Query 023913
Match_columns 275
No_of_seqs 406 out of 3539
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 100.0 9.6E-30 2.1E-34 223.9 9.5 145 65-209 12-173 (258)
2 TIGR00101 ureG urease accessor 100.0 2.7E-28 5.9E-33 209.3 12.0 189 83-271 3-192 (199)
3 COG0378 HypB Ni2+-binding GTPa 100.0 2E-28 4.3E-33 204.9 9.0 180 82-271 14-197 (202)
4 COG1126 GlnQ ABC-type polar am 99.9 2.2E-28 4.9E-33 207.5 8.3 145 64-208 11-170 (240)
5 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.6E-27 3.4E-32 209.1 11.1 148 55-209 8-174 (254)
6 PRK10463 hydrogenase nickel in 99.9 1.8E-26 3.9E-31 206.6 10.5 198 59-270 84-284 (290)
7 COG1125 OpuBA ABC-type proline 99.9 6.3E-26 1.4E-30 196.6 11.6 141 64-210 10-171 (309)
8 COG1131 CcmA ABC-type multidru 99.9 7.4E-26 1.6E-30 205.0 11.0 146 64-210 13-172 (293)
9 COG1116 TauB ABC-type nitrate/ 99.9 7.2E-26 1.6E-30 196.6 9.4 142 64-210 12-166 (248)
10 COG2884 FtsE Predicted ATPase 99.9 7.4E-26 1.6E-30 188.5 8.6 151 55-208 5-171 (223)
11 COG4555 NatA ABC-type Na+ tran 99.9 1.6E-25 3.4E-30 188.2 10.5 186 64-254 10-214 (245)
12 KOG0058 Peptide exporter, ABC 99.9 4.8E-25 1E-29 213.9 13.6 160 50-210 461-640 (716)
13 COG2274 SunT ABC-type bacterio 99.9 5.2E-25 1.1E-29 218.9 14.2 182 45-229 462-685 (709)
14 COG3638 ABC-type phosphate/pho 99.9 3.3E-25 7.1E-30 190.4 10.7 151 56-209 8-182 (258)
15 COG1127 Ttg2A ABC-type transpo 99.9 3E-25 6.5E-30 191.1 10.0 146 64-209 17-180 (263)
16 COG1136 SalX ABC-type antimicr 99.9 8.1E-25 1.8E-29 189.3 11.2 140 69-208 19-176 (226)
17 COG3842 PotA ABC-type spermidi 99.9 4.4E-25 9.5E-30 202.3 8.1 143 64-208 14-170 (352)
18 COG1135 AbcC ABC-type metal io 99.9 1E-24 2.2E-29 193.8 9.8 141 69-209 20-176 (339)
19 PRK13537 nodulation ABC transp 99.9 6.6E-24 1.4E-28 193.5 13.4 145 65-210 17-174 (306)
20 COG3839 MalK ABC-type sugar tr 99.9 9.5E-25 2.1E-29 199.1 6.8 143 64-208 12-167 (338)
21 TIGR00960 3a0501s02 Type II (G 99.9 2.2E-24 4.8E-29 186.7 7.9 151 56-209 6-173 (216)
22 PRK13536 nodulation factor exp 99.9 1.3E-23 2.8E-28 194.0 13.3 146 64-210 50-208 (340)
23 COG1122 CbiO ABC-type cobalt t 99.9 3.5E-24 7.6E-29 187.7 8.9 152 55-210 7-174 (235)
24 cd03261 ABC_Org_Solvent_Resist 99.9 7.5E-24 1.6E-28 185.7 10.4 143 68-210 13-172 (235)
25 COG0523 Putative GTPases (G3E 99.9 3.5E-24 7.5E-29 195.5 8.5 180 82-273 2-199 (323)
26 TIGR01188 drrA daunorubicin re 99.9 1.1E-23 2.3E-28 191.7 11.3 144 65-209 3-159 (302)
27 COG0410 LivF ABC-type branched 99.9 1E-23 2.2E-28 180.9 10.1 142 64-207 12-169 (237)
28 COG1117 PstB ABC-type phosphat 99.9 9.5E-24 2.1E-28 179.0 9.7 147 64-210 16-185 (253)
29 TIGR01166 cbiO cobalt transpor 99.9 2E-23 4.4E-28 177.3 11.8 145 65-209 2-162 (190)
30 cd03225 ABC_cobalt_CbiO_domain 99.9 6.8E-24 1.5E-28 182.9 9.0 142 68-209 14-169 (211)
31 PRK09536 btuD corrinoid ABC tr 99.9 1.3E-23 2.8E-28 197.5 11.1 143 67-209 15-174 (402)
32 TIGR02673 FtsE cell division A 99.9 7.2E-24 1.6E-28 183.1 8.6 143 67-209 14-172 (214)
33 COG1137 YhbG ABC-type (unclass 99.9 1.4E-24 3.1E-29 182.2 3.5 147 64-210 13-175 (243)
34 TIGR02314 ABC_MetN D-methionin 99.9 1.8E-23 3.9E-28 193.1 10.9 141 69-209 19-175 (343)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.2E-23 4.7E-28 180.6 10.6 142 68-209 17-175 (218)
36 TIGR01186 proV glycine betaine 99.9 6.1E-24 1.3E-28 197.4 7.4 146 64-209 2-164 (363)
37 TIGR02868 CydC thiol reductant 99.9 2E-23 4.4E-28 203.1 11.3 147 55-207 338-503 (529)
38 TIGR03522 GldA_ABC_ATP gliding 99.9 5.7E-23 1.2E-27 186.9 13.3 143 67-210 14-169 (301)
39 cd03259 ABC_Carb_Solutes_like 99.9 7.7E-24 1.7E-28 182.9 7.2 140 68-209 13-165 (213)
40 cd03226 ABC_cobalt_CbiO_domain 99.9 1.5E-23 3.2E-28 180.3 8.8 139 68-209 13-161 (205)
41 COG1124 DppF ABC-type dipeptid 99.9 2.5E-23 5.3E-28 179.7 9.7 139 69-208 21-175 (252)
42 cd03265 ABC_DrrA DrrA is the A 99.9 1.1E-23 2.3E-28 183.0 7.6 143 67-210 12-167 (220)
43 cd03256 ABC_PhnC_transporter A 99.9 1.5E-23 3.3E-28 184.2 8.5 142 68-209 14-179 (241)
44 PRK13647 cbiO cobalt transport 99.9 4.5E-23 9.8E-28 185.1 11.5 151 56-209 9-173 (274)
45 TIGR02315 ABC_phnC phosphonate 99.9 2.2E-23 4.7E-28 183.5 9.1 143 67-209 14-180 (243)
46 PRK10908 cell division protein 99.9 1.7E-23 3.7E-28 181.9 8.4 150 57-209 7-172 (222)
47 PRK11650 ugpC glycerol-3-phosp 99.9 3.7E-23 8.1E-28 192.1 11.1 141 67-209 16-169 (356)
48 KOG0057 Mitochondrial Fe/S clu 99.9 3.6E-23 7.8E-28 195.2 10.8 151 55-208 355-521 (591)
49 COG1118 CysA ABC-type sulfate/ 99.9 4.1E-23 8.8E-28 183.4 10.5 143 64-208 11-171 (345)
50 cd03292 ABC_FtsE_transporter F 99.9 2.3E-23 4.9E-28 179.9 8.6 150 57-209 6-171 (214)
51 TIGR02211 LolD_lipo_ex lipopro 99.9 1.8E-23 3.8E-28 181.6 7.9 141 69-209 19-176 (221)
52 PRK13650 cbiO cobalt transport 99.9 7.2E-23 1.6E-27 184.3 12.0 153 56-209 9-175 (279)
53 COG4152 ABC-type uncharacteriz 99.9 8.2E-23 1.8E-27 176.3 11.6 139 64-209 11-165 (300)
54 TIGR01288 nodI ATP-binding ABC 99.9 4.8E-23 1E-27 187.5 10.2 143 66-209 15-170 (303)
55 cd03263 ABC_subfamily_A The AB 99.9 2.7E-23 5.8E-28 180.3 8.1 141 68-209 15-168 (220)
56 TIGR03608 L_ocin_972_ABC putat 99.9 2.6E-23 5.6E-28 178.6 7.9 141 68-208 11-168 (206)
57 PRK11629 lolD lipoprotein tran 99.9 2.8E-23 6E-28 182.0 8.2 156 55-210 9-181 (233)
58 PRK13644 cbiO cobalt transport 99.9 8.7E-23 1.9E-27 183.3 11.3 151 56-209 6-171 (274)
59 PRK11174 cysteine/glutathione 99.9 1.2E-22 2.6E-27 200.2 13.2 150 55-209 353-520 (588)
60 cd03219 ABC_Mj1267_LivG_branch 99.9 8.6E-23 1.9E-27 179.0 10.7 143 68-210 13-179 (236)
61 PRK13637 cbiO cobalt transport 99.9 1.1E-22 2.4E-27 183.8 11.7 154 56-209 7-179 (287)
62 cd03224 ABC_TM1139_LivF_branch 99.9 1.1E-22 2.3E-27 176.6 10.8 141 68-209 13-167 (222)
63 COG1132 MdlB ABC-type multidru 99.9 1.6E-22 3.5E-27 198.5 13.2 152 55-209 332-500 (567)
64 cd03262 ABC_HisP_GlnQ_permease 99.9 1.2E-22 2.6E-27 175.3 10.8 142 68-209 13-170 (213)
65 cd03264 ABC_drug_resistance_li 99.9 2.8E-23 6.1E-28 179.1 6.9 140 68-209 13-165 (211)
66 COG0411 LivG ABC-type branched 99.9 3.2E-23 6.9E-28 179.1 7.1 145 64-208 13-183 (250)
67 cd03235 ABC_Metallic_Cations A 99.9 1.1E-22 2.3E-27 175.8 10.3 137 68-209 12-167 (213)
68 cd03258 ABC_MetN_methionine_tr 99.9 4.9E-23 1.1E-27 180.3 8.2 142 69-210 19-176 (233)
69 PRK13635 cbiO cobalt transport 99.9 1.7E-22 3.7E-27 181.9 11.9 152 55-209 9-175 (279)
70 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.8E-23 8.3E-28 185.1 7.5 146 64-209 33-195 (269)
71 cd03266 ABC_NatA_sodium_export 99.9 4.7E-23 1E-27 178.5 7.8 140 69-209 19-171 (218)
72 cd03268 ABC_BcrA_bacitracin_re 99.9 2.9E-23 6.3E-28 178.7 6.4 139 67-210 12-162 (208)
73 PRK13652 cbiO cobalt transport 99.9 1.6E-22 3.5E-27 181.8 11.5 151 56-209 8-172 (277)
74 cd03260 ABC_PstB_phosphate_tra 99.9 6.5E-23 1.4E-27 178.8 8.7 142 68-209 13-176 (227)
75 PRK11153 metN DL-methionine tr 99.9 1.4E-22 2.9E-27 187.6 11.2 141 69-209 19-175 (343)
76 PRK11432 fbpC ferric transport 99.9 8.8E-23 1.9E-27 189.2 9.9 141 67-209 18-171 (351)
77 cd03295 ABC_OpuCA_Osmoprotecti 99.9 5.1E-23 1.1E-27 181.3 7.9 142 68-209 14-170 (242)
78 PRK10851 sulfate/thiosulfate t 99.9 1.4E-22 3E-27 188.1 11.0 141 67-209 14-171 (353)
79 cd03301 ABC_MalK_N The N-termi 99.9 4.2E-23 9E-28 178.3 6.9 140 68-209 13-165 (213)
80 PRK13636 cbiO cobalt transport 99.9 1.8E-22 3.9E-27 182.0 11.3 152 55-209 9-176 (283)
81 TIGR03265 PhnT2 putative 2-ami 99.9 7.7E-23 1.7E-27 189.8 9.1 142 66-209 15-169 (353)
82 cd03218 ABC_YhbG The ABC trans 99.9 1.4E-22 3.1E-27 177.1 10.3 143 68-210 13-169 (232)
83 PRK13632 cbiO cobalt transport 99.9 2E-22 4.3E-27 180.6 11.3 153 55-209 11-177 (271)
84 PRK10575 iron-hydroxamate tran 99.9 4E-23 8.8E-28 184.5 6.6 151 55-209 15-182 (265)
85 PRK10584 putative ABC transpor 99.9 7.1E-23 1.5E-27 178.7 7.7 140 70-209 25-181 (228)
86 cd03296 ABC_CysA_sulfate_impor 99.9 1.3E-22 2.7E-27 178.5 9.3 141 68-210 15-172 (239)
87 PRK13648 cbiO cobalt transport 99.9 3.6E-22 7.8E-27 178.8 12.2 152 55-209 11-177 (269)
88 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.4E-23 9.5E-28 179.1 6.1 137 69-210 18-167 (220)
89 PRK14247 phosphate ABC transpo 99.9 8.1E-22 1.8E-26 174.4 13.9 144 67-210 15-182 (250)
90 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.2E-22 4.7E-27 176.7 10.1 141 68-209 14-167 (236)
91 PRK11000 maltose/maltodextrin 99.9 5.6E-23 1.2E-27 191.8 6.6 141 67-209 15-168 (369)
92 PRK10253 iron-enterobactin tra 99.9 6.6E-23 1.4E-27 183.1 6.7 142 68-209 20-178 (265)
93 cd03269 ABC_putative_ATPase Th 99.9 4.7E-23 1E-27 177.6 5.6 138 68-209 13-163 (210)
94 PRK13634 cbiO cobalt transport 99.9 3.2E-22 7E-27 181.0 11.3 154 56-209 7-180 (290)
95 KOG0055 Multidrug/pheromone ex 99.9 5.9E-22 1.3E-26 202.0 14.4 167 55-225 354-561 (1228)
96 PRK13548 hmuV hemin importer A 99.9 4.1E-22 8.9E-27 177.4 11.5 143 67-209 14-175 (258)
97 PRK13638 cbiO cobalt transport 99.9 3.9E-22 8.4E-27 178.7 11.4 143 67-209 13-171 (271)
98 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.6E-22 7.9E-27 200.0 12.5 149 55-209 455-623 (686)
99 cd03214 ABC_Iron-Siderophores_ 99.9 1.6E-22 3.4E-27 170.7 8.3 117 68-209 12-132 (180)
100 PRK10247 putative ABC transpor 99.9 3.6E-22 7.9E-27 174.2 10.8 142 67-209 19-172 (225)
101 PRK13646 cbiO cobalt transport 99.9 4.4E-22 9.4E-27 179.8 11.6 141 69-209 21-180 (286)
102 PRK11231 fecE iron-dicitrate t 99.9 6.9E-23 1.5E-27 181.9 6.3 143 67-209 14-173 (255)
103 KOG0055 Multidrug/pheromone ex 99.9 6.8E-22 1.5E-26 201.5 14.2 177 51-229 984-1202(1228)
