BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023913
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
pdb|2HF9|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
Length = 226
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 88 GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
G +G+GKT L+ L L+DKY +A + D+ K D E + ++GA ++ + TG
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
H D + LE+L NL + DLL E+ G+ + A+F I+ I G D
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRM 246
I + PGI + ADL+VINK DLA A+GAD+ ME DA R+
Sbjct: 156 IEKH--PGIMKTADLIVINKIDLADAVGADIKKMENDAKRI 194
>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
pdb|2HF8|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
Length = 226
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 13/161 (8%)
Query: 88 GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
G +G+GKT L+ L L+DKY +A + D+ K D E ++GA ++ + TG
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERXEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
H D + LE+L NL + DLL E+ G+ + A+F I+ I G D
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRM 246
I + PGI + ADL+VINK DLA A+GAD+ E DA R+
Sbjct: 156 IEKH--PGIXKTADLIVINKIDLADAVGADIKKXENDAKRI 194
>pdb|2WSM|A Chain A, Crystal Structure Of Hydrogenase Maturation Factor Hypb
From Archaeoglobus Fulgidus
pdb|2WSM|B Chain B, Crystal Structure Of Hydrogenase Maturation Factor Hypb
From Archaeoglobus Fulgidus
Length = 221
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
V I G +G+GKT L+ + + ++ + A+ D+ +K D E + R G E A+ T
Sbjct: 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAE----AIST 88
Query: 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD-YIIYIIDVS 202
G H D + L++ S+ DLLL E+ G NL +L + Y + ++ V+
Sbjct: 89 GKECHL----DAHMIYHRLKKFSD---CDLLLIENVG-NLICPVDFDLGENYRVVMVSVT 140
Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDA 243
GD + K ADL+VINK LA A+GAD+ M+ DA
Sbjct: 141 EGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADA 181
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139
AF VG+ GP G GK+ + K L ++ + L+ + D + G G+L ++ R
Sbjct: 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG------GSLLGDKTR 127
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL---------AANFS-R 189
E +A IR S G L ++ +LLCE G ++ + F+
Sbjct: 128 MTELSRDMNAYIRP--SPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVA 185
Query: 190 ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 227
++ D + ++ +GGD++ I ADL+ + K+D
Sbjct: 186 DMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSD 223
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA-AVTNDIFTKE--DGEFLM 128
I S+ RA V + GP GTGKTAL LA+ + L K V +++++ E E LM
Sbjct: 56 IKSKKMAGRA--VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113
Query: 129 RN 130
N
Sbjct: 114 EN 115
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
E+A G T K L ++ F+RD L V ++ KED + L+R L + +
Sbjct: 60 EKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDSDTLVR-CPLTDPEV 118
Query: 139 RAVETGGCPHAAIREDI 155
+ GC + +D+
Sbjct: 119 TSYSLKGCQGKPLPKDL 135
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
RA VGI G G GK+ + AL L ++ + +A + D + G G++ ++
Sbjct: 55 RAMHVGITGVPGVGKSTSIEALGMHLIEQGHRVAVLAVDPSSVRSG------GSILGDKT 108
Query: 139 RAVETGGCPHAAIREDISI-NLGPLEELSN----LFKA---DLLLCESGGDNLAANFSRE 190
R P A +R S LG + + + L +A D++L E+ G + +
Sbjct: 109 RMARLAVHPDAYVRPSPSSGTLGGVAKATRETIVLLEAAGFDVVLVETVGVGQSEVTVAD 168
Query: 191 LADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME 240
+ D +++ GD++ + AD++V+NK D A+ A A E
Sbjct: 169 MVDTFVFLTLARTGDQLQGIKKGVLELADIVVVNKADGEHAVEARKAARE 218
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 118 IFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE 164
+F KE G F G++P E + GG + E++S++ LEE
Sbjct: 22 VFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEE 68
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
E+A G T K L ++ F+RD L V ++ KED + L+R L + +
Sbjct: 85 EKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR-CPLTDPEV 143
Query: 139 RAVETGGCPHAAIREDI 155
GC + +D+
Sbjct: 144 TNYSLKGCQGKPLPKDL 160
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142
+G+ G +GTGK+ +C+ L++KY V D E L E + + VE
Sbjct: 14 VIGVTGKIGTGKS----TVCEILKNKYGAHVVNVDRIGHE---------VLEEVKEKLVE 60
Query: 143 TGGCPHAAIREDISINLGPL-----EELSNLFKADLLL 175
G ++ ED +N L E NL K +LL+
Sbjct: 61 LFG---GSVLEDGKVNRKKLAGIVFESRENLKKLELLV 95
>pdb|1ZRT|D Chain D, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|Q Chain Q, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 258
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 175 LCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 234
