BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023911
         (275 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
 pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
           Complexed With A Magnesium Ion
          Length = 194

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEE 141
           ++AAVL+ L      D RV+LT RSS + TH G+I+ PGG  + G+      A REA+EE
Sbjct: 34  RRAAVLVALTR--EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT-QAALREAQEE 90

Query: 142 IGXXXXXXXXXXXXXXFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201
           +                 +     V PV+G ++ +   T    P EV ++    L     
Sbjct: 91  VALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTP-EVAQIITPTLAELRA 149

Query: 202 DENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGIL 241
               R+      G +  L    Y Y  +   IWG+TA +L
Sbjct: 150 VPLVRERRTLPDGTEVPL----YRYPWRGLDIWGMTARVL 185


>pdb|3QSJ|A Chain A, Crystal Structure Of Nudix Hydrolase From Alicyclobacillus
           Acidocaldarius
          Length = 232

 Score = 34.7 bits (78), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 19/81 (23%)

Query: 82  KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGD-------------- 127
           +KAA L+ + +G   D+ V++ +R+       G ++ PGG A+  D              
Sbjct: 8   RKAATLVVIRDGANKDIEVLVVRRAKTXRFLPGFVAFPGGAADPSDAEXAKRAFGRPVCA 67

Query: 128 RDDGD-----TATREAKEEIG 143
            DD D     TA RE  EEIG
Sbjct: 68  EDDDDPALAVTALRETAEEIG 88


>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
           Pyogenes
          Length = 254

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 225 EYENKKYLIWGLTAGI---LIRAASVVYQKPPAFIEQNPKFKFPT 266
           E EN  Y++ GL + +   ++  A++  QK   FI  NP    PT
Sbjct: 109 ELENPAYVVVGLDSQVTYEMLAIATLAIQKGALFIGTNPDLNIPT 153


>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
          Length = 592

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 188 VEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWG---LTAGILIRA 244
           +EEV  A LE   + E R +  R  + +   +H  +  Y+    L+W    + AG+L +A
Sbjct: 200 IEEVLHA-LE---RGELREEVNRILLAQMATMHALNARYD---LLVWESDIVRAGLLQKA 252

Query: 245 ASVVYQKPPAFIEQNPKFKFPTVINKDTIVP 275
            +++ Q P  F  +  K+    V++   ++P
Sbjct: 253 LALLEQSPHVFRPREGKYAGALVMDASPVIP 283


>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
           Mazei Go1
 pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
           Mazei Go1
          Length = 153

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 101 ILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG 143
           +L +RS    T++G+  LPGGK    D    +   RE  EE G
Sbjct: 23  LLLRRSENSRTNAGKWDLPGGKVNP-DESLKEGVAREVWEETG 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,573,506
Number of Sequences: 62578
Number of extensions: 288259
Number of successful extensions: 669
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 14
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)