned_cols=66 Identities=5% Similarity=-0.094 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..|..+-.+|.+.|++++|...++...+.. +-+...|..+-.+|...|++++|.+.++...+..|.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 456666666666666666666666665431 224556666666666667777777666666666665
No 146
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.41 E-value=0.0017 Score=55.92 Aligned_cols=135 Identities=7% Similarity=-0.088 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHc---CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCc-CHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKE---QWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEP-EIQGFN 197 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~---~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~p-d~~tyn 197 (275)
.....|...|++++|...|.+..+- .|-.+ -..+|+.+-..|.+.|++++|+..|++-.. +.|-.. -..+|+
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455677889999999999877552 11000 146889999999999999999999987532 222111 246788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKT----VGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.+-..|.+ |++++|...|++-.+ .|-.+ ...+|+.+-..|.+.|++++|.+.+++..+.+++.
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 88888988 999999999987763 22211 14578889999999999999999999999887654
No 147
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.40 E-value=0.0023 Score=54.61 Aligned_cols=128 Identities=9% Similarity=-0.114 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMI-QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li-~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
...+-..|.+.|++++|..+|+..... .|+........ ..+.+.++.++|+..|++.... -+.+...+..+-..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~ 228 (287)
T 3qou_A 154 GLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 346777888999999999999998764 45654333333 3366778888899999888754 35578899999999
Q ss_pred HHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVG-CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
|...|++++|...|.+..+.. -..+...+..+...|...|+.++|...+++...
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999998542 122367889999999999999999998887553
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.40 E-value=0.00028 Score=51.56 Aligned_cols=94 Identities=7% Similarity=-0.174 Sum_probs=67.8
Q ss_pred cCCCHHHHHHHHHHhHhcCC--CCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 169 TNGLFQHVEILYFYLKTENS--LEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G--~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
..|++++|+..|++.... + -+-+...|..+-..|.+.|++++|...|++..+.. +-+...+..+-.++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence 457888899999887642 2 12345778888888889999999999999887542 2246677888888899999999
Q ss_pred HHHHHHHHHHHhCCccch
Q 023910 247 SGIIRQDAFKYYGDLEFL 264 (275)
Q Consensus 247 A~~l~~~m~~~~~~~~~~ 264 (275)
|.+.+++..+..|.-.-+
T Consensus 80 A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 999999988887765333
No 149
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.37 E-value=0.0019 Score=56.90 Aligned_cols=135 Identities=10% Similarity=-0.133 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHH---cCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCCcCHHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRK---EQWY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLEPEIQGFN 197 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~---~~g~-~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~pd~~tyn 197 (275)
..+-..|...|++++|.+.|++..+ ..+. .....+++.|-..|.+.|++++|...|++...- .+-......++
T Consensus 228 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 307 (383)
T 3ulq_A 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFE 307 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677888999999999988766 1122 224677888999999999999999999876531 11222234467
Q ss_pred HHHHHHHhCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCcc
Q 023910 198 ALLKCLVGFKL---RDLVVDCYELMKTVGCEPD-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 198 ~lI~~~~~~g~---~~~A~~l~~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
.+-..|...|+ +++|..++++. +..|+ ...+..+-..|.+.|++++|.+.+++..+...++.
T Consensus 308 ~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 308 FLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 77777888888 77788877765 33333 34677888999999999999999999998887764
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.36 E-value=0.018 Score=46.56 Aligned_cols=115 Identities=7% Similarity=-0.178 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCC-cCHHHHHHHHHHHHh----C
Q 023910 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT----NGLFQHVEILYFYLKTENSLE-PEIQGFNALLKCLVG----F 206 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~----~g~~~~A~~lf~~M~~~~G~~-pd~~tyn~lI~~~~~----~ 206 (275)
+.++|++.|+...+. | +..+++.|-..|.. .+++++|++.|++-... |.. -+...++.|=..|.. .
T Consensus 68 ~~~~A~~~~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCC
Confidence 666666666666553 3 55666666666655 56666777666665432 211 015556666666666 5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHH
Q 023910 207 KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM-E-----EVAFSGIIRQDAFKY 257 (275)
Q Consensus 207 g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~-g-----~~~~A~~l~~~m~~~ 257 (275)
++.++|...|+.-.+.+ .+...+..|-..|... | ++++|.+.++...+.
T Consensus 143 ~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp CCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 56677777776666553 2333445555555443 2 667777776666544
No 151
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.35 E-value=0.0027 Score=55.50 Aligned_cols=132 Identities=10% Similarity=0.019 Sum_probs=100.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCc-CHHHHHH
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEP-EIQGFNA 198 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~p-d~~tyn~ 198 (275)
.-..+.+.|++++|...|++..+.. ..+ ..+|..+-..|...|++++|...|++... ..+-.| ...+|..
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3456678899999999999998851 223 46788999999999999999999987542 112222 2567888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 023910 199 LLKCLVGFKLRDLVVDCYELMKTV----GCEP-DRSSYRTVINGLEAMEE--------------------VAFSGIIRQD 253 (275)
Q Consensus 199 lI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~li~~~~~~g~--------------------~~~A~~l~~~ 253 (275)
+-..|...|++++|...+++..+. +-.+ ...++..+-..|...|+ +++|.+.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 889999999999999999887632 1111 24578888899999999 9999999988
Q ss_pred HHHHhCC
Q 023910 254 AFKYYGD 260 (275)
Q Consensus 254 m~~~~~~ 260 (275)
..+.+.+
T Consensus 173 al~~~~~ 179 (406)
T 3sf4_A 173 NLSLVTA 179 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7765443
No 152
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.0036 Score=50.53 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=87.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-HHHHHH----------------HHHHHHcCCCHHHHHHHHHHhHhcCCC
Q 023910 127 VLRELLRQNHCLLALKVFEDIRKEQWYKPQ-VSLYAD----------------MIQVFGTNGLFQHVEILYFYLKTENSL 189 (275)
Q Consensus 127 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~tyn~----------------Li~~~~~~g~~~~A~~lf~~M~~~~G~ 189 (275)
.-..+.+.|++++|...|++..+. .|+ ...|.. +-..|.+.|++++|+..|++.... -
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 344566889999999999999874 343 455666 888999999999999999998753 2
Q ss_pred CcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 023910 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEE 243 (275)
Q Consensus 190 ~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~ 243 (275)
+-+...|..+-..|...|++++|...|++..+. .| +..+|..+-..|...|.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 446789999999999999999999999998853 34 56677777777765543
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.32 E-value=0.0033 Score=55.05 Aligned_cols=101 Identities=9% Similarity=0.112 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC----------------HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE----------------IQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd----------------~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
+...|+.+-..|.+.|++++|+..|++.... .|+ ...|+.+-.+|.+.|++++|...|+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678888999999999999999999998743 333 589999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 220 KTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 220 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.. +-+...|..+-.+|...|++++|.+.|++..+..|.
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 8542 336788999999999999999999999999988876
No 154
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.26 E-value=0.0066 Score=53.01 Aligned_cols=136 Identities=10% Similarity=-0.066 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhc---CCCC--c-CHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTE---NSLE--P-EIQG 195 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~---~G~~--p-d~~t 195 (275)
.+-..+...|++++|...+++......-.++ ..+++.+-..|...|++++|...+++.... .|-. | ....
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3345567789999999999987552101112 234667778899999999999999886531 1222 3 3456
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKTV----GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
++.+-..|...|++++|...+++..+. |......+|..+-..+...|++++|.+.+++.....+..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 777888899999999999999987632 211134578888889999999999999999998776553
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.24 E-value=0.005 Score=56.32 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC-------------HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ-------------VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP 191 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~-------------~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p 191 (275)
..+-..|.+.|++++|...|++..+...-.++ ...|+.+-.+|.+.|++++|+..|++.... -+-
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~ 349 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DSA 349 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCc
Confidence 35567788899999999999998773111111 689999999999999999999999998753 345
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhC
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSG-IIRQDAFKYYG 259 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~-~l~~~m~~~~~ 259 (275)
+...|..+-.+|.+.|++++|...|+...+. .| +...+..+-..+.+.++.++|. .++..|...+.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999999999999999999998753 34 4457778888888888888776 34555544433
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.23 E-value=0.015 Score=45.04 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHH-HHcCCCH--HHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQV-FGTNGLF--QHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~-~~~~g~~--~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+-..|...|++++|...|++..+. ...+...|..+-.. |...|++ ++|+..|++.... -+-+...+..+-..
T Consensus 49 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 124 (177)
T 2e2e_A 49 LLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLLASD 124 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 4456677899999999999999874 23467788888888 7889998 9999999998754 23457888899999
Q ss_pred HHhCCChhHHHHHHHHHHhC
Q 023910 203 LVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~ 222 (275)
|.+.|++++|...|++..+.
T Consensus 125 ~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 125 AFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHhh
Confidence 99999999999999998854
No 157
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.21 E-value=0.0049 Score=54.25 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=98.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCC-CCc-CHHHHHHHH
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT---ENS-LEP-EIQGFNALL 200 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G-~~p-d~~tyn~lI 200 (275)
.+...|++++|...|++..+...-.+| ..+|+.|-..|...|++++|+..+++... ..+ ..+ ...+++.+-
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 345789999999999998663111233 56788888999999999999999887653 111 122 256888899
Q ss_pred HHHHhCCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 201 KCLVGFKLRDLVVDCYELMKT----VGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
..|...|++++|.+.|++..+ .|-.+ ...+++.+-..|...|++++|.+.+++..+.+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988763 22222 235778888899999999999999999887543
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.16 E-value=0.0088 Score=46.85 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-------------IQGFNALLKCLVGFKLRDLVVDCYELMKTV---- 222 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---- 222 (275)
+..+-+.+.+.|++++|+..|++-.. +.|+ ...|+.+-.++.+.|++++|+..++.-.+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 33444455556666666666665442 1222 237777778888888888888887776642
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 223 -GCEPDR-SSY----RTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 223 -g~~pd~-~ty----~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-+.||. ..| .-.-.++...|++++|.+.|++.++.-|+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 236653 355 66777888899999999999999988776
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00042 Score=49.20 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
+...|..+-..+.+.|++++|++.|++.... -+.+...|..+-.+|.+.|++++|...|++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455666666777777777777777766542 233566666777777777777777777776653
No 160
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.09 E-value=0.023 Score=49.47 Aligned_cols=131 Identities=9% Similarity=-0.066 Sum_probs=96.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCC-cCHHHHHHHHH
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQV----SLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLE-PEIQGFNALLK 201 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~-pd~~tyn~lI~ 201 (275)
.+...|++++|...+++..... -..+. .+++.+-..|...|++++|...+++... +.|.. ....+++.+-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3456899999999999987742 12222 2567777888899999999999988653 11211 11244677778
Q ss_pred HHHhCCChhHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 202 CLVGFKLRDLVVDCYELMKT----VGCE--P-DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~----~g~~--p-d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.|...|++++|...+++..+ .+.. | ....+..+-..+...|++++|.+++++..+..++.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 88999999999999988763 3332 3 34566778888999999999999999988877654
No 161
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.08 E-value=0.015 Score=56.07 Aligned_cols=135 Identities=11% Similarity=0.058 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHc-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKE-QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~-~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
+...++..-+.|..+.|.++|....+. ....+.+....+.|...+ .++.+.|..+|+...+. +.-+..-|...+..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY--FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 345566666788999999999999874 223445555555555332 35699999999988764 44566677888888
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEP--DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
....|+.+.|..+|+.-....-.+ ....|...++--.+.|..+.+..+.+.+.+.+|+-
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 888999999999999877543322 34678888998889999999999999999999974
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.06 E-value=0.002 Score=56.49 Aligned_cols=128 Identities=11% Similarity=-0.040 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHhHhcC
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVS------------------LYADMIQVFGTNGLFQHVEILYFYLKTEN 187 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~------------------tyn~Li~~~~~~g~~~~A~~lf~~M~~~~ 187 (275)
.+-..+.+.|++++|...|++..+. .|+.. .|+.+-.+|.+.|++++|+..|++....
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 259 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE- 259 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4455666789999999999998763 45543 7888899999999999999999988743
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhCC
Q 023910 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR-SSYRTVING-LEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 188 G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~li~~-~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
-+-+...|..+-.+|...|++++|...|+...+ +.|+. ..+..|... ....+..+.+..++..|....|.
T Consensus 260 -~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 260 -EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 244788999999999999999999999998753 34433 333333333 23456777788888888776654
No 163
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.05 E-value=0.003 Score=60.83 Aligned_cols=123 Identities=7% Similarity=-0.106 Sum_probs=102.2
Q ss_pred HhcCCHHHHHHHHHHhH--------HcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 132 LRQNHCLLALKVFEDIR--------KEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~--------~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
...|++++|.+.|++.. +. ...+...|..+-..|.+.|++++|++.|++.... -.-+...|+.+-.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 57899999999999997 42 2345678888999999999999999999998753 234778899999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.|++++|...|++..+.. .-+...|..+-..|.+.|++++ .+.+++..+..|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 99999999999999987532 1145678889999999999999 9999998887664
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.04 E-value=0.013 Score=49.74 Aligned_cols=57 Identities=9% Similarity=-0.232 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
.+-..|.+.|++++|.+.|++..+. -.-+...|+.+-..|...|++++|+..|++..
T Consensus 43 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 43 NRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555666666666666666552 12245566666666666666666666666554
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.02 E-value=0.15 Score=46.43 Aligned_cols=122 Identities=7% Similarity=-0.107 Sum_probs=97.5
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhHhcCCCCcCHHHHH
Q 023910 126 AVLRELLRQ-----NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG---LFQHVEILYFYLKTENSLEPEIQGFN 197 (275)
Q Consensus 126 ~li~~~~~~-----g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g---~~~~A~~lf~~M~~~~G~~pd~~tyn 197 (275)
.+-..|... ++.++|...|+...+. | +...+..|-..|.+.| +.++|++.|++.... | +...+.