104 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.9E-22 6.4E-27 201.4 11.5 150 55-209 481-650 (710)
105 TIGR03411 urea_trans_UrtD urea 99.9 1.4E-22 3E-27 178.4 8.0 142 68-209 15-178 (242)
106 PRK13641 cbiO cobalt transport 99.9 3.7E-22 8E-27 180.4 11.0 141 69-209 21-180 (287)
107 TIGR01189 ccmA heme ABC export 99.9 1.1E-22 2.3E-27 174.0 7.1 139 67-209 12-162 (198)
108 PRK09452 potA putrescine/sperm 99.9 2.6E-22 5.6E-27 187.5 10.2 143 65-209 24-179 (375)
109 PRK11831 putative ABC transpor 99.9 2.5E-22 5.4E-27 179.8 9.8 143 67-209 19-178 (269)
110 COG4559 ABC-type hemin transpo 99.9 6.7E-22 1.4E-26 167.6 11.7 141 68-208 14-175 (259)
111 PRK14250 phosphate ABC transpo 99.9 3.9E-22 8.4E-27 175.7 10.6 140 67-209 15-166 (241)
112 PRK09493 glnQ glutamine ABC tr 99.9 3.5E-22 7.7E-27 175.7 10.3 142 68-209 14-171 (240)
113 PRK10895 lipopolysaccharide AB 99.9 3.9E-22 8.4E-27 175.5 10.6 143 68-210 16-173 (241)
114 TIGR01193 bacteriocin_ABC ABC- 99.9 3.8E-22 8.3E-27 200.5 11.9 151 55-209 477-646 (708)
115 TIGR03873 F420-0_ABC_ATP propo 99.9 4.4E-22 9.5E-27 176.8 10.8 142 68-209 14-172 (256)
116 COG4988 CydD ABC-type transpor 99.9 9.4E-22 2E-26 187.5 13.7 151 55-209 324-491 (559)
117 PRK13639 cbiO cobalt transport 99.9 5.1E-22 1.1E-26 178.4 11.3 151 56-209 6-172 (275)
118 PRK13651 cobalt transporter AT 99.9 5.4E-22 1.2E-26 180.8 11.5 154 56-209 7-200 (305)
119 PRK13631 cbiO cobalt transport 99.9 6.1E-22 1.3E-26 181.6 11.9 155 55-209 25-211 (320)
120 PRK11264 putative amino-acid A 99.9 5.2E-22 1.1E-26 175.6 11.0 143 68-210 16-180 (250)
121 cd03231 ABC_CcmA_heme_exporter 99.9 1.6E-22 3.4E-27 173.6 7.5 136 68-209 13-160 (201)
122 PRK13538 cytochrome c biogenes 99.9 1.2E-22 2.5E-27 174.7 6.5 140 67-209 13-164 (204)
123 cd03257 ABC_NikE_OppD_transpor 99.9 4.9E-22 1.1E-26 173.1 10.2 141 69-209 19-180 (228)
124 PRK11176 lipid transporter ATP 99.9 8.6E-22 1.9E-26 193.8 13.1 151 55-209 345-515 (582)
125 PRK11124 artP arginine transpo 99.9 1.9E-22 4.1E-27 177.6 7.5 142 68-209 15-176 (242)
126 PRK13540 cytochrome c biogenes 99.9 2.4E-22 5.1E-27 172.3 7.7 138 67-209 13-162 (200)
127 PRK13643 cbiO cobalt transport 99.9 8.2E-22 1.8E-26 178.2 11.5 154 56-209 6-179 (288)
128 COG3840 ThiQ ABC-type thiamine 99.9 4.4E-22 9.6E-27 165.1 8.9 132 76-209 20-164 (231)
129 PRK11300 livG leucine/isoleuci 99.9 1.8E-22 4E-27 178.9 7.1 143 67-209 17-188 (255)
130 PRK11614 livF leucine/isoleuci 99.9 7.7E-22 1.7E-26 173.2 10.9 142 67-209 17-172 (237)
131 PRK11607 potG putrescine trans 99.9 4.2E-22 9.1E-27 186.2 9.6 143 65-209 29-184 (377)
132 PRK13633 cobalt transporter AT 99.9 1E-21 2.2E-26 176.9 11.7 155 55-209 8-179 (280)
133 PRK10070 glycine betaine trans 99.9 2E-22 4.3E-27 189.4 7.4 146 64-209 37-199 (400)
134 PF02492 cobW: CobW/HypB/UreG, 99.9 1.3E-22 2.8E-27 171.1 5.2 164 82-254 1-178 (178)
135 TIGR03375 type_I_sec_LssB type 99.9 1.7E-21 3.7E-26 195.5 14.2 151 55-209 467-636 (694)
136 cd03297 ABC_ModC_molybdenum_tr 99.9 8.9E-22 1.9E-26 170.2 10.6 135 73-209 16-166 (214)
137 TIGR02982 heterocyst_DevA ABC 99.9 9.1E-22 2E-26 171.0 10.6 141 69-209 19-176 (220)
138 TIGR03410 urea_trans_UrtE urea 99.9 2E-22 4.3E-27 176.1 6.5 141 68-210 13-167 (230)
139 TIGR02857 CydD thiol reductant 99.9 9.9E-22 2.1E-26 191.3 12.1 149 55-208 324-492 (529)
140 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.1E-21 2.3E-26 169.3 11.0 135 73-209 16-163 (211)
141 PRK13640 cbiO cobalt transport 99.9 1.5E-21 3.2E-26 176.0 12.3 152 56-209 10-178 (282)
142 PRK13649 cbiO cobalt transport 99.9 1.1E-21 2.3E-26 176.6 11.3 154 56-209 7-180 (280)
143 PRK15112 antimicrobial peptide 99.9 1.3E-21 2.8E-26 175.0 11.6 141 69-209 27-184 (267)
144 PRK11160 cysteine/glutathione 99.9 1.5E-21 3.2E-26 192.0 12.9 150 55-209 342-510 (574)
145 PRK11247 ssuB aliphatic sulfon 99.9 2.1E-22 4.6E-27 179.3 6.3 141 55-209 16-168 (257)
146 PRK13657 cyclic beta-1,2-gluca 99.9 1.5E-21 3.3E-26 192.3 12.9 151 55-209 338-506 (588)
147 PRK10790 putative multidrug tr 99.9 1.3E-21 2.7E-26 193.1 12.3 149 55-209 344-511 (592)
148 PRK15079 oligopeptide ABC tran 99.9 9.3E-22 2E-26 181.1 10.4 141 69-209 35-196 (331)
149 PRK13642 cbiO cobalt transport 99.9 1.4E-21 3.1E-26 175.7 11.3 153 56-209 9-175 (277)
150 TIGR00958 3a01208 Conjugate Tr 99.9 1.4E-21 3.1E-26 196.5 12.6 152 55-208 482-651 (711)
151 TIGR03258 PhnT 2-aminoethylpho 99.9 6.5E-22 1.4E-26 184.0 9.4 141 67-209 17-172 (362)
152 COG4604 CeuD ABC-type enteroch 99.9 9E-22 1.9E-26 165.1 9.2 145 64-208 10-169 (252)
153 PRK11701 phnK phosphonate C-P 99.9 1.5E-21 3.3E-26 173.5 11.3 143 67-209 18-186 (258)
154 TIGR03415 ABC_choXWV_ATP choli 99.9 9E-22 2E-26 183.9 10.2 146 64-209 33-199 (382)
155 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-21 2.5E-26 173.1 10.4 142 68-209 14-179 (247)
156 COG1119 ModF ABC-type molybden 99.9 1.6E-21 3.5E-26 168.7 10.7 147 64-210 40-207 (257)
157 cd03254 ABCC_Glucan_exporter_l 99.9 2.5E-21 5.3E-26 169.0 11.9 139 69-209 17-174 (229)
158 COG4987 CydC ABC-type transpor 99.9 2.7E-21 6E-26 182.4 12.9 152 55-209 340-509 (573)
159 PRK11308 dppF dipeptide transp 99.9 2E-21 4.4E-26 178.6 11.9 141 69-209 29-189 (327)
160 PRK11022 dppD dipeptide transp 99.9 1.4E-21 2.9E-26 179.7 10.5 140 69-208 21-187 (326)
161 PRK11248 tauB taurine transpor 99.9 4.1E-22 8.9E-27 177.2 6.8 137 68-209 14-163 (255)
162 COG4618 ArpD ABC-type protease 99.9 4.9E-21 1.1E-25 179.5 14.3 157 46-207 326-505 (580)
163 cd03252 ABCC_Hemolysin The ABC 99.9 2.4E-21 5.2E-26 170.0 11.4 139 69-209 16-173 (237)
164 PRK13645 cbiO cobalt transport 99.9 2E-21 4.3E-26 175.7 11.1 140 70-209 26-185 (289)
165 TIGR02203 MsbA_lipidA lipid A 99.9 3E-21 6.5E-26 189.4 12.9 151 55-209 334-504 (571)
166 cd03234 ABCG_White The White s 99.9 7.8E-22 1.7E-26 172.1 7.9 149 55-209 7-178 (226)
167 COG4175 ProV ABC-type proline/ 99.9 2.2E-21 4.8E-26 172.9 10.7 138 71-208 44-198 (386)
168 TIGR03005 ectoine_ehuA ectoine 99.9 6E-22 1.3E-26 175.5 7.1 142 68-209 13-181 (252)
169 PRK10762 D-ribose transporter 99.9 2.1E-21 4.6E-26 188.0 11.5 143 67-209 16-176 (501)
170 cd03251 ABCC_MsbA MsbA is an e 99.9 3.7E-21 8.1E-26 168.4 12.0 139 69-209 16-173 (234)
171 cd03253 ABCC_ATM1_transporter 99.9 3.6E-21 7.7E-26 168.7 11.8 148 57-209 6-172 (236)
172 TIGR02769 nickel_nikE nickel i 99.9 2E-21 4.4E-26 173.5 10.4 142 68-209 24-185 (265)
173 TIGR02142 modC_ABC molybdenum 99.9 1.1E-21 2.3E-26 182.3 8.8 136 73-209 15-166 (354)
174 cd03248 ABCC_TAP TAP, the Tran 99.9 4.7E-21 1E-25 167.0 12.4 154 55-209 15-185 (226)
175 PRK09700 D-allose transporter 99.9 8.8E-22 1.9E-26 191.0 8.5 145 65-209 15-180 (510)
176 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.5E-21 9.7E-26 168.4 12.1 138 70-209 18-174 (238)
177 cd03267 ABC_NatA_like Similar 99.9 6.9E-22 1.5E-26 173.7 6.9 145 64-209 30-188 (236)
178 PRK15439 autoinducer 2 ABC tra 99.9 8.4E-22 1.8E-26 191.2 8.0 142 65-209 21-175 (510)
179 PRK14267 phosphate ABC transpo 99.9 9.3E-22 2E-26 174.3 7.5 143 67-209 16-184 (253)
180 PRK14269 phosphate ABC transpo 99.9 2.9E-21 6.3E-26 170.6 10.7 142 68-209 15-177 (246)
181 PRK10938 putative molybdenum t 99.9 2.2E-21 4.7E-26 187.4 10.6 143 67-209 15-170 (490)
182 PRK13539 cytochrome c biogenes 99.9 7.2E-22 1.6E-26 170.2 6.5 136 68-209 15-162 (207)
183 COG4619 ABC-type uncharacteriz 99.9 1.7E-21 3.6E-26 159.8 8.2 144 67-210 15-169 (223)
184 PRK10771 thiQ thiamine transpo 99.9 3.2E-21 6.9E-26 168.8 10.6 136 73-210 17-165 (232)
185 PRK10619 histidine/lysine/argi 99.9 8.9E-22 1.9E-26 175.0 7.1 142 68-209 18-187 (257)
186 TIGR01978 sufC FeS assembly AT 99.9 2.8E-21 6.1E-26 170.0 10.2 142 68-209 13-179 (243)
187 cd03245 ABCC_bacteriocin_expor 99.9 8.8E-22 1.9E-26 170.8 6.9 136 69-209 18-175 (220)
188 PRK13549 xylose transporter AT 99.9 3.6E-21 7.7E-26 186.6 11.9 144 66-209 16-178 (506)
189 PRK14259 phosphate ABC transpo 99.9 3.5E-21 7.6E-26 172.4 10.9 143 67-209 25-189 (269)
190 PRK15056 manganese/iron transp 99.8 1.4E-21 3E-26 175.3 8.3 149 55-209 10-177 (272)
191 PRK14273 phosphate ABC transpo 99.8 3.4E-21 7.3E-26 170.9 10.6 142 68-209 20-185 (254)
192 PRK09984 phosphonate/organopho 99.8 1.1E-21 2.3E-26 174.9 7.4 143 67-209 16-187 (262)
193 PRK14268 phosphate ABC transpo 99.8 3.5E-21 7.5E-26 171.3 10.6 143 67-209 24-189 (258)
194 PRK11144 modC molybdate transp 99.8 6.9E-22 1.5E-26 183.5 6.3 137 73-209 16-163 (352)
195 PRK03695 vitamin B12-transport 99.8 6.4E-21 1.4E-25 168.8 12.2 140 70-209 11-168 (248)
196 cd03229 ABC_Class3 This class 99.8 6.9E-22 1.5E-26 166.4 5.6 118 68-209 13-135 (178)
197 TIGR02323 CP_lyasePhnK phospho 99.8 3.4E-21 7.3E-26 170.7 10.1 142 68-209 16-183 (253)
198 PF00005 ABC_tran: ABC transpo 99.8 1E-21 2.3E-26 157.7 6.2 124 73-202 3-135 (137)
199 PRK14242 phosphate transporter 99.8 3.5E-21 7.7E-26 170.6 10.1 142 68-209 19-184 (253)
200 PRK10522 multidrug transporter 99.8 5E-21 1.1E-25 187.3 12.2 150 55-209 326-484 (547)
201 cd03233 ABC_PDR_domain1 The pl 99.8 3.9E-21 8.5E-26 165.1 10.1 140 55-209 7-153 (202)
202 cd03244 ABCC_MRP_domain2 Domai 99.8 2E-21 4.4E-26 168.6 8.1 147 56-209 7-174 (221)
203 TIGR01277 thiQ thiamine ABC tr 99.8 4.9E-21 1.1E-25 165.6 10.4 136 72-209 15-163 (213)
204 PRK13547 hmuV hemin importer A 99.8 6.2E-21 1.3E-25 171.2 11.4 143 67-209 13-189 (272)
205 PRK10744 pstB phosphate transp 99.8 4.6E-21 1E-25 170.7 10.4 151 55-209 17-191 (260)
206 PRK13543 cytochrome c biogenes 99.8 1.9E-21 4.2E-26 168.3 7.8 138 67-209 23-172 (214)
207 PTZ00265 multidrug resistance 99.8 5.9E-21 1.3E-25 203.6 12.7 152 55-209 1169-1393(1466)
