Query 023912
Match_columns 275
No_of_seqs 226 out of 1531
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03176 AllC allantoate amid 100.0 1.3E-52 2.9E-57 395.3 28.1 249 1-274 28-277 (406)
2 PRK13799 unknown domain/N-carb 100.0 1.3E-50 2.9E-55 397.0 27.4 253 1-274 209-462 (591)
3 PRK13590 putative bifunctional 100.0 5.9E-50 1.3E-54 392.7 28.3 251 1-274 209-460 (591)
4 PRK12891 allantoate amidohydro 100.0 2.1E-47 4.6E-52 360.8 27.2 248 1-274 35-283 (414)
5 TIGR01879 hydantase amidase, h 100.0 6.5E-47 1.4E-51 356.0 28.3 250 1-274 26-276 (401)
6 PRK12892 allantoate amidohydro 100.0 3.9E-43 8.6E-48 331.0 28.4 249 1-274 34-284 (412)
7 PRK12890 allantoate amidohydro 100.0 7.2E-42 1.6E-46 322.9 28.4 250 1-274 33-285 (414)
8 PRK12893 allantoate amidohydro 100.0 3.9E-40 8.5E-45 310.7 27.2 248 1-274 35-283 (412)
9 PRK09290 allantoate amidohydro 100.0 2.7E-39 5.8E-44 305.4 28.3 252 1-274 32-284 (413)
10 PLN02693 IAA-amino acid hydrol 100.0 7.6E-32 1.7E-36 256.3 23.5 208 1-274 62-285 (437)
11 PRK07473 carboxypeptidase; Pro 100.0 3.3E-31 7.2E-36 247.5 21.3 194 6-274 34-250 (376)
12 COG1473 AbgB Metal-dependent a 100.0 1.4E-30 2.9E-35 242.6 21.2 207 1-274 27-253 (392)
13 PRK06915 acetylornithine deace 100.0 3.1E-30 6.6E-35 244.1 21.7 209 1-274 32-283 (422)
14 PLN02280 IAA-amino acid hydrol 100.0 9.8E-30 2.1E-34 243.9 23.3 208 1-274 112-335 (478)
15 PRK08588 succinyl-diaminopimel 100.0 1.3E-29 2.9E-34 236.2 23.2 203 1-274 17-245 (377)
16 PRK13009 succinyl-diaminopimel 100.0 1E-29 2.3E-34 236.5 22.4 210 1-274 17-251 (375)
17 PRK07338 hypothetical protein; 100.0 1.4E-29 3.1E-34 238.0 21.6 195 5-274 39-269 (402)
18 TIGR01883 PepT-like peptidase 100.0 1E-29 2.2E-34 235.5 19.6 197 1-274 15-237 (361)
19 PRK06837 acetylornithine deace 100.0 1.7E-29 3.7E-34 239.6 21.0 211 1-274 35-288 (427)
20 TIGR01246 dapE_proteo succinyl 100.0 3.7E-29 7.9E-34 232.7 22.7 210 1-274 14-248 (370)
21 PRK06133 glutamate carboxypept 100.0 6.5E-29 1.4E-33 234.5 23.2 195 5-274 59-276 (410)
22 TIGR01910 DapE-ArgE acetylorni 100.0 3E-29 6.5E-34 233.8 19.1 208 2-274 17-254 (375)
23 PRK13004 peptidase; Reviewed 100.0 9.4E-29 2E-33 232.5 21.1 203 1-274 30-255 (399)
24 TIGR01893 aa-his-dipept aminoa 100.0 7.1E-29 1.5E-33 238.5 20.1 206 2-274 20-257 (477)
25 PRK07522 acetylornithine deace 100.0 6.7E-29 1.4E-33 231.9 19.3 207 2-274 20-254 (385)
26 PRK07906 hypothetical protein; 100.0 1.1E-28 2.3E-33 233.9 20.8 228 3-274 22-298 (426)
27 TIGR03320 ygeY M20/DapE family 100.0 1.5E-28 3.3E-33 230.7 20.9 202 2-274 29-253 (395)
28 PRK13013 succinyl-diaminopimel 100.0 1.3E-28 2.9E-33 233.1 20.2 213 4-274 35-290 (427)
29 TIGR03526 selenium_YgeY putati 100.0 2.8E-28 6E-33 229.0 21.0 203 1-274 28-253 (395)
30 PRK00466 acetyl-lysine deacety 100.0 1.8E-28 3.9E-33 226.4 19.3 185 2-274 26-223 (346)
31 TIGR01892 AcOrn-deacetyl acety 100.0 4E-28 8.7E-33 224.7 20.4 201 4-274 16-244 (364)
32 TIGR01900 dapE-gram_pos succin 100.0 4.1E-28 8.9E-33 226.5 19.1 205 2-274 12-253 (373)
33 PRK09133 hypothetical protein; 100.0 1.7E-27 3.7E-32 228.6 22.1 223 3-274 56-340 (472)
34 PRK05111 acetylornithine deace 100.0 8.2E-28 1.8E-32 224.5 19.2 199 5-274 31-257 (383)
35 TIGR01891 amidohydrolases amid 100.0 5.1E-27 1.1E-31 218.0 22.2 208 1-274 14-239 (363)
36 PRK08652 acetylornithine deace 100.0 3.3E-27 7.1E-32 217.3 19.7 191 1-274 17-223 (347)
37 PRK13381 peptidase T; Provisio 100.0 6E-27 1.3E-31 220.6 21.9 194 3-274 28-273 (404)
38 PRK13007 succinyl-diaminopimel 100.0 1E-26 2.2E-31 214.7 21.0 202 1-274 22-239 (352)
39 PRK08737 acetylornithine deace 100.0 4.6E-27 9.9E-32 218.8 18.4 189 4-274 28-241 (364)
40 PRK08596 acetylornithine deace 100.0 9.1E-27 2E-31 220.6 20.7 204 3-274 33-274 (421)
41 PRK04443 acetyl-lysine deacety 100.0 7.6E-27 1.6E-31 215.8 19.6 194 2-274 22-228 (348)
42 PRK13983 diaminopimelate amino 99.9 2E-26 4.2E-31 216.0 21.5 210 4-274 28-272 (400)
43 TIGR01880 Ac-peptdase-euk N-ac 99.9 3E-26 6.5E-31 215.4 22.4 214 4-274 29-269 (400)
44 PRK05469 peptidase T; Provisio 99.9 8.9E-26 1.9E-30 212.9 21.4 193 4-274 30-275 (408)
45 COG0624 ArgE Acetylornithine d 99.9 7.1E-26 1.5E-30 213.5 19.6 208 3-274 31-278 (409)
46 PRK08201 hypothetical protein; 99.9 6.4E-26 1.4E-30 216.8 19.3 175 3-226 37-239 (456)
47 PRK15026 aminoacyl-histidine d 99.9 7.4E-26 1.6E-30 217.6 19.1 202 2-274 26-263 (485)
48 TIGR01902 dapE-lys-deAc N-acet 99.9 1.4E-25 3.1E-30 206.2 19.4 189 2-274 13-214 (336)
49 PRK08651 succinyl-diaminopimel 99.9 9.5E-26 2.1E-30 211.3 18.4 202 3-274 26-262 (394)
50 PRK08262 hypothetical protein; 99.9 3.1E-25 6.7E-30 213.7 22.4 224 7-274 74-353 (486)
51 TIGR01882 peptidase-T peptidas 99.9 7.3E-26 1.6E-30 213.8 17.4 194 2-274 30-277 (410)
52 PRK06446 hypothetical protein; 99.9 1.9E-25 4.1E-30 212.5 19.3 169 6-226 25-220 (436)
53 PRK09104 hypothetical protein; 99.9 4.7E-25 1E-29 211.3 20.6 174 5-226 42-247 (464)
54 PRK07907 hypothetical protein; 99.9 6.1E-25 1.3E-29 209.7 21.2 168 4-226 42-240 (449)
55 KOG2275 Aminoacylase ACY1 and 99.9 2.7E-24 5.8E-29 196.6 18.6 212 7-274 49-286 (420)
56 PRK07079 hypothetical protein; 99.9 2.1E-23 4.6E-28 200.1 19.6 173 4-225 38-246 (469)
57 PRK07318 dipeptidase PepV; Rev 99.9 1.1E-22 2.4E-27 195.1 18.7 102 4-115 44-165 (466)
58 PRK07205 hypothetical protein; 99.9 3.5E-22 7.5E-27 190.5 20.2 99 6-114 41-162 (444)
59 TIGR01887 dipeptidaselike dipe 99.9 6.3E-22 1.4E-26 188.9 20.3 186 4-224 32-277 (447)
60 TIGR01886 dipeptidase dipeptid 99.9 6.4E-22 1.4E-26 189.8 19.5 102 3-114 42-163 (466)
61 PRK06156 hypothetical protein; 99.8 1.1E-18 2.4E-23 169.6 20.2 99 6-115 75-201 (520)
62 PRK08554 peptidase; Reviewed 99.8 1.8E-17 3.9E-22 158.0 16.4 88 5-99 26-137 (438)
63 PRK10199 alkaline phosphatase 99.7 8.8E-16 1.9E-20 140.6 12.3 104 2-116 51-189 (346)
64 COG4187 RocB Arginine degradat 99.5 8.2E-13 1.8E-17 121.9 13.8 181 2-225 26-262 (553)
65 PF07687 M20_dimer: Peptidase 99.3 1.4E-11 3.1E-16 94.9 7.3 80 182-274 1-80 (111)
66 TIGR03106 trio_M42_hydro hydro 99.3 5.3E-11 1.1E-15 110.0 11.9 96 1-99 18-219 (343)
67 TIGR03107 glu_aminopep glutamy 99.2 1.7E-10 3.7E-15 106.8 10.7 111 1-120 13-228 (350)
68 PRK09961 exoaminopeptidase; Pr 99.2 1.9E-10 4.2E-15 106.4 10.9 109 1-120 15-216 (344)
69 KOG2276 Metalloexopeptidases [ 99.1 4.1E-10 8.9E-15 103.4 11.8 174 4-225 40-252 (473)
70 COG1363 FrvX Cellulase M and r 99.1 3.6E-10 7.8E-15 104.1 10.5 110 1-120 17-230 (355)
71 COG2195 PepD Di- and tripeptid 99.1 1.6E-10 3.4E-15 108.6 6.2 194 2-273 21-281 (414)
72 PF01546 Peptidase_M20: Peptid 99.0 8.6E-10 1.9E-14 92.4 6.9 62 46-114 1-83 (189)
73 PRK09864 putative peptidase; P 99.0 3.1E-09 6.6E-14 98.5 10.4 106 1-120 15-223 (356)
74 PF04389 Peptidase_M28: Peptid 98.9 1E-09 2.2E-14 91.9 5.4 64 44-114 2-72 (179)
75 KOG2194 Aminopeptidases of the 98.8 2.5E-08 5.4E-13 99.6 9.0 107 4-117 79-212 (834)
76 COG2234 Iap Predicted aminopep 98.2 3.5E-06 7.7E-11 80.2 7.8 67 42-117 208-275 (435)
77 KOG2195 Transferrin receptor a 98.2 4.9E-06 1.1E-10 83.1 8.5 81 27-115 337-420 (702)
78 PF05343 Peptidase_M42: M42 gl 98.0 7.8E-06 1.7E-10 74.1 5.1 51 60-119 133-183 (292)
79 KOG3946 Glutaminyl cyclase [Po 97.9 4.5E-05 9.8E-10 67.6 8.0 112 2-115 68-200 (338)
80 COG4882 Predicted aminopeptida 97.0 0.0027 5.9E-08 58.4 7.8 79 29-117 179-261 (486)
81 PF05450 Nicastrin: Nicastrin; 96.9 0.0032 6.9E-08 55.4 7.2 69 43-116 1-75 (234)
82 KOG2526 Predicted aminopeptida 94.7 0.14 3E-06 48.4 8.0 81 29-114 194-287 (555)
83 PF09940 DUF2172: Domain of un 84.9 2.3 4.9E-05 39.8 5.9 64 34-114 123-186 (386)
84 KOG3566 Glycosylphosphatidylin 78.1 11 0.00024 37.2 8.1 91 10-115 92-193 (617)
85 PF04114 Gaa1: Gaa1-like, GPI 73.8 10 0.00022 37.1 6.9 74 29-116 4-78 (504)
86 cd00433 Peptidase_M17 Cytosol 73.0 47 0.001 32.3 11.1 94 7-113 175-303 (468)
87 PRK00913 multifunctional amino 64.1 65 0.0014 31.5 9.9 94 7-113 192-317 (483)
88 PF00883 Peptidase_M17: Cytoso 57.7 77 0.0017 29.1 8.7 87 7-98 19-140 (311)
89 COG1362 LAP4 Aspartyl aminopep 56.0 34 0.00075 32.7 6.3 53 2-54 20-90 (437)
90 PRK02256 putative aminopeptida 54.8 20 0.00044 34.7 4.8 47 46-99 246-292 (462)
91 PTZ00412 leucyl aminopeptidase 54.1 1.6E+02 0.0035 29.4 10.7 85 8-98 234-354 (569)
92 KOG2657 Transmembrane glycopro 51.8 45 0.00098 32.7 6.4 81 29-114 158-249 (596)
93 PRK02813 putative aminopeptida 47.4 57 0.0012 31.3 6.5 54 2-55 18-89 (428)
94 PTZ00371 aspartyl aminopeptida 46.1 61 0.0013 31.5 6.6 54 2-55 19-91 (465)
95 KOG2597 Predicted aminopeptida 42.0 1.9E+02 0.0041 28.5 9.1 87 7-99 210-331 (513)
96 PRK02256 putative aminopeptida 40.1 78 0.0017 30.7 6.3 54 2-55 38-106 (462)
97 PRK06778 hypothetical protein; 37.6 63 0.0014 29.3 4.9 39 43-81 183-223 (289)
98 COG1360 MotB Flagellar motor p 35.7 1.4E+02 0.003 26.3 6.7 53 44-98 165-219 (244)
99 PF02127 Peptidase_M18: Aminop 35.5 42 0.00092 32.3 3.6 54 2-55 5-76 (432)
100 PF03738 GSP_synth: Glutathion 34.7 84 0.0018 23.2 4.5 31 2-32 10-40 (97)
101 PRK06667 motB flagellar motor 30.0 1.8E+02 0.0038 25.6 6.4 54 43-98 160-217 (252)
102 TIGR03350 type_VI_ompA type VI 28.4 1.6E+02 0.0034 23.1 5.4 53 43-98 61-116 (137)
103 smart00853 MutL_C MutL C termi 28.2 1.3E+02 0.0027 23.3 4.7 26 1-26 61-86 (136)
104 COG4310 Uncharacterized protei 26.9 2E+02 0.0044 26.7 6.2 83 15-114 147-235 (435)
105 PF08676 MutL_C: MutL C termin 25.7 1.6E+02 0.0035 23.0 5.0 25 1-25 60-84 (144)
106 PRK12799 motB flagellar motor 24.7 2.1E+02 0.0046 27.5 6.2 53 44-98 188-244 (421)
107 PRK09039 hypothetical protein; 24.6 1.5E+02 0.0033 27.5 5.2 52 44-98 264-319 (343)
108 COG2195 PepD Di- and tripeptid 24.4 56 0.0012 31.3 2.3 15 43-57 62-76 (414)
109 PTZ00371 aspartyl aminopeptida 22.9 1.1E+02 0.0025 29.6 4.2 53 57-116 247-300 (465)
110 PRK09041 motB flagellar motor 22.5 1.9E+02 0.0041 26.6 5.3 54 43-98 192-249 (317)
111 PRK09040 hypothetical protein; 20.9 2.4E+02 0.0052 24.2 5.4 52 44-98 124-180 (214)
112 PRK02813 putative aminopeptida 20.5 1.1E+02 0.0024 29.3 3.6 36 57-99 230-265 (428)
113 PF07577 DUF1547: Domain of Un 20.3 22 0.00048 24.1 -0.9 11 47-57 6-16 (58)
114 PF13676 TIR_2: TIR domain; PD 20.1 35 0.00075 25.0 0.0 25 2-26 6-30 (102)
No 1
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=100.00 E-value=1.3e-52 Score=395.31 Aligned_cols=249 Identities=35% Similarity=0.559 Sum_probs=225.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
||.+|.++++||.+||+++|++++.|..+|+|++++|++++.|+|+++|||||||.+|.+|+++||+++|++++.|++++
T Consensus 28 ~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~~~ 107 (406)
T TIGR03176 28 YSPEWLAAQQQFKKRMAESGLETRFDDVGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKEKY 107 (406)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999998777799999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccc-cccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
. +++++|.+++|.+||++||+.+|+||+.+.+.+..+ .+...|.+|+++.++|++.|+.++. +.+ ...++++
T Consensus 108 ~--~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~--~~~---~~~~~~~ 180 (406)
T TIGR03176 108 G--APLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRK--APT---VRDDIKA 180 (406)
T ss_pred C--CCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccc--ccc---cccccce
Confidence 8 999999999999999999999999999999876543 4667899999999999999996542 111 1236899
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
|+|+|||||++||..+..+|+|++++|..||+|+|+|+++|+|++|+.+|+||+.+|+++|.+|+++..+.
T Consensus 181 ~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~~--------- 251 (406)
T TIGR03176 181 FVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKEI--------- 251 (406)
T ss_pred EEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999987787667999999999999999875431
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
..++++|||+|+++|++.||||++|+
T Consensus 252 ---------~~~~~~tvG~I~~gg~~~NvIP~~a~ 277 (406)
T TIGR03176 252 ---------GDPLVLTFGKVEPVPNTVNVVPGETT 277 (406)
T ss_pred ---------CCCcEEEEEEEEEcCCceEEECCeEE
Confidence 24579999999975789999999996
No 2
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=397.04 Aligned_cols=253 Identities=42% Similarity=0.679 Sum_probs=226.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCe-EEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHc
Q 023912 1 MSPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKST 79 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~-v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~ 79 (275)
||.++.++++||.+||+++|++ +++|.++||+++++|++++.|+|+++|||||||.+|.+|+.+||+++|++++.|++.
T Consensus 209 ~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~~ 288 (591)
T PRK13799 209 LSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHEQ 288 (591)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHHc
Confidence 6899999999999999999998 999999999999999766679999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 80 GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 80 ~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
++ +++++|.|++|++||+.||+.+|+||+.+.+.+..+.+...|.+|+++.++|++.|+.+.. +.+....++++++
T Consensus 289 ~~--~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~--~~~~~~~~~~~~a 364 (591)
T PRK13799 289 GE--RLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDA--IPKIARDPADVLG 364 (591)
T ss_pred CC--CCCCCeEEEEecCCCccCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhh--ccccccCCCCccE
Confidence 99 9999999999999999999999999999999766666677899999999999999986431 2221222357899
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
|+|+||||||+||..+.++|+|++++|..||+|+|+|+++|+|++|+..|+||+.+|+++|.+++++..+.
T Consensus 365 ~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--------- 435 (591)
T PRK13799 365 FIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--------- 435 (591)
T ss_pred EEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999988898767999999999999999976531
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+. ...++|||+|++++++.|+||++|+
T Consensus 436 -------~~-~~~v~tVG~I~~~~ga~NvIP~~a~ 462 (591)
T PRK13799 436 -------QH-ASLVATMGQLNVPSGSTNVIPGRCQ 462 (591)
T ss_pred -------CC-CCcEEEEEEEEecCCCCceECCEEE
Confidence 11 3468999999985568999999996
No 3
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=5.9e-50 Score=392.68 Aligned_cols=251 Identities=38% Similarity=0.642 Sum_probs=225.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCC-eEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHc
Q 023912 1 MSPASVRAGNLIRQWMEDAGL-RTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKST 79 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~-~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~ 79 (275)
||.++.++++||.+||+++|+ ++++|.+||+|++++|++++.|+|+++|||||||.+|.+||++||+++|++++.|++.
T Consensus 209 ~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~~ 288 (591)
T PRK13590 209 LTDAHRACAQQISHWMRDCGFDEVHIDAVGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHRQ 288 (591)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeeECCCCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHHc
Confidence 689999999999999999999 9999999999999998766569999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 80 GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 80 ~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
++ .++++|.|++|++||++||+.+|+||+.+.+.+..+.+...|.+|+++.++|++.|+.++ .+.+....+.++.+
T Consensus 289 ~~--~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~--~~~~~~~~~~~~~a 364 (591)
T PRK13590 289 GR--RLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCID--DIPKLRRDPARYLG 364 (591)
T ss_pred CC--CCCCCeEEEEecCCccccCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChh--hccccccCCCCccE
Confidence 98 888999999999999999999999999999866656666788999999999999999643 34444444567999
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
|+|+|||||++||..+..+++|++++|..||+|+|+|+++|+|++|+..|.||+.+|++++..++++...
T Consensus 365 ~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~---------- 434 (591)
T PRK13590 365 FVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ---------- 434 (591)
T ss_pred EEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999999999999999889876799999999999999986542
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
. ..+++|||.|+++|+++||||++|+
T Consensus 435 --------~-~~~v~tVG~i~~~Gg~~NVIP~~a~ 460 (591)
T PRK13590 435 --------D-GDSVGTVGMLEVPGGSINVVPGRCR 460 (591)
T ss_pred --------C-CCcEEEEEEEEECCCCCceECCEEE
Confidence 1 3458899999964579999999996
No 4
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2.1e-47 Score=360.75 Aligned_cols=248 Identities=33% Similarity=0.578 Sum_probs=221.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
||++|.++++||.++|+++|++++.+..+|++++++|.+++.|+|+|+|||||||++|.+|||+|++++|+|++.|++.+
T Consensus 35 ~~~~e~~~~~~l~~~l~~~G~~v~~~~~gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~~~ 114 (414)
T PRK12891 35 LTDGDREARDLFVAWARDAGCTVRVDAMGNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALNDAG 114 (414)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999886544689999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccc-cccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
. +++++|.|++++|||+++||.+|.||+.+.+.+..+ .+..+|.+|.++.++|.+.|+..+...++| .+++
T Consensus 115 ~--~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~ 186 (414)
T PRK12891 115 I--ETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGY------PVHA 186 (414)
T ss_pred C--CCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccC------CCCE
Confidence 8 899999999999999999999999999998866543 345678899999999999998766655554 4679
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
++++|+|||+++|..+...+++++++|..||+|+++||++|+|++|+..++|||.+|+++|.+|+++..+.
T Consensus 187 ~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~--------- 257 (414)
T PRK12891 187 AYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD--------- 257 (414)
T ss_pred EEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999987787546999999999999999876531
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.++.++|||+|++|+.++|+||++|+
T Consensus 258 ---------~~~~t~~vg~I~gG~~~~NvVP~~~~ 283 (414)
T PRK12891 258 ---------APDARATVGMIDARPNSRNTVPGECF 283 (414)
T ss_pred ---------CCCeEEEEEEEEeeCCCcceECCeEE
Confidence 13579999999995468999999996
No 5
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=6.5e-47 Score=356.04 Aligned_cols=250 Identities=39% Similarity=0.655 Sum_probs=218.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
+|++|.++++||+++|+++|++++.+..+||+++++|+.+++|+|+|+|||||||.+|.+|++.|++++|++++.|++.+
T Consensus 26 ~~~~e~~~~~~l~~~~~~~G~~~~~~~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~~g 105 (401)
T TIGR01879 26 LSPEDREAQDLFKKRMRAAGLEVRFDEVGNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKEAY 105 (401)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEecCCcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999999999999999999986544589999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccc-cccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL-RVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~-~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
. +++++|.|++++|||+++|+.++.||+.+.+....+.+ ...|.+|.++.++|++.|.. ...+.++. +.++.+
T Consensus 106 ~--~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~--~~~~~~~~--~~~~~~ 179 (401)
T TIGR01879 106 V--VPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPD--LPNQPLRP--RGDIKA 179 (401)
T ss_pred C--CCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCC--cccccccc--cccccE
Confidence 8 89999999999999999999999999999876543323 23566799999999998843 34445553 346889
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
|+|+|||||++|+..+...+++.+++|..|++|+|+|+++|+|+.|+..+.|||.+|++++.+|+++..+.
T Consensus 180 ~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~--------- 250 (401)
T TIGR01879 180 YVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM--------- 250 (401)
T ss_pred EEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999987786546899999999999999876531
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
..+.++++|.|++++.+.|+||++|+
T Consensus 251 ---------~~~~~~~vg~i~~g~~~~NvVP~~a~ 276 (401)
T TIGR01879 251 ---------GDPTVGTVGKVEARPNGVNVIPGKVT 276 (401)
T ss_pred ---------CCCeEEEEEEEEecCCceEEECCEEE
Confidence 13468899999986578999999996
No 6
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.9e-43 Score=330.97 Aligned_cols=249 Identities=41% Similarity=0.661 Sum_probs=216.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
+|++|.++++||.++|+++|++++.+..+|++++++|..+ .|+|+|.||+||||++|+.|++.|++++|++++.|++.+
T Consensus 34 ~~~~e~~~~~~l~~~l~~~G~~~~~~~~~nl~a~~~g~~~-~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~~~ 112 (412)
T PRK12892 34 YSDAHVAARRRLAAWCEAAGLAVRIDGIGNVFGRLPGPGP-GPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNEHG 112 (412)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCC-CCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999888999999988654 489999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccc-cccc-CCCCCcHHHHHHhCCCChhhHhhhhhccCCCcee
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA-LRVS-DKSGVTVLDALRENSIDIAEESLLQLKYDPASVW 158 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~-~~~~-d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~ 158 (275)
. .++++|.|++++|||+++|+.++.||+.+++.+..+. +... +.++.++.+.+.+.|+.+|.++++|| ++..
T Consensus 113 ~--~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep----~~~~ 186 (412)
T PRK12892 113 I--ATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADR----ARPK 186 (412)
T ss_pred C--CCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccc----cCcc
Confidence 7 8899999999999999899888899999987543221 1112 23577888889899999998888885 4688
Q ss_pred eEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 023912 159 GYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDG 238 (275)
Q Consensus 159 ~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~ 238 (275)
+++++|++||+++|+.+...+++++++|..||+|+++|+++|+++.|+..+.|||.+|++++.+|+++..+.
T Consensus 187 ~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~-------- 258 (412)
T PRK12892 187 GYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRV-------- 258 (412)
T ss_pred EEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc--------
Confidence 999999999999999988888999999999999999999999977787556899999999999999865431
Q ss_pred CCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 239 RSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 239 ~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
. .++++|+|.|++++++.|+||++|+
T Consensus 259 ---------~-~~~~~~vg~i~gg~~~~NvIP~~a~ 284 (412)
T PRK12892 259 ---------C-GPAVVTVGRVALDPGSPSIIPGRVE 284 (412)
T ss_pred ---------C-CCcEEEEEEEEecCCCCeEECCeEE
Confidence 1 3579999999985479999999996
No 7
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=7.2e-42 Score=322.89 Aligned_cols=250 Identities=43% Similarity=0.700 Sum_probs=215.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
+|++|.++++||.++|+++|++++.+..+|++++++|+.+++|+|+|.|||||||.+|..|||+|++++|++++.|++.+
T Consensus 33 ~~~~e~~~~~~l~~~l~~~G~~~~~~~~~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~~~ 112 (414)
T PRK12890 33 LSDEERAARALLAAWMRAAGLEVRRDAAGNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALREAG 112 (414)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEcCCCcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999988889999999876444689999999999999999999999999999999999988
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccc-cccccCCCCCcHHHHHHhCCCChhhHhh--hhhccCCCce
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESL--LQLKYDPASV 157 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~~~l~~~g~~~~~~~~--~e~~~~~~~i 157 (275)
. .++++|.|++++|||.++||.++.||+.+.+.+... .+...+.++..+.+.+.+.|+..+...+ +| |+.+
T Consensus 113 ~--~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e----p~~~ 186 (414)
T PRK12890 113 I--RPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRP----PGAV 186 (414)
T ss_pred C--CCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC----CCCc
Confidence 7 789999999999999888888899999988765422 2333455788888888888887765443 55 3568
Q ss_pred eeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccC
Q 023912 158 WGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYD 237 (275)
Q Consensus 158 ~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~ 237 (275)
+.|+++|++||++++..+...+++.+++|..|++|+|+|+++|+++.|+.++.|||..|+++|.+|+++..+.
T Consensus 187 ~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~------- 259 (414)
T PRK12890 187 AAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL------- 259 (414)
T ss_pred cEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-------
Confidence 8999999999999998888888999999999999999999999976687656899999999999999976532
Q ss_pred CCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 238 GRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 238 ~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.++.++++|.|++++.+.|+||++|+
T Consensus 260 -----------~~~~~~~~g~i~~gg~~~NvIP~~a~ 285 (414)
T PRK12890 260 -----------LHDLVATVGRLDVEPNAINVVPGRVV 285 (414)
T ss_pred -----------CCCeEEEEEEEEECCCCceEECCeEE
Confidence 14678999999985579999999996
No 8
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.9e-40 Score=310.68 Aligned_cols=248 Identities=42% Similarity=0.720 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
+|++|.++++||.++|+++|++++.+..+|++++++|+.++.|+|+|.||+||||.+|.+|+|+|++++|++++.|++.+
T Consensus 35 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~~~ 114 (412)
T PRK12893 35 LTDEDREARDLLAQWMEEAGLTVSVDAIGNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLNDAG 114 (412)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHHcC
Confidence 47889999999999999999999988788999999876433589999999999999999999999999999999999988
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccccc-ccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALR-VSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~-~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
. .++++|.|+|++|||.++|+.++.|++.+.+.+..+.+. ..+.++..+.+.+.+.++.++..+++ .++++
T Consensus 115 ~--~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 186 (412)
T PRK12893 115 I--RTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGR------RAVDA 186 (412)
T ss_pred C--CCCCCeEEEEEccccccccccccccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCccccccc------CCccE
Confidence 7 789999999999999988888899999888654322211 12235555556555666544322221 24789
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
++++|++||+++++.+....++.+++|..|++|+++|+++|+|+.|+..++|||.+|++++.+|+++..+.