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~ 367 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQF 367 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHH
Confidence 444455555 7899999999988774 3 6677888888887766 788999999888754 3 677888
Q ss_pred HHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Q 023910 198 ALLKCLVG----FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA----MEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 198 ~lI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~~ 258 (275)
.|-..|.. .++.++|...|+.-.+.| +...+..|-..|.+ .+++++|.+.++...+..
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88888888 789999999999988876 46677778888887 899999999999988776
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.99 E-value=0.012 Score=52.40 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
..|+.+-.+|.+.|++++|...+++..+.. .-+...|..+-.+|.+.|++++|.+.+++..+..|
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 444444444555555555555555444321 11334444444445555555555555555444444
No 167
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.98 E-value=0.0075 Score=43.30 Aligned_cols=77 Identities=12% Similarity=-0.062 Sum_probs=41.7
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 140 ALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 140 A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
|...|++..+. -..+...|..+-..|.+.|++++|+..|++.... -+.+...|..+-.+|.+.|++++|...|+..
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555442 1234555666666666666666666666655432 1223455555555566666666666655554
Q ss_pred H
Q 023910 220 K 220 (275)
Q Consensus 220 ~ 220 (275)
.
T Consensus 80 l 80 (115)
T 2kat_A 80 L 80 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 168
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.96 E-value=0.028 Score=58.05 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
.+..++..+.+.|++++|.+.+..-++. .++....+.+..+|++.+++++...+. + .|+...|..+=..
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDR 1204 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHH
Confidence 3456677777777777777777665552 233333444666666666666433221 1 1244455555555
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
|-..|++++|..+|... ..|..+...|++.|++++|.+.+++.
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 66666666666666653 26666666666666666666666553
No 169
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.94 E-value=0.22 Score=45.25 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh----
Q 023910 134 QNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT----NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG---- 205 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~----~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~---- 205 (275)
.+++++|.+.|+...+. | +...+..|-..|.. .++.++|++.|++.... | +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCC
Confidence 45666666666666553 3 45556666666655 56666676666666543 2 55566666666665
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEA----MEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~ 257 (275)
.++.++|...|+.-.+.| +...+..|-..|.. .+++++|.+++++..+.
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 566777777776666554 34455555555554 66677777777665543
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.92 E-value=0.0067 Score=45.13 Aligned_cols=104 Identities=7% Similarity=-0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC----HHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCC-C
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE----IQGFNALLKCLVGFKLRDLVVDCYELMKT----VGCEP-D 227 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~p-d 227 (275)
..+|+.+-..|...|++++|+..|++......-.++ ..+++.+-..|...|++++|...+++..+ .+-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888999999999999999886532000011 25788899999999999999999998763 22222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 228 RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 228 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
...+..+-..+...|++++|.+.+++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999998876544
No 171
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.87 E-value=0.038 Score=53.28 Aligned_cols=148 Identities=8% Similarity=-0.022 Sum_probs=98.1
Q ss_pred HHHHHHHhhhcHHh--HHHHHHHHHhcCCHHHHHHHHHHhHHcC--------CCCCC------------HHHHHHHHHHH
Q 023910 110 HVFNSKFRRLLKFD--MIAVLRELLRQNHCLLALKVFEDIRKEQ--------WYKPQ------------VSLYADMIQVF 167 (275)
Q Consensus 110 ~~~~~~~~~l~~~~--~~~li~~~~~~g~~~~A~~lf~~m~~~~--------g~~p~------------~~tyn~Li~~~ 167 (275)
.+|...+..+-... ....+...-+.|+++.|.++|+...+.. .-.|+ ..+|-..++..
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 66666654322222 1255666677899999999999887630 00142 34688888888
Q ss_pred HcCCCHHHHHHHHHHhHhc-CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 168 GTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 168 ~~~g~~~~A~~lf~~M~~~-~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
.+.|..+.|..+|....+. ....+.+....+.|.-.+ .++.+.|..+|+...+. +.-+...+...++.....|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 8889999999999988653 223444554444444222 35689999999988754 33344455688888888899999
Q ss_pred HHHHHHHHHHHhC
Q 023910 247 SGIIRQDAFKYYG 259 (275)
Q Consensus 247 A~~l~~~m~~~~~ 259 (275)
|..+|+......+
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999988666554
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.85 E-value=0.015 Score=51.76 Aligned_cols=121 Identities=7% Similarity=0.010 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcC-------------CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQ-------------WY-KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL 189 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~-------------g~-~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~ 189 (275)
+..+-..+.+.|++++|.+.|++..+.. .. .-+..+|+.+-..|.+.|++++|++.+++.... -
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 4456677888999999999999886510 01 124678899999999999999999999998742 2
Q ss_pred CcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 023910 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 190 ~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~ 248 (275)
+-+...|..+-.+|.+.|++++|...|++..+. .| +...+..+-..+.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999988753 34 5556666666666666666554
No 173
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.84 E-value=0.028 Score=58.14 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKC 202 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~ 202 (275)
++..+-+.|-..|++++|..+|... ..|..+...|.+.|++++|.+.+.+- . |..+|..+-.+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~-----n~~aWkev~~a 1259 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--N-----STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--C-----CHHHHHHHHHH
Confidence 4455556666677777777777764 25777777777777777777777654 1 55777777777
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 203 LVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 203 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
|...|++..|...... +.-+...+..++.-|.+.|.+++|..+++.....
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7777777777665442 3345557778999999999999999999876543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.75 E-value=0.013 Score=53.88 Aligned_cols=95 Identities=4% Similarity=-0.150 Sum_probs=80.8
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 023910 164 IQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE 243 (275)
Q Consensus 164 i~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~ 243 (275)
-..|.+.|++++|++.|++..+. -+-+...|+.+-.+|.+.|++++|...+++..+.. .-+...|..+-.+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34566789999999999998753 34468999999999999999999999999988652 2357788899999999999
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 023910 244 VAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 244 ~~~A~~l~~~m~~~~~~~ 261 (275)
+++|.+.+++..+..|+.
T Consensus 90 ~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999988763
No 175
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.73 E-value=0.014 Score=41.78 Aligned_cols=84 Identities=6% Similarity=-0.113 Sum_probs=65.8
Q ss_pred HHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 175 HVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 175 ~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
+|+..|++.... -+-+...|..+-..|.+.|++++|...|++..+.. +.+...|..+-..|...|++++|.+.+++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567777777532 34467888888889999999999999999887532 234667888888999999999999999998
Q ss_pred HHHhCCc
Q 023910 255 FKYYGDL 261 (275)
Q Consensus 255 ~~~~~~~ 261 (275)
.+..|..
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8877653
No 176
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.72 E-value=0.16 Score=40.66 Aligned_cols=125 Identities=7% Similarity=-0.143 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG----LFQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g----~~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
...+-..|...+++++|++.|+...+. | +...++.|=..|.. + +.++|++.|++-... | +...+..|
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~~~L 91 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGEIVL 91 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 334445566689999999999999884 4 78888888888888 6 899999999998654 4 67788888
Q ss_pred HHHHHh----CCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 023910 200 LKCLVG----FKLRDLVVDCYELMKTVGCE-PDRSSYRTVINGLEA----MEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 200 I~~~~~----~g~~~~A~~l~~~M~~~g~~-pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~ 257 (275)
=..|.. .+++++|..+|++-.+.|.. -+...+..|-..|.. .+++++|.++++...+.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 888877 88999999999998876643 125677778888888 88999999999998766
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.018 Score=51.12 Aligned_cols=141 Identities=5% Similarity=-0.196 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhHh---cCCCCcC-HHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV----SLYADMIQVFGTNGLFQHVEILYFYLKT---ENSLEPE-IQG 195 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~G~~pd-~~t 195 (275)
+..+...|.+.|++++|.+.+....+..+-.++. .+.+.+-..+...|+.++|.+++++... ..+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4567888899999999999999886632222232 2233333344456889999999887642 1233333 467
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCccch
Q 023910 196 FNALLKCLVGFKLRDLVVDCYELMKT----VGCEPDR-SSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDLEFL 264 (275)
Q Consensus 196 yn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~pd~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 264 (275)
+..+...|...|++++|..++++... .+-+|.. .+|..+...|...|++++|..+++......++...-
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 88888999999999999999988763 2223333 367888889999999999999999998877766553
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.69 E-value=0.018 Score=52.54 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC----------------HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE----------------IQGFNALLKCLVGFKLRDLVVDCYELM 219 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd----------------~~tyn~lI~~~~~~g~~~~A~~l~~~M 219 (275)
+...|+.+-..|.+.|++++|+..|++.... .|+ ...|+.+-.+|.+.|++++|...|++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3567888889999999999999999988642 222 689999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 220 KTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 220 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.+.. .-+...|..+-.+|...|++++|...|++..+..|.
T Consensus 344 l~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 344 LGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8542 236778899999999999999999999999888765
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.042 Score=48.66 Aligned_cols=87 Identities=10% Similarity=-0.090 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHhHH---cCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC---CCCc-CHHHHHHHHHHHHh
Q 023910 134 QNHCLLALKVFEDIRK---EQWYKPQ-VSLYADMIQVFGTNGLFQHVEILYFYLKTEN---SLEP-EIQGFNALLKCLVG 205 (275)
Q Consensus 134 ~g~~~~A~~lf~~m~~---~~g~~p~-~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~---G~~p-d~~tyn~lI~~~~~ 205 (275)
.|+.+.|.+++..... ..+..+. ..++..|...|...|++++|..++++..... +-.| ....|+.++..|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 5889999999987644 1222333 5678889999999999999999999876431 1122 24689999999999
Q ss_pred CCChhHHHHHHHHHH
Q 023910 206 FKLRDLVVDCYELMK 220 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~ 220 (275)
.|++++|..+++...
T Consensus 188 ~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 188 LRNLAKSKASLTAAR 202 (434)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHH
Confidence 999999999998876
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.64 E-value=0.017 Score=44.19 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcC--------C--------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCC
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQ--------W--------YKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSL 189 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~--------g--------~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~ 189 (275)
..-+.+.+.|++++|...|.+..+.. . -.-+...|+.+-.+|.+.|++++|+..++..... -
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~ 93 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--E 93 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--C
Confidence 44566778899999999998876620 0 0113478888999999999999999999998753 3
Q ss_pred CcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 023910 190 EPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR 228 (275)
Q Consensus 190 ~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 228 (275)
+-+...|..+-.+|...|++++|...|+...+. .|+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 456889999999999999999999999987753 4553
No 181
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.61 E-value=0.032 Score=49.98 Aligned_cols=132 Identities=8% Similarity=-0.096 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC-------------------CCHHHHHHHHHHhHhc
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN-------------------GLFQHVEILYFYLKTE 186 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~-------------------g~~~~A~~lf~~M~~~ 186 (275)
.+-..|.+.|++++|...|++..+. .+-+..+|+.|-..|... +..++|...|++....
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 3444555556666666666665553 122344444443333221 1234455555554322
Q ss_pred CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRS--SYRTVIN-GLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 187 ~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
-+.+..+|..+-..|.+.|++++|...|++..+....|... .+..+.. .+...|+.++|.+.+++..+..|+.
T Consensus 330 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 330 --NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp --CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred --CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 12334556677778888999999999999887654443321 1222222 2446789999999999988877764
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.54 E-value=0.014 Score=54.20 Aligned_cols=92 Identities=8% Similarity=-0.082 Sum_probs=71.6
Q ss_pred HHHcCCCHHHHHHHHHHhHhc--CCC---Cc-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCC-CC-CHHHHH
Q 023910 166 VFGTNGLFQHVEILYFYLKTE--NSL---EP-EIQGFNALLKCLVGFKLRDLVVDCYELMKT-----VGC-EP-DRSSYR 232 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~--~G~---~p-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g~-~p-d~~ty~ 232 (275)
.+-..|++++|+.++++.... .-+ .| ...++|.|-..|...|++++|..++++..+ .|- .| ...+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999876531 111 23 347899999999999999999999988762 221 23 456889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 233 TVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 233 ~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
.|-..|...|++++|..++++..+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999997654
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.53 E-value=0.01 Score=51.86 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHH------------------HHHHHHHHHHhCCChhHHHHHHHH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ------------------GFNALLKCLVGFKLRDLVVDCYEL 218 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~------------------tyn~lI~~~~~~g~~~~A~~l~~~ 218 (275)
...|..+-..|.+.|++++|+..|++... +.|+.. .|+.+-.+|.+.|++++|...|+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45577788889999999999999998753 345543 788999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 219 MKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 219 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..+.. .-+...|..+-.+|...|++++|.+.|++..+..|.
