BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023912
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 183 bits (464), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 153/264 (57%), Gaps = 23/264 (8%)
Query: 7 RAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGI 66
RA +L+ +M +AGL + D GN+ GR EG N A +L+GSHLD+V + G FDG LG+
Sbjct: 36 RAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGV 95
Query: 67 ITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDK 126
+ + ++ + G + P+EV+AF+DEEG RF+ +GS A+AG LP AL D
Sbjct: 96 LAGVEVVQTMNEHGVV--THHPIEVVAFTDEEGARFRFGMIGSRAMAGTLPPEALECRDA 153
Query: 127 SGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAG 186
G+++ +A+++ +D + L Q P +V Y+E+HIEQG VLE G P+G+V GIAG
Sbjct: 154 EGISLAEAMKQAGLD--PDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211
Query: 187 QTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXX 246
+K T+ G HAG PMS+R+DPM AAA++I+++E +
Sbjct: 212 LIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----------------- 254
Query: 247 XXXXXXVCTVGEISSWPSASNVIP 270
V TVG++ +P NVIP
Sbjct: 255 --TGTTVGTVGQLHVYPGGINVIP 276
>pdb|1Z2L|A Chain A, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
pdb|1Z2L|B Chain B, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
Length = 423
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 132/272 (48%), Gaps = 25/272 (9%)
Query: 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFD 61
SP + ++ M +GL T D +GN++GR+ G + +L GSH+DTVV+ G D
Sbjct: 35 SPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLD 94
Query: 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSA 120
G G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 95 GQFGALAAWLAIDWLKT--QYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDV 152
Query: 121 LRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGV 180
+ D G + +DA++ + L + + ++E+HIEQG VLE G +GV
Sbjct: 153 RNICDAKGNSFVDAMKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIGV 208
Query: 181 VQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRX 240
V I GQ R VT+ G HAGT PM R+D + A R+C + G
Sbjct: 209 VNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYA-------FSRICHQSVEKAKRMG-- 259
Query: 241 XXXXXXXXXXXXVCTVGEISSWPSASNVIPGE 272
V T G++ P+ NV+PG+
Sbjct: 260 ---------DPLVLTFGKVEPRPNTVNVVPGK 282
>pdb|2IMO|A Chain A, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
pdb|2IMO|B Chain B, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
Length = 423
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIF 60
SP + ++ +GL T D +GN++GR+ G + +L GSH+DTVV+ G
Sbjct: 34 YSPEWLETQQQFKKRXAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNL 93
Query: 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVS 119
DG G + A A+ LK+ + G R VEV+A ++EEG RF F GS + G+ P
Sbjct: 94 DGQFGALAAWLAIDWLKT--QYGAPLRTVEVVAXAEEEGSRFPYVFWGSKNIFGLANPDD 151
Query: 120 ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLG 179
+ D G + +DA + + L + + ++E+HIEQG VLE G +G
Sbjct: 152 VRNICDAKGNSFVDAXKACGFTLPNAPLTPRQ----DIKAFVELHIEQGCVLESNGQSIG 207
Query: 180 VVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239
VV I GQ R VT+ G HAGT P R+D + A R+C + G
Sbjct: 208 VVNAIVGQRRYTVTLNGESNHAGTTPXGYRRDTVYA-------FSRICHQSVEKAKRXG- 259
Query: 240 XXXXXXXXXXXXXVCTVGEISSWPSASNVIPGE 272
V T G++ P+ NV+PG+
Sbjct: 260 ----------DPLVLTFGKVEPRPNTVNVVPGK 282
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEI 273
T G I + P + N+IPGE+
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEV 314
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEI 273
T G I + P + N+IPGE+
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEV 314
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + +EEG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEI 273
T G I + P + N+IPGE+
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEV 314
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 35/270 (12%)
Query: 12 IRQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGII 67
+R W E G + VD +GN+ G N + GSHLDT +AG +DG LG++
Sbjct: 72 MRDWFTNECESLGCKVKVDKIGNMFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVL 130
Query: 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRV 123
+ L+ K + V V+ + + EG RF + GS+ + L + + V
Sbjct: 131 AGLEVLRTFKDNNYVPNYD--VCVVVWFNAEGARFARSCTGSSVWSHDLSLEEAYGLMSV 188
Query: 124 SDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQG 183
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G
Sbjct: 189 GEDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTG 244
Query: 184 IAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXX 243
+ KVTV G HAGT P +R+D + ++++IV + +
Sbjct: 245 VQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRHNGLF--------- 295
Query: 244 XXXXXXXXXVCTVGEISSWPSASNVIPGEI 273
T G I + P + N+IPGE+
Sbjct: 296 -----------TCGIIDAKPYSVNIIPGEV 314
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 116/269 (43%), Gaps = 35/269 (13%)
Query: 13 RQWM----EDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIIT 68
R W E G + VD +GN G N + GSHLDT +AG +DG LG++
Sbjct: 74 RDWFTNECESLGCKVKVDKIGNXFAVYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVLA 132
Query: 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA----LRVS 124
+ L+ K + V V+ + +EEG RF + GS+ + L + V
Sbjct: 133 GLEVLRTFKDNNYVPNYD--VCVVVWFNEEGARFARSCTGSSVWSHDLSLEEAYGLXSVG 190
Query: 125 DKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGI 184
+ +V D+L+ +I Y + + E+HIEQGP+LE +G+V G+
Sbjct: 191 EDKPESVYDSLK----NIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTGV 246
Query: 185 AGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXX 244
KVTV G HAGT P +R+D + +++ IV + +
Sbjct: 247 QAYNWQKVTVHGVGAHAGTTPWRLRKDALLXSSKXIVAASEIAQRHNGLF---------- 296
Query: 245 XXXXXXXXVCTVGEISSWPSASNVIPGEI 273
T G I + P + N+IPGE+
Sbjct: 297 ----------TCGIIDAKPYSVNIIPGEV 315
>pdb|3F6K|A Chain A, Crystal Structure Of The Vps10p Domain Of Human
SortilinNTS3 IN Complex With Neurotensin
Length = 685
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 41 SAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGV 100
S +L G H T++D+G GII AI RP+ VI FS +EG
Sbjct: 437 SWTKMLEGPHYYTILDSG------GIIVAIE------------HSSRPINVIKFSTDEGQ 478
Query: 101 RFQS 104
+Q+
Sbjct: 479 CWQT 482
>pdb|3SQG|B Chain B, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|E Chain E, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|H Chain H, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 433
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 3 PASVRAGNLIRQWMEDAGLRTWVDH-----LGNV---HGRVEGLNASAQALLIGSHLDTV 54
P + A + ++ M+ AGL ++ +GN H R L+ + + L + L ++
Sbjct: 191 PVNHLAATVRKRAMQGAGLTMILEEAAQFEMGNCMGPHERGHLLDLAYEGLNANNLLYSL 250
Query: 55 VDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 114
+ DGSLG + +A++ K+ G + LK+ D + ++ + + +A LAG
Sbjct: 251 IKDNGQDGSLGDVI-YAAVEKAKADGVIKSLKKMPSGFTVYDADDMQLWNAYACTAMLAG 309
Query: 115 I 115
+
Sbjct: 310 V 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,723,148
Number of Sequences: 62578
Number of extensions: 295429
Number of successful extensions: 675
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 24
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)