Query 023911
Match_columns 275
No_of_seqs 437 out of 2405
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02709 nudix hydrolase 100.0 5.5E-42 1.2E-46 303.1 24.0 186 80-265 30-220 (222)
2 PRK10707 putative NUDIX hydrol 100.0 2.2E-34 4.7E-39 250.5 22.1 161 80-248 28-188 (190)
3 KOG3069 Peroxisomal NUDIX hydr 100.0 5.3E-35 1.1E-39 256.3 8.6 222 30-264 2-227 (246)
4 cd03426 CoAse Coenzyme A pyrop 100.0 1.3E-30 2.7E-35 219.8 18.2 156 82-244 1-157 (157)
5 cd04692 Nudix_Hydrolase_33 Mem 99.8 8.9E-19 1.9E-23 145.0 13.0 119 83-203 2-128 (144)
6 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.7E-18 3.7E-23 140.2 13.1 110 85-202 2-112 (126)
7 cd04691 Nudix_Hydrolase_32 Mem 99.8 4.7E-18 1E-22 136.0 13.3 97 99-202 12-108 (117)
8 cd04682 Nudix_Hydrolase_23 Mem 99.8 4.4E-18 9.6E-23 136.7 12.4 102 99-205 13-117 (122)
9 cd04679 Nudix_Hydrolase_20 Mem 99.8 6.2E-18 1.3E-22 136.1 13.3 111 84-202 3-115 (125)
10 cd04681 Nudix_Hydrolase_22 Mem 99.8 5.5E-18 1.2E-22 137.0 12.5 108 84-200 2-113 (130)
11 cd04693 Nudix_Hydrolase_34 Mem 99.8 1.1E-17 2.3E-22 135.2 11.8 110 85-203 2-114 (127)
12 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1.4E-17 3.1E-22 135.8 12.6 114 84-203 3-116 (137)
13 cd04694 Nudix_Hydrolase_35 Mem 99.7 4.4E-17 9.5E-22 135.8 13.7 115 84-202 2-131 (143)
14 cd04670 Nudix_Hydrolase_12 Mem 99.7 5.8E-17 1.3E-21 130.8 14.0 112 84-203 3-114 (127)
15 cd03429 NADH_pyrophosphatase N 99.7 2.3E-17 4.9E-22 134.8 11.4 106 85-202 2-107 (131)
16 cd04683 Nudix_Hydrolase_24 Mem 99.7 5.5E-17 1.2E-21 129.3 12.9 110 85-202 2-114 (120)
17 cd03671 Ap4A_hydrolase_plant_l 99.7 6.5E-17 1.4E-21 134.4 13.7 112 84-203 4-132 (147)
18 cd04678 Nudix_Hydrolase_19 Mem 99.7 7.6E-17 1.6E-21 130.3 13.8 115 83-203 2-118 (129)
19 cd03673 Ap6A_hydrolase Diadeno 99.7 4E-17 8.7E-22 131.2 12.1 111 84-203 3-117 (131)
20 PRK15472 nucleoside triphospha 99.7 6.5E-17 1.4E-21 133.1 13.3 111 86-202 6-125 (141)
21 cd02885 IPP_Isomerase Isopente 99.7 2.6E-17 5.6E-22 139.6 11.0 113 83-203 30-149 (165)
22 PLN02325 nudix hydrolase 99.7 1.2E-16 2.6E-21 133.0 14.8 114 82-202 8-125 (144)
23 cd04664 Nudix_Hydrolase_7 Memb 99.7 5.3E-17 1.2E-21 131.3 12.3 109 86-202 4-118 (129)
24 cd03676 Nudix_hydrolase_3 Memb 99.7 5.6E-17 1.2E-21 139.3 12.9 122 78-202 27-158 (180)
25 TIGR02150 IPP_isom_1 isopenten 99.7 3.4E-17 7.3E-22 138.2 11.2 116 79-204 23-144 (158)
26 PRK15393 NUDIX hydrolase YfcD; 99.7 7.6E-17 1.6E-21 139.1 13.5 115 80-202 34-149 (180)
27 PRK15434 GDP-mannose mannosyl 99.7 9.5E-17 2.1E-21 136.1 13.6 113 84-205 18-140 (159)
28 cd04673 Nudix_Hydrolase_15 Mem 99.7 8.8E-17 1.9E-21 127.9 12.3 108 86-204 3-116 (122)
29 cd04680 Nudix_Hydrolase_21 Mem 99.7 6.9E-17 1.5E-21 128.3 11.6 105 86-202 3-108 (120)
30 cd04684 Nudix_Hydrolase_25 Con 99.7 1.3E-16 2.8E-21 127.8 12.9 110 86-203 3-118 (128)
31 cd03430 GDPMH GDP-mannose glyc 99.7 1.9E-16 4.1E-21 131.7 14.1 112 83-203 12-133 (144)
32 PF00293 NUDIX: NUDIX domain; 99.7 6.9E-17 1.5E-21 129.5 9.7 117 83-204 2-121 (134)
33 PRK03759 isopentenyl-diphospha 99.7 1.6E-16 3.6E-21 137.2 12.4 116 80-203 31-153 (184)
34 cd04695 Nudix_Hydrolase_36 Mem 99.7 1.4E-16 3E-21 129.7 11.1 101 98-205 14-117 (131)
35 cd03428 Ap4A_hydrolase_human_l 99.7 1.9E-16 4.2E-21 127.7 11.3 109 84-203 4-116 (130)
36 cd04700 DR1025_like DR1025 fro 99.7 3.7E-16 8E-21 129.4 13.0 113 84-204 14-127 (142)
37 cd04696 Nudix_Hydrolase_37 Mem 99.7 3.2E-16 7E-21 126.2 12.2 107 85-203 4-115 (125)
38 cd03674 Nudix_Hydrolase_1 Memb 99.7 4.5E-16 9.9E-21 128.0 13.0 110 83-202 2-123 (138)
39 cd03427 MTH1 MutT homolog-1 (M 99.7 4.2E-16 9E-21 127.0 11.9 97 99-202 13-111 (137)
40 cd04677 Nudix_Hydrolase_18 Mem 99.7 4.2E-16 9.1E-21 125.9 11.7 109 82-202 6-122 (132)
41 PRK09438 nudB dihydroneopterin 99.7 5.4E-16 1.2E-20 128.7 12.1 109 83-203 7-130 (148)
42 PRK11762 nudE adenosine nucleo 99.7 9.6E-16 2.1E-20 132.6 13.6 112 84-202 48-159 (185)
43 cd04699 Nudix_Hydrolase_39 Mem 99.7 5.4E-16 1.2E-20 124.3 11.2 108 85-200 3-112 (129)
44 COG1051 ADP-ribose pyrophospha 99.7 1.3E-15 2.8E-20 127.2 13.8 113 81-202 8-122 (145)
45 cd04671 Nudix_Hydrolase_13 Mem 99.7 1E-15 2.2E-20 124.0 12.6 104 86-199 3-107 (123)
46 PRK10776 nucleoside triphospha 99.7 1.6E-15 3.5E-20 121.3 13.5 97 99-202 17-113 (129)
47 cd04690 Nudix_Hydrolase_31 Mem 99.7 1.3E-15 2.9E-20 120.9 12.7 93 99-202 13-110 (118)
48 cd03675 Nudix_Hydrolase_2 Cont 99.7 1.4E-15 3.1E-20 123.5 13.0 99 99-203 12-112 (134)
49 cd04666 Nudix_Hydrolase_9 Memb 99.7 2.4E-15 5.3E-20 121.8 13.3 102 95-205 12-118 (122)
50 cd03672 Dcp2p mRNA decapping e 99.6 1.3E-15 2.9E-20 127.0 11.5 99 99-205 15-114 (145)
51 cd04689 Nudix_Hydrolase_30 Mem 99.6 2.9E-15 6.3E-20 120.5 13.0 96 99-200 13-112 (125)
52 cd04687 Nudix_Hydrolase_28 Mem 99.6 3.6E-15 7.7E-20 120.6 13.3 101 99-204 13-123 (128)
53 cd03425 MutT_pyrophosphohydrol 99.6 3E-15 6.4E-20 118.3 12.2 97 99-202 14-110 (124)
54 PRK00714 RNA pyrophosphohydrol 99.6 3.3E-15 7.2E-20 125.9 13.3 112 83-202 8-135 (156)
55 cd04667 Nudix_Hydrolase_10 Mem 99.6 3.8E-15 8.2E-20 117.8 12.3 91 99-203 12-102 (112)
56 PRK10546 pyrimidine (deoxy)nuc 99.6 6.5E-15 1.4E-19 119.7 13.7 97 99-202 16-112 (135)
57 cd04688 Nudix_Hydrolase_29 Mem 99.6 6.2E-15 1.3E-19 118.7 12.5 98 99-202 13-118 (126)
58 cd04669 Nudix_Hydrolase_11 Mem 99.6 4.9E-15 1.1E-19 119.2 11.7 96 99-203 13-115 (121)
59 cd04672 Nudix_Hydrolase_14 Mem 99.6 7.6E-15 1.6E-19 118.0 12.8 105 85-203 4-113 (123)
60 cd04676 Nudix_Hydrolase_17 Mem 99.6 8.9E-15 1.9E-19 116.7 11.7 106 85-202 4-117 (129)
61 cd04686 Nudix_Hydrolase_27 Mem 99.6 2E-14 4.4E-19 117.3 13.1 98 99-203 12-120 (131)
62 cd04511 Nudix_Hydrolase_4 Memb 99.6 2.7E-14 5.8E-19 116.1 13.3 105 83-200 13-117 (130)
63 cd02883 Nudix_Hydrolase Nudix 99.6 2.3E-14 4.9E-19 112.0 12.4 108 86-202 3-112 (123)
64 TIGR00586 mutt mutator mutT pr 99.6 3.8E-14 8.2E-19 113.7 13.9 97 99-202 17-113 (128)
65 PRK00241 nudC NADH pyrophospha 99.6 1.3E-14 2.7E-19 132.0 12.0 111 79-202 128-238 (256)
66 cd04662 Nudix_Hydrolase_5 Memb 99.6 3.8E-14 8.3E-19 115.7 13.6 99 95-196 12-126 (126)
67 PLN02791 Nudix hydrolase homol 99.6 2.5E-14 5.5E-19 146.0 14.2 121 78-201 27-157 (770)
68 TIGR00052 nudix-type nucleosid 99.6 1.6E-14 3.5E-19 125.3 10.9 115 85-202 46-165 (185)
69 PRK10729 nudF ADP-ribose pyrop 99.5 9.4E-14 2E-18 122.1 12.4 116 82-202 49-171 (202)
70 PLN02552 isopentenyl-diphospha 99.5 2E-13 4.4E-18 123.3 13.9 120 79-202 52-203 (247)
71 PRK05379 bifunctional nicotina 99.5 1.6E-13 3.5E-18 129.4 13.6 111 84-202 204-322 (340)
72 cd04685 Nudix_Hydrolase_26 Mem 99.5 2.6E-13 5.5E-18 111.6 12.8 113 86-202 3-123 (133)
73 cd04665 Nudix_Hydrolase_8 Memb 99.5 5.1E-13 1.1E-17 107.9 12.6 100 86-199 3-102 (118)
74 cd04661 MRP_L46 Mitochondrial 99.5 4E-13 8.8E-18 109.9 11.0 95 99-202 14-120 (132)
75 PRK08999 hypothetical protein; 99.4 1.8E-12 3.9E-17 120.1 13.6 97 99-202 18-114 (312)
76 PRK15009 GDP-mannose pyrophosp 99.4 2E-12 4.3E-17 112.8 12.6 114 83-202 46-166 (191)
77 TIGR02705 nudix_YtkD nucleosid 99.4 4.1E-12 8.9E-17 107.4 12.6 91 99-202 36-127 (156)
78 cd04674 Nudix_Hydrolase_16 Mem 99.4 6.3E-12 1.4E-16 101.6 13.0 58 82-147 4-61 (118)
79 cd04663 Nudix_Hydrolase_6 Memb 99.4 5.1E-12 1.1E-16 103.3 11.6 99 96-201 12-115 (126)
80 COG0494 MutT NTP pyrophosphohy 99.4 5.7E-12 1.2E-16 100.2 11.2 112 85-203 13-135 (161)
81 PLN03143 nudix hydrolase; Prov 99.4 8.1E-12 1.8E-16 115.2 12.4 79 95-174 140-218 (291)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.3 1.9E-11 4E-16 106.2 11.0 46 95-146 46-91 (186)
83 KOG3041 Nucleoside diphosphate 99.2 6.9E-11 1.5E-15 102.0 11.0 105 94-202 84-194 (225)
84 COG2816 NPY1 NTP pyrophosphohy 99.2 2.8E-11 6.2E-16 110.2 7.5 111 79-202 140-250 (279)
85 PLN02839 nudix hydrolase 99.2 2.2E-10 4.7E-15 108.1 11.6 123 79-202 199-327 (372)
86 KOG3084 NADH pyrophosphatase I 99.2 1.2E-11 2.7E-16 113.3 3.0 113 80-202 184-298 (345)
87 COG1443 Idi Isopentenyldiphosp 99.0 9.2E-10 2E-14 93.5 7.7 116 83-205 33-156 (185)
88 KOG2839 Diadenosine and diphos 99.0 2.5E-09 5.5E-14 88.3 8.3 118 80-203 7-126 (145)
89 cd03431 DNA_Glycosylase_C DNA 98.9 1.8E-08 4E-13 79.0 11.9 91 99-202 15-105 (118)
90 KOG0648 Predicted NUDIX hydrol 98.6 3E-08 6.4E-13 91.1 4.9 120 81-205 113-234 (295)
91 KOG4313 Thiamine pyrophosphoki 98.2 4E-06 8.7E-11 75.1 6.6 122 80-202 128-258 (306)
92 PF14815 NUDIX_4: NUDIX domain 98.1 4.4E-06 9.5E-11 66.2 5.6 96 94-201 7-102 (114)
93 KOG0142 Isopentenyl pyrophosph 97.9 1.8E-05 3.9E-10 68.9 5.1 116 82-202 51-183 (225)
94 COG4119 Predicted NTP pyrophos 97.9 3.4E-05 7.5E-10 62.7 6.0 62 83-147 5-68 (161)
95 KOG4195 Transient receptor pot 97.6 0.00012 2.5E-09 64.8 5.4 40 98-143 139-178 (275)
96 PRK10880 adenine DNA glycosyla 97.0 0.0051 1.1E-07 58.6 9.8 88 99-201 243-330 (350)
97 PF13869 NUDIX_2: Nucleotide h 96.2 0.055 1.2E-06 47.2 10.0 58 81-146 42-99 (188)
98 COG4112 Predicted phosphoester 96.1 0.06 1.3E-06 45.8 9.4 100 99-201 73-186 (203)
99 KOG2937 Decapping enzyme compl 94.8 0.0088 1.9E-07 56.0 0.4 96 99-204 96-194 (348)
100 PRK13910 DNA glycosylase MutY; 89.6 1.7 3.7E-05 40.4 8.1 70 99-201 198-267 (289)
101 COG1194 MutY A/G-specific DNA 89.2 1.1 2.3E-05 42.7 6.5 103 70-201 224-326 (342)
102 KOG4432 Uncharacterized NUDIX 88.2 1 2.2E-05 42.0 5.5 85 117-202 287-376 (405)
103 KOG1689 mRNA cleavage factor I 87.7 1.7 3.8E-05 37.3 6.2 54 82-143 69-122 (221)
104 TIGR01084 mutY A/G-specific ad 87.1 3 6.4E-05 38.5 7.9 22 99-121 240-261 (275)
105 KOG4432 Uncharacterized NUDIX 84.2 1.9 4.1E-05 40.3 5.0 59 116-175 81-141 (405)
106 PF14443 DBC1: DBC1 81.6 1.7 3.7E-05 35.5 3.3 51 99-149 9-61 (126)
107 PF03487 IL13: Interleukin-13; 59.2 8.9 0.00019 25.1 2.1 23 119-142 14-36 (43)
108 PF12535 Nudix_N: Hydrolase of 56.5 3.4 7.4E-05 29.2 -0.2 39 25-63 8-46 (58)
109 KOG4548 Mitochondrial ribosoma 46.6 36 0.00079 31.1 4.7 44 99-146 140-184 (263)
110 PF07026 DUF1317: Protein of u 26.7 49 0.0011 23.5 1.8 21 116-140 24-44 (60)
111 KOG1202 Animal-type fatty acid 23.8 69 0.0015 36.1 3.0 31 116-153 270-300 (2376)
No 1
>PLN02709 nudix hydrolase
Probab=100.00 E-value=5.5e-42 Score=303.10 Aligned_cols=186 Identities=60% Similarity=1.030 Sum_probs=163.1
Q ss_pred CCCeEEEEEEEEeec---CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec
Q 023911 80 RPKKAAVLICLFEGD---AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE 156 (275)
Q Consensus 80 ~~r~aAVlv~L~~~~---~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~ 156 (275)
..++|||+|+|+..+ +++++|||++|+.++++|+|+||||||++|++|+++.+||+||++||+||+++.++++|.++
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~ 109 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLE 109 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecC
Confidence 458999999998742 35789999999999999999999999999999878999999999999999999999999999
Q ss_pred ccccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeec--CCceeEE
Q 023911 157 PFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYE--NKKYLIW 234 (275)
Q Consensus 157 ~~~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~--~~~~~IW 234 (275)
.+.+..++.|+|||+.+.....+.+.+|++||+++||+||++|+++++++...+.|.|..+.+|+|.|..+ .+++.||
T Consensus 110 ~~~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~IW 189 (222)
T PLN02709 110 PFVNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYYSEDKERNFIIW 189 (222)
T ss_pred CeECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEeccCCCCCCEEE
Confidence 98888899999999999754445556899999999999999999999988777788898889999988321 2468999
Q ss_pred chhHHHHHHHHHHHhCCCCCccccCCCCCCC
Q 023911 235 GLTAGILIRAASVVYQKPPAFIEQNPKFKFP 265 (275)
Q Consensus 235 GlTa~iL~~~~~~~~~~~p~f~e~~~~~~~~ 265 (275)
|+||+||.+++.+++++.|+|....+.++.+
T Consensus 190 G~TA~IL~~l~~~~~~~~~~~~~~~~~~~~~ 220 (222)
T PLN02709 190 ALTAGILIRVASIVYQRLPEFQERKPRFWNQ 220 (222)
T ss_pred cHHHHHHHHHHHHHhccCCCccccccccccC
Confidence 9999999999999999999996555555543
No 2
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=100.00 E-value=2.2e-34 Score=250.53 Aligned_cols=161 Identities=32% Similarity=0.501 Sum_probs=140.9
Q ss_pred CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911 80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL 159 (275)
Q Consensus 80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~ 159 (275)
..+.|||++++.+++ +..|||++|+...+.|+|+|+||||++|++|+++.+||+||++||||+++..+++++.+.+..