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 87532 236778999999999999999999999998877664
No 184
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.012 Score=53.57 Aligned_cols=94 Identities=10% Similarity=-0.000 Sum_probs=63.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhHhcC--CCCc----CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CC-CCC-CHHH
Q 023910 164 IQVFGTNGLFQHVEILYFYLKTEN--SLEP----EIQGFNALLKCLVGFKLRDLVVDCYELMKT-----VG-CEP-DRSS 230 (275)
Q Consensus 164 i~~~~~~g~~~~A~~lf~~M~~~~--G~~p----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g-~~p-d~~t 230 (275)
+..+.+.|++++|+.++++..... -+.| ...+++.|...|...|++++|..++++..+ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556778888888887765311 1112 236788888888888888888888776652 22 123 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~ 257 (275)
|+.|-..|...|++++|..++++..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778888888888888888888886654
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.51 E-value=0.04 Score=36.98 Aligned_cols=63 Identities=8% Similarity=0.027 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
...|..+-..|.+.|++++|+..|++.... .+-+...|..+-..|.+.|++++|...|++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344555555666666666666666665432 223445555666666666666666666665543
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.49 E-value=0.1 Score=40.73 Aligned_cols=109 Identities=9% Similarity=-0.051 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCC--------H-----HHHHHHHHHHHcCCCHHHHHHHHHHhHhc----C
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQ--------V-----SLYADMIQVFGTNGLFQHVEILYFYLKTE----N 187 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~--------~-----~tyn~Li~~~~~~g~~~~A~~lf~~M~~~----~ 187 (275)
...-+.+.+.|++++|...|++..+- .|+ . ..|+.+-.++.+.|++++|+..|++-..- .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556677889999999999998773 344 3 38999999999999999999998876531 0
Q ss_pred CCCcCH-HHH----HHHHHHHHhCCChhHHHHHHHHHH-----hCCCCCCHHHHHHHHH
Q 023910 188 SLEPEI-QGF----NALLKCLVGFKLRDLVVDCYELMK-----TVGCEPDRSSYRTVIN 236 (275)
Q Consensus 188 G~~pd~-~ty----n~lI~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~ty~~li~ 236 (275)
-+.||. ..| ...=.++...|++++|+..|+.-. +.|+.+......-.+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 126654 577 888889999999999999999875 4677776655554444
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0069 Score=42.63 Aligned_cols=88 Identities=8% Similarity=-0.060 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC-------HHHHH
Q 023910 125 IAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE-------IQGFN 197 (275)
Q Consensus 125 ~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd-------~~tyn 197 (275)
..+-..+.+.|++++|.+.|++..+. ...+...|..+-..|.+.|++++|++.|++... ..|+ ...+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHHHHH
Confidence 34556777899999999999999884 244788899999999999999999999999863 4555 45555
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q 023910 198 ALLKCLVGFKLRDLVVDCYE 217 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~ 217 (275)
.+-.++...|+.+.|...|+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 66666666666665554443
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.39 E-value=0.061 Score=40.35 Aligned_cols=110 Identities=9% Similarity=-0.127 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh----CCChh
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG----FKLRD 210 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~----~g~~~ 210 (275)
++.++|++.|++.-+. | .|+.. |=..|...+.+++|++.|++--+. | +...++.|=..|.. .++.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHH
Confidence 4678899999998884 5 34443 666677778889999999988654 3 77788888888888 78999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 023910 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEA----MEEVAFSGIIRQDAFKY 257 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~ 257 (275)
+|.+.|+.-.+.| +...+..|-..|.. .+++++|.++++...+.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999988876 45677777777877 89999999999987654
No 189
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.34 E-value=0.016 Score=52.88 Aligned_cols=90 Identities=6% Similarity=-0.111 Sum_probs=67.6
Q ss_pred cCCCHHHHHHHHHHhHhc--CCCC---cC-HHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CC-CCC-CHHHHHHHH
Q 023910 169 TNGLFQHVEILYFYLKTE--NSLE---PE-IQGFNALLKCLVGFKLRDLVVDCYELMKT-----VG-CEP-DRSSYRTVI 235 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~--~G~~---pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g-~~p-d~~ty~~li 235 (275)
..|++++|+.++++.... .-+- |+ ..++|.|-.+|...|++++|..++++..+ .| -.| ...+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999988875431 1122 33 37899999999999999999999988762 23 123 345789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHh
Q 023910 236 NGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 236 ~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
..|...|++++|..++++..+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999977653
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.32 E-value=0.081 Score=35.35 Aligned_cols=76 Identities=7% Similarity=-0.016 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
.+-..+.+.|++++|...|++..+. ...+..+|..+-..|.+.|++++|...|++.... -+-+...+..+-..+.+
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 4455677899999999999999874 2346788999999999999999999999998753 23355666666555544
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.27 E-value=0.037 Score=38.80 Aligned_cols=63 Identities=13% Similarity=-0.049 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
+...|..+-..|.+.|++++|+..|++.... -+-+...|..+-.+|.+.|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555556666666666666666655432 12234455555555556666666665555443
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.19 E-value=0.025 Score=39.74 Aligned_cols=67 Identities=7% Similarity=-0.070 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 192 EIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 192 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
+...+..+-..|.+.|++++|...|+...+.. +-+...|..+-.+|.+.|++++|.+.+++..+..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 44556666666666666666666666665332 11334566666666666666666666666665543
No 193
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.12 Score=46.07 Aligned_cols=136 Identities=10% Similarity=-0.043 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHc----CC--CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHh---cC-C-CCc
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKE----QW--YKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKT---EN-S-LEP 191 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~----~g--~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~---~~-G-~~p 191 (275)
+..+-..+...|+.++|++.|++-.+- .+ ..| ..++|+.+-..|...|++++|...|++... .. + ..+
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 344556677789999999999876431 11 123 468899999999999999999999987642 10 1 112
Q ss_pred -CHHHHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 192 -EIQGFNALLKCLVGF--KLRDLVVDCYELMKTVGCEPD-RSSYRTVING---LEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 192 -d~~tyn~lI~~~~~~--g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
...+|+.+-.++.+. +++++|...|++..+. .|+ ...+..+... +...++.++|.+.+++..+..|..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 345666665566554 4689999999987743 344 3333333333 456788899999999999888875
No 194
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.05 E-value=0.079 Score=48.09 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcC--CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCC-CCc
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQ--WYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT----ENS-LEP 191 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~--g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G-~~p 191 (275)
+....+..+.+.|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.++++... ..| -.|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 44456777888999999999999886521 13333 57899999999999999999999987652 111 234
Q ss_pred C-HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 192 E-IQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 192 d-~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
+ ..+|+.|-..|...|++++|..++++-.
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4 3789999999999999999999998765
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.71 E-value=0.081 Score=48.13 Aligned_cols=88 Identities=6% Similarity=-0.044 Sum_probs=69.1
Q ss_pred hcCCHHHHHHHHHHhHHc--CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCC-CCcCH-HHHHHHH
Q 023910 133 RQNHCLLALKVFEDIRKE--QWYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKT----ENS-LEPEI-QGFNALL 200 (275)
Q Consensus 133 ~~g~~~~A~~lf~~m~~~--~g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G-~~pd~-~tyn~lI 200 (275)
..|++++|..++++..+. .-+.|+ ..++|.|...|...|++++|+.++++... ..| -.|++ .+||.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999886551 123343 58899999999999999999999988652 112 23444 7899999
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~ 220 (275)
..|...|++++|..++++-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998765
No 196
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.31 E-value=0.047 Score=37.59 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQVS-LYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
.+.+.|++++|.+.|++..+. ...+.. .|..+-..|.+.|++++|++.|++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555442 112333 44445555555555555555555543
No 197
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.08 E-value=0.17 Score=38.96 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=64.3
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC---HHHHHHHHHHHHhCCChhHHHH
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE---IQGFNALLKCLVGFKLRDLVVD 214 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd---~~tyn~lI~~~~~~g~~~~A~~ 214 (275)
..|...|++..+. -.-+...+..+-..|...|++++|...|++.... .|+ ...+..+...|...|+.++|..
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 3478888888774 1235889999999999999999999999998743 443 5689999999999999999999
Q ss_pred HHHHHH
Q 023910 215 CYELMK 220 (275)
Q Consensus 215 l~~~M~ 220 (275)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998654
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.96 E-value=1.9 Score=40.30 Aligned_cols=119 Identities=9% Similarity=-0.069 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCC-ChhHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG--LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFK-LRDLVV 213 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g--~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g-~~~~A~ 213 (275)
++++++.++.+.+. -.-+..+|+.---.+.+.| +++++++.++++.+. -.-|...|+---..+.+.| ..++++
T Consensus 89 ~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHH
Confidence 89999999999885 3457889999888888889 779999999999864 3558889998888888888 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHhCC
Q 023910 214 DCYELMKTVGCEPDRSSYRTVINGLEAM--------------EEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~~~~ 260 (275)
+.++++.+... -|...|+-.-..+.+. +.+++|.+++.+.+...|+
T Consensus 165 ~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 165 AFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 99999876543 2666666655555542 5689999999999888776
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.81 E-value=0.51 Score=43.42 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~ 205 (275)
..+..+-+.+..+.|.++|+.. +..+..+.+....+.+.... .++.+.|..+|+...+..+- +...+...++-..+
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Confidence 4455555677899999999999 42222223333334554443 23699999999998765322 23446667777788
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
.|+.+.|..+|+... -....|...++--...|+.+.+.++++.+.+.+.
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 999999999999872 2467788888887888999999999999887553
No 200
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.77 E-value=0.51 Score=40.72 Aligned_cols=121 Identities=7% Similarity=-0.080 Sum_probs=73.9
Q ss_pred CCHH--HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC------HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC
Q 023910 135 NHCL--LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL------FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF 206 (275)
Q Consensus 135 g~~~--~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~------~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~ 206 (275)
|.++ ++++.++.+.+. -.-|-..|+.--..+.+.|. ++++++.++++... -+-|...|+-+-..+.+.
T Consensus 158 ~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERF 233 (306)
T ss_dssp TCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhc
Confidence 4444 566666666553 13355556555555555554 56666666655432 344666666666666666
Q ss_pred CChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 207 KLRDL-VVDCYELMKTVG--CEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 207 g~~~~-A~~l~~~M~~~g--~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
|+... +.++.++..+.+ -..+......+.+.|.+.|+.++|.++++.+.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 234 DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 65333 444555544322 134667888889999999999999999999876443
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.65 E-value=0.31 Score=46.83 Aligned_cols=100 Identities=11% Similarity=0.055 Sum_probs=63.2
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
....|++++|.++.+.+ .+...|..|-..+.+.|+++.|++.|..++ + |..+...|...|+.+
T Consensus 662 ~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d---------~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH-D---------LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C---------HHHHHHHHHHTTCHH
T ss_pred hhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C---------hhhhHHHHHHcCCHH
Confidence 34556666666664433 266788889999999999999999988874 2 445555555566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 211 LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 211 ~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
....+-+.....| -|+.-...|.+.|++++|.+++.+
T Consensus 725 ~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 725 GLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555544444443 234444445556666666666655
No 202
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.61 E-value=1 Score=40.56 Aligned_cols=118 Identities=7% Similarity=-0.063 Sum_probs=60.5
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHhHhcCCCCcCHHHHHH
Q 023910 126 AVLRELLRQN---HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN----GLFQHVEILYFYLKTENSLEPEIQGFNA 198 (275)
Q Consensus 126 ~li~~~~~~g---~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~----g~~~~A~~lf~~M~~~~G~~pd~~tyn~ 198 (275)
.+-..|.+.| +.++|++.|....+. | .++...+..|-..|... ++.++|++.|+... . | +...++.
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-g---~~~a~~~ 253 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-G---YPASWVS 253 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-G---STHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-C---CHHHHHH
Confidence 3444445556 666666666666553 2 33444444455555443 56666666666654 2 2 3333333
Q ss_pred HHHH-H--HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 023910 199 LLKC-L--VGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME-----EVAFSGIIRQDA 254 (275)
Q Consensus 199 lI~~-~--~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g-----~~~~A~~l~~~m 254 (275)
|=.. | ...|+.++|...|++-.+.| +...+..|-..|. .| ++++|.+.|+..
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 3333 2 23566666666666655555 3334444444443 33 566666555543
No 203
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.07 E-value=2.6 Score=36.21 Aligned_cols=123 Identities=7% Similarity=-0.079 Sum_probs=91.5
Q ss_pred hcC--CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHH----HcC---CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 133 RQN--HCLLALKVFEDIRKEQWYKPQVSLYADMIQVF----GTN---GLFQHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 133 ~~g--~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~----~~~---g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
..| +++++++.++.+... ..-+..+|+.--..+ ... +++++++++++.+... -+-|-..|+----.+
T Consensus 79 ~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl 154 (306)
T 3dra_A 79 NLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLV 154 (306)
T ss_dssp TCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 445 899999999999885 233566677654444 444 7899999999999864 455888888888888
Q ss_pred HhCCChh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhCC
Q 023910 204 VGFKLRD--LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE------VAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 204 ~~~g~~~--~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~------~~~A~~l~~~m~~~~~~ 260 (275)
.+.|.++ +++++++.|.+.... |...|+---..+.+.|. ++++.+.+++++...|.
T Consensus 155 ~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~ 218 (306)
T 3dra_A 155 DTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ 218 (306)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence 8888888 999999999865432 55666655555566665 88899998888876554
No 204
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.06 E-value=2.9 Score=36.72 Aligned_cols=122 Identities=7% Similarity=-0.108 Sum_probs=95.4
Q ss_pred cC-CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcC-C-CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 134 QN-HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTN-G-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 134 ~g-~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~-g-~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
.| .+++++++++.+... ..-+..+|+.---.+.+. + ++++++++++.+... -.-|-..|+----.+.+.|.++
T Consensus 101 l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 101 LNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp TTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccc
Confidence 45 599999999999885 355788899877777776 6 889999999999743 4557888887766666666666
Q ss_pred --------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHhCC
Q 023910 211 --------LVVDCYELMKTVGCEPDRSSYRTVINGLEAMEE-------VAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 211 --------~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~-------~~~A~~l~~~m~~~~~~ 260 (275)
++++.++++.+... -|...|+---..+.+.++ ++++.+.+++++...|.