208 cd03300 ABC_PotA_N PotA is an 99.8 1.8E-21 4E-26 170.4 7.3 141 68-210 13-166 (232)
209 PRK14235 phosphate transporter 99.8 5.2E-21 1.1E-25 171.1 10.2 143 67-209 31-198 (267)
210 PRK15093 antimicrobial peptide 99.8 2.4E-21 5.1E-26 178.4 8.2 142 68-209 20-193 (330)
211 COG4181 Predicted ABC-type tra 99.8 4.1E-21 8.8E-26 158.0 8.6 139 70-208 25-180 (228)
212 PRK14241 phosphate transporter 99.8 5.5E-21 1.2E-25 170.0 9.9 142 68-209 17-183 (258)
213 TIGR01184 ntrCD nitrate transp 99.8 9.3E-21 2E-25 165.9 11.2 133 73-210 3-150 (230)
214 TIGR01846 type_I_sec_HlyB type 99.8 1.1E-20 2.4E-25 189.5 13.2 151 55-209 459-628 (694)
215 PRK10982 galactose/methyl gala 99.8 7.8E-21 1.7E-25 183.6 11.7 143 67-209 10-169 (491)
216 TIGR03740 galliderm_ABC gallid 99.8 1.6E-21 3.5E-26 169.6 6.1 138 68-209 13-159 (223)
217 TIGR02324 CP_lyasePhnL phospho 99.8 1.1E-20 2.3E-25 164.5 11.1 139 70-208 23-183 (224)
218 TIGR01842 type_I_sec_PrtD type 99.8 1.3E-20 2.8E-25 184.3 12.8 150 55-209 320-489 (544)
219 cd03230 ABC_DR_subfamily_A Thi 99.8 6.4E-21 1.4E-25 159.8 9.2 115 68-209 13-130 (173)
220 TIGR00968 3a0106s01 sulfate AB 99.8 3E-21 6.5E-26 169.7 7.5 140 68-209 13-165 (237)
221 cd03246 ABCC_Protease_Secretio 99.8 3.8E-21 8.2E-26 161.2 7.7 113 69-209 16-131 (173)
222 PRK09473 oppD oligopeptide tra 99.8 1E-20 2.3E-25 174.1 11.2 141 69-209 30-196 (330)
223 TIGR01192 chvA glucan exporter 99.8 1.6E-20 3.5E-25 185.0 13.2 150 55-209 338-506 (585)
224 PRK11288 araG L-arabinose tran 99.8 1E-20 2.2E-25 183.2 11.6 143 67-209 16-175 (501)
225 PRK11537 putative GTP-binding 99.8 1.6E-20 3.5E-25 171.7 12.3 179 80-269 3-198 (318)
226 cd03290 ABCC_SUR1_N The SUR do 99.8 1.6E-20 3.4E-25 162.9 11.4 147 56-208 5-174 (218)
227 TIGR02204 MsbA_rel ABC transpo 99.8 1.4E-20 3E-25 184.9 12.4 150 55-209 341-511 (576)
228 cd03247 ABCC_cytochrome_bd The 99.8 4.5E-21 9.7E-26 161.4 7.5 123 57-209 6-133 (178)
229 cd03299 ABC_ModC_like Archeal 99.8 8E-21 1.7E-25 166.8 9.3 139 70-210 14-165 (235)
230 cd03228 ABCC_MRP_Like The MRP 99.8 1.1E-20 2.4E-25 158.1 9.7 113 69-209 16-131 (171)
231 PRK14244 phosphate ABC transpo 99.8 7.5E-21 1.6E-25 168.4 9.1 152 55-210 9-185 (251)
232 PLN03130 ABC transporter C fam 99.8 3.2E-20 7E-25 199.5 15.5 149 55-209 1241-1409(1622)
233 TIGR02475 CobW cobalamin biosy 99.8 2.9E-20 6.4E-25 171.6 13.2 183 80-270 3-225 (341)
234 PRK14274 phosphate ABC transpo 99.8 1.5E-20 3.2E-25 167.3 10.7 143 67-209 24-190 (259)
235 PRK10789 putative multidrug tr 99.8 1.6E-20 3.5E-25 184.5 12.0 150 55-209 317-486 (569)
236 PRK14263 phosphate ABC transpo 99.8 1.4E-20 2.9E-25 168.0 10.4 146 64-209 17-184 (261)
237 TIGR02770 nickel_nikD nickel i 99.8 1.2E-20 2.7E-25 165.0 10.0 136 72-209 3-160 (230)
238 PRK14248 phosphate ABC transpo 99.8 1.3E-20 2.9E-25 168.4 10.3 152 55-210 25-200 (268)
239 KOG0056 Heavy metal exporter H 99.8 1.6E-20 3.4E-25 175.4 10.9 151 55-210 541-710 (790)
240 cd03216 ABC_Carb_Monos_I This 99.8 8.1E-21 1.8E-25 157.9 8.2 108 57-209 6-117 (163)
241 TIGR02633 xylG D-xylose ABC tr 99.8 2E-20 4.2E-25 181.2 12.1 143 67-209 13-176 (500)
242 COG4525 TauB ABC-type taurine 99.8 7.3E-21 1.6E-25 159.5 7.8 146 55-207 7-165 (259)
243 PRK09700 D-allose transporter 99.8 2.7E-20 6E-25 180.6 13.1 142 69-210 277-445 (510)
244 COG3845 ABC-type uncharacteriz 99.8 4.8E-20 1E-24 172.6 14.0 143 64-206 13-172 (501)
245 cd03289 ABCC_CFTR2 The CFTR su 99.8 5.9E-21 1.3E-25 171.5 7.6 150 55-209 6-173 (275)
246 KOG2743 Cobalamin synthesis pr 99.8 1.8E-20 3.9E-25 165.5 10.4 193 70-272 46-264 (391)
247 PRK14243 phosphate transporter 99.8 2.1E-20 4.4E-25 167.0 11.0 143 67-209 22-186 (264)
248 PRK14254 phosphate ABC transpo 99.8 1.1E-20 2.4E-25 170.6 9.3 151 55-209 43-215 (285)
249 PRK10419 nikE nickel transport 99.8 3.2E-20 6.9E-25 166.1 12.1 140 69-208 26-185 (268)
250 cd03369 ABCC_NFT1 Domain 2 of 99.8 9.4E-21 2E-25 163.0 8.2 130 69-209 22-160 (207)
251 TIGR01194 cyc_pep_trnsptr cycl 99.8 2.9E-20 6.4E-25 182.2 12.7 154 55-209 341-505 (555)
252 PRK13541 cytochrome c biogenes 99.8 5.6E-21 1.2E-25 163.1 6.7 133 69-209 14-158 (195)
253 PRK14270 phosphate ABC transpo 99.8 2.4E-20 5.1E-25 165.2 10.7 142 68-209 17-182 (251)
254 PRK14237 phosphate transporter 99.8 3.3E-20 7.1E-25 166.0 11.5 163 43-209 9-198 (267)
255 PRK14246 phosphate ABC transpo 99.8 3.4E-20 7.5E-25 165.0 11.6 145 65-209 20-188 (257)
256 PLN03232 ABC transporter C fam 99.8 4E-20 8.6E-25 198.2 14.1 149 55-209 1238-1406(1495)
257 PRK14256 phosphate ABC transpo 99.8 2.3E-20 5.1E-25 165.3 10.4 142 68-209 17-183 (252)
258 PRK14265 phosphate ABC transpo 99.8 3.1E-20 6.7E-25 166.8 10.9 143 67-209 32-196 (274)
259 PRK14238 phosphate transporter 99.8 2.7E-20 5.9E-25 166.8 10.4 143 68-210 37-203 (271)
260 PRK14240 phosphate transporter 99.8 3.1E-20 6.8E-25 164.2 10.7 150 56-209 8-181 (250)
261 PRK13549 xylose transporter AT 99.8 3.9E-20 8.6E-25 179.4 12.2 143 68-210 275-441 (506)
262 PRK14271 phosphate ABC transpo 99.8 3.6E-20 7.8E-25 166.6 11.0 151 55-209 25-198 (276)
263 PRK09580 sufC cysteine desulfu 99.8 4.2E-20 9.2E-25 163.0 11.2 142 68-209 14-180 (248)
264 cd03215 ABC_Carb_Monos_II This 99.8 3E-20 6.4E-25 157.0 9.7 121 70-209 15-139 (182)
265 PRK14253 phosphate ABC transpo 99.8 3.8E-20 8.2E-25 163.6 10.8 143 67-209 15-180 (249)
266 PRK14260 phosphate ABC transpo 99.8 1.2E-20 2.7E-25 167.8 7.5 142 68-209 20-185 (259)
267 PRK14251 phosphate ABC transpo 99.8 4E-20 8.7E-25 163.6 10.7 142 68-209 17-182 (251)
268 cd03237 ABC_RNaseL_inhibitor_d 99.8 7.8E-21 1.7E-25 168.2 6.1 116 79-209 23-150 (246)
269 TIGR03771 anch_rpt_ABC anchore 99.8 6.4E-20 1.4E-24 159.8 11.7 127 78-209 3-148 (223)
270 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.8E-20 6.1E-25 159.5 9.2 120 68-209 13-139 (200)
271 PRK14262 phosphate ABC transpo 99.8 3.6E-20 7.8E-25 163.9 10.1 143 67-209 15-181 (250)
272 PRK09544 znuC high-affinity zi 99.8 7.5E-21 1.6E-25 168.8 5.7 131 68-209 17-155 (251)
273 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 2.9E-20 6.3E-25 162.2 9.3 141 64-209 31-177 (224)
274 PRK14245 phosphate ABC transpo 99.8 3.6E-20 7.9E-25 163.9 10.0 143 67-209 15-181 (250)
275 PRK14272 phosphate ABC transpo 99.8 3.9E-20 8.4E-25 163.8 10.1 142 68-209 17-183 (252)
276 COG4598 HisP ABC-type histidin 99.8 2.6E-20 5.6E-25 154.4 8.2 144 64-207 15-185 (256)
277 PRK14261 phosphate ABC transpo 99.8 3.4E-20 7.3E-25 164.4 9.6 144 67-210 18-185 (253)
278 PRK14275 phosphate ABC transpo 99.8 3.1E-20 6.8E-25 167.7 9.4 142 68-209 52-217 (286)
279 TIGR02633 xylG D-xylose ABC tr 99.8 6.5E-20 1.4E-24 177.6 12.3 143 68-210 273-439 (500)
280 cd03223 ABCD_peroxisomal_ALDP 99.8 3.7E-20 7.9E-25 154.4 9.0 117 57-209 6-126 (166)
281 PRK10418 nikD nickel transport 99.8 3E-20 6.4E-25 165.0 9.0 139 68-209 16-175 (254)
282 PRK10261 glutathione transport 99.8 5.2E-20 1.1E-24 182.6 11.7 141 69-209 30-203 (623)
283 cd03213 ABCG_EPDR ABCG transpo 99.8 5.4E-20 1.2E-24 157.1 10.1 119 69-209 23-146 (194)
284 CHL00131 ycf16 sulfate ABC tra 99.8 7.2E-20 1.6E-24 162.0 11.3 142 68-209 20-186 (252)
285 PRK10261 glutathione transport 99.8 3.2E-20 7E-25 184.1 10.0 141 69-209 338-498 (623)
286 PRK14249 phosphate ABC transpo 99.8 5.4E-20 1.2E-24 162.9 10.4 142 68-209 17-182 (251)
287 cd03250 ABCC_MRP_domain1 Domai 99.8 6.3E-20 1.4E-24 157.5 10.5 125 69-209 19-162 (204)
288 cd03288 ABCC_SUR2 The SUR doma 99.8 9.7E-20 2.1E-24 162.0 12.0 151 55-209 23-191 (257)
289 TIGR03269 met_CoM_red_A2 methy 99.8 6E-20 1.3E-24 178.6 11.3 142 69-210 298-463 (520)
290 PRK15134 microcin C ABC transp 99.8 4.6E-20 9.9E-25 179.8 10.5 142 69-210 300-461 (529)
291 TIGR00957 MRP_assoc_pro multi 99.8 1.4E-19 3.1E-24 194.2 15.0 151 55-209 1288-1456(1522)
292 cd03236 ABC_RNaseL_inhibitor_d 99.8 5.7E-20 1.2E-24 163.5 9.9 139 69-209 15-174 (255)
293 PRK11288 araG L-arabinose tran 99.8 8.6E-20 1.9E-24 176.8 11.8 142 69-210 267-432 (501)
294 PRK14239 phosphate transporter 99.8 9E-20 2E-24 161.4 10.7 142 68-209 18-183 (252)
295 PRK10762 D-ribose transporter 99.8 1E-19 2.2E-24 176.3 11.9 141 70-210 267-431 (501)
296 TIGR00073 hypB hydrogenase acc 99.8 1.8E-19 3.9E-24 155.3 12.2 189 72-271 12-203 (207)
297 PRK15134 microcin C ABC transp 99.8 8.4E-20 1.8E-24 177.9 11.3 141 69-209 23-191 (529)
298 COG1129 MglA ABC-type sugar tr 99.8 1.3E-19 2.9E-24 172.1 12.2 144 64-207 17-178 (500)
299 TIGR01257 rim_protein retinal- 99.8 4.8E-20 1E-24 198.8 10.3 141 69-210 1953-2106(2272)
300 PRK14236 phosphate transporter 99.8 9.2E-20 2E-24 163.5 10.3 151 55-209 29-203 (272)
301 PRK14266 phosphate ABC transpo 99.8 1E-19 2.3E-24 160.9 10.5 143 67-209 15-181 (250)
302 COG4161 ArtP ABC-type arginine 99.8 2.3E-19 5.1E-24 146.5 11.4 144 64-207 11-174 (242)
303 COG4148 ModC ABC-type molybdat 99.8 3.3E-20 7.2E-25 163.0 6.9 156 76-231 18-209 (352)
304 PRK14257 phosphate ABC transpo 99.8 9.9E-20 2.1E-24 167.5 10.5 153 55-209 84-260 (329)
305 PRK10938 putative molybdenum t 99.8 1.7E-19 3.8E-24 174.2 12.4 147 64-210 269-437 (490)
306 TIGR03269 met_CoM_red_A2 methy 99.8 7.8E-20 1.7E-24 177.8 9.9 143 67-209 12-203 (520)
307 COG0444 DppD ABC-type dipeptid 99.8 7.8E-20 1.7E-24 164.1 9.0 142 67-208 17-187 (316)
308 cd03232 ABC_PDR_domain2 The pl 99.8 3.2E-20 6.9E-25 158.2 6.2 131 56-209 8-143 (192)
309 PRK14264 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 164.8 10.9 143 67-209 57-235 (305)
310 PRK14255 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 161.0 9.4 143 67-209 17-183 (252)