T Consensus 187 ~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~~--------- 257 (412)
T PRK12893 187 YLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAAL--------- 257 (412)
T ss_pred EEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999998888888999999999999999999999875685335999999999999999876532
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.+.+++|+|.|++++++.|+||++|+
T Consensus 258 ---------~~~~~~~vg~i~ggg~~~NvVP~~a~ 283 (412)
T PRK12893 258 ---------APDGVATVGRLRVEPNSRNVIPGKVV 283 (412)
T ss_pred ---------CCCceEEEEEEEeeCCCceEECCeeE
Confidence 13578999999985579999999996
No 9
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2.7e-39 Score=305.35 Aligned_cols=252 Identities=44% Similarity=0.747 Sum_probs=210.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~ 80 (275)
.|++|.++++||.++|+++|++++.+..+||+++++|..+..|.|+|.|||||||++|..|||.|+++++++++.|++.+
T Consensus 32 ~s~~e~~~a~~l~~~l~~~g~~~~~~~~~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~~~ 111 (413)
T PRK09290 32 LSPEDLQARDLFAEWMEAAGLTVRVDAVGNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNERG 111 (413)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 37889999999999999999999988888999999875333589999999999999999999999999999999999988
Q ss_pred CCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccccc-ccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceee
Q 023912 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALR-VSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (275)
Q Consensus 81 ~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~-~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~ 159 (275)
. .++++|.|+|++|||.+.||.++.|++.+.+.+..+.+. ..|.++..+.++|.+.|+.+|..++++ .+|+++.+
T Consensus 112 ~--~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~ept~~~~ 187 (413)
T PRK09290 112 I--RPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAA--RARRDIKA 187 (413)
T ss_pred C--CCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccc--cCCCCccE
Confidence 7 788999999999999866766788999988654322221 234567777777777788877766551 12457788
Q ss_pred EEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 023912 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (275)
Q Consensus 160 ~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (275)
++++|+++|.++|+++....++.++||..|++|+++||++|+++.|+..+.|||..+++++.+|+++..+.
T Consensus 188 ~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~--------- 258 (413)
T PRK09290 188 FVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH--------- 258 (413)
T ss_pred EEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999988778999999999999999999999875684335999999999999999876431
Q ss_pred CCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
..+.++++|.|++++.+.|+||++|+
T Consensus 259 ---------~~~~~~~~g~i~~g~~~~NvIP~~a~ 284 (413)
T PRK09290 259 ---------GPDLVATVGRLEVKPNSVNVIPGEVT 284 (413)
T ss_pred ---------CCCeEEEEEEEEEcCCCCeEECCEEE
Confidence 13578999999975579999999996
No 10
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=7.6e-32 Score=256.27 Aligned_cols=208 Identities=21% Similarity=0.317 Sum_probs=162.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEE-eCcccEEEEecCCCCCCCEEEEeccccccCCC------------C---ccCChH
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWV-DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------G---IFDGSL 64 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~-d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------G---~~D~~~ 64 (275)
+|++|.++++||.++|+++|++++. +...|+++++.+ .+ +|+|+|+||||+||.+ | ++|+|+
T Consensus 62 ~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~-~~-g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg 139 (437)
T PLN02693 62 LGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGT-GE-PPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDG 139 (437)
T ss_pred CCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECC-CC-CCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchH
Confidence 5899999999999999999999764 345799999843 22 5899999999999964 2 689999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhh
Q 023912 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (275)
Q Consensus 65 gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~ 144 (275)
+++++|+++++|++.+. .++++|.|+|++|||+ +.|++.++. .|..
T Consensus 140 ~~A~~l~Aa~~L~~~~~--~~~g~V~~if~pdEE~------~~Ga~~~i~-----------------------~g~~--- 185 (437)
T PLN02693 140 HVAMLLGAAKILQEHRH--HLQGTVVLIFQPAEEG------LSGAKKMRE-----------------------EGAL--- 185 (437)
T ss_pred HHHHHHHHHHHHHhCcc--cCCceEEEEEEEcccc------hhhHHHHHH-----------------------CCCC---
Confidence 99999999999998875 6789999999999994 247877763 1221
Q ss_pred HhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 023912 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (275)
Q Consensus 145 ~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~ 224 (275)
.+.+++++.|.++...........|. .++|..+++|+|+||++|++ .|+. ++|||.+|+++|.+|+
T Consensus 186 ----------~~~~~iig~h~~p~~~~g~~~~~~g~--~~~G~~~~~i~v~Gk~aHaa-~P~~-G~nAI~~aa~~i~~l~ 251 (437)
T PLN02693 186 ----------KNVEAIFGIHLSPRTPFGKAASRAGS--FMAGAGVFEAVITGKGGHAA-IPQH-TIDPVVAASSIVLSLQ 251 (437)
T ss_pred ----------CCCCEEEEEecCCCCCCeeEEeccCc--ccccceEEEEEEEcccccCC-CCCC-CcCHHHHHHHHHHHHH
Confidence 12467888898865322111111121 24789999999999999996 7987 5999999999999999
Q ss_pred HHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++..+. .+++ .+.++|||.|+| |.++|+||++|+
T Consensus 252 ~~~~~~--------------~~~~-~~~ti~vg~i~G-G~~~NvVPd~a~ 285 (437)
T PLN02693 252 QLVSRE--------------TDPL-DSKVVTVSKVNG-GNAFNVIPDSIT 285 (437)
T ss_pred HHhccc--------------CCCC-CCcEEEEEEEEc-CCCCceECCeEE
Confidence 986542 1233 578999999999 589999999997
No 11
>PRK07473 carboxypeptidase; Provisional
Probab=99.98 E-value=3.3e-31 Score=247.54 Aligned_cols=194 Identities=22% Similarity=0.200 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEeC----c-ccEEEEecCCCCCCCEEEEeccccccCCC------------------CccCC
Q 023912 6 VRAGNLIRQWMEDAGLRTWVDH----L-GNVHGRVEGLNASAQALLIGSHLDTVVDA------------------GIFDG 62 (275)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~----~-~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------G~~D~ 62 (275)
.++++|+.++|+++|++++... . .|+++++++..++.|+|+|.|||||||+. |++||
T Consensus 34 ~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~ 113 (376)
T PRK07473 34 NRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDM 113 (376)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhc
Confidence 3677899999999999987632 2 37899987543345899999999999642 78899
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCCh
Q 023912 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDI 142 (275)
Q Consensus 63 ~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~ 142 (275)
|+|++++|.|++.|++.+. .++.+|.|+|++|||. ++.|++.+... .....
T Consensus 114 Kgglaa~l~A~~~l~~~~~--~~~~~v~~~~~~dEE~-----g~~g~~~~~~~----------------------~~~~~ 164 (376)
T PRK07473 114 KGGNYLALEAIRQLARAGI--TTPLPITVLFTPDEEV-----GTPSTRDLIEA----------------------EAARN 164 (376)
T ss_pred hHHHHHHHHHHHHHHHcCC--CCCCCEEEEEeCCccc-----CCccHHHHHHH----------------------hhccC
Confidence 9999999999999998876 6678999999999996 34577776531 01111
Q ss_pred hhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 023912 143 AEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVL 222 (275)
Q Consensus 143 ~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~ 222 (275)
+.++ +.|++....+++.+++|..|++|+++|+++|+|++|+.+ +|||.+|++++.+
T Consensus 165 d~~i-----------------------v~ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g-~nAi~~~~~~i~~ 220 (376)
T PRK07473 165 KYVL-----------------------VPEPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEG-RSAIREMARQILA 220 (376)
T ss_pred CEEE-----------------------EeCCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccC-cCHHHHHHHHHHH
Confidence 1111 223333345688999999999999999999998789875 8999999999999
Q ss_pred HHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 223 LERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
|+++.. ..+++|||.|++ |.+.|+||++|+
T Consensus 221 l~~~~~---------------------~~~~~~vg~i~g-g~~~n~VP~~~~ 250 (376)
T PRK07473 221 IDAMTT---------------------EDCTFSVGIVHG-GQWVNCVATTCT 250 (376)
T ss_pred HHHhcC---------------------CCceEeEeeEEc-CCCCcCCCCceE
Confidence 987542 246899999999 588999999996
No 12
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=242.63 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCc--ccEEEEecCCCCCCCEEEEeccccccCC-----------------CCccC
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHL--GNVHGRVEGLNASAQALLIGSHLDTVVD-----------------AGIFD 61 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~--~nvia~~~g~~~~~~~vll~aH~DtVp~-----------------~G~~D 61 (275)
||++|+++++||+++|+++|+++..... ..++++++|..+ +|+|.|+++||.+|. .|.+|
T Consensus 27 L~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~-g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD 105 (392)
T COG1473 27 LGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKP-GPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD 105 (392)
T ss_pred cchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCC-CCEEEEEeecccCccccccCCCcccCCCCCcccCCch
Confidence 6899999999999999999999443332 359999987654 479999999999994 26788
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCC
Q 023912 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSID 141 (275)
Q Consensus 62 ~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~ 141 (275)
+++. ++|.++++|++... +++++|+|+|||+||+. .|++.++. + |..
T Consensus 106 ~Hta--~lLgaA~~L~~~~~--~~~Gtv~~ifQPAEE~~------~Ga~~mi~------------~-----------G~~ 152 (392)
T COG1473 106 GHTA--ILLGAALALAEHKD--NLPGTVRLIFQPAEEGG------GGAKAMIE------------D-----------GVF 152 (392)
T ss_pred HHHH--HHHHHHHHHHhhhh--hCCcEEEEEeccccccc------ccHHHHHh------------c-----------CCc
Confidence 7755 46889999998854 78999999999999962 27888773 2 321
Q ss_pred hhhHhhhhhccCCCc-eeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHH
Q 023912 142 IAEESLLQLKYDPAS-VWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI 220 (275)
Q Consensus 142 ~~~~~~~e~~~~~~~-i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i 220 (275)
.+ ++++|++|+.++..........|.+ ..+...|+|+|+||++|+ +.|+. ++||+.+++.++
T Consensus 153 -------------~~~vD~v~g~H~~p~~~~g~v~~~~G~~--~aa~d~~~i~~~GkggH~-a~Ph~-~~d~i~aa~~~v 215 (392)
T COG1473 153 -------------DDFVDAVFGLHPGPGLPVGTVALRPGAL--MAAADEFEITFKGKGGHA-AAPHL-GIDALVAAAQLV 215 (392)
T ss_pred -------------cccccEEEEecCCCCCCCceEEeecccc--eeecceEEEEEEeCCccc-CCccc-ccCHHHHHHHHH
Confidence 13 8999999998772222223333433 368899999999999999 59998 599999999999
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 221 VLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.+||.+.++. ++|. .+.++|+|++++ |++.|||||+++
T Consensus 216 ~~lq~ivsr~--------------~~p~-~~~vv~vg~~~a-G~a~NVIpd~A~ 253 (392)
T COG1473 216 TALQTIVSRN--------------VDPL-DSAVVTVGKIEA-GTAANVIPDSAE 253 (392)
T ss_pred HHHHHHHhcc--------------cCCc-cCeEEEEEEecC-CCcCCcCCCeeE
Confidence 9999999875 3444 478999999999 599999999986
No 13
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.97 E-value=3.1e-30 Score=244.08 Aligned_cols=209 Identities=18% Similarity=0.256 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEe---------------------CcccEEEEecCCCCCCCEEEEeccccccCCC--
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVD---------------------HLGNVHGRVEGLNASAQALLIGSHLDTVVDA-- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d---------------------~~~nvia~~~g~~~~~~~vll~aH~DtVp~~-- 57 (275)
.|++|.++++||+++|+++|++++.. ..+||+++++|..+ .|+|+|.+||||||++
T Consensus 32 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~l~l~~H~Dtvp~~~~ 110 (422)
T PRK06915 32 VSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSGG-GKSMILNGHIDVVPEGDV 110 (422)
T ss_pred CCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcCCCC-CCeEEEEeeccccCCCCc
Confidence 36789999999999999999997531 24799999987643 5899999999999963
Q ss_pred --------------------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccc
Q 023912 58 --------------------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (275)
Q Consensus 58 --------------------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (275)
|..|||+|++++|.|++.|++.+. +++++|.|+|++|||. +..|+..+..
T Consensus 111 ~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~-----g~~G~~~~~~--- 180 (422)
T PRK06915 111 NQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGI--ELKGDVIFQSVIEEES-----GGAGTLAAIL--- 180 (422)
T ss_pred ccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeccccc-----CCcchHHHHh---
Confidence 677999999999999999999886 7889999999999995 2346655431
Q ss_pred cccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcC
Q 023912 118 VSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS 197 (275)
Q Consensus 118 ~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~ 197 (275)
.++.+|.++++ |+.+ ..++.+++|..|++|+++|+
T Consensus 181 --------------------~~~~~d~~i~~-----------------------ep~~--~~i~~~~~G~~~~~i~v~G~ 215 (422)
T PRK06915 181 --------------------RGYKADGAIIP-----------------------EPTN--MKFFPKQQGSMWFRLHVKGK 215 (422)
T ss_pred --------------------cCcCCCEEEEC-----------------------CCCC--ccceeecccEEEEEEEEEee
Confidence 12222222222 2122 24667899999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 198 QGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 198 ~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++|+| .|+. +.|||.++++++.+|+++...... +...+.......+.++|||.|+| |.+.|+||++|+
T Consensus 216 ~~H~s-~p~~-g~nAi~~~~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~t~~v~~i~g-G~~~nvvP~~a~ 283 (422)
T PRK06915 216 AAHGG-TRYE-GVSAIEKSMFVIDHLRKLEEKRND------RITDPLYKGIPIPIPINIGKIEG-GSWPSSVPDSVI 283 (422)
T ss_pred ccccC-CCCc-CcCHHHHHHHHHHHHHHHHHHhcc------ccCCCcccCCCCCceEeEEEeeC-CCCCCccCcEEE
Confidence 99996 8987 499999999999999987642100 00000000011256899999999 589999999986
No 14
>PLN02280 IAA-amino acid hydrolase
Probab=99.97 E-value=9.8e-30 Score=243.91 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEe-CcccEEEEecCCCCCCCEEEEeccccccCCC------------C---ccCChH
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVD-HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------G---IFDGSL 64 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d-~~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------G---~~D~~~ 64 (275)
+|++|.++++||+++|+++|++++.. ...|+++++ |..+ +|+|+|+||||+||.+ | ++|+++
T Consensus 112 ls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~ 189 (478)
T PLN02280 112 LAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWI-GTGG-PPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA 189 (478)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEE-CCCC-CCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH
Confidence 47899999999999999999998753 346899998 5433 4899999999999964 1 356777
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhh
Q 023912 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (275)
Q Consensus 65 gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~ 144 (275)
+++++|+++++|++.+. +++++|.|+|++|||. + .|++.++. .|..
T Consensus 190 ~~A~~l~a~~~L~~~~~--~~~g~V~~if~pdEE~-----g-~Ga~~li~-----------------------~g~~--- 235 (478)
T PLN02280 190 HVAMLLGAAKILKSREH--LLKGTVVLLFQPAEEA-----G-NGAKRMIG-----------------------DGAL--- 235 (478)
T ss_pred HHHHHHHHHHHHHhccc--cCCceEEEEecccccc-----c-chHHHHHH-----------------------CCCC---
Confidence 89999999999998876 7889999999999995 2 38887763 1221
Q ss_pred HhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 023912 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (275)
Q Consensus 145 ~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~ 224 (275)
.++++++.+|+..+......+...+. ..+|..|++|+|+||++|++ .|+. ++|||.+|++++.+|+
T Consensus 236 ----------~~~d~~~~~h~~~~~p~g~ig~~~~~--~~~G~~~~~I~v~Gk~aHas-~P~~-G~NAI~~aa~li~~l~ 301 (478)
T PLN02280 236 ----------DDVEAIFAVHVSHEHPTAVIGSRPGP--LLAGCGFFRAVISGKKGRAG-SPHH-SVDLILAASAAVISLQ 301 (478)
T ss_pred ----------cCCCEEEEEecCCCCCCceeEecccc--cccceeEEEEEEECcchhcC-Cccc-CcCHHHHHHHHHHHHH
Confidence 13567889998432110001112222 34699999999999999996 8987 5999999999999999
Q ss_pred HHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++..+. .++. ...++|+|.|+| |.++|+||++|+
T Consensus 302 ~l~~r~--------------~~~~-~~~tvnvg~I~G-G~~~NvIPd~~~ 335 (478)
T PLN02280 302 GIVSRE--------------ANPL-DSQVVSVTTMDG-GNNLDMIPDTVV 335 (478)
T ss_pred HHHhcc--------------cCCC-CCcEEEEEEEEc-cCCCCEeCCEEE
Confidence 986542 1223 467999999998 599999999997
No 15
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=1.3e-29 Score=236.20 Aligned_cols=203 Identities=20% Similarity=0.273 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeC----cccEEEEecCCCCCCCEEEEeccccccCCC-------------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDH----LGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~----~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------- 57 (275)
.|++|.++++||.++|+++|++++.+. ..|+++++ |.. .|+|+|.+||||||++
T Consensus 17 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l 93 (377)
T PRK08588 17 VNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKL 93 (377)
T ss_pred CCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEE
Confidence 367899999999999999999987543 35999998 432 3899999999999973
Q ss_pred ---CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHH
Q 023912 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (275)
Q Consensus 58 ---G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~ 134 (275)
|..|||+|++++|.+++.|++.+. .++++|.|+|++|||. ++.|++.++..
T Consensus 94 ~GrG~~D~Kgg~aa~l~a~~~l~~~~~--~~~~~i~l~~~~dEE~-----g~~G~~~~~~~------------------- 147 (377)
T PRK08588 94 YGRGATDMKSGLAALVIAMIELKEQGQ--LLNGTIRLLATAGEEV-----GELGAKQLTEK------------------- 147 (377)
T ss_pred EecCcccccchHHHHHHHHHHHHHcCC--CCCCcEEEEEEccccc-----CchhHHHHHhc-------------------
Confidence 567999999999999999999887 7889999999999995 34688877631
Q ss_pred HHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHH
Q 023912 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (275)
Q Consensus 135 l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~ 214 (275)
++. .+++.++ +.++. ...++.+++|..+++|+++|+++|++ .|+. +.|||.
T Consensus 148 ----~~~-------------~~~d~~i--------~~ep~--~~~i~~~~~G~~~~~i~~~G~~~Hss-~p~~-g~nAi~ 198 (377)
T PRK08588 148 ----GYA-------------DDLDALI--------IGEPS--GHGIVYAHKGSMDYKVTSTGKAAHSS-MPEL-GVNAID 198 (377)
T ss_pred ----Ccc-------------CCCCEEE--------EecCC--CceeEEEEEEEEEEEEEEEeechhcc-CCcc-ccCHHH
Confidence 111 0112221 11111 23577889999999999999999996 8987 599999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+|++++.+|+++..+... .+...+.++++++.|++ |.+.|+||++|+
T Consensus 199 ~~~~~l~~l~~~~~~~~~------------~~~~~~~~t~~v~~i~g-G~~~nvip~~~~ 245 (377)
T PRK08588 199 PLLEFYNEQKEYFDSIKK------------HNPYLGGLTHVVTIING-GEQVNSVPDEAE 245 (377)
T ss_pred HHHHHHHHHHHHhhhhcc------------cCccCCCCceeeeEEeC-CCcCCcCCCeEE
Confidence 999999999987543210 01122578999999999 589999999986
No 16
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=1e-29 Score=236.51 Aligned_cols=210 Identities=21% Similarity=0.246 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEe---CcccEEEEecCCCCCCCEEEEeccccccCCC--------------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d---~~~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------------- 57 (275)
+|++|.++++||.++|+++|++++.. ..+|+++++ |+ ++|+|+|.+||||||++
T Consensus 17 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iy 93 (375)
T PRK13009 17 VTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLY 93 (375)
T ss_pred CCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEe-cC--CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEE
Confidence 36789999999999999999998743 357999988 54 25899999999999964
Q ss_pred --CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHH
Q 023912 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDAL 135 (275)
Q Consensus 58 --G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l 135 (275)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.. ++.|++.++..+
T Consensus 94 GrG~~D~Kgg~aa~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~~----~~~G~~~~~~~~------------------- 148 (375)
T PRK13009 94 GRGAADMKGSLAAFVVAAERFVAAHP--DHKGSIAFLITSDEEGP----AINGTVKVLEWL------------------- 148 (375)
T ss_pred ecCCccChHHHHHHHHHHHHHHHhcC--CCCceEEEEEEeecccc----cccCHHHHHHHH-------------------
Confidence 567999999999999999998876 78899999999999962 345888776421
Q ss_pred HhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHH
Q 023912 136 RENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTA 215 (275)
Q Consensus 136 ~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~ 215 (275)
...+..+|.++++||+.. ......++.+++|..+++|+++|+++|++ .|+. +.||+..
T Consensus 149 ~~~~~~~d~~i~~ep~~~--------------------~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~-~p~~-g~nAi~~ 206 (375)
T PRK13009 149 KARGEKIDYCIVGEPTST--------------------ERLGDVIKNGRRGSLTGKLTVKGVQGHVA-YPHL-ADNPIHL 206 (375)
T ss_pred HHcCcCCCEEEEcCCCcc--------------------cCCCCeEEEecceEEEEEEEEEecCcccC-CCCc-ccCHHHH
Confidence 112222222223332110 00111356788999999999999999996 7987 5999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 216 AAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 216 aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+++++.+|+....+. ..+...+.+++++.|++|+.+.|+||++|+
T Consensus 207 ~~~~l~~l~~~~~~~--------------~~~~~~~~~~~i~~i~~G~~~~nvip~~~~ 251 (375)
T PRK13009 207 AAPALAELAATEWDE--------------GNEFFPPTSLQITNIDAGTGATNVIPGELE 251 (375)
T ss_pred HHHHHHHHHhhhccC--------------CCccCCCceEEEEEEecCCCCCcccCCcEE
Confidence 999999998764321 011224678999999985347899999986
No 17
>PRK07338 hypothetical protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=238.02 Aligned_cols=195 Identities=23% Similarity=0.219 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeCc------------------ccEEEEecCCCCCCCEEEEeccccccCCC---------
Q 023912 5 SVRAGNLIRQWMEDAGLRTWVDHL------------------GNVHGRVEGLNASAQALLIGSHLDTVVDA--------- 57 (275)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d~~------------------~nvia~~~g~~~~~~~vll~aH~DtVp~~--------- 57 (275)
+.++++||+++|+++|++++..+. +||++++++.. .++|+|.|||||||++
T Consensus 39 ~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~ 116 (402)
T PRK07338 39 LARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSW 116 (402)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeE
Confidence 468999999999999998875321 48999996542 3579999999999852
Q ss_pred ---------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCC
Q 023912 58 ---------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSG 128 (275)
Q Consensus 58 ---------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g 128 (275)
|++|||+|++++|+|++.|++.+. +++++|.|+|++|||. +..|++.++...
T Consensus 117 ~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~g~~~~~~~~------------ 177 (402)
T PRK07338 117 LDDGTLNGPGVADMKGGIVVMLAALLAFERSPL--ADKLGYDVLINPDEEI-----GSPASAPLLAEL------------ 177 (402)
T ss_pred eeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCC--CCCCCEEEEEECCccc-----CChhhHHHHHHH------------
Confidence 678999999999999999998876 6778999999999995 335776665310
Q ss_pred CcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCC
Q 023912 129 VTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSM 208 (275)
Q Consensus 129 ~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~ 208 (275)
.. ..-+.++.|++ .....++.+++|..+++|+++|+++|+|..|+.+
T Consensus 178 ----------~~-----------------~~~~~i~~ep~------~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g 224 (402)
T PRK07338 178 ----------AR-----------------GKHAALTYEPA------LPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEG 224 (402)
T ss_pred ----------hc-----------------cCcEEEEecCC------CCCCcEEeecceeEEEEEEEEeEcccCCCCcccC
Confidence 00 01123444432 2223466788999999999999999998568874
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 209 RQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 209 ~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.|||.+|++++.+|+++... . ...++|+|.|++ |.+.|+||++|+
T Consensus 225 -~nAi~~~~~~i~~l~~l~~~------------------~-~~~t~~vg~i~g-G~~~nvVP~~a~ 269 (402)
T PRK07338 225 -RNAIVAAAELALALHALNGQ------------------R-DGVTVNVAKIDG-GGPLNVVPDNAV 269 (402)
T ss_pred -ccHHHHHHHHHHHHHhhhcc------------------C-CCcEEEEEEEec-CCCCceeccccE
Confidence 99999999999999886542 1 356899999999 589999999986
No 18
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.97 E-value=1e-29 Score=235.53 Aligned_cols=197 Identities=19% Similarity=0.249 Sum_probs=155.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeC-------cccEEEEecCCCCCCCEEEEeccccccCCC---------------C
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDH-------LGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------G 58 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~-------~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------G 58 (275)
.|++|.++++||.++|+++|++++.+. ..|++++++|+. +.|+|+|+|||||||++ |
T Consensus 15 ~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G 93 (361)
T TIGR01883 15 ESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLG 93 (361)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCC
Confidence 367899999999999999999987654 579999998764 34899999999999963 4
Q ss_pred c----cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHH
Q 023912 59 I----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (275)
Q Consensus 59 ~----~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~ 134 (275)
. .|||+|++++|.+++.|++.+ .++++|.|+|++|||. ++.|++.+...
T Consensus 94 ~~~~g~D~k~g~a~~l~~~~~l~~~~---~~~~~v~~~~~~~EE~-----g~~G~~~~~~~------------------- 146 (361)
T TIGR01883 94 GTILGADDKAGVAAMLEAMDVLSTEE---TPHGTIEFIFTVKEEL-----GLIGMRLFDES------------------- 146 (361)
T ss_pred CeEeeccccHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccc-----CchhHhHhChh-------------------
Confidence 4 799999999999999998875 4678999999999995 34677765420
Q ss_pred HHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHH
Q 023912 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (275)
Q Consensus 135 l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~ 214 (275)
+ +..-+.+|++++ .....++.+++|..|++|+|+|+++|+|+.|+.+ +||+.
T Consensus 147 ----~-----------------~~~~~~~~~~~~------~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g-~nAi~ 198 (361)
T TIGR01883 147 ----K-----------------ITAAYGYCLDAP------GEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDG-ISAIS 198 (361)
T ss_pred ----h-----------------cCcceeEEEeCC------CCcceEEecCCceEEEEEEEEeeecCCCCCcccC-cCHHH
Confidence 0 111223444432 1122367788999999999999999987689875 89999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.++++|.+|+.. . .....++|+|.|++ |.+.|+||++|+
T Consensus 199 ~~~~~i~~l~~~--~------------------~~~~~~~~i~~i~g-G~~~nvVP~~~~ 237 (361)
T TIGR01883 199 VARMAIHAMRLG--R------------------IDEETTANIGSFSG-GVNTNIVQDEQL 237 (361)
T ss_pred HHHHHHHhcccc--C------------------CCCccccccceeec-CCccCccCCceE
Confidence 999999988642 1 11346789999999 589999999996
No 19
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.97 E-value=1.7e-29 Score=239.58 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEE---------------------eCcccEEEEecCCCCCCCEEEEeccccccCCC--
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWV---------------------DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~---------------------d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~-- 57 (275)
.|++|.++++||+++|+++|++++. +..+||+++++|..++.|+|+|.|||||||++
T Consensus 35 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~ 114 (427)
T PRK06837 35 TRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPL 114 (427)
T ss_pred CCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEecCCCCCCCeEEEEeecccCCCCCc
Confidence 3678999999999999999998753 23579999998764446899999999999974
Q ss_pred --------------------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccc
Q 023912 58 --------------------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (275)
Q Consensus 58 --------------------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (275)
|+.|||+|++++|.+++.|++.+. .++++|.|+|+++||. +..|+..+..
T Consensus 115 ~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----~g~g~~~~~~--- 184 (427)
T PRK06837 115 DLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGL--APAARVHFQSVIEEES-----TGNGALSTLQ--- 184 (427)
T ss_pred cccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCC--CCCCcEEEEEEecccc-----CCHhHHHHHh---
Confidence 778999999999999999999887 7889999999999995 2235543331
Q ss_pred cccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcC
Q 023912 118 VSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS 197 (275)
Q Consensus 118 ~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~ 197 (275)
.++..|.++++| +. ...++.+++|..+++|+++|+
T Consensus 185 --------------------~~~~~d~~iv~e-----------------------p~--~~~i~~~~~G~~~~~i~v~G~ 219 (427)
T PRK06837 185 --------------------RGYRADACLIPE-----------------------PT--GEKLVRAQVGVIWFRLRVRGA 219 (427)
T ss_pred --------------------cCcCCCEEEEcC-----------------------CC--CCccccccceeEEEEEEEEee
Confidence 122222222222 11 224667889999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 198 QGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 198 ~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++|+| .|+. +.||+..++++|.+|+++........... ........+.++|++.|++ |.+.|+||++|+
T Consensus 220 ~~Hs~-~p~~-g~nAi~~~~~~i~~l~~~~~~~~~~~~~~-----~~~~~~~~~~t~ni~~i~g-G~~~nvVP~~~~ 288 (427)
T PRK06837 220 PVHVR-EAGT-GANAIDAAYHLIQALRELEAEWNARKASD-----PHFEDVPHPINFNVGIIKG-GDWASSVPAWCD 288 (427)
T ss_pred ccccC-Cccc-CcCHHHHHHHHHHHHHHHHHHHhhcccCC-----CcccCCCCceeEeeeeEeC-CCCCCccCCEEE
Confidence 99997 7876 58999999999999998753210000000 0000011356899999998 589999999986
No 20
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.97 E-value=3.7e-29 Score=232.71 Aligned_cols=210 Identities=21% Similarity=0.247 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEe---CcccEEEEecCCCCCCCEEEEeccccccCCC--------------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d---~~~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------------- 57 (275)
.|++|.++++||.++|+++|++++.. ..+|++++. |. ..|+|+|.+|+||||++
T Consensus 14 ~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~y 90 (370)
T TIGR01246 14 VTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLY 90 (370)
T ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEE
Confidence 36789999999999999999998653 456999986 33 35899999999999973
Q ss_pred --CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHH
Q 023912 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDAL 135 (275)
Q Consensus 58 --G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l 135 (275)
|..|||+|++++|.+++.|++.+. +++++|.|+|++|||.. +..|++.+...+
T Consensus 91 GrG~~D~Kgg~a~~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~~----~~~G~~~~~~~~------------------- 145 (370)
T TIGR01246 91 GRGAADMKGSLAAFIVAAERFVKKNP--DHKGSISLLITSDEEGT----AIDGTKKVVETL------------------- 145 (370)
T ss_pred ecccccchHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEeccccC----CCcCHHHHHHHH-------------------
Confidence 567999999999999999988876 78899999999999962 235888776321
Q ss_pred HhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHH
Q 023912 136 RENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTA 215 (275)
Q Consensus 136 ~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~ 215 (275)
...+..+|.++++|+ +... .....++.+++|..+++|+++|+++|++ .|+. ++||+..