T Consensus 177 ~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~ 240 (349)
T 3q7a_A 177 RISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH 240 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence 99999999987543 367777777777777776 78899999888877665
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.85 E-value=0.91 Score=30.71 Aligned_cols=58 Identities=5% Similarity=-0.050 Sum_probs=47.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 023910 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQ-GFNALLKCLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 222 (275)
.-..+.+.|++++|+..|++.... -+-+.. .|..+-.+|.+.|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345677889999999999998753 233556 8889999999999999999999998854
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.63 E-value=0.23 Score=38.68 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=70.0
Q ss_pred HhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCH----------HHHHHHHHHhHhcCCCCc-CHHHHHHHH
Q 023910 132 LRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF----------QHVEILYFYLKTENSLEP-EIQGFNALL 200 (275)
Q Consensus 132 ~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~----------~~A~~lf~~M~~~~G~~p-d~~tyn~lI 200 (275)
.+.+.+++|.+.++...+. -.-+...|+.+-.++...+++ ++|+..|++-.+ +.| +...|+.+=
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 3556788999999988774 234677888777777777664 588888888764 344 557888888
Q ss_pred HHHHhCC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023910 201 KCLVGFK-----------LRDLVVDCYELMKTVGCEPDRSSYRTVIN 236 (275)
Q Consensus 201 ~~~~~~g-----------~~~~A~~l~~~M~~~g~~pd~~ty~~li~ 236 (275)
.+|...| ++++|...|++-.+ +.|+...|.-.+.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8888764 78888888887664 4566555544444
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.09 E-value=1.3 Score=34.07 Aligned_cols=68 Identities=12% Similarity=-0.068 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 191 PEIQGFNALLKCLVGFK---LRDLVVDCYELMKTVGCEP---DRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 191 pd~~tyn~lI~~~~~~g---~~~~A~~l~~~M~~~g~~p---d~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
++..+--.+--++++.+ +++++..+|++..+.. .| ....|+. --++.+.|++++|.++++.+.+.-|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~L-Av~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYL-AVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH-HHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHH-HHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 44444445555555555 4445666665555432 22 1122332 22345666666666666666666654
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.03 E-value=1.9 Score=38.22 Aligned_cols=121 Identities=10% Similarity=-0.094 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHH----cCC-CHHHHHHHHHHhHh---cCCCCcCHHHHHHHHHHHHh
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQ-VSLYADMIQVFG----TNG-LFQHVEILYFYLKT---ENSLEPEIQGFNALLKCLVG 205 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~-~~tyn~Li~~~~----~~g-~~~~A~~lf~~M~~---~~G~~pd~~tyn~lI~~~~~ 205 (275)
....+|..+|++..+. .|+ ...|..+--+|. ..+ .......+-..+.. ...-..+..+|.++-..+..
T Consensus 213 ~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 213 KSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 3468899999999884 565 233333222221 111 11111111111111 01236688888888777777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
.|++++|...++...+.+ |+...|..+-..+.-.|+.++|.+.+++...+-|.
T Consensus 290 ~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999765 89888888888899999999999999998887665
No 209
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.76 E-value=1.3 Score=37.81 Aligned_cols=100 Identities=9% Similarity=-0.118 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcC--HHHHHHHHHHHHh
Q 023910 130 ELLRQNHCLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPE--IQGFNALLKCLVG 205 (275)
Q Consensus 130 ~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd--~~tyn~lI~~~~~ 205 (275)
.+.+.+++++|+..|+...+. ..|. ...+..|=.++.+.|++++|++.|++.... ...|. .......-.++.+
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHH
Confidence 677899999999999866442 1221 236777788999999999999999998632 23264 3456667778889
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 023910 206 FKLRDLVVDCYELMKTVGCEPDRSSYRTV 234 (275)
Q Consensus 206 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 234 (275)
.|+.++|..+|+++... .|+...+..|
T Consensus 221 lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 99999999999999864 3553444444
No 210
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.83 E-value=0.86 Score=40.54 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----hCCCCCCHHHHH
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK-----TVGCEPDRSSYR 232 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~ty~ 232 (275)
+...++..+...|++++|+..+...... .+.+...|-.+|.+|.+.|+..+|++.|+... +-|+.|...+=.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455677778888999988888887654 56688889999999999999999998888775 458999877633
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.51 E-value=1.7 Score=30.44 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-----CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 156 QVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-----SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-----G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
+...+-.|-..+.+.|+++.|...|++..+.. +-.+....|..|-.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556667777777888888888777654321 1123456677777777777777777777777653
No 212
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.46 E-value=4.2 Score=36.50 Aligned_cols=120 Identities=8% Similarity=-0.053 Sum_probs=82.1
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhHhcCCCCcCHHHHHH
Q 023910 126 AVLRELLRQNH----CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG---LFQHVEILYFYLKTENSLEPEIQGFNA 198 (275)
Q Consensus 126 ~li~~~~~~g~----~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g---~~~~A~~lf~~M~~~~G~~pd~~tyn~ 198 (275)
.+-..|...+. .+.+..++..... -.|+ .+..|-..|.+.| +.++|++.|+.-... -.++...+..
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g~~~a~~~~~ 218 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALN---TTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSR--GTVTAQRVDS 218 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCSCHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 44444555553 4445555554433 1333 8888889999999 899999999988754 3556666666
Q ss_pred HHHHHHhC----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHH
Q 023910 199 LLKCLVGF----KLRDLVVDCYELMKTVGCEPDRSSYRTVING-L--EAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 199 lI~~~~~~----g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~-~--~~~g~~~~A~~l~~~m~~ 256 (275)
|-..|... ++.++|...|+... .| +...+..|-.. + ...+++++|.+++++..+
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 77777655 69999999999987 43 33344444444 3 458999999999998654
No 213
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.41 E-value=4.3 Score=31.95 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=72.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
+--..+|+++.|.++-+++ . +...|..|-+..-+.|+++-|++.|...+ + |..+.-.|.-.|+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--N-----DSITWERLIQEALAQGNASLAEMIYQTQH-S---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT-C---------HHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHh--C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhC-C---------HHHHHHHHHHhCC
Confidence 3345789999999998776 1 67889999999999999999999998875 2 5566666666777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 209 RDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 209 ~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
.+.-..+-+.-...| -+|.-...+.-.|+++++.+++.+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 766555544433443 245555556666777777766655
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.16 E-value=2.5 Score=36.21 Aligned_cols=108 Identities=8% Similarity=0.093 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhHHcCCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHhHhcCCCCc--CHHHHHHHHHHHHhC
Q 023910 137 CLLALKVFEDIRKEQWYKPQ---VSLYADMIQVFGTN-----GLFQHVEILYFYLKTENSLEP--EIQGFNALLKCLVGF 206 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~---~~tyn~Li~~~~~~-----g~~~~A~~lf~~M~~~~G~~p--d~~tyn~lI~~~~~~ 206 (275)
...|..++++..+ +.|+ -..|+.|-..|.+. |+.++|.+.|++-.. +.| +..++...-..+++.
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHh
Confidence 4556666666655 4677 67899999999994 999999999999874 566 377788888888884
Q ss_pred -CChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 023910 207 -KLRDLVVDCYELMKTVGCE--PDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYY 258 (275)
Q Consensus 207 -g~~~~A~~l~~~M~~~g~~--pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~ 258 (275)
|+.++|.+.+++-...... |+....|.+ .-.+|..++.+..+.|
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQDFF 299 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHHHC
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHHhc
Confidence 9999999999999987776 885444433 3356667777666554
No 215
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.08 E-value=2 Score=38.11 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh----cCCCCcCHHH
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT----ENSLEPEIQG 195 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~----~~G~~pd~~t 195 (275)
...++..+...|+.++|.......... ..-+...|-.||.+|.+.|+..+|++.|+.... +.|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 346778888899999999999998775 355888999999999999999999999998653 4699998764
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.96 E-value=3.6 Score=30.23 Aligned_cols=86 Identities=9% Similarity=-0.069 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHh-
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGT----NGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVG- 205 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~----~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~- 205 (275)
|...+.++.|++.|++--+. | +...++.|=..|.. .++.++|++.|++--+. | +...+..|=..|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-N---DQDGCLILGYKQYAG 106 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHCC
Confidence 33456678899999999884 4 78888888888888 79999999999998754 4 67788888888888
Q ss_pred ---CCChhHHHHHHHHHHhCCC
Q 023910 206 ---FKLRDLVVDCYELMKTVGC 224 (275)
Q Consensus 206 ---~g~~~~A~~l~~~M~~~g~ 224 (275)
.++.++|...|+.-.+.|.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHHHHCCC
Confidence 7899999999999887774
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.82 E-value=0.52 Score=36.59 Aligned_cols=90 Identities=10% Similarity=0.030 Sum_probs=69.9
Q ss_pred HcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh----------hHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 023910 168 GTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR----------DLVVDCYELMKTVGCEP-DRSSYRTVIN 236 (275)
Q Consensus 168 ~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~----------~~A~~l~~~M~~~g~~p-d~~ty~~li~ 236 (275)
.+.+.+++|.+.++.-... -+-|...|+.+=.++...|++ ++|+..|++-.+- .| +...|..+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 3456788999999887654 244778888788888877664 5899999887743 34 5568888999
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHHhCCc
Q 023910 237 GLEAME-----------EVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 237 ~~~~~g-----------~~~~A~~l~~~m~~~~~~~ 261 (275)
+|...| ++++|.+.|++..+.-|+-
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 998764 8999999999999998874
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.81 E-value=2.6 Score=29.43 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=57.2
Q ss_pred hcHHhHHHHHHHHHhcCCHHHHHHHHHHhHHcC-----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH
Q 023910 119 LLKFDMIAVLRELLRQNHCLLALKVFEDIRKEQ-----WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEI 193 (275)
Q Consensus 119 l~~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~-----g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~ 193 (275)
+...|+..+-..+.+.|++..|...|+...+.. +-.+....|..|-.+|.+.|++++|..++++..+ +.|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~---l~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE---LDPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCC
Confidence 344577888888999999999999999876631 1123577899999999999999999999999874 45554
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.21 E-value=2 Score=41.10 Aligned_cols=128 Identities=13% Similarity=0.003 Sum_probs=89.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 121 KFDMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
......++..+.+.|.+++|.++.+.-..+ .....+.|++++|.++.+.+. +...|..|-
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~-------------f~~~l~~~~~~~A~~~~~~~~-------~~~~W~~la 688 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPDQDQK-------------FELALKVGQLTLARDLLTDES-------AEMKWRALG 688 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCCHHHH-------------HHHHHHHTCHHHHHHHHTTCC-------CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCCcchh-------------eehhhhcCCHHHHHHHHHhhC-------cHhHHHHHH
Confidence 344456777778889999988776433221 234556899999999876552 678999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHhCCccchHHH
Q 023910 201 KCLVGFKLRDLVVDCYELMKTVG-------CEPDRSSYRTVINGLEAMEEVAFSGIIRQ------DAFKYYGDLEFLEED 267 (275)
Q Consensus 201 ~~~~~~g~~~~A~~l~~~M~~~g-------~~pd~~ty~~li~~~~~~g~~~~A~~l~~------~m~~~~~~~~~~~e~ 267 (275)
..+.+.|+++.|.+.|..+.+.. ..-|..-...+.+.....|+++.|..++- +.++.|-+++..+|.
T Consensus 689 ~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A 768 (814)
T 3mkq_A 689 DASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEA 768 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHH
Confidence 99999999999999999886321 12244455566777777888888887764 355556555555544
Q ss_pred H
Q 023910 268 E 268 (275)
Q Consensus 268 ~ 268 (275)
-
T Consensus 769 ~ 769 (814)
T 3mkq_A 769 A 769 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 220
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=88.34 E-value=11 Score=35.06 Aligned_cols=120 Identities=5% Similarity=-0.193 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL----------FQHVEILYFYLKTENSLEPEIQGFNALLKCLV 204 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~----------~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~ 204 (275)
..-++|++.++.+.+. -.-+...|+.-=..+.+.|+ +++++++++.+... -+=+...|+.---.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456789999999884 13356777765555555555 89999999999854 3447788888888888
Q ss_pred hCC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhC
Q 023910 205 GFK--LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAME-EVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 205 ~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~~~ 259 (275)
+.| ++++++++++.+.+... -|...|+----.+.+.| ..+++.+.++++++..|
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 889 77999999999996542 26677777667777888 89999999888776544
No 221
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.93 E-value=13 Score=32.27 Aligned_cols=121 Identities=7% Similarity=-0.149 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC--------
Q 023910 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL-FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF-------- 206 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~-~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~-------- 206 (275)
.+++++++++.+.+. -.-|-..|+.---.+.+.|. ++++++.++.+... -+-|...|+-.-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 125 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccc
Confidence 478899999999885 25578888887777777787 58888888888754 455777787776666654
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHhCCc
Q 023910 207 ------KLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM-----------EEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 207 ------g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~-----------g~~~~A~~l~~~m~~~~~~~ 261 (275)
+.++++++.++...... +=|...|+-+--.+.+. +.++++.+.++++.+..|+.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 45678888888776421 22555555443334443 46888889999988888874
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.96 E-value=6.5 Score=29.90 Aligned_cols=63 Identities=10% Similarity=-0.067 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGC 224 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 224 (275)
.+.-++.+...|+-++-.++..++.. .-+|+....-.+-+||.+-|+..+|-+++.+--+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44445555555555555555555322 1345555555555666666666666666555555554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.80 E-value=8.4 Score=29.45 Aligned_cols=85 Identities=12% Similarity=-0.065 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhHhcCCCCc--CHHHHHHHHHHHHhCCChhH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG---LFQHVEILYFYLKTENSLEP--EIQGFNALLKCLVGFKLRDL 211 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g---~~~~A~~lf~~M~~~~G~~p--d~~tyn~lI~~~~~~g~~~~ 211 (275)
+..+.+-|.+.... |. ++..+...+--++++++ +.++++.+|++..+. . .| +...+-.|=-+|.+.|++++
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34456666666553 33 67777777777888888 566899999988764 2 34 23444445556689999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 023910 212 VVDCYELMKTVGCEPD 227 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd 227 (275)
|.+.++...+ +.|+
T Consensus 90 A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHh--cCCC
Confidence 9999998874 3454
No 224
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=86.76 E-value=15 Score=31.83 Aligned_cols=119 Identities=9% Similarity=-0.060 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC-hhHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG--LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL-RDLVV 213 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g--~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~-~~~A~ 213 (275)
+++++.+++.+... -.-+..+|+.---.+.+.| .+++++.+++.+... -+-|-..|+----.+.+.|. +++++
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 67899999999885 3458899998887787877 489999999999864 45688888888888888888 59999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHhCC
Q 023910 214 DCYELMKTVGCEPDRSSYRTVINGLEAM--------------EEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 214 ~l~~~M~~~g~~pd~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~~~~ 260 (275)
+.++.+.+... -|...|+-.-..+.+. +.++++.+.+.+.+...|.