311 PRK10982 galactose/methyl gala 99.8 2.2E-19 4.8E-24 173.5 12.4 143 68-210 261-427 (491)
312 PRK14258 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 161.1 10.3 142 68-209 20-185 (261)
313 PRK15439 autoinducer 2 ABC tra 99.8 2.2E-19 4.8E-24 174.3 12.2 140 71-210 279-439 (510)
314 cd03222 ABC_RNaseL_inhibitor T 99.8 7.2E-20 1.6E-24 154.2 7.6 95 64-209 9-106 (177)
315 PTZ00243 ABC transporter; Prov 99.8 1.8E-19 3.8E-24 193.5 12.1 148 55-208 1312-1480(1560)
316 PRK14252 phosphate ABC transpo 99.8 8.4E-20 1.8E-24 163.0 7.6 151 55-209 20-196 (265)
317 PRK09435 membrane ATPase/prote 99.8 3.6E-19 7.8E-24 163.2 11.3 187 79-271 54-256 (332)
318 PTZ00265 multidrug resistance 99.8 4.4E-19 9.6E-24 189.3 12.7 153 55-208 386-613 (1466)
319 TIGR01257 rim_protein retinal- 99.8 8.4E-20 1.8E-24 196.9 6.9 141 68-209 943-1096(2272)
320 COG1123 ATPase components of v 99.8 4E-19 8.6E-24 170.0 10.8 139 69-208 305-463 (539)
321 COG1123 ATPase components of v 99.8 6.6E-19 1.4E-23 168.5 11.6 140 69-208 23-188 (539)
322 PLN03211 ABC transporter G-25; 99.8 4.2E-19 9.2E-24 176.7 10.4 142 64-209 77-241 (659)
323 COG4586 ABC-type uncharacteriz 99.8 4.7E-19 1E-23 155.3 9.3 142 68-210 37-192 (325)
324 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 3E-19 6.6E-24 145.5 7.0 90 68-209 13-105 (144)
325 PRK11819 putative ABC transpor 99.8 1.9E-19 4.2E-24 176.4 6.9 131 67-209 19-198 (556)
326 PRK15064 ABC transporter ATP-b 99.8 1.6E-19 3.6E-24 176.0 6.2 132 67-209 13-190 (530)
327 TIGR01187 potA spermidine/putr 99.8 1.8E-19 4E-24 165.5 6.1 122 86-209 1-135 (325)
328 COG5265 ATM1 ABC-type transpor 99.8 1.1E-18 2.4E-23 160.6 10.9 151 55-208 266-433 (497)
329 cd00267 ABC_ATPase ABC (ATP-bi 99.8 8E-19 1.7E-23 144.6 8.6 99 69-208 13-114 (157)
330 TIGR01271 CFTR_protein cystic 99.8 1E-18 2.2E-23 187.3 11.7 151 55-208 1221-1387(1490)
331 PRK13409 putative ATPase RIL; 99.8 3.1E-19 6.7E-24 175.7 7.0 144 64-209 82-247 (590)
332 PRK15064 ABC transporter ATP-b 99.8 2.1E-19 4.6E-24 175.2 5.5 136 64-210 328-474 (530)
333 COG4167 SapF ABC-type antimicr 99.8 1.8E-18 4E-23 143.9 10.2 139 69-207 27-182 (267)
334 COG4107 PhnK ABC-type phosphon 99.8 2.7E-18 5.9E-23 141.9 11.1 142 64-208 15-185 (258)
335 PRK10636 putative ABC transpor 99.8 3.7E-19 8E-24 176.9 7.1 145 65-209 11-184 (638)
336 PRK10535 macrolide transporter 99.8 1.5E-18 3.3E-23 172.8 11.4 140 70-209 23-179 (648)
337 PRK11819 putative ABC transpor 99.8 1.2E-18 2.5E-23 170.9 9.9 133 65-209 334-480 (556)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.2E-18 2.6E-23 170.7 9.7 133 65-209 332-478 (552)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 5.1E-19 1.1E-23 173.3 6.8 139 56-209 9-196 (552)
340 COG4133 CcmA ABC-type transpor 99.8 1.8E-18 4E-23 144.2 8.7 136 67-209 14-165 (209)
341 COG4172 ABC-type uncharacteriz 99.8 3.4E-18 7.5E-23 156.8 11.3 139 69-207 301-459 (534)
342 PRK11147 ABC transporter ATPas 99.8 1.5E-18 3.3E-23 172.6 9.5 133 65-209 329-475 (635)
343 COG1101 PhnK ABC-type uncharac 99.8 2.7E-18 5.8E-23 146.1 9.5 137 68-208 19-182 (263)
344 COG4608 AppF ABC-type oligopep 99.8 1.7E-18 3.7E-23 152.4 8.7 112 69-208 27-143 (268)
345 PRK13546 teichoic acids export 99.8 1.6E-18 3.6E-23 154.9 8.5 135 69-209 38-178 (264)
346 COG4674 Uncharacterized ABC-ty 99.8 8.2E-19 1.8E-23 147.2 6.0 145 64-208 14-181 (249)
347 PRK10636 putative ABC transpor 99.8 1.2E-18 2.5E-23 173.4 7.7 135 64-209 321-465 (638)
348 cd03291 ABCC_CFTR1 The CFTR su 99.8 4.2E-18 9.2E-23 153.6 10.4 128 68-209 50-194 (282)
349 PF03308 ArgK: ArgK protein; 99.7 3.4E-18 7.4E-23 149.8 9.1 184 79-270 27-225 (266)
350 PLN03073 ABC transporter F fam 99.7 1.3E-18 2.9E-23 174.4 7.5 137 55-209 512-662 (718)
351 TIGR00955 3a01204 The Eye Pigm 99.7 4.4E-18 9.6E-23 168.7 11.1 139 67-208 37-200 (617)
352 PRK13545 tagH teichoic acids e 99.7 3.1E-18 6.8E-23 164.4 9.2 134 70-209 39-178 (549)
353 TIGR00954 3a01203 Peroxysomal 99.7 3.5E-18 7.6E-23 170.5 9.9 137 55-208 455-616 (659)
354 PRK13409 putative ATPase RIL; 99.7 1.2E-18 2.6E-23 171.6 6.0 122 71-209 355-488 (590)
355 PRK15177 Vi polysaccharide exp 99.7 9.2E-18 2E-22 145.4 9.3 130 71-209 3-139 (213)
356 COG0488 Uup ATPase components 99.7 9.8E-18 2.1E-22 162.2 9.8 134 64-209 12-188 (530)
357 TIGR00956 3a01205 Pleiotropic 99.7 9.8E-18 2.1E-22 178.6 10.7 138 68-209 776-937 (1394)
358 COG0396 sufC Cysteine desulfur 99.7 3.1E-17 6.7E-22 140.8 11.3 140 69-209 18-179 (251)
359 KOG0059 Lipid exporter ABCA1 a 99.7 1.4E-17 3E-22 170.8 10.6 179 64-247 573-772 (885)
360 cd03238 ABC_UvrA The excision 99.7 1.8E-17 3.9E-22 139.5 9.0 109 70-209 10-124 (176)
361 KOG0054 Multidrug resistance-a 99.7 2E-17 4.4E-22 172.2 11.2 151 55-208 1142-1309(1381)
362 COG1703 ArgK Putative periplas 99.7 9.4E-17 2E-21 142.6 12.2 185 77-269 47-248 (323)
363 PRK11147 ABC transporter ATPas 99.7 8.6E-18 1.9E-22 167.2 6.2 143 65-209 13-191 (635)
364 COG4136 ABC-type uncharacteriz 99.7 5.1E-17 1.1E-21 131.3 7.5 147 55-207 6-167 (213)
365 PLN03232 ABC transporter C fam 99.7 5.3E-17 1.1E-21 174.3 9.9 138 55-208 618-774 (1495)
366 PLN03140 ABC transporter G fam 99.7 9.9E-17 2.1E-21 171.1 10.8 138 69-209 894-1054(1470)
367 COG1134 TagH ABC-type polysacc 99.7 1.1E-16 2.4E-21 138.7 8.7 129 67-201 39-173 (249)
368 TIGR00957 MRP_assoc_pro multi 99.7 1.2E-16 2.5E-21 172.0 10.8 135 55-208 640-794 (1522)
369 TIGR00956 3a01205 Pleiotropic 99.7 6.3E-17 1.4E-21 172.5 8.2 141 68-209 74-244 (1394)
370 COG4778 PhnL ABC-type phosphon 99.7 1.6E-16 3.4E-21 130.9 8.5 139 68-209 23-187 (235)
371 COG4172 ABC-type uncharacteriz 99.7 2.3E-16 5E-21 144.9 9.2 151 56-208 13-191 (534)
372 PLN03130 ABC transporter C fam 99.7 2.1E-16 4.5E-21 170.4 10.0 136 55-207 618-773 (1622)
373 PLN03073 ABC transporter F fam 99.7 3.4E-16 7.4E-21 157.1 10.9 145 65-209 187-379 (718)
374 KOG0061 Transporter, ABC super 99.6 4.1E-16 8.8E-21 154.2 9.6 139 68-209 43-205 (613)
375 TIGR01271 CFTR_protein cystic 99.6 6.5E-16 1.4E-20 165.9 11.8 124 69-208 440-582 (1490)
376 COG4615 PvdE ABC-type sideroph 99.6 2E-15 4.3E-20 138.4 13.2 148 55-209 326-482 (546)
377 cd03112 CobW_like The function 99.6 5E-16 1.1E-20 128.5 8.3 141 82-228 1-158 (158)
378 PLN03140 ABC transporter G fam 99.6 8E-17 1.7E-21 171.7 4.0 139 68-209 178-371 (1470)
379 PTZ00243 ABC transporter; Prov 99.6 7E-16 1.5E-20 166.0 10.4 125 68-208 673-816 (1560)
380 TIGR00750 lao LAO/AO transport 99.6 3E-15 6.6E-20 136.2 11.2 191 77-270 30-233 (300)
381 COG0488 Uup ATPase components 99.6 8.3E-16 1.8E-20 148.9 7.9 136 55-209 325-474 (530)
382 cd03278 ABC_SMC_barmotin Barmo 99.6 1.6E-15 3.4E-20 130.0 6.8 116 78-209 20-152 (197)
383 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2.1E-14 4.6E-19 126.3 10.7 37 173-209 154-197 (243)
384 cd03270 ABC_UvrA_I The excisio 99.5 3.5E-14 7.7E-19 124.1 10.3 51 159-209 118-174 (226)
385 COG4138 BtuD ABC-type cobalami 99.5 5.5E-15 1.2E-19 122.4 2.3 153 78-230 22-194 (248)
386 PRK15494 era GTPase Era; Provi 99.5 2.2E-13 4.8E-18 126.0 11.8 179 45-271 9-212 (339)
387 KOG0054 Multidrug resistance-a 99.5 1.1E-13 2.3E-18 144.7 10.2 122 70-207 536-676 (1381)
388 KOG0927 Predicted transporter 99.5 1.2E-13 2.6E-18 130.9 8.1 146 55-210 393-545 (614)
389 COG1159 Era GTPase [General fu 99.5 3.4E-13 7.5E-18 120.1 10.6 147 81-271 6-168 (298)
390 cd03273 ABC_SMC2_euk Eukaryoti 99.5 8.6E-14 1.9E-18 123.4 6.5 129 81-209 25-205 (251)
391 COG1160 Predicted GTPases [Gen 99.5 2.5E-13 5.4E-18 127.0 9.3 149 80-270 177-346 (444)
392 KOG0065 Pleiotropic drug resis 99.4 1.3E-13 2.8E-18 141.9 7.3 141 66-209 802-965 (1391)
393 COG4178 ABC-type uncharacteriz 99.4 5.3E-13 1.2E-17 129.7 10.6 153 55-224 396-569 (604)
394 KOG0062 ATPase component of AB 99.4 1.4E-13 2.9E-18 129.9 6.1 138 64-209 89-233 (582)
395 cd03279 ABC_sbcCD SbcCD and ot 99.4 4.2E-14 9.2E-19 122.4 2.5 127 80-209 27-168 (213)
396 COG1129 MglA ABC-type sugar tr 99.4 2E-12 4.4E-17 123.3 12.7 142 70-211 274-438 (500)
397 PRK00089 era GTPase Era; Revie 99.4 1.2E-12 2.6E-17 118.3 10.0 148 81-271 5-167 (292)
398 TIGR00436 era GTP-binding prot 99.4 1.5E-12 3.2E-17 116.8 10.0 77 193-271 81-160 (270)
399 cd04163 Era Era subfamily. Er 99.4 1.8E-12 3.9E-17 105.1 9.6 78 193-271 84-165 (168)
400 PF10662 PduV-EutP: Ethanolami 99.4 8E-12 1.7E-16 101.2 12.9 77 193-271 65-142 (143)
401 KOG0066 eIF2-interacting prote 99.4 1.3E-12 2.9E-17 121.4 9.1 137 55-208 590-738 (807)
402 cd03274 ABC_SMC4_euk Eukaryoti 99.4 5.8E-14 1.3E-18 121.6 0.1 39 171-209 121-166 (212)
403 COG1245 Predicted ATPase, RNas 99.4 8.3E-13 1.8E-17 123.2 7.3 130 57-208 341-489 (591)
404 cd03271 ABC_UvrA_II The excisi 99.3 4.1E-12 8.9E-17 113.3 9.6 51 159-209 150-207 (261)
405 KOG0927 Predicted transporter 99.3 4.5E-12 9.7E-17 120.3 8.4 142 67-209 87-256 (614)
406 cd00881 GTP_translation_factor 99.3 1.6E-11 3.5E-16 102.5 10.7 161 84-271 2-183 (189)
407 PRK10416 signal recognition pa 99.3 1.5E-11 3.3E-16 112.7 11.2 170 79-270 112-305 (318)
408 PRK15467 ethanolamine utilizat 99.3 4.4E-11 9.6E-16 98.7 12.7 76 193-271 66-143 (158)
409 cd03240 ABC_Rad50 The catalyti 99.3 7.3E-13 1.6E-17 114.1 1.1 116 83-208 24-155 (204)
410 cd03114 ArgK-like The function 99.3 5.3E-12 1.2E-16 103.4 5.6 141 83-227 1-148 (148)
411 cd01895 EngA2 EngA2 subfamily. 99.3 4.4E-11 9.5E-16 97.9 10.3 81 193-273 86-173 (174)
412 cd01898 Obg Obg subfamily. Th 99.3 3.1E-11 6.8E-16 99.4 9.4 78 193-272 80-168 (170)
413 cd04160 Arfrp1 Arfrp1 subfamil 99.2 2.3E-11 5.1E-16 99.9 7.5 98 171-270 50-164 (167)