T Consensus 146 ~~~~~~~d~~i~~ep-----------------~~~~---~~~~~i~~~~~G~~~~~v~v~G~~~H~~-~p~~-g~nAi~~ 203 (370)
T TIGR01246 146 MARDELIDYCIVGEP-----------------SSVK---KLGDVIKNGRRGSITGNLTIKGIQGHVA-YPHL-ANNPIHK 203 (370)
T ss_pred HhcCCCCCEEEEcCC-----------------CCcc---cCCceEEEeeeEEEEEEEEEEccCcccC-Cccc-CCCHHHH
Confidence 111222222222221 1100 0011366788999999999999999996 7987 5999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 216 AAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 216 aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
|++++..|++..... ......+++++++.|++|..+.|+||++|+
T Consensus 204 ~~~~i~~l~~~~~~~--------------~~~~~~~~t~~i~~i~~g~~~~nvvP~~~~ 248 (370)
T TIGR01246 204 AAPALAELTAIKWDE--------------GNEFFPPTSLQITNIHAGTGANNVIPGELY 248 (370)
T ss_pred HHHHHHHHhhhhhcc--------------CCccCCCCceEeeeeecCCCCCcccCCceE
Confidence 999999998753321 011225679999999985347899999986
No 21
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.97 E-value=6.5e-29 Score=234.52 Aligned_cols=195 Identities=21% Similarity=0.208 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeC-----cccEEEEecCCCCCCCEEEEeccccccCCC------------------CccC
Q 023912 5 SVRAGNLIRQWMEDAGLRTWVDH-----LGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------GIFD 61 (275)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d~-----~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------G~~D 61 (275)
+.++++||.++|+++|++++.+. ..||+++++|+. .|+|+|.||||+||.+ |+.|
T Consensus 59 ~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~--~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D 136 (410)
T PRK06133 59 LKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTG--KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIAD 136 (410)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCC--CceEEEEeecCccCCCCccCCCCEEEECCEEECCcccc
Confidence 45899999999999999987643 258999997753 4899999999999963 5689
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCC
Q 023912 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSID 141 (275)
Q Consensus 62 ~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~ 141 (275)
||+|++++|++++.|++.+. +++++|.|+|++|||. ++.|++.+.... ..
T Consensus 137 ~kgg~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~G~~~~~~~~----------------------~~- 186 (410)
T PRK06133 137 DKGGVAVILHALKILQQLGF--KDYGTLTVLFNPDEET-----GSPGSRELIAEL----------------------AA- 186 (410)
T ss_pred chHHHHHHHHHHHHHHHcCC--CCCCCEEEEEECCccc-----CCccHHHHHHHH----------------------hc-
Confidence 99999999999999999886 6789999999999995 346888776321 00
Q ss_pred hhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHH
Q 023912 142 IAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIV 221 (275)
Q Consensus 142 ~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~ 221 (275)
+.+..+..| + ......++.+++|..|++|+++|+++|||+.|+.+ .|||..+++++.
T Consensus 187 --------------~~d~~i~~e--p------~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g-~nAi~~~~~~i~ 243 (410)
T PRK06133 187 --------------QHDVVFSCE--P------GRAKDALTLATSGIATALLEVKGKASHAGAAPELG-RNALYELAHQLL 243 (410)
T ss_pred --------------cCCEEEEeC--C------CCCCCCEEEeccceEEEEEEEEeeccccCCCcccC-cCHHHHHHHHHH
Confidence 112222221 1 11112466788999999999999999987789874 899999999999
Q ss_pred HHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 222 LLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.|+++... . ...+++++.|++ |++.|+||++|+
T Consensus 244 ~l~~~~~~------------------~-~~~t~~~~~i~g-G~~~nvIP~~~~ 276 (410)
T PRK06133 244 QLRDLGDP------------------A-KGTTLNWTVAKA-GTNRNVIPASAS 276 (410)
T ss_pred HHHhccCC------------------C-CCeEEEeeEEEC-CCCCceeCCccE
Confidence 99875432 2 357899999999 589999999986
No 22
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.97 E-value=3e-29 Score=233.78 Aligned_cols=208 Identities=24% Similarity=0.258 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeC----cc----cEEEEecCCCCCCCEEEEeccccccCCC----------------
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDH----LG----NVHGRVEGLNASAQALLIGSHLDTVVDA---------------- 57 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~----~~----nvia~~~g~~~~~~~vll~aH~DtVp~~---------------- 57 (275)
|++|.++++||.++|+++|++++... .. |+++.+.|.. ..|+|+|.+||||||.+
T Consensus 17 ~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~ 95 (375)
T TIGR01910 17 GGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKD 95 (375)
T ss_pred CcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEEC
Confidence 57899999999999999999986532 12 4677777753 35899999999999974
Q ss_pred ------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcH
Q 023912 58 ------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTV 131 (275)
Q Consensus 58 ------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~ 131 (275)
|.+|||++++++|++++.|++.+. +++++|.|+|+++||. ++.|++.++..
T Consensus 96 g~i~grG~~D~k~~~a~~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~-----g~~G~~~~~~~---------------- 152 (375)
T TIGR01910 96 GKLYGRGATDMKGGLVALLYALKAIREAGI--KPNGNIILQSVVDEES-----GEAGTLYLLQR---------------- 152 (375)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHHcCC--CCCccEEEEEEcCccc-----CchhHHHHHHc----------------
Confidence 678999999999999999999876 7889999999999995 35688887631
Q ss_pred HHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCC
Q 023912 132 LDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD 211 (275)
Q Consensus 132 ~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~d 211 (275)
+.. .+.+..+ .. ++.+ ...++.+++|..+++|+++|+++|+| .|+. +.|
T Consensus 153 -------~~~-------------~~~d~~i--~~------~~~~-~~~v~~~~~G~~~~~i~~~G~~~Hs~-~p~~-g~n 201 (375)
T TIGR01910 153 -------GYF-------------KDADGVL--IP------EPSG-GDNIVIGHKGSIWFKLRVKGKQAHAS-FPQF-GVN 201 (375)
T ss_pred -------CCC-------------CCCCEEE--EC------CCCC-CCceEEEecceEEEEEEEeeeecccC-CCCc-chh
Confidence 110 0011111 11 2222 34577889999999999999999997 7876 599
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 212 PMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 212 Ai~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
||.+|+++|.+|+++...... +. + .......+++|++.|++ |+..|+||++|+
T Consensus 202 Ai~~~~~~l~~l~~~~~~~~~------~~--~-~~~~~~~~t~~i~~i~g-G~~~nviP~~~~ 254 (375)
T TIGR01910 202 AIMKLAKLITELNELEEHIYA------RN--S-YGFIPGPITFNPGVIKG-GDWVNSVPDYCE 254 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhh------cc--c-ccccCCCccccceeEEC-CCCcCcCCCEEE
Confidence 999999999999987543100 00 0 00012468999999999 599999999996
No 23
>PRK13004 peptidase; Reviewed
Probab=99.96 E-value=9.4e-29 Score=232.49 Aligned_cols=203 Identities=23% Similarity=0.255 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeE-EEeCcccEEEEecCCCCCCCEEEEeccccccCCC----------------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRT-WVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v-~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------------- 57 (275)
.|++|.++++||.++|+++|+++ +.+..+|+++++++. .|+|+|.+||||||.+
T Consensus 30 ~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGr 106 (399)
T PRK13004 30 ESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGR 106 (399)
T ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeC
Confidence 47889999999999999999984 456678999998653 2899999999999963
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHh
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~ 137 (275)
|..|||++++++|.|++.|++.+. .++++|.|+|++|||.. +..|++.+.. +
T Consensus 107 G~~D~Kg~~aa~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~~----~g~~~~~~~~----------------------~ 158 (399)
T PRK13004 107 GTSDQKGGMASMVYAAKIIKDLGL--DDEYTLYVTGTVQEEDC----DGLCWRYIIE----------------------E 158 (399)
T ss_pred CccccchHHHHHHHHHHHHHhcCC--CCCCeEEEEEEcccccC----cchhHHHHHH----------------------h
Confidence 567999999999999999999887 78899999999999952 2235554442 1
Q ss_pred CCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHH
Q 023912 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (275)
Q Consensus 138 ~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa 217 (275)
.++.++..+++ ++. ...++.+++|..+++|+++|+++|+| .|+. +.|||.+++
T Consensus 159 ~~~~~d~~i~~-----------------------e~~--~~~i~~~~~G~~~~~v~v~G~~~Ha~-~p~~-g~nAi~~~~ 211 (399)
T PRK13004 159 DKIKPDFVVIT-----------------------EPT--DLNIYRGQRGRMEIRVETKGVSCHGS-APER-GDNAIYKMA 211 (399)
T ss_pred cCCCCCEEEEc-----------------------cCC--CCceEEecceEEEEEEEEeccccccC-CCCC-CCCHHHHHH
Confidence 11211111111 111 23467788999999999999999997 7987 599999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++|.+|+.+..... .+...+..++|++.|.+|+.+.|+||++|+
T Consensus 212 ~~i~~l~~~~~~~~-------------~~~~~~~~~~~v~~i~~g~~~~nvvP~~~~ 255 (399)
T PRK13004 212 PILNELEELNPNLK-------------EDPFLGKGTLTVSDIFSTSPSRCAVPDSCA 255 (399)
T ss_pred HHHHHHHhhccccc-------------cCCcCCCceEEEeeeecCCCCCCccCCEEE
Confidence 99999998754310 011224568999999985458999999986
No 24
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.96 E-value=7.1e-29 Score=238.51 Aligned_cols=206 Identities=21% Similarity=0.243 Sum_probs=156.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCC--CCCCEEEEeccccccCCCC---------------------
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLN--ASAQALLIGSHLDTVVDAG--------------------- 58 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~--~~~~~vll~aH~DtVp~~G--------------------- 58 (275)
|+.|.++++||.++|+++|++++.+..+|++++++|+. ++.|+|+|.|||||||++|
T Consensus 20 s~~e~~~~~~l~~~l~~~G~~~~~~~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i 99 (477)
T TIGR01893 20 SKNEKEVSNFIVNWAKKLGLEVKQDEVGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWL 99 (477)
T ss_pred CccHHHHHHHHHHHHHHcCCeEEEeCCCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEE
Confidence 67899999999999999999999998999999997642 2358999999999999754
Q ss_pred ----c---cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccc-ccccccccCCCCCc
Q 023912 59 ----I---FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSALRVSDKSGVT 130 (275)
Q Consensus 59 ----~---~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~-~~~~~~~~d~~g~~ 130 (275)
+ .|||+|++++|++++. .+ .++++|.++|++|||. ++.||+.+.... ..+.+...|..+
T Consensus 100 ~GrG~~lg~D~k~gva~~l~~~~~---~~---~~~~~i~~~~~~dEE~-----g~~Gs~~l~~~~~~~~~~~~~d~~~-- 166 (477)
T TIGR01893 100 KARGTTLGADNGIGVAMGLAILED---NN---LKHPPLELLFTVDEET-----GMDGALGLDENWLSGKILINIDSEE-- 166 (477)
T ss_pred EECCccccccccHHHHHHHHHHhc---CC---CCCCCEEEEEEecccc-----CchhhhhcChhhcCCcEEEEecCCC--
Confidence 2 3999999988888764 33 3567999999999996 567999887532 222221222100
Q ss_pred HHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEc-CCCCCCCCCCCCC
Q 023912 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG-SQGHAGTVPMSMR 209 (275)
Q Consensus 131 ~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G-~~~Hag~~P~~~~ 209 (275)
.+ ..+++++.. ..+..++++|++| .++|..||+|+++| +++|||++|+.+|
T Consensus 167 -------~~----~~~~g~~~~--~~~~~~~e~~~e~---------------~~kG~~~~~i~~~G~~~~Hsg~~p~~~r 218 (477)
T TIGR01893 167 -------EG----EFIVGCAGG--RNVDITFPVKYEK---------------FTKNEEGYQISLKGLKGGHSGADIHKGR 218 (477)
T ss_pred -------CC----eEEEECCCC--eeEEEEEEEEEEe---------------cCCCceEEEEEEeCcCCCcCccccCCCC
Confidence 00 012233211 1356788888875 13799999999999 9999998899877
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 210 QDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 210 ~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.||+.+|+++|.++++.. .++++.+.| |++.|+||++|+
T Consensus 219 ~nAi~~aa~~i~~l~~~~-------------------------~~~v~~~~g-g~~~N~ip~~~~ 257 (477)
T TIGR01893 219 ANANKLMARVLNELKENL-------------------------NFRLSDIKG-GSKRNAIPREAK 257 (477)
T ss_pred cCHHHHHHHHHHhhhhcC-------------------------CeEEEEEeC-CCcccccCCceE
Confidence 899999999999887521 157899998 699999999986
No 25
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=6.7e-29 Score=231.87 Aligned_cols=207 Identities=22% Similarity=0.258 Sum_probs=153.1
Q ss_pred CHHH-HHHHHHHHHHHHHcCCeEEEe-----CcccEEEEecCCCCCCCEEEEeccccccCCC------------------
Q 023912 2 SPAS-VRAGNLIRQWMEDAGLRTWVD-----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------ 57 (275)
Q Consensus 2 S~~E-~~~~~~i~~~l~~~G~~v~~d-----~~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------ 57 (275)
|++| .++++||.++|+++|+++++. ..+||++++++. ..|+|+|.|||||||++
T Consensus 20 s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i 97 (385)
T PRK07522 20 SRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRL 97 (385)
T ss_pred CCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCCCCCCCCCCCceEEECCEE
Confidence 4455 599999999999999998652 236999999654 25899999999999852
Q ss_pred ---CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHH
Q 023912 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (275)
Q Consensus 58 ---G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~ 134 (275)
|++|||++++++|.+++.|++.+ ++++|.|+|++|||. ++.|++.+....
T Consensus 98 ~GrG~~D~Kg~~a~~l~a~~~l~~~~----~~~~i~~~~~~dEE~-----g~~G~~~l~~~~------------------ 150 (385)
T PRK07522 98 YGRGTCDMKGFIAAALAAVPELAAAP----LRRPLHLAFSYDEEV-----GCLGVPSMIARL------------------ 150 (385)
T ss_pred EeccccccchHHHHHHHHHHHHHhCC----CCCCEEEEEEecccc-----CCccHHHHHHHh------------------
Confidence 78899999999999999998763 578999999999995 346888887421
Q ss_pred HHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHH
Q 023912 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (275)
Q Consensus 135 l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~ 214 (275)
...+..++.++++| +.+ ..++.+++|..|++|+++|+++|+| .|.. ++||+.
T Consensus 151 -~~~~~~~d~~i~~e-----------------------p~~--~~~~~~~~G~~~~~i~v~G~~~Hs~-~p~~-g~nAi~ 202 (385)
T PRK07522 151 -PERGVKPAGCIVGE-----------------------PTS--MRPVVGHKGKAAYRCTVRGRAAHSS-LAPQ-GVNAIE 202 (385)
T ss_pred -hhcCCCCCEEEEcc-----------------------CCC--CeeeeeecceEEEEEEEEeeccccC-CCcc-CcCHHH
Confidence 11122112121222 222 3477789999999999999999997 6765 489999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCC-CCeEEEEEEEEecCCcceeecCcee
Q 023912 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLS-SSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.|+++|..|+++..+.....+. ...+. +.+++|++.|++ |.+.|+||++|+
T Consensus 203 ~~~~~i~~l~~~~~~~~~~~~~--------~~~~~~~~~t~~i~~i~g-G~~~nviP~~a~ 254 (385)
T PRK07522 203 YAARLIAHLRDLADRLAAPGPF--------DALFDPPYSTLQTGTIQG-GTALNIVPAECE 254 (385)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--------CcCCCCCcceeEEeeeec-CccccccCCceE
Confidence 9999999999875331000000 00111 247899999998 689999999996
No 26
>PRK07906 hypothetical protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=233.89 Aligned_cols=228 Identities=19% Similarity=0.219 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeC----cccEEEEecCCCCCCCEEEEeccccccCCC---------------------
Q 023912 3 PASVRAGNLIRQWMEDAGLRTWVDH----LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~----~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------- 57 (275)
++|.++++||.++|+++|++++.+. .+|++++++|++++.++|+|.+||||||.+
T Consensus 22 ~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGr 101 (426)
T PRK07906 22 KGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGR 101 (426)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEec
Confidence 6899999999999999999987653 469999998765445899999999999962
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHh
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~ 137 (275)
|+.|||++++++|+++++|++.+. .++++|.|+|++|||.+ +..|++.+...... . ++
T Consensus 102 G~~D~Kg~~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g----~~~g~~~l~~~~~~-~--------------~~- 159 (426)
T PRK07906 102 GAVDMKDMDAMMLAVVRHLARTGR--RPPRDLVFAFVADEEAG----GTYGAHWLVDNHPE-L--------------FE- 159 (426)
T ss_pred CccccchHHHHHHHHHHHHHHcCC--CCCccEEEEEecCcccc----hhhhHHHHHHHHHH-h--------------cc-
Confidence 778999999999999999999887 78999999999999962 34688877642110 0 00
Q ss_pred CCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHH
Q 023912 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (275)
Q Consensus 138 ~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa 217 (275)
+. ..+++|+. . +..++. ++ .....++.+++|..|++|+++|+++|++ .|. . .|||..|+
T Consensus 160 -~~---~~ii~e~~----~----~~~~~~-----~~-~~~~~i~~~~kG~~~~~v~v~G~~~Hss-~p~-~-~nAi~~~~ 218 (426)
T PRK07906 160 -GV---TEAISEVG----G----FSLTVP-----GR-DRLYLIETAEKGLAWMRLTARGRAGHGS-MVN-D-DNAVTRLA 218 (426)
T ss_pred -ch---heEEECCC----c----eeeccC-----CC-ccEEEEEeccceEEEEEEEEEeCCCCCC-CCC-C-CCHHHHHH
Confidence 00 01122210 0 001110 00 0123477889999999999999999996 785 3 89999999
Q ss_pred HHHHHHHHHhcCCC-------------CCcccCCCCCC-----------cccccCCCCeEEEEEEEEecCCcceeecCce
Q 023912 218 ELIVLLERLCKHPK-------------DFLSYDGRSNC-----------STLESLSSSLVCTVGEISSWPSASNVIPGEI 273 (275)
Q Consensus 218 ~~i~~l~~~~~~~~-------------~~~~~~~~~~~-----------~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~ 273 (275)
++|.+|++...+.. ...+.+..... .++......+++|++.|++ |.+.|+||++|
T Consensus 219 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~g-G~~~NviP~~~ 297 (426)
T PRK07906 219 EAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKA-GYKVNVIPGTA 297 (426)
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEec-cCccccCCCce
Confidence 99999986422100 00000000000 0000000146999999999 58999999998
Q ss_pred e
Q 023912 274 L 274 (275)
Q Consensus 274 ~ 274 (275)
+
T Consensus 298 ~ 298 (426)
T PRK07906 298 E 298 (426)
T ss_pred E
Confidence 6
No 27
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.96 E-value=1.5e-28 Score=230.67 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCe-EEEeCcccEEEEecCCCCCCCEEEEeccccccCCC----------------------C
Q 023912 2 SPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA----------------------G 58 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~-v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~----------------------G 58 (275)
|++|.++++||.++|+++|++ +..+..+|+++++ |.. .|+|+|.+||||||++ |
T Consensus 29 s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~-g~~--~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG 105 (395)
T TIGR03320 29 SGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYI-GHG--PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRG 105 (395)
T ss_pred CCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEe-CCC--CcEEEEEecccccCCCCccccccCCCceEEECCEEEecC
Confidence 678999999999999999997 4566678999998 432 4789999999999963 7
Q ss_pred ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhC
Q 023912 59 IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALREN 138 (275)
Q Consensus 59 ~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~ 138 (275)
++|||++++++|.|++.|++.+. .++.+|.|++++|||.. +..+++.+.. +.
T Consensus 106 ~~D~Kg~~aa~l~A~~~l~~~g~--~~~~~i~~~~~~dEE~~----~g~~~~~~~~----------------------~~ 157 (395)
T TIGR03320 106 ASDQEGGIASMVYAGKIIKDLGL--LDDYTLLVTGTVQEEDC----DGLCWQYIIE----------------------ED 157 (395)
T ss_pred ccCccchHHHHHHHHHHHHHcCC--CCCceEEEEeccccccc----CchHHHHHHH----------------------hc
Confidence 88999999999999999999886 67789999999999952 1122233321 11
Q ss_pred CCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHH
Q 023912 139 SIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAE 218 (275)
Q Consensus 139 g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~ 218 (275)
++.+|..+++ |++ ...++.+++|..+++|+++|+++|+| .|+. +.|||.++++
T Consensus 158 ~~~~d~~iv~-----------------------ep~--~~~i~~g~~G~~~~~v~~~G~~~Hss-~p~~-g~nAi~~~~~ 210 (395)
T TIGR03320 158 GIKPEFVVIT-----------------------EPT--DMNIYRGQRGRMEIKVTVKGVSCHGS-APER-GDNAIYKMAP 210 (395)
T ss_pred CCCCCEEEEc-----------------------CCC--ccceEEecceEEEEEEEEeeeccccC-CCCC-CCCHHHHHHH
Confidence 2222211122 221 23477789999999999999999997 7987 5999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 219 LIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 219 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++.+|+++..... .+++.+..++|+|.|++++.+.|+||++|+
T Consensus 211 ~l~~l~~~~~~~~-------------~~~~~~~~t~~v~~i~~g~~~~NviP~~~~ 253 (395)
T TIGR03320 211 ILKELSQLNANLV-------------EDPFLGKGTLTVSEIFFSSPSRCAVADGCT 253 (395)
T ss_pred HHHHHHHHHHhhc-------------CCcccCcCceeeeeeecCCCCcCccCCEEE
Confidence 9999998754310 112224579999999985458999999986
No 28
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=233.07 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeC------------cccEEEEecCCCCCCCEEEEeccccccCCC--------------
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVDH------------LGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~------------~~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------- 57 (275)
+|.++++||+++|+++|++++... ..|++++++|..+ .|+|+|.+||||||.+
T Consensus 35 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~d 113 (427)
T PRK13013 35 AYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD-GDCVHFNSHHDVVEVGHGWTRDPFGGEVKD 113 (427)
T ss_pred cHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC-CCEEEEEeccccCCCCCCCcCCCCCceEEC
Confidence 568999999999999999986542 2499999987543 5899999999999963
Q ss_pred ------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcH
Q 023912 58 ------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTV 131 (275)
Q Consensus 58 ------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~ 131 (275)
|++|||++++++|+|++.|++.+. .++++|.|+|++|||.+ +..|.+.+..
T Consensus 114 g~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~g----~~~g~~~l~~----------------- 170 (427)
T PRK13013 114 GRIYGRGACDMKGGLAASIIAAEAFLAVYP--DFAGSIEISGTADEESG----GFGGVAYLAE----------------- 170 (427)
T ss_pred CEEEeccccccchHHHHHHHHHHHHHHhCC--CCCccEEEEEEeccccC----ChhHHHHHHh-----------------
Confidence 789999999999999999999876 77899999999999952 2224444432
Q ss_pred HHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCC
Q 023912 132 LDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD 211 (275)
Q Consensus 132 ~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~d 211 (275)
.+.. .+.+.++.+ +.++.+. ..++.+++|..+++|+++|+++|++ .|+. ++|
T Consensus 171 ------~~~~-----------~~~~~d~~i--------~~ep~~~-~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~-g~n 222 (427)
T PRK13013 171 ------QGRF-----------SPDRVQHVI--------IPEPLNK-DRICLGHRGVWWAEVETRGRIAHGS-MPFL-GDS 222 (427)
T ss_pred ------cCCc-----------cccCCCEEE--------EecCCCC-CceEEeeeeEEEEEEEEEccccccC-CCCc-CcC
Confidence 1110 000112221 1122221 2466789999999999999999986 8987 499
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccc-cCCCCeEEEEEEEEecCCcc----------eeecCcee
Q 023912 212 PMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLE-SLSSSLVCTVGEISSWPSAS----------NVIPGEIL 274 (275)
Q Consensus 212 Ai~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~tvg~i~ggg~~~----------NvIP~~~~ 274 (275)
||..|+++|.+|+++..+... . .+.. .... .....+++||+.|++ |... |+||++|+
T Consensus 223 ai~~~~~~l~~l~~~~~~~~~---~-~~~~-~~~~~~~~~~~t~~v~~i~g-G~~~~~~~~~~~~~n~IPd~a~ 290 (427)
T PRK13013 223 AIRHMGAVLAEIEERLFPLLA---T-RRTA-MPVVPEGARQSTLNINSIHG-GEPEQDPDYTGLPAPCVADRCR 290 (427)
T ss_pred HHHHHHHHHHHHHHHhhhhhh---c-cccc-CCCCCcccCCCceeeeEEeC-CCccccccccccccccCCceEE
Confidence 999999999999875421100 0 0000 0000 001357899999999 4666 99999996
No 29
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.96 E-value=2.8e-28 Score=229.02 Aligned_cols=203 Identities=24% Similarity=0.245 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCe-EEEeCcccEEEEecCCCCCCCEEEEeccccccCCC----------------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~-v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------------- 57 (275)
.|++|.++++||.++|+++|++ +..+..+|+++.+ |.. .++|+|.+||||||++
T Consensus 28 ~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~-g~~--~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGr 104 (395)
T TIGR03526 28 ESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYI-GHG--PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGR 104 (395)
T ss_pred CCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEe-CCC--CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEec
Confidence 3678999999999999999998 4566678999988 432 3789999999999963
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHh
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~ 137 (275)
|++|||++++++|.|++.|++.+. .++.++.|+++++||.. +..|++.+.. +
T Consensus 105 G~~D~Kg~~aa~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~~----~g~~~~~~~~----------------------~ 156 (395)
T TIGR03526 105 GASDQEGGIASMVYAGKIIKDLGL--LDDYTLLVTGTVQEEDC----DGLCWQYIIE----------------------E 156 (395)
T ss_pred CccccchhHHHHHHHHHHHHHcCC--CCCceEEEEEecccccC----CcHhHHHHHh----------------------c
Confidence 788999999999999999999886 67789999999999941 1234444431 1
Q ss_pred CCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHH
Q 023912 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (275)
Q Consensus 138 ~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa 217 (275)
.++.++..+++ |++ ...++.+++|..+++|+++|+++|++ .|+. +.|||.+|+
T Consensus 157 ~~~~~d~~i~~-----------------------ep~--~~~i~~g~~G~~~~~v~v~G~~~Hs~-~p~~-g~nAi~~~~ 209 (395)
T TIGR03526 157 DKIKPEFVVIT-----------------------EPT--DMNIYRGQRGRMEIKVTVKGVSCHGS-APER-GDNAIYKMA 209 (395)
T ss_pred cCCCCCEEEec-----------------------CCC--CceEEEEcceEEEEEEEEecCCCccC-CCCC-CCCHHHHHH
Confidence 12221111111 222 23467789999999999999999996 7986 599999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+++.+|+++..... .+++.+..++|||.|++|+.+.|+||++|+
T Consensus 210 ~~i~~l~~~~~~~~-------------~~~~~~~~~~~v~~i~~g~~~~nviP~~~~ 253 (395)
T TIGR03526 210 PILKELSQLNANLV-------------EDPFLGKGTLTVSEIFFSSPSRCAVADGCT 253 (395)
T ss_pred HHHHHHHHhhhhhc-------------CCcccCccceeeeeeecCCCCCCccCCeEE
Confidence 99999998754310 112224579999999985448999999986
No 30
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.96 E-value=1.8e-28 Score=226.44 Aligned_cols=185 Identities=20% Similarity=0.231 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCC-------------CCccCChHHHHH
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD-------------AGIFDGSLGIIT 68 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~-------------~G~~D~~~gvaa 68 (275)
|++|.++++||.++|+++|++++.++.+|++. .| .+.|+|.||+||||. .|++|||+|+++
T Consensus 26 s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~--~g----~~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa 99 (346)
T PRK00466 26 SGNETNATKFFEKISNELNLKLEILPDSNSFI--LG----EGDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLIS 99 (346)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEecCCCcEe--cC----CCeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHH
Confidence 57899999999999999999999888889764 33 267999999999997 389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhh
Q 023912 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLL 148 (275)
Q Consensus 69 ~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~ 148 (275)
+|.|++.|++.+. ++.|+|++|||. ++.|++.+... +..+|..+++
T Consensus 100 ~l~a~~~l~~~~~------~i~~~~~~dEE~-----g~~G~~~l~~~-----------------------~~~~d~~i~~ 145 (346)
T PRK00466 100 MIIAAWLLNEKGI------KVMVSGLADEES-----TSIGAKELVSK-----------------------GFNFKHIIVG 145 (346)
T ss_pred HHHHHHHHHHcCC------CEEEEEEcCccc-----CCccHHHHHhc-----------------------CCCCCEEEEc
Confidence 9999999987653 489999999996 34588777631 1111111222
Q ss_pred hhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 023912 149 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCK 228 (275)
Q Consensus 149 e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~ 228 (275)
|+++ ...++.+++|..|++|+++|+++|+| .|. .|||.+|++++.+|++...
T Consensus 146 -----------------------ep~~-~~~i~~~~kG~~~~~i~v~G~~~Has-~p~---~nAi~~~~~~l~~l~~~~~ 197 (346)
T PRK00466 146 -----------------------EPSN-GTDIVVEYRGSIQLDIMCEGTPEHSS-SAK---SNLIVDISKKIIEVYKQPE 197 (346)
T ss_pred -----------------------CCCC-CCceEEEeeEEEEEEEEEEeeccccC-CCC---cCHHHHHHHHHHHHHhccc
Confidence 2222 13577889999999999999999997 673 5999999999999876432
Q ss_pred CCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 229 HPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
. + ..+++|+|.|++ |+..|+||++|+
T Consensus 198 ~------------------~-~~~t~~~~~i~g-G~~~NvvP~~a~ 223 (346)
T PRK00466 198 N------------------Y-DKPSIVPTIIRA-GESYNVTPAKLY 223 (346)
T ss_pred c------------------C-CCCcceeeEEec-CCcCcccCCceE
Confidence 1 2 356899999999 589999999986
No 31
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.96 E-value=4e-28 Score=224.74 Aligned_cols=201 Identities=23% Similarity=0.216 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeC------cccEEEEecCCCCCCCEEEEeccccccCCC--------------------
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVDH------LGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~------~~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------------- 57 (275)
+|.++++||.++|+++|++++.+. .+|+++++.++ +.++|+|.|||||||.+
T Consensus 16 ~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~G 93 (364)
T TIGR01892 16 PNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYG 93 (364)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEe
Confidence 347999999999999999987643 46999999653 24799999999999863
Q ss_pred -CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHH
Q 023912 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALR 136 (275)
Q Consensus 58 -G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~ 136 (275)
|+.|||++++++|.++++|++.+ ++++|.|+|++|||. ++.|++.++....