T Consensus 28 ~~~~aavvl~l~~~~--~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~ 105 (190)
T PRK10707 28 NQRQAAVLIPIVRRP--QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVD 105 (190)
T ss_pred cCCCeEEEEEEEECC--CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeee
Confidence 456789999887633 349999999999989999999999999998768999999999999999999999999998877
Q ss_pred cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHH
Q 023911 160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAG 239 (275)
Q Consensus 160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~ 239 (275)
+..++.++++++.+.... ...+|++|+.+++|+|++++.+..++....+.+.|..+.+++|.| +++.|||+||+
T Consensus 106 ~~~~~~~~~~v~~~~~~~--~~~~d~~Ev~~v~~vpl~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iWG~Ta~ 179 (190)
T PRK10707 106 SSTGYQVTPVVGIIPPDL--PYRANEDEVAAVFEMPLAEALHLGRYHPLDIYRRGQSHRVWLSWY----EQYFVWGMTAG 179 (190)
T ss_pred ccCCcEEEEEEEEECCCC--CCCCChhhhheEEEEeHHHHhCcccceeEEEeeCCcEEEEEEEEe----CCcEEEhHHHH
Confidence 777889999999987543 346789999999999999999998887777778888888999987 47999999999
Q ss_pred HHHHHHHHH
Q 023911 240 ILIRAASVV 248 (275)
Q Consensus 240 iL~~~~~~~ 248 (275)
||.+++..+
T Consensus 180 il~~~~~~~ 188 (190)
T PRK10707 180 IIRELALQI 188 (190)
T ss_pred HHHHHHHHh
Confidence 999998764
No 3
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=100.00 E-value=5.3e-35 Score=256.27 Aligned_cols=222 Identities=32% Similarity=0.464 Sum_probs=167.9
Q ss_pred HHHHhccccCCCCCC-chhHHHHHHhhhcccccccCcccccCCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEEEeCCC
Q 023911 30 ALAQQLRLYKPPPPF-DEMEEQQIQETAGKVVSQVGFQESVTPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSR 108 (275)
Q Consensus 30 ~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~ 108 (275)
.|+|+..+|+|+... .+...+.. +-..+ ..++.......+.+||+|+|++.++|+++||||||+.+
T Consensus 2 ~l~~~~~~s~p~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~ 68 (246)
T KOG3069|consen 2 SLAQLQLLSSPCLVSTSNDPKRLL---GPATI----------ISKSETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRT 68 (246)
T ss_pred chhhHHHhcCCCccccccchhhhc---Chhhh----------hhhcccccCCCCCccEEEEEEEcCCCceEEEEEecccc
Confidence 478888899988654 22222111 10000 00111222356889999999997678899999999999
Q ss_pred CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC-CCCCCChhh
Q 023911 109 MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA-FTPTPNPAE 187 (275)
Q Consensus 109 l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~-~~~~~~~~E 187 (275)
+++|+|++|||||++|+.|.+..+||+||++||+|++++.++++|.++++....+..|.|+|+++.+..- ....+|++|
T Consensus 69 LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gE 148 (246)
T KOG3069|consen 69 LRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGE 148 (246)
T ss_pred ccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecccccccccCCchh
Confidence 9999999999999999999999999999999999999999999999999988888899999999987532 346889999
Q ss_pred hhcceecChhhhhccCCCcceeeeEeceeEEEEEEEe--eecCCceeEEchhHHHHHHHHHHHhCCCCCccccCCCCCC
Q 023911 188 VEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDY--EYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKF 264 (275)
Q Consensus 188 V~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~--~~~~~~~~IWGlTa~iL~~~~~~~~~~~p~f~e~~~~~~~ 264 (275)
|.++|||||++|+.+...+..+....+......+++| .+....+.+||+|+.||.++..++++..+.+....++|..
T Consensus 149 v~~~F~VPL~~ll~~~~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~iT~~Il~~~~~~l~~~l~~~~~~~~~h~l 227 (246)
T KOG3069|consen 149 VESAFWVPLTDLLLPKHQTAFQISRSYYRTYFFFIEYFFIWGVTNLFLWGITHGILGDLPNFLSPSLLTSLPYFQKHDL 227 (246)
T ss_pred eeeeeeeeHHHHhhhhcchHHHHhhhhhccchhhheeehhccCcchhhHHHHHHHHhcchhhcCchhhhcccccccccc
Confidence 9999999999999998776433222222221212222 1233467899999999999999999988877665566554
No 4
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.97 E-value=1.3e-30 Score=219.78 Aligned_cols=156 Identities=42% Similarity=0.711 Sum_probs=126.3
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCC-CCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEG-DRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS 160 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~g-E~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~ 160 (275)
|++||+|++++. +++.+|||++|+..+..++|.|+||||++|+| | ++.+||+||++||||++...+..++.+.....
T Consensus 1 ~~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdE-s~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~ 78 (157)
T cd03426 1 RRAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDE-DPVATALREAEEEIGLPPDSVEVLGRLPPYYT 78 (157)
T ss_pred CceEEEEEEEeC-CCceEEEEEEcccccccCCCcEECCCCCcCCCcC-CHHHHHHHHHHHHhCCCccceEEEEECCCccc
Confidence 578999998874 44569999999988778999999999999999 7 99999999999999999999999998876666
Q ss_pred CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCCcceeeeEeceeEEEEEEEeeecCCceeEEchhHHH
Q 023911 161 KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGI 240 (275)
Q Consensus 161 ~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~IWGlTa~i 240 (275)
..+..+++|++.+... ..+.++++|+.++.|+|++++.+..+.......+.+ ....+++.|+. .+++|||+||||
T Consensus 79 ~~~~~v~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iwg~t~~i 153 (157)
T cd03426 79 RSGFVVTPVVGLVPPP--LPLVLNPDEVAEVFEVPLSFLLDPANPRTTRRHGRG-GLTFPAFALPG--EGYVIWGLTARI 153 (157)
T ss_pred cCCCEEEEEEEEECCC--CCCCCCHHHhheeEEEcHHHHhCcCCceEEEEEeCC-ceEEEEEEecC--CCcEEEhHHHHH
Confidence 5677788888887653 234678899999999999999998776544444544 12345555542 468999999999
Q ss_pred HHHH
Q 023911 241 LIRA 244 (275)
Q Consensus 241 L~~~ 244 (275)
|.++
T Consensus 154 ~~~~ 157 (157)
T cd03426 154 LSEL 157 (157)
T ss_pred HhhC
Confidence 9874
No 5
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.9e-19 Score=145.02 Aligned_cols=119 Identities=22% Similarity=0.146 Sum_probs=89.5
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEEecccc
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTVLEPFL 159 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~l~~~~ 159 (275)
+.||.+.|++.++|+.+||+++|+..+..+||.|++ |||++|+|| ++.+||+||++|||||.. ..+..++.+....
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gE-t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~ 80 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGE-TPLEDGIRELEEELGLDVSADDLIPLGTFKIEY 80 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCC-CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence 467888888865555699999999988889999999 599999999 999999999999999975 3566677665433
Q ss_pred c-C----CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 160 S-K----HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 160 ~-~----~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
. . .....+.|++..... ...+.++++|+.++.|+|++++.+.-
T Consensus 81 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 81 DHIGKLIDREFHHVYLYELKVP-LEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred cccCCCccceEEEEEEEeccCC-hhhcCCChhHhheEEEECHHHHHHHH
Confidence 2 1 112335556655431 11235678999999999999997643
No 6
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.7e-18 Score=140.22 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=84.9
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL 163 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~ 163 (275)
||.+++++ .+| +|||++|+.....++|.|++ |||++++|| ++.+||+||++|||||+...+..++.+........
T Consensus 2 ~~~v~i~~-~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE-~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~ 77 (126)
T cd04697 2 ATYIFVFN-SEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAGE-SYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNR 77 (126)
T ss_pred eEEEEEEc-CCC--eEEEEECCCCCCCCCCcccCcCCcccCCCC-CHHHHHHHHHHHHHCCCccccEEeeEEEecCCCce
Confidence 56666776 356 89999999887788999999 699999999 99999999999999999887777777644332223
Q ss_pred eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
...+.|.+.... ...++++|+.++.|++++++.+.
T Consensus 78 ~~~~~f~~~~~~----~~~~~~~E~~~~~w~~~~el~~~ 112 (126)
T cd04697 78 VWGKVFSCVYDG----PLKLQEEEVEEITWLSINEILQF 112 (126)
T ss_pred EEEEEEEEEECC----CCCCCHhHhhheEEcCHHHHHHH
Confidence 333445554432 23467889999999999999764
No 7
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.7e-18 Score=136.04 Aligned_cols=97 Identities=25% Similarity=0.350 Sum_probs=75.9
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|+.+...++|.|+||||++|+|| ++.+||+||++||||++...+..++.+..... ....++.|.+.....
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-- 87 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGE-SQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYYVVTFWQG-- 87 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEEEEEEecC--
Confidence 89999998776678999999999999999 99999999999999999777777766654332 334455566554321
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.++.+|+.++.|+|++++...
T Consensus 88 ---~~~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 88 ---EIPAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred ---CCCcccccccEEcCHHHcchh
Confidence 123489999999999998654
No 8
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.4e-18 Score=136.67 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=76.5
Q ss_pred EEEEEEeCCC-CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEE--EEEecccccCCceEEEEEEEEEcC
Q 023911 99 RVILTKRSSR-MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEV--VTVLEPFLSKHLLRVVPVIGILSN 175 (275)
Q Consensus 99 ~VLL~rRs~~-l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~--lg~l~~~~~~~~~~V~p~v~~l~~ 175 (275)
+|||++|+.. ...++|.|+||||++|.|| ++.+||+||++||||++.....+ ...+. ........+.|++....
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~ 89 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGE-TPLECVLRELLEEIGLTLPESRIPWFRVYP--SASPPGTEHVFVVPLTA 89 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCC-CHHHHHHHHHHHHhCCcccccccceeEecc--cCCCCceEEEEEEEEec
Confidence 8999999987 5678999999999999999 99999999999999998753322 22222 11223345566665543
Q ss_pred CCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911 176 KKAFTPTPNPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 176 ~~~~~~~~~~~EV~~v~wvpl~ell~~~~~ 205 (275)
.. ....+.+|+.++.|++++++.+..+.
T Consensus 90 ~~--~~~~~~~E~~~~~W~~~~el~~~~~~ 117 (122)
T cd04682 90 RE--DAILFGDEGQALRLMTVEEFLAHEDA 117 (122)
T ss_pred CC--CccccCchhheeecccHHHHhhcccc
Confidence 22 23467899999999999999887653
No 9
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=6.2e-18 Score=136.07 Aligned_cols=111 Identities=19% Similarity=0.266 Sum_probs=81.6
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-- 161 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-- 161 (275)
.+|.+++++ .+| +|||++|+.. ..+|.|+||||++|+|| ++.+||+||++||||+.....++++........
T Consensus 3 ~~~~~~i~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd04679 3 VGCGAAILR-DDG--KLLLVKRLRA--PEAGHWGIPGGKVDWME-AVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPP 76 (125)
T ss_pred eEEEEEEEC-CCC--EEEEEEecCC--CCCCeEeCCeeeccCCC-CHHHHHHHHHHHHHCCCcccceEEEEEeecccCCC
Confidence 345555565 345 8999999753 35799999999999999 999999999999999999888888877655432
Q ss_pred CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.......|++....... ...+++|+.++.|++++++.+.
T Consensus 77 ~~~~~~~f~~~~~~~~~--~~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 77 QHWVAPVYLAENFSGEP--RLMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred CeEEEEEEEEeecCCcc--ccCCCccccEEEEeCHHHCCch
Confidence 22233445555543221 1246679999999999998753
No 10
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5.5e-18 Score=136.95 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=82.7
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL 163 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~ 163 (275)
+||.+++++. +| +|||++|+.. .++|.|+||||++|.|| ++.+||+||++||||++...+..++.+.......+
T Consensus 2 ~av~~~i~~~-~~--~vLL~~r~~~--~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (130)
T cd04681 2 AAVGVLILNE-DG--ELLVVRRARE--PGKGTLDLPGGFVDPGE-SAEEALIREIREETGLKVTELSYLFSLPNTYPYGG 75 (130)
T ss_pred ceEEEEEEcC-CC--cEEEEEecCC--CCCCcEeCCceeecCCC-CHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC
Confidence 6788878773 45 8999999864 35899999999999999 99999999999999999988888887654332222
Q ss_pred eE----EEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911 164 LR----VVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200 (275)
Q Consensus 164 ~~----V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell 200 (275)
.. ...|++.+... ....+.+|+.++.|+|++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 76 MEYDTLDLFFVCQVDDK---PIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred ceeEEEEEEEEEEeCCC---CCcCChHHhheeEEecHHHCC
Confidence 21 12455665432 224567899999999999984
No 11
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.1e-17 Score=135.22 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=77.6
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccC
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSK 161 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~ 161 (275)
+|.+++++ ++| +|||++|+..+..++|.|+|| ||++|.|| ++ +||+||++||||+++. .+..++.+.....
T Consensus 2 ~v~v~~~~-~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE-~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~- 75 (127)
T cd04693 2 VVHVCIFN-SKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAGE-TS-TAAEREVKEELGLELDFSELRPLFRYFFEAE- 75 (127)
T ss_pred eEEEEEEe-CCC--eEEEEEccCCCCCCCCcccccCCCcCCCCC-CH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC-
Confidence 46666776 355 899999998877889999998 99999999 99 9999999999999865 3334444322111
Q ss_pred CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 162 HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 162 ~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
....++.|.+... .....++++|+.++.|++++++.+.-
T Consensus 76 ~~~~~~~~~~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04693 76 GFDDYYLFYADVE---IGKLILQKEEVDEVKFVSKDEIDGLI 114 (127)
T ss_pred CeEEEEEEEecCc---ccccccCHHHhhhEEEeCHHHHHHHH
Confidence 1111222222211 12335678899999999999997754
No 12
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.75 E-value=1.4e-17 Score=135.84 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=85.9
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL 163 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~ 163 (275)
.+|.+++++. ++ ++||++|.... ..++.|+||||++|.|| ++.+||+||++||||+....+..++.+........
T Consensus 3 ~~v~v~~~~~-~~--~iLl~~~~~~~-~~~~~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd03424 3 DAVAVLPYDD-DG--KVVLVRQYRPP-VGGWLLELPAGLIDPGE-DPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSD 77 (137)
T ss_pred CEEEEEEEcC-CC--eEEEEEeeecC-CCCEEEEeCCccCCCCC-CHHHHHHHHHHHHHCCCccceEEEeeEecCCcccC
Confidence 4556656663 45 89998875432 35789999999999999 99999999999999999988887777654333334
Q ss_pred eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
..++.|++....... ...++++|+.++.|++++++.+.-
T Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 78 ERIHLFLAEDLSPGE-EGLLDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred ccEEEEEEEcccccc-cCCCCCCCeeEEEEecHHHHHHHH
Confidence 457777777665321 135678899999999999998654
No 13
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4.4e-17 Score=135.76 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=82.5
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce----EEEEEecccc
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV----EVVTVLEPFL 159 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~----~~lg~l~~~~ 159 (275)
++|.|++++ .++ +|||+||+..+..++|.|+||||+++++| ++.+||+||+.||+|+.+... ++++.....+
T Consensus 2 ~~v~viv~~-~~~--~vLl~rr~~~~~~~~g~w~~PgG~v~~~E-~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~ 77 (143)
T cd04694 2 VGVAVLLQS-SDQ--KLLLTRRASSLRIFPNVWVPPGGHVELGE-NLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVY 77 (143)
T ss_pred cEEEEEEEc-CCC--EEEEEEECCCCCCCCCeEECcccccCCCC-CHHHHHHHHHHHHHCCCccccccceeEEeeecccc
Confidence 456666666 345 89999999887789999999999999999 999999999999999987653 5666543322
Q ss_pred c----C--C-ceEEEEEEEEEcCC----CCCCCCCChhhhhcceecChhhhhcc
Q 023911 160 S----K--H-LLRVVPVIGILSNK----KAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 160 ~----~--~-~~~V~p~v~~l~~~----~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
. . . ...+..|+...... ....+.++++|++++.|++++++...
T Consensus 78 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 78 PPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred ccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 1 0 1 12334443332211 11234567899999999999998764
No 14
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=5.8e-17 Score=130.75 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=78.3
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL 163 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~ 163 (275)
.+|.+++++. ++ +|||++|... ++|.|+||||++|.|| |+.+||+||++||||+.......++..........
T Consensus 3 ~~~~~~v~~~-~~--~vLl~~r~~~---~~~~w~~PGG~ve~gE-t~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 75 (127)
T cd04670 3 VGVGGLVLNE-KN--EVLVVQERNK---TPNGWKLPGGLVDPGE-DIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFG 75 (127)
T ss_pred eEEEEEEEcC-CC--eEEEEEccCC---CCCcEECCCccCCCCC-CHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcC
Confidence 3455555553 45 8999987653 7899999999999999 99999999999999999877666654332211122
Q ss_pred eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
.....|++.+... ......+++|+.++.|++++++.+..
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 76 KSDLYFICRLKPL-SFDINFDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred ceeEEEEEEEccC-cCcCCCChhhhheeEEEcHHHHhcch
Confidence 2223344544321 22345678899999999999997643
No 15
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.73 E-value=2.3e-17 Score=134.83 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=82.5
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCce
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLL 164 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~ 164 (275)
+|+++++++ ++ +|||++|... .+|.|+||||+++.|| ++.+||+||++|||||+...+..++....... ..
T Consensus 2 ~v~i~l~~~-~~--~vLL~~r~~~---~~~~w~lPgG~ie~gE-t~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~ 72 (131)
T cd03429 2 AVIVLVIDG-GD--RILLARQPRF---PPGMYSLLAGFVEPGE-SLEEAVRREVKEEVGIRVKNIRYVGSQPWPFP--SS 72 (131)
T ss_pred eEEEEEEeC-CC--EEEEEEecCC---CCCcCcCCcccccCCC-CHHHHHhhhhhhccCceeeeeEEEeecCCCCC--ce
Confidence 567767663 34 8999999753 3789999999999999 99999999999999999988888876533222 33
Q ss_pred EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.+..|++..... ....+++|+.++.|+|++++.+.
T Consensus 73 ~~~~f~~~~~~~---~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 73 LMLGFTAEADSG---EIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEEEEEcCC---cccCCchhhhccEeecHHHHhhc
Confidence 455677776542 33567789999999999999876
No 16
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5.5e-17 Score=129.34 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=77.6
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccCC
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSKH 162 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~~ 162 (275)
||.+++.+ +| +|||++|... +.++|.|+||||++|+|| ++.+||+||++|||||... .+.+++.+.......
T Consensus 2 ~v~~vi~~--~~--~vLL~~r~~~-~~~~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 75 (120)
T cd04683 2 AVYVLLRR--DD--EVLLQRRANT-GYMDGQWALPAGHLEKGE-DAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI 75 (120)
T ss_pred cEEEEEEE--CC--EEEEEEccCC-CCCCCeEeCCccccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC
Confidence 45565555 35 8999999854 345899999999999999 9999999999999999876 566777665443321
Q ss_pred ceEE-EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 163 LLRV-VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 163 ~~~V-~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
...+ ..|.+...... ....+++|+.++.|+|++++...
T Consensus 76 ~~~~~~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~~l~~~ 114 (120)
T cd04683 76 ESRIGLFFTVRRWSGE--PRNCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred ceEEEEEEEEEeecCc--cccCCCCcEeeEEEEchHHCcch
Confidence 2222 33334332211 11245689999999999998754
No 17
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.73 E-value=6.5e-17 Score=134.41 Aligned_cols=112 Identities=26% Similarity=0.349 Sum_probs=81.6
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc----
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL---- 159 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~---- 159 (275)
.+|.+++++ .+| +|||++|+... |.|+||||++|+|| ++.+||+||++||||+.+....+++......