414 COG0486 ThdF Predicted GTPase 99.2 3.1E-11 6.7E-16 113.4 8.8 144 78-270 214-371 (454)
415 cd04155 Arl3 Arl3 subfamily. 99.2 5.3E-11 1.1E-15 98.5 9.3 143 81-271 14-171 (173)
416 PRK13768 GTPase; Provisional 99.2 9.9E-11 2.1E-15 104.1 11.6 181 82-272 3-244 (253)
417 cd04164 trmE TrmE (MnmE, ThdF, 99.2 3E-11 6.4E-16 97.6 7.4 71 193-272 82-154 (157)
418 cd01888 eIF2_gamma eIF2-gamma 99.2 1.2E-10 2.6E-15 100.0 10.7 98 172-271 84-195 (203)
419 cd00879 Sar1 Sar1 subfamily. 99.2 4.3E-11 9.3E-16 100.9 7.7 96 175-272 67-188 (190)
420 TIGR02528 EutP ethanolamine ut 99.2 3.1E-10 6.7E-15 91.0 12.1 76 193-270 64-140 (142)
421 COG1245 Predicted ATPase, RNas 99.2 8.6E-11 1.9E-15 109.9 9.6 141 64-210 83-249 (591)
422 PRK12298 obgE GTPase CgtA; Rev 99.2 5.3E-11 1.1E-15 112.0 8.3 197 31-271 102-329 (390)
423 cd03276 ABC_SMC6_euk Eukaryoti 99.2 2.5E-11 5.3E-16 104.1 5.5 114 82-209 22-148 (198)
424 cd01878 HflX HflX subfamily. 99.2 9.9E-11 2.1E-15 100.0 8.2 72 193-271 122-201 (204)
425 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 2E-10 4.4E-15 94.2 9.8 101 171-271 50-162 (168)
426 PRK00093 GTP-binding protein D 99.2 1.1E-10 2.3E-15 111.3 9.2 76 193-270 257-339 (435)
427 cd04171 SelB SelB subfamily. 99.2 3E-10 6.6E-15 92.5 10.6 100 172-271 52-162 (164)
428 TIGR02729 Obg_CgtA Obg family 99.2 1.6E-10 3.4E-15 106.5 9.8 197 32-273 101-327 (329)
429 PRK12299 obgE GTPase CgtA; Rev 99.1 1.3E-10 2.8E-15 107.3 8.7 204 32-271 102-324 (335)
430 TIGR03594 GTPase_EngA ribosome 99.1 8.9E-11 1.9E-15 111.6 7.2 77 193-270 256-339 (429)
431 cd00880 Era_like Era (E. coli 99.1 2.1E-10 4.6E-15 91.6 8.3 77 193-271 77-160 (163)
432 cd03275 ABC_SMC1_euk Eukaryoti 99.1 4E-11 8.7E-16 106.1 4.3 34 176-209 154-194 (247)
433 cd04159 Arl10_like Arl10-like 99.1 1.9E-10 4.1E-15 92.6 7.5 77 193-271 69-157 (159)
434 cd04139 RalA_RalB RalA/RalB su 99.1 1.8E-10 3.8E-15 93.9 7.3 97 173-271 50-158 (164)
435 cd04154 Arl2 Arl2 subfamily. 99.1 2.6E-10 5.7E-15 94.8 8.3 96 173-270 60-170 (173)
436 PRK00635 excinuclease ABC subu 99.1 3.4E-10 7.4E-15 121.6 10.6 49 161-209 792-847 (1809)
437 cd01897 NOG NOG1 is a nucleola 99.1 3.7E-10 8E-15 92.9 8.5 76 193-272 81-165 (168)
438 COG3845 ABC-type uncharacteriz 99.1 5.6E-10 1.2E-14 105.4 10.4 141 69-209 272-438 (501)
439 PRK14974 cell division protein 99.1 9E-10 2E-14 101.5 11.5 172 80-270 139-325 (336)
440 KOG0060 Long-chain acyl-CoA tr 99.1 3.3E-10 7.3E-15 108.5 8.8 140 55-205 437-601 (659)
441 cd03280 ABC_MutS2 MutS2 homolo 99.1 1.1E-10 2.3E-15 100.1 4.8 32 178-209 93-125 (200)
442 PF02421 FeoB_N: Ferrous iron 99.1 6.3E-11 1.4E-15 97.7 3.0 71 193-268 80-154 (156)
443 cd04165 GTPBP1_like GTPBP1-lik 99.1 8.7E-10 1.9E-14 96.3 10.3 103 171-273 84-221 (224)
444 cd04113 Rab4 Rab4 subfamily. 99.1 2.5E-10 5.4E-15 93.3 6.4 96 174-271 52-158 (161)
445 smart00173 RAS Ras subfamily o 99.1 6.1E-10 1.3E-14 91.2 8.5 76 193-270 73-157 (164)
446 PRK12296 obgE GTPase CgtA; Rev 99.1 1.2E-09 2.5E-14 105.3 11.6 74 31-104 102-182 (500)
447 cd04119 RJL RJL (RabJ-Like) su 99.1 3.3E-10 7.3E-15 92.5 6.8 52 217-270 111-162 (168)
448 PRK03003 GTP-binding protein D 99.1 6.3E-10 1.4E-14 107.4 9.8 77 193-271 295-378 (472)
449 COG1160 Predicted GTPases [Gen 99.1 8.3E-10 1.8E-14 103.6 10.1 141 82-270 4-160 (444)
450 cd01884 EF_Tu EF-Tu subfamily. 99.1 7.8E-10 1.7E-14 94.6 9.1 153 83-263 4-171 (195)
451 cd04137 RheB Rheb (Ras Homolog 99.1 1E-09 2.2E-14 91.6 9.5 96 173-270 51-158 (180)
452 COG4170 SapD ABC-type antimicr 99.0 9.6E-11 2.1E-15 100.0 3.2 142 67-208 19-192 (330)
453 cd04136 Rap_like Rap-like subf 99.0 6.8E-10 1.5E-14 90.6 8.0 94 176-271 54-159 (163)
454 PF00009 GTP_EFTU: Elongation 99.0 4E-11 8.7E-16 101.5 0.7 102 170-271 69-183 (188)
455 PRK09518 bifunctional cytidyla 99.0 9E-10 2E-14 111.2 10.4 76 193-270 534-616 (712)
456 cd04157 Arl6 Arl6 subfamily. 99.0 6.8E-10 1.5E-14 90.5 7.7 96 174-271 48-160 (162)
457 cd01863 Rab18 Rab18 subfamily. 99.0 1.5E-09 3.3E-14 88.5 9.5 96 172-270 50-157 (161)
458 cd00154 Rab Rab family. Rab G 99.0 6.1E-10 1.3E-14 89.4 6.9 97 172-270 50-157 (159)
459 cd01889 SelB_euk SelB subfamil 99.0 8.3E-10 1.8E-14 93.6 8.1 100 171-270 68-181 (192)
460 PRK00349 uvrA excinuclease ABC 99.0 1.3E-09 2.9E-14 112.1 11.0 39 171-209 824-868 (943)
461 smart00178 SAR Sar1p-like memb 99.0 1.6E-09 3.5E-14 91.3 9.6 144 79-270 15-180 (184)
462 cd01864 Rab19 Rab19 subfamily. 99.0 1.1E-09 2.4E-14 90.1 8.4 99 172-271 53-162 (165)
463 KOG0064 Peroxisomal long-chain 99.0 6.6E-10 1.4E-14 105.6 7.8 135 55-205 485-643 (728)
464 PF03029 ATP_bind_1: Conserved 99.0 2.2E-10 4.8E-15 100.9 4.4 174 86-271 1-233 (238)
465 cd01860 Rab5_related Rab5-rela 99.0 1.4E-09 3E-14 88.9 8.8 96 174-271 53-159 (163)
466 cd01881 Obg_like The Obg-like 99.0 1E-09 2.2E-14 90.6 8.0 54 216-271 120-173 (176)
467 KOG1489 Predicted GTP-binding 99.0 7.6E-10 1.6E-14 99.3 7.6 74 193-270 276-362 (366)
468 cd01894 EngA1 EngA1 subfamily. 99.0 1.7E-09 3.7E-14 87.3 9.0 72 193-270 78-153 (157)
469 cd04145 M_R_Ras_like M-Ras/R-R 99.0 1.6E-09 3.4E-14 88.5 8.6 95 175-271 54-160 (164)
470 cd04156 ARLTS1 ARLTS1 subfamil 99.0 1.2E-09 2.6E-14 89.1 7.9 95 174-270 47-157 (160)
471 PRK14723 flhF flagellar biosyn 99.0 3.2E-09 6.9E-14 106.4 12.3 168 79-268 183-368 (767)
472 cd04138 H_N_K_Ras_like H-Ras/N 99.0 2E-09 4.3E-14 87.4 9.1 52 217-271 107-158 (162)
473 PRK12297 obgE GTPase CgtA; Rev 99.0 1.8E-09 3.9E-14 102.5 10.0 73 32-104 102-181 (424)
474 cd04166 CysN_ATPS CysN_ATPS su 99.0 1.6E-09 3.6E-14 93.3 8.7 103 171-273 77-192 (208)
475 cd04175 Rap1 Rap1 subgroup. T 99.0 2.1E-09 4.5E-14 88.2 8.9 95 175-271 53-159 (164)
476 cd04106 Rab23_lke Rab23-like s 99.0 1.6E-09 3.6E-14 88.3 8.2 98 172-271 52-159 (162)
477 PRK06995 flhF flagellar biosyn 99.0 2.2E-09 4.8E-14 103.0 10.2 167 78-268 253-436 (484)
478 cd01876 YihA_EngB The YihA (En 99.0 2.7E-09 5.8E-14 86.7 9.2 55 216-272 110-168 (170)
479 KOG2355 Predicted ABC-type tra 99.0 7.2E-10 1.6E-14 94.4 5.9 148 55-209 17-182 (291)
480 smart00175 RAB Rab subfamily o 99.0 1.1E-09 2.3E-14 89.4 6.8 95 174-270 52-157 (164)
481 PRK04213 GTP-binding protein; 99.0 5.6E-09 1.2E-13 88.9 11.3 55 216-271 130-188 (201)
482 cd01862 Rab7 Rab7 subfamily. 99.0 1.2E-09 2.6E-14 89.9 6.9 95 175-270 53-162 (172)
483 PRK09866 hypothetical protein; 99.0 4.1E-09 8.9E-14 103.1 11.5 101 171-271 230-349 (741)
484 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 3.7E-09 8.1E-14 90.2 10.1 95 175-270 54-163 (201)
485 cd01890 LepA LepA subfamily. 99.0 2E-09 4.3E-14 89.5 8.2 98 172-272 68-174 (179)
486 cd04110 Rab35 Rab35 subfamily. 99.0 3.2E-09 6.9E-14 90.7 9.6 95 174-270 58-162 (199)
487 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 2.6E-09 5.6E-14 89.1 8.9 98 172-271 60-172 (174)
488 TIGR03598 GTPase_YsxC ribosome 99.0 3E-09 6.6E-14 89.2 9.2 72 193-264 102-179 (179)
489 cd00878 Arf_Arl Arf (ADP-ribos 99.0 2.4E-09 5.1E-14 87.2 8.2 97 172-270 44-155 (158)
490 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 3.9E-09 8.5E-14 86.7 9.3 95 174-270 54-159 (166)
491 cd04151 Arl1 Arl1 subfamily. 99.0 1.6E-09 3.5E-14 88.5 6.8 98 172-271 44-156 (158)
492 cd00876 Ras Ras family. The R 98.9 5.9E-09 1.3E-13 84.4 9.8 76 193-270 72-156 (160)
493 cd04127 Rab27A Rab27a subfamil 98.9 2.5E-09 5.4E-14 89.1 7.8 97 173-271 65-173 (180)
494 cd00882 Ras_like_GTPase Ras-li 98.9 2.4E-09 5.1E-14 84.3 7.2 98 172-270 46-155 (157)
495 cd04114 Rab30 Rab30 subfamily. 98.9 3.2E-09 6.9E-14 87.3 8.2 77 193-271 81-165 (169)
496 cd04123 Rab21 Rab21 subfamily. 98.9 5.2E-09 1.1E-13 84.9 9.4 95 174-270 52-157 (162)
497 cd04149 Arf6 Arf6 subfamily. 98.9 2.5E-09 5.5E-14 88.9 7.6 97 173-271 55-166 (168)
498 TIGR03156 GTP_HflX GTP-binding 98.9 3E-09 6.5E-14 98.9 8.8 71 193-271 270-348 (351)
499 KOG0065 Pleiotropic drug resis 98.9 5.5E-10 1.2E-14 115.6 4.2 137 69-208 129-294 (1391)
500 cd01861 Rab6 Rab6 subfamily. 98.9 1.3E-09 2.7E-14 88.9 5.5 96 174-271 52-158 (161)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=9.6e-30 Score=223.94 Aligned_cols=145 Identities=26% Similarity=0.272 Sum_probs=124.8
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|+++..+.+.++...+|++++|+||||||||||||+|+|+++|. |.|.+++.++.+....++.+.++|+||.+.
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 33466777777777889999999999999999999999999998 999999999999999999999999999852
Q ss_pred ---HHHHhcCCCccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 139 ---RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 139 ---~~~~~~~~~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+.+.+|..++... .++.+.+.++|+.+......++.+.+ ||||+||+.|||||+ +|+|++|| ||+.+|.
T Consensus 92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 5667787776543 34555677789988888888888888 999999999999999 89999999 9999986
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 172 ~~ 173 (258)
T COG1120 172 AH 173 (258)
T ss_pred HH
Confidence 43
No 2
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.95 E-value=2.7e-28 Score=209.27 Aligned_cols=189 Identities=58% Similarity=0.942 Sum_probs=155.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L 162 (275)
.++|+||+|||||||++.+++.+.+..++.+..+++....+.++.++.++++|+....+..++|+||..+.++.....+|
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999988877668889999887777788888899888766555689999998877776556666
Q ss_pred HHhhc-ccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhHHHHHH
Q 023913 163 EELSN-LFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMER 241 (275)
Q Consensus 163 ~~l~~-~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~ 241 (275)