T Consensus 166 ~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~ 225 (331)
T 3dss_A 166 AFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 225 (331)
T ss_dssp HHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 99999986543 3555666554444443 5688999999998877665
No 225
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=85.35 E-value=18 Score=31.54 Aligned_cols=120 Identities=8% Similarity=-0.063 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhC-C-ChhH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGF-K-LRDL 211 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g-~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~-g-~~~~ 211 (275)
+..++|+++++.+... -.-+...||.-=..+...| .+++++++++.+... -+=+...|+.--..+.+. + ++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHH
Confidence 4456789999999884 2335677888777777778 599999999999854 455777888877777776 7 8999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHhC
Q 023910 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVA--------FSGIIRQDAFKYYG 259 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~--------~A~~l~~~m~~~~~ 259 (275)
++.+++.+.+.. .-|...|+----.+.+.|.++ ++.+..+++++..+
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 999999998543 225566655444444445555 88999998887655
No 226
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.73 E-value=5.7 Score=28.35 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHH
Q 023910 139 LALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALL 200 (275)
Q Consensus 139 ~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI 200 (275)
+..+-++.+-. ..+.|+.....+-+++|-+.+++.-|+++|+-.+.+ +.+...+|..++
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHH
Confidence 34444444444 345666666666666666666666666666665533 333333444443
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=83.34 E-value=13 Score=33.92 Aligned_cols=90 Identities=9% Similarity=0.036 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPD-RSSYRTVINGL 238 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~li~~~ 238 (275)
|-..++.+-+.+..+.|..+|+.. ...+..+.+....+.+.... .++.+.|..+|+...+.- |+ ...+...++-.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 444444444567788999999888 33233333333333333322 336899999999887532 22 23455667777
Q ss_pred HhcCCHHHHHHHHHH
Q 023910 239 EAMEEVAFSGIIRQD 253 (275)
Q Consensus 239 ~~~g~~~~A~~l~~~ 253 (275)
.+.|+.+.|..+|+.
T Consensus 365 ~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 365 LRIGDEENARALFKR 379 (493)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 788999998877776
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.19 E-value=13 Score=27.43 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHHhCCChhH---HHHHHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 191 PEIQGFNALLKCLVGFKLRDL---VVDCYELMKTVGCEP-DRSSY-RTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 191 pd~~tyn~lI~~~~~~g~~~~---A~~l~~~M~~~g~~p-d~~ty-~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|+..+--.+-.++++....++ ++.++++....+ .| +..-| =.|--++.|.|++++|.+.++.+.+.-|.-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444444445555666555444 666666655442 12 12211 133445667777777777777777777653
No 229
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.86 E-value=13 Score=26.51 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=50.6
Q ss_pred cCC-CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 023910 169 TNG-LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT-VGCEPDRSSYRTVING 237 (275)
Q Consensus 169 ~~g-~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~ty~~li~~ 237 (275)
+.. +.-++.+-++.+-.. .+.|+.....+.+.||-|.+++..|.++|+-.+. .|-. ...|..+++-
T Consensus 21 ~~~iD~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 444 566777777777654 6899999999999999999999999999999884 3332 3467777654
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=80.82 E-value=11 Score=25.73 Aligned_cols=64 Identities=8% Similarity=-0.128 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHcCCC---HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 156 QVSLYADMIQVFGTNGL---FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~---~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
|...+..+-.++...++ .++|..+|++.... -+-++.....+=..+.+.|++++|...|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 45555555555432 122334444444555556666666666665553
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=80.68 E-value=12 Score=31.95 Aligned_cols=110 Identities=11% Similarity=-0.104 Sum_probs=78.5
Q ss_pred CHHHHHHHHH-HHHcC--CC------HHHHHHHHHHhHhcCCCCcC---HHHHHHHHHHHHh-----CCChhHHHHHHHH
Q 023910 156 QVSLYADMIQ-VFGTN--GL------FQHVEILYFYLKTENSLEPE---IQGFNALLKCLVG-----FKLRDLVVDCYEL 218 (275)
Q Consensus 156 ~~~tyn~Li~-~~~~~--g~------~~~A~~lf~~M~~~~G~~pd---~~tyn~lI~~~~~-----~g~~~~A~~l~~~ 218 (275)
....|..++. .+... |. ..+|..++++..+ +.|+ ...|+.|-..|.+ .|+.++|.+.|++
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 3566777665 34432 33 3566666666542 4566 6789999999999 5999999999999
Q ss_pred HHhCCCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC----ccchHHHHHH
Q 023910 219 MKTVGCEP--DRSSYRTVINGLEAM-EEVAFSGIIRQDAFKYYGD----LEFLEEDEED 270 (275)
Q Consensus 219 M~~~g~~p--d~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~~~~----~~~~~e~~~~ 270 (275)
-.+- .| +..++...-+.+++. |+.++|.+++++.+..-+. ..+.+...++
T Consensus 230 AL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~ 286 (301)
T 3u64_A 230 LTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQK 286 (301)
T ss_dssp HHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHH
T ss_pred HHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHH
Confidence 8753 34 366888888999985 9999999999999876444 4444444433
No 232
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.02 E-value=10 Score=28.52 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH
Q 023910 137 CLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLK 201 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~ 201 (275)
.-+..+-++.+-. ..+.|+.....+-+++|-+.+++--|+++|+-.+.+ +.+...+|.-+|.
T Consensus 69 ~wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3344555555555 467888888888888888888888888888888754 5555555666554
No 233
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.99 E-value=16 Score=37.10 Aligned_cols=114 Identities=10% Similarity=0.069 Sum_probs=81.3
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCC-----------------------HHHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQ-----------------------VSLYADMIQVFGTNGLFQHVEILYFYLKT 185 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-----------------------~~tyn~Li~~~~~~g~~~~A~~lf~~M~~ 185 (275)
..|..+|++++|.+.|.+.-. |+..+ ..=|..++..+.+.|.++.+.++-..-..
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455668999999999977532 22211 12367788888888888888876554322
Q ss_pred cCC-CCcCH--HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 023910 186 ENS-LEPEI--QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAF 246 (275)
Q Consensus 186 ~~G-~~pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~ 246 (275)
..+ -.++. ..|+.+.+++...|++++|...+-.+.+...+- .....||..+|..|.+++
T Consensus 928 ~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~--~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 928 SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK--SCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH--HHHHHHHHHHHHHCCHHH
T ss_pred hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHhCCChhh
Confidence 111 22322 258999999999999999999999998766553 467788999999888763
No 234
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=76.69 E-value=15 Score=32.33 Aligned_cols=75 Identities=11% Similarity=-0.108 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 023910 154 KPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRT 233 (275)
Q Consensus 154 ~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~ 233 (275)
..+..+|.++--.+...|++++|...+++...- .|+...|..+=..+.-.|++++|.+.|++-.. +.|...||.-
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 557888888877777789999999999999854 38888887778888899999999999987664 4677777653
No 235
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.15 E-value=19 Score=27.16 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023910 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVING 237 (275)
Q Consensus 172 ~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~ 237 (275)
+.-+..+-++.+-.. .+.|+.....+.+.+|-|.+++-.|.++|+-.+.+ +.+....|..+++-
T Consensus 68 D~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 455666666776654 68999999999999999999999999999998843 22334467776654
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=71.43 E-value=32 Score=26.37 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHcCCCH------HHHHHHHHHhHhcCCCCcCH----HHHHHHHHHH---HhCCChhHHHHHHHHHHhC
Q 023910 156 QVSLYADMIQVFGTNGLF------QHVEILYFYLKTENSLEPEI----QGFNALLKCL---VGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~------~~A~~lf~~M~~~~G~~pd~----~tyn~lI~~~---~~~g~~~~A~~l~~~M~~~ 222 (275)
|.-+|=..|...-+.|++ ++..++|+.--.. ++|+. ..|--|---| -..+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445555555555555655 5555666655432 44432 0011000000 1226777777777777633
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 023910 223 GCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 223 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 260 (275)
+=+. ...|-.--+--.|.|+++.|.+++...+..-|+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2222 555556666666777777777777776654443
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.74 E-value=22 Score=24.15 Aligned_cols=47 Identities=11% Similarity=-0.047 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc
Q 023910 137 CLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLKTE 186 (275)
Q Consensus 137 ~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~ 186 (275)
.++|..+|++..+. .| ++.....+-..+.+.|++++|+..|+.+...
T Consensus 25 ~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 68999999999884 44 5666666778899999999999999999754
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.84 E-value=62 Score=28.97 Aligned_cols=100 Identities=9% Similarity=-0.061 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhHhcC-CCCcC---HHHHHHHHHHHHhCCChhHHHHHHHHHH----hCCCCCC--HH
Q 023910 160 YADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPE---IQGFNALLKCLVGFKLRDLVVDCYELMK----TVGCEPD--RS 229 (275)
Q Consensus 160 yn~Li~~~~~~g~~~~A~~lf~~M~~~~-G~~pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~pd--~~ 229 (275)
...|.+.|...|++.+|.+++.++..+. |.... +..|..-+..|...+++.+|..++.... .....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3557788888999999999999987542 22222 3577788888999999999999988864 2333333 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 023910 230 SYRTVINGLEAMEEVAFSGIIRQDAFKYYG 259 (275)
Q Consensus 230 ty~~li~~~~~~g~~~~A~~l~~~m~~~~~ 259 (275)
-|...+..+...+++.+|...|.+..+.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 567778888888999999988888766554
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.77 E-value=46 Score=29.51 Aligned_cols=100 Identities=8% Similarity=-0.056 Sum_probs=50.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcC----CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH--hCCCCCCHHHHHHHH
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKTEN----SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK--TVGCEPDRSSYRTVI 235 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~~~----G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~pd~~ty~~li 235 (275)
-|.+.|...|++.+|.+++.++..+- +-.--...|-.-+..|...|++.++...+..-. ...+.|+...- ..|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHH
Confidence 35566666666666666666655421 001112345555556666666666666665544 12222222221 112
Q ss_pred HH-----HH-hcCCHHHHHHHHHHHHHHhCCcc
Q 023910 236 NG-----LE-AMEEVAFSGIIRQDAFKYYGDLE 262 (275)
Q Consensus 236 ~~-----~~-~~g~~~~A~~l~~~m~~~~~~~~ 262 (275)
+. +. ..+++.+|...|-+..+.|.+.+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~ 215 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVD 215 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccc
Confidence 21 22 45666666666666665565543
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.44 E-value=36 Score=30.27 Aligned_cols=59 Identities=5% Similarity=-0.208 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQ-WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~-g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
.+-+-|.+.|+.+.|.+.|.+++... +...-...|-.+|..+...+++..|....++.+
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45555555555555555555555420 111123444445555555555555555555543
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=67.12 E-value=43 Score=26.13 Aligned_cols=95 Identities=9% Similarity=-0.013 Sum_probs=63.5
Q ss_pred HHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-------CCCCHHHHHHHHHHH
Q 023910 166 VFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG-------CEPDRSSYRTVINGL 238 (275)
Q Consensus 166 ~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-------~~pd~~ty~~li~~~ 238 (275)
.--..|+++.|.++-+++ + +...|..|=....+.|+++-|.+.|....+.+ +.-|..-+..|.+..
T Consensus 14 LAL~lg~l~~A~e~a~~l--~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--N-----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344689999999998877 2 67899999999999999999999998776321 112444445555555
Q ss_pred HhcCCHHHHHHHH------HHHHHHhCCccchHHH
Q 023910 239 EAMEEVAFSGIIR------QDAFKYYGDLEFLEED 267 (275)
Q Consensus 239 ~~~g~~~~A~~l~------~~m~~~~~~~~~~~e~ 267 (275)
...|++..|...+ ++..+.|-+.+...|.