T Consensus 94 rG~~D~Kg~~a~~l~a~~~l~~~~----~~~~v~~~~~~~EE~-----g~~G~~~~~~~~~------------------- 145 (364)
T TIGR01892 94 RGTCDMKGFLACALAAAPDLAAEQ----LKKPLHLALTADEEV-----GCTGAPKMIEAGA------------------- 145 (364)
T ss_pred cCccccchHHHHHHHHHHHHHhcC----cCCCEEEEEEecccc-----CCcCHHHHHHhcC-------------------
Confidence 78899999999999999998763 578999999999995 3468888763210
Q ss_pred hCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHH
Q 023912 137 ENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAA 216 (275)
Q Consensus 137 ~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~a 216 (275)
+.+|..+++ ++.+ ..++.+++|..+++|+++|+++|++ .|+. +.|||..+
T Consensus 146 ---~~~d~~i~~-----------------------ep~~--~~~~~~~~G~~~~~v~v~G~~~Hs~-~p~~-g~nAi~~~ 195 (364)
T TIGR01892 146 ---GRPRHAIIG-----------------------EPTR--LIPVRAHKGYASAEVTVRGRSGHSS-YPDS-GVNAIFRA 195 (364)
T ss_pred ---CCCCEEEEC-----------------------CCCC--ceeEEeeceEEEEEEEEEccccccc-CCcc-CcCHHHHH
Confidence 111111111 1122 2345678999999999999999997 8987 49999999
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCcccccC-CCCeEEEEEEEEecCCcceeecCcee
Q 023912 217 AELIVLLERLCKHPKDFLSYDGRSNCSTLESL-SSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 217 a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++++.+|+++....... . . .+++ ...+++|++.|++ |.+.|+||++|+
T Consensus 196 ~~~i~~l~~~~~~~~~~--~---~----~~~~~~~~~~~~i~~i~g-g~~~nviP~~~~ 244 (364)
T TIGR01892 196 GRFLQRLVHLADTLLRE--D---L----DEGFTPPYTTLNIGVIQG-GKAVNIIPGACE 244 (364)
T ss_pred HHHHHHHHHHHHHhccC--C---C----CccCCCCCceEEEeeeec-CCCCcccCCeEE
Confidence 99999999875321000 0 0 0011 1357999999999 589999999986
No 32
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.96 E-value=4.1e-28 Score=226.46 Aligned_cols=205 Identities=21% Similarity=0.199 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHHHHcCC---eEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC---------------------
Q 023912 2 SPASVRAGNLIRQWMEDAGL---RTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~---~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------- 57 (275)
|++|.++++||.++|+++|+ ++... ..||++++.+. + +++|+|.|||||||.+
T Consensus 12 s~~e~~~~~~i~~~l~~~g~~~~~~~~~-~~nvva~~~~~-~-~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~ 88 (373)
T TIGR01900 12 SDHEGPIADEIEAALNNLELEGLEVFRF-GDNVLARTDFG-K-ASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAH 88 (373)
T ss_pred CchHHHHHHHHHHHHhhccccCceEEEE-CCEEEEecCCC-C-CCeEEEeCccccccCCCCChhhhccCccccccccccc
Confidence 67899999999999999965 34332 23999998542 2 5789999999999741
Q ss_pred -----------CccCChHHHHHHHHHHHHHHH--cCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccccccc
Q 023912 58 -----------GIFDGSLGIITAISALKVLKS--TGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVS 124 (275)
Q Consensus 58 -----------G~~D~~~gvaa~l~a~~~L~~--~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~ 124 (275)
|+.|||+|++++|.|++.|++ .+. .++++|.|+|++|||... +..|++.++....
T Consensus 89 ~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~--~~~~~i~~~~~~dEE~~~---~~~G~~~~~~~~~------- 156 (373)
T TIGR01900 89 AHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET--ELKHDLTLIAYDCEEVAA---EKNGLGHIRDAHP------- 156 (373)
T ss_pred ccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc--CCCCCEEEEEEecccccC---CCCCHHHHHHhCc-------
Confidence 667999999999999999964 344 578899999999999620 1236666653110
Q ss_pred CCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCC
Q 023912 125 DKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTV 204 (275)
Q Consensus 125 d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~ 204 (275)
.-..++.++++| ++ ...++.+++|..|++|+++|+++|++ .
T Consensus 157 -------------~~~~~d~~iv~E-----------------------pt--~~~i~~g~~G~~~~~i~v~G~~~H~s-~ 197 (373)
T TIGR01900 157 -------------DWLAADFAIIGE-----------------------PT--GGGIEAGCNGNIRFDVTAHGVAAHSA-R 197 (373)
T ss_pred -------------ccccCCEEEEEC-----------------------CC--CCcccccceeeEEEEEEEEeeccccC-C
Confidence 000111122222 22 23467789999999999999999997 8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 205 PMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 205 P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
|+. +.|||..|+++|.+|+++...... .+......++||+.|++ |.+.|+||++|+
T Consensus 198 p~~-g~NAi~~~~~~i~~l~~l~~~~~~------------~~~~~~~~t~~v~~I~G-G~~~nvVP~~a~ 253 (373)
T TIGR01900 198 AWL-GDNAIHKAADIINKLAAYEAAEVN------------IDGLDYREGLNATFCEG-GKANNVIPDEAR 253 (373)
T ss_pred CCC-CCCHHHHHHHHHHHHHHhhccccc------------ccCCcccceEEEEEEeC-CCCCcccCCeEE
Confidence 987 599999999999999986532100 11111247899999999 589999999996
No 33
>PRK09133 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-27 Score=228.63 Aligned_cols=223 Identities=21% Similarity=0.242 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEE---Ee----CcccEEEEecCCCCCCCEEEEeccccccCCC------------------
Q 023912 3 PASVRAGNLIRQWMEDAGLRTW---VD----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------ 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~---~d----~~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------ 57 (275)
++|.++++||.++|+++|++++ .+ ..+||+++++|+++ .++|+|.+||||||.+
T Consensus 56 ~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~i 134 (472)
T PRK09133 56 GSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYF 134 (472)
T ss_pred cchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeecccCCCChhcCCCCCCcceEeCCEE
Confidence 5688999999999999999753 22 24799999987654 4899999999999963
Q ss_pred ---CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHH
Q 023912 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (275)
Q Consensus 58 ---G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~ 134 (275)
|+.|||++++++|+++++|++.+. .++++|.|+|++|||.. ++.|++.+.....
T Consensus 135 yGRGa~D~Kg~~aa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~~----g~~G~~~l~~~~~----------------- 191 (472)
T PRK09133 135 YGRGTSDDKADAAIWVATLIRLKREGF--KPKRDIILALTGDEEGT----PMNGVAWLAENHR----------------- 191 (472)
T ss_pred EecCcccchHHHHHHHHHHHHHHhcCC--CCCCCEEEEEECccccC----ccchHHHHHHHHh-----------------
Confidence 788999999999999999999887 78899999999999931 4568887764211
Q ss_pred HHhCCCChhhHhhhhhccCCCceeeEEEEecccCcc-cc--ccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCC
Q 023912 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPV-LE--WVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD 211 (275)
Q Consensus 135 l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~-le--~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~d 211 (275)
..+ ++-+.+. |++.. +. .......++.++||..|++|+++|+++|+| .|+ + .|
T Consensus 192 ---~~~-----------------~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~~~i~v~G~~~Hss-~p~-~-~n 247 (472)
T PRK09133 192 ---DLI-----------------DAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHSS-RPT-K-DN 247 (472)
T ss_pred ---hcc-----------------CeEEEEE-CCCccccCCCCCceEEEeeeecceeEEEEEEEecCCCCCC-CCC-C-CC
Confidence 001 1111222 32210 00 011223466789999999999999999997 785 3 89
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--Ccc-c----------C---------CCCCCc------cccc-C--CCCeEEEEEEEE
Q 023912 212 PMTAAAELIVLLERLCKHPKD--FLS-Y----------D---------GRSNCS------TLES-L--SSSLVCTVGEIS 260 (275)
Q Consensus 212 Ai~~aa~~i~~l~~~~~~~~~--~~~-~----------~---------~~~~~~------~~~~-~--~~~~~~tvg~i~ 260 (275)
||..++++|.+|+++..+... ... + . ....+. ..++ + ...+++|++.|+
T Consensus 248 Ai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~ 327 (472)
T PRK09133 248 AIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLE 327 (472)
T ss_pred hHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEe
Confidence 999999999999875221000 000 0 0 000000 0000 0 135799999999
Q ss_pred ecCCcceeecCcee
Q 023912 261 SWPSASNVIPGEIL 274 (275)
Q Consensus 261 ggg~~~NvIP~~~~ 274 (275)
+ |++.|+||++|+
T Consensus 328 g-G~~~NvVP~~a~ 340 (472)
T PRK09133 328 G-GHAENALPQRAT 340 (472)
T ss_pred c-CCcCccCCCceE
Confidence 9 589999999986
No 34
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=8.2e-28 Score=224.52 Aligned_cols=199 Identities=23% Similarity=0.274 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeC------cccEEEEecCCCCCCCEEEEeccccccCCC---------------------
Q 023912 5 SVRAGNLIRQWMEDAGLRTWVDH------LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (275)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d~------~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------- 57 (275)
+.++++||.++|+++|++++... ..|+++++ |.. .++|+|.|||||||.+
T Consensus 31 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~Gr 107 (383)
T PRK05111 31 NRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGL 107 (383)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEec
Confidence 47899999999999999986543 25899999 433 3589999999999852
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHh
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~ 137 (275)
|++|||++++++|++++.|++.+ ++++|.|+|++|||. ++.|++.++..
T Consensus 108 G~~D~Kg~~a~~l~a~~~l~~~~----~~~~i~~~~~~~EE~-----g~~G~~~~~~~---------------------- 156 (383)
T PRK05111 108 GTADMKGFFAFILEALRDIDLTK----LKKPLYILATADEET-----SMAGARAFAEA---------------------- 156 (383)
T ss_pred ccccccHHHHHHHHHHHHHhhcC----CCCCeEEEEEecccc-----CcccHHHHHhc----------------------
Confidence 78999999999999999998753 568899999999995 34588777631
Q ss_pred CCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHH
Q 023912 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (275)
Q Consensus 138 ~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa 217 (275)
..+..+..+++| ++. ..++.+++|..+++|+++|+++|+| .|+. +.|||..++
T Consensus 157 ~~~~~d~~i~~e-----------------------p~~--~~~~~~~~G~~~~~i~v~G~~~H~~-~p~~-g~nai~~~~ 209 (383)
T PRK05111 157 TAIRPDCAIIGE-----------------------PTS--LKPVRAHKGHMSEAIRITGQSGHSS-DPAL-GVNAIELMH 209 (383)
T ss_pred CCCCCCEEEEcC-----------------------CCC--CceeecccceEEEEEEEEeechhcc-CCcc-CcCHHHHHH
Confidence 011111111222 122 2345678999999999999999996 8987 499999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCCcccccC-CCCeEEEEEEEEecCCcceeecCcee
Q 023912 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESL-SSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+++.+|+++....... + . .+.+ ...+++|++.|++ |.+.|+||++|+
T Consensus 210 ~~i~~l~~~~~~~~~~--~---~----~~~~~~~~~t~~i~~i~g-g~~~NvVP~~~~ 257 (383)
T PRK05111 210 DVIGELLQLRDELQER--Y---H----NPAFTVPYPTLNLGHIHG-GDAPNRICGCCE 257 (383)
T ss_pred HHHHHHHHHHHHHhcc--C---C----CccCCCCCCceeEeeeec-CCcCcccCCceE
Confidence 9999998864221000 0 0 0011 1367899999999 589999999986
No 35
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.95 E-value=5.1e-27 Score=218.04 Aligned_cols=208 Identities=23% Similarity=0.286 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEE--eCcccEEEEecCCCCCCCEEEEeccccccCCCC------------c---cCCh
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWV--DHLGNVHGRVEGLNASAQALLIGSHLDTVVDAG------------I---FDGS 63 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~--d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G------------~---~D~~ 63 (275)
.|++|.++++||.++|+++|++++. ....|+++++++..+ +|+|+|.|||||||.++ . .+.+
T Consensus 14 ~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~ 92 (363)
T TIGR01891 14 LSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKP-GPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHD 92 (363)
T ss_pred CCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCC-CCEEEEEeccCCCCcccccCCCcccCCCCceecCcCH
Confidence 4789999999999999999999875 235689999976433 48999999999999531 1 1224
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChh
Q 023912 64 LGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIA 143 (275)
Q Consensus 64 ~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~ 143 (275)
++++++|++++.|++.+. .++++|.|+|++|||. ..|++.++.. +..
T Consensus 93 ~~~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~------~~G~~~~~~~-----------------------~~~-- 139 (363)
T TIGR01891 93 LHTAILLGTAKLLKKLAD--LLEGTVRLIFQPAEEG------GGGATKMIED-----------------------GVL-- 139 (363)
T ss_pred HHHHHHHHHHHHHHhchh--hCCceEEEEEeecCcC------cchHHHHHHC-----------------------CCC--
Confidence 667888899999988765 6789999999999995 1588777631 110
Q ss_pred hHhhhhhccCCCceeeEEEEecccCccccccCc-ceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 023912 144 EESLLQLKYDPASVWGYIEVHIEQGPVLEWVGF-PLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVL 222 (275)
Q Consensus 144 ~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~-~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~ 222 (275)
.+++..+.+|-+.+. +.+. ......+++|..|++|+++|+++|+ ++|+. ++||+.+|++++.+
T Consensus 140 -----------~~~d~~i~~e~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~G~~~Ha-s~p~~-g~nAi~~~~~~i~~ 203 (363)
T TIGR01891 140 -----------DDVDAILGLHPDPSI---PAGTVGLRPGTIMAAADKFEVTIHGKGAHA-ARPHL-GRDALDAAAQLVVA 203 (363)
T ss_pred -----------CCcCEEEEECCCCCC---CCeEEEECCCcceeecceEEEEEEeecccc-cCccc-ccCHHHHHHHHHHH
Confidence 012233333322110 0000 0112235689999999999999999 58976 58999999999999
Q ss_pred HHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 223 LERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
|+++.... .++. ..+++|+|.|++ |.+.|+||++|+
T Consensus 204 l~~~~~~~--------------~~~~-~~~~~~i~~i~g-G~~~nvvP~~~~ 239 (363)
T TIGR01891 204 LQQIVSRN--------------VDPS-RPAVVTVGIIEA-GGAPNVIPDKAS 239 (363)
T ss_pred HHHHhhcc--------------CCCC-CCcEEEEEEEEc-CCCCcEECCeeE
Confidence 99875331 1112 367899999999 589999999996
No 36
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.95 E-value=3.3e-27 Score=217.28 Aligned_cols=191 Identities=24% Similarity=0.213 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCc---ccEEEEecCCCCCCCEEEEeccccccCCC-------------CccCChH
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHL---GNVHGRVEGLNASAQALLIGSHLDTVVDA-------------GIFDGSL 64 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~---~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------G~~D~~~ 64 (275)
.|++|.++++||.++|+++|++++.+.. .|+++ + .+|+|+|.+||||||.. |++|||+
T Consensus 17 ~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~---~---~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg 90 (347)
T PRK08652 17 PSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV---N---SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKG 90 (347)
T ss_pred CCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc---C---CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhH
Confidence 3788999999999999999999876543 35555 3 24899999999999972 7899999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhh
Q 023912 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (275)
Q Consensus 65 gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~ 144 (275)
|++++|.|++.|++.. ++++|.|+|++|||. +..|++.+.... ..
T Consensus 91 ~~a~~l~a~~~l~~~~----~~~~v~~~~~~dEE~-----g~~G~~~~~~~~------------------------~~-- 135 (347)
T PRK08652 91 GVAAILLALEELGKEF----EDLNVGIAFVSDEEE-----GGRGSALFAERY------------------------RP-- 135 (347)
T ss_pred HHHHHHHHHHHHhhcc----cCCCEEEEEecCccc-----CChhHHHHHHhc------------------------CC--
Confidence 9999999999998653 467999999999995 235777765311 00
Q ss_pred HhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 023912 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (275)
Q Consensus 145 ~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~ 224 (275)
-+.+|.+++ ...++.+++|..+++|+++|+++|++ .|+. +.|||.++++++.+|+
T Consensus 136 ---------------d~~i~~ep~--------~~~i~~~~~g~~~~~i~~~G~~~H~s-~p~~-g~nAi~~~a~~i~~l~ 190 (347)
T PRK08652 136 ---------------KMAIVLEPT--------DLKVAIAHYGNLEAYVEVKGKPSHGA-CPES-GVNAIEKAFEMLEKLK 190 (347)
T ss_pred ---------------CEEEEecCC--------CCceeeecccEEEEEEEEEeeecccC-CCCc-CcCHHHHHHHHHHHHH
Confidence 123444432 12466789999999999999999985 8987 5999999999999999
Q ss_pred HHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++..... ..+ ..+++++.|++ |.+.|+||++|+
T Consensus 191 ~~~~~~~--------------~~~--~~~~~~~~i~g-g~~~nviP~~~~ 223 (347)
T PRK08652 191 ELLKALG--------------KYF--DPHIGIQEIIG-GSPEYSIPALCR 223 (347)
T ss_pred HHHHhhh--------------ccc--CCCCcceeeec-CCCCCccCCcEE
Confidence 8754320 011 13567888998 589999999986
No 37
>PRK13381 peptidase T; Provisional
Probab=99.95 E-value=6e-27 Score=220.56 Aligned_cols=194 Identities=19% Similarity=0.153 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHcCCe-EEEeCcccEEEEecCCCCCCCEEEEeccccccCCC------------------------
Q 023912 3 PASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------------ 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~-v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------------ 57 (275)
..+.++++||.++|+++|++ +..+..+||+++++|++++.|+|+|.||+||||.+
T Consensus 28 ~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~ 107 (404)
T PRK13381 28 PGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQG 107 (404)
T ss_pred hhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccc
Confidence 35789999999999999995 66777889999998765444899999999999854
Q ss_pred -----------------------Cc----cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccch
Q 023912 58 -----------------------GI----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSA 110 (275)
Q Consensus 58 -----------------------G~----~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~ 110 (275)
|+ .|||+|++++|.|++.|++.+ .++++|.|+|++|||. ++.|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~---~~~g~i~~~~~~dEE~-----g~~G~~ 179 (404)
T PRK13381 108 IWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE---VEHGDIVVAFVPDEEI-----GLRGAK 179 (404)
T ss_pred eeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccc-----ccccHH
Confidence 34 899999999999999998875 4688999999999996 345777
Q ss_pred hhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEE
Q 023912 111 ALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190 (275)
Q Consensus 111 ~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~ 190 (275)
.+... ++. .+..+.+|+ + + ...++.+++|..|+
T Consensus 180 ~~~~~-----------------------~~~---------------~d~~~~~~~--~---~----~~~i~~~~~G~~~~ 212 (404)
T PRK13381 180 ALDLA-----------------------RFP---------------VDFAYTIDC--C---E----LGEVVYENFNAASA 212 (404)
T ss_pred HHHHh-----------------------cCC---------------CCEEEEecC--C---C----cceEEEecCcceEE
Confidence 66420 111 122333332 1 1 12467789999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeec
Q 023912 191 KVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIP 270 (275)
Q Consensus 191 ~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP 270 (275)
+|+|+|+++|++..|.. +.|||.+|++++.+|+++..+. .... ...+++++.|++ + |
T Consensus 213 ~v~v~Gk~aHa~~~p~~-g~NAI~~a~~~i~~l~~~~~~~--------------~~~~-~~~~i~v~~i~g-~------p 269 (404)
T PRK13381 213 EITITGVTAHPMSAKGV-LVNPILMANDFISHFPRQETPE--------------HTEG-REGYIWVNDLQG-N------V 269 (404)
T ss_pred EEEEEeEecCCCCCccc-CcCHHHHHHHHHHhCCccCCCC--------------CCCC-cccEEEEEeEEe-C------c
Confidence 99999999998755865 5999999999999998764331 0111 245688888886 2 6
Q ss_pred Ccee
Q 023912 271 GEIL 274 (275)
Q Consensus 271 ~~~~ 274 (275)
++|+
T Consensus 270 ~~~~ 273 (404)
T PRK13381 270 NKAK 273 (404)
T ss_pred ceEE
Confidence 7775
No 38
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=1e-26 Score=214.66 Aligned_cols=202 Identities=21% Similarity=0.176 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC---------------CccCChH
Q 023912 1 MSPASVRAGNLIRQWMEDA-GLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------GIFDGSL 64 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~-G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------G~~D~~~ 64 (275)
.|++|.++++||.++|+++ |+++..+. .|+++++.+. . +++|+|.+||||||++ |+.|||+
T Consensus 22 ~s~~e~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~-~-~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg 98 (352)
T PRK13007 22 VSGDEKALADAVEAALRALPHLEVIRHG-NSVVARTDLG-R-PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKS 98 (352)
T ss_pred CCchHHHHHHHHHHHHHhCcCceEEecC-CeEEEEccCC-C-CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccH
Confidence 3788999999999999996 98876543 5899998432 2 3689999999999963 7789999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhh
Q 023912 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (275)
Q Consensus 65 gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~ 144 (275)
+++++|.+++.|. +++++|.|+|++|||... +..|++.+..... ..+.+
T Consensus 99 ~~a~~l~a~~~l~------~~~~~i~~~~~~~EE~~~---~~~G~~~~~~~~~--------------------~~~~~-- 147 (352)
T PRK13007 99 GLAVMLHLAATLA------EPAHDLTLVFYDCEEVEA---EANGLGRLAREHP--------------------EWLAG-- 147 (352)
T ss_pred HHHHHHHHHHHhh------ccCCCeEEEEEecccccC---CcccHHHHHHhcc--------------------cccCC--
Confidence 9999999999993 467899999999999621 1136655542100 01111
Q ss_pred HhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 023912 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (275)
Q Consensus 145 ~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~ 224 (275)
+..+ . .|+.. ..++.+++|..|++|+++|+++||| .|+. +.||+..++++|.+|+
T Consensus 148 -------------d~~i--~------~ep~~--~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~-g~nAi~~~~~~i~~l~ 202 (352)
T PRK13007 148 -------------DFAI--L------LEPTD--GVIEAGCQGTLRVTVTFHGRRAHSA-RSWL-GENAIHKAAPVLARLA 202 (352)
T ss_pred -------------CEEE--E------ecCCC--CceEeeccceEEEEEEEEecccccC-CCcc-CcCHHHHHHHHHHHHH
Confidence 1111 1 12222 2466789999999999999999997 7876 5999999999999999
Q ss_pred HHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
++..+... .+......++|++.|++ |.+.|+||++|+
T Consensus 203 ~~~~~~~~------------~~~~~~~~~~~~~~i~g-G~~~nviP~~a~ 239 (352)
T PRK13007 203 AYEPREVV------------VDGLTYREGLNAVRISG-GVAGNVIPDECV 239 (352)
T ss_pred Hhcccccc------------cCCCCccceeEeEeEec-CCcCccCCCeEE
Confidence 86543100 00011245899999998 589999999996
No 39
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.95 E-value=4.6e-27 Score=218.80 Aligned_cols=189 Identities=17% Similarity=0.120 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeCc----ccEEEEecCCCCCCCEEEEeccccccCCC--------------------Cc
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVDHL----GNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GI 59 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~----~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------G~ 59 (275)
+|.++++|+.++|+ |++++.+.. .|+++.. | .|+|+|.|||||||.+ |+
T Consensus 28 ~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g----~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa 100 (364)
T PRK08737 28 TTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G----TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGV 100 (364)
T ss_pred CcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C----CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECc
Confidence 47899999999996 998877654 3898863 3 2689999999999962 78
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCC
Q 023912 60 FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENS 139 (275)
Q Consensus 60 ~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g 139 (275)
+|||++++++|.|++. ++++|.|+|++|||.+ +..|++.++.. +
T Consensus 101 ~DmKg~~aa~l~a~~~---------~~~~v~~~~~~dEE~g----~~~g~~~~~~~-----------------------~ 144 (364)
T PRK08737 101 CDIKGAAAALLAAANA---------GDGDAAFLFSSDEEAN----DPRCVAAFLAR-----------------------G 144 (364)
T ss_pred ccchHHHHHHHHHHHc---------cCCCEEEEEEcccccC----chhhHHHHHHh-----------------------C
Confidence 9999999999988752 2468999999999952 12466666521 2
Q ss_pred CChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCC-CCCCCCHHHHHHH
Q 023912 140 IDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVP-MSMRQDPMTAAAE 218 (275)
Q Consensus 140 ~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P-~~~~~dAi~~aa~ 218 (275)
...+.++++| ++. ..++.++||..|++|+++|+++|+| .| +. ++|||.+|++
T Consensus 145 ~~~~~~iv~E-----------------------pt~--~~~~~~~kG~~~~~v~v~Gk~aHas-~p~~~-G~NAI~~~~~ 197 (364)
T PRK08737 145 IPYEAVLVAE-----------------------PTM--SEAVLAHRGISSVLMRFAGRAGHAS-GKQDP-SASALHQAMR 197 (364)
T ss_pred CCCCEEEEcC-----------------------CCC--ceeEEecceeEEEEEEEEeeccccC-CCccc-CCCHHHHHHH
Confidence 2222223333 222 3467899999999999999999997 66 45 5999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 219 LIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 219 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+|.++.+....... +..... ...++|+|.|+| |.+.|+||++|+
T Consensus 198 ~l~~~~~~~~~~~~----------~~~~~~-~~~t~~vg~i~G-G~~~NvVP~~a~ 241 (364)
T PRK08737 198 WGGQALDHVESLAH----------ARFGGL-TGLRFNIGRVEG-GIKANMIAPAAE 241 (364)
T ss_pred HHHHHHHHHHhhhh----------hccCCC-CCCceEEeeEec-CCCCCcCCCceE
Confidence 99887654321100 001111 356999999999 589999999996
No 40
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.95 E-value=9.1e-27 Score=220.58 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEe----CcccEEEEecCCCCC-CCEEEEeccccccCCC--------------------
Q 023912 3 PASVRAGNLIRQWMEDAGLRTWVD----HLGNVHGRVEGLNAS-AQALLIGSHLDTVVDA-------------------- 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d----~~~nvia~~~g~~~~-~~~vll~aH~DtVp~~-------------------- 57 (275)
.+|.++++||+++|+++|++++.+ ..+|++++++|+.+. .|+|+|.+||||||++
T Consensus 33 ~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~ly 112 (421)
T PRK08596 33 RNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLY 112 (421)
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEE
Confidence 478899999999999999998753 347999999875432 3689999999999863
Q ss_pred --CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHH
Q 023912 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDAL 135 (275)
Q Consensus 58 --G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l 135 (275)
|+.|||++++++|.|+++|++.+. .++++|.|+|++|||. +..|++.+...
T Consensus 113 GrG~~D~Kgg~a~~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~-----g~~G~~~~~~~-------------------- 165 (421)
T PRK08596 113 GRGAADMKGGLAGALFAIQLLHEAGI--ELPGDLIFQSVIGEEV-----GEAGTLQCCER-------------------- 165 (421)
T ss_pred eccccccchHHHHHHHHHHHHHHcCC--CCCCcEEEEEEecccc-----CCcCHHHHHhc--------------------
Confidence 778999999999999999999887 7889999999999996 34588777631
Q ss_pred HhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcC----------CCCCCCCC
Q 023912 136 RENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS----------QGHAGTVP 205 (275)
Q Consensus 136 ~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~----------~~Hag~~P 205 (275)
++..+ +.++.|+ ... . +.+++|..+++++++|+ .+|+| .|
T Consensus 166 ---~~~~d-----------------~~i~~ep------~~~--~-~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~-~p 215 (421)
T PRK08596 166 ---GYDAD-----------------FAVVVDT------SDL--H-MQGQGGVITGWITVKSPQTFHDGTRRQMIHAG-GG 215 (421)
T ss_pred ---CCCCC-----------------EEEECCC------CCC--c-cccccceeeEEEEEEeeccccccccccccccc-CC
Confidence 11111 1233332 111 1 35678888778888775 47987 78
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccC-CCCeEEEEEEEEecCCcceeecCcee
Q 023912 206 MSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESL-SSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 206 ~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+. +.|||.+|+++|.+|+++..... +... .+.+ .+..++|++.|+| |...|+||++|+
T Consensus 216 ~~-G~nai~~~~~~i~~l~~~~~~~~-~~~~--------~~~~~~~~~t~~v~~i~g-G~~~nvvP~~~~ 274 (421)
T PRK08596 216 LF-GASAIEKMMKIIQSLQELERHWA-VMKS--------YPGFPPGTNTINPAVIEG-GRHAAFIADECR 274 (421)
T ss_pred cc-CcCHHHHHHHHHHHHHHHHHHHh-hccc--------CccCCCCCcceeeeeeeC-CCCCCccCceEE
Confidence 87 48999999999999998742110 0000 0011 1357899999999 589999999996
No 41
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.95 E-value=7.6e-27 Score=215.81 Aligned_cols=194 Identities=20% Similarity=0.250 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC-------------CccCChHHHHH
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------GIFDGSLGIIT 68 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------G~~D~~~gvaa 68 (275)
|++|.++++|+.++|+++|++++.+..+|+++++++ . .|+|+|.+|+||||.. |+.|||+++++
T Consensus 22 s~~e~~~~~~l~~~l~~~G~~~~~~~~~n~i~~~~~-~--~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa 98 (348)
T PRK04443 22 SGEEAAAAEFLVEFMESHGREAWVDEAGNARGPAGD-G--PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAA 98 (348)
T ss_pred CCChHHHHHHHHHHHHHcCCEEEEcCCCcEEEEcCC-C--CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHH
Confidence 678999999999999999999998888999999843 2 4899999999999852 78999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhh
Q 023912 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLL 148 (275)
Q Consensus 69 ~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~ 148 (275)
+|+|++.| +. +++++|.|+|++|||.+ ..|...+.. + ++.+|..+++
T Consensus 99 ~l~A~~~l---~~--~~~~~i~~~~~~dEE~g-----~~~~~~~l~----------------------~-~~~~d~~iv~ 145 (348)
T PRK04443 99 FAAAAARL---EA--LVRARVSFVGAVEEEAP-----SSGGARLVA----------------------D-RERPDAVIIG 145 (348)
T ss_pred HHHHHHHh---cc--cCCCCEEEEEEcccccC-----ChhHHHHHH----------------------h-ccCCCEEEEe
Confidence 99999998 33 67899999999999962 233332221 1 1122222222
Q ss_pred hhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 023912 149 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCK 228 (275)
Q Consensus 149 e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~ 228 (275)
| +++. ..++.+++|..|++|+++|+++||| .| + .|||..|++++.+|+++..