..+.. ....|.+++||.|..+...+...+.+..|+++|++++++.+.+...|+..||++++||+|+.+...++++.+.+
T Consensus 83 ~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~ 162 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMER 162 (199)
T ss_pred HHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHHH
Confidence 66542 34689999998885433333344457789999999998877665679999999999999998654467888999
Q ss_pred HHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 242 DALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.++++||.++++++|+++|+|+++|+++..
T Consensus 163 ~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 163 DAKKMRGEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999999999998754
No 3
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.95 E-value=2e-28 Score=204.94 Aligned_cols=180 Identities=48% Similarity=0.715 Sum_probs=153.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhc-CCCccchHHHHHHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHAAIREDISINLG 160 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~-~~~~~~~~~~~~~~~~ 160 (275)
..+++.||+|||||||+..++..++...+++++.+|+.+..|+++.++. +..+...++++ +| + .+...+..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~C-H----~da~m~~~ 85 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGC-H----LDASMNLE 85 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCcc-C----CcHHHHHH
Confidence 5899999999999999999999888778999999999987777776662 34445556677 77 4 34455666
Q ss_pred HHHHhhcccc-cccccccChhHHHHHHHHHHhcC-ceEEEEeCCCCCCcccc-ccccccccCEEEEecCCCCccchhhHH
Q 023913 161 PLEELSNLFK-ADLLLCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRK-GGPGITQADLLVINKTDLASAIGADLA 237 (275)
Q Consensus 161 ~L~~l~~~~~-~d~~~~eS~G~~q~~~laral~~-~~vlllD~t~g~d~~~~-~~~~i~~adiivlNK~Dl~~~~~~~~~ 237 (275)
+++++..+.. .|.+++||+| +..+.++..|.+ -.|+++|.+.|++.|.| ++.+++ ||++||||+||++..+++++
T Consensus 86 ai~~l~~~~~~~Dll~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~-aDllVInK~DLa~~v~~dle 163 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK-ADLLVINKTDLAPYVGADLE 163 (202)
T ss_pred HHHHHhhcCCcCCEEEEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeE-eeEEEEehHHhHHHhCccHH
Confidence 7777766543 7999999999 777888888885 99999999999999999 555555 99999999999999889999
Q ss_pred HHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 238 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 238 ~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.+.++++||.+||+++|.++|+|+++|+++..
T Consensus 164 vm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 164 VMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999998754
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=207.51 Aligned_cols=145 Identities=21% Similarity=0.146 Sum_probs=117.6
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-ChHHHHHhccccCchhHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRAV 141 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~~ 141 (275)
+|++.+++.+.+....+|++++|+||+||||||||+||.++.+++ |+|.+.+.++... +...+++++|+|||.+..+.
T Consensus 11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 677888888888888999999999999999999999999999998 9999999766433 34567889999999875333
Q ss_pred HhcCCCccch----------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 142 ETGGCPHAAI----------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 142 ~~~~~~~~~~----------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
.++...++.. .+....+.+.|+.+++.+..+.++.. ||||+||++|||||+ +|+++|+| ||+.+|+-
T Consensus 91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPE 170 (240)
T COG1126 91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170 (240)
T ss_pred cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHH
Confidence 3222222221 22335567788899888888888888 999999999999999 99999999 88888863
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.6e-27 Score=209.06 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=117.5
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+.|.+ . +++.+.++...+|++++|+||||||||||+|+|+|+++|. |+|.+.+.+.....+ ..+||||
T Consensus 8 ~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYV 80 (254)
T COG1121 8 ENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYV 80 (254)
T ss_pred eeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEc
Confidence 344555554 4 5666777778889999999999999999999999999998 999999877654322 3579999
Q ss_pred Cchh----------HHHHHhcCCCccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEER----------IRAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
||.. .+++.++......+ +.+.+.+.++|++++.....++.+.+ ||||+||+.|||||+ +|++
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 9964 14455554433321 34456778899999999899999999 999999999999999 8999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+||| |++|.|...
T Consensus 161 llLDEP~~gvD~~~ 174 (254)
T COG1121 161 LLLDEPFTGVDVAG 174 (254)
T ss_pred EEecCCcccCCHHH
Confidence 9999 899998654
No 6
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.94 E-value=1.8e-26 Score=206.57 Aligned_cols=198 Identities=21% Similarity=0.199 Sum_probs=156.5
Q ss_pred ccCCCCCCCCCCccccccccCC-CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchh
Q 023913 59 IYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~-geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
+...| ++.+..++..|..+ +.+++|+|+|||||||||+.+++.+....++.++.+|+.+..|+++.+..|. +
T Consensus 84 il~~n---~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~-p--- 156 (290)
T PRK10463 84 VLDKN---NRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT-P--- 156 (290)
T ss_pred HHHHh---HHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC-c---
Confidence 44455 66777788888765 9999999999999999999999988777788899999987777777766553 1
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccc
Q 023913 138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGI 215 (275)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i 215 (275)
... ..+||.||.....+.. ++..+. ....+.+++|+.|. .-+. .+.+. ...++|++.+.|++.+.+++.||
T Consensus 157 vvq-i~tG~~Chl~a~mv~~---Al~~L~-~~~~d~liIEnvGnLvcPa--~fdlge~~~v~vlsV~eg~dkplKyp~~f 229 (290)
T PRK10463 157 AIQ-VNTGKGCHLDAQMIAD---AAPRLP-LDDNGILFIENVGNLVCPA--SFDLGEKHKVAVLSVTEGEDKPLKYPHMF 229 (290)
T ss_pred EEE-ecCCCCCcCcHHHHHH---HHHHHh-hcCCcEEEEECCCCccCCC--ccchhhceeEEEEECccccccchhccchh
Confidence 111 2567888876655544 455543 34569999998884 1122 22344 56789999999999899999999
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+.||++||||+|+++...++++.+.+.+++++|.++|+++|+++|+|+++|++++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L 284 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWL 284 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 9999999999999986456788899999999999999999999999999999875
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=6.3e-26 Score=196.65 Aligned_cols=141 Identities=21% Similarity=0.169 Sum_probs=115.1
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~ 142 (275)
+|++++++.+.++...+|++++|+||+||||||+|++|.+++.|+ |+|.+++.++.+.+..+++++|||+-|..
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi----- 84 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI----- 84 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc-----
Confidence 566788888888888999999999999999999999999999999 99999999999999999999999998874
Q ss_pred hcCCCccchH--------------HH-HHHHHHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 143 TGGCPHAAIR--------------ED-ISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 143 ~~~~~~~~~~--------------~~-~~~~~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+.+|+.+.. +. ..++.+.|+.+++.. ..++++.| ||||+||+.+||||+ +|+|+|+| |.
T Consensus 85 -gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF 163 (309)
T COG1125 85 -GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF 163 (309)
T ss_pred -ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence 223333221 11 233455666666643 57888888 999999999999999 99999999 66
Q ss_pred CCCCcccc
Q 023913 203 GGDKIPRK 210 (275)
Q Consensus 203 ~g~d~~~~ 210 (275)
..+|+..+
T Consensus 164 gALDpI~R 171 (309)
T COG1125 164 GALDPITR 171 (309)
T ss_pred cccChhhH
Confidence 77776543
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=7.4e-26 Score=205.01 Aligned_cols=146 Identities=21% Similarity=0.158 Sum_probs=112.7
Q ss_pred CCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH
Q 023913 64 YFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (275)
Q Consensus 64 ~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~ 141 (275)
+|+ +..++.+.++...+|++++|+||||||||||||+|+|+++|+ |+|.+.+.++... ..+.++++||+||++..+.
T Consensus 13 ~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred EeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCc
Confidence 455 467777777788889999999999999999999999999999 9999999887654 5677889999999974222
Q ss_pred HhcCCCccch---------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~~~---------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+++..+..+ ......+.+.++.+.+....+..+.. |+||+||+.||.+|+ +|.++||| |++|+|+..
T Consensus 92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~ 171 (293)
T COG1131 92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171 (293)
T ss_pred cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH
Confidence 2222221111 11223455677777776544555666 999999999999999 99999999 999999765
Q ss_pred c
Q 023913 210 K 210 (275)
Q Consensus 210 ~ 210 (275)
.