T Consensus 87 ~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA 121 (177)
T 3mkq_B 87 QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLA 121 (177)
T ss_dssp HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH
T ss_pred HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHH
Confidence 5666666665554 2233444444444443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=64.38 E-value=62 Score=31.33 Aligned_cols=124 Identities=11% Similarity=0.055 Sum_probs=77.2
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHhHHcCCCCCC--HHHHHHHHHHHHcCCCH-HHHHHHHHHhHhc-----CCCCcC-H--
Q 023910 126 AVLRELLRQNH-CLLALKVFEDIRKEQWYKPQ--VSLYADMIQVFGTNGLF-QHVEILYFYLKTE-----NSLEPE-I-- 193 (275)
Q Consensus 126 ~li~~~~~~g~-~~~A~~lf~~m~~~~g~~p~--~~tyn~Li~~~~~~g~~-~~A~~lf~~M~~~-----~G~~pd-~-- 193 (275)
.++.-+...++ .+.|..+|+++.++ .|. +....++|..+.+.++- -+|.++..+..+. ....+. .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34444444566 58899999999886 332 33334455555554432 2455555543211 011111 1
Q ss_pred -HHH---HHHHH----HHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 194 -QGF---NALLK----CLVGFKLRDLVVDCYELMKTVGCEP-DRSSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 194 -~ty---n~lI~----~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
... ..|+. -|...|+++-|+.+-+.-.. +.| +..||-.|...|...|+++.|.-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111 12333 24568999999999888653 455 5789999999999999999999888875
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.32 E-value=54 Score=33.23 Aligned_cols=121 Identities=7% Similarity=-0.110 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCc--------------
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEP-------------- 191 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~p-------------- 191 (275)
.++..+.+.+..+.|.++..+... |...-=.+=..|...|++++|.+.|++-. .|+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhcccccc
Confidence 567777788888888877665533 44443334466888999999999998752 12211
Q ss_pred ---------CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023910 192 ---------EIQGFNALLKCLVGFKLRDLVVDCYELMKT-VGCE-PDR--SSYRTVINGLEAMEEVAFSGIIRQDA 254 (275)
Q Consensus 192 ---------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~-pd~--~ty~~li~~~~~~g~~~~A~~l~~~m 254 (275)
-..=|.-++..+-+.|..+.+.++-..-.+ .+-. ++. ..|..+++++...|++++|...+-.+
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 112367788888889999988877655443 2212 222 25788999999999999998887553
No 244
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.36 E-value=43 Score=24.47 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHhHhc
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL--FQHVEILYFYLKTE 186 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~--~~~A~~lf~~M~~~ 186 (275)
...+|..|...|+.++|.+.++++... .+ ...+.+.++..++-+.+. .+.+..++..+..+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~ 72 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-cc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 446666676677777777777666431 11 134445555556665532 24555666666543
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.34 E-value=91 Score=27.59 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH---hCCCCCCHH----H
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK---TVGCEPDRS----S 230 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~---~~g~~pd~~----t 230 (275)
++..+-+.|.+.|+.++|.+.|.++... .+..--...|-.+|..+...+++..|...++... ..+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5666777888888888888888888742 1233345677777888888888888888877765 334334332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 231 YRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 231 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
|..++ +...+++.+|...|-+....|...
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhccCCcc
Confidence 23332 234677888888877766665543
No 246
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.82 E-value=25 Score=25.77 Aligned_cols=67 Identities=9% Similarity=-0.024 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCC
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL--RDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~--~~~A~~l~~~M~~~g~~pd 227 (275)
..+.+|.-|...|+.++|.+-++++... .--..+.+.++..++=+.++ .+.+..++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3678999999999999999999999632 22345667777778777653 5678899999988876544
No 247
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.91 E-value=35 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHhHhc
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL--FQHVEILYFYLKTE 186 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~--~~~A~~lf~~M~~~ 186 (275)
....+|..|...|+.++|.+.++++... .-...+++.++..++-+.+. -+.+..|+..+..+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~ 74 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 4457888888888888888888888432 12235556677777776533 34566777777654
No 248
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=55.54 E-value=66 Score=24.43 Aligned_cols=81 Identities=16% Similarity=0.006 Sum_probs=61.7
Q ss_pred cCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023910 169 TNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 169 ~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 248 (275)
.+|++.....-+-.+- . +..-++.-++.+...|+-|+-..++.++.. +.+|+....-.+-.+|.+.|+..+|.
T Consensus 73 ~C~NlKrVi~C~~~~n--~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--T----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GCSCTHHHHHHHHHTT--C----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHhc--c----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 4566666666665553 1 556678888999999999999999998532 44566667788999999999999999
Q ss_pred HHHHHHHH
Q 023910 249 IIRQDAFK 256 (275)
Q Consensus 249 ~l~~~m~~ 256 (275)
+++.+.-+
T Consensus 146 eLl~~AC~ 153 (172)
T 1wy6_A 146 TLLIEACK 153 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.00 E-value=1.2e+02 Score=27.12 Aligned_cols=28 Identities=7% Similarity=0.232 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 157 VSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 157 ~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
......++..|...|+++...+.+.-+.
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444455555555554444444443
No 250
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.70 E-value=33 Score=24.08 Aligned_cols=43 Identities=5% Similarity=0.016 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
|.+|.++...-|+.|+..+..-++..|...+. + |.++.++.+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmA 70 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIA 70 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHH
Confidence 44555555555666666666666665555553 2 5555555443
No 251
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.50 E-value=1.1e+02 Score=26.77 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=27.4
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCC---------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQW---------------YKPQVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g---------------~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
.......+.++|.+.+++...... ..+-+.....+...|...|+.++|..++++.+
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445566666666666654310 01123334444455555555555555555543
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=53.81 E-value=62 Score=23.67 Aligned_cols=82 Identities=10% Similarity=-0.137 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHhHhcCCCCc--CHHHHHHHHHHHHhCCChh
Q 023910 136 HCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQH---VEILYFYLKTENSLEP--EIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 136 ~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~---A~~lf~~M~~~~G~~p--d~~tyn~lI~~~~~~g~~~ 210 (275)
.+..+.+-|...... |. |+..+--.+--++.++....+ ++.++++..+. -.| .....-.|--||.+.|+++
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 344455566655553 33 666666666667888877665 88999988753 234 2333344556788999999
Q ss_pred HHHHHHHHHHh
Q 023910 211 LVVDCYELMKT 221 (275)
Q Consensus 211 ~A~~l~~~M~~ 221 (275)
+|.+.++.+.+
T Consensus 92 ~A~~~~~~lL~ 102 (126)
T 1nzn_A 92 KALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.91 E-value=59 Score=23.08 Aligned_cols=77 Identities=16% Similarity=0.052 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMI--QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li--~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
...++|.-|-+++... | + .-..+|| ..+...|++++|..+.+. -+.||...|-+|-. .|.|..+++
T Consensus 20 H~HqEA~tIAdwL~~~-~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~-----~c~pdlepw~ALce--~rlGl~s~l 87 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-G---Q-DEAARLIRISSLANQGRYQEALAFAHG-----NPWPALEPWFALCE--WHLGLGAAL 87 (115)
T ss_dssp TCHHHHHHHHHHHHHT-T---C-HHHHHHHHHHHHHHTTCHHHHHGGGTT-----CCCGGGHHHHHHHH--HHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhC-C---c-HHHHHHHHHHHHHcchhHHHHHHhcCC-----CCCchHHHHHHHHH--HhcccHHHH
Confidence 3567888888888774 3 2 2233344 456778889988877643 36788888877644 578888888
Q ss_pred HHHHHHHHhCC
Q 023910 213 VDCYELMKTVG 223 (275)
Q Consensus 213 ~~l~~~M~~~g 223 (275)
..-+..|..+|
T Consensus 88 e~rL~~la~sg 98 (115)
T 2uwj_G 88 DRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHhCC
Confidence 88887777665
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.87 E-value=61 Score=23.02 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhHHcCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHH
Q 023910 135 NHCLLALKVFEDIRKEQWYKPQVSLYADMI--QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLV 212 (275)
Q Consensus 135 g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li--~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A 212 (275)
...++|.-|-+++... | + .-..+|| ..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++
T Consensus 21 H~HqEA~tIAdwL~~~-~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~l 88 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-G---E-EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSAL 88 (116)
T ss_dssp TCHHHHHHHHHHHHHT-T---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHH
T ss_pred hHHHHHHHHHHHHHhC-C---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHH
Confidence 3567788888888774 3 2 2233344 4567788888888877443 5788888877644 567888888
Q ss_pred HHHHHHHHhCC
Q 023910 213 VDCYELMKTVG 223 (275)
Q Consensus 213 ~~l~~~M~~~g 223 (275)
..-+..|..+|
T Consensus 89 e~rL~~la~sg 99 (116)
T 2p58_C 89 ESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhCC
Confidence 87777776655
No 255
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=50.32 E-value=10 Score=23.98 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHhcCCCCcCHHHHHHHHHHH
Q 023910 174 QHVEILYFYLKTENSLEPEIQGFNALLKCL 203 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~ 203 (275)
++|++.|.+|.+++++.|+ -||...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHh
Confidence 5666677776666555444 4566666666
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=50.03 E-value=53 Score=27.55 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=81.1
Q ss_pred HHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhc-CCCCcCHHHHHHHHHHHHhCC
Q 023910 129 RELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTE-NSLEPEIQGFNALLKCLVGFK 207 (275)
Q Consensus 129 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~-~G~~pd~~tyn~lI~~~~~~g 207 (275)
..+.+.|++++|++-...-.+. -.-|...=..|+..+|-.|++++|..-++...+- ....|...+|-.+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH----
Confidence 4456889999999888887774 3557888888999999999999999877766431 12455566777777642
Q ss_pred ChhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhCC
Q 023910 208 LRDLVVDCYELMKTVGCE-----PDRSSYRTVINGLE--AMEEVAFSGIIRQDAFKYYGD 260 (275)
Q Consensus 208 ~~~~A~~l~~~M~~~g~~-----pd~~ty~~li~~~~--~~g~~~~A~~l~~~m~~~~~~ 260 (275)
..=.+...-+-. ....-...|+.++. ..|+.++|.++-.++.+.-|.
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111222222211 12224466777765 459999999999998877554
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=50.02 E-value=86 Score=24.17 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHh
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQV-------SLYADMIQVFGTNGLFQHVEILYFYL 183 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-------~tyn~Li~~~~~~g~~~~A~~lf~~M 183 (275)
+..=+..+...|.++.|.-+.+.+....+-.|++ .++..+-+++...|++.+|...|++-
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455666667777887777766654422234442 35566678888899999999888874
No 258
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.42 E-value=26 Score=26.59 Aligned_cols=67 Identities=9% Similarity=-0.024 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCC
Q 023910 159 LYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL--RDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 159 tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~--~~~A~~l~~~M~~~g~~pd 227 (275)
..+.+|.-|...|+.++|.+.++++... .--..+.+.++..++=+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4678999999999999999999999632 22345667777777777533 5678889999987776544
No 259
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=47.53 E-value=2.2e+02 Score=28.05 Aligned_cols=94 Identities=11% Similarity=-0.020 Sum_probs=58.2
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHhHHcC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 126 AVLRELLRQNH---CLLALKVFEDIRKEQ---WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 126 ~li~~~~~~g~---~~~A~~lf~~m~~~~---g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
.++...|+.|. .+.|.+.|++..... .+.||.... +-+.+- |.-++=..+++..++. .+..--+.+
T Consensus 685 ~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~---vy~~~~-g~~~~~~~l~~~y~~~----~~~~ek~~l 756 (897)
T 2xdt_A 685 QLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVGA-QSTEGWDFLYSKYQFS----LSSTEKSQI 756 (897)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHH---HHHHHT-TSHHHHHHHHHHHTTC----CCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhh---EEEEec-CCHHHHHHHHHHHHcc----CCHHHHHHH
Confidence 56778888887 567888998876632 245554321 111111 5555555555555433 244555788
Q ss_pred HHHHHhCCChhHHHHHHHHHHhC-CCCCC
Q 023910 200 LKCLVGFKLRDLVVDCYELMKTV-GCEPD 227 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~~-g~~pd 227 (275)
+.+++...+.+...++++...+. .+++.
T Consensus 757 l~aL~c~~~~~~l~~~L~~~~~~~~i~~q 785 (897)
T 2xdt_A 757 EFALCRTQNKEKLQWLLDESFKGDKIKTQ 785 (897)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSSSCGG
T ss_pred HHHhccCCCHHHHHHHHHHHhCCCCCcHH
Confidence 88888888888888888877753 34443
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=47.29 E-value=53 Score=27.52 Aligned_cols=71 Identities=10% Similarity=-0.058 Sum_probs=51.0
Q ss_pred HHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHH--hCCCCCCHHHHHHHHHH
Q 023910 165 QVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMK--TVGCEPDRSSYRTVING 237 (275)
Q Consensus 165 ~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~pd~~ty~~li~~ 237 (275)
....+.|.+++|++-...-.+. -+-|...=..++..+|-.|++++|..-++... +....|-..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 3456788888888877766543 46677777888888999999999988777766 23344555566666665
No 261
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=45.23 E-value=1.4e+02 Score=26.52 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=20.9
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHh
Q 023910 83 RGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD 123 (275)
Q Consensus 83 ~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (275)
.+...+++..++++...-...+-+.+.+++...+......|
T Consensus 206 ~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaSt~ad 246 (414)
T 3hwk_A 206 FGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTSTQSD 246 (414)
T ss_dssp HSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHTTTCC
T ss_pred cCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHhcCCC
Confidence 33344545555665555444433456666665555444443
No 262
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=41.71 E-value=1.8e+02 Score=25.38 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH-HHHHHHHhc------CCHHHHHHHHHHh
Q 023910 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI-AVLRELLRQ------NHCLLALKVFEDI 147 (275)
Q Consensus 84 ~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~-~li~~~~~~------g~~~~A~~lf~~m 147 (275)
++..++...++++...-...+-+.+.+++...+......|.. ++..+.+-. |-.+.+.++|+++
T Consensus 156 g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne~v~~~l~~i 226 (363)
T 2c6x_A 156 GEQPSEAKKKALETYMILATEHGMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLEDI 226 (363)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCccHHHHHHHHHHHcccCccCCchHHHHHHHHHh
Confidence 333444444555544433333345666666655544444433 333343332 3345555555443
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=41.04 E-value=1.1e+02 Score=22.70 Aligned_cols=61 Identities=11% Similarity=-0.022 Sum_probs=34.3
Q ss_pred HHHHHHhCCC---hhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 199 LLKCLVGFKL---RDLVVDCYELMKTVGCEP-D-RSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 199 lI~~~~~~g~---~~~A~~l~~~M~~~g~~p-d-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.--++++... ..+++.++++....+ | + ....=-|--|+.|.|++++|.++.+.+.+.-|.-
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3344555443 345666666666443 3 1 2222334445667777777777777777766654
No 264
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=39.55 E-value=2e+02 Score=25.45 Aligned_cols=38 Identities=8% Similarity=-0.174 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHH
Q 023910 85 RNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKF 122 (275)
Q Consensus 85 ~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~ 122 (275)
...+++..++++...-...+-+.+.+++...+......