T Consensus 146 E-----------------------pt~~-~~i~~~~kG~~~~~l~~~G~~~Hss-~~--g-~NAi~~~~~~l~~l~~~~~ 197 (348)
T PRK04443 146 E-----------------------PSGW-DGITLGYKGRLLVTYVATSESFHSA-GP--E-PNAAEDAIEWWLAVEAWFE 197 (348)
T ss_pred C-----------------------CCCc-cceeeecccEEEEEEEEEeCCCccC-CC--C-CCHHHHHHHHHHHHHHHHh
Confidence 2 2221 1366789999999999999999996 66 3 8999999999999988653
Q ss_pred CCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 229 HPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.... .+...+.+++|++.|+. ..|+||++|+
T Consensus 198 ~~~~------------~~~~~~~~~~~i~~i~~---~~n~iP~~~~ 228 (348)
T PRK04443 198 ANDG------------RERVFDQVTPKLVDFDS---SSDGLTVEAE 228 (348)
T ss_pred cCcc------------ccccccccceeeeEEec---CCCCCCceEE
Confidence 1100 01122567889999984 4699999986
No 42
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.95 E-value=2e-26 Score=216.02 Aligned_cols=210 Identities=22% Similarity=0.205 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHcCCe-EEEeC----------cccEEEEecCCCCCCCEEEEeccccccCCC---------------
Q 023912 4 ASVRAGNLIRQWMEDAGLR-TWVDH----------LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~-v~~d~----------~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------- 57 (275)
.|.++++||.++|+++|++ ++... .+|++++++|..+ .++|+|.|||||||++
T Consensus 28 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~-~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~ 106 (400)
T PRK13983 28 GEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDG-KRTLWIISHMDVVPPGDLSLWETDPFKPVVK 106 (400)
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCC-CCeEEEEeeccccCCCCcccccCCCCcceee
Confidence 5899999999999999998 76421 4799999987543 4799999999999963
Q ss_pred -------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCc
Q 023912 58 -------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVT 130 (275)
Q Consensus 58 -------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~ 130 (275)
|++|||+|++++|.+++.|++.+. +++++|.|+|++|||.+ +-.|++.+....+
T Consensus 107 ~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~g----~~~g~~~~~~~~~------------- 167 (400)
T PRK13983 107 DGKIYGRGSEDNGQGIVSSLLALKALMDLGI--RPKYNLGLAFVSDEETG----SKYGIQYLLKKHP------------- 167 (400)
T ss_pred CCEEEecCccCccchHHHHHHHHHHHHHhCC--CCCCcEEEEEEeccccC----CcccHHHHHhhcc-------------
Confidence 578999999999999999999887 78999999999999952 1136666663210
Q ss_pred HHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCC
Q 023912 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQ 210 (275)
Q Consensus 131 ~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~ 210 (275)
+.. .+.+..+-. +.+ ++.+ .-++.+++|..+++|+|+|+++|+| .|+. ++
T Consensus 168 --------~~~-------------~~~d~~i~~--~~~---~~~~--~~i~~~~~G~~~~~v~v~G~~~Hs~-~p~~-g~ 217 (400)
T PRK13983 168 --------ELF-------------KKDDLILVP--DAG---NPDG--SFIEIAEKSILWLKFTVKGKQCHAS-TPEN-GI 217 (400)
T ss_pred --------ccc-------------CCCCEEEEe--cCC---CCCC--ceeEEeecceEEEEEEEEeEccccC-CCCC-CC
Confidence 000 001111111 111 1112 1256788999999999999999997 7987 49
Q ss_pred CHHHHHHHHHHHHHH-HhcCCCCCcccCCCCCCcccccCC-CCeEEEEEEEEecCCcceeecCcee
Q 023912 211 DPMTAAAELIVLLER-LCKHPKDFLSYDGRSNCSTLESLS-SSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 211 dAi~~aa~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
||+..+++++.+|++ +...... . ...+. ...+++++.+.+++.+.|+||++|+
T Consensus 218 nAi~~~~~~i~~l~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~ 272 (400)
T PRK13983 218 NAHRAAADFALELDEALHEKFNA---K--------DPLFDPPYSTFEPTKKEANVDNINTIPGRDV 272 (400)
T ss_pred CHHHHHHHHHHHHHHHHHhhhcc---c--------ccccCCCCcccccceeecCCcCCcccCCeeE
Confidence 999999999999987 4322100 0 00011 2357788999885458999999986
No 43
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.95 E-value=3e-26 Score=215.44 Aligned_cols=214 Identities=20% Similarity=0.162 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEe----CcccEEEEecCCCCCCCEEEEeccccccCCC----------------------
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVD----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d----~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------------- 57 (275)
+|.++++||+++|+++|++++.. ...|++++++|+++..|+|+|.+||||||.+
T Consensus 29 ~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGr 108 (400)
T TIGR01880 29 DYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYAR 108 (400)
T ss_pred cHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEc
Confidence 47899999999999999987532 3458999998764434899999999999952
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHh
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~ 137 (275)
|+.|||++++++|.+++.|++.+. +++++|.|+|++|||.+ +..|++.+.... .+ .
T Consensus 109 G~~D~K~~~aa~l~a~~~l~~~~~--~~~~~v~l~~~~dEE~g----~~~G~~~~~~~~---~~--------------~- 164 (400)
T TIGR01880 109 GAQDMKCVGVQYLEAVRNLKASGF--KFKRTIHISFVPDEEIG----GHDGMEKFAKTD---EF--------------K- 164 (400)
T ss_pred ccccccHHHHHHHHHHHHHHHcCC--CCCceEEEEEeCCcccC----cHhHHHHHHHhh---hc--------------c-
Confidence 678999999999999999999887 78899999999999962 234777766320 00 0
Q ss_pred CCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHH
Q 023912 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (275)
Q Consensus 138 ~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa 217 (275)
.++..|.+ +.|. .++.+ ...++.+++|..+++|+++|+++||+ .|.. .||+..|+
T Consensus 165 ------------------~~~~~~~~--d~g~-~~~~~-~~~i~~~~kG~~~~~l~v~G~~~Hs~-~~~~--~nai~~l~ 219 (400)
T TIGR01880 165 ------------------ALNLGFAL--DEGL-ASPDD-VYRVFYAERVPWWVVVTAPGNPGHGS-KLME--NTAMEKLE 219 (400)
T ss_pred ------------------CCceEEEE--cCCC-ccccc-ccceeEEeeEEEEEEEEEecCCCCCC-CCCC--CCHHHHHH
Confidence 01111111 1111 11111 13467789999999999999999997 5633 79999999
Q ss_pred HHHHHHHHHhcCCCC-CcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 218 ELIVLLERLCKHPKD-FLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 218 ~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+++..|+++...... +.+. .... ....+++|++.|++ |.+.|+||++|+
T Consensus 220 ~~i~~l~~~~~~~~~~~~~~------~~~~-~~~~~t~~v~~i~g-G~~~nvIP~~a~ 269 (400)
T TIGR01880 220 KSVESIRRFRESQFQLLQSN------PDLA-IGDVTSVNLTKLKG-GVQSNVIPSEAE 269 (400)
T ss_pred HHHHHHHHhhHHHHHHHhcC------cccc-ccccceeecceecc-CCcCCcCCCccE
Confidence 999988875311000 0000 0001 11257999999999 589999999986
No 44
>PRK05469 peptidase T; Provisional
Probab=99.94 E-value=8.9e-26 Score=212.87 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHcCCe-EEEeCcccEEEEecCCC-CCCCEEEEeccccccCCC------------------------
Q 023912 4 ASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLN-ASAQALLIGSHLDTVVDA------------------------ 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~-v~~d~~~nvia~~~g~~-~~~~~vll~aH~DtVp~~------------------------ 57 (275)
.|.++++||+++|+++|++ ++.+..+||+++++|+. ++.|+|+|.|||||||..
T Consensus 30 ~~~~~a~~l~~~l~~~G~~~~~~~~~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~ 109 (408)
T PRK05469 30 GQWDLAKLLVEELKELGLQDVTLDENGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGN 109 (408)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEECCCeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCc
Confidence 4799999999999999996 77788889999998752 235999999999999740
Q ss_pred -----------------------Cc----cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccch
Q 023912 58 -----------------------GI----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSA 110 (275)
Q Consensus 58 -----------------------G~----~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~ 110 (275)
|+ .|||+|++++|.|+++|++.+. .++++|.|+|++|||. + .|++
T Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~--~~~g~v~~~f~~dEE~-----g-~Ga~ 181 (408)
T PRK05469 110 EVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE--IKHGDIRVAFTPDEEI-----G-RGAD 181 (408)
T ss_pred eEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC--CCCCCEEEEEeccccc-----C-CCHH
Confidence 44 9999999999999999998865 6789999999999995 2 4776
Q ss_pred hhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEE
Q 023912 111 ALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190 (275)
Q Consensus 111 ~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~ 190 (275)
.+.. +... .-+.+|+..++ .+ .+...++|..+|
T Consensus 182 ~~~~---------------------~~~~-------------------~~~~~~~~~~~----~g---~~~~~~~g~~~~ 214 (408)
T PRK05469 182 KFDV---------------------EKFG-------------------ADFAYTVDGGP----LG---ELEYENFNAASA 214 (408)
T ss_pred Hhhh---------------------hhcC-------------------CcEEEEecCCC----cc---eEEeccCceeEE
Confidence 6541 0000 11224443221 11 244557899999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeec
Q 023912 191 KVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIP 270 (275)
Q Consensus 191 ~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP 270 (275)
+|+|+|+++|+++.|+.+ .|||.+|++++..|+++..+. .... ...++++|.|+++ |
T Consensus 215 ~i~v~Gk~~Ha~~~p~~g-~nAi~~~~~~i~~l~~~~~~~--------------~~~~-~~~~i~~g~i~gg-------p 271 (408)
T PRK05469 215 KITIHGVNVHPGTAKGKM-VNALLLAADFHAMLPADETPE--------------TTEG-YEGFYHLTSIKGT-------V 271 (408)
T ss_pred EEEEeeecCCCCCCcccc-cCHHHHHHHHHHhCCCCCCCC--------------CCCC-ceEEEEEEEEEEc-------c
Confidence 999999999987678874 999999999999888654321 0111 2346788888873 5
Q ss_pred Ccee
Q 023912 271 GEIL 274 (275)
Q Consensus 271 ~~~~ 274 (275)
++|+
T Consensus 272 ~~~~ 275 (408)
T PRK05469 272 EEAE 275 (408)
T ss_pred ceEE
Confidence 6664
No 45
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.94 E-value=7.1e-26 Score=213.47 Aligned_cols=208 Identities=34% Similarity=0.420 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeCcc------cEEEEecCCCCCCCEEEEeccccccCCC-------------------
Q 023912 3 PASVRAGNLIRQWMEDAGLRTWVDHLG------NVHGRVEGLNASAQALLIGSHLDTVVDA------------------- 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~~~------nvia~~~g~~~~~~~vll~aH~DtVp~~------------------- 57 (275)
..+.++++|++++|+++|+.+..+..+ |+++++.+..+ .|+|+|.||+||||++
T Consensus 31 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~l 109 (409)
T COG0624 31 GEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDG-GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKL 109 (409)
T ss_pred ccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCC-CCeEEEeccccccCCCCcccCccCCCccEEECCEE
Confidence 578999999999999999998776554 89999987643 3899999999999985
Q ss_pred ---CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHH
Q 023912 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (275)
Q Consensus 58 ---G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~ 134 (275)
|++|||+++++++.|++.|.+.+. .++++|.++|.+|||. +..|.+.+.....
T Consensus 110 yGRG~~D~KG~~~a~l~A~~~l~~~~~--~~~~~v~~~~~~dEE~-----g~~~~~~~~~~~~----------------- 165 (409)
T COG0624 110 YGRGAADMKGGLAAALYALSALKAAGG--ELPGDVRLLFTADEES-----GGAGGKAYLEEGE----------------- 165 (409)
T ss_pred EecCccccchHHHHHHHHHHHHHHhCC--CCCeEEEEEEEecccc-----CCcchHHHHHhcc-----------------
Confidence 678999999999999999999776 7889999999999996 2245554442110
Q ss_pred HHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCC---
Q 023912 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD--- 211 (275)
Q Consensus 135 l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~d--- 211 (275)
... .....+++|+|| .++..... .++.+++|..|++|+++|+++|+|.+|...+.|
T Consensus 166 -~~~-----------------~~~~d~~i~~E~--~~~~~~~~-~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~ 224 (409)
T COG0624 166 -EAL-----------------GIRPDYEIVGEP--TLESEGGD-IIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIH 224 (409)
T ss_pred -hhh-----------------ccCCCEEEeCCC--CCcccCCC-eEEEcceeEEEEEEEEEeecccccccCCcccccHHH
Confidence 001 134566788887 33333333 344589999999999999999998543334699
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCC-CeEEEEEEEEecCCc-------ceeecCcee
Q 023912 212 -PMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSS-SLVCTVGEISSWPSA-------SNVIPGEIL 274 (275)
Q Consensus 212 -Ai~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tvg~i~ggg~~-------~NvIP~~~~ 274 (275)
|+..+++++..+.++... ... +.+++++.+.++... .|+||++|+
T Consensus 225 ~a~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~ 278 (409)
T COG0624 225 AAIEALAELIEELGDLAGE------------------GFDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAE 278 (409)
T ss_pred HHHHHHHHHHHHhcccccc------------------cccCCccccccccccCCcccccCCccCceecceEE
Confidence 555555555555433322 113 578888888774222 599999986
No 46
>PRK08201 hypothetical protein; Provisional
Probab=99.94 E-value=6.4e-26 Score=216.77 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHcCCe-EEEeC---cccEEEEecCCCCCCCEEEEeccccccCCC---------------------
Q 023912 3 PASVRAGNLIRQWMEDAGLR-TWVDH---LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~-v~~d~---~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------- 57 (275)
.+|.++++||+++|+++|++ ++.+. .+||++++.+.. ..|+|+|.||+||||++
T Consensus 37 ~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyG 115 (456)
T PRK08201 37 EDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAP-GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYA 115 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCC-CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEE
Confidence 35788999999999999996 54432 357999886642 45899999999999953
Q ss_pred -CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHH
Q 023912 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALR 136 (275)
Q Consensus 58 -G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~ 136 (275)
|+.|||+|++++|++++.|++.+. .++++|.|+|++|||. +..|++.++....
T Consensus 116 RG~~DmKgglaa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~------------------- 169 (456)
T PRK08201 116 RGASDDKGQVFMHLKAVEALLKVEG--TLPVNVKFCIEGEEEI-----GSPNLDSFVEEEK------------------- 169 (456)
T ss_pred EecccCcHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccc-----CCccHHHHHHhhH-------------------
Confidence 778999999999999999987665 6778999999999996 2345555542110
Q ss_pred hCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCC--CCCCCCCCCCCCHHH
Q 023912 137 ENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQG--HAGTVPMSMRQDPMT 214 (275)
Q Consensus 137 ~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~--Hag~~P~~~~~dAi~ 214 (275)
..+..+.++++|++. .. .....++.++||..|++|+++|+++ |||. |..++.|||.
T Consensus 170 -~~~~~d~~ii~e~~~------------------~~--~~~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~-~~~~~~nAi~ 227 (456)
T PRK08201 170 -DKLAADVVLISDTTL------------------LG--PGKPAICYGLRGLAALEIDVRGAKGDLHSGL-YGGAVPNALH 227 (456)
T ss_pred -HhccCCEEEEeCCCc------------------CC--CCCEEEEEecCCeEEEEEEEEeCCCCCcccc-ccCcCCCHHH
Confidence 001112222333211 00 0112477899999999999999998 9874 4333479999
Q ss_pred HHHHHHHHHHHH
Q 023912 215 AAAELIVLLERL 226 (275)
Q Consensus 215 ~aa~~i~~l~~~ 226 (275)
.|+++|.+|+++
T Consensus 228 ~~~~~l~~l~~~ 239 (456)
T PRK08201 228 ALVQLLASLHDE 239 (456)
T ss_pred HHHHHHHhcCCC
Confidence 999999999763
No 47
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.94 E-value=7.4e-26 Score=217.59 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCC--CCCCEEEEeccccccCCC----------------------
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLN--ASAQALLIGSHLDTVVDA---------------------- 57 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~--~~~~~vll~aH~DtVp~~---------------------- 57 (275)
|+.|.++++||.++|+++|++++.|..+|++++++++. .+.|.|+|.|||||||++
T Consensus 26 S~~e~~~~~~l~~~~~~~G~~~~~d~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l 105 (485)
T PRK15026 26 SYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWV 105 (485)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEE
Confidence 67889999999999999999999998999999886431 235899999999999863
Q ss_pred ---Cc---cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccc-ccccccccCCCCCc
Q 023912 58 ---GI---FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL-PVSALRVSDKSGVT 130 (275)
Q Consensus 58 ---G~---~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~-~~~~~~~~d~~g~~ 130 (275)
|. .|||.|++++|.++ ++.++ ++++|.++|++|||. ++.||+.+.... ..+.
T Consensus 106 ~g~Gt~lgaD~k~gva~~l~~l---~~~~~---~~~~i~~l~t~dEE~-----G~~ga~~l~~~~~~~~~---------- 164 (485)
T PRK15026 106 KARGTTLGADNGIGMASALAVL---ADENV---VHGPLEVLLTMTEEA-----GMDGAFGLQSNWLQADI---------- 164 (485)
T ss_pred EeCCccccCccHHHHHHHHHHH---HhCCC---CCCCEEEEEEccccc-----CcHhHHHhhhccCCcCE----------
Confidence 34 49999999887765 45554 478999999999995 577888775321 1111
Q ss_pred HHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEee----ecceEEEEEEEc-CCCCCCCCC
Q 023912 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGI----AGQTRLKVTVRG-SQGHAGTVP 205 (275)
Q Consensus 131 ~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~----~G~~~~~i~v~G-~~~Hag~~P 205 (275)
.++.|+. ....+ +--| .|- ..........+ +|..+|+|+|+| +++|||..|
T Consensus 165 --------------~i~~e~~-~~g~l---~~g~--~G~----~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i 220 (485)
T PRK15026 165 --------------LINTDSE-EEGEI---YMGC--AGG----IDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEI 220 (485)
T ss_pred --------------EEEeCCC-CCCeE---EEeC--CCc----ceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHH
Confidence 1111111 00000 0000 000 00000112222 688999999999 999999889
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 206 MSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 206 ~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
+.++.|||..++++|.++. . .++++++.|+| |++.|+||++|+
T Consensus 221 ~~g~~nAi~~la~~l~~~~----~---------------------~~~~~v~~i~G-G~~~NaIp~~a~ 263 (485)
T PRK15026 221 HVGLGNANKLLVRFLAGHA----E---------------------ELDLRLIDFNG-GTLRNAIPREAF 263 (485)
T ss_pred CCCCccHHHHHHHHHHHhH----h---------------------hCCeEEEEEeC-CCccCCCCCCcE
Confidence 9875599999999998843 1 25689999999 699999999986
No 48
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.94 E-value=1.4e-25 Score=206.19 Aligned_cols=189 Identities=22% Similarity=0.228 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC-------------CccCChHHHHH
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------GIFDGSLGIIT 68 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~-------------G~~D~~~gvaa 68 (275)
|++|.++++||+++|+++|+++..+..+|+++.. +. ..|+|+|.|||||||.. |+.|||+++++
T Consensus 13 s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~-~~--~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa 89 (336)
T TIGR01902 13 SGKEANAAKFLEEISKDLGLKLIIDDAGNFILGK-GD--GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIA 89 (336)
T ss_pred CcchHHHHHHHHHHHHHcCCEEEECCCCcEEEEe-CC--CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHH
Confidence 6789999999999999999999777778998876 32 25899999999999843 78999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhh
Q 023912 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLL 148 (275)
Q Consensus 69 ~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~ 148 (275)
+|.+++.|++.+ .+|.|+|++|||. ++.|++.++.... .++++++
T Consensus 90 ~l~a~~~l~~~~------~~i~~~~~~dEE~-----g~~G~~~~~~~~~------------------------~~~~ii~ 134 (336)
T TIGR01902 90 MIFATWLLNEKG------IKVIVSGLVDEES-----SSKGAREVIDKNY------------------------PFYVIVG 134 (336)
T ss_pred HHHHHHHHHhCC------CcEEEEEEeCccc-----CCccHHHHHhhcC------------------------CCEEEEe
Confidence 999999997543 4799999999996 3468887763210 0011122
Q ss_pred hhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 023912 149 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCK 228 (275)
Q Consensus 149 e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~ 228 (275)
|+++. ..+..+++|..|++|+++|+++|++ .|. +|+.++.+++.+|.+...
T Consensus 135 -----------------------ept~~-~~i~~~~kG~~~~~v~~~G~~~Hss-~~~----~ai~~~~~~~~~l~~~~~ 185 (336)
T TIGR01902 135 -----------------------EPSGA-EGITLGYKGSLQLKIMCEGTPFHSS-SAG----NAAELLIDYSKKIIEVYK 185 (336)
T ss_pred -----------------------cCCCC-cceeeeeeeEEEEEEEEEecCcccC-CCh----hHHHHHHHHHHHHHHHhc
Confidence 22221 1366789999999999999999996 552 599999999999974222
Q ss_pred CCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 229 HPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
.. ... +.++++++.+++ |.+.|+||++|+
T Consensus 186 ~~---------------~~~-~~~~~~~~~i~g-g~~~nvIP~~a~ 214 (336)
T TIGR01902 186 QP---------------ENY-DKPSIVPTIIRF-GESYNDTPAKLE 214 (336)
T ss_pred cc---------------cCC-CCCcceeEEEEc-cCCCcCCCceEE
Confidence 11 011 245789999999 589999999986
No 49
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.94 E-value=9.5e-26 Score=211.34 Aligned_cols=202 Identities=22% Similarity=0.249 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeCcc------------cEEEEecCCCCCCCEEEEeccccccCCC-------------
Q 023912 3 PASVRAGNLIRQWMEDAGLRTWVDHLG------------NVHGRVEGLNASAQALLIGSHLDTVVDA------------- 57 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~~~------------nvia~~~g~~~~~~~vll~aH~DtVp~~------------- 57 (275)
.+|.++++||+++|+++|++++.+..+ |+++.. +.+ .|+|+|.+||||||.+
T Consensus 26 ~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ill~~HlDtvp~~~~~~~~~Pf~~~~ 102 (394)
T PRK08651 26 ENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GSG--NPHLHFNGHYDVVPPGEGWSVNVPFEPKV 102 (394)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CCC--CceEEEEeeeeeecCCCCccccCCCCcEE
Confidence 467899999999999999998765322 356664 332 3899999999999963
Q ss_pred --------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCC
Q 023912 58 --------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGV 129 (275)
Q Consensus 58 --------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~ 129 (275)
|..|||+|++++|++++.|++. . +++|.|+|++|||. ++.|++.+....
T Consensus 103 ~~~~~~grG~~D~k~~~~~~l~a~~~l~~~----~-~~~v~~~~~~~EE~-----g~~G~~~~~~~~------------- 159 (394)
T PRK08651 103 KDGKVYGRGASDMKGGIAALLAAFERLDPA----G-DGNIELAIVPDEET-----GGTGTGYLVEEG------------- 159 (394)
T ss_pred ECCEEEecCccccchHHHHHHHHHHHHHhc----C-CCCEEEEEecCccc-----cchhHHHHHhcc-------------
Confidence 5589999999999999999765 3 68999999999996 336888877421
Q ss_pred cHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCC
Q 023912 130 TVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMR 209 (275)
Q Consensus 130 ~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~ 209 (275)
....+..++ .++.+. ..++.+++|..+++|+++|+++|++ .|+. +
T Consensus 160 ---------~~~~d~~i~-----------------------~~~~~~-~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~-g 204 (394)
T PRK08651 160 ---------KVTPDYVIV-----------------------GEPSGL-DNICIGHRGLVWGVVKVYGKQAHAS-TPWL-G 204 (394)
T ss_pred ---------CCCCCEEEE-----------------------ecCCCC-CceEEecccEEEEEEEEEEeccccC-CCcc-c
Confidence 000111111 111221 1467789999999999999999997 7876 4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEE--EEecCCcceeecCcee
Q 023912 210 QDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGE--ISSWPSASNVIPGEIL 274 (275)
Q Consensus 210 ~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~--i~ggg~~~NvIP~~~~ 274 (275)
.|||.+|++++.+|++...+... .+. . .++....+++|+|. |++ |.+.|+||++|+
T Consensus 205 ~nAi~~~~~~i~~l~~~~~~~~~--~~~--~----~~~~~~~~~~~ig~~~i~g-G~~~nviP~~a~ 262 (394)
T PRK08651 205 INAFEAAAKIAERLKSSLSTIKS--KYE--Y----DDERGAKPTVTLGGPTVEG-GTKTNIVPGYCA 262 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhc--ccc--c----cccccCCCceeecceeeeC-CCCCCccCCEEE
Confidence 99999999999999875432100 000 0 01112456889999 998 689999999986
No 50
>PRK08262 hypothetical protein; Provisional
Probab=99.94 E-value=3.1e-25 Score=213.71 Aligned_cols=224 Identities=19% Similarity=0.178 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHcCCeEEEeCc--ccEEEEecCCCCCCCEEEEeccccccCCC------------------------Ccc
Q 023912 7 RAGNLIRQWMEDAGLRTWVDHL--GNVHGRVEGLNASAQALLIGSHLDTVVDA------------------------GIF 60 (275)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d~~--~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------------G~~ 60 (275)
++++||.++|+.+|++++.... .|+++.++|++++.++|+|.|||||||++ |+.
T Consensus 74 ~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~ 153 (486)
T PRK08262 74 ALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGAL 153 (486)
T ss_pred HHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCcc
Confidence 5889999999999987654332 47888887765434899999999999962 678
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCC
Q 023912 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSI 140 (275)
Q Consensus 61 D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~ 140 (275)
|||++++++|.|++.|++.+. .++++|.|+|++|||. ++.|++.+...+ +..+.
T Consensus 154 D~Kg~~aa~L~A~~~l~~~~~--~l~~~I~llf~~dEE~-----g~~G~~~l~~~l-------------------~~~~~ 207 (486)
T PRK08262 154 DDKGSLVAILEAAEALLAQGF--QPRRTIYLAFGHDEEV-----GGLGARAIAELL-------------------KERGV 207 (486)
T ss_pred ccchhHHHHHHHHHHHHHcCC--CCCCeEEEEEeccccc-----CCcCHHHHHHHH-------------------HHhcC
Confidence 999999999999999999887 7889999999999996 335888776432 11111
Q ss_pred ChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHH
Q 023912 141 DIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI 220 (275)
Q Consensus 141 ~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i 220 (275)
..+..+ + -..++..|..++ ..++ ...+..+++|..+++|+++|+++||| .|.. .||+..++++|
T Consensus 208 ~~~~~~------~---~~~~i~~~~~~~-~~~p---~~~i~~~~kG~~~~~i~v~G~~~Hss-~p~~--~nai~~l~~~l 271 (486)
T PRK08262 208 RLAFVL------D---EGGAITEGVLPG-VKKP---VALIGVAEKGYATLELTARATGGHSS-MPPR--QTAIGRLARAL 271 (486)
T ss_pred CEEEEE------e---CCceecccccCC-CCce---EEeeEEeeeeeEEEEEEEecCCCCCC-CCCC--CCHHHHHHHHH
Confidence 110000 0 000111111100 0001 12355678999999999999999996 7864 89999999999
Q ss_pred HHHHHHhcCCCC-------------CcccCCC-------CCC----------cccccCCCCeEEEEEEEEecCCcceeec
Q 023912 221 VLLERLCKHPKD-------------FLSYDGR-------SNC----------STLESLSSSLVCTVGEISSWPSASNVIP 270 (275)
Q Consensus 221 ~~l~~~~~~~~~-------------~~~~~~~-------~~~----------~~~~~~~~~~~~tvg~i~ggg~~~NvIP 270 (275)
.+|++...+... ....+.+ ... ...+.+ ..+++|||.|++ |.+.|+||
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~i~~I~g-G~~~NvIP 349 (486)
T PRK08262 272 TRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAM-LRTTTAPTMLKG-SPKDNVLP 349 (486)
T ss_pred HHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCcccee-EEeeeeeeEEec-CCccccCC
Confidence 999874211000 0000000 000 000011 357999999999 58999999
Q ss_pred Ccee
Q 023912 271 GEIL 274 (275)
Q Consensus 271 ~~~~ 274 (275)
++|+
T Consensus 350 ~~a~ 353 (486)
T PRK08262 350 QRAT 353 (486)
T ss_pred CccE
Confidence 9986
No 51
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.94 E-value=7.3e-26 Score=213.76 Aligned_cols=194 Identities=18% Similarity=0.132 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCe-EEEeC-cccEEEEecCCCC-CCCEEEEeccccccCC-------------CC-------
Q 023912 2 SPASVRAGNLIRQWMEDAGLR-TWVDH-LGNVHGRVEGLNA-SAQALLIGSHLDTVVD-------------AG------- 58 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~-v~~d~-~~nvia~~~g~~~-~~~~vll~aH~DtVp~-------------~G------- 58 (275)
|++| +.++||+++|+++|++ ++.|. .+||+++++|+.. +.|+|+|.+||||||. +|
T Consensus 30 ~~~~-~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~ 108 (410)
T TIGR01882 30 PGQL-TFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLG 108 (410)
T ss_pred HhHH-HHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecC
Confidence 3566 7999999999999997 99998 8999999988542 1399999999999984 11
Q ss_pred -------------------------------ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcc
Q 023912 59 -------------------------------IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFL 107 (275)
Q Consensus 59 -------------------------------~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~ 107 (275)
.+|||+|+|++|++++.|++.+. .++++|.|+|++|||. + .
T Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~--~~~g~I~~~ft~dEE~-----g-~ 180 (410)
T TIGR01882 109 DLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE--IKHGTIRVAFTPDEEI-----G-R 180 (410)
T ss_pred CCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC--CCCCCEEEEEECcccC-----C-c
Confidence 16999999999999999998643 4688999999999995 2 3
Q ss_pred cchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecc
Q 023912 108 GSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQ 187 (275)
Q Consensus 108 Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~ 187 (275)
|++.+.. + ++ ..-+.+|+.. ++.+ .+....+|.