T Consensus 4 ~~v~~ii~~-~~~--~vLL~~r~~~~----~~W~~PgG~~e~gE-~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~ 75 (147)
T cd03671 4 PNVGVVLFN-EDG--KVFVGRRIDTP----GAWQFPQGGIDEGE-DPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDL 75 (147)
T ss_pred ceEEEEEEe-CCC--EEEEEEEcCCC----CCEECCcCCCCCCc-CHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeC
Confidence 345555555 345 89999998743 89999999999999 9999999999999999988888887753211
Q ss_pred c-----------CCceEEEEEEEEEcCC-CCCCCCC-ChhhhhcceecChhhhhccC
Q 023911 160 S-----------KHLLRVVPVIGILSNK-KAFTPTP-NPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 160 ~-----------~~~~~V~p~v~~l~~~-~~~~~~~-~~~EV~~v~wvpl~ell~~~ 203 (275)
. ..+..++.|++.+... ....... +++|+.++.|+|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 76 PPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred hhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence 0 1133466777766541 2222233 25799999999999998754
No 18
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=7.6e-17 Score=130.26 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=84.2
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH 162 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~ 162 (275)
+.+|.++|++. +| +|||++|... ..+|.|.+|||+++.|| ++.+||+||++||||+++.....++.........
T Consensus 2 ~~~v~~ii~~~-~~--~iLl~~r~~~--~~~~~w~~PGG~ve~gE-t~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~ 75 (129)
T cd04678 2 RVGVGVFVLNP-KG--KVLLGKRKGS--HGAGTWALPGGHLEFGE-SFEECAAREVLEETGLHIENVQFLTVTNDVFEEE 75 (129)
T ss_pred ceEEEEEEECC-CC--eEEEEeccCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCC
Confidence 34666667763 45 8999999863 46899999999999999 9999999999999999988888877665443222
Q ss_pred --ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 163 --LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 163 --~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
......|.+............+++|+.++.|++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (129)
T cd04678 76 GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence 23334455555442211111367889999999999998753
No 19
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.73 E-value=4e-17 Score=131.19 Aligned_cols=111 Identities=26% Similarity=0.289 Sum_probs=80.0
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc---
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS--- 160 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~--- 160 (275)
+|.+|++.. .+++.+|||++|... |.|+||||++++|| |+.+||+||++||||+....+..++.+.....
T Consensus 3 ~a~~ii~~~-~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (131)
T cd03673 3 AAGGVVFRG-SDGGIEVLLIHRPRG-----DDWSLPKGKLEPGE-TPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG 75 (131)
T ss_pred eEEEEEEEc-cCCCeEEEEEEcCCC-----CcccCCCCccCCCC-CHHHHHHHHHhhhhCCceEecceEEEEEEeccCCC
Confidence 444443333 344469999999752 88999999999999 99999999999999999888887777654332
Q ss_pred -CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 161 -KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 161 -~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
.....++.|++..... .... .+.+|+.++.|+|++++.+.-
T Consensus 76 ~~~~~~~~~~~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~~ 117 (131)
T cd03673 76 KRVHKTVHWWLMRALGG-EFTP-QPDEEVDEVRWLPPDEARDRL 117 (131)
T ss_pred CCcceEEEEEEEEEcCC-Cccc-CCCCcEEEEEEcCHHHHHHHc
Confidence 2233455566655432 1111 256899999999999997654
No 20
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.73 E-value=6.5e-17 Score=133.13 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=71.2
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE-Eec-----ccc
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT-VLE-----PFL 159 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg-~l~-----~~~ 159 (275)
|++.++.. +| +|||+||+..++.++|.|++|||++|+|| |+.+||+||++|||||......+.. .+. ..+
T Consensus 6 ~~~~ii~~-~~--~vLl~~R~~~~~~~~g~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (141)
T PRK15472 6 IVCPLIQN-DG--AYLLCKMADDRGVFPGQWALSGGGVEPGE-RIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTY 81 (141)
T ss_pred EEEEEEec-CC--EEEEEEecccCCCCCCceeCCcccCCCCC-CHHHHHHHHHHHHHCCceeeeeeccccccccceeEEe
Confidence 33434443 45 89999999877789999999999999999 9999999999999999764332211 010 001
Q ss_pred -cCCc-eEEEE-EEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 160 -SKHL-LRVVP-VIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 160 -~~~~-~~V~p-~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.... ..... ++...... .....++ +|+.++.|++++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 82 ADGRKEEIYMIYLIFDCVSA-NRDVKIN-EEFQDYAWVKPEDLVHY 125 (141)
T ss_pred cCCCceeEEEEEEEEEeecC-CCcccCC-hhhheEEEccHHHhccc
Confidence 1111 11111 11222111 1122333 79999999999999764
No 21
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.73 E-value=2.6e-17 Score=139.63 Aligned_cols=113 Identities=25% Similarity=0.238 Sum_probs=83.9
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceEEE-EEeccccc
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVEVV-TVLEPFLS 160 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~l-g~l~~~~~ 160 (275)
+.+|.+++++. +| +|||+||+..+..+||.|++| ||++|+|| ++.+||+||++|||||.......+ +.+.....
T Consensus 30 ~~~v~v~i~~~-~~--~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GE-t~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~ 105 (165)
T cd02885 30 HRAFSVFLFNS-KG--RLLLQRRALSKYTFPGLWTNTCCSHPLPGE-GVKDAAQRRLREELGITGDLLELVLPRFRYRAP 105 (165)
T ss_pred eeEEEEEEEcC-CC--cEEEEeccCCCccCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccchhhccceEEEEEE
Confidence 78888877773 55 899999998877899999996 89999999 999999999999999998766664 33322111
Q ss_pred --C---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 161 --K---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 161 --~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
. .....+.|.+.... ...++++|+.++.|+|++++.+.-
T Consensus 106 ~~~~~~~~~i~~~f~~~~~~----~~~~~~~Ev~~~~w~~~~el~~~~ 149 (165)
T cd02885 106 DDGGLVEHEIDHVFFARADV----TLIPNPDEVSEYRWVSLEDLKELV 149 (165)
T ss_pred cCCCceeeEEEEEEEEEeCC----CCCCCccceeEEEEECHHHHHHHH
Confidence 1 11123334444332 223577899999999999998754
No 22
>PLN02325 nudix hydrolase
Probab=99.73 E-value=1.2e-16 Score=133.01 Aligned_cols=114 Identities=24% Similarity=0.314 Sum_probs=82.5
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK 161 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~ 161 (275)
.+.+|.+++++ +| +|||++|+.. ...|.|++|||++|.|| |+.+||+||++||||+++...++++..+.....
T Consensus 8 p~~~v~~vi~~--~~--~vLL~rr~~~--~~~g~W~lPGG~ve~gE-s~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 8 PRVAVVVFLLK--GN--SVLLGRRRSS--IGDSTFALPGGHLEFGE-SFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CeEEEEEEEEc--CC--EEEEEEecCC--CCCCeEECCceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 34556665665 35 8999999864 34689999999999999 999999999999999999999988887654311
Q ss_pred ----CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 162 ----HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 162 ----~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
..+....|.+...+........+++|+.++.|+++++|...
T Consensus 81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 12233344455543222222356678889999999998754
No 23
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.73 E-value=5.3e-17 Score=131.31 Aligned_cols=109 Identities=25% Similarity=0.288 Sum_probs=81.3
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecc--cc--cC
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEP--FL--SK 161 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~--~~--~~ 161 (275)
|.|++++ ..++.+|||++|+.. ++|.|.+|||++|.|| ++.+||+||++|||||....+..+..... +. ..
T Consensus 4 ~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~E-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04664 4 VLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGE-SPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD 78 (129)
T ss_pred EEEEEEE-eCCCCEEEEEEeCCC---CCCcccccCcccCCCC-CHHHHHHHHHHHHHCCChhheEEEeecccccccccCC
Confidence 4444555 312338999999875 7999999999999999 99999999999999999877777776653 11 11
Q ss_pred --CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 162 --HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 162 --~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
....++.|++.+.... ....++|+.++.|++++++.+.
T Consensus 79 ~~~~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~ 118 (129)
T cd04664 79 NGRVWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAAL 118 (129)
T ss_pred CceEEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHHH
Confidence 2345677777765432 1234579999999999998754
No 24
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.72 E-value=5.6e-17 Score=139.32 Aligned_cols=122 Identities=24% Similarity=0.288 Sum_probs=88.6
Q ss_pred cCCCCeEEEEEEEEe-ecCCceEEEEEEeCCCCCCCCCcE-EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce---EEE
Q 023911 78 RFRPKKAAVLICLFE-GDAGDLRVILTKRSSRMSTHSGEI-SLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV---EVV 152 (275)
Q Consensus 78 ~~~~r~aAVlv~L~~-~~~g~~~VLL~rRs~~l~~~~G~w-sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~---~~l 152 (275)
..+..+.||.|.++. +.+++.+|+++||+.++..+||.| .+|||++++|| ++.+||+||++|||||+...+ ..+
T Consensus 27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE-~~~~aA~REl~EE~Gl~~~~~~~l~~~ 105 (180)
T cd03676 27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE-GPEETLVKECDEEAGLPEDLVRQLKPV 105 (180)
T ss_pred cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC-CHHHHHHHHHHHHhCCCHHHHhhceec
Confidence 346677888865432 233246999999999999999999 59999999999 999999999999999987763 344
Q ss_pred EEeccccc--C---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 153 TVLEPFLS--K---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 153 g~l~~~~~--~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+.+..... . ....++.|.+.+.. ...+.++++||.++.|++++++.+.
T Consensus 106 g~~~~~~~~~~~~~~~e~~~~f~~~~~~--~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 106 GVVSYLREGEAGGLQPEVEYVYDLELPP--DFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred cEEEEEEEcCCCcEeeeEEEEEEEEcCC--CCeeCCCCCcEeEEEEECHHHHHHH
Confidence 44433321 1 12234555555432 2234668899999999999999865
No 25
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.72 E-value=3.4e-17 Score=138.24 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=85.1
Q ss_pred CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceE--EEEEe
Q 023911 79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVE--VVTVL 155 (275)
Q Consensus 79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~--~lg~l 155 (275)
.+..+.+|.+++++. +| +|||+||+.++..+||.|++| ||+++.|| + +||+||++|||||+....+ .++.+
T Consensus 23 ~g~~h~~v~v~v~~~-~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-~--eaa~REl~EE~Gl~~~~~~l~~~~~~ 96 (158)
T TIGR02150 23 ETPLHRAFSVFLFNE-EG--QLLLQRRALSKITWPGVWTNSCCSHPLPGE-L--EAAIRRLREELGIPADDVPLTVLPRF 96 (158)
T ss_pred CCCeEEEEEEEEEcC-CC--eEEEEeccCCCcCCCCCccccccCCCCccc-H--HHHHHHHHHHHCCCccccceEEcceE
Confidence 367788888888874 56 899999999888999999997 89999999 3 9999999999999887654 34333
Q ss_pred ccccc---CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911 156 EPFLS---KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN 204 (275)
Q Consensus 156 ~~~~~---~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~ 204 (275)
..... .....++.|.+.... .+.++++|++++.|++++++.+.-.
T Consensus 97 ~~~~~~~~g~~~~~~~f~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~~~ 144 (158)
T TIGR02150 97 SYRARDAWGEHELCPVFFARAPV----PLNPNPEEVAEYRWVSLEELKEILK 144 (158)
T ss_pred EEEEecCCCcEEEEEEEEEecCC----cccCChhHeeeEEEeCHHHHHHHHh
Confidence 32221 112223344444332 3456778999999999999976543
No 26
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.72 E-value=7.6e-17 Score=139.05 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcE-EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911 80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEI-SLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158 (275)
Q Consensus 80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~w-sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~ 158 (275)
+..+.+|.+++++ ++| +|||++|+.....++|.| .+|||++++|| |+.+||+||++|||||.......++.+...
T Consensus 34 ~~~h~~~~v~v~~-~~g--~iLL~~R~~~~~~~pg~~~~~pGG~ve~GE-s~~eAA~REL~EEtGl~~~~~~~~~~~~~~ 109 (180)
T PRK15393 34 CLRHRATYIVVHD-GMG--KILVQRRTETKDFLPGMLDATAGGVVQAGE-QLLESARREAEEELGIAGVPFAEHGQFYFE 109 (180)
T ss_pred CCceEEEEEEEEC-CCC--eEEEEEeCCCCCCCCCcccccCCCcCCCCC-CHHHHHHHHHHHHHCCCCccceeceeEEec
Confidence 4567777777776 456 899999997776789988 58999999999 999999999999999987766666554222
Q ss_pred ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
..........|.+.... ...++++|+.++.|++++++.+.
T Consensus 110 ~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T PRK15393 110 DENCRVWGALFSCVSHG----PFALQEEEVSEVCWMTPEEITAR 149 (180)
T ss_pred CCCceEEEEEEEEEeCC----CCCCChHHeeEEEECCHHHHhhh
Confidence 22222122233333321 23568899999999999999865
No 27
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.72 E-value=9.5e-17 Score=136.11 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=81.0
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccC
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSK 161 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~ 161 (275)
.+|.+++.+ ++| +|||+||+. +..+|.|+||||++|.|| |+.+||+||++|||||... ...+++.....+..
T Consensus 18 ~~v~~vI~~-~~g--~VLL~kR~~--~~~~g~W~lPGG~VE~GE-t~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~ 91 (159)
T PRK15434 18 ISLDFIVEN-SRG--EFLLGKRTN--RPAQGYWFVPGGRVQKDE-TLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDD 91 (159)
T ss_pred EEEEEEEEC-CCC--EEEEEEccC--CCCCCcEECCceecCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEeeccc
Confidence 466666665 345 899999985 356899999999999999 9999999999999999854 23555554433221
Q ss_pred --------CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911 162 --------HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 162 --------~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~ 205 (275)
..+.+..|.+.+... .+.++++|+.++.|++++++......
T Consensus 92 ~~~~~~~~~~~i~~~f~~~~~~g---~~~~~~~E~~~~~W~~~~el~~~~~~ 140 (159)
T PRK15434 92 NFSGTDFTTHYVVLGFRLRVAEE---DLLLPDEQHDDYRWLTPDALLASDNV 140 (159)
T ss_pred ccCCCccceEEEEEEEEEEecCC---cccCChHHeeEEEEEeHHHhhhcccc
Confidence 123344555555431 33456789999999999999876543
No 28
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=8.8e-17 Score=127.85 Aligned_cols=108 Identities=25% Similarity=0.341 Sum_probs=80.4
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC----
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK---- 161 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~---- 161 (275)
|.+++++ ++ +|||++|... .++|.|.||||++|+|| ++.+||.||++||||++......++.+......
T Consensus 3 v~~ii~~--~~--~vLl~~r~~~--~~~~~w~~PgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 75 (122)
T cd04673 3 VGAVVFR--GG--RVLLVRRANP--PDAGLWSFPGGKVELGE-TLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGR 75 (122)
T ss_pred EEEEEEE--CC--EEEEEEEcCC--CCCCeEECCCcccCCCC-CHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCc
Confidence 4444555 35 7999999753 46899999999999999 999999999999999998878888777655421
Q ss_pred --CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911 162 --HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN 204 (275)
Q Consensus 162 --~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~ 204 (275)
....++.|.+..... .. .+.+|+.++.|++++++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~-~~~~E~~~~~w~~~~el~~~~~ 116 (122)
T cd04673 76 VEFHYVLIDFLCRYLGG---EP-VAGDDALDARWVPLDELAALSL 116 (122)
T ss_pred cceEEEEEEEEEEeCCC---cc-cCCcccceeEEECHHHHhhCcC
Confidence 123345555554432 11 3458999999999999987543
No 29
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.9e-17 Score=128.29 Aligned_cols=105 Identities=22% Similarity=0.256 Sum_probs=79.7
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc-ceEEEEEecccccCCce
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL-LVEVVTVLEPFLSKHLL 164 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~-~~~~lg~l~~~~~~~~~ 164 (275)
|.+++++ .+| +|||++|+. .+.|.||||+++.|| |+.+||+||++||||+... ....++.+.........
T Consensus 3 ~~~~i~~-~~~--~vLL~~r~~-----~~~w~~PgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~ 73 (120)
T cd04680 3 ARAVVTD-ADG--RVLLVRHTY-----GPGWYLPGGGLERGE-TFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWD 73 (120)
T ss_pred eEEEEEC-CCC--eEEEEEECC-----CCcEeCCCCcCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEecCCCCCce
Confidence 4555565 345 899999875 238999999999999 9999999999999999998 88888877655433334
Q ss_pred EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 165 RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 165 ~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.++.|.+...... ...+.+|+.++.|+|++++.+.
T Consensus 74 ~~~~f~~~~~~~~---~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 74 HVIVFRARADTQP---VIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred EEEEEEecccCCC---ccCCcccEEEEEEECHHHCccc
Confidence 4555666554321 1346689999999999999764
No 30
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.71 E-value=1.3e-16 Score=127.76 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=79.8
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc-CC--
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS-KH-- 162 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~-~~-- 162 (275)
|..++++ ++ +|||++|+... ++|.|+||||++|.|| ++.+||+||++||||+......+++....... ..
T Consensus 3 ~~~ii~~--~~--~vLl~~~~~~~--~~~~w~lPgG~ve~gE-~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04684 3 AYAVIPR--DG--KLLLIQKNGGP--YEGRWDLPGGGIEPGE-SPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD 75 (128)
T ss_pred eEEEEEe--CC--EEEEEEccCCC--CCCeEECCCcccCCCC-CHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC
Confidence 3444555 24 89999998653 7899999999999999 99999999999999999888888887665432 11
Q ss_pred ---ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 163 ---LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 163 ---~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
....+.|.+....... ....+.+|+.++.|+|++++....
T Consensus 76 ~~~~~~~~~f~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~~ 118 (128)
T cd04684 76 YDAHHLCVFYDARVVGGAL-PVQEPGEDSHGAAWLPLDEAIERL 118 (128)
T ss_pred eeccEEEEEEEEEEecCcc-ccCCCCCCceeeEEECHHHhhccC
Confidence 2234455555543211 013455788999999999997543
No 31
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.71 E-value=1.9e-16 Score=131.66 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=82.0
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce--EEEEEeccccc
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV--EVVTVLEPFLS 160 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~--~~lg~l~~~~~ 160 (275)
..+|.+++++ .+| +|||++|... ..+|.|+||||++|.|| |+.+||+||++||||+..... ++++.+.....
T Consensus 12 ~v~v~~vI~~-~~g--~vLl~~R~~~--p~~g~w~lPGG~ve~gE-s~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~ 85 (144)
T cd03430 12 LVSIDLIVEN-EDG--QYLLGKRTNR--PAQGYWFVPGGRIRKNE-TLTEAFERIAKDELGLEFLISDAELLGVFEHFYD 85 (144)
T ss_pred eEEEEEEEEe-CCC--eEEEEEccCC--CCCCcEECCCceecCCC-CHHHHHHHHHHHHHCCCcccccceEEEEEEEEec
Confidence 3456666666 346 8999999863 46899999999999999 999999999999999987765 67776654321
Q ss_pred ------C--CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 161 ------K--HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 161 ------~--~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
. ..+....|.+.+... .....++|+.++.|++++++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~el~~~~ 133 (144)
T cd03430 86 DNFFGDDFSTHYVVLGYVLKLSSN---ELLLPDEQHSEYQWLTSDELLADD 133 (144)
T ss_pred cccccCCCccEEEEEEEEEEEcCC---cccCCchhccEeEEecHHHHhcCC
Confidence 1 122334455555432 224567899999999999998653
No 32
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.70 E-value=6.9e-17 Score=129.53 Aligned_cols=117 Identities=30% Similarity=0.379 Sum_probs=88.7
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH 162 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~ 162 (275)
+.+|.+++++ .+| +|||++|+.....++|.|.+|||+++++| |+.+||+||+.||||++......++.........