T Consensus 195 ~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaSt~a 232 (404)
T 3o8j_A 195 EKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGS 232 (404)
T ss_dssp SCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHhcCC
Confidence 33444555566555544444445666666555544433
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=37.57 E-value=1.4e+02 Score=22.99 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCCCCHHHHHH--HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCH-------HHHHHHHHHHHhCCChhHHHHHHHHHH--
Q 023910 152 WYKPQVSLYAD--MIQVFGTNGLFQHVEILYFYLKTENSLEPEI-------QGFNALLKCLVGFKLRDLVVDCYELMK-- 220 (275)
Q Consensus 152 g~~p~~~tyn~--Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~-------~tyn~lI~~~~~~g~~~~A~~l~~~M~-- 220 (275)
|+.|....|+. =+..+...|.++.|+-+.+.+..-.+..||+ .++.-+-+++...|.+.+|...|++-.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 55555444433 3566778899999998887754321233442 356667788999999999999999842
Q ss_pred -h-----CC---------CC------CC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023910 221 -T-----VG---------CE------PD--RSSYRTVINGLEAMEEVAFSGIIRQD 253 (275)
Q Consensus 221 -~-----~g---------~~------pd--~~ty~~li~~~~~~g~~~~A~~l~~~ 253 (275)
+ .. -. +. ..-|. +-.+|.+.++.++|..+++.
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhc
Confidence 1 10 00 11 23355 66678899999999988765
No 266
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.19 E-value=1.2e+02 Score=21.93 Aligned_cols=40 Identities=5% Similarity=-0.175 Sum_probs=16.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023910 216 YELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAF 255 (275)
Q Consensus 216 ~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~ 255 (275)
|+.+.+..+.|+....-.-|......++++.|.++..++.
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334444443333333333444445555555444433
No 267
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.33 E-value=1.7e+02 Score=23.66 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcC-CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQ-WYKPQ----VSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFN 197 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~-g~~p~----~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn 197 (275)
+...-|+.+.-..++++|..+.++.++.. +.++. ...-...|+.=.....-.-+..|.+++.. .++...-.
T Consensus 20 ~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r 95 (235)
T 2d2s_A 20 EGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLK 95 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 45577888999999999999999887621 22221 11112223333333333445555555532 45666677
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh
Q 023910 198 ALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 198 ~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
..+..+.+-|+.++|.++|=+...
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHH
Confidence 778888899999999998877653
No 268
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.16 E-value=80 Score=23.92 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcC-CCCcCHHHHHHHHHHHHhCCCh
Q 023910 138 LLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTEN-SLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 138 ~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~-G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
+.+.+-+.+..++.|++++.. =-.+++.+...+..-.|.++++.++.+. +...+..|----|+.+...|.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444444333335555443 2334444555545555555555554320 2233444443344444444443
No 269
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=35.68 E-value=2.2e+02 Score=24.83 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH-HHHHHHHhc------CCHHHHHHHHHHhH
Q 023910 86 NLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI-AVLRELLRQ------NHCLLALKVFEDIR 148 (275)
Q Consensus 86 ~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~-~li~~~~~~------g~~~~A~~lf~~m~ 148 (275)
..++...++++...-...+-+.+.+++...+......|.. ++..+.+-. |-.+.+.++++++.
T Consensus 167 ~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne~v~~~l~~i~ 236 (378)
T 1a59_A 167 EAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIG 236 (378)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCchHHHHHHHHHHh
Confidence 3444555555555544444455666776665544444433 344444332 33455666666653
No 270
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.67 E-value=3.3e+02 Score=26.75 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=51.9
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHhHHc---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHH
Q 023910 126 AVLRELLRQNH---CLLALKVFEDIRKE---QWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNAL 199 (275)
Q Consensus 126 ~li~~~~~~g~---~~~A~~lf~~m~~~---~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~l 199 (275)
.++...|+.|. .+.|.+.|+..... ..+.||.... ....-.+.|.-++-..+++..+... +..--+.+
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~--vy~~~~~~g~~~~~~~l~~~~~~~~----~~~ek~~l 764 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST--IYCNAIAQGGQDQWDFAWGQLQQAQ----LVNEADKL 764 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHH--HHHHHHHHSCHHHHHHHHHHHHHCC----SHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHccC----CHHHHHHH
Confidence 46777788876 45788888887552 1256764321 2222234465555555666665432 33344566
Q ss_pred HHHHHhCCChhHHHHHHHHHHh
Q 023910 200 LKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 200 I~~~~~~g~~~~A~~l~~~M~~ 221 (275)
+.+++...+.+...++++...+
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHHHhC
Confidence 6777666666666666665553
No 271
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=35.25 E-value=15 Score=27.65 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHhcCCCCc---CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023910 174 QHVEILYFYLKTENSLEP---EIQGFNALLKCLVGFKLRDLVVDCYELMK 220 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~p---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 220 (275)
+.|.++.+......|+.| +..++..++....+.|-+++. +.+-.|.
T Consensus 55 Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~ 103 (146)
T 1jog_A 55 ELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYR 103 (146)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 334444443333234443 345566666666666655544 4444444
No 272
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.40 E-value=97 Score=19.97 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCcCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 188 SLEPEIQGFNALLKCLVGFK-LRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 188 G~~pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
|++++..- -.++..+...+ ..-.+.++++.+.+.+...+..|---.|+.+...|.+
T Consensus 12 g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 12 GLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp TCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 55555544 34445554443 4455666666666555455555555556666665543
No 273
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=33.39 E-value=2.5e+02 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=20.4
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHh
Q 023910 83 RGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD 123 (275)
Q Consensus 83 ~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (275)
.++..+++..++++...-...+-+.+.+++...+......|
T Consensus 164 ~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaSt~ad 204 (375)
T 3tqg_A 164 LGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSATLSD 204 (375)
T ss_dssp HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccCCC
Confidence 33344545555655554433333456666665555444333
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.82 E-value=1.5e+02 Score=22.12 Aligned_cols=71 Identities=13% Similarity=-0.031 Sum_probs=36.2
Q ss_pred CcCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 190 EPEIQGFNALLKCLVGFKL---RDLVVDCYELMKTVGCEPDRSSY-RTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 190 ~pd~~tyn~lI~~~~~~g~---~~~A~~l~~~M~~~g~~pd~~ty-~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
.|+..|-=..--++++... ..+++.++++....+-. +..-| =-|--|+.|.|++++|.++.+.+.+.-|.-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3444443344445555543 33466666666542210 12221 123345667777777777777776666653
No 275
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=32.76 E-value=2.1e+02 Score=24.92 Aligned_cols=41 Identities=10% Similarity=-0.155 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhH
Q 023910 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDM 124 (275)
Q Consensus 84 ~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (275)
+...++...++++...-...+-+.+.+++...+......|.
T Consensus 162 g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aSt~~d~ 202 (371)
T 1aj8_A 162 GEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDY 202 (371)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCH
T ss_pred CCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhhcCCcH
Confidence 33344455555555554444445566677665554444443
No 276
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=32.73 E-value=1.6e+02 Score=22.41 Aligned_cols=56 Identities=4% Similarity=-0.150 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 023910 171 GLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDR 228 (275)
Q Consensus 171 g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 228 (275)
+++++|.++|+.+.+. .-+. ...|-.--.-=.+.|++..|..++..-...+-+|..
T Consensus 74 ~D~d~aR~vy~~a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 6777777777777542 1222 444444444445678888888888877766655543
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.38 E-value=1.6e+02 Score=25.58 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCC
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL--RDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~--~~~A~~l~~~M~~~g~~pd 227 (275)
...+.+|.-|...|+.++|.+.++++... .+.+ .+.+.++..++=+.++ .+.+..++..+...|+-+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p-~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCT-TCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCC-cchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 44678888888888899998888888632 2233 4446666666665443 4567788888887776544
No 278
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=30.84 E-value=1.3e+02 Score=29.00 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhH
Q 023910 131 LLRQNHCLLALKVFEDIRKEQWYKP-QVSLYADMIQVFGTNGLFQHVEILYFYLK 184 (275)
Q Consensus 131 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~tyn~Li~~~~~~g~~~~A~~lf~~M~ 184 (275)
|...|+++.|+++-++-..- .| +-.+|-.|...|...|+++.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44568999999999998773 45 47899999999999999999999999874
No 279
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=30.24 E-value=2.6e+02 Score=24.46 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH-HHHHHHHhc------CCHHHHHHHHHHh
Q 023910 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI-AVLRELLRQ------NHCLLALKVFEDI 147 (275)
Q Consensus 84 ~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~-~li~~~~~~------g~~~~A~~lf~~m 147 (275)
++..++...++++...-...+-+.+.+++...+......|.. ++..+.+-. |-.+.+.++|+++
T Consensus 162 g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~v~~ml~ei 232 (377)
T 1o7x_A 162 AREPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEI 232 (377)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCcHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Confidence 333444555555555544444455667776665544444433 344344332 2234455555444
No 280
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=30.00 E-value=2.8e+02 Score=24.18 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=32.6
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH-HHHHHHHhc------CCHHHHHHHHHHh
Q 023910 83 RGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI-AVLRELLRQ------NHCLLALKVFEDI 147 (275)
Q Consensus 83 ~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~-~li~~~~~~------g~~~~A~~lf~~m 147 (275)
.+...++...++++...-...+-+.+.+++...+......|.. ++..+.+-. |-.+.+.++++++
T Consensus 158 ~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~v~~ml~~i 229 (373)
T 1vgp_A 158 YGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEI 229 (373)
T ss_dssp HSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCCCHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHhcCccHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHh
Confidence 3334454556666666655555456677777665544444433 333333322 3344555555443
No 281
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=29.84 E-value=2.4e+02 Score=24.67 Aligned_cols=42 Identities=14% Similarity=-0.032 Sum_probs=22.7
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHh
Q 023910 82 QRGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD 123 (275)
Q Consensus 82 ~~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (275)
+.++..++...++++...-...+-+.+.+++...+......|
T Consensus 165 l~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aSt~~d 206 (385)
T 2ifc_A 165 AFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVSTLSD 206 (385)
T ss_dssp HHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHTTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHhcCCc
Confidence 333344555556666655454444556677776655444444
No 282
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=29.83 E-value=2.6e+02 Score=24.44 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=33.3
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH-HHHHHHHhc------CCHHHHHHHHHHh
Q 023910 83 RGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI-AVLRELLRQ------NHCLLALKVFEDI 147 (275)
Q Consensus 83 ~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~-~li~~~~~~------g~~~~A~~lf~~m 147 (275)
.++..++...++++...-...+-+.+.+++...+......|.. ++..+.+-. |-.+.+.++|+++
T Consensus 162 ~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~v~~ml~ei 233 (378)
T 1vgm_A 162 FGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEI 233 (378)
T ss_dssp HSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCChHHHHHHHHHHh
Confidence 3334455556666666655554456677777665554444433 343344332 2244455555544
No 283
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.27 E-value=1.7e+02 Score=21.46 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 152 g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
|++++..= -.+++.+...+ .-.|.++++.++.+ +...+..|----|+.+...|.
T Consensus 14 g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 14 GYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp TCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCc
Confidence 55554431 22333333333 34555555555433 344444444444444444443
No 284
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.01 E-value=38 Score=22.80 Aligned_cols=35 Identities=9% Similarity=-0.072 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 173 FQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 173 ~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
.++|...|.+|..+.||.|+ .||...|...+...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCc
Confidence 46778888888877776666 456666666555443
No 285
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.33 E-value=46 Score=20.82 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHhHhcCCCCcC
Q 023910 170 NGLFQHVEILYFYLKTENSLEPE 192 (275)
Q Consensus 170 ~g~~~~A~~lf~~M~~~~G~~pd 192 (275)
.-+++.|...|.+++....++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 34667777777777654345554
No 286
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=28.10 E-value=3e+02 Score=24.00 Aligned_cols=41 Identities=15% Similarity=-0.001 Sum_probs=21.1
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHh
Q 023910 83 RGRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFD 123 (275)
Q Consensus 83 ~~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (275)
.+...++...++++...-...+-+.+.+++...+......|
T Consensus 162 ~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aSt~~d 202 (377)
T 1iom_A 162 NGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETD 202 (377)
T ss_dssp HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhhcCCc
Confidence 33334445555555555444444556677766554444444
No 287
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.16 E-value=1.6e+02 Score=25.21 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhHhcCCCCcCHHH---HHH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNG-LFQHVEILYFYLKTENSLEPEIQG---FNA 198 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g-~~~~A~~lf~~M~~~~G~~pd~~t---yn~ 198 (275)
...++|..|...|+.++|.+.++++... .+. ..+.+..+..++-++. .-+.+..++..+.++ |+-+.... |..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~-~~is~~~~~~Gf~~ 89 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASP-SLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCA-GHLSTAQYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG-GGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 3457899999999999999999998542 222 3445556666665543 234566788887754 44333222 222
Q ss_pred HHHHHHhC-CChhHHHHHHHHHH
Q 023910 199 LLKCLVGF-KLRDLVVDCYELMK 220 (275)
Q Consensus 199 lI~~~~~~-g~~~~A~~l~~~M~ 220 (275)
++..+-.. =++-.|...+.++.