L + GG L F RE A + IID G++ RK + D+ T + +G
Sbjct: 48 LADDGGPQLDPTFVREYAAGLDTIIDKDSGEERDRK------ETDMF---PTRVGDGMGP 98
Query: 235 DLAVMER 241
DL+VM +
Sbjct: 99 DLSVMAK 105
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 15/169 (8%)
Query: 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139
A VGI G G GK+ + AL L + + +A + D + G G++ ++ R
Sbjct: 57 AMHVGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTRTG------GSILGDKTR 110
Query: 140 AVETGGCPHAAIRED-ISINLGPLEELSN----LFKA---DLLLCESGGDNLAANFSREL 191
P A IR S LG + + + L +A D++L E+ G + +
Sbjct: 111 MARLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVGQSEVTVAGM 170
Query: 192 ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME 240
D +++ GD++ + AD++V+NK D A+ A A E
Sbjct: 171 VDTFVFLTLARTGDQLQGIKKGVLELADVIVVNKADGEHAVEAKAAARE 219
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 57 EPIYSPGYFSRRAPPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115
+ +++P Y PI++ N N T G +G+G AL +AL K + +S+ A+
Sbjct: 22 KTLFAPIY------PIIAENIINRFGITAGTCIDIGSGPGALSIALAK--QSDFSIRALD 73
Query: 116 NDIFTKEDGEFLMRN--GALPEERIRAVETGGCPHAAIRE---DISINLGPL---EELSN 167
F+K E ++N A +RI+ V+ G + I + D+ ++ G + E+++
Sbjct: 74 ---FSKHXNEIALKNIADANLNDRIQIVQ-GDVHNIPIEDNYADLIVSRGSVFFWEDVAT 129
Query: 168 LFKADLLLCESGG 180
F+ + +SGG
Sbjct: 130 AFREIYRILKSGG 142
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139
+ F +GI G +GKT L AL + L ++ +L + D + K+ G + EER+R
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLGERVAL--LPMDHYYKDLGHLPL------EERLR 56
>pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
pdb|3PFO|B Chain B, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
Length = 433
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
A + + + D + G P+E R +E C A D ++ P E + + F+AD
Sbjct: 286 ASSTAAWCELDCRLGLLTGDTPQEAXRGIEK--CLADAQATDSFLSENPAELVWSGFQAD 343
Query: 173 LLLCESGG 180
+CE GG
Sbjct: 344 PAVCEPGG 351
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERI 138
+ F +GI G +GKT L L K L + + ++ D F K + E +NG L + +
Sbjct: 20 KTFIIGISGVTNSGKTTLAKNLQKHLPN---CSVISQDDFFKPESEIETDKNGFLQYDVL 76
Query: 139 RAV 141
A+
Sbjct: 77 EAL 79
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 185
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 305 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 349
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 84 VGIGGPVGTGKTALMLALCKFLRDKYSLA-AVTNDIFTKE--DGEFLMRN 130
V + GP GTGKTAL LA+ + L K V +++++ E E L N
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXEN 129
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 185
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 304 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 348
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 185
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 305 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 349
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide (Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERI 138
+ F +GI G +GKT L L K L + + ++ D F K + E +NG L + +
Sbjct: 2 KTFIIGISGVTNSGKTTLAKNLQKHLPN---CSVISQDDFFKPESEIETDKNGFLQYDVL 58
Query: 139 RAV 141
A+
Sbjct: 59 EAL 61
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%)
Query: 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
RA VGI G G GK+ + AL L + +A + D + G G++ ++
Sbjct: 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG------GSILGDKT 107
Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL----------AANFS 188
R +A IR S + G L ++ + +LLCE+ G ++ +
Sbjct: 108 RMARLAIDRNAFIRP--SPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV 165
Query: 189 RELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 227
+L D+ + ++ GD++ AD++ +NK D
Sbjct: 166 ADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKAD 204
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Query: 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139
A VGI G G GK+ + AL L ++ + +A + D + G G++ ++ R
Sbjct: 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTG------GSILGDKTR 132
Query: 140 AVETGGCPHAAIRED-ISINLGPL----EELSNLFKA---DLLLCESGGDNLAANFSREL 191
P+A IR S LG + E L +A D++L E+ G + +
Sbjct: 133 MARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANM 192
Query: 192 ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDA 243
D + + GD++ + AD++V+NK D A LA E A
Sbjct: 193 VDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSA 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,098,294
Number of Sequences: 62578
Number of extensions: 347171
Number of successful extensions: 891
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 30
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)