T Consensus 2 ~~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E-~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~ 77 (134)
T PF00293_consen 2 RRAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPGE-SPEEAARRELKEETGLDVSPLELLGLFSYPSPSG 77 (134)
T ss_dssp EEEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTTS-HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT
T ss_pred CCEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcCC-chhhhHHhhhhhcccceecccccceeeeecccCC
Confidence 4567776777 355 99999999876568899999999999999 9999999999999999987666666555443222
Q ss_pred ---ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911 163 ---LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN 204 (275)
Q Consensus 163 ---~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~ 204 (275)
+..++.|++.+..... ....+..|+.++.|++++++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~ 121 (134)
T PF00293_consen 78 DPEGEIVIFFIAELPSEQS-EIQPQDEEISEVKWVPPDELLELLL 121 (134)
T ss_dssp ESSEEEEEEEEEEEEEEES-ECHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred CcccEEEEEEEEEEeCCcc-ccCCCCccEEEEEEEEHHHhhhchh
Confidence 3566777766654321 2344555999999999999987643
No 33
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.70 E-value=1.6e-16 Score=137.22 Aligned_cols=116 Identities=21% Similarity=0.267 Sum_probs=85.7
Q ss_pred CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCCCHHHHHHHHHHHHhCCCCcceE-EEEEecc
Q 023911 80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDRDDGDTATREAKEEIGLDPLLVE-VVTVLEP 157 (275)
Q Consensus 80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~-~lg~l~~ 157 (275)
...+.||.+++++. +| +|||++|+..+..+||.|++| ||++++|| |+.+||+||++|||||+...+. +++.+..
T Consensus 31 ~~~h~av~v~i~~~-~g--~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 106 (184)
T PRK03759 31 TPLHLAFSCYLFDA-DG--RLLVTRRALSKKTWPGVWTNSCCGHPQPGE-SLEDAVIRRCREELGVEITDLELVLPDFRY 106 (184)
T ss_pred CCeeeEEEEEEEcC-CC--eEEEEEccCCCCCCCCcccccccCCCCCCC-CHHHHHHHHHHHHhCCCccccccccceEEE
Confidence 45677888877773 55 899999998777889999986 89999999 9999999999999999886443 3333321
Q ss_pred cc--cCC---ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 158 FL--SKH---LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 158 ~~--~~~---~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
.. ... ....+.|++.... .+.++++|+.++.|+|++++.+.-
T Consensus 107 ~~~~~~~~~~~~~~~vf~~~~~~----~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 107 RATDPNGIVENEVCPVFAARVTS----ALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred EEecCCCceeeEEEEEEEEEECC----CCCCChhHeeeEEEECHHHHHHHH
Confidence 11 111 1133456666542 235688999999999999997753
No 34
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.4e-16 Score=129.72 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=73.0
Q ss_pred eEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC---ceEEEEEEEEEc
Q 023911 98 LRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH---LLRVVPVIGILS 174 (275)
Q Consensus 98 ~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~---~~~V~p~v~~l~ 174 (275)
.+|||++|+.. ++|.|++|||++|+|| |+.+||+||++|||||....+...+.+..++... ...+..|++.+.
T Consensus 14 ~~vLl~~r~~~---~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 89 (131)
T cd04695 14 TKVLLLKRVKT---LGGFWCHVAGGVEAGE-TAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVP 89 (131)
T ss_pred CEEEEEEecCC---CCCcEECCcccccCCC-CHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEec
Confidence 38999999864 6899999999999999 9999999999999999877654333332222221 223445666654
Q ss_pred CCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911 175 NKKAFTPTPNPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 175 ~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~ 205 (275)
... ...++ +|+.++.|+|++++.+...+
T Consensus 90 ~~~--~~~~~-~E~~~~~W~~~~e~~~~~~~ 117 (131)
T cd04695 90 PHQ--EVVLN-HEHTEYRWCSFAEALELAPF 117 (131)
T ss_pred CCC--ccccC-chhcccEecCHHHHHHhcCC
Confidence 321 12233 79999999999999876543
No 35
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.69 E-value=1.9e-16 Score=127.74 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=79.4
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc----
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL---- 159 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~---- 159 (275)
+|.+|++.. ++++.+|||++|+. |.|+||||++|+|| |+.+||+||++||||+.......++.+....
T Consensus 4 ~~g~vi~~~-~~~~~~vLl~~~~~------~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 75 (130)
T cd03428 4 SAGAIIYRR-LNNEIEYLLLQASY------GHWDFPKGHVEPGE-DDLEAALRETEEETGITAEQLFIVLGFKETLNYQV 75 (130)
T ss_pred EEEEEEEEe-cCCCceEEEEEccC------CcCcCCcCCCCCCC-CHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc
Confidence 444443433 45567899999874 78999999999999 9999999999999999988777653332111
Q ss_pred cCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 160 SKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 160 ~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
......++.|++.+.... .+.++ +|+.++.|++++++.+.-
T Consensus 76 ~~~~~~~~~f~~~~~~~~--~~~~~-~E~~~~~W~~~~e~~~~~ 116 (130)
T cd03428 76 RGKLKTVTYFLAELRPDV--EVKLS-EEHQDYRWLPYEEALKLL 116 (130)
T ss_pred cCcceEEEEEEEEeCCCC--ccccc-cceeeEEeecHHHHHHHc
Confidence 223456677888776322 23445 899999999999997653
No 36
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.69 E-value=3.7e-16 Score=129.43 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=81.2
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC-C
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK-H 162 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~-~ 162 (275)
.||.+++++ .++ +|||++|... .++|.|+||||++++|| |+.+||+||++||||++......++.+...... .
T Consensus 14 ~av~~vv~~-~~~--~vLL~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 87 (142)
T cd04700 14 RAAGAVILN-ERN--DVLLVQEKGG--PKKGLWHIPSGAVEDGE-FPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV 87 (142)
T ss_pred eeEEEEEEe-CCC--cEEEEEEcCC--CCCCeEECCceecCCCC-CHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCc
Confidence 344444555 345 7899888643 35899999999999999 999999999999999998888888766433222 2
Q ss_pred ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCC
Q 023911 163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDEN 204 (275)
Q Consensus 163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~ 204 (275)
....+.|++..... ...+. ..+|+.++.|+|++++.+...
T Consensus 88 ~~~~~~f~~~~~~~-~~~~~-~~~E~~~~~w~~~~el~~~~~ 127 (142)
T cd04700 88 LVLRHVWLAEPEGQ-TLAPK-FTDEIAEASFFSREDVAQLYA 127 (142)
T ss_pred EEEEEEEEEEecCC-ccccC-CCCCEEEEEEECHHHhhhccc
Confidence 22345666666432 22222 337999999999999987654
No 37
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.2e-16 Score=126.20 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=76.0
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc----
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS---- 160 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~---- 160 (275)
+|.+++++ .+| +|||+||.. +.|.|+||||++|.|| |+.+||+||++||||+++..+.+++.....+.
T Consensus 4 ~v~~~i~~-~~~--~iLL~r~~~----~~~~w~lPGG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 75 (125)
T cd04696 4 TVGALIYA-PDG--RILLVRTTK----WRGLWGVPGGKVEWGE-TLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFH 75 (125)
T ss_pred EEEEEEEC-CCC--CEEEEEccC----CCCcEeCCceeccCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCC
Confidence 34444555 345 799998753 5799999999999999 99999999999999999887776655433221
Q ss_pred -CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 161 -KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 161 -~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
...+.+..|.+..... ....+ +|+.++.|+|++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~---~~~~~-~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 76 KPAHFVLFDFFARTDGT---EVTPN-EEIVEWEWVTPEEALDYP 115 (125)
T ss_pred CccEEEEEEEEEEecCC---cccCC-cccceeEEECHHHHhcCC
Confidence 1122344555555431 22333 789999999999997654
No 38
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.69 E-value=4.5e-16 Score=128.00 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=74.3
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE------Eec
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT------VLE 156 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg------~l~ 156 (275)
+.+|.+++++.+.+ +|||++|+. .|.|++|||++|+|| ++.+||.||++||||+....+..++ .+.
T Consensus 2 ~~~~~~~v~~~~~~--~vLLv~r~~-----~~~w~lPgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 73 (138)
T cd03674 2 HFTASAFVVNPDRG--KVLLTHHRK-----LGSWLQPGGHIDPDE-SLLEAALRELREETGIELLGLRPLSVLVDLDVHP 73 (138)
T ss_pred cEEEEEEEEeCCCC--eEEEEEEcC-----CCcEECCceecCCCC-CHHHHHHHHHHHHHCCCcccceeccccccceeEe
Confidence 44556666663224 899999875 588999999999999 9999999999999999876655543 111
Q ss_pred ccccC-----Cce-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 157 PFLSK-----HLL-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 157 ~~~~~-----~~~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.+... ... ....|++.+... ...+ ++++|+.++.|+|++++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 74 IDGHPKRGVPGHLHLDLRFLAVAPAD-DVAP-PKSDESDAVRWFPLDELASL 123 (138)
T ss_pred ecCCCCCCCCCcEEEEEEEEEEccCc-cccC-CCCCcccccEEEcHHHhhhc
Confidence 11111 111 223455554432 1111 36689999999999999654
No 39
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.68 E-value=4.2e-16 Score=127.03 Aligned_cols=97 Identities=23% Similarity=0.212 Sum_probs=74.5
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--CceEEEEEEEEEcCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--HLLRVVPVIGILSNK 176 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--~~~~V~p~v~~l~~~ 176 (275)
+|||++|+... ++|.|++|||++|.|| ++.+||+||++||||+.....++++.+...... ....++.|++.....
T Consensus 13 ~vLL~~r~~~~--~~~~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 89 (137)
T cd03427 13 KVLLLNRKKGP--GWGGWNGPGGKVEPGE-TPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG 89 (137)
T ss_pred EEEEEEecCCC--CCCeEeCCceeCCCCC-CHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc
Confidence 89999998754 7899999999999999 999999999999999999888888877644332 333455555544321
Q ss_pred CCCCCCCChhhhhcceecChhhhhcc
Q 023911 177 KAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 177 ~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
... +.+|..++.|++++++.+.
T Consensus 90 ---~~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 90 ---EPL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred ---ccC-CCCccccceEEcHhhcccc
Confidence 122 3456678999999998754
No 40
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=4.2e-16 Score=125.90 Aligned_cols=109 Identities=28% Similarity=0.284 Sum_probs=76.1
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc--c
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF--L 159 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~--~ 159 (275)
...+|.+++++. ++ +|||++|+.. |.|+||||++++|| |+.+||+||++||||+.......++.+... +
T Consensus 6 ~~~~~~~~v~~~-~~--~vLL~~r~~~-----~~w~~PgG~v~~gE-t~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~ 76 (132)
T cd04677 6 ILVGAGVILLNE-QG--EVLLQKRSDT-----GDWGLPGGAMELGE-SLEETARRELKEETGLEVEELELLGVYSGKEFY 76 (132)
T ss_pred cccceEEEEEeC-CC--CEEEEEecCC-----CcEECCeeecCCCC-CHHHHHHHHHHHHhCCeeeeeEEEEEecCCcee
Confidence 344555656663 45 8999999753 78999999999999 999999999999999998888877655321 1
Q ss_pred c--CCc---eEE-EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 160 S--KHL---LRV-VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 160 ~--~~~---~~V-~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
. ..+ ..+ ..+++.... ..+..+.+|+.++.|+|++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~W~~~~e~~~~ 122 (132)
T cd04677 77 VKPNGDDEQYIVTLYYVTKVFG---GKLVPDGDETLELKFFSLDELPEL 122 (132)
T ss_pred ecCCCCcEEEEEEEEEEEeccC---CcccCCCCceeeEEEEChhHCccc
Confidence 1 111 122 222333222 122456689999999999998654
No 41
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.67 E-value=5.4e-16 Score=128.66 Aligned_cols=109 Identities=18% Similarity=0.111 Sum_probs=75.0
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEEecc---
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTVLEP--- 157 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~l~~--- 157 (275)
+.+|.+++++ .+| +|||++|+. .+|.|++|||++|.|| |+.+||+||++|||||.. ....+++....
T Consensus 7 ~~~v~~vi~~-~~~--~vLl~~r~~----~~~~W~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 78 (148)
T PRK09438 7 PVSVLVVIYT-PDL--GVLMLQRAD----DPDFWQSVTGSLEEGE-TPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEY 78 (148)
T ss_pred ceEEEEEEEe-CCC--eEEEEEecC----CCCcEeCCcccCCCCC-CHHHHHHHHHHHHhCcCccccceeeccccccccc
Confidence 4456666666 345 799999864 3689999999999999 999999999999999987 44444321100
Q ss_pred --c--------ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 158 --F--------LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 158 --~--------~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
+ ........+.|.+..... . .++.+|+.++.|++++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~--~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 79 EIFPHWRHRYAPGVTRNTEHWFCLALPHE--R--PVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred ccchhhhhccccccCCceeEEEEEecCCC--C--ccccCcccceeeCCHHHHHHHh
Confidence 0 011123455666654432 1 2344599999999999997653
No 42
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.67 E-value=9.6e-16 Score=132.55 Aligned_cols=112 Identities=22% Similarity=0.225 Sum_probs=85.8
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL 163 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~ 163 (275)
.||+|+.+. +++ +|||+++.. ...+++.|+||||++|+|| ++.+||+||++||||+.+..++.++.+....+...
T Consensus 48 ~~v~v~~~~-~~~--~vlLvrq~r-~~~~~~~~elPaG~ve~gE-~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~ 122 (185)
T PRK11762 48 GAVMIVPIL-DDD--TLLLIREYA-AGTERYELGFPKGLIDPGE-TPLEAANRELKEEVGFGARQLTFLKELSLAPSYFS 122 (185)
T ss_pred CEEEEEEEe-CCC--EEEEEEeec-CCCCCcEEEccceeCCCCC-CHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccC
Confidence 445554444 345 799998753 3467888999999999999 99999999999999999999999998876655556
Q ss_pred eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
..++.|++...... ....++.|..++.|+|++++.+.
T Consensus 123 ~~~~~f~a~~~~~~--~~~~~e~E~i~~~~~~~~e~~~~ 159 (185)
T PRK11762 123 SKMNIVLAEDLYPE--RLEGDEPEPLEVVRWPLADLDEL 159 (185)
T ss_pred cEEEEEEEEccccc--cCCCCCCceeEEEEEcHHHHHHH
Confidence 67788887643321 12346678889999999998764
No 43
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5.4e-16 Score=124.29 Aligned_cols=108 Identities=28% Similarity=0.263 Sum_probs=74.2
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc-ccC-C
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF-LSK-H 162 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~-~~~-~ 162 (275)
+|.+++++ ++| +|||++|+.....++|.|+||||++|+|| ++.+||+||++||||++......++..... .+. +
T Consensus 3 ~v~~vv~~-~~~--~iLl~kr~~~~~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04699 3 AVAALIVK-DVG--RILILKRSKDERTAPGKWELPGGKVEEGE-TFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVY 78 (129)
T ss_pred eEEEEEEC-CCC--cEEEEEecCCCCCCCCcCcCCccCccCCC-CHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEE
Confidence 34444555 335 89999998776567999999999999999 999999999999999988776654322211 111 1
Q ss_pred ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911 163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200 (275)
Q Consensus 163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell 200 (275)
......|.+..... ...+++|+.++.|+|++++.
T Consensus 79 ~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~ 112 (129)
T cd04699 79 NVIYLVFVCEALSG----AVKLSDEHEEYAWVTLEELA 112 (129)
T ss_pred EEEEEEEEeeecCC----cccCChhheEEEEecHHHhh
Confidence 22223333332221 12355789999999999974
No 44
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.67 E-value=1.3e-15 Score=127.23 Aligned_cols=113 Identities=25% Similarity=0.287 Sum_probs=81.2
Q ss_pred CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911 81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS 160 (275)
Q Consensus 81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~ 160 (275)
....+|-+++.. +| +|||+||+.. ++.|.|++|||++|.|| |+.+||+||++|||||++..+++++.++....
T Consensus 8 ~p~~~v~~~i~~--~~--~iLLvrR~~~--p~~g~WalPGG~ve~GE-t~eeaa~REl~EETgL~~~~~~~~~v~~~~~r 80 (145)
T COG1051 8 TPLVAVGALIVR--NG--RILLVRRANE--PGAGYWALPGGFVEIGE-TLEEAARRELKEETGLRVRVLELLAVFDDPGR 80 (145)
T ss_pred CcceeeeEEEEe--CC--EEEEEEecCC--CCCCcEeCCCccCCCCC-CHHHHHHHHHHHHhCCcccceeEEEEecCCCC
Confidence 344556555554 34 8999999874 57899999999999999 99999999999999999888999888876542
Q ss_pred C-CceEEEE-EEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 161 K-HLLRVVP-VIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 161 ~-~~~~V~p-~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
. .+.++.. |++..... .. ...+.++...+.|++++++...
T Consensus 81 d~r~~~v~~~~~~~~~~g-~~-~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 81 DPRGHHVSFLFFAAEPEG-EL-LAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred CCceeEEEEEEEEEecCC-Cc-ccCChhhHhhcceecHhHcccc
Confidence 2 2233332 22332221 11 1234468889999999998763
No 45
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1e-15 Score=123.99 Aligned_cols=104 Identities=22% Similarity=0.273 Sum_probs=73.6
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceE
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLR 165 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~ 165 (275)
|.+++++ .+| +|||++|... .++|.|+||||++|.|| ++.+||+||++||||++....+.++..... ....
T Consensus 3 ~~~vv~~-~~~--~vLl~~r~~~--~~~~~w~lPgG~ve~gE-t~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~ 73 (123)
T cd04671 3 VAAVILN-NQG--EVLLIQEAKR--SCRGKWYLPAGRMEPGE-TIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWF 73 (123)
T ss_pred EEEEEEc-CCC--EEEEEEecCC--CCCCeEECceeecCCCC-CHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEE
Confidence 3344455 345 8999999753 46899999999999999 999999999999999998888777654321 2233
Q ss_pred EEEEEEEEcCCCCCCC-CCChhhhhcceecChhhh
Q 023911 166 VVPVIGILSNKKAFTP-TPNPAEVEEVFDAPLEMF 199 (275)
Q Consensus 166 V~p~v~~l~~~~~~~~-~~~~~EV~~v~wvpl~el 199 (275)
...|.+...+. .... ..+..|+.++.|+|++++
T Consensus 74 ~~~f~a~~~~g-~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 74 RFVFTGNITGG-DLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred EEEEEEEEeCC-eEccCCCCCcceEEEEEECHHHC
Confidence 34455554331 1111 123467889999999999
No 46
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.67 E-value=1.6e-15 Score=121.32 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=75.3
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|+.. +.++|.|+||||++++|| ++.+||.||+.||+|++......++.+.+.++.....+..|.+.....
T Consensus 17 ~vll~rR~~~-~~~~g~w~~PgG~~~~gE-~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (129)
T PRK10776 17 EIFITRRAAD-AHMAGKWEFPGGKIEAGE-TPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVESWEG-- 92 (129)
T ss_pred EEEEEEecCC-CCCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEEECC--
Confidence 8999999865 467999999999999999 999999999999999987777777777666665555566555543321
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.+.+.|+.++.|++++++...