T Consensus 90 ~~~~l~Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 90 ILELAEDMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHhhChHhhcCccchHHHHHHHH
Confidence 33222221 25566777777775
No 288
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.84 E-value=1.8e+02 Score=20.91 Aligned_cols=42 Identities=17% Similarity=-0.054 Sum_probs=31.0
Q ss_pred HHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 023910 179 LYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKT 221 (275)
Q Consensus 179 lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 221 (275)
||+.+... .+.|++..--.-|..+...++++.|..+.-.+..
T Consensus 48 LfdkLn~~-~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGG-KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66667654 5777777666666667778899999998887764
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.96 E-value=2.7e+02 Score=24.11 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHhHhcCCCCcCH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL--FQHVEILYFYLKTENSLEPEI 193 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~--~~~A~~lf~~M~~~~G~~pd~ 193 (275)
....+|..|...|+.++|.+.++++..- .+. ..+.+.++..++-+.++ .+...+++..+..+ |+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p-~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCT-TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCC-cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHH
Confidence 3458899999999999999999999652 233 35567788888887654 45688899888765 554443
No 290
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.69 E-value=1.6e+02 Score=23.89 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHhcCCCCcCHH------HHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 023910 174 QHVEILYFYLKTENSLEPEIQ------GFNALLKCLVGFKLRDLVVDCYELMKTV 222 (275)
Q Consensus 174 ~~A~~lf~~M~~~~G~~pd~~------tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 222 (275)
+-|+.+|+.++++..+..+.+ .=-..+-.|.+.|.+++|.++|+.....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567777777765531111110 1113445677788888888888776643
No 291
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=24.05 E-value=2.3e+02 Score=21.14 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=36.5
Q ss_pred ChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCc
Q 023910 208 LRDLVVDCYELMK----TVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFKYYGDL 261 (275)
Q Consensus 208 ~~~~A~~l~~~M~----~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 261 (275)
+++.+..+...++ .-|.. .......-|..+++.|+.+.+..++..+...|..+
T Consensus 70 D~~~l~~~aH~LKGss~~lGa~-~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v 126 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGAQ-RVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLV 126 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 6777777777766 22332 22334556677888999999999999988888764
No 292
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.80 E-value=51 Score=21.48 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 172 LFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 172 ~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
..++|...|.+|..+.+|.|+ .||...+...+...+
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDPR 48 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCcc
Confidence 457888999999888777665 467777776665443
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.35 E-value=2.9e+02 Score=22.21 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHh
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKT 185 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~ 185 (275)
..|..-.....-..+..+.+++.. .++...-...+..+.+-|+.++|.++|=+...
T Consensus 64 ~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 64 NLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 334444444445556666666622 34566677777888888999999888877653
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.03 E-value=2.3e+02 Score=20.85 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=18.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
++..+...+..-.|.++++.++.+ +...+..|---.|+.+...|.
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 333333333444455555555433 333344443333344444443
No 295
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=22.92 E-value=2.1e+02 Score=20.31 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023910 171 GLFQHVEILYFYLKTENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 171 g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~--~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 248 (275)
...++|..+-+-+... | + .--.+||. .+...|++++|..+.+.+ +.||...|-+|..+ |.|..+++.
T Consensus 21 H~HqEA~tIAdwL~~~-~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-G---E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHHT-T---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC-C---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHH
Confidence 3567787777777644 3 2 33334444 466789999999987654 58999999888765 788888888
Q ss_pred HHHHHH
Q 023910 249 IIRQDA 254 (275)
Q Consensus 249 ~l~~~m 254 (275)
.-+.++
T Consensus 90 ~rL~~l 95 (116)
T 2p58_C 90 SRLNRL 95 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777554
No 296
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.86 E-value=1.5e+02 Score=21.16 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=23.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCCh
Q 023910 163 MIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLR 209 (275)
Q Consensus 163 Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~ 209 (275)
+++.+...+..-.|.++++.++++ +...+..|---.|+.+...|.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCE
Confidence 444444445555666666666543 3444555544444555555443
No 297
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.78 E-value=2.1e+02 Score=20.27 Aligned_cols=74 Identities=7% Similarity=-0.115 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCcCHHHHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023910 171 GLFQHVEILYFYLKTENSLEPEIQGFNALLK--CLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSG 248 (275)
Q Consensus 171 g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~--~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 248 (275)
...++|..+-+-+... | + .--.+||. .+...|++++|..+.+. -+.||...|-+|..+ |.|..+++.
T Consensus 20 H~HqEA~tIAdwL~~~-~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALce~--rlGl~s~le 88 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-G---Q-DEAARLIRISSLANQGRYQEALAFAHG----NPWPALEPWFALCEW--HLGLGAALD 88 (115)
T ss_dssp TCHHHHHHHHHHHHHT-T---C-HHHHHHHHHHHHHHTTCHHHHHGGGTT----CCCGGGHHHHHHHHH--HTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC-C---c-HHHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHHHH--hcccHHHHH
Confidence 3467777777777644 3 2 33334444 46678999999988664 358999999888765 789999888
Q ss_pred HHHHHHH
Q 023910 249 IIRQDAF 255 (275)
Q Consensus 249 ~l~~~m~ 255 (275)
.-+.++.
T Consensus 89 ~rL~~la 95 (115)
T 2uwj_G 89 RRLAGLG 95 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8775554
No 298
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.74 E-value=65 Score=24.65 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhH
Q 023910 123 DMIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL-FQHVEILYFYLK 184 (275)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~-~~~A~~lf~~M~ 184 (275)
...++|+.|...|+.++|...++++... .+.| .+.-..+-.++-++.. -+.+-.|+..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p-~~~~-~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EMKS-GVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCS-GGGG-HHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc-ccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567888888888888888888887542 2332 2223333334433322 234556666663
No 299
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=22.54 E-value=4e+02 Score=23.51 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhcHHhHH-HHHHHHHhc------CCHHHHHHHHHHh
Q 023910 84 GRNLSIEAIQAVQHLKRAHLHSNPLDHVFNSKFRRLLKFDMI-AVLRELLRQ------NHCLLALKVFEDI 147 (275)
Q Consensus 84 ~~~l~~ea~~~~~~m~~~~~~~~~~~~~~~~~~~~l~~~~~~-~li~~~~~~------g~~~~A~~lf~~m 147 (275)
+...++...++++...-...+-+.+.+++...+......|.. ++..+.+-. |-.+.+.++++++
T Consensus 193 g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~v~~ml~ei 263 (409)
T 2ibp_A 193 GREPDPLASRGIDLYLILHADHEVPASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAVRNYLEI 263 (409)
T ss_dssp SSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCchHHHHHHHHHh
Confidence 333444555666666555554456777777665544444433 333333332 2244455555444
No 300
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=22.50 E-value=1.9e+02 Score=25.30 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHcCCCH--HHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 023910 156 QVSLYADMIQVFGTNGLF--QHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVG 223 (275)
Q Consensus 156 ~~~tyn~Li~~~~~~g~~--~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g 223 (275)
+..||-.||+-+....++ ++|..+++.|. + |-.+|...=.-|+..+.|.-..+|...+.+-|.+.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~-~-G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIM-T-GNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHH-T-TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH-C-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 345788899888877765 68899999987 3 666777666666666777777888888888887543
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.44 E-value=2.3e+02 Score=20.65 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC
Q 023910 152 WYKPQVSLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL 208 (275)
Q Consensus 152 g~~p~~~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~ 208 (275)
|++++..= -.+++.+...+..-.|.++++.++.+ +...+..|---.|+.+...|.
T Consensus 17 g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 17 GVRITPQR-HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp TCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 44444332 22333333333344455555555433 333344444444444444443
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.18 E-value=1.5e+02 Score=25.10 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHhHhcCCCCcC
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGL--FQHVEILYFYLKTENSLEPE 192 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~--~~~A~~lf~~M~~~~G~~pd 192 (275)
...+|..|...|+.++|.+.++++... .+. ..+.+.++..++-+.+. .+....|+..+.++ |+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG-GGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC-cch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 457899999999999999999999542 222 35667778888887644 45677888888765 44444
No 303
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.95 E-value=2.3e+02 Score=25.50 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC--------CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHH-hCC
Q 023910 194 QGFNALLKCLVGFKLRDLVVDCYELMKTVGCEP--------DRSSYR-TVINGLEAMEEVAFSGIIRQDAFKY-YGD 260 (275)
Q Consensus 194 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~p--------d~~ty~-~li~~~~~~g~~~~A~~l~~~m~~~-~~~ 260 (275)
...|.|++.|-+.|+++-+..++..+...+..| ..+||. -+-..++..+++.+|.+.+.+..+. .+.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 456778888888888888888888887655532 344554 2233345678888888888887776 553
No 304
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.90 E-value=1.1e+02 Score=19.68 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 023910 195 GFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAM 241 (275)
Q Consensus 195 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~ 241 (275)
.++.+++.++...-+++++..+++..+.| ..+..+|---+..++|.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45667777777777777777777777665 34555666556666553
No 305
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.43 E-value=84 Score=27.42 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhHhcCCCCc
Q 023910 124 MIAVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSLYADMIQVFGTNGLF-QHVEILYFYLKTENSLEP 191 (275)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~tyn~Li~~~~~~g~~-~~A~~lf~~M~~~~G~~p 191 (275)
..++|..|...|++++|...++++..-..+. ..+.+..+..++-++..- +.+-.++..+..+ |+-+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~-~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~-~~ls 81 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFL-PEMLSKVIILSLDRSDEDKEKASSLISLLKQE-GIAT 81 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGH-HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT-TSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhH-HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHC-CCCC
Confidence 4588999999999999999999984310011 144555555555554222 4455677777654 4433
No 306
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.42 E-value=82 Score=24.33 Aligned_cols=121 Identities=7% Similarity=-0.059 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHcCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHH--HHHHHH
Q 023910 126 AVLRELLRQNHCLLALKVFEDIRKEQWYKPQVSL--YADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQG--FNALLK 201 (275)
Q Consensus 126 ~li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t--yn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~t--yn~lI~ 201 (275)
+.+...++.|+.+....+++.+.+. |..++... -.+.+...+..|+.+-+..++ + .|..|+... -.+.+.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~-~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLV----T-AGASPMALDRHGQTAAH 84 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH----H-TTCCTTCCCTTSCCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHHHHHHH----H-cCCCccccCCCCCCHHH
Confidence 3455667889999888888877763 66665432 224455556677776554444 2 255555432 124455
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 023910 202 CLVGFKLRDLVVDCYELMKTVGCEPDRS--SYRTVINGLEAMEEVAFSGIIRQ 252 (275)
Q Consensus 202 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~li~~~~~~g~~~~A~~l~~ 252 (275)
..+..|..+-+..+++.-...++.++.. .-.+.+...++.|..+-...+++
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 137 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence 5567788766665555433333333322 22345555667777765554443
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.38 E-value=2.1e+02 Score=24.12 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCC
Q 023910 158 SLYADMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKL--RDLVVDCYELMKTVGCEPD 227 (275)
Q Consensus 158 ~tyn~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~--~~~A~~l~~~M~~~g~~pd 227 (275)
...+.+|.-|...|+.++|.+.++++... .+. ..+.+.++..+.=+.++ .+.+..++..+.+.|+-+.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCG-GGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 44678899999999999999999999632 122 34556666666666543 4567788888886666543
No 308
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.37 E-value=1.3e+02 Score=22.00 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhHhcCCCCcCHHHHHHHHHHHHhCCChh
Q 023910 162 DMIQVFGTNGLFQHVEILYFYLKTENSLEPEIQGFNALLKCLVGFKLRD 210 (275)
Q Consensus 162 ~Li~~~~~~g~~~~A~~lf~~M~~~~G~~pd~~tyn~lI~~~~~~g~~~ 210 (275)
.+++.+...+..-.|.++++.++.+ +-..+..|---.|+.+...|.+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCEE
Confidence 4555565555566677777777654 45556666555556666555543
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.29 E-value=2.2e+02 Score=20.81 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 187 NSLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 187 ~G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
.|++++..= ..++..+...+ .-.|.++++.+++.+-..+..|.=--|+.+...|-+
T Consensus 13 ~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 13 RGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 466665542 23334444444 556777777777665555555544445556666543
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.51 E-value=2.6e+02 Score=20.53 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=27.2
Q ss_pred CCCcCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 023910 188 SLEPEIQGFNALLKCLVGFKLRDLVVDCYELMKTVGCEPDRSSYRTVINGLEAMEEV 244 (275)
Q Consensus 188 G~~pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~ 244 (275)
|++++..= -.++..+...+..-.|.++++.+++.+-..+..|.=-.|+.+...|.+
T Consensus 22 g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 22 GLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp C--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 55544432 233444444445556666666666554444444444445555555543
No 311
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=20.51 E-value=1.9e+02 Score=19.22 Aligned_cols=43 Identities=5% Similarity=0.016 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023910 212 VVDCYELMKTVGCEPDRSSYRTVINGLEAMEEVAFSGIIRQDAFK 256 (275)
Q Consensus 212 A~~l~~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 256 (275)
+.++-+++..-|+.|+.....-++..|...+. + +.++..+...
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~-~-~~e~V~ew~A 47 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIA 47 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCC-C-HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-C-HHHHHHHHHH
Confidence 44566666677887777777777776666664 2 6666666443
Done!