T Consensus 181 Ga~~l~~---------------------~--~~-----------------~~~~~~~i~g----ep~g---~i~~~~~g~ 213 (410)
T TIGR01882 181 GAHKFDV---------------------K--DF-----------------NADFAYTVDG----GPLG---ELEYETFSA 213 (410)
T ss_pred Ccchhhh---------------------h--hc-----------------CccEEEEeCC----CCCC---eEEEccccc
Confidence 7665531 0 00 0112244432 1122 134445689
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcce
Q 023912 188 TRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASN 267 (275)
Q Consensus 188 ~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~N 267 (275)
.+|+|+|+|+++|++..|.. +.|||..+++++..|...... ..++.++|.++++ ..|
T Consensus 214 ~~~~I~v~Gk~aHa~~~~~~-g~nAi~~a~~~~~~l~~~~~~--------------------~~t~~~~g~i~~g--~i~ 270 (410)
T TIGR01882 214 AAAKITIQGNNVHPGTAKGK-MINAAQIAIDLHNLLPEDDRP--------------------EYTEGREGFFHLL--SID 270 (410)
T ss_pred eEEEEEEEEEecCcccChHH-HHHHHHHHHHHHHhcCCcCCC--------------------ccccceeEEEEEE--eEE
Confidence 99999999999999744444 489999998887655432110 1122234667763 578
Q ss_pred eecCcee
Q 023912 268 VIPGEIL 274 (275)
Q Consensus 268 vIP~~~~ 274 (275)
.||++|+
T Consensus 271 giPd~a~ 277 (410)
T TIGR01882 271 GTVEEAK 277 (410)
T ss_pred EecCEEE
Confidence 8999996
No 52
>PRK06446 hypothetical protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=212.47 Aligned_cols=169 Identities=20% Similarity=0.197 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEeC---cccEEEEecCCCCCCCEEEEeccccccCCC----------------------Ccc
Q 023912 6 VRAGNLIRQWMEDAGLRTWVDH---LGNVHGRVEGLNASAQALLIGSHLDTVVDA----------------------GIF 60 (275)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~---~~nvia~~~g~~~~~~~vll~aH~DtVp~~----------------------G~~ 60 (275)
.++++||.++|+++|++++... ..|+++++++. ..|+|+|.|||||||.+ |+.
T Consensus 25 ~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~ 102 (436)
T PRK06446 25 EETANYLKDTMEKLGIKANIERTKGHPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGAS 102 (436)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEecc
Confidence 7999999999999999986543 45799998642 25899999999999852 789
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCC
Q 023912 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSI 140 (275)
Q Consensus 61 D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~ 140 (275)
|||+|++++|.|++.|++.+ .++.+|.|+|++|||. +..|++.+..... ..+
T Consensus 103 DmKgglaa~l~A~~~l~~~~---~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~--------------------~~~ 154 (436)
T PRK06446 103 DNKGTLMARLFAIKHLIDKH---KLNVNVKFLYEGEEEI-----GSPNLEDFIEKNK--------------------NKL 154 (436)
T ss_pred CCcHHHHHHHHHHHHHHHcC---CCCCCEEEEEEccccc-----CCHhHHHHHHHHH--------------------HHh
Confidence 99999999999999887664 4678999999999996 3346665553110 011
Q ss_pred ChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEc--CCCCCCCCCCCCCCCHHHHHHH
Q 023912 141 DIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG--SQGHAGTVPMSMRQDPMTAAAE 218 (275)
Q Consensus 141 ~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G--~~~Hag~~P~~~~~dAi~~aa~ 218 (275)
.. +++ + +|+.. +.+.+ ...++.++||..|++|+++| +++||| .|.. +.|||..|++
T Consensus 155 ~~---------------d~v--i-~E~~~-~~~~~-~~~i~~~~kG~~~~~l~v~G~~~~~Hss-~p~~-g~NAi~~~~~ 212 (436)
T PRK06446 155 KA---------------DSV--I-MEGAG-LDPKG-RPQIVLGVKGLLYVELVLRTGTKDLHSS-NAPI-VRNPAWDLVK 212 (436)
T ss_pred CC---------------CEE--E-ECCCC-ccCCC-CeEEEEecCeEEEEEEEEEeCCCCCCCC-CCcc-CCCHHHHHHH
Confidence 11 111 1 12211 11111 13578899999999999999 999997 6766 4899999999
Q ss_pred HHHHHHHH
Q 023912 219 LIVLLERL 226 (275)
Q Consensus 219 ~i~~l~~~ 226 (275)
+|.+|.+.
T Consensus 213 ~l~~l~~~ 220 (436)
T PRK06446 213 LLSTLVDG 220 (436)
T ss_pred HHHhhCCC
Confidence 99999864
No 53
>PRK09104 hypothetical protein; Validated
Probab=99.93 E-value=4.7e-25 Score=211.29 Aligned_cols=174 Identities=15% Similarity=0.127 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe---CcccEEEEecCCCCCCCEEEEeccccccCCC------------------------
Q 023912 5 SVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------------ 57 (275)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d---~~~nvia~~~g~~~~~~~vll~aH~DtVp~~------------------------ 57 (275)
+.++++||.++|+++|++++.. ...||+++++|+++..|+|+|.||+||||.+
T Consensus 42 ~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~l 121 (464)
T PRK09104 42 CRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVI 121 (464)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceE
Confidence 5789999999999999998643 2458999998754446999999999999852
Q ss_pred ---CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHH
Q 023912 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (275)
Q Consensus 58 ---G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~ 134 (275)
|+.|||++++++|+|++.|++.+. +++++|.|+|.+|||. +..|.+.++...
T Consensus 122 yGRG~~D~Kg~laa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~------------------ 176 (464)
T PRK09104 122 VARGASDDKGQLMTFVEACRAWKAVTG--SLPVRVTILFEGEEES-----GSPSLVPFLEAN------------------ 176 (464)
T ss_pred EEecccCCcHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECcccc-----CCccHHHHHHhh------------------
Confidence 457999999999999999998765 6788999999999996 234555554210
Q ss_pred HHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEc--CCCCCCCCCCCCCCCH
Q 023912 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG--SQGHAGTVPMSMRQDP 212 (275)
Q Consensus 135 l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G--~~~Hag~~P~~~~~dA 212 (275)
.+ .+.++.++++|+.. . .+....++.++||..|++|+++| +++|||..|.. +.||
T Consensus 177 ~~--~~~~d~~iv~E~~~------------------~--~~~~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~-g~na 233 (464)
T PRK09104 177 AE--ELKADVALVCDTGM------------------W--DRETPAITTSLRGLVGEEVTITAADRDLHSGLFGGA-AANP 233 (464)
T ss_pred HH--hcCCCEEEEeCCCC------------------C--CCCCeEEEeecCCeEEEEEEEEeCCCCccccccCCc-cCCH
Confidence 00 01112222222110 0 01123467899999999999999 78999744655 5999
Q ss_pred HHHHHHHHHHHHHH
Q 023912 213 MTAAAELIVLLERL 226 (275)
Q Consensus 213 i~~aa~~i~~l~~~ 226 (275)
+..+++++.+|++.
T Consensus 234 i~~~~~~l~~l~~~ 247 (464)
T PRK09104 234 IRVLTRILAGLHDE 247 (464)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999999763
No 54
>PRK07907 hypothetical protein; Provisional
Probab=99.93 E-value=6.1e-25 Score=209.70 Aligned_cols=168 Identities=23% Similarity=0.269 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHcCC-eEEE---eCcccEEEEecCCCCCCCEEEEeccccccCCC----------------------
Q 023912 4 ASVRAGNLIRQWMEDAGL-RTWV---DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~-~v~~---d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------------- 57 (275)
+|.++++||.++|+++|+ +++. +..+|++++++++. ..|+|+|.||+||||++
T Consensus 42 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGr 120 (449)
T PRK07907 42 EVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGR 120 (449)
T ss_pred hHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEEC
Confidence 478999999999999998 7765 34679999997643 35899999999999973
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHh
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~ 137 (275)
|+.|||+|++++|.|++.| +. +++.+|.|++++|||. +..|++.++.... +
T Consensus 121 G~~D~Kg~~aa~l~a~~~l---~~--~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~---------------~---- 171 (449)
T PRK07907 121 GAADDKGGIAMHLAALRAL---GG--DLPVGVTVFVEGEEEM-----GSPSLERLLAEHP---------------D---- 171 (449)
T ss_pred CccCCcHHHHHHHHHHHHh---cc--CCCCcEEEEEEcCccc-----CCccHHHHHHhch---------------H----
Confidence 7899999999999999999 33 5678999999999996 3357777663210 0
Q ss_pred CCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcc---eeEEEeeecceEEEEEEE--cCCCCCCCCCCCCCCCH
Q 023912 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFP---LGVVQGIAGQTRLKVTVR--GSQGHAGTVPMSMRQDP 212 (275)
Q Consensus 138 ~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~---~gvv~~~~G~~~~~i~v~--G~~~Hag~~P~~~~~dA 212 (275)
.+.+|.+++.|+ .... ..++.++||..|++|+++ |+++|||..+.. +.||
T Consensus 172 -~~~~d~~iv~E~-----------------------~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~-~~nA 226 (449)
T PRK07907 172 -LLAADVIVIADS-----------------------GNWSVGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGA-APDA 226 (449)
T ss_pred -hhcCCEEEEecC-----------------------CcCCCCCeEEEEecCCcEEEEEEEEECCCCCCCcccccc-CCCH
Confidence 011111222221 1111 136678999999999999 999999742333 4899
Q ss_pred HHHHHHHHHHHHHH
Q 023912 213 MTAAAELIVLLERL 226 (275)
Q Consensus 213 i~~aa~~i~~l~~~ 226 (275)
+..++++|.+|++.
T Consensus 227 i~~~~~~l~~l~~~ 240 (449)
T PRK07907 227 LTALVRLLATLHDE 240 (449)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999999864
No 55
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.92 E-value=2.7e-24 Score=196.62 Aligned_cols=212 Identities=22% Similarity=0.222 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHcCCeEEEe----CcccEEEEecCCCCCCCEEEEeccccccCCC----------------------Ccc
Q 023912 7 RAGNLIRQWMEDAGLRTWVD----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA----------------------GIF 60 (275)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d----~~~nvia~~~g~~~~~~~vll~aH~DtVp~~----------------------G~~ 60 (275)
.+++|+.++.+.+|+.+..- ...+++.+|.|++|+.+.|+|.||+|+||+- |+.
T Consensus 49 a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaq 128 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQ 128 (420)
T ss_pred HHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEecccc
Confidence 68999999999999986432 2357899999999999999999999999952 889
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCC
Q 023912 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSI 140 (275)
Q Consensus 61 D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~ 140 (275)
|||+-+++.|+|+|.|+..|. +++|+|.+.|.+|||.+ |..|++.++...+-.. +++ ++
T Consensus 129 D~K~~~va~leAir~L~~~g~--kp~Rti~lsfvpDEEi~----G~~Gm~~fa~~~~~~~------l~~---------~f 187 (420)
T KOG2275|consen 129 DMKCVGVAYLEAIRNLKASGF--KPKRTIHLSFVPDEEIG----GHIGMKEFAKTEEFKK------LNL---------GF 187 (420)
T ss_pred chHhHHHHHHHHHHHHHhcCC--CcCceEEEEecCchhcc----CcchHHHHhhhhhhcc------cce---------eE
Confidence 999999999999999999999 99999999999999974 3567777765211000 000 11
Q ss_pred ChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHH
Q 023912 141 DIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI 220 (275)
Q Consensus 141 ~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i 220 (275)
+++|.- ..+ ..-.-+.+++||..|++|+++|++||+| .|++ ..|+.++.++|
T Consensus 188 -----ilDEG~------------------~se--~d~~~vfyaEkg~w~~~v~~~G~~GHss-~~~~--nTa~~~l~klv 239 (420)
T KOG2275|consen 188 -----ILDEGG------------------ATE--NDFATVFYAEKGPWWLKVTANGTPGHSS-YPPP--NTAIEKLEKLV 239 (420)
T ss_pred -----EecCCC------------------CCc--ccceeEEEEeeceeEEEEEecCCCCCCC-CCCC--ccHHHHHHHHH
Confidence 011110 000 1112356789999999999999999996 7766 69999999999
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEecCCcceeecCcee
Q 023912 221 VLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEIL 274 (275)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~ggg~~~NvIP~~~~ 274 (275)
..+++.......+++.. + .......+++||+.|+| |.+.|++|...+
T Consensus 240 ~~~~~fr~~q~~~l~~~-----p-~~~~~~vtT~Nv~~i~G-Gv~~N~~P~~~e 286 (420)
T KOG2275|consen 240 ESLEEFREKQVDLLASG-----P-KLALGDVTTINVGIING-GVQSNVLPETFE 286 (420)
T ss_pred HHHHHhHHHHHHHhhcC-----C-ceeccceeEEeeeeeec-ccccCcCchhhe
Confidence 99998652211111111 0 11123689999999999 599999998754
No 56
>PRK07079 hypothetical protein; Provisional
Probab=99.91 E-value=2.1e-23 Score=200.15 Aligned_cols=173 Identities=16% Similarity=0.072 Sum_probs=122.0
Q ss_pred HHHHHHHHHH----HHHHHcCCeEEEe------CcccEEEEecCCCCCCCEEEEeccccccCCC----------------
Q 023912 4 ASVRAGNLIR----QWMEDAGLRTWVD------HLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~----~~l~~~G~~v~~d------~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------- 57 (275)
++.++++|+. ++|+++|++++.. ...||++++.+.. +.|+|+|.||+||||.+
T Consensus 38 ~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~-~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~ 116 (469)
T PRK07079 38 RAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDD-ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEE 116 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCC-CCCEEEEEcccCCCCCChHHhcccCCCCccccc
Confidence 3556777764 5899999998642 2358999986543 35899999999999841
Q ss_pred -------CccCChHHHHHHHHHHHHHHHc-CCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCC
Q 023912 58 -------GIFDGSLGIITAISALKVLKST-GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGV 129 (275)
Q Consensus 58 -------G~~D~~~gvaa~l~a~~~L~~~-~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~ 129 (275)
|+.|||++++++|+|++.|.+. +. ++.++|.|+|++|||. ++.|++.++....
T Consensus 117 dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~--~~~~~i~~~~~~dEE~-----g~~G~~~l~~~~~------------ 177 (469)
T PRK07079 117 GDRWYGRGTADNKGQHTINLAALEQVLAARGG--RLGFNVKLLIEMGEEI-----GSPGLAEVCRQHR------------ 177 (469)
T ss_pred CCEEEEEeccCCcHHHHHHHHHHHHHHHhcCC--CCCCCEEEEEECcccc-----CCccHHHHHHHhH------------
Confidence 7789999999999999998653 45 7889999999999996 3468887764210
Q ss_pred cHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEcC--CCCCCCCCCC
Q 023912 130 TVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS--QGHAGTVPMS 207 (275)
Q Consensus 130 ~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G~--~~Hag~~P~~ 207 (275)
..+.+|.++++|+.. .+ .....++.++||..|++|+++|+ +.||+ .+..
T Consensus 178 --------~~~~~d~~iv~e~~~------------------~~--~~~~~i~~g~kG~~~~~v~v~G~~~~~hs~-~~~g 228 (469)
T PRK07079 178 --------EALAADVLIASDGPR------------------LS--AERPTLFLGSRGAVNFRLRVNLRDGAHHSG-NWGG 228 (469)
T ss_pred --------HhcCCCEEEEeCCCc------------------cC--CCCeEEEEecceEEEEEEEEeeCCCCCCCC-cccc
Confidence 011122222322210 00 11134778999999999999998 45765 3211
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 023912 208 MRQDPMTAAAELIVLLER 225 (275)
Q Consensus 208 ~~~dAi~~aa~~i~~l~~ 225 (275)
...||+..++++|.++.+
T Consensus 229 ~~~nai~~l~~ai~~l~~ 246 (469)
T PRK07079 229 LLRNPGTVLAHAIASLVD 246 (469)
T ss_pred ccCCHHHHHHHHHHHhCC
Confidence 126999999999999864
No 57
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.90 E-value=1.1e-22 Score=195.11 Aligned_cols=102 Identities=27% Similarity=0.246 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC--------------------CccCCh
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GIFDGS 63 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------G~~D~~ 63 (275)
++.++++||+++|+++|++++.. .|+++++.... +.++|+|.||+||||.+ |+.|||
T Consensus 44 ~~~~~~~~l~~~~~~~G~~~~~~--~n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmK 120 (466)
T PRK07318 44 GPVKALEKFLEIAERDGFKTKNV--DNYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDK 120 (466)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEe--cCccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCc
Confidence 47789999999999999998753 47777764322 24799999999999963 778999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcc
Q 023912 64 LGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 115 (275)
Q Consensus 64 ~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~ 115 (275)
+|++++++|++.|++.+. .++++|.|+|++|||. ++.|++.++..
T Consensus 121 gg~aa~l~Al~~l~~~g~--~~~~~i~l~~~~DEE~-----g~~G~~~l~~~ 165 (466)
T PRK07318 121 GPTMAAYYALKIIKELGL--PLSKKVRFIVGTDEES-----GWKCMDYYFEH 165 (466)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCccEEEEEEccccc-----CchhHHHHHHh
Confidence 999999999999999887 7788999999999996 45799988754
No 58
>PRK07205 hypothetical protein; Provisional
Probab=99.90 E-value=3.5e-22 Score=190.51 Aligned_cols=99 Identities=22% Similarity=0.268 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCcc-cEEEEecCCCCCCCEEEEeccccccCCC----------------------CccCC
Q 023912 6 VRAGNLIRQWMEDAGLRTWVDHLG-NVHGRVEGLNASAQALLIGSHLDTVVDA----------------------GIFDG 62 (275)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~~~-nvia~~~g~~~~~~~vll~aH~DtVp~~----------------------G~~D~ 62 (275)
.++++|+.++|+++|++++.+..+ ++++++ |+ +.|+|+|.+|+||||++ |+.||
T Consensus 41 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-g~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~Dm 117 (444)
T PRK07205 41 QDVLEATLDLCQGLGFKTYLDPKGYYGYAEI-GQ--GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDD 117 (444)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCeEEEEEe-cC--CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccC
Confidence 568889999999999998776433 456665 43 24899999999999973 78999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhc
Q 023912 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 114 (275)
Q Consensus 63 ~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~ 114 (275)
|+|++++|.|++.|++.+. +++++|.|+|.+|||. ++.|++.+..
T Consensus 118 Kgglaa~l~Al~~l~~~~~--~~~~~i~l~~~~dEE~-----g~~g~~~~~~ 162 (444)
T PRK07205 118 KGPSMAALYAVKALLDAGV--QFNKRIRFIFGTDEET-----LWRCMNRYNE 162 (444)
T ss_pred cHHHHHHHHHHHHHHHcCC--CCCCcEEEEEECCccc-----CcccHHHHHh
Confidence 9999999999999999887 7889999999999996 3457777664
No 59
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.89 E-value=6.3e-22 Score=188.91 Aligned_cols=186 Identities=22% Similarity=0.167 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC--------------------CccCCh
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GIFDGS 63 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------G~~D~~ 63 (275)
++.++++||.++|+++|++++. .+|++++.... ++.|+|+|.|||||||.+ |+.|||
T Consensus 32 ~~~~~~~~l~~~~~~~g~~~~~--~~~~~~~~~~~-~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~K 108 (447)
T TIGR01887 32 GPKKALDKFLELAKRDGFTTEN--VDNYAGYAEYG-QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDK 108 (447)
T ss_pred hHHHHHHHHHHHHHHcCceEEE--ecCceEEEEeC-CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCc
Confidence 4689999999999999999873 45765543221 124799999999999962 788999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChh
Q 023912 64 LGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIA 143 (275)
Q Consensus 64 ~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~ 143 (275)
+++++++.|++.|++.+. +++++|.|+|++|||. ++.|++.+....... | .++..+
T Consensus 109 G~laa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~~~-----~------------~~~~~d 164 (447)
T TIGR01887 109 GPTIAALYAMKILKELGL--KLKKKIRFIFGTDEET-----GWACIDYYFEHEEAP-----D------------IGFTPD 164 (447)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCCcEEEEEECCccc-----CcHhHHHHHHhcCCC-----C------------EEEeCC
Confidence 999999999999999887 7889999999999996 456877766421100 0 011111
Q ss_pred h---HhhhhhccCCCceeeEEEEecccCcc----------ccccCcce---eEEEeee-------------------cce
Q 023912 144 E---ESLLQLKYDPASVWGYIEVHIEQGPV----------LEWVGFPL---GVVQGIA-------------------GQT 188 (275)
Q Consensus 144 ~---~~~~e~~~~~~~i~~~~~~Hie~g~~----------le~~~~~~---gvv~~~~-------------------G~~ 188 (275)
. .+++|+. ...+++.+..+.. -++++... -++.+++ |..
T Consensus 165 ~~~~~~~~e~g------~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (447)
T TIGR01887 165 AEFPIIYGEKG------IVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSF 238 (447)
T ss_pred CCcceEEEecC------eEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEE
Confidence 1 2233321 1233333321110 01111110 0233344 555
Q ss_pred -----EEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 023912 189 -----RLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (275)
Q Consensus 189 -----~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~ 224 (275)
|++|+++|+++|++ .|+. +.|||..|++++.+++
T Consensus 239 ~~~~~~~~i~v~G~~aHss-~p~~-G~NAi~~l~~~l~~l~ 277 (447)
T TIGR01887 239 EVNDGTATITLEGKSAHGS-APEK-GINAATYLALFLAQLN 277 (447)
T ss_pred EecCCEEEEEEEeeecccC-CCcc-CccHHHHHHHHHHhcc
Confidence 89999999999985 8987 5999999999999986
No 60
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.89 E-value=6.4e-22 Score=189.84 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCCC--------------------CccCC
Q 023912 3 PASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GIFDG 62 (275)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------------G~~D~ 62 (275)
..+.++++|+.++|+++||+++.. .|+++.+.+.. +.++|+|.+||||||++ |+.||
T Consensus 42 ~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~-~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~ 118 (466)
T TIGR01886 42 PGPVDALTKFLSFAERDGFTTKNF--DNYAGHVEYGA-GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDD 118 (466)
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEe--cCCceeEEecC-CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCcccc
Confidence 457789999999999999998742 35545443322 35899999999999973 78999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhc
Q 023912 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 114 (275)
Q Consensus 63 ~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~ 114 (275)
|++++++|.|+++|++.+. +++++|.|+|.+|||. ++.|++.+..
T Consensus 119 Kg~~~a~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~g~~~~~~ 163 (466)
T TIGR01886 119 KGPSLAAYYAMKILKELGL--PPSKKIRFVVGTNEET-----GWVDMDYYFK 163 (466)
T ss_pred chHHHHHHHHHHHHHHhCC--CCCCCEEEEEECcccc-----CcccHHHHHh
Confidence 9999999999999999988 8899999999999996 4568887765
No 61
>PRK06156 hypothetical protein; Provisional
Probab=99.82 E-value=1.1e-18 Score=169.56 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCcccEE--EEecCCCCCCCEEEEeccccccCCC--------------------------
Q 023912 6 VRAGNLIRQWMEDAGLRTWVDHLGNVH--GRVEGLNASAQALLIGSHLDTVVDA-------------------------- 57 (275)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~~~nvi--a~~~g~~~~~~~vll~aH~DtVp~~-------------------------- 57 (275)
..+++||.++|+++|++++. .+|++ ++++|++ .|+|+|.+||||||++
T Consensus 75 ~~~~~~l~~~l~~~G~~~~~--~~~~v~~~~~~g~~--~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGR 150 (520)
T PRK06156 75 IGFKKLLKSLARDFGLDYRN--VDNRVLEIGLGGSG--SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGR 150 (520)
T ss_pred HHHHHHHHHHHHHCCCeEEe--cCCeEEEEEecCCC--CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEc
Confidence 35679999999999999853 45754 6776643 4899999999999851
Q ss_pred CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcc
Q 023912 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 115 (275)
Q Consensus 58 G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~ 115 (275)
|+.|||+|++++|.|++.|++.+. +++++|.|+|++|||. ++.|++.+...
T Consensus 151 G~~D~Kgg~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~-----g~~G~~~~~~~ 201 (520)
T PRK06156 151 GTEDDKGAIVTALYAMKAIKDSGL--PLARRIELLVYTTEET-----DGDPLKYYLER 201 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHcCC--CCCceEEEEEeccccc-----CchhHHHHHHh
Confidence 678999999999999999999887 7789999999999996 45688887743
No 62
>PRK08554 peptidase; Reviewed
Probab=99.76 E-value=1.8e-17 Score=157.99 Aligned_cols=88 Identities=25% Similarity=0.227 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe---CcccEEEEecCCCCCCCEEEEeccccccCCC---------------------Ccc
Q 023912 5 SVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------GIF 60 (275)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d---~~~nvia~~~g~~~~~~~vll~aH~DtVp~~---------------------G~~ 60 (275)
+.++++|+.++|+++|++++.. ...|+++.+. . +.+.|+|.|||||||++ |++
T Consensus 26 ~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~-~--~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~ 102 (438)
T PRK08554 26 SKECPKFIKDTLESWGIESELIEKDGYYAVYGEIG-E--GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSA 102 (438)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeC-C--CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcc
Confidence 6889999999999999997643 2358888873 2 24789999999999963 778
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 023912 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (275)
Q Consensus 61 D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~ 99 (275)
|||+|++++|.|++.|++. .++++|.|+|++|||.
T Consensus 103 DmKgg~aa~l~A~~~l~~~----~~~~~i~l~~~~dEE~ 137 (438)
T PRK08554 103 DDKGNVASVMLALKELSKE----PLNGKVIFAFTGDEEI 137 (438)
T ss_pred cchHHHHHHHHHHHHHHhc----CCCCCEEEEEEccccc
Confidence 9999999999999999874 4578999999999996
No 63
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.66 E-value=8.8e-16 Score=140.62 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeC--------------------cccEEEEecCCCCCCCEEEEeccccccCC-----
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDH--------------------LGNVHGRVEGLNASAQALLIGSHLDTVVD----- 56 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~--------------------~~nvia~~~g~~~~~~~vll~aH~DtVp~----- 56 (275)
|+.|.++++||+++|+++|++++... ..|||++++|+. .+.|++.+|+|||++
T Consensus 51 S~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~ 128 (346)
T PRK10199 51 SPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDAD 128 (346)
T ss_pred CHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCCCc
Confidence 78899999999999999999875321 146999998854 478999999999963
Q ss_pred ----------CCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccc
Q 023912 57 ----------AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL 116 (275)
Q Consensus 57 ----------~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~ 116 (275)
-|++||++|++++|++++.|++. +++++|.|+++++||. ++.||+.++..+
T Consensus 129 ~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~----~~~~~I~fv~~~~EE~-----Gl~GS~~~~~~~ 189 (346)
T PRK10199 129 VDANLGGLTLQGMDDNAAGLGVMLELAERLKNV----PTEYGIRFVATSGEEE-----GKLGAENLLKRM 189 (346)
T ss_pred cccCCCCcccCCccccHHHHHHHHHHHHHHhhC----CCCCcEEEEEECCccc-----CcHHHHHHHHhc
Confidence 18999999999999999999865 4578999999999996 678999998643
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.47 E-value=8.2e-13 Score=121.94 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCe------EE-----Ee--CcccEEEEecCCCCCCCEEEEeccccccCCC-----------
Q 023912 2 SPASVRAGNLIRQWMEDAGLR------TW-----VD--HLGNVHGRVEGLNASAQALLIGSHLDTVVDA----------- 57 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~------v~-----~d--~~~nvia~~~g~~~~~~~vll~aH~DtVp~~----------- 57 (275)
|..|...+++|...|.++-+- ++ -| ...||+|-++|.. ..++|++.||+|||...
T Consensus 26 T~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~-~k~tvvl~gH~DtV~iedYg~lKd~Afd 104 (553)
T COG4187 26 TPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGT-SKRTVVLHGHFDTVSIEDYGELKDLAFD 104 (553)
T ss_pred CcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCC-CCceEEEeeccceeecccccchhhhccC
Confidence 456888999999999886541 11 13 2469999999854 35899999999999752
Q ss_pred --------------------------------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCC
Q 023912 58 --------------------------------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQST 105 (275)
Q Consensus 58 --------------------------------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~ 105 (275)
|+.|||+|+|+.|+.++.+.+.+ ...++|.|+.+||||..
T Consensus 105 p~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~~---~~~GNlLf~a~pdEE~~----- 176 (553)
T COG4187 105 PLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAART---DRQGNLLFMAVPDEEVE----- 176 (553)
T ss_pred HHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhCC---CCCCcEEEEeccchhhh-----
Confidence 78899999999999999998875 67899999999999962
Q ss_pred cccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeee
Q 023912 106 FLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIA 185 (275)
Q Consensus 106 ~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~ 185 (275)
..|.+..+..++ ..-++.++ +.-..+..+.-....+....--+.++..
T Consensus 177 s~G~r~a~~~L~---------------~L~kk~~l-----------------~~~~~IN~D~~~~~~dGd~~ryvYtGti 224 (553)
T COG4187 177 SRGMREARPALP---------------GLKKKFDL-----------------EYTAAINLDVTSDQGDGDQGRYVYTGTI 224 (553)
T ss_pred cccHHHHHHHHH---------------HHHHhhCc-----------------eEEEEeccccccCCCCCccceEEEeccc
Confidence 345555443221 00111111 1111222221000111111223667888
Q ss_pred cceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 023912 186 GQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLER 225 (275)
Q Consensus 186 G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~ 225 (275)
|..---.-|.|+..|.| .|.. |+||-..+++++.+|+-
T Consensus 225 GKLLp~f~vvG~etHvG-~~f~-Gvnan~maSei~~~le~ 262 (553)
T COG4187 225 GKLLPFFFVVGCETHVG-YPFE-GVNANFMASEITRRLEL 262 (553)
T ss_pred hhhcceeEEEeeccccC-Cccc-CCCHHHHHHHHHHHhhc
Confidence 88888899999999997 8988 59999999999999874
No 65
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.26 E-value=1.4e-11 Score=94.87 Aligned_cols=80 Identities=28% Similarity=0.341 Sum_probs=64.1
Q ss_pred EeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEEEEEEEEe
Q 023912 182 QGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISS 261 (275)
Q Consensus 182 ~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvg~i~g 261 (275)
++++|..+++|+++|+++|+| .|.. ++||+..|++++.+|+++..+... . . .......++++++.|++
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s-~~~~-g~nai~~~~~~l~~l~~~~~~~~~-~--------~-~~~~~~~~~~~~~~i~g 68 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSS-RPEK-GVNAIEAAARFLNALEELEFEWAF-R--------P-EEFFPGPPTLNIGSIEG 68 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETT-SGGG-SBCHHHHHHHHHHHHHHTTCHBTS-T--------H-HHCTCTSEEEEEEEEEE
T ss_pred CcCCCEEEEEEEEEeeccCCC-CccC-ccCHHHHHHHHHHHHHHhhccccc-c--------c-ccccccccceeEeeccc
Confidence 367999999999999999997 8987 499999999999999987543100 0 0 00123689999999999
Q ss_pred cCCcceeecCcee
Q 023912 262 WPSASNVIPGEIL 274 (275)
Q Consensus 262 gg~~~NvIP~~~~ 274 (275)
| .+.|+||++|+
T Consensus 69 G-~~~n~ip~~a~ 80 (111)
T PF07687_consen 69 G-TAPNVIPDEAT 80 (111)
T ss_dssp E-SSTTEESSEEE
T ss_pred C-CcCCEECCEEE
Confidence 4 89999999996
No 66
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.25 E-value=5.3e-11 Score=110.04 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCC----------------C-------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD----------------A------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~----------------~------- 57 (275)
.|+.|.++++|+.++|+++|++++.|..+|++++++|.. +.|.|+|.||||+|.- |
T Consensus 18 ~SG~E~~V~~~l~~~l~~~g~ev~~D~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~V~~I~~~G~l~~~~iGG~~~~~l 96 (343)
T TIGR03106 18 PTGFTDAVVRYVAERLEDLGIEYELTRRGAIRATLPGRE-ATPARAVVTHLDTLGAMVRELKDNGRLELVPIGHWSARFA 96 (343)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEECCCeEEEEEECCCC-CCCeEEEEEeeccccceeeEECCCCeEEEEecCCCcccce
Confidence 368899999999999999999999999999999987743 2479999999999972 0
Q ss_pred -------------------C------------------------------------------------------------
Q 023912 58 -------------------G------------------------------------------------------------ 58 (275)
Q Consensus 58 -------------------G------------------------------------------------------------ 58 (275)
|
T Consensus 97 ~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd~v~~~~~~~~~~~~~ 176 (343)
T TIGR03106 97 EGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGDFVAFDPQPEFLANGF 176 (343)
T ss_pred eCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCCEEEECCccEEecCCE
Confidence 0
Q ss_pred ----ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 023912 59 ----IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (275)
Q Consensus 59 ----~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~ 99 (275)
+.|||.|+++++++++.|++.+. +++.+|.++|+++||.