T Consensus 93 ---~~~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 93 ---EPWGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred ---ccCCccCCccEEecHHHCccC
Confidence 123457888999999998653
No 47
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.3e-15 Score=120.86 Aligned_cols=93 Identities=28% Similarity=0.369 Sum_probs=70.7
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEeccccc---CCceEEEEEEEEE
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEPFLS---KHLLRVVPVIGIL 173 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~~~~---~~~~~V~p~v~~l 173 (275)
++||++|+. .|.|.||||+++++| ++.+||+||++||||+.... ++.++.+..... .....++.|++.+
T Consensus 13 ~vLl~~r~~-----~~~w~~PgG~ve~~E-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 86 (118)
T cd04690 13 RVLLVRKRG-----TDVFYLPGGKIEAGE-TPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAEL 86 (118)
T ss_pred eEEEEEECC-----CCcEECCCCccCCCC-CHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcc
Confidence 899998864 578999999999999 99999999999999998877 888877765322 1223455555554
Q ss_pred cCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 174 SNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.. ... ..+|+.++.|+|++++...
T Consensus 87 ~~----~~~-~~~e~~~~~W~~~~e~~~~ 110 (118)
T cd04690 87 TG----EPV-PAAEIEEIRWVDYDDPADD 110 (118)
T ss_pred cC----CcC-CCchhhccEEecHHHcccc
Confidence 43 222 3479999999999998443
No 48
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.66 E-value=1.4e-15 Score=123.54 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=74.5
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC--CceEEEEEEEEEcCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--HLLRVVPVIGILSNK 176 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--~~~~V~p~v~~l~~~ 176 (275)
++||++|... ..+.|+||||++|+|| |+.+||+||++||||++.....+++.+...... ..+..+.|++.+...
T Consensus 12 ~vLlv~r~~~---~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 87 (134)
T cd03675 12 RFLLVEEETD---GGLVFNQPAGHLEPGE-SLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEH 87 (134)
T ss_pred EEEEEEEccC---CCceEECCCccCCCCC-CHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCC
Confidence 8999999764 4679999999999999 999999999999999998887777765433222 223344566766542
Q ss_pred CCCCCCCChhhhhcceecChhhhhccC
Q 023911 177 KAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 177 ~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
.. . ....+|+.++.|++++++.+..
T Consensus 88 ~~-~-~~~~~e~~~~~w~~~~el~~~~ 112 (134)
T cd03675 88 LP-D-QPLDSGIVRAHWLTLEEILALA 112 (134)
T ss_pred CC-C-CCCCCCceeeEEEeHHHHHhhh
Confidence 11 1 1234689999999999998765
No 49
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.65 E-value=2.4e-15 Score=121.77 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce-EEEEEecccccCC----ceEEEEE
Q 023911 95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV-EVVTVLEPFLSKH----LLRVVPV 169 (275)
Q Consensus 95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~-~~lg~l~~~~~~~----~~~V~p~ 169 (275)
++..+|||++|.. .|.|+||||++|.|| |+.+||+||++||||+..... ..++.+....... ...++.|
T Consensus 12 ~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E-~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f 85 (122)
T cd04666 12 GGEVEVLLVTSRR-----TGRWIVPKGGPEKDE-SPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVF 85 (122)
T ss_pred CCceEEEEEEecC-----CCeEECCCCCcCCCC-CHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEE
Confidence 3446899999864 288999999999999 999999999999999998777 8888876554322 3445555
Q ss_pred EEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911 170 IGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 170 v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~ 205 (275)
.+.+.... . .....|..++.|++++++++.-.+
T Consensus 86 ~~~~~~~~--~-~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 86 PLEVTEEL--D-EWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEeccc--c-CCcccCceEEEEecHHHHHHhcCC
Confidence 55554321 1 123356789999999999776544
No 50
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.65 E-value=1.3e-15 Score=127.00 Aligned_cols=99 Identities=24% Similarity=0.171 Sum_probs=66.8
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|.. ++.|+||||++|.|| |+.+||+||++||||+.+........+.. ....+..++.|++......
T Consensus 15 ~vLLvr~~~-----~~~W~lPGG~ve~gE-s~~~AA~REl~EETGl~v~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~- 86 (145)
T cd03672 15 KVLLVKGWK-----SKSWSFPKGKINKDE-DDHDCAIREVYEETGFDISKYIDKDDYIE-LIIRGQNVKLYIVPGVPED- 86 (145)
T ss_pred EEEEEEecC-----CCCEECCCccCCCCc-CHHHHHHHHHHHhhCccceeccccceeee-cccCCcEEEEEEEecCCCC-
Confidence 899999853 458999999999999 99999999999999998765321111111 1112234555554422211
Q ss_pred CCCCC-ChhhhhcceecChhhhhccCCC
Q 023911 179 FTPTP-NPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 179 ~~~~~-~~~EV~~v~wvpl~ell~~~~~ 205 (275)
....+ +.+|+.++.|+|++++.+....
T Consensus 87 ~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 87 TPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred cccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 11122 3579999999999999876543
No 51
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.65 E-value=2.9e-15 Score=120.48 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCc----eEEEEEEEEEc
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHL----LRVVPVIGILS 174 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~----~~V~p~v~~l~ 174 (275)
+|||++|.. .+.|.+|||++|+|| |+.+||+||++||||++......++.+.......+ ...+.|.+...
T Consensus 13 ~vLlv~~~~-----~~~~~lPGG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 86 (125)
T cd04689 13 KVLLARVIG-----QPHYFLPGGHVEPGE-TAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESS 86 (125)
T ss_pred EEEEEEecC-----CCCEECCCCcCCCCC-CHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcc
Confidence 899999853 467999999999999 99999999999999999888888887765432221 12344444443
Q ss_pred CCCCCCCCCChhhhhcceecChhhhh
Q 023911 175 NKKAFTPTPNPAEVEEVFDAPLEMFI 200 (275)
Q Consensus 175 ~~~~~~~~~~~~EV~~v~wvpl~ell 200 (275)
.........+.+|+.++.|++++++.
T Consensus 87 ~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 87 WLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred cccccCCccCccceEEEEEccHHHcc
Confidence 22111122345788999999999964
No 52
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=3.6e-15 Score=120.57 Aligned_cols=101 Identities=23% Similarity=0.179 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc--------CCceEEEEEE
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS--------KHLLRVVPVI 170 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~--------~~~~~V~p~v 170 (275)
+|||++|... ..+.|.+|||++|.|| ++.+||+||+.||||+.....+++........ ......+.|+
T Consensus 13 ~vLl~~r~~~---~~~~~~lPGG~ve~gE-t~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 88 (128)
T cd04687 13 KILLIKHHDD---GGVWYILPGGGQEPGE-TLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFE 88 (128)
T ss_pred EEEEEEEEcC---CCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEE
Confidence 8999999643 2578999999999999 99999999999999999876665554433211 1122334455
Q ss_pred EEEcCCCCCCC--CCChhhhhcceecChhhhhccCC
Q 023911 171 GILSNKKAFTP--TPNPAEVEEVFDAPLEMFIKDEN 204 (275)
Q Consensus 171 ~~l~~~~~~~~--~~~~~EV~~v~wvpl~ell~~~~ 204 (275)
+.......... ..+ .|..++.|+|++++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~~ 123 (128)
T cd04687 89 CKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDIPL 123 (128)
T ss_pred EEECCCCcccccCCCC-CCEEeeEEEcHHHhCcccc
Confidence 55543221111 223 3456899999999976543
No 53
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.64 E-value=3e-15 Score=118.26 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=77.8
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
++||++|+... .++|.|+||||+++.+| ++.+||.||+.||+|++......++...+..+.....+..|.+.....
T Consensus 14 ~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e-~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 89 (124)
T cd03425 14 RILIAQRPAGK-HLGGLWEFPGGKVEPGE-TPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSG-- 89 (124)
T ss_pred EEEEEEeCCCC-CCCCeEeCCCcccCCCC-CHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCC--
Confidence 89999998764 68999999999999999 999999999999999988777777777666665566666666655431
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
...+.|..++.|++++++.+.
T Consensus 90 ---~~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 90 ---EPQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred ---CcccccCceEEEeeHHHcccC
Confidence 123567889999999998754
No 54
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.64 E-value=3.3e-15 Score=125.90 Aligned_cols=112 Identities=20% Similarity=0.236 Sum_probs=79.5
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc---
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL--- 159 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~--- 159 (275)
+.+|.+++++ .+| +|||++|+. .+|.|++|||++++|| ++.+||.||++||||+....+.+++.+....
T Consensus 8 ~~~v~~~i~~-~~g--~vLL~~r~~----~~~~w~~P~G~~~~gE-~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~ 79 (156)
T PRK00714 8 RPNVGIILLN-RQG--QVFWGRRIG----QGHSWQFPQGGIDPGE-TPEQAMYRELYEEVGLRPEDVEILAETRDWLRYD 79 (156)
T ss_pred CCeEEEEEEe-cCC--EEEEEEEcC----CCCeEECCcccCCCCc-CHHHHHHHHHHHHhCCCccceEEEEEcCCeEEec
Confidence 3456666776 356 899999984 2589999999999999 9999999999999999998888888763210
Q ss_pred -c-------C---CceEEEEEEEEEcCC-CCCCCCC-ChhhhhcceecChhhhhcc
Q 023911 160 -S-------K---HLLRVVPVIGILSNK-KAFTPTP-NPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 160 -~-------~---~~~~V~p~v~~l~~~-~~~~~~~-~~~EV~~v~wvpl~ell~~ 202 (275)
. . .+...+.|++..... ....+.. +.+|+.++.|++++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~ 135 (156)
T PRK00714 80 LPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQ 135 (156)
T ss_pred CcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence 0 1 111345566655321 1122222 3469999999999999764
No 55
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3.8e-15 Score=117.83 Aligned_cols=91 Identities=24% Similarity=0.299 Sum_probs=71.0
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|+. |.|+||||++++|| ++.+||.||++||||+....+..++.+.. .....+.|++.+....
T Consensus 12 ~vLlv~r~~------~~w~~PgG~ve~gE-~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~~~- 79 (112)
T cd04667 12 RVLLVRKSG------SRWALPGGKIEPGE-TPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASVPPSA- 79 (112)
T ss_pred EEEEEEcCC------CcEeCCCCcCCCCC-CHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEcCCcC-
Confidence 899999863 88999999999999 99999999999999999888887776542 1223456666655321
Q ss_pred CCCCCChhhhhcceecChhhhhccC
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
....++|+.++.|+|++++.+..
T Consensus 80 --~~~~~~e~~~~~W~~~~el~~~~ 102 (112)
T cd04667 80 --QPKPSNEIADCRWLSLDALGDLN 102 (112)
T ss_pred --CCCCchheeEEEEecHHHhhhcc
Confidence 12346899999999999997643
No 56
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.63 E-value=6.5e-15 Score=119.67 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=74.0
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|... +.++|.|+||||++|.|| ++.+||+||+.||||+......+++...+..+...+.++.|.+.....
T Consensus 16 ~vLL~~R~~~-~~~~g~w~~PgG~ve~gE-~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (135)
T PRK10546 16 KILLAQRPAH-SDQAGLWEFAGGKVEPGE-SQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFHG-- 91 (135)
T ss_pred EEEEEEccCC-CCCCCcEECCcccCCCCC-CHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEecC--
Confidence 8999999754 357899999999999999 999999999999999998777777766655555555566665443321
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
. +...|..++.|++++++.+.
T Consensus 92 -~--~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 92 -E--LQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred -c--ccccccceeEEcCHHHcccC
Confidence 1 12356778899999988653
No 57
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.2e-15 Score=118.70 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC----ceEEEEEEEEEc
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH----LLRVVPVIGILS 174 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~----~~~V~p~v~~l~ 174 (275)
+|||++|.. .+.|+||||++|.|| ++.+||+||++||||+.......++.+....... ...++.|.+.+.
T Consensus 13 ~vLl~~~~~-----~~~w~lPgG~ve~gE-s~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 86 (126)
T cd04688 13 KLLVQKNPD-----ETFYRPPGGGIEFGE-SSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLL 86 (126)
T ss_pred EEEEEEeCC-----CCeEECCCccccCCC-CHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeC
Confidence 899999874 578999999999999 9999999999999999988888888766433221 223455666655
Q ss_pred CCCCCC----CCCChhhhhcceecChhhhhcc
Q 023911 175 NKKAFT----PTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 175 ~~~~~~----~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+..... ...+.+|+.++.|++++++...
T Consensus 87 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 87 DESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred CCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 432110 0124578999999999999854
No 58
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.9e-15 Score=119.22 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|... ..+.|+||||++|.|| |+.+||.||++||||+......+++.... .+...+.|++......
T Consensus 13 ~vLL~~r~~~---~~~~w~lPGG~ve~gE-s~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~~~g~- 83 (121)
T cd04669 13 EILLIRRIKP---GKTYYVFPGGGIEEGE-TPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYFLARVISGK- 83 (121)
T ss_pred EEEEEEEecC---CCCcEECCceeccCCC-CHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEEEEEEECCe-
Confidence 8999999753 2588999999999999 99999999999999999866666665543 2233566666554321
Q ss_pred CCC-------CCChhhhhcceecChhhhhccC
Q 023911 179 FTP-------TPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 179 ~~~-------~~~~~EV~~v~wvpl~ell~~~ 203 (275)
... ..+.++..++.|++++++.+..
T Consensus 84 ~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~ 115 (121)
T cd04669 84 LGLGVGEEFERQSDDNQYHPVWVDLDQLETIP 115 (121)
T ss_pred ecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence 110 0113445678999999987643
No 59
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=7.6e-15 Score=117.98 Aligned_cols=105 Identities=26% Similarity=0.304 Sum_probs=75.2
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccC---
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSK--- 161 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~--- 161 (275)
+|.++++++ + +|||++|.. .|.|+||||++++|| |+.+||+||++||||+......+++........
T Consensus 4 ~v~~~i~~~--~--~vLL~~~~~-----~~~w~~PGG~ve~gE-s~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd04672 4 DVRAAIFKD--G--KILLVREKS-----DGLWSLPGGWADVGL-SPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPP 73 (123)
T ss_pred eEEEEEEEC--C--EEEEEEEcC-----CCcEeCCccccCCCC-CHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCC
Confidence 455555653 4 899999864 688999999999999 999999999999999988666776665432211
Q ss_pred Cce--EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccC
Q 023911 162 HLL--RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 162 ~~~--~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~ 203 (275)
... ....|.+.+... .+..+ +|+.++.|++++++.+..
T Consensus 74 ~~~~~~~~~f~~~~~~~---~~~~~-~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 74 QPYQVYKLFFLCEILGG---EFKPN-IETSEVGFFALDDLPPLS 113 (123)
T ss_pred CceEEEEEEEEEEecCC---cccCC-CceeeeEEECHHHCcccc
Confidence 122 233455555432 22344 789999999999986643
No 60
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=8.9e-15 Score=116.67 Aligned_cols=106 Identities=26% Similarity=0.306 Sum_probs=73.0
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc---cc-
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF---LS- 160 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~---~~- 160 (275)
+|.+++++ ++| +|||++|+.. |.|+||||+++.|| ++.+||.||++||||++....++++.+... .+
T Consensus 4 ~v~~ii~~-~~~--~vLl~~r~~~-----~~w~lPgG~v~~~E-~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~ 74 (129)
T cd04676 4 GVTAVVRD-DEG--RVLLIRRSDN-----GLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTY 74 (129)
T ss_pred eEEEEEEC-CCC--eEEEEEecCC-----CcEECCeeccCCCC-CHHHHHHHHHHHHhCceeEeeEEEEEeecccceeec
Confidence 44454555 345 8999999863 88999999999999 999999999999999988777765543221 11
Q ss_pred -C---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 161 -K---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 161 -~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
. +......|++.+... ....+.+|+.++.|++++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 75 PNGDVRQYLDITFRCRVVGG---ELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred CCCCcEEEEEEEEEEEeeCC---eecCCCCceeEEEEEChhhCccc
Confidence 1 122223344444321 11235578899999999998764
No 61
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=2e-14 Score=117.28 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=69.2
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC-cceEEEEEecccc---cC----CceEEEEEE
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP-LLVEVVTVLEPFL---SK----HLLRVVPVI 170 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~-~~~~~lg~l~~~~---~~----~~~~V~p~v 170 (275)
+|||++|.. .|.|+||||++|+|| ++.+||+||++||||+.. .....++.+..+. .. .....+.|+
T Consensus 12 ~vLLv~~~~-----~~~w~lPgG~ve~gE-t~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
T cd04686 12 KILLLYTKR-----YGDYKFPGGGVEKGE-DHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYL 85 (131)
T ss_pred EEEEEEEcC-----CCcEECccccCCCCC-CHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEEEEEEEE
Confidence 899999864 367999999999999 999999999999999986 4455666654321 11 122345677
Q ss_pred EEEcCCCCCCCCCChhhh---hcceecChhhhhccC
Q 023911 171 GILSNKKAFTPTPNPAEV---EEVFDAPLEMFIKDE 203 (275)
Q Consensus 171 ~~l~~~~~~~~~~~~~EV---~~v~wvpl~ell~~~ 203 (275)
+.+.... ..+.+++.|. ..+.|+|++++.+..
T Consensus 86 ~~~~~~~-~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 86 CEVDAEL-GAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred EEEcCCc-CCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 7765422 2234454454 358999999998764
No 62
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.59 E-value=2.7e-14 Score=116.09 Aligned_cols=105 Identities=23% Similarity=0.104 Sum_probs=75.7
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCC
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKH 162 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~ 162 (275)
+.+|.+++++ ++ +|||.+|... ...|.|+||||++|.|| ++.+||+||++||||++......++..... ..
T Consensus 13 ~~~v~~ii~~--~~--~vLL~kr~~~--~~~g~w~lPgG~ve~gE-~~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~ 83 (130)
T cd04511 13 KIIVGCVPEW--EG--KVLLCRRAIE--PRHGFWTLPAGFMENGE-TTEQGALRETWEEAGARVEIDGLYAVYSVP--HI 83 (130)
T ss_pred cEEEEEEEec--CC--EEEEEEecCC--CCCCeEECCcccccCCC-CHHHHHHHHHHHHhCCEEEeeeEEEEEecC--Cc
Confidence 3444444554 34 8999999753 35789999999999999 999999999999999987666666654321 22
Q ss_pred ceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhh
Q 023911 163 LLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFI 200 (275)
Q Consensus 163 ~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell 200 (275)
....+.|++.+... . .. ...|..++.|++++++.
T Consensus 84 ~~~~~~f~~~~~~~-~--~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 84 SQVYMFYRARLLDL-D--FA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred eEEEEEEEEEEcCC-c--cc-CCcchhceEEECHHHCC
Confidence 23455677776542 2 22 23678899999999985
No 63
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.59 E-value=2.3e-14 Score=112.01 Aligned_cols=108 Identities=29% Similarity=0.364 Sum_probs=78.6
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc--CCc
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS--KHL 163 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~--~~~ 163 (275)
+.+++++. ++ +|||++|+.. ++|.|+||||+++.+| ++.++|+||++||+|+.......++.+..... ...