T Consensus 172 ~ 172 (293)
T COG1131 172 R 172 (293)
T ss_pred H
Confidence 4
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.2e-26 Score=196.61 Aligned_cols=142 Identities=18% Similarity=0.064 Sum_probs=111.1
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
.|+...++.+.++...+||+++|+||+|||||||||+|+|+.+|+ |+|.+.+..+... ...++|+||+..
T Consensus 12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW 86 (248)
T COG1116 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPW 86 (248)
T ss_pred EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccch
Confidence 345566777777778889999999999999999999999999999 9999998776322 246899999863
Q ss_pred ----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 ----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+|+.++.... ..-.+..+.+.+.|+.+++....+..+.+ ||||+||++|||||+ +|+|+++| |...+|...+
T Consensus 87 ~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR 166 (248)
T COG1116 87 LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 (248)
T ss_pred hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence 3333332221 12222334677789999888888888999 999999999999999 99999999 7777776543
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=7.4e-26 Score=188.54 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=119.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRN 130 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~i 130 (275)
++|+..|++ +.+++.+.++...+||++-|+||+|||||||||+|++..+|+ |+|.+.+.++..... .-++++|
T Consensus 5 ~~V~k~Y~~---g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 5 ENVSKAYPG---GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred hhhhhhcCC---CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 467778888 766788888888899999999999999999999999999999 999999999987643 3477899
Q ss_pred cccCchhH--------HHHHhcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 131 GALPEERI--------RAVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 131 g~v~q~~~--------~~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
|+|||+.- +++.+....... -.+....+.+.|+.+++.++....+.+ |+|++||++||||++ +|.++|.
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA 161 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA 161 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence 99999963 233222211111 122234566688888888888888888 999999999999999 8999999
Q ss_pred e-CCCCCCcc
Q 023913 200 D-VSGGDKIP 208 (275)
Q Consensus 200 D-~t~g~d~~ 208 (275)
| ||..+|+.
T Consensus 162 DEPTGNLDp~ 171 (223)
T COG2884 162 DEPTGNLDPD 171 (223)
T ss_pred cCCCCCCChH
Confidence 9 66667754
No 11
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-25 Score=188.20 Aligned_cols=186 Identities=18% Similarity=0.114 Sum_probs=129.1
Q ss_pred CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH
Q 023913 64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (275)
Q Consensus 64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~ 141 (275)
+|+... ++.++++..++|++++|+|+|||||||+|++|++++.|+ |+|.+++.|... .+...+++||+++.+...+.
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~glY~ 88 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYA 88 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCcChhh
Confidence 455554 677777778889999999999999999999999999999 999999998754 45678889999986542222
Q ss_pred HhcCCCcc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.++...+. .-.+..+++.+..+.|.+....++.+.+ |.||+||+.|||||+ +|.++|+| |++|+|+..
T Consensus 89 RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~ 168 (245)
T COG4555 89 RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168 (245)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHH
Confidence 22221111 1111123334455666667778888888 999999999999999 89999999 999999754
Q ss_pred cc-----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEE
Q 023913 210 KG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254 (275)
Q Consensus 210 ~~-----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~ 254 (275)
.. ..|.+.....|+= .++...+++.+.+.+--+..+-.++.
T Consensus 169 ~r~~~dfi~q~k~egr~viF----SSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 169 RRKFHDFIKQLKNEGRAVIF----SSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred HHHHHHHHHHhhcCCcEEEE----ecccHHHHHHhhheEEEEecCcEEEc
Confidence 32 2334443433331 23433556666665555555444443
No 12
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.8e-25 Score=213.87 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=123.3
Q ss_pred CCCCC---ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH
Q 023913 50 GLAPH---SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE 125 (275)
Q Consensus 50 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~ 125 (275)
..+|. .+|.|.||.+ ++.+++.+.++...+|++++|+||+|+||||+.++|..+|.|+ |+|.+++.|+.+.+...
T Consensus 461 ~~~G~IeF~~VsFaYP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 (716)
T ss_pred cccceEEEEEeeeecCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHH
Confidence 46666 9999999992 1223444555566779999999999999999999999999999 99999999999999999
Q ss_pred HHHhccccCchhH------HHHHhcCCCccchHHHHHHH-HHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHh
Q 023913 126 FLMRNGALPEERI------RAVETGGCPHAAIREDISIN-LGPLEELS--NLFKADLLLCE-----SGGDNLAANFSREL 191 (275)
Q Consensus 126 ~~~~ig~v~q~~~------~~~~~~~~~~~~~~~~~~~~-~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral 191 (275)
++++||+|.|+|. ..+...|+..++..+....+ +....+|. ...+++..++| |||||||++|||||
T Consensus 540 lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 9999999999984 22334455565543322111 11122221 24578889998 99999999999999
Q ss_pred c-CceEEEEe-CCCCCCcccc
Q 023913 192 A-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 192 ~-~~~vlllD-~t~g~d~~~~ 210 (275)
+ +|.|+||| +|+.+|....
T Consensus 620 lr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESE 640 (716)
T ss_pred hcCCCEEEEechhhhcchhhH
Confidence 9 99999999 7878886543
No 13
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.92 E-value=5.2e-25 Score=218.87 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=137.3
Q ss_pred cccCCCCCCC---ccccccCCCCCCCCCCccccccc-cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913 45 YHSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (275)
Q Consensus 45 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~ 119 (275)
....+..+|. +++.|.|.. +.+.++++.++ .++|++++|+|++|||||||+|+|+|+++|+ |+|.+++.|+.
T Consensus 462 ~~~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 462 LIHLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccCceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 4556667777 888999988 65655555555 5669999999999999999999999999998 99999999999
Q ss_pred CCChHHHHHhccccCchhH------HHHHhcCCCccchHHHH-HHHHHHHHHhh--ccccccccccc-----ChhHHHHH
Q 023913 120 TKEDGEFLMRNGALPEERI------RAVETGGCPHAAIREDI-SINLGPLEELS--NLFKADLLLCE-----SGGDNLAA 185 (275)
Q Consensus 120 ~~~~~~~~~~ig~v~q~~~------~~~~~~~~~~~~~~~~~-~~~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~ 185 (275)
..+...+++.+|||+|++. +.+...+.+.++..+-. +.....+.++. ...+++..+.| |||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 9999999999999999974 22223344555533322 12222333332 34578889988 99999999
Q ss_pred HHHHHhc-CceEEEEe-CCCCCCccccc---------------------cccccccCEEEEecCCCC
Q 023913 186 NFSRELA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLA 229 (275)
Q Consensus 186 ~laral~-~~~vlllD-~t~g~d~~~~~---------------------~~~i~~adiivlNK~Dl~ 229 (275)
+|||+++ +|+|+||| ||+.+|...+. ...++.||.|++.+--.+
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gki 685 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKI 685 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCce
Confidence 9999999 99999999 78888864431 123567887776664444
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.3e-25 Score=190.42 Aligned_cols=151 Identities=20% Similarity=0.138 Sum_probs=121.1
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhcc
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNG 131 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig 131 (275)
++.-.||+ +.+++.++++...+||+++|+|++||||||||++|.|+.+|+ |+|.+.+.++..... ..+++++|
T Consensus 8 nl~k~yp~---~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 8 NLSKTYPG---GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred eeeeecCC---CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 44556776 788888888888999999999999999999999999999999 999999988877653 34567899
Q ss_pred ccCchhH--------HHHHhcCCCccch---------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-
Q 023913 132 ALPEERI--------RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA- 192 (275)
Q Consensus 132 ~v~q~~~--------~~~~~~~~~~~~~---------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~- 192 (275)
|++|.+. +++..+...+.+. +++...++++|++++..+..-..... ||||+||++|||+|+
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 9999873 4555554433321 45556677888888776655544555 999999999999999
Q ss_pred CceEEEEe-CCCCCCccc
Q 023913 193 DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 ~~~vlllD-~t~g~d~~~ 209 (275)
+|+|+|.| |.+.+|+..
T Consensus 165 ~pkiILADEPvasLDp~~ 182 (258)
T COG3638 165 QPKIILADEPVASLDPES 182 (258)
T ss_pred CCCEEecCCcccccChhh
Confidence 89999999 888998754
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3e-25 Score=191.13 Aligned_cols=146 Identities=24% Similarity=0.189 Sum_probs=116.2
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR 139 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~ 139 (275)
+|+++.+..+.++...+|++++|+|++|||||||||+|+|+++|+ |+|.+.+.++.+.+.. ++++++|++||....
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 677888888888888999999999999999999999999999999 9999999998877543 456789999998642
Q ss_pred --------HHHhcCCCccchHHHH--HHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 140 --------AVETGGCPHAAIREDI--SINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 140 --------~~~~~~~~~~~~~~~~--~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
|+.+....+..+.+.. ..+...|+.+++... .++.+.| ||||++|++||||++ +|.++++| ||+|+
T Consensus 97 FssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGL 176 (263)
T COG1127 97 FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGL 176 (263)
T ss_pred ccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 3322222222222221 334456677777766 7888899 999999999999999 99999999 99999
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|+..
T Consensus 177 DPI~ 180 (263)
T COG1127 177 DPIS 180 (263)
T ss_pred Ccch
Confidence 9754
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=8.1e-25 Score=189.30 Aligned_cols=140 Identities=19% Similarity=0.074 Sum_probs=101.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---H-HHhccccCchhH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI----- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~----- 138 (275)
.++.+.++...+||+++|+||+||||||||++|.|+.+|+ |.+.+.+.++...+..+ + ++.+||+||+..
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 3555666667889999999999999999999999999999 99999998888765432 3 346999999862
Q ss_pred ---HHHHhcCCCccchH-HHHHHHHHHHHHhhcccccc-ccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ---RAVETGGCPHAAIR-EDISINLGPLEELSNLFKAD-LLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ---~~~~~~~~~~~~~~-~~~~~~~~~L~~l~~~~~~d-~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.+......... .........++.++..+... ..+.+ ||||+||++|||||+ +|.+++.| ||..+|..
T Consensus 99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 33332111100001 11223334555556654444 66777 999999999999999 89999999 77777754
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=4.4e-25 Score=202.33 Aligned_cols=143 Identities=17% Similarity=0.072 Sum_probs=115.4
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
.|++..++.+.++...+||+++|+||+||||||||++|+|+..|+ |+|.+.+.++....+. .|.+|+|||+-.
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPH 91 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPH 91 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCC
Confidence 677777888888888999999999999999999999999999999 9999999999876543 578999999852
Q ss_pred ----HHHHhcCCCccchH-H-HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ----RAVETGGCPHAAIR-E-DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ----~~~~~~~~~~~~~~-~-~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+|+.++........ + ...++.++|+.+.+....++.+.+ ||||+||+++||||+ +|.|+||| |.+.+|..
T Consensus 92 ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 44445444221111 2 224566778888777778888888 999999999999999 99999999 77777754
No 18
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-24 Score=193.80 Aligned_cols=141 Identities=18% Similarity=0.060 Sum_probs=111.4
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR----- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~----- 139 (275)
.++.++++...+|+++||+|++|||||||++++.++.+|+ |+|.+++.++...+.. .++++||++||.+..
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 3555666777889999999999999999999999999999 9999999888877644 456789999999742
Q ss_pred ---HHHhcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 ---AVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ---~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+....... -.+...++.+.|+.+++.++.+.++.+ ||||+||++|||||+ +|+|+|.| +|+.+|+..
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 22221111111 122335567788888888888888888 999999999999999 99999999 788888643
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.91 E-value=6.6e-24 Score=193.47 Aligned_cols=145 Identities=19% Similarity=0.156 Sum_probs=107.7
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....++.+||+||++.
T Consensus 17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR-ARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc-hHHHHhcEEEEeccCcCCCCC
Confidence 44455666777777889999999999999999999999999998 9999999887543 3456778999999863
Q ss_pred ---HHHHh-cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 ---RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 ---~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+ .........+....+.+.++.+......+..+.. |+||+||++||++|+ +|+++||| |++|+|+..+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 22221 1111111111122334566666666666777777 999999999999999 99999999 9999998654
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.91 E-value=9.5e-25 Score=199.14 Aligned_cols=143 Identities=13% Similarity=-0.001 Sum_probs=110.1
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~ 142 (275)
+|++..++.+.++...+||+++|+||+|||||||||+|+|+.+|+ |+|.+.+.++....+. .|++++|||+...+..
T Consensus 12 ~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~iamVFQ~yALyPh 89 (338)
T COG3839 12 SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIAMVFQNYALYPH 89 (338)
T ss_pred EcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEEEEeCCccccCC
Confidence 444444666677777889999999999999999999999999999 9999999999887664 3789999998643222
Q ss_pred --------hcCCCccchHHH-HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 143 --------TGGCPHAAIRED-ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 143 --------~~~~~~~~~~~~-~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
++.......++. .+++.+..+.+...+..++.+.+ ||||+||+++|||++ +|.++|+| |.+.+|..
T Consensus 90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 222111111222 24455567777777788888888 999999999999999 99999999 77777754
No 21
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=2.2e-24 Score=186.70 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=106.0
Q ss_pred cccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhc
Q 023913 56 HEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRN 130 (275)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~i 130 (275)
+..+.|++ .. .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+
T Consensus 6 ~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 6 QVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc
Confidence 34455544 32 3555666666889999999999999999999999999998 9999988776543322 356789
Q ss_pred cccCchhHHH--------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 131 GALPEERIRA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 131 g~v~q~~~~~--------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
+|++|++..+ +.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986311 11110000 00111123345566776665555666666 999999999999999 9999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| |++++|...
T Consensus 163 DEPt~~LD~~~ 173 (216)
T TIGR00960 163 DEPTGNLDPEL 173 (216)
T ss_pred eCCCCcCCHHH
Confidence 9 899988654
No 22
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.90 E-value=1.3e-23 Score=193.98 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=108.0
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
+|++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++... ....++.+||+||++.