T Consensus 177 i~gr~~D~K~G~a~~l~~~~~l~~~~~--~~~~~v~~~~t~qEEv 219 (343)
T TIGR03106 177 IVSRHLDDKAGVAALLAALKAIVEHKV--PLPVDVHPLFTITEEV 219 (343)
T ss_pred EEEEecccHHhHHHHHHHHHHHHhcCC--CCCceEEEEEECCccc
Confidence 15999999999999999998775 6789999999999996
No 67
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.17 E-value=1.7e-10 Score=106.79 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCC--------C---------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~--------~--------------- 57 (275)
.|+.|.+++++++++|++++.++++|..||+++.++|...++|.|+|.||||+|+- |
T Consensus 13 pSG~E~~v~~~i~~~l~~~~~~v~~D~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~~~~vGG~~~~~l 92 (350)
T TIGR03107 13 TSGFEHPIRDYLRQDITPLVDQVETDGLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFRVVELGGWNPLVV 92 (350)
T ss_pred CCCCcHHHHHHHHHHHHhhCCEEEECCCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEEEEeCCCcccccc
Confidence 48899999999999999999999999999999998764112479999999999972 0
Q ss_pred --------------------------------------------------------------------------------
Q 023912 58 -------------------------------------------------------------------------------- 57 (275)
Q Consensus 58 -------------------------------------------------------------------------------- 57 (275)
T Consensus 93 ~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~~~~~~~~~~~~i 172 (350)
T TIGR03107 93 SSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQTETILTANGKNV 172 (350)
T ss_pred CCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEECCCeEEEcCCCEE
Confidence
Q ss_pred --CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccc
Q 023912 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120 (275)
Q Consensus 58 --G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~ 120 (275)
-+.|++.|+++++++++.|++. +++.+|.++|++-||. |+.||+.....++++.
T Consensus 173 ~~kalDdR~g~a~l~e~l~~l~~~----~~~~~l~~~~tvqEEv-----G~rGA~~aa~~i~pD~ 228 (350)
T TIGR03107 173 ISKAWDNRYGVLMILELLESLKDQ----ELPNTLIAGANVQEEV-----GLRGAHVSTTKFNPDI 228 (350)
T ss_pred EEeccccHHHHHHHHHHHHHhhhc----CCCceEEEEEEChhhc-----CchhhhhHHhhCCCCE
Confidence 0258899999999999999865 4578899999999996 6789998777776653
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=99.16 E-value=1.9e-10 Score=106.44 Aligned_cols=109 Identities=20% Similarity=0.260 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCC----------------C-------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD----------------A------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~----------------~------- 57 (275)
.|+.|.++++++.++|+++|++++.|..+|++++++|+ ++|.|+|.||||+|+. |
T Consensus 15 ~sG~E~~v~~~i~~~l~~~~~~v~~D~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~~~G~l~~~~vGG~~~~~~ 92 (344)
T PRK09961 15 IASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAAR 92 (344)
T ss_pred CCCChHHHHHHHHHHHHhhCCEEEECCCCCEEEEEcCC--CCCEEEEEeccceeceEEEEECCCceEEEEeCCCcccccc
Confidence 47899999999999999999999999999999998764 2479999999999982 1
Q ss_pred -----------C-----------------------------------------------------------ccCChHHHH
Q 023912 58 -----------G-----------------------------------------------------------IFDGSLGII 67 (275)
Q Consensus 58 -----------G-----------------------------------------------------------~~D~~~gva 67 (275)
| +.|++.|++
T Consensus 93 ~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~gkalDnR~g~~ 172 (344)
T PRK09961 93 QLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCY 172 (344)
T ss_pred CCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEEEeechhhHhHH
Confidence 1 248899999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccc
Q 023912 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120 (275)
Q Consensus 68 a~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~ 120 (275)
+++++++.|++. ++..+|+++|+..||. |..||+.....++++.
T Consensus 173 ~lle~l~~l~~~----~~~~~v~~~~tvqEEv-----G~rGa~~aa~~i~pd~ 216 (344)
T PRK09961 173 LLVTLLRELHDA----ELPAEVWLVASSSEEV-----GLRGGQTATRAVSPDV 216 (344)
T ss_pred HHHHHHHHhhhc----CCCceEEEEEEccccc-----chHHHHHHHhccCCCE
Confidence 999999999765 3578899999999995 5678888777666654
No 69
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.14 E-value=4.1e-10 Score=103.36 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeCc------ccEEEEec-------CCCCCCCEEEEeccccccCCC-------------
Q 023912 4 ASVRAGNLIRQWMEDAGLRTWVDHL------GNVHGRVE-------GLNASAQALLIGSHLDTVVDA------------- 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~------~nvia~~~-------g~~~~~~~vll~aH~DtVp~~------------- 57 (275)
+=+++++|++++|+++|-+++.... .+.+..++ |++|..+++++.+|||++|.+
T Consensus 40 ~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt 119 (473)
T KOG2276|consen 40 EVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLT 119 (473)
T ss_pred HHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEE
Confidence 4578999999999999976654221 22233333 777778999999999999964
Q ss_pred ---------CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccccccccCCCC
Q 023912 58 ---------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSG 128 (275)
Q Consensus 58 ---------G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g 128 (275)
|+.|+|+-|++.+.+++++++.++ .++-+|.|+|-.-||. ||..+.+.++. .+|
T Consensus 120 ~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~--~lpvnv~f~~EgmEEs--------gS~~L~~l~~~----~kD--- 182 (473)
T KOG2276|consen 120 EDDGKLFGRGATDDKGPVLSWIHAVKALQQLGI--DLPVNVVFVFEGMEES--------GSEGLDELIEK----EKD--- 182 (473)
T ss_pred EECCEEeccCcCCCCccchHHHHHHHHHHHhCc--cccceEEEEEEechhc--------cCccHHHHHHH----Hhh---
Confidence 788999999999999999999998 8999999999999995 56555432211 011
Q ss_pred CcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCccccccCcceeEEEeeecceEEEEEEEc--CCCCCCCCCC
Q 023912 129 VTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG--SQGHAGTVPM 206 (275)
Q Consensus 129 ~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~v~G--~~~Hag~~P~ 206 (275)
.+.-..|+.+++ ...=++ ....-+-++.+|...|.|+|.| +-.|||.
T Consensus 183 --------~~~~~vD~vciS------------------dnyWlg--~kkPcltyGlRG~~yf~i~v~g~~~DlHSGv--- 231 (473)
T KOG2276|consen 183 --------KFFKDVDFVCIS------------------DNYWLG--TKKPCLTYGLRGVIYFQIEVEGPSKDLHSGV--- 231 (473)
T ss_pred --------hhhccCCEEEee------------------Cceecc--CCCcccccccccceeEEEEEeeccccccccc---
Confidence 111111111111 001111 1223344677999999999999 8999984
Q ss_pred CCC--CCHHHHHHHHHHHHHH
Q 023912 207 SMR--QDPMTAAAELIVLLER 225 (275)
Q Consensus 207 ~~~--~dAi~~aa~~i~~l~~ 225 (275)
.|| .-|+..+..++..|.+
T Consensus 232 fGG~~hE~m~dL~~~ms~Lv~ 252 (473)
T KOG2276|consen 232 FGGVVHEAMNDLVLVMSSLVD 252 (473)
T ss_pred ccchhHHHHHHHHHHHHHhcC
Confidence 233 3566666666665554
No 70
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.6e-10 Score=104.07 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCC----------------C-------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD----------------A------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~----------------~------- 57 (275)
.|+.|.++++|+.++|++++.++++|..||++++++|.+ +.+.|++.+|||.|-. |
T Consensus 17 psG~E~eVr~~~~~el~~~~~ev~~D~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~ 95 (355)
T COG1363 17 PSGYEEEVRDVLKEELEPLGDEVEVDRLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVL 95 (355)
T ss_pred CCCcHHHHHHHHHHHHHHhCCceEEcCCCcEEEEecCCC-CCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhc
Confidence 478899999999999999999999999999999999843 2356999999999852 1
Q ss_pred ---------------------------------------------------------C----------------------
Q 023912 58 ---------------------------------------------------------G---------------------- 58 (275)
Q Consensus 58 ---------------------------------------------------------G---------------------- 58 (275)
|
T Consensus 96 ~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~ 175 (355)
T COG1363 96 EGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVV 175 (355)
T ss_pred cCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEE
Confidence 0
Q ss_pred --ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccc
Q 023912 59 --IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120 (275)
Q Consensus 59 --~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~ 120 (275)
+.|++.|++++|++++.| + +. .++.+++++|++-||. |+.||+.....++++.
T Consensus 176 skalDdR~gva~lle~lk~l-~-~~--~~~~~vy~v~tvqEEV-----GlrGA~~~a~~i~pd~ 230 (355)
T COG1363 176 SKALDDRAGVAALLELLKEL-K-GI--ELPADVYFVASVQEEV-----GLRGAKTSAFRIKPDI 230 (355)
T ss_pred eeeccchHhHHHHHHHHHHh-c-cC--CCCceEEEEEecchhh-----ccchhhccccccCCCE
Confidence 259999999999999999 4 44 6889999999999996 6789988887766553
No 71
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.07 E-value=1.6e-10 Score=108.60 Aligned_cols=194 Identities=20% Similarity=0.104 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCccc-------------EEEEecCCCCCCCEEEEeccccccCC------------
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGN-------------VHGRVEGLNASAQALLIGSHLDTVVD------------ 56 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~n-------------via~~~g~~~~~~~vll~aH~DtVp~------------ 56 (275)
|..|.+++.|+.+|++.+|+.++ |+.+| +.+++++..+.-|.+-+.+||||+|.
T Consensus 21 S~~e~~~~p~~~~~~k~~~~~v~-dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~ 99 (414)
T COG2195 21 SKHEKAVAPSTVGQAKLLGLLVE-DELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILK 99 (414)
T ss_pred CCCccccccccHHHHHHcCchhh-hhhccccccccccCCCCeeeEEeeccccccccccccccccccccccccccCCceee
Confidence 67899999999999999999985 54333 44556554333477888888888852
Q ss_pred ---C---------------------------------Cc----cCChHHHHHHHHHHHHHHHc--CCCCCCCCCEEEEEe
Q 023912 57 ---A---------------------------------GI----FDGSLGIITAISALKVLKST--GKLGKLKRPVEVIAF 94 (275)
Q Consensus 57 ---~---------------------------------G~----~D~~~gvaa~l~a~~~L~~~--~~~~~~~~~i~li~~ 94 (275)
| |+ .|.|+|++.++.++..+++. .+ ++++|++.|+
T Consensus 100 ~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~~~i---~h~~i~~g~s 176 (414)
T COG2195 100 ATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKHPEI---PHGGIRGGFS 176 (414)
T ss_pred eccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcCccc---cccCeEEEec
Confidence 0 21 48899999999999999966 43 6899999999
Q ss_pred cCCCCCCCCCCcccchhhhcccccccccccCCCCCcHHHHHHhCCCChhhHhhhhhccCCCceeeEEEEecccCcccccc
Q 023912 95 SDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWV 174 (275)
Q Consensus 95 ~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~~~l~~~g~~~~~~~~~e~~~~~~~i~~~~~~Hie~g~~le~~ 174 (275)
++||. ++.|+..+.- .+.. .+..+.+ +.
T Consensus 177 ~~Ee~-----g~rg~~~~~~---------------------a~f~-----------------a~~ay~i--DG------- 204 (414)
T COG2195 177 PDEEI-----GGRGAANKDV---------------------ARFL-----------------ADFAYTL--DG------- 204 (414)
T ss_pred chHHh-----hhhhhhhccH---------------------Hhhh-----------------cceeEec--CC-------
Confidence 99996 4466655431 1110 0111111 11
Q ss_pred CcceeEEEeeecceEEEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCcccccCCCCeEE
Q 023912 175 GFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVC 254 (275)
Q Consensus 175 ~~~~gvv~~~~G~~~~~i~v~G~~~Hag~~P~~~~~dAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (275)
+....+.....+...+++++.|+..|+++.+.. ..||+..+.+++..+..- +.+..++.
T Consensus 205 g~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~-~i~a~~~a~e~~~~~~~~--------------------~~~e~t~~ 263 (414)
T COG2195 205 GPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK-MINALLLAAEFILELPLE--------------------EVPELTEG 263 (414)
T ss_pred CccCeeeeeccchheeeeeeeccCcCccchHHH-HhhHHHhhhhhhhcCCcc--------------------cccccccc
Confidence 122335555678889999999999999976655 389998888887665431 12246778
Q ss_pred EEEEEEecCCcceeecCce
Q 023912 255 TVGEISSWPSASNVIPGEI 273 (275)
Q Consensus 255 tvg~i~ggg~~~NvIP~~~ 273 (275)
+.|..+. ++..|.|.+++
T Consensus 264 ~~Gv~~~-~~~~~~V~~~s 281 (414)
T COG2195 264 PEGVYHL-GDSTNSVEETS 281 (414)
T ss_pred cceEEec-cccccchhhhh
Confidence 8999999 58888888554
No 72
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.99 E-value=8.6e-10 Score=92.43 Aligned_cols=62 Identities=34% Similarity=0.390 Sum_probs=52.5
Q ss_pred EEeccccccCC--------------------CCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCC
Q 023912 46 LIGSHLDTVVD--------------------AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQST 105 (275)
Q Consensus 46 ll~aH~DtVp~--------------------~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~ 105 (275)
+|.+||||||. .|+.|+|++++++|.+++.|++.+. +++++|.|+|+++||.+
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~g----- 73 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGD--DLPGNIIFLFTPDEEIG----- 73 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTT--TCSSEEEEEEESTCCGT-----
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccc--cccccccccccccccCC-----
Confidence 68999999991 2889999999999999999998877 89999999999999963
Q ss_pred cc-cchhhhc
Q 023912 106 FL-GSAALAG 114 (275)
Q Consensus 106 ~~-Gs~~~~~ 114 (275)
.. |++.++.
T Consensus 74 ~~~g~~~l~~ 83 (189)
T PF01546_consen 74 SIGGAKHLLE 83 (189)
T ss_dssp STTHHHHHHH
T ss_pred Ccchhhhhhh
Confidence 33 7777764
No 73
>PRK09864 putative peptidase; Provisional
Probab=98.98 E-value=3.1e-09 Score=98.51 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEeCcccEEEEecCCCCCCCEEEEeccccccCC--------C---------------
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvia~~~g~~~~~~~vll~aH~DtVp~--------~--------------- 57 (275)
.|+.|.++++++.++|+.++.+++.|..||+++.. |. +++.|+|.||||.|+- |
T Consensus 15 ~SG~E~~v~~~l~~~l~~~~dev~~D~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~~~G~l~~~~lGG~~~~~l 91 (356)
T PRK09864 15 VSGDEQEVRDILINTLEPCVNEITFDGLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSM 91 (356)
T ss_pred CCCchHHHHHHHHHHHHHhCCEEEECCCCCEEEEe-CC--CCcEEEEEecccccCEEEEEECCCCeEEEEeCCCcCcccc
Confidence 48899999999999999999999999999999986 53 2479999999999972 1
Q ss_pred ---------------------------------------------C----------------------------------
Q 023912 58 ---------------------------------------------G---------------------------------- 58 (275)
Q Consensus 58 ---------------------------------------------G---------------------------------- 58 (275)
|
T Consensus 92 ~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~~~~l~~~~i~~ 171 (356)
T PRK09864 92 LNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEANFACWGEDKVVG 171 (356)
T ss_pred CCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCCcEEEcCCEEEE
Confidence 0
Q ss_pred -ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccccccc
Q 023912 59 -IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA 120 (275)
Q Consensus 59 -~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~~ 120 (275)
+.|++.|+++++++++.|++ ++.+++++|++-||. |+.||+..+..++++.
T Consensus 172 kalDnR~g~~~lle~l~~l~~------~~~~vy~v~TvQEEv-----GlrGA~~aa~~i~PDi 223 (356)
T PRK09864 172 KALDNRIGCAMMAELLQTVNN------PEITLYGVGSVEEEV-----GLRGAQTSAEHIKPDV 223 (356)
T ss_pred EeCccHHHHHHHHHHHHHhhc------CCCeEEEEEEcchhc-----chHHHHHHHhcCCCCE
Confidence 24899999999999998853 457899999999996 6789998887777664
No 74
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.94 E-value=1e-09 Score=91.88 Aligned_cols=64 Identities=31% Similarity=0.469 Sum_probs=54.7
Q ss_pred EEEEeccccccC------C-CCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhc
Q 023912 44 ALLIGSHLDTVV------D-AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 114 (275)
Q Consensus 44 ~vll~aH~DtVp------~-~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~ 114 (275)
.|+++||+|+++ . .|+.|+.+|++++|+.+|.|++.+. +++++|+|+||.+||. ++.||++++.
T Consensus 2 ~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~--~~~~~i~fv~~~~EE~-----gl~GS~~~~~ 72 (179)
T PF04389_consen 2 YIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKP--QPKRTIRFVFFDGEEQ-----GLLGSRAFVE 72 (179)
T ss_dssp EEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTH--SSSEEEEEEEESSGGG-----TSHHHHHHHH
T ss_pred EEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhc--ccCccEEEEEeccccc-----CccchHHHHH
Confidence 689999999986 3 3899999999999999999999766 7889999999999995 6899999985
No 75
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.76 E-value=2.5e-08 Score=99.55 Aligned_cols=107 Identities=27% Similarity=0.384 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHcCCe-------EEEe------------------CcccEEEEecCCCCCC-CEEEEeccccccCCC
Q 023912 4 ASVRAGNLIRQWMEDAGLR-------TWVD------------------HLGNVHGRVEGLNASA-QALLIGSHLDTVVDA 57 (275)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~-------v~~d------------------~~~nvia~~~g~~~~~-~~vll~aH~DtVp~~ 57 (275)
.|..+.+|+.+++.++.-. .+.| ..-||+.++.++..+. -.|++++|.|+||.+
T Consensus 79 ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~ 158 (834)
T KOG2194|consen 79 NEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKISPKNGNDKNALLLNAHFDSVPTG 158 (834)
T ss_pred hHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecCCCCCCccceeeeeccccccCCC
Confidence 4668888888887664311 1111 1258999997654333 489999999999986
Q ss_pred -CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccc
Q 023912 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (275)
Q Consensus 58 -G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (275)
|+.|+.++|++||+++|.+.+... .+.++|+|+|..+||. .+.||..++.+.+
T Consensus 159 ~gAtDDg~~va~mLe~lRv~s~~~~--~l~~~vVFLfNgaEE~-----~L~gsH~FItQH~ 212 (834)
T KOG2194|consen 159 PGATDDGSGVASMLEALRVLSKSDK--LLTHSVVFLFNGAEES-----GLLGSHAFITQHP 212 (834)
T ss_pred CCCCcchhHHHHHHHHHHHhhcCCC--cccccEEEEecCcccc-----hhhhcccceecCh
Confidence 889999999999999999998865 6799999999999997 5789999988655
No 76
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=98.21 E-value=3.5e-06 Score=80.17 Aligned_cols=67 Identities=34% Similarity=0.502 Sum_probs=59.9
Q ss_pred CCEEEEeccccccCCC-CccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccc
Q 023912 42 AQALLIGSHLDTVVDA-GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (275)
Q Consensus 42 ~~~vll~aH~DtVp~~-G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (275)
.+.+++.+|+|++|.+ |+.|+.+|++++|+++|.|+.. .++++|.|+++..||. ++.||.+++..+.
T Consensus 208 ~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~----~p~~~v~f~~~~aEE~-----Gl~GS~~~~~~~~ 275 (435)
T COG2234 208 DSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN----PPKRTVRFVAFGAEES-----GLLGSEAYVKRLS 275 (435)
T ss_pred CceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC----CCCceEEEEEecchhh-----cccccHHHHhcCC
Confidence 3688889999998874 9999999999999999999987 4789999999999995 6899999998765
No 77
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=98.19 E-value=4.9e-06 Score=83.06 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=67.5
Q ss_pred CcccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHH---HcCCCCCCCCCEEEEEecCCCCCCCC
Q 023912 27 HLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLK---STGKLGKLKRPVEVIAFSDEEGVRFQ 103 (275)
Q Consensus 27 ~~~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~---~~~~~~~~~~~i~li~~~dEE~~~~~ 103 (275)
...||+++++|+.....-|++++|-|+.-.| +.|...|++.++++++++. ..+. +|+|+|+|++|.+||.
T Consensus 337 ki~NIig~I~Gs~epD~~ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~~~k~gw--rP~RtI~F~sWdAeEf---- 409 (702)
T KOG2195|consen 337 KIQNIIGKIEGSEEPDRYVIIGAHRDSWTFG-AIDPNSGTALLLEIARALSKLKKRGW--RPRRTILFASWDAEEF---- 409 (702)
T ss_pred eeeeEEEEEecCcCCCeEEEEeccccccccC-CcCCCccHHHHHHHHHHHHHHHHcCC--CccceEEEEEccchhc----
Confidence 3579999999944335899999999999886 8888889888888877664 5688 8999999999999995
Q ss_pred CCcccchhhhcc
Q 023912 104 STFLGSAALAGI 115 (275)
Q Consensus 104 ~~~~Gs~~~~~~ 115 (275)
|++||..+++.
T Consensus 410 -GliGStE~~E~ 420 (702)
T KOG2195|consen 410 -GLLGSTEWAEE 420 (702)
T ss_pred -cccccHHHHHH
Confidence 67999888863
No 78
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.00 E-value=7.8e-06 Score=74.14 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcccccc
Q 023912 60 FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS 119 (275)
Q Consensus 60 ~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~~~~ 119 (275)
.|++.|+++++++++.|++.+ .+.+|.++|++-||. ++.|++.....+.++
T Consensus 133 lDdR~g~~~lle~l~~l~~~~----~~~~v~~v~tvqEEv-----G~rGA~~aa~~i~PD 183 (292)
T PF05343_consen 133 LDDRAGCAVLLELLRELKEKE----LDVDVYFVFTVQEEV-----GLRGAKTAAFRIKPD 183 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-----SSEEEEEEESSCTT-----TSHHHHHHHHHH-CS
T ss_pred CCchhHHHHHHHHHHHHhhcC----CCceEEEEEEeeeee-----cCcceeecccccCCC
Confidence 488999999999999998864 458999999999996 678998887766554
No 79
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.5e-05 Score=67.55 Aligned_cols=112 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeC-----------cccEEEEecCCCCCCCEEEEeccccccC-CC----CccCChHH
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDH-----------LGNVHGRVEGLNASAQALLIGSHLDTVV-DA----GIFDGSLG 65 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~-----------~~nvia~~~g~~~~~~~vll~aH~DtVp-~~----G~~D~~~g 65 (275)
|+...++++||.+.|+.+|+.++.|. +.|+++++.... ..-+++.+|+|+=- ++ |+.|-...
T Consensus 68 s~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A--~r~lVlachydsk~~p~~~~vgatdsAvp 145 (338)
T KOG3946|consen 68 SPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNA--SRYLVLACHYDSKIFPGGMFVGATDSAVP 145 (338)
T ss_pred CCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCc--chheeeecccccccCCCcceEeecccccc
Confidence 56778999999999999999888763 368999997542 47899999999963 22 67788888
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCCEEEEEecCCCC-CCCC--CCcccchhhhcc
Q 023912 66 IITAISALKVLKSTGK--LGKLKRPVEVIAFSDEEG-VRFQ--STFLGSAALAGI 115 (275)
Q Consensus 66 vaa~l~a~~~L~~~~~--~~~~~~~i~li~~~dEE~-~~~~--~~~~Gs~~~~~~ 115 (275)
.+++|..+++|.+.-. ...+.-.+.++|+-+||. ..+| .+.-|||+++..
T Consensus 146 camll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 146 CAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAK 200 (338)
T ss_pred HHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHH
Confidence 8889999988865311 003456799999999995 1122 345699999875
No 80
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=97.01 E-value=0.0027 Score=58.36 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=60.3
Q ss_pred ccEEEEecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCc--
Q 023912 29 GNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTF-- 106 (275)
Q Consensus 29 ~nvia~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~-- 106 (275)
.|+|+.-.+. ...+++++|+|+-.. |..|+..|+++++++++.|+..+. ...++.+++||.+.|+...
T Consensus 179 y~~Ia~~~~e---n~vv~i~AH~DHW~~-G~tDN~lg~~~AV~~~~~lr~~~~------~~~lv~FtAEE~g~p~~~sfy 248 (486)
T COG4882 179 YNVIAVDGGE---NGVVLIGAHLDHWYT-GFTDNILGVAQAVETAGRLRGRGL------AAGLVVFTAEEHGMPGMASFY 248 (486)
T ss_pred EEEEEecCCC---CCceEEeechhhhhh-cccchhhhHHHHHHHHHHHhhcCc------ceeEEEEeccccCCCCCccee
Confidence 4788876554 368999999999986 689999999999999999987653 4678888999975443221
Q ss_pred --ccchhhhcccc
Q 023912 107 --LGSAALAGILP 117 (275)
Q Consensus 107 --~Gs~~~~~~~~ 117 (275)
.||+.+.+..+
T Consensus 249 Wa~GSr~~lk~~k 261 (486)
T COG4882 249 WAAGSRGLLKESK 261 (486)
T ss_pred ecccchHHHhhcC
Confidence 48887776554
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=96.90 E-value=0.0032 Score=55.36 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=55.8
Q ss_pred CEEEEeccccccCC-----CCccCChHHHHHHHHHHHHHHHc-CCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhccc
Q 023912 43 QALLIGSHLDTVVD-----AGIFDGSLGIITAISALKVLKST-GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGIL 116 (275)
Q Consensus 43 ~~vll~aH~DtVp~-----~G~~D~~~gvaa~l~a~~~L~~~-~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~~ 116 (275)
|.|++.+.||+.-. -|+.+...|++++|++++.|.+. ...+.++++|.|+|+.+|-. +.+||+.++..+
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~-----dYiGS~R~vyDm 75 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF-----DYIGSSRFVYDM 75 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc-----cccchHHHHHHH
Confidence 57899999999742 27888889999999999999865 21125689999999999984 679999998654
No 82
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=94.75 E-value=0.14 Score=48.42 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=59.3
Q ss_pred ccEEEEec-CC-----CCCCCEEEEeccccccCCC-----CccCChHHHHHHHHHHHHHHHcC--CCCCCCCCEEEEEec
Q 023912 29 GNVHGRVE-GL-----NASAQALLIGSHLDTVVDA-----GIFDGSLGIITAISALKVLKSTG--KLGKLKRPVEVIAFS 95 (275)
Q Consensus 29 ~nvia~~~-g~-----~~~~~~vll~aH~DtVp~~-----G~~D~~~gvaa~l~a~~~L~~~~--~~~~~~~~i~li~~~ 95 (275)
.||.+++. |- +...|+|++.+|+||-... |+.-+.+|++++|+.++.+...- .-|..+.++.|+++.
T Consensus 194 ~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~ 273 (555)
T KOG2526|consen 194 LNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTA 273 (555)
T ss_pred ceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEcc
Confidence 58899886 32 2246999999999997542 66667789999999999987642 112457889998887
Q ss_pred CCCCCCCCCCcccchhhhc
Q 023912 96 DEEGVRFQSTFLGSAALAG 114 (275)
Q Consensus 96 dEE~~~~~~~~~Gs~~~~~ 114 (275)
+-- ....|++.|.+
T Consensus 274 aG~-----lNyqGTkkWLe 287 (555)
T KOG2526|consen 274 AGK-----LNYQGTKKWLE 287 (555)
T ss_pred Ccc-----ccccchhhhhh
Confidence 643 24579998875
No 83
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=84.93 E-value=2.3 Score=39.84 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=43.8
Q ss_pred EecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhh
Q 023912 34 RVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALA 113 (275)
Q Consensus 34 ~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~ 113 (275)
.++|.. ...|+|.+|+.+= .-+.|.-+|++.+++.++.|++.. .+.+.+|+|.|. .+||-.+.
T Consensus 123 ~ipG~s--~~EillsthiCHP--smANdnLSG~~v~~~La~~L~~~~----~rytYRflf~Pe---------TIGsI~yL 185 (386)
T PF09940_consen 123 VIPGES--DEEILLSTHICHP--SMANDNLSGPAVLTFLAKWLKQLP----NRYTYRFLFVPE---------TIGSITYL 185 (386)
T ss_dssp EE--SS--S-EEEEEEE------S-TTTTHHHHHHHHHHHHHHTTS------SSEEEEEEE-T---------THHHHHHH
T ss_pred EecCCC--CCeEEEEEeccCc--ccccccccHHHHHHHHHHHHhcCC----cCceEEEEEccc---------cHHHHHHH
Confidence 347753 4799999999984 468999999999999999998774 458999999885 36887666
Q ss_pred c
Q 023912 114 G 114 (275)
Q Consensus 114 ~ 114 (275)
.