T Consensus 3 ~~~i~~~~-~~--~ill~kr~~~---~~~~~~~p~G~~~~~e-~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd02883 3 VGAVILDE-DG--RVLLVRRADS---PGGLWELPGGGVEPGE-TLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEH 75 (123)
T ss_pred eEEEEECC-CC--CEEEEEEcCC---CCCeEeCCcccccCCC-CHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCce
Confidence 33444553 34 7999999875 7899999999999999 99999999999999998765555555443332 344
Q ss_pred eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 164 LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 164 ~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
..+..|.+.+..... . ..+..|+.++.|++++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~-~-~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 76 AVVFVFLARLVGGEP-T-LLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEEEEEEEeCCCCc-C-CCCCCccceEEEEcHHHCccc
Confidence 456666666654221 1 245678899999999999863
No 64
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=3.8e-14 Score=113.69 Aligned_cols=97 Identities=22% Similarity=0.356 Sum_probs=76.1
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+||+.+|... +.+.|.|+||||++|.|| ++.++|.||+.||+|+.......++...+.++.....++.|.+...+..
T Consensus 17 ~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge-~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~- 93 (128)
T TIGR00586 17 EIIITRRADG-HMFAKLLEFPGGKEEGGE-TPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGGP- 93 (128)
T ss_pred EEEEEEEeCC-CCCCCeEECCCcccCCCC-CHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCCC-
Confidence 8999999754 468999999999999999 9999999999999999877666677776666666666777776654321
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+...|..++.|++++++.+.
T Consensus 94 ----~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 94 ----PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred ----cCcccccccEEeCHHHCCcc
Confidence 12345678899999988764
No 65
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.58 E-value=1.3e-14 Score=131.96 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=83.1
Q ss_pred CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911 79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158 (275)
Q Consensus 79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~ 158 (275)
+.....+|++++.+ ++ +|||.+|... .+|.|++|||++|+|| |+++||+||++|||||.+..+++++..+..
T Consensus 128 yp~~~paViv~V~~--~~--~iLL~rr~~~---~~g~wslPgG~vE~GE-s~eeAa~REv~EEtGl~v~~~~~~~s~~~~ 199 (256)
T PRK00241 128 YPRIAPCIIVAVRR--GD--EILLARHPRH---RNGVYTVLAGFVEVGE-TLEQCVAREVMEESGIKVKNLRYVGSQPWP 199 (256)
T ss_pred CCCCCCEEEEEEEe--CC--EEEEEEccCC---CCCcEeCcccCCCCCC-CHHHHhhhhhhhccCceeeeeEEEEeEeec
Confidence 33334456665544 34 8999998753 2799999999999999 999999999999999999988888876432
Q ss_pred ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.. ...++.|.+..... .+.++++|+.++.|++++++...
T Consensus 200 ~p--~~lm~~f~a~~~~~---~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 200 FP--HSLMLGFHADYDSG---EIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred CC--CeEEEEEEEEecCC---cccCCcccEEEEEEECHHHCccc
Confidence 22 23456677766532 24567789999999999998543
No 66
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.58 E-value=3.8e-14 Score=115.69 Aligned_cols=99 Identities=20% Similarity=0.110 Sum_probs=64.8
Q ss_pred CCceEEEEEEeCCC--CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEE
Q 023911 95 AGDLRVILTKRSSR--MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGI 172 (275)
Q Consensus 95 ~g~~~VLL~rRs~~--l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~ 172 (275)
++.++|||++|... .+...|.|+||||++|.+| ++.+||+||++||||++.. ...+. +..+....+..++.|++.
T Consensus 12 ~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E-~~~~aA~REl~EEtGl~~~-~~~~~-l~~~~~~~~~~v~~fl~~ 88 (126)
T cd04662 12 DGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGE-DPLLAAKREFSEETGFCVD-GPFID-LGSLKQSGGKVVHAWAVE 88 (126)
T ss_pred CCcEEEEEEEccCccccCCCCCEEECCcccCCCCc-CHHHHHHHHHHHHhCCcce-eeEEe-EEEEECCCCeEEEEEEEE
Confidence 46679999998432 2456889999999999999 9999999999999999865 22222 222222233345665555
Q ss_pred EcCCC-------------CCCCCCC-hhhhhcceecCh
Q 023911 173 LSNKK-------------AFTPTPN-PAEVEEVFDAPL 196 (275)
Q Consensus 173 l~~~~-------------~~~~~~~-~~EV~~v~wvpl 196 (275)
.+... ...+... .+|.+++.|+|+
T Consensus 89 ~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 89 ADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred ecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 43210 1112222 477788888773
No 67
>PLN02791 Nudix hydrolase homolog
Probab=99.57 E-value=2.5e-14 Score=146.00 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=89.6
Q ss_pred cCCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCC--cceEEEEE
Q 023911 78 RFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDP--LLVEVVTV 154 (275)
Q Consensus 78 ~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~--~~~~~lg~ 154 (275)
..+..+.||.|.|++.++| +|||+||+..+.+|||.|++ +|||++.|| +..+||+||++||+||.. +.+..++.
T Consensus 27 ~~Gl~HrAvhVwIfn~~~g--elLLQkRS~~K~~~PG~WDiS~gGHv~aGE-s~~eAA~REL~EELGI~l~~~~l~~l~~ 103 (770)
T PLN02791 27 RDGDYHRAVHVWIYSESTQ--ELLLQRRADCKDSWPGQWDISSAGHISAGD-TSLLSAQRELEEELGIILPKDAFELLFV 103 (770)
T ss_pred cCCCceEEEEEEEEECCCC--eEEEEEecCCCCCCCCcccCcCCCCCCCCC-CHHHHHHHHHHHHhCCCCChhheeeeee
Confidence 3467899999999984345 89999999999999999999 799999999 999999999999999974 34555665
Q ss_pred eccc-c-cC----CceEEEEEEEEEcC-CCCCCCCCChhhhhcceecChhhhhc
Q 023911 155 LEPF-L-SK----HLLRVVPVIGILSN-KKAFTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 155 l~~~-~-~~----~~~~V~p~v~~l~~-~~~~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
+... . .. .+...+.|++.... .+....+++++||+++.|+++++|.+
T Consensus 104 ~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~ 157 (770)
T PLN02791 104 FLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157 (770)
T ss_pred EEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence 3211 1 11 11233444443222 11123567899999999999999974
No 68
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.57 E-value=1.6e-14 Score=125.26 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=82.5
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCC----CCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRM----STHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS 160 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l----~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~ 160 (275)
+|.|++++.+++ +|||+++-... +..++.|+||||++|+|| ++++||+||++||||+....++.++.+.....
T Consensus 46 ~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE-~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g 122 (185)
T TIGR00052 46 AAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGE-SPEDVARREAIEEAGYQVKNLRKLLSFYSSPG 122 (185)
T ss_pred eEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCCC-CHHHHHHHHccccccceecceEEEEEEEcCCC
Confidence 444444543334 78888754321 114678999999999999 99999999999999999999998887765555
Q ss_pred CCceEEEEEEEEEcCCCCCC-CCCChhhhhcceecChhhhhcc
Q 023911 161 KHLLRVVPVIGILSNKKAFT-PTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 161 ~~~~~V~p~v~~l~~~~~~~-~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.+...++.|++.+....... ...+++|..++.|+|++++.+.
T Consensus 123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~ 165 (185)
T TIGR00052 123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW 165 (185)
T ss_pred CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence 55667888888865421111 1234466678999999998764
No 69
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.53 E-value=9.4e-14 Score=122.11 Aligned_cols=116 Identities=22% Similarity=0.163 Sum_probs=84.0
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCC-----CCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTH-----SGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE 156 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~-----~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~ 156 (275)
..++++|+ ++.+++ +|+|++.-. .... +-.|+||+|++|+|| ++.+||+||+.||||+....++.++.+.
T Consensus 49 ~~~V~il~-~~~~~~--~vlLvrQyR-~~~~~~~~~~~~lE~PAG~vd~gE-~p~~aA~REL~EETGy~a~~~~~l~~~~ 123 (202)
T PRK10729 49 GHAAVLLP-FDPVRD--EVVLIEQIR-IAAYDTSETPWLLEMVAGMIEEGE-SVEDVARREAIEEAGLIVGRTKPVLSYL 123 (202)
T ss_pred CCeEEEEE-EECCCC--EEEEEEeee-cccccCCCCCeEEEccceEcCCCC-CHHHHHHHHHHHHhCceeeEEEEEEEEE
Confidence 34444444 442334 788877532 2221 246899999999999 9999999999999999999888888776
Q ss_pred ccccCCceEEEEEEEEEcCC--CCCCCCCChhhhhcceecChhhhhcc
Q 023911 157 PFLSKHLLRVVPVIGILSNK--KAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 157 ~~~~~~~~~V~p~v~~l~~~--~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+....+...++.|++..... .......+++|..++.|+|++++.+.
T Consensus 124 ~spg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~ 171 (202)
T PRK10729 124 ASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 171 (202)
T ss_pred cCCCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence 66666777889999886321 11112457788889999999999765
No 70
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.52 E-value=2e-13 Score=123.30 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcC-CccCCCCCC----------------CHHHHHHHHHHHH
Q 023911 79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLP-GGKAEEGDR----------------DDGDTATREAKEE 141 (275)
Q Consensus 79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfP-GG~vE~gE~----------------s~~eaAlRE~~EE 141 (275)
.+..+.||.|+|++ .+| +|||+||+..+..+||.|+.. |||+..|++ +..+||+||++||
T Consensus 52 ~gl~Hra~~v~i~n-~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EE 128 (247)
T PLN02552 52 RGLLHRAFSVFLFN-SKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHE 128 (247)
T ss_pred CCceEEEEEEEEEc-CCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHH
Confidence 35678899998888 456 899999999999999999664 455544420 1678999999999
Q ss_pred hCCCCcc-----eEEEEEecccccCC------c----eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 142 IGLDPLL-----VEVVTVLEPFLSKH------L----LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 142 tGL~~~~-----~~~lg~l~~~~~~~------~----~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+||+... +.+++.+....... + ..+..++.. .......++++++||+++.|++++++.+.
T Consensus 129 lGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~ 203 (247)
T PLN02552 129 LGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEM 203 (247)
T ss_pred hCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence 9998543 55565443322111 1 222222222 11112245789999999999999999875
No 71
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.52 E-value=1.6e-13 Score=129.40 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=74.8
Q ss_pred EEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec---cc--
Q 023911 84 AAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE---PF-- 158 (275)
Q Consensus 84 aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~---~~-- 158 (275)
.+|.++++. +| +|||++|+.. ..+|.|+||||++|+|| ++.+||+||++|||||++....+.+.+. .+
T Consensus 204 vtv~avv~~--~g--~VLLvrR~~~--p~~g~W~lPGG~ve~gE-t~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 204 VTVDAVVVQ--SG--HVLLVRRRAE--PGKGLWALPGGFLEQDE-TLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred eEEEEEEEE--CC--EEEEEEecCC--CCCCeEECCcccCCCCC-CHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 344344444 45 8999999864 35899999999999999 9999999999999999875544433321 11
Q ss_pred cc---CCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 159 LS---KHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 159 ~~---~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.. ......+.|.+.+........ ...+|+.++.|+|++++.+.
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~~~~~-~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGELPRV-KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCccCcc-CCCCceeeEEEEEHHHhhhh
Confidence 11 112334556666543221112 24478999999999998754
No 72
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=2.6e-13 Score=111.63 Aligned_cols=113 Identities=16% Similarity=0.086 Sum_probs=73.2
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC-cceEEEEEecccc----c
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP-LLVEVVTVLEPFL----S 160 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~-~~~~~lg~l~~~~----~ 160 (275)
+-+++++ .+| +|||++|.......++.|.+|||+++.|| ++.+||.||++||||+.. .....+......+ .
T Consensus 3 ~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~gE-~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~ 78 (133)
T cd04685 3 ARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPGE-SPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV 78 (133)
T ss_pred EEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCCC-CHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc
Confidence 4444555 355 89999987643346889999999999999 999999999999999987 4444443322211 1
Q ss_pred CCceEEEEEEEEEcCCCCCCCC---CChhhhhcceecChhhhhcc
Q 023911 161 KHLLRVVPVIGILSNKKAFTPT---PNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 161 ~~~~~V~p~v~~l~~~~~~~~~---~~~~EV~~v~wvpl~ell~~ 202 (275)
......+.|++.+......... ...+++..+.|++++++.+.
T Consensus 79 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 79 DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 1112234555555431111111 11234668999999999775
No 73
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.49 E-value=5.1e-13 Score=107.94 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=73.5
Q ss_pred EEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceE
Q 023911 86 VLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLR 165 (275)
Q Consensus 86 Vlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~ 165 (275)
|+|+++. ++ ++||++|. .+.|+||||++|.|| ++.+||+||++||+|+....+..++.+..........
T Consensus 3 v~vi~~~--~~--~vLl~~~~------~~~w~lPgG~ve~gE-~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~ 71 (118)
T cd04665 3 VLVICFY--DD--GLLLVRHK------DRGWEFPGGHVEPGE-TIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFE 71 (118)
T ss_pred EEEEEEE--CC--EEEEEEeC------CCEEECCccccCCCC-CHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEE
Confidence 4444444 24 79999875 356999999999999 9999999999999999999999998875433333444
Q ss_pred EEEEEEEEcCCCCCCCCCChhhhhcceecChhhh
Q 023911 166 VVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMF 199 (275)
Q Consensus 166 V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~el 199 (275)
...|.+.+...... . ...|+....|++....
T Consensus 72 ~~~y~a~~~~~~~~--~-~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 72 TLVYPAVSAQLEEK--A-SYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEEEEEecccc--c-ccccccCcEEeccCCc
Confidence 55666666543221 2 3489999999986544
No 74
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.47 E-value=4e-13 Score=109.88 Aligned_cols=95 Identities=19% Similarity=0.043 Sum_probs=67.0
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec-----cccc-------CCceEE
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE-----PFLS-------KHLLRV 166 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~-----~~~~-------~~~~~V 166 (275)
++||++|+.. ..|.|+||||++|+|| |+.+||.||++||||+.... .+++..+ .... ..+..+
T Consensus 14 ~~Llvk~~~~---~~g~W~fPgG~ve~gE-t~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (132)
T cd04661 14 LVLLVQQKVG---SQNHWILPQGKREEGE-TLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV 88 (132)
T ss_pred EEEEEEeecC---CCCeeECCcccccCCC-CHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence 7899998642 3689999999999999 99999999999999997653 3333211 1010 112346
Q ss_pred EEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 167 VPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 167 ~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+.|.+.+.+. .+.++ +|+.++.|++++++.+.
T Consensus 89 ~~f~~~~~~g---~~~~~-~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 89 FFFKARYMSG---QFELS-QNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEEEEEecC---ccccC-CCcceeEecCHHHHHhh
Confidence 6666766442 12233 78999999999998764
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.43 E-value=1.8e-12 Score=120.15 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=76.0
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+|||++|... +.++|.|+||||++|.|| ++.+||.||++||+|+.......++...+.++.....+++|.+.....
T Consensus 18 ~vLL~kR~~~-~~~~g~w~~PgG~ve~gE-~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~-- 93 (312)
T PRK08999 18 RILLARRPEG-KHQGGLWEFPGGKVEPGE-TVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG-- 93 (312)
T ss_pred eEEEEEecCC-CCCCCeEECCccCCCCCC-CHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC--
Confidence 8999999754 468999999999999999 999999999999999987776767776666665556666665543321
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.++..|..++.|++++++.+-
T Consensus 94 ---~~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 94 ---EPHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred ---cccCccCCccEEecHHHcccC
Confidence 123467788899999998764
No 76
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.42 E-value=2e-12 Score=112.81 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=81.4
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCC------CCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEec
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMST------HSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLE 156 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~------~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~ 156 (275)
.+++++ +++.+++ +|+|++.=. ... ..-.|+||+|.+|+ + ++.+||+||+.||||+....++.++.+.
T Consensus 46 ~~v~Vl-~~~~~~~--~vvLvrQyR-~~v~~~~~~~~~~lElPAG~vd~-~-~p~~aA~REL~EETGy~a~~~~~l~~~~ 119 (191)
T PRK15009 46 NGATIL-LYNAKKK--TVVLIRQFR-VATWVNGNESGQLIETCAGLLDN-D-EPEVCIRKEAIEETGYEVGEVRKLFELY 119 (191)
T ss_pred CEEEEE-EEECCCC--EEEEEEccc-ccccccCCCCceEEEEeccccCC-C-CHHHHHHHHHHHhhCCccceEEEeeEEE
Confidence 344434 4443344 788876533 222 12247899999996 4 6999999999999999999999998877
Q ss_pred ccccCCceEEEEEEEEEcCCCCCC-CCCChhhhhcceecChhhhhcc
Q 023911 157 PFLSKHLLRVVPVIGILSNKKAFT-PTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 157 ~~~~~~~~~V~p~v~~l~~~~~~~-~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+....+...++.|++......... ...+++|..+++|+|++++.+.
T Consensus 120 ~spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~ 166 (191)
T PRK15009 120 MSPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM 166 (191)
T ss_pred cCCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence 666667778899998864321111 1346788899999999998765
No 77
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.40 E-value=4.1e-12 Score=107.45 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
++||+++.. ..|.||||++|+|| |+.+||+||++||||+.+..++.++.+...........+.|+|.+...
T Consensus 36 ~~LL~~~~~------~~~elPgG~vE~gE-t~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~-- 106 (156)
T TIGR02705 36 QWLLTEHKR------RGLEFPGGKVEPGE-TSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL-- 106 (156)
T ss_pred EEEEEEEcC------CcEECCceecCCCC-CHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc--
Confidence 688887653 23999999999999 999999999999999999999999987665544555667777877632
Q ss_pred CCCCCChhhhhcce-ecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVF-DAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~-wvpl~ell~~ 202 (275)
. .. +|..++. +++++++.+.
T Consensus 107 -~--~~-~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 107 -E--SK-DDYLETKGPVLLQEIPDI 127 (156)
T ss_pred -c--cC-CCceeeEeEEEHHHHHHH
Confidence 1 12 4545555 7898888664
No 78
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=6.3e-12 Score=101.64 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=45.3
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL 147 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~ 147 (275)
..+||+|+..+ + .+||.+|+.. ..+|.|+||||++|+|| ++.+||.||+.||+|+...
T Consensus 4 ~~~av~vl~~~--~---~~lL~~r~~~--~~~~~w~lPgG~ve~~E-~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 4 LPVVVALLPVD--D---GLLVIRRGIE--PGRGKLALPGGFIELGE-TWQDAVARELLEETGVAVD 61 (118)
T ss_pred cEEEEEEEEEC--C---CEEEEEeecC--CCCCeEECCceecCCCC-CHHHHHHHHHHHHHCCccc
Confidence 34555554332 3 3677777653 46899999999999999 9999999999999999865
No 79
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.38 E-value=5.1e-12 Score=103.32 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=59.0
Q ss_pred CceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce-EEEEEecccccCCceEEEEEEEEEc
Q 023911 96 GDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV-EVVTVLEPFLSKHLLRVVPVIGILS 174 (275)
Q Consensus 96 g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~-~~lg~l~~~~~~~~~~V~p~v~~l~ 174 (275)
+.++|++.+... +.|.||||++|+|| ++.+||+||++||||+..... ..++............++.+++.+.
T Consensus 12 ~~~~ll~~r~~~------~~~~lPgG~ve~~E-~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (126)
T cd04663 12 EVLELLVFEHPL------AGFQIVKGTVEPGE-TPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEVD 84 (126)
T ss_pred ceEEEEEEEcCC------CcEECCCccCCCCC-CHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEec
Confidence 346777766543 34999999999999 999999999999999986221 1222222221112223444444442
Q ss_pred ----CCCCCCCCCChhhhhcceecChhhhhc
Q 023911 175 ----NKKAFTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 175 ----~~~~~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
+.....+..+..+.-.++|+|++++.+
T Consensus 85 ~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 85 QDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred CCCcccccCcccCCCCceEEEEEEccccccc
Confidence 111111222334445677999999843
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.37 E-value=5.7e-12 Score=100.23 Aligned_cols=112 Identities=25% Similarity=0.277 Sum_probs=71.6
Q ss_pred EEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHH-HHHHHHHHHhCCCCc--ceEEEEEecccccC
Q 023911 85 AVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGD-TATREAKEEIGLDPL--LVEVVTVLEPFLSK 161 (275)
Q Consensus 85 AVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~e-aAlRE~~EEtGL~~~--~~~~lg~l~~~~~~ 161 (275)
++.+++..... .+|++++|.... |.|+||||++|.+| ++.+ ||+||++||||+... ....++.+......
T Consensus 13 ~~~~~~~~~~~--~~vl~~~~~~~~----~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 85 (161)
T COG0494 13 AVAVLVGRDGP--GEVLLAQRRDDG----GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVKDERLELLGEFPPSPGD 85 (161)
T ss_pred eEEEEEecCCC--CEEeEEEccccC----CceecCCcccCCCC-chHHHHHHHHHHHHhCCeeeeecceeeeeccCcccC
Confidence 44444444222 389999998743 69999999999999 5577 999999999999888 67777776654432
Q ss_pred Cc-----eEEEEEEEEEcCCCCCCCCCC---hhhhhcceecChhhhhccC
Q 023911 162 HL-----LRVVPVIGILSNKKAFTPTPN---PAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 162 ~~-----~~V~p~v~~l~~~~~~~~~~~---~~EV~~v~wvpl~ell~~~ 203 (275)
.. .....+..............+ ..|...+.|+++.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 86 GSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred cccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence 21 112222222211111111111 3578889999998877654
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.35 E-value=8.1e-12 Score=115.24 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEc
Q 023911 95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILS 174 (275)
Q Consensus 95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~ 174 (275)
+++.+|+|+++... ....-.|+||||++|++++++.+||+||++||||+.+...+++.......+.++..++|..+..+
T Consensus 140 ~ge~~VlLVrQ~R~-pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~d 218 (291)
T PLN03143 140 EGETYAVLTEQVRV-PVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCD 218 (291)
T ss_pred CCCEEEEEEEeEec-CCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccC
Confidence 45557999988753 23344799999999986449999999999999999764333222211111233444555554443
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.30 E-value=1.9e-11 Score=106.22 Aligned_cols=46 Identities=33% Similarity=0.405 Sum_probs=41.3
Q ss_pred CCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC
Q 023911 95 AGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP 146 (275)
Q Consensus 95 ~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~ 146 (275)
++.++||+++|+. .|+|+||||++|++| ++.+||+||+.||||+..
T Consensus 46 ~~~l~vLl~~r~~-----~g~walPGG~v~~~E-~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 46 KPILQFVAIKRPD-----SGEWAIPGGMVDPGE-KISATLKREFGEEALNSL 91 (186)
T ss_pred CCeeEEEEEEeCC-----CCcCcCCeeeccCCC-CHHHHHHHHHHHHHcccc
Confidence 5578999999965 589999999999999 999999999999997653
No 83
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.24 E-value=6.9e-11 Score=102.00 Aligned_cols=105 Identities=28% Similarity=0.338 Sum_probs=73.5
Q ss_pred cCCceEEEEEEeCCCCCCCCCcE--EcCCccCCCCCCCHHHHHHHHHHHHhCCCCcc--eEEEEEecccccCCceEEEEE
Q 023911 94 DAGDLRVILTKRSSRMSTHSGEI--SLPGGKAEEGDRDDGDTATREAKEEIGLDPLL--VEVVTVLEPFLSKHLLRVVPV 169 (275)
Q Consensus 94 ~~g~~~VLL~rRs~~l~~~~G~w--sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~--~~~lg~l~~~~~~~~~~V~p~ 169 (275)
.+|+++|+|++.= |.--|.+ +||.|.+|.|| |+.+||+||++||||+.-.. ......+++-++.....+..+
T Consensus 84 ~dG~~~ivL~kQf---RpP~Gk~ciElPAGLiD~ge-~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v 159 (225)
T KOG3041|consen 84 SDGKPYIVLVKQF---RPPTGKICIELPAGLIDDGE-DFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVV 159 (225)
T ss_pred cCCcEEEEEEEee---cCCCCcEEEEcccccccCCC-chHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEE
Confidence 4788999999853 3345554 57999999999 99999999999999997332 234555666565555444443
Q ss_pred EEEEcCCCCCC--CCCChhhhhcceecChhhhhcc
Q 023911 170 IGILSNKKAFT--PTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 170 v~~l~~~~~~~--~~~~~~EV~~v~wvpl~ell~~ 202 (275)
-...+..+... ..++..|..+++-+|+++|.+.
T Consensus 160 ~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 160 DIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred EecCCCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 32222222222 3567789999999999998764
No 84
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.8e-11 Score=110.18 Aligned_cols=111 Identities=20% Similarity=0.282 Sum_probs=86.1
Q ss_pred CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc
Q 023911 79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF 158 (275)
Q Consensus 79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~ 158 (275)
+..-.-+|++++.++ + ++||.+|..+ ++|.++.-.|.||+|| |+++|..||++||+||.+.++++++..++-
T Consensus 140 fPR~dP~vIv~v~~~--~--~ilLa~~~~h---~~g~yS~LAGFVE~GE-TlE~AV~REv~EE~Gi~V~~vrY~~SQPWP 211 (279)
T COG2816 140 FPRIDPCVIVAVIRG--D--EILLARHPRH---FPGMYSLLAGFVEPGE-TLEQAVAREVFEEVGIKVKNVRYVGSQPWP 211 (279)
T ss_pred CCCCCCeEEEEEecC--C--ceeecCCCCC---CCcceeeeeecccCCc-cHHHHHHHHHHHhhCeEEeeeeEEeccCCC
Confidence 333445666666553 3 4888887764 4999999999999999 999999999999999999999999988766
Q ss_pred ccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 159 LSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+..+. +.-|.+..... .+++|..|++++.|+..++.+..
T Consensus 212 fP~SL--Migf~aey~sg---eI~~d~~Eleda~WFs~~evl~~ 250 (279)
T COG2816 212 FPHSL--MLGFMAEYDSG---EITPDEGELEDARWFSRDEVLPA 250 (279)
T ss_pred Cchhh--hhhheeeeccc---cccCCcchhhhccccCHhHHhhh
Confidence 65443 44455665543 25778899999999999995544
No 85
>PLN02839 nudix hydrolase
Probab=99.17 E-value=2.2e-10 Score=108.05 Aligned_cols=123 Identities=23% Similarity=0.201 Sum_probs=91.1
Q ss_pred CCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEE-cCCccCCCCCCCHHHHHHHHHHHHhCCCCc---ceEEEEE
Q 023911 79 FRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEIS-LPGGKAEEGDRDDGDTATREAKEEIGLDPL---LVEVVTV 154 (275)
Q Consensus 79 ~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~ws-fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~---~~~~lg~ 154 (275)
++.+..+|.+--+...+|+.++++.||+.++..+||.|. ..||.+..|| ++.+|++||++||.||+.. .+.-.|.
T Consensus 199 fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGe-sp~etliREa~EEAgLp~~l~~~~~~~G~ 277 (372)
T PLN02839 199 FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGI-SCGENLVKECEEEAGISKAIADRAIAVGA 277 (372)
T ss_pred cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCC-CHHHHHHHHHHHHcCCCHHHHhcceEeEE
Confidence 356677788755543467779999999999999999997 5899999999 9999999999999999865 4555666
Q ss_pred eccccc-CCce-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 155 LEPFLS-KHLL-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 155 l~~~~~-~~~~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+.+... ..++ .-.-|+..+.-+..+.++++.+||+++.+++++++.+.
T Consensus 278 VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~ 327 (372)
T PLN02839 278 VSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANV 327 (372)
T ss_pred EEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence 655431 1121 11122333332345667888999999999999999754
No 86
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.17 E-value=1.2e-11 Score=113.34 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc-
Q 023911 80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF- 158 (275)
Q Consensus 80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~- 158 (275)
....-.|+++|.+. +| ..+|..|. ++.-+|.|+.++|.+|+|| |++|||+||++||+|++++.+.+....++-
T Consensus 184 Pr~dPvVIm~li~~-d~--~~~LL~R~--~r~~~gl~t~lAGFlEpGE-S~eeav~REtwEEtGi~V~~I~~~asQPWP~ 257 (345)
T KOG3084|consen 184 PRTDPVVIMLLIDH-DG--KHALLGRQ--KRYPPGLWTCLAGFLEPGE-SIEEAVRRETWEETGIEVEVISYVASQPWPL 257 (345)
T ss_pred cCCCCeEEEEEEcC-CC--CEeeeecc--cCCCCchhhhhhccCCccc-cHHHHHHHHHHHHhCceeeeEeeeecCCCCC
Confidence 33455677777774 45 45556664 3556899999999999999 999999999999999999999988777655
Q ss_pred ccCCceEEEEEEEEEcCCCCCCCCCChh-hhhcceecChhhhhcc
Q 023911 159 LSKHLLRVVPVIGILSNKKAFTPTPNPA-EVEEVFDAPLEMFIKD 202 (275)
Q Consensus 159 ~~~~~~~V~p~v~~l~~~~~~~~~~~~~-EV~~v~wvpl~ell~~ 202 (275)
+..+.+.-..-++..+ .....|.+ |..+..|+.-+++.+.
T Consensus 258 ~p~SLMIgc~ala~~~----~~I~vd~dlEleDaqwF~r~ev~~a 298 (345)
T KOG3084|consen 258 MPQSLMIGCLALAKLN----GKISVDKDLELEDAQWFDREEVKSA 298 (345)
T ss_pred CchHHHHHHHHHHhhC----CccccCcchhhhhcccccHHHHHHH
Confidence 2222111011112222 13356777 9999999999988764
No 87
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.01 E-value=9.2e-10 Score=93.52 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=86.1
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEc-CCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccc---
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISL-PGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPF--- 158 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsf-PGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~--- 158 (275)
+.|.-+.||+ .+| ++|++||+..++.|||.|.- -.||--+|| +..+||+|-+.+|+||.+.....+..++.+
T Consensus 33 HrAFS~~lFn-e~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~e-s~~~A~~rRl~~ELGie~~~~d~~~il~rf~Yr 108 (185)
T COG1443 33 HRAFSSFLFN-ERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPGE-SNEDAARRRLAYELGIEPDQYDKLEILPRFRYR 108 (185)
T ss_pred HhhhheeEEC-CCC--ceeeehhhhhcccCcccccccccCCCcCCC-chHHHHHHHHHHHhCCCCcccCccccccceEEe
Confidence 5566677787 567 89999999999999999975 357777999 999999999999999998854433333333
Q ss_pred cc-CCc---eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911 159 LS-KHL---LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 159 ~~-~~~---~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~ 205 (275)
.. ..+ ..|.|+++.-... .+.+|++||.+..|+..++|.+.-..
T Consensus 109 A~~~~~~~E~Eic~V~~~~~~~---~~~~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 109 AADPDGIVENEICPVLAARLDS---ALDPNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred ccCCCCcceeeeeeEEEEeecC---CCCCChHHhhheeccCHHHHHHhhcC
Confidence 21 122 2466665433321 35679999999999999999876543
No 88
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.96 E-value=2.5e-09 Score=88.30 Aligned_cols=118 Identities=26% Similarity=0.249 Sum_probs=76.4
Q ss_pred CCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc
Q 023911 80 RPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL 159 (275)
Q Consensus 80 ~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~ 159 (275)
+.|..|-.|++.. ++...+|||+.=+. ++-.|-||+|++|++| +..+||+||++||.|+.....++++.+..+.
T Consensus 7 G~r~vagCi~~r~-~~~~ieVLlvsSs~----~~~~wi~PKGGwE~dE-~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~ 80 (145)
T KOG2839|consen 7 GFRLVAGCICYRS-DKEKIEVLLVSSSK----KPHRWIVPKGGWEPDE-SVEEAALRETWEEAGVKGKLGRLLGGFEDFL 80 (145)
T ss_pred CcEEEEEeeeeee-cCcceEEEEEecCC----CCCCccCCCCCCCCCC-CHHHHHHHHHHHHhCceeeeeccccchhhcc
Confidence 3455555555444 23357899997554 3556999999999999 9999999999999999988888666665554
Q ss_pred cC-CceEEEEEEEEEcCCCCCCCCC-ChhhhhcceecChhhhhccC
Q 023911 160 SK-HLLRVVPVIGILSNKKAFTPTP-NPAEVEEVFDAPLEMFIKDE 203 (275)
Q Consensus 160 ~~-~~~~V~p~v~~l~~~~~~~~~~-~~~EV~~v~wvpl~ell~~~ 203 (275)
+. +...+..++..+...+.+..-+ ...|..+..|+.+++..+.-
T Consensus 81 ~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~ 126 (145)
T KOG2839|consen 81 SKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELC 126 (145)
T ss_pred ChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHH
Confidence 32 2222333333333222222111 12347788999998876643
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.93 E-value=1.8e-08 Score=79.03 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
++||.||... +.++|.|+||||.++.++ +..++..||+.||.++ ....++.+.+.+++....+++|.+.+....
T Consensus 15 ~~ll~kR~~~-gl~~glwefP~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~~~~~~- 88 (118)
T cd03431 15 RVLLEKRPEK-GLLAGLWEFPSVEWEEEA-DGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLARLEGDL- 88 (118)
T ss_pred eEEEEECCCC-CCCCcceeCCCccccCCc-CHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEEEeCCC-
Confidence 8999999754 689999999999999888 8888888999999875 223356666777777777888877654310
Q ss_pred CCCCCChhhhhcceecChhhhhcc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
.+..++.|++++++.+.
T Consensus 89 -------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 89 -------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred -------cCccccEEccHHHHhhC
Confidence 23456789999988653
No 90
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=3e-08 Score=91.06 Aligned_cols=120 Identities=23% Similarity=0.268 Sum_probs=83.7
Q ss_pred CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEeccccc
Q 023911 81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLS 160 (275)
Q Consensus 81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~ 160 (275)
..+++|...+.+- ++ +|++++-....-...|.|-+|+|+++++| ++.++|+||++||||++....+++..-.....
T Consensus 113 sh~vgvg~~V~n~-~~--eVlVv~e~d~~~~~~~~wK~ptG~v~~~e-~i~~gavrEvkeetgid~ef~eVla~r~~H~~ 188 (295)
T KOG0648|consen 113 SHRVGVGAFVLNK-KK--EVLVVQEKDGAVKIRGGWKLPTGRVEEGE-DIWHGAVREVKEETGIDTEFVEVLAFRRAHNA 188 (295)
T ss_pred hhheeeeeeEecC-Cc--eeEEEEecccceeecccccccceEecccc-cchhhhhhhhHHHhCcchhhhhHHHHHhhhcc
Confidence 4567777777763 44 78887654444467899999999999999 99999999999999998776665533222211
Q ss_pred CCc--eEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhccCCC
Q 023911 161 KHL--LRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENR 205 (275)
Q Consensus 161 ~~~--~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~~~~ 205 (275)
... ..-..+++.+.. ..+....+..|+.+..|+|+++..+....
T Consensus 189 ~~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~ 234 (295)
T KOG0648|consen 189 TFGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVSQPLV 234 (295)
T ss_pred hhhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhccccc
Confidence 111 111223344443 45666778889999999999988776543
No 91
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=98.17 E-value=4e-06 Score=75.07 Aligned_cols=122 Identities=23% Similarity=0.220 Sum_probs=87.7
Q ss_pred CCCeEEEEEEEE--eecCCceEEEEEEeCCCCCCCCCcEE-cCCccCCCCCCCHHHHHHHHHHHHhCCCCcc---eEEEE
Q 023911 80 RPKKAAVLICLF--EGDAGDLRVILTKRSSRMSTHSGEIS-LPGGKAEEGDRDDGDTATREAKEEIGLDPLL---VEVVT 153 (275)
Q Consensus 80 ~~r~aAVlv~L~--~~~~g~~~VLL~rRs~~l~~~~G~ws-fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~---~~~lg 153 (275)
+-+..+|.|--+ ....|.+++.+.|||.++.+|||.|. .-||.+--|. ...+||+.|..||..|+.+. +.-.|
T Consensus 128 Gv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~Nlv~~G 206 (306)
T KOG4313|consen 128 GVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVKNLVSAG 206 (306)
T ss_pred eEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHhcceecc
Confidence 445556665222 22346789999999999999999997 4789999999 99999999999999998743 33345
Q ss_pred Eecccc--cCCce-EEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 154 VLEPFL--SKHLL-RVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 154 ~l~~~~--~~~~~-~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+.+.+. +.+++ --.-||+.+.-...+.+++|..||++.--+++.+-.+.
T Consensus 207 ~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~ 258 (306)
T KOG4313|consen 207 CVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVER 258 (306)
T ss_pred eeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHH
Confidence 554442 22221 12346666655556778899999999999999877653
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.13 E-value=4.4e-06 Score=66.17 Aligned_cols=96 Identities=25% Similarity=0.245 Sum_probs=61.6
Q ss_pred cCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEE
Q 023911 94 DAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGIL 173 (275)
Q Consensus 94 ~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l 173 (275)
.+| ++||.||... +.+.|.|+||.--.+..+ + .+.+.+.+.+..|+.....+.++.+.+.+++....+++|.+.+
T Consensus 7 ~~~--~~Ll~kRp~~-gll~GLwefP~~e~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~ 81 (114)
T PF14815_consen 7 SQG--RVLLEKRPEK-GLLAGLWEFPLIESDEED-D-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEV 81 (114)
T ss_dssp TTS--EEEEEE--SS-STTTT-EE--EEE-SSS--C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEE
T ss_pred eCC--EEEEEECCCC-ChhhcCcccCEeCccCCC-C-HHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEe
Confidence 456 8999999864 689999999997777433 3 4545555667788876666678888888898888899999888
Q ss_pred cCCCCCCCCCChhhhhcceecChhhhhc
Q 023911 174 SNKKAFTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 174 ~~~~~~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
..... .+-....|++++++.+
T Consensus 82 ~~~~~-------~~~~~~~W~~~~~l~~ 102 (114)
T PF14815_consen 82 SADPP-------AEPEEGQWVSLEELDQ 102 (114)
T ss_dssp E-SS-----------TTEEEEEGGGGGG
T ss_pred cCCCC-------CCCCCcEEEEHHHHhh
Confidence 75321 1457889999999875
No 93
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=1.8e-05 Score=68.94 Aligned_cols=116 Identities=23% Similarity=0.231 Sum_probs=77.3
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEE-----cC----CccCCCCCCCHHHHHHHHHHHHhCCCCcc----
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEIS-----LP----GGKAEEGDRDDGDTATREAKEEIGLDPLL---- 148 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~ws-----fP----GG~vE~gE~s~~eaAlRE~~EEtGL~~~~---- 148 (275)
-+.|.-|.+|+. ++ ++||++||..+-++||.|. -| |+-.+........||.|-+.=|+||+...