T Consensus 186 s 186 (386)
T PF09940_consen 186 S 186 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.06 E-value=11 Score=37.24 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCeEEEeCc----------ccEEEEecCCCCC-CCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHH
Q 023912 10 NLIRQWMEDAGLRTWVDHL----------GNVHGRVEGLNAS-AQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKS 78 (275)
Q Consensus 10 ~~i~~~l~~~G~~v~~d~~----------~nvia~~~g~~~~-~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~ 78 (275)
.|...++++.|.++..... .|+++.+++.+.+ ...++|..-++.- .|. | ..+++.++..++++++
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~vP~~~~--~~~-~-~~~v~l~lsla~~f~r 167 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLVVPYGRS--SGS-N-SASVALLLSLADYFSR 167 (617)
T ss_pred hHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEEEecccC--CCc-c-hhHHHHHHHHHHHhcC
Confidence 4577788888998765443 4899999764322 3577775443332 122 2 5677778888888877
Q ss_pred cCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhhcc
Q 023912 79 TGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 115 (275)
Q Consensus 79 ~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~~~ 115 (275)
.-. ..++|+++++-++= .|-.++...
T Consensus 168 ~~y---WsKDII~v~~d~~~--------~g~~AwLea 193 (617)
T KOG3566|consen 168 WVY---WSKDIIFVFTDGPA--------LGLDAWLEA 193 (617)
T ss_pred Cee---ecccEEEEEeCCcc--------ccHHHHHHH
Confidence 653 78999999987733 466666643
No 85
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=73.80 E-value=10 Score=37.14 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=53.8
Q ss_pred ccEEEEecCCC-CCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcc
Q 023912 29 GNVHGRVEGLN-ASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFL 107 (275)
Q Consensus 29 ~nvia~~~g~~-~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~ 107 (275)
.|+++.++..+ .+...+++..-+++.- +..+ ..|++.+|+.++++++... ..++|+|+++.+|. .
T Consensus 4 ~nvy~i~rapR~d~tEaivl~~~~~~~~--~~~n-~~~v~l~lal~~~~~~~~~---wsKDii~l~~~~~~--------~ 69 (504)
T PF04114_consen 4 TNVYGILRAPRGDGTEAIVLVVPWRDSD--GEYN-AGGVALALALARYFRRQSY---WSKDIIFLFTDDEL--------A 69 (504)
T ss_pred eEEEEEEecCCCCCceeEEEEEecCCCC--cccc-hhhHHHHHHHHHHhhhchh---hhccEEEEecCCcc--------h
Confidence 38998886532 2246888988876542 2233 7789999999999998865 68999999876544 4
Q ss_pred cchhhhccc
Q 023912 108 GSAALAGIL 116 (275)
Q Consensus 108 Gs~~~~~~~ 116 (275)
|.+++.+.+
T Consensus 70 g~~awl~~Y 78 (504)
T PF04114_consen 70 GMQAWLEAY 78 (504)
T ss_pred HHHHHHHHH
Confidence 888887643
No 86
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=72.99 E-value=47 Score=32.29 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCeEEEe--------CcccEEEEecCCCCCCCEEEEeccccccCC-------C-------C------
Q 023912 7 RAGNLIRQWMEDAGLRTWVD--------HLGNVHGRVEGLNASAQALLIGSHLDTVVD-------A-------G------ 58 (275)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d--------~~~nvia~~~g~~~~~~~vll~aH~DtVp~-------~-------G------ 58 (275)
..++++.+.+++.|+++++- .++-+++.=+|+.. .|.++...+...=+. | |
T Consensus 175 ~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l~Y~g~~~~~~~i~LVGKGiTFDsGG~slKp 253 (468)
T cd00433 175 YLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVLEYKGKGASKKPIALVGKGITFDTGGLSLKP 253 (468)
T ss_pred HHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEEEECCCCCCCCcEEEEcCceEecCCCccccC
Confidence 45677888888889998753 23456666667653 366666555533211 1 2
Q ss_pred -------ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhh
Q 023912 59 -------IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALA 113 (275)
Q Consensus 59 -------~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~ 113 (275)
..|| +|-|+.+.+++++.+.+ ++.+|..+.-..|= |.|+.++.
T Consensus 254 ~~~M~~Mk~DM-~GAAaVlga~~aia~l~----~~vnV~~i~~~~EN-------~is~~A~r 303 (468)
T cd00433 254 AAGMDGMKYDM-GGAAAVLGAMKAIAELK----LPVNVVGVLPLAEN-------MISGNAYR 303 (468)
T ss_pred ccChhhccccc-hhHHHHHHHHHHHHHcC----CCceEEEEEEeeec-------CCCCCCCC
Confidence 1355 46678899999999885 56778877777765 45555554
No 87
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=64.09 E-value=65 Score=31.50 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCCeEEEe--------CcccEEEEecCCCCCCCEEEEeccccc----cCCC-------C---------
Q 023912 7 RAGNLIRQWMEDAGLRTWVD--------HLGNVHGRVEGLNASAQALLIGSHLDT----VVDA-------G--------- 58 (275)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d--------~~~nvia~~~g~~~~~~~vll~aH~Dt----Vp~~-------G--------- 58 (275)
..++++.+.+++.|+++++- .++-+++.=+|+.. .|.++...+.-. +-+| |
T Consensus 192 ~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~prli~l~Y~g~~~~i~LVGKGITFDsGG~slKp~~~ 270 (483)
T PRK00913 192 YLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSAN-PPRLIVLEYKGGKKPIALVGKGLTFDSGGISLKPAAG 270 (483)
T ss_pred HHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCC-CCeEEEEEECCCCCeEEEEcCceEecCCCccCCCCcC
Confidence 34566777777889988752 23557777677653 466666655411 1111 1
Q ss_pred ----ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCCCCCCCcccchhhh
Q 023912 59 ----IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALA 113 (275)
Q Consensus 59 ----~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~~~~~~~~~Gs~~~~ 113 (275)
..|| +|-|+.+++++++.+.+ ++-+|..+.-..|= |.|++++.
T Consensus 271 M~~MK~DM-~GAAaVlga~~aia~lk----l~vnV~~v~~l~EN-------m~~~~A~r 317 (483)
T PRK00913 271 MDEMKYDM-GGAAAVLGTMRALAELK----LPVNVVGVVAACEN-------MPSGNAYR 317 (483)
T ss_pred hhhccccc-HhHHHHHHHHHHHHHcC----CCceEEEEEEeecc-------CCCCCCCC
Confidence 2455 46677899999999874 56788887777765 34555554
No 88
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=57.72 E-value=77 Score=29.13 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCeEEEeC--------c-------------cc-EEEEecCCC-CCCCEEEEecc---ccc-----cC
Q 023912 7 RAGNLIRQWMEDAGLRTWVDH--------L-------------GN-VHGRVEGLN-ASAQALLIGSH---LDT-----VV 55 (275)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d~--------~-------------~n-via~~~g~~-~~~~~vll~aH---~Dt-----Vp 55 (275)
..++++++.+++.|+++++-. . +. |+.+++|.. +..++|+|-|= +|| =|
T Consensus 19 ~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i~LVGKGiTFDtGG~~lKp 98 (311)
T PF00883_consen 19 TFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPIALVGKGITFDTGGLSLKP 98 (311)
T ss_dssp HHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEEEEEEEEEEEEE-TTSSSC
T ss_pred HHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccEEEEcceEEEecCCccCCC
Confidence 467889999999999886521 1 11 344455543 23455555442 222 11
Q ss_pred CCC----ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 56 DAG----IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 56 ~~G----~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
.++ .+|| +|-|+.+.+++++.+.+ ++-+|..+.-..|-
T Consensus 99 ~~~M~~Mk~DM-~GAAaV~ga~~aia~lk----~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 99 SGGMEGMKYDM-GGAAAVLGAMRAIAKLK----LPVNVVAVLPLAEN 140 (311)
T ss_dssp STTGGGGGGGG-HHHHHHHHHHHHHHHCT-----SSEEEEEEEEEEE
T ss_pred CcchhhcccCc-chHHHHHHHHHHHHHcC----CCceEEEEEEcccc
Confidence 111 2455 46677889999999875 45778877776765
No 89
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=56.00 E-value=34 Score=32.66 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEE------e---------Ccc-cEEEEecCCC--CCCCEEEEecccccc
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWV------D---------HLG-NVHGRVEGLN--ASAQALLIGSHLDTV 54 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~------d---------~~~-nvia~~~g~~--~~~~~vll~aH~DtV 54 (275)
|+.++.+..++++.|.+.||.--. + ..+ +|+|.+=|.+ +..+--++++|.|+-
T Consensus 20 spTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaHtDSP 90 (437)
T COG1362 20 SPTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAHTDSP 90 (437)
T ss_pred CCChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEeecCCC
Confidence 678899999999999999984211 1 123 5777775654 234566789999995
No 90
>PRK02256 putative aminopeptidase 1; Provisional
Probab=54.85 E-value=20 Score=34.74 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=33.4
Q ss_pred EEeccccccCCCCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 023912 46 LIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (275)
Q Consensus 46 ll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~ 99 (275)
+++.+=|-+ .+.+.|+..++.+++++++.+. .+...++++++..||.
T Consensus 246 ~~G~~~efI-~s~rLDNr~~~~~~leal~~~~------~~~~~~~~~~~dqEEV 292 (462)
T PRK02256 246 DVGLDRSLI-GAYGQDDRVCAYTSLEALLELE------NPEKTAVVLLVDKEEI 292 (462)
T ss_pred eecccccee-eccccccHHHHHHHHHHHHhcc------cCCCeEEEEEEccccc
Confidence 344443333 2467899999999888887553 2456789999999995
No 91
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=54.09 E-value=1.6e+02 Score=29.37 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCeEE-E-e-------CcccEEEEecCCCCCCCEEEEecccc----ccC---C--------CC-----
Q 023912 8 AGNLIRQWMEDAGLRTW-V-D-------HLGNVHGRVEGLNASAQALLIGSHLD----TVV---D--------AG----- 58 (275)
Q Consensus 8 ~~~~i~~~l~~~G~~v~-~-d-------~~~nvia~~~g~~~~~~~vll~aH~D----tVp---~--------~G----- 58 (275)
.++++.+.+.+.|++++ + + .++-+++.=+|+.. .|.++...+.= .-| + ||
T Consensus 234 ~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~-pPrli~L~Y~g~~~~~~~iaLVGKGITFDSGGisLKP 312 (569)
T PTZ00412 234 YAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRH-EPYLVVFEYIGNPRSSAATALVGKGVTFDCGGLNIKP 312 (569)
T ss_pred HHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCC-CCEEEEEEeCCCCCCCCcEEEEcCceEEcCCCCCCCC
Confidence 45566666777899885 3 2 23457777777643 35555555431 111 1 11
Q ss_pred -------ccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 59 -------IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 59 -------~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
.+|| +|-|+.|++++++.+.+ ++.+|..+.-..|-
T Consensus 313 ~~~M~~MK~DM-gGAAaVlga~~AiA~Lk----lpvnVv~iiplaEN 354 (569)
T PTZ00412 313 YGSMETMHSDM-MGAATVMCTLKAIAKLQ----LPVNVVAAVGLAEN 354 (569)
T ss_pred ccChhhhhccc-hhHHHHHHHHHHHHHcC----CCeEEEEEEEhhhc
Confidence 2465 46677889999998875 45777776666665
No 92
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=51.79 E-value=45 Score=32.71 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=57.6
Q ss_pred ccEEEEecC-----CCC-CCCEEEEeccccccCC-----CCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCC
Q 023912 29 GNVHGRVEG-----LNA-SAQALLIGSHLDTVVD-----AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDE 97 (275)
Q Consensus 29 ~nvia~~~g-----~~~-~~~~vll~aH~DtVp~-----~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dE 97 (275)
.|+|..++. +.+ ..+.++..+-||+--. .|+.--..++.+.|+|+++|++...-+.++++|.|+|+-+|
T Consensus 158 ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ge 237 (596)
T KOG2657|consen 158 YNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFNGE 237 (596)
T ss_pred ccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEeecc
Confidence 478887642 222 2467888999998642 25544667888899999999876432246899999999998
Q ss_pred CCCCCCCCcccchhhhc
Q 023912 98 EGVRFQSTFLGSAALAG 114 (275)
Q Consensus 98 E~~~~~~~~~Gs~~~~~ 114 (275)
=. +.+||+.++-
T Consensus 238 t~-----~ylgS~r~~y 249 (596)
T KOG2657|consen 238 TL-----DYLGSGRAAY 249 (596)
T ss_pred ee-----eeccchhhhh
Confidence 84 5689886664
No 93
>PRK02813 putative aminopeptidase 2; Provisional
Probab=47.38 E-value=57 Score=31.31 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-E-Ee-----C--------cc-cEEEEecCCCCC--CCEEEEeccccccC
Q 023912 2 SPASVRAGNLIRQWMEDAGLRT-W-VD-----H--------LG-NVHGRVEGLNAS--AQALLIGSHLDTVV 55 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v-~-~d-----~--------~~-nvia~~~g~~~~--~~~vll~aH~DtVp 55 (275)
|+.++.+.+++++.|++.||.- . .+ . .+ .++|..-|+.+. ..--++.||+|+..
T Consensus 18 s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP~ 89 (428)
T PRK02813 18 SPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSPG 89 (428)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCCC
Confidence 5678999999999999999952 1 11 0 11 477766554431 23668899999964
No 94
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=46.13 E-value=61 Score=31.48 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-EEe-----C---------cc-cEEEEecCCC---CCCCEEEEeccccccC
Q 023912 2 SPASVRAGNLIRQWMEDAGLRT-WVD-----H---------LG-NVHGRVEGLN---ASAQALLIGSHLDTVV 55 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v-~~d-----~---------~~-nvia~~~g~~---~~~~~vll~aH~DtVp 55 (275)
|+.++.+.+++++.|++.||.- ... . .+ .++|..-|+. +...--++++|.|+-.
T Consensus 19 s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDsP~ 91 (465)
T PTZ00371 19 TGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDSPC 91 (465)
T ss_pred CCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccCCC
Confidence 5678999999999999999952 111 0 11 4666654543 2224568899999854
No 95
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=42.02 E-value=1.9e+02 Score=28.47 Aligned_cols=87 Identities=15% Similarity=-0.004 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCeEEEe--------CcccEEEEecCCCCCCCEEEEeccccccCCC--------------Cc-----
Q 023912 7 RAGNLIRQWMEDAGLRTWVD--------HLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------GI----- 59 (275)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d--------~~~nvia~~~g~~~~~~~vll~aH~DtVp~~--------------G~----- 59 (275)
..++++.+++...|+.+++. ..+.+++.-+++. ..|.++..+|..+=+.. |.
T Consensus 210 ~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~-~pP~ll~lsY~g~~~~~~~i~lvGKGvtfDsGGl~iK~ 288 (513)
T KOG2597|consen 210 QFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASC-EPPRLLELSYKGTSGADKTILLVGKGVTFDSGGLSIKP 288 (513)
T ss_pred HHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccC-CCCEEEEEEEcCCCCCcceEEEEecceEEecCcccccc
Confidence 45788888999999876542 1234555545553 34677777777774421 22
Q ss_pred --------cCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 023912 60 --------FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (275)
Q Consensus 60 --------~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~ 99 (275)
.|| +|-|+.+.+++++.+.+ |+-++.+++--.|-.
T Consensus 289 ~~~M~~mr~dm-~GAA~v~~~~~a~~~l~----~~in~~~v~plcENm 331 (513)
T KOG2597|consen 289 KTGMDGMRRDM-GGAAVVLGAFRAAAQLS----LPINVHAVLPLCENM 331 (513)
T ss_pred CCChhhhhhhc-cccHHHHHHHHHHHhcC----CCCceEEEEeeeccC
Confidence 244 36677889999988875 457788877667653
No 96
>PRK02256 putative aminopeptidase 1; Provisional
Probab=40.15 E-value=78 Score=30.74 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCeE-E-EeC-----------cc-cEEEEecCCCC-CCCEEEEeccccccC
Q 023912 2 SPASVRAGNLIRQWMEDAGLRT-W-VDH-----------LG-NVHGRVEGLNA-SAQALLIGSHLDTVV 55 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v-~-~d~-----------~~-nvia~~~g~~~-~~~~vll~aH~DtVp 55 (275)
|+..+.+.+++++.|++.||.- . .+. .+ .++|..-|+.+ ...--++++|.|+-.
T Consensus 38 sptp~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP~ 106 (462)
T PRK02256 38 CKTEREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSPR 106 (462)
T ss_pred CCCHHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCCC
Confidence 4567889999999999999952 1 111 12 36766655543 123458899999964
No 97
>PRK06778 hypothetical protein; Validated
Probab=37.62 E-value=63 Score=29.29 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=30.9
Q ss_pred CEEEEeccccccCCC-CccCC-hHHHHHHHHHHHHHHHcCC
Q 023912 43 QALLIGSHLDTVVDA-GIFDG-SLGIITAISALKVLKSTGK 81 (275)
Q Consensus 43 ~~vll~aH~DtVp~~-G~~D~-~~gvaa~l~a~~~L~~~~~ 81 (275)
..|.+.||.|.+|.. +.+|+ ..+.+=+..++++|.+.|+
T Consensus 183 ~~I~V~GHTD~~p~~~~~~sNweLS~~RA~~V~~~L~~~Gv 223 (289)
T PRK06778 183 NKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGM 223 (289)
T ss_pred CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 478999999999974 34554 5677777889999999887
No 98
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=35.71 E-value=1.4e+02 Score=26.26 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=38.6
Q ss_pred EEEEeccccccCCCCccCC--hHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 44 ALLIGSHLDTVVDAGIFDG--SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 44 ~vll~aH~DtVp~~G~~D~--~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
.|.+.||.|.+|..+.+-. ..+.+=+..++++|.+.|. .+...+.+....|-+
T Consensus 165 ~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~g~--~~~~~~~~~G~gd~~ 219 (244)
T COG1360 165 NIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLINGGL--VEAKRLSVVGYADTR 219 (244)
T ss_pred eEEEEeCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHcCC--CCcceEEEEeccccc
Confidence 8999999999998755433 3566667788999988774 455666666665555
No 99
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=35.48 E-value=42 Score=32.26 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEE-E-e-----C--------c-ccEEEEecCCC--CCCCEEEEeccccccC
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTW-V-D-----H--------L-GNVHGRVEGLN--ASAQALLIGSHLDTVV 55 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~-~-d-----~--------~-~nvia~~~g~~--~~~~~vll~aH~DtVp 55 (275)
|+.++.+.++++++|++.||.-- . + + . .+++|..-|.. ....--++++|.|+-.
T Consensus 5 spT~~Hav~~~~~~L~~~GF~eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP~ 76 (432)
T PF02127_consen 5 SPTPFHAVANAKERLEKAGFTELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSPC 76 (432)
T ss_dssp TSSHHHHHHHHHHHHHHTTHEESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---SE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCCC
Confidence 56789999999999999998521 0 0 0 1 23666543432 2223557899999953
No 100
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=34.69 E-value=84 Score=23.22 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeCcccEE
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVH 32 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d~~~nvi 32 (275)
+.||..++.||.+.+++.|+++..-...++-
T Consensus 10 ~~ED~~t~~yL~~~a~qaG~~~~~~~i~~l~ 40 (97)
T PF03738_consen 10 YPEDRGTVQYLMDTARQAGLDTRFIPIEDLG 40 (97)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEEETTTTEE
T ss_pred ChHHHHHHHHHHHHHHHCCCCeEEechHheE
Confidence 4689999999999999999998765555643
No 101
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=29.98 E-value=1.8e+02 Score=25.64 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred CEEEEeccccccCCC--Ccc--CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 43 QALLIGSHLDTVVDA--GIF--DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 43 ~~vll~aH~DtVp~~--G~~--D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
..|.+.||.|..|.. +.+ .-..+..=+..++++|.+.+. .+...|.+....+..
T Consensus 160 ~~i~I~GhTD~~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~g~--~~~~ri~~~G~G~~~ 217 (252)
T PRK06667 160 RNFRIEGHTDNVDVNPEGPWKSNWELSGARAVNMLEYILNYGD--QSESWFQVSGFAGSR 217 (252)
T ss_pred ceEEEEEeCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCC--CCcceEEEEEECCCC
Confidence 479999999999864 332 334556667788999998886 445667776666554
No 102
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=28.44 E-value=1.6e+02 Score=23.07 Aligned_cols=53 Identities=23% Similarity=0.173 Sum_probs=36.3
Q ss_pred CEEEEeccccccCCC-Ccc--CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 43 QALLIGSHLDTVVDA-GIF--DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 43 ~~vll~aH~DtVp~~-G~~--D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
..|.+.||.|..+.+ +.+ ....+..=+..+..+|.+.|+ . ...|.+....+.+
T Consensus 61 ~~i~I~GhTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi--~-~~ri~~~g~G~~~ 116 (137)
T TIGR03350 61 GRITVVGHTDNVPIRTSRFPSNWHLSEARAKAVADVLAQGGV--P-AGRVRAEGRGDSE 116 (137)
T ss_pred CeEEEEEecCCCCCccCCcccHHHHHHHHHHHHHHHHHHcCC--C-HHHEEEEEECCCC
Confidence 579999999999863 233 344566667788899998886 3 4556665554443
No 103
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=28.22 E-value=1.3e+02 Score=23.28 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEe
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWVD 26 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~d 26 (275)
+|..|....+-..+.|+++||+++..
T Consensus 61 l~~~e~~~l~~~~~~l~~~Gf~~~~~ 86 (136)
T smart00853 61 LSPEEAALLEEHQELLARLGFELEIF 86 (136)
T ss_pred cCHHHHHHHHHHHHHHHHcCeEEEcc
Confidence 47788888888899999999998754
No 104
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=26.90 E-value=2e+02 Score=26.69 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=55.4
Q ss_pred HHHHcCCeEEEeC---cccE-EE--EecCCCCCCCEEEEeccccccCCCCccCChHHHHHHHHHHHHHHHcCCCCCCCCC
Q 023912 15 WMEDAGLRTWVDH---LGNV-HG--RVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRP 88 (275)
Q Consensus 15 ~l~~~G~~v~~d~---~~nv-ia--~~~g~~~~~~~vll~aH~DtVp~~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~ 88 (275)
.|++=-++|.+|. -|++ ++ ..+|+. ...|+|.+|+=+- .=+.|..+|+|.+...+++|+.. +.+.+
T Consensus 147 kl~dgdyeVvIDae~~dG~L~ygefi~rg~~--~~eiLlst~lCHP--SmaNdn~SG~all~~lak~l~~~----ktrys 218 (435)
T COG4310 147 KLEDGDYEVVIDAEHEDGSLDYGEFIHRGTS--KDEILLSTYLCHP--SMANDNLSGLALLTFLAKALKSL----KTRYS 218 (435)
T ss_pred HhhcCCeEEEEecccccCceehhheeccCCc--cceeeeeecccCh--hhccCccchHHHHHHHHHHHHhc----cceee
Confidence 3455456776663 3454 22 235653 4789999998653 34789999999888888899876 45677
Q ss_pred EEEEEecCCCCCCCCCCcccchhhhc
Q 023912 89 VEVIAFSDEEGVRFQSTFLGSAALAG 114 (275)
Q Consensus 89 i~li~~~dEE~~~~~~~~~Gs~~~~~ 114 (275)
.+|+|-|. -.||-.+..
T Consensus 219 YRfvf~P~---------TiGsi~wLs 235 (435)
T COG4310 219 YRFVFAPE---------TIGSIVWLS 235 (435)
T ss_pred EEEEeccc---------ccchhhhHh
Confidence 88888664 257765553
No 105
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=25.71 E-value=1.6e+02 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEE
Q 023912 1 MSPASVRAGNLIRQWMEDAGLRTWV 25 (275)
Q Consensus 1 ~S~~E~~~~~~i~~~l~~~G~~v~~ 25 (275)
+|..|....+-..+.|+++||+++.
T Consensus 60 ls~~e~~~l~~~~~~L~~~Gf~~~~ 84 (144)
T PF08676_consen 60 LSPQEAELLEENKEELEKLGFEIEE 84 (144)
T ss_dssp --HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4778899999999999999999875
No 106
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=24.68 E-value=2.1e+02 Score=27.46 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=37.6
Q ss_pred EEEEeccccccCCC-Cc--cCC-hHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 44 ALLIGSHLDTVVDA-GI--FDG-SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 44 ~vll~aH~DtVp~~-G~--~D~-~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
.|.+.||.|.+|.. |. +++ .++.+=+..+.++|...|+ .+.+-+.++...+..
T Consensus 188 ~I~I~GHTD~~P~~~g~~~~SNWeLSaaRA~aV~r~Li~~Gv--~~~ril~v~G~Gd~~ 244 (421)
T PRK12799 188 KLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGL--DEGKILRVVGMASTM 244 (421)
T ss_pred cEEEEEEcCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHcCC--CcccEEEEEEeCCCC
Confidence 69999999999974 32 322 3555667778899999887 554445677777665
No 107
>PRK09039 hypothetical protein; Validated
Probab=24.58 E-value=1.5e+02 Score=27.45 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=35.9
Q ss_pred EEEEeccccccCCCC--ccC--ChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 44 ALLIGSHLDTVVDAG--IFD--GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 44 ~vll~aH~DtVp~~G--~~D--~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
.|.+.||.|.+|..| .++ -..+..=+..+.++|.+.|+ + ...|....+.+.+
T Consensus 264 ~I~I~GHTD~~p~~~~g~~~~N~~LS~~RA~aV~~~Li~~Gi--~-~~ri~~~G~G~~~ 319 (343)
T PRK09039 264 VLRVDGHTDNVPLSGTGRFRDNWELSSARAISVVKFLIALGV--P-ADRLAAAGFGEFQ 319 (343)
T ss_pred eEEEEEecCCCCccCCCCcccHHHHHHHHHHHHHHHHHHCCC--C-HHHeEEEEeCCcC
Confidence 477999999998753 332 23455567788999998887 4 4457665555544
No 108
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=24.44 E-value=56 Score=31.27 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.7
Q ss_pred CEEEEeccccccCCC
Q 023912 43 QALLIGSHLDTVVDA 57 (275)
Q Consensus 43 ~~vll~aH~DtVp~~ 57 (275)
.++.|.||+|.||.-
T Consensus 62 ~~~~L~a~~d~V~~i 76 (414)
T COG2195 62 VPAVLQAHLDMVPEI 76 (414)
T ss_pred eeEEeeccccccccc
Confidence 578899999999954
No 109
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=22.95 E-value=1.1e+02 Score=29.64 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEE-ecCCCCCCCCCCcccchhhhccc
Q 023912 57 AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIA-FSDEEGVRFQSTFLGSAALAGIL 116 (275)
Q Consensus 57 ~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~-~~dEE~~~~~~~~~Gs~~~~~~~ 116 (275)
+.+.|+..++.++|+++..+...-. .....+.+++ +.-||. |..|++.....+
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~--~~~~~~~v~~~~d~EEV-----Gs~ga~GA~s~~ 300 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLG--ENSSNIRMVCLFDHEEV-----GSSSSQGAGSSL 300 (465)
T ss_pred EecchhHHHHHHHHHHHHhcccccc--CCCCceEEEEEECCcCC-----CCCcchhccccc
Confidence 4678999999998888876643100 0123355544 889995 344555544443
No 110
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=22.53 E-value=1.9e+02 Score=26.63 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=37.4
Q ss_pred CEEEEeccccccCCCC-c-c--CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 43 QALLIGSHLDTVVDAG-I-F--DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 43 ~~vll~aH~DtVp~~G-~-~--D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
..|.+.||.|.+|..+ . + .-..+.+=+..+.++|.+.|+ .+++-+.+....+..
T Consensus 192 ~~I~I~GHTD~~p~~~g~~~~sNweLS~aRA~aV~~~L~~~Gi--~~~ri~~~~G~gd~~ 249 (317)
T PRK09041 192 NRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGM--DEGKVLRVVGLASTM 249 (317)
T ss_pred CeEEEEEecCCCcccCCCccccHHHHHHHHHHHHHHHHHHcCC--ChhHeEEEEEeCCCC
Confidence 4699999999999753 2 2 345667777889999999887 554423565555544
No 111
>PRK09040 hypothetical protein; Provisional
Probab=20.86 E-value=2.4e+02 Score=24.21 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=35.8
Q ss_pred EEEEeccccccCCC---Ccc--CChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 023912 44 ALLIGSHLDTVVDA---GIF--DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (275)
Q Consensus 44 ~vll~aH~DtVp~~---G~~--D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE 98 (275)
.|.+.||.|..|.. +.+ ....+..=+..++++|.+.|+ +...|....+.++.
T Consensus 124 ~V~IeGHTD~~~~~~~~~~y~~N~~LS~~RA~aV~~~L~~~Gi---~~~ri~~~G~G~~~ 180 (214)
T PRK09040 124 ILMVSGFTDDQPVRAGNRRFADNWELSAQRALTVTRALIDAGV---PASSVFAAAFGSEQ 180 (214)
T ss_pred eEEEEEEcCCCCccccccccccHHHHHHHHHHHHHHHHHHcCC---CHHHEEEEEeCCCC
Confidence 48899999999864 223 334566667888999998886 44556665555443
No 112
>PRK02813 putative aminopeptidase 2; Provisional
Probab=20.48 E-value=1.1e+02 Score=29.31 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCccCChHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 023912 57 AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (275)
Q Consensus 57 ~G~~D~~~gvaa~l~a~~~L~~~~~~~~~~~~i~li~~~dEE~ 99 (275)
+.+.|+..++.++++++..+. . ...++++|+.-||.
T Consensus 230 s~~lDnr~~~~~~l~al~~~~------~-~~~~~~~~~d~EEV 265 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAA------S-DATNVLAAFDHEEV 265 (428)
T ss_pred EecchhHHHHHHHHHHHHhcC------C-CCeEEEEEEecCcc
Confidence 467899999988888876542 2 45789999999995
No 113
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=20.26 E-value=22 Score=24.14 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=9.1
Q ss_pred EeccccccCCC
Q 023912 47 IGSHLDTVVDA 57 (275)
Q Consensus 47 l~aH~DtVp~~ 57 (275)
+++|+|+|.+.
T Consensus 6 vR~HLD~vy~~ 16 (58)
T PF07577_consen 6 VRAHLDVVYDQ 16 (58)
T ss_pred HHHHhhceecC
Confidence 47899999875
No 114
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=20.07 E-value=35 Score=24.96 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEe
Q 023912 2 SPASVRAGNLIRQWMEDAGLRTWVD 26 (275)
Q Consensus 2 S~~E~~~~~~i~~~l~~~G~~v~~d 26 (275)
+.++.+.+++|.+.|++.|+++..|
T Consensus 6 ~~~D~~~a~~l~~~L~~~g~~v~~d 30 (102)
T PF13676_consen 6 SSEDREFAERLAERLESAGIRVFLD 30 (102)
T ss_dssp EGGGCCCHHHHHHHHHHTT--EE-G
T ss_pred cCCcHHHHHHHHHHHhhcCCEEEEE
Confidence 4566778999999999999998876
Done!