T Consensus 51 LHRaFSVFlFns-~~--~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pe 127 (225)
T KOG0142|consen 51 LHRAFSVFLFNS-KN--ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPE 127 (225)
T ss_pred hhheeeEEEecC-cc--hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHH
Confidence 355666677874 55 7999999999888999883 23 33322222246789999999999997554
Q ss_pred -eEEEEEecccccC---CceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhcc
Q 023911 149 -VEVVTVLEPFLSK---HLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKD 202 (275)
Q Consensus 149 -~~~lg~l~~~~~~---~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~~ 202 (275)
+.+++.+.+.... .|.+=.-|+-++.. ...+++|++||+++.||..++|...
T Consensus 128 e~~~ltrihYkA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelkel 183 (225)
T KOG0142|consen 128 EFNFLTRIHYKAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKEL 183 (225)
T ss_pred HcccceeeeeecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHHH
Confidence 4566666544322 33332233323222 3456789999999999999998664
No 94
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.86 E-value=3.4e-05 Score=62.75 Aligned_cols=62 Identities=32% Similarity=0.452 Sum_probs=46.6
Q ss_pred eEEEEEEEEeecCCceEEEEEEeCCC--CCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCc
Q 023911 83 KAAVLICLFEGDAGDLRVILTKRSSR--MSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPL 147 (275)
Q Consensus 83 ~aAVlv~L~~~~~g~~~VLL~rRs~~--l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~ 147 (275)
.|+|++ +...+|.+.|||..-.-- .+..-|-|++|.|....|| ++..+|+||.-||+||.++
T Consensus 5 SAGvLl--YR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gE-dp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 5 SAGVLL--YRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGE-DPWLAARREFSEEIGICVD 68 (161)
T ss_pred cceeEE--EEecCCCEEEEEecCCCCccccCCCCcccccccccCCCc-CHHHHHHHHhhhhhceeec
Confidence 345544 454578888888864321 1223568999999999999 9999999999999999764
No 95
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00012 Score=64.81 Aligned_cols=40 Identities=35% Similarity=0.553 Sum_probs=36.6
Q ss_pred eEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhC
Q 023911 98 LRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG 143 (275)
Q Consensus 98 ~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtG 143 (275)
++++.++|.. .|+|++|||.+|+|| .+-+|..||..||.-
T Consensus 139 le~vavkr~d-----~~~WAiPGGmvdpGE-~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 139 LEFVAVKRPD-----NGEWAIPGGMVDPGE-KVSATLKREFGEEAM 178 (275)
T ss_pred eEEEEEecCC-----CCcccCCCCcCCchh-hhhHHHHHHHHHHHH
Confidence 7888899876 799999999999999 899999999999964
No 96
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.98 E-value=0.0051 Score=58.62 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+++|.||... +.+.|.|+||+. +. + ..+++..|+.|+.......++.+.+.+++....++++.+.+.....
T Consensus 243 ~~~l~~r~~~-gl~~gl~~fP~~--~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~~~~~~~~ 313 (350)
T PRK10880 243 EVWLEQRPPS-GLWGGLFCFPQF--AD-E-----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTG 313 (350)
T ss_pred EEEEEECCcc-ChhhccccCCCC--cc-h-----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEEEcccccc
Confidence 7999999854 579999999973 32 2 1245666888886433333555666667666667777655432110
Q ss_pred CCCCCChhhhhcceecChhhhhc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
..+ .....|++++++.+
T Consensus 314 ---~~~---~~~~~w~~~~~~~~ 330 (350)
T PRK10880 314 ---CMD---EGNGLWYNLAQPPS 330 (350)
T ss_pred ---ccC---CcCCeEechHHhcc
Confidence 011 12335999888765
No 97
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.17 E-value=0.055 Score=47.16 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=40.8
Q ss_pred CCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCC
Q 023911 81 PKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDP 146 (275)
Q Consensus 81 ~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~ 146 (275)
.|+..-.|+|+. ..+-++|||.+...+ .+-+|||+..+|| +..++..|.+.+-+|...
T Consensus 42 mRrsVe~Vllvh-~h~~PHvLLLq~~~~------~fkLPGg~l~~gE-~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 42 MRRSVEGVLLVH-EHGHPHVLLLQIGNT------FFKLPGGRLRPGE-DEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp SEEEEEEEEEEE-ETTEEEEEEEEETTT------EEE-SEEE--TT---HHHHHHHHHHHHHB-SS
T ss_pred CceEEEEEEEEe-cCCCcEEEEEeccCc------cccCCccEeCCCC-ChhHHHHHHHHHHcCCCc
Confidence 355555555565 467789999997643 5999999999999 899999999999999863
No 98
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.06 E-value=0.06 Score=45.83 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=59.1
Q ss_pred EEEEEEeCCCCC--CCCCcEEc-CCccCCCCCC-CHHHH-----HHHHHHHHhCCC---CcceEEEEEecccccCCc-eE
Q 023911 99 RVILTKRSSRMS--THSGEISL-PGGKAEEGDR-DDGDT-----ATREAKEEIGLD---PLLVEVVTVLEPFLSKHL-LR 165 (275)
Q Consensus 99 ~VLL~rRs~~l~--~~~G~wsf-PGG~vE~gE~-s~~ea-----AlRE~~EEtGL~---~~~~~~lg~l~~~~~~~~-~~ 165 (275)
+||+..|-...+ ..-|+.++ -|||+..+|. +..+. +-||+.||+++. ...++.+|-+..-...-+ .+
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH 152 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH 152 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence 899999976432 22356776 5999988762 22322 669999999998 455667776654332222 22
Q ss_pred EE-EEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911 166 VV-PVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 166 V~-p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
+- .|.+.+.. ..+ .....+.-++.|+.++++.+
T Consensus 153 iG~lf~~~~k~-ndv--evKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 153 IGALFLGRGKF-NDV--EVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred EEEEEEeeccc-cce--eeeecceeeeeeeeHHHHHH
Confidence 21 12222221 111 12334556788999998875
No 99
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=94.81 E-value=0.0088 Score=55.96 Aligned_cols=96 Identities=25% Similarity=0.291 Sum_probs=55.7
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceE--EEEEecccccCCceEEEEEEE-EEcC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVE--VVTVLEPFLSKHLLRVVPVIG-ILSN 175 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~--~lg~l~~~~~~~~~~V~p~v~-~l~~ 175 (275)
++||++-.. +.-|+||-|++...| +..+||+||+.||+|.+....- ..+ ++... .+-.+..|+- -+..
T Consensus 96 r~llv~g~q-----a~sw~fprgK~~kde-sd~~caiReV~eetgfD~skql~~~e~-Ie~nI--~dq~~~~fIi~gvs~ 166 (348)
T KOG2937|consen 96 RCLLVKGWQ-----ASSWSFPRGKISKDE-SDSDCAIREVTEETGFDYSKQLQDNEG-IETNI--RDQLVRLFIINGVSE 166 (348)
T ss_pred hhheeecee-----cccccccCccccccc-hhhhcchhcccchhhcCHHHHhccccC-cccch--hhceeeeeeecccee
Confidence 566665322 334999999999988 8899999999999999865421 111 01001 1111222221 0111
Q ss_pred CCCCCCCCChhhhhcceecChhhhhccCC
Q 023911 176 KKAFTPTPNPAEVEEVFDAPLEMFIKDEN 204 (275)
Q Consensus 176 ~~~~~~~~~~~EV~~v~wvpl~ell~~~~ 204 (275)
...+.++. -.|++.+.|.-++++....+
T Consensus 167 d~~f~~~v-~~eis~ihW~~l~~l~~t~~ 194 (348)
T KOG2937|consen 167 DTNFNPRV-RKEISKIHWHYLDHLVPTDK 194 (348)
T ss_pred eeecchhh-hccccceeeeehhhhccccc
Confidence 11222222 25888999999999865543
No 100
>PRK13910 DNA glycosylase MutY; Provisional
Probab=89.64 E-value=1.7 Score=40.44 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=42.8
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccccCCceEEEEEEEEEcCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFLSKHLLRVVPVIGILSNKKA 178 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~ 178 (275)
+++|.||+ .+.|.|.|+||+. + + . .+... ..++.+.+.+++....++++.+.+...
T Consensus 198 ~~ll~kr~--~~l~~gl~~fP~~--~--~-~------------~~~~~---~~~~~~~H~fTH~~~~~~~~~~~~~~~-- 253 (289)
T PRK13910 198 QIALEKIE--QKLYLGMHHFPNL--K--E-N------------LEYKL---PFLGAIKHSHTKFKLNLNLYLAAIKDL-- 253 (289)
T ss_pred EEEEEECC--CchhcccccCCCC--h--h-h------------hcccc---cccCceEEEEEeEEEEEEEEEEEeccC--
Confidence 79999995 3589999999973 2 1 1 11111 124555566666666777776654310
Q ss_pred CCCCCChhhhhcceecChhhhhc
Q 023911 179 FTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 179 ~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
. ....|++++++.+
T Consensus 254 -----~----~~~~w~~~~~~~~ 267 (289)
T PRK13910 254 -----K----NPIRFYSLKDLET 267 (289)
T ss_pred -----C----ccceEecHHHhhh
Confidence 1 2347999888754
No 101
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=89.18 E-value=1.1 Score=42.67 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCCCCCCCcCCCCeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcce
Q 023911 70 TPIIKDPERFRPKKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLV 149 (275)
Q Consensus 70 ~p~~~~~~~~~~r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~ 149 (275)
.|++......+ ++.+..+++.. +| .++|.+|... +.+.|.|+||....+.+ +.+..-+.|+..
T Consensus 224 ~P~k~~k~~~~-~~~~~~~~~~~--~~--~~~l~kr~~~-gl~~gl~~fP~~e~~~~--------~~~~~~~~~~~~--- 286 (342)
T COG1194 224 YPVKKPKKKLP-RRFAAFLILNR--DG--EVLLEKRPEK-GLLGGLWCFPQFEDEAD--------LLDWLAADGLAA--- 286 (342)
T ss_pred CCCcCcccccc-hheeeEEEEcc--Cc--chhhhhCccc-Cceecccccccccccch--------hhhHhhhccccc---
Confidence 44433333333 44444443332 44 7899888854 57899999998765441 122223344433
Q ss_pred EEEEEecccccCCceEEEEEEEEEcCCCCCCCCCChhhhhcceecChhhhhc
Q 023911 150 EVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIK 201 (275)
Q Consensus 150 ~~lg~l~~~~~~~~~~V~p~v~~l~~~~~~~~~~~~~EV~~v~wvpl~ell~ 201 (275)
+.++.+.+.+++....+. +.+.... . .. ...|++++++..
T Consensus 287 ~~~~~~~H~fth~~l~i~-~~a~~~~--------~-~~--~~~w~~~~~~~~ 326 (342)
T COG1194 287 EPLGAFRHTFTHFRLTIE-LRASASL--------V-LS--DGRWYNLSDLES 326 (342)
T ss_pred ccccceeeeeeEEEEEEE-EEeeccc--------C-CC--Cceecccccccc
Confidence 445666666666555555 3332211 1 11 678988887653
No 102
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=88.20 E-value=1 Score=42.01 Aligned_cols=85 Identities=19% Similarity=0.076 Sum_probs=52.4
Q ss_pred EcCCccCCCCCCCHHHHHHHHHHHHhCCCCc--ceEEEEEecccccCCceEEEEEEEEEcCCCC---CCCCCChhhhhcc
Q 023911 117 SLPGGKAEEGDRDDGDTATREAKEEIGLDPL--LVEVVTVLEPFLSKHLLRVVPVIGILSNKKA---FTPTPNPAEVEEV 191 (275)
Q Consensus 117 sfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~--~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~---~~~~~~~~EV~~v 191 (275)
++-.|.++..= |..+-|.||..||+|++.. .++.+..+-+-...++-.-+-|.+.+.+... .--.-+++|..++
T Consensus 287 ELcag~Vd~p~-s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv 365 (405)
T KOG4432|consen 287 ELCAGRVDDPF-SDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV 365 (405)
T ss_pred eeecccCCCCc-ccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence 34467777754 7789999999999998654 4444444433333444333444444443221 1112356788999
Q ss_pred eecChhhhhcc
Q 023911 192 FDAPLEMFIKD 202 (275)
Q Consensus 192 ~wvpl~ell~~ 202 (275)
..++++++...
T Consensus 366 v~lsle~a~~~ 376 (405)
T KOG4432|consen 366 VRLSLEDAPSL 376 (405)
T ss_pred EEechhhhhHH
Confidence 99999987653
No 103
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=87.68 E-value=1.7 Score=37.34 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=39.1
Q ss_pred CeEEEEEEEEeecCCceEEEEEEeCCCCCCCCCcEEcCCccCCCCCCCHHHHHHHHHHHHhC
Q 023911 82 KKAAVLICLFEGDAGDLRVILTKRSSRMSTHSGEISLPGGKAEEGDRDDGDTATREAKEEIG 143 (275)
Q Consensus 82 r~aAVlv~L~~~~~g~~~VLL~rRs~~l~~~~G~wsfPGG~vE~gE~s~~eaAlRE~~EEtG 143 (275)
|+..-.|+|+. +..-++|||.+=..+ ..-+|||..++|| +-.+...|-+-|-+|
T Consensus 69 Rrsvegvlivh-eH~lPHvLLLQig~t------f~KLPGG~L~pGE-~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 69 RRSVEGVLIVH-EHNLPHVLLLQIGNT------FFKLPGGRLRPGE-DEADGLKRLLTESLG 122 (221)
T ss_pred hheeeeeEEEe-ecCCCeEEEEeeCCE------EEecCCCccCCCc-chhHHHHHHHHHHhc
Confidence 44444444444 344468888764432 3679999999999 889999999999999
No 104
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=87.06 E-value=3 Score=38.54 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.5
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCc
Q 023911 99 RVILTKRSSRMSTHSGEISLPGG 121 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG 121 (275)
++|+.+|... +.+.|.|+||+.
T Consensus 240 ~~~~~~r~~~-~~~~gl~~~p~~ 261 (275)
T TIGR01084 240 EVLLEQRPEK-GLWGGLYCFPQF 261 (275)
T ss_pred eEEEEeCCCC-chhhccccCCCC
Confidence 7999999754 578999999973
No 105
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=84.19 E-value=1.9 Score=40.30 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=40.4
Q ss_pred EEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEEEecccc--cCCceEEEEEEEEEcC
Q 023911 116 ISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVTVLEPFL--SKHLLRVVPVIGILSN 175 (275)
Q Consensus 116 wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg~l~~~~--~~~~~~V~p~v~~l~~ 175 (275)
+++-||.+|.. .++.+.|..|+.||.|..++.-.++..+.... ..++...+.|.|.+.+
T Consensus 81 ielc~g~idke-~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e 141 (405)
T KOG4432|consen 81 IELCAGLIDKE-LSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE 141 (405)
T ss_pred eeeeccccccc-cCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence 35679999986 49999999999999999766554444443332 2233445666666654
No 106
>PF14443 DBC1: DBC1
Probab=81.60 E-value=1.7 Score=35.53 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=33.8
Q ss_pred EEEEEEeCCCCCCCCCcEE--cCCccCCCCCCCHHHHHHHHHHHHhCCCCcce
Q 023911 99 RVILTKRSSRMSTHSGEIS--LPGGKAEEGDRDDGDTATREAKEEIGLDPLLV 149 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~ws--fPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~ 149 (275)
++|+.+|....---.|.|+ +=||-.+.+...+..||+|=++|-|||+.+.-
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~C 61 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNC 61 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhc
Confidence 4455554432222356665 34666666565789999999999999997753
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=59.22 E-value=8.9 Score=25.09 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=11.8
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHh
Q 023911 119 PGGKAEEGDRDDGDTATREAKEEI 142 (275)
Q Consensus 119 PGG~vE~gE~s~~eaAlRE~~EEt 142 (275)
-||-..+|- -+..+|+||+-||+
T Consensus 14 lggLasPgP-vp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGP-VPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred hcccCCCCC-CCchHHHHHHHHHH
Confidence 477788887 78889999999996
No 108
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=56.51 E-value=3.4 Score=29.19 Aligned_cols=39 Identities=26% Similarity=0.148 Sum_probs=29.4
Q ss_pred hhHHHHHHHhccccCCCCCCchhHHHHHHhhhccccccc
Q 023911 25 TQRLVALAQQLRLYKPPPPFDEMEEQQIQETAGKVVSQV 63 (275)
Q Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (275)
-++|++++|.+..|...+|+-+++++..+.+...+....
T Consensus 8 a~~lqaiAqtGL~Yskd~yD~ERy~~lr~ia~ella~~s 46 (58)
T PF12535_consen 8 AKRLQAIAQTGLAYSKDPYDRERYEELREIAAELLAEYS 46 (58)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCHT
T ss_pred HHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999988887776654443
No 109
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=46.55 E-value=36 Score=31.13 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=34.2
Q ss_pred EEEEEEeCCCCCCCCCcEEcCCccC-CCCCCCHHHHHHHHHHHHhCCCC
Q 023911 99 RVILTKRSSRMSTHSGEISLPGGKA-EEGDRDDGDTATREAKEEIGLDP 146 (275)
Q Consensus 99 ~VLL~rRs~~l~~~~G~wsfPGG~v-E~gE~s~~eaAlRE~~EEtGL~~ 146 (275)
-+||++|.-.. .+.|-||-+.. +.++ ++..+|.|++.+-.|=..
T Consensus 140 LyLLV~~k~g~---~s~w~fP~~~~s~~~~-~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 140 LYLLVKRKFGK---SSVWIFPNRQFSSSEK-TLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEEeeccCc---cceeeCCCcccCCccc-hHHHHHHHHHHHHhcchh
Confidence 36666655333 55899999999 7777 999999999999888543
No 110
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.66 E-value=49 Score=23.47 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=15.9
Q ss_pred EEcCCccCCCCCCCHHHHHHHHHHH
Q 023911 116 ISLPGGKAEEGDRDDGDTATREAKE 140 (275)
Q Consensus 116 wsfPGG~vE~gE~s~~eaAlRE~~E 140 (275)
|-+|||++-.. + -.|.|+++|
T Consensus 24 Wl~Pgg~vi~N---P-lkAqR~AE~ 44 (60)
T PF07026_consen 24 WLMPGGKVITN---P-LKAQRLAEE 44 (60)
T ss_pred eecCCCeeEcC---H-HHHHHHHHH
Confidence 99999999853 3 357888755
No 111
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=23.81 E-value=69 Score=36.07 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=24.6
Q ss_pred EEcCCccCCCCCCCHHHHHHHHHHHHhCCCCcceEEEE
Q 023911 116 ISLPGGKAEEGDRDDGDTATREAKEEIGLDPLLVEVVT 153 (275)
Q Consensus 116 wsfPGG~vE~gE~s~~eaAlRE~~EEtGL~~~~~~~lg 153 (275)
+.||-|. ..+..+||+++|+||+++.+..+.
T Consensus 270 vTfP~G~-------~Q~qLi~e~Yse~Gl~P~sv~YvE 300 (2376)
T KOG1202|consen 270 VTFPSGD-------MQEQLIRETYSEAGLNPESVVYVE 300 (2376)
T ss_pred ccCCCcH-------HHHHHHHHHHHhcCCCcccEEEEE
Confidence 6677654 467799999999999999877653
Done!