T Consensus 50 ~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~ 128 (340)
T PRK13536 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLE 128 (340)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCccCCCC
Confidence 344556666777777889999999999999999999999999998 9999999887543 3456678999999852
Q ss_pred ----HHHHh-cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 ----RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 ----~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+ .........+......+.++.+......+..+.+ |+||+||+.||++|+ +|+++||| |++|+|+...
T Consensus 129 ~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r 208 (340)
T PRK13536 129 FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208 (340)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 22221 1111111111122334456666666566777777 999999999999999 89999999 9999997653
No 23
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.5e-24 Score=187.72 Aligned_cols=152 Identities=21% Similarity=0.135 Sum_probs=116.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC-CChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~-~~~~~~~~~ig~ 132 (275)
.+..|.|++ +..++.+.++...+|+.++|+|+||||||||+++|+|+++|+ |.|.+.+.+... ....++++++||
T Consensus 7 ~~l~~~y~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~ 83 (235)
T COG1122 7 ENLSFRYPG---RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGL 83 (235)
T ss_pred EEEEEEcCC---CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEE
Confidence 345677777 434455555666779999999999999999999999999999 999888877663 456778899999
Q ss_pred cCchhHH---------HHHhcCCCccch--HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 133 LPEERIR---------AVETGGCPHAAI--REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 133 v~q~~~~---------~~~~~~~~~~~~--~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
++|++.. .+.++ +.+... .+...++.++++.++.....++.+.+ |+||+||++||.+|+ +|.++|+
T Consensus 84 VfQnpd~q~~~~tV~~evafg-~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL 162 (235)
T COG1122 84 VFQNPDDQLFGPTVEDEVAFG-LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL 162 (235)
T ss_pred EEECcccccccCcHHHHHhhc-hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence 9999842 22233 222222 22335566678888777667777777 999999999999999 9999999
Q ss_pred e-CCCCCCcccc
Q 023913 200 D-VSGGDKIPRK 210 (275)
Q Consensus 200 D-~t~g~d~~~~ 210 (275)
| ||+++|...+
T Consensus 163 DEPta~LD~~~~ 174 (235)
T COG1122 163 DEPTAGLDPKGR 174 (235)
T ss_pred cCCCCCCCHHHH
Confidence 9 8999997653
No 24
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.5e-24 Score=185.72 Aligned_cols=143 Identities=24% Similarity=0.165 Sum_probs=104.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~----- 138 (275)
+.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 44566666667889999999999999999999999999998 999998887755432 345667999999852
Q ss_pred ---HHHHhcCCC--ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 ---RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 ---~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...+
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 172 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 122221111 111111123344566777665555666677 999999999999999 99999999 9999997643
No 25
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.90 E-value=3.5e-24 Score=195.49 Aligned_cols=180 Identities=23% Similarity=0.240 Sum_probs=141.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hH-HHHHhccccCchhHHHH-HhcCCCccchHHHHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DG-EFLMRNGALPEERIRAV-ETGGCPHAAIREDISIN 158 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~-~~~~~ig~v~q~~~~~~-~~~~~~~~~~~~~~~~~ 158 (275)
+++.|.|+.|||||||||.|+.... ..+++++.|++++.. |+ .+... ...+.. ..+||.||+.+.++...
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~~------~~e~~~El~nGCICCT~r~dl~~~ 74 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDGGALLSD------TGEEVVELTNGCICCTVRDDLLPA 74 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC-CCcEEEEEecCccccccCCCcccc------CCccEEEeCCceEEEeccchhHHH
Confidence 6899999999999999999998743 468999999999874 42 22221 112223 37899999999888665
Q ss_pred HHHHHHhhcccccccccccChhHHHHHHHHHHhc-----------CceEEEEeCCCCCCc----cccccccccccCEEEE
Q 023913 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKI----PRKGGPGITQADLLVI 223 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-----------~~~vlllD~t~g~d~----~~~~~~~i~~adiivl 223 (275)
...|.. .+..+|++++|+.|..-+..++.++. ++.|.++|+.+.... ......|+.+||+||+
T Consensus 75 ~~~L~~--~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivl 152 (323)
T COG0523 75 LERLLR--RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVL 152 (323)
T ss_pred HHHHHh--ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEE
Confidence 656655 34559999999999987777776642 568999998776542 3456789999999999
Q ss_pred ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccccee
Q 023913 224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 273 (275)
Q Consensus 224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~~ 273 (275)
||+|++++ +.++++++.++++||.++|+.++. ......++++...|.
T Consensus 153 NK~Dlv~~--~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~~~~~ 199 (323)
T COG0523 153 NKTDLVDA--EELEALEARLRKLNPRARIIETSY-GDVDLAELLDEGLFD 199 (323)
T ss_pred ecccCCCH--HHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhcccccc
Confidence 99999998 568999999999999999999886 667777888776554
No 26
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=1.1e-23 Score=191.71 Aligned_cols=144 Identities=19% Similarity=0.104 Sum_probs=106.4
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCC
Confidence 44555666666667889999999999999999999999999998 999999887754 33456678999999852
Q ss_pred ---HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ---~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+... ......+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++||| |++++|+..
T Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 12211110 0011111122345567777666556777777 999999999999999 89999999 999998754
No 27
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-23 Score=180.91 Aligned_cols=142 Identities=19% Similarity=0.150 Sum_probs=105.9
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hccccCchhH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI--- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~--- 138 (275)
+|+..+++..+++...+|++++|+|+|||||||||++|+|+.++. |+|.+.+.|+....+.++.+ .++|+||.+.
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 677888888888889999999999999999999999999999997 99999999998887666554 6999999863
Q ss_pred -----HHHHhcCCCccc--hH-HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 139 -----RAVETGGCPHAA--IR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 139 -----~~~~~~~~~~~~--~~-~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+|+.++...... .. .+...+.+.+-.+ ....+..-.. |||++|.++|||||+ +|++++|| |+.|+.+
T Consensus 92 ~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~L--ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP 169 (237)
T COG0410 92 RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRL--KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 169 (237)
T ss_pred hCcHHHHHhhhhhcccccccccccHHHHHHHChhH--HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCH
Confidence 444444333321 11 1122222221111 2233444444 999999999999999 99999999 8888764
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9.5e-24 Score=178.95 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=107.1
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCC--ChHHHHHhccccCc
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPE 135 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q 135 (275)
+|++.+++.+++.-..++.+++|+||+||||||||+++..+... +|+|.+.+.++... +..++|+++|+|||
T Consensus 16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence 67778889899888899999999999999999999999997652 28999999998764 57789999999999
Q ss_pred hhH-------HHHHhcCCCccchHHHH-HHHHHHHHHhhccc----ccccc-cccChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 136 ERI-------RAVETGGCPHAAIREDI-SINLGPLEELSNLF----KADLL-LCESGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 136 ~~~-------~~~~~~~~~~~~~~~~~-~~~~~~L~~l~~~~----~~d~~-~~eS~G~~q~~~laral~-~~~vlllD- 200 (275)
.+. +++.++...+......+ ..+...|....++. .++.- +.-||||+||++|||+|+ +|.|+|+|
T Consensus 96 kPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDE 175 (253)
T COG1117 96 KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE 175 (253)
T ss_pred CCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence 873 44445433332221222 12222333222221 22221 222999999999999999 99999999
Q ss_pred CCCCCCcccc
Q 023913 201 VSGGDKIPRK 210 (275)
Q Consensus 201 ~t~g~d~~~~ 210 (275)
|++.+|+.+.
T Consensus 176 PtSALDPIsT 185 (253)
T COG1117 176 PTSALDPIST 185 (253)
T ss_pred cccccCchhH
Confidence 8888998653
No 29
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=2e-23 Score=177.31 Aligned_cols=145 Identities=17% Similarity=0.041 Sum_probs=102.6
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhccccCchhH---
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~--- 138 (275)
|++..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.++|++|++.
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34555666666667889999999999999999999999999998 9999988776421 12345667999999852
Q ss_pred ------HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ------~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.+... ...........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 11111100 0011111112334456666555556666777 999999999999999 89999999 88888864
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 162 ~ 162 (190)
T TIGR01166 162 G 162 (190)
T ss_pred H
Confidence 3
No 30
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=6.8e-24 Score=182.91 Aligned_cols=142 Identities=19% Similarity=0.048 Sum_probs=101.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-HHHhcC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-AVETGG 145 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~~~~~~ 145 (275)
..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.. ......
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 34555555566789999999999999999999999999998 9999988877654445566789999998521 111110
Q ss_pred CCcc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 146 CPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 146 ~~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..+. ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 169 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0000 0111112334456666555455666667 999999999999999 89999999 899988654
No 31
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.90 E-value=1.3e-23 Score=197.54 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=111.8
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++......++++++||++|++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 455666666677889999999999999999999999999998 999999988877666777888999999852
Q ss_pred -HHHHhcCCCcc---c--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~---~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++..++. . ...+...+.+.++.+......++.+.+ |+||+||+.|||+|+ +|+++||| |++++|...
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 33334332221 0 122334455677777766666777777 999999999999999 89999999 999998753
No 32
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=7.2e-24 Score=183.12 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=101.9
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHHHHH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRAVE 142 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~~~ 142 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++..+..
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 344555666666889999999999999999999999999998 9999988877654322 345679999998632111
Q ss_pred hcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 143 TGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 143 ~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.....+ .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 172 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 110000 00111112334566666555555666666 999999999999999 89999999 888988654
No 33
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.4e-24 Score=182.22 Aligned_cols=147 Identities=20% Similarity=0.136 Sum_probs=112.4
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIRAV 141 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~~~ 141 (275)
+|..++++.++++...+||+|+|+|||||||||.+.+++|+.+|+ |+|.+++.|+...+-..+. ..+||+||++..+-
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 788899999999999999999999999999999999999999999 9999999999877644433 46999999974222
Q ss_pred HhcCC--------Ccc-chH--HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 142 ETGGC--------PHA-AIR--EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 142 ~~~~~--------~~~-~~~--~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
.++.. ... ..+ +........|++|...+..+..-.. |||+++|+.|||+|+ +|..++|| |.+|.|+
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDP 172 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172 (243)
T ss_pred cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCc
Confidence 22111 111 111 1112233567777666555554444 999999999999999 99999999 8999987
Q ss_pred ccc
Q 023913 208 PRK 210 (275)
Q Consensus 208 ~~~ 210 (275)
.+.
T Consensus 173 iaV 175 (243)
T COG1137 173 IAV 175 (243)
T ss_pred hhH
Confidence 653
No 34
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=1.8e-23 Score=193.06 Aligned_cols=141 Identities=17% Similarity=0.059 Sum_probs=106.6
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhccccCchhH------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~ig~v~q~~~------ 138 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......+ +++++||+||++.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 4555666667889999999999999999999999999998 99999999887655433 4568999999853
Q ss_pred --HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+... ......+....+.+.++.++.....+..+.+ |+||+||++|||||+ +|+++|+| |++++|...
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t 175 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 22222110 0111112223455677777776677777888 999999999999999 99999999 899998654
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=2.2e-23 Score=180.64 Aligned_cols=142 Identities=22% Similarity=0.106 Sum_probs=100.9
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH----HHHhccccCchhH----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERI---- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~----~~~~ig~v~q~~~---- 138 (275)
+.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+.. .++.++|++|++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 34555565666789999999999999999999999999998 99999887765443222 2457999999852
Q ss_pred ----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 1111111000 01111122344566666655555666666 999999999999999 99999999 888988654
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.89 E-value=6.1e-24 Score=197.43 Aligned_cols=146 Identities=15% Similarity=0.036 Sum_probs=110.9
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~ 138 (275)
+|+...++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+.+.++...++..+ ++.++|++|++.
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 355666777777777889999999999999999999999999999 999999998877666555 568999999852
Q ss_pred --------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 --------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+++.++.... ....+....+.+.++.+.+....+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 2222211000 01111223455667777666666777777 999999999999999 99999999 888988
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 162 ~~~ 164 (363)
T TIGR01186 162 PLI 164 (363)
T ss_pred HHH
Confidence 643
No 37
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.89 E-value=2e-23 Score=203.14 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=112.2
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +.+++.+.++..++|++++|+||+|||||||+++|+|+++|+ |+|.+++.++.+. ..++++.++|+
T Consensus 338 ~~vsf~Y~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V 413 (529)
T TIGR02868 338 RDLSFGYPG---SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVF 413 (529)
T ss_pred EEEEEecCC---CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEE
Confidence 778888876 444555666667889999999999999999999999999998 9999999999988 88999999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
||++. +|+.++ .+..+.. ++..+.+ .+.++. ...+++..+.| ||||+||++|||+++ +|+|
T Consensus 414 ~Q~~~lF~~TI~eNI~~g-~~~~~~e-~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLG-RPDATDE-ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred ccCcccccccHHHHHhcc-CCCCCHH-HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99973 333333 3333222 2222111 233322 23467777776 999999999999999 8999
Q ss_pred EEEe-CCCCCCc
Q 023913 197 YIID-VSGGDKI 207 (275)
Q Consensus 197 lllD-~t~g~d~ 207 (275)
+|+| ||+.+|.
T Consensus 492 liLDE~TSaLD~ 503 (529)
T TIGR02868 492 LLLDEPTEHLDA 503 (529)
T ss_pred EEEeCCcccCCH
Confidence 9999 7877774
No 38
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=5.7e-23 Score=186.89 Aligned_cols=143 Identities=17% Similarity=0.101 Sum_probs=106.0
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcH
Confidence 445666666667889999999999999999999999999999 999999987754 33456678999999863
Q ss_pred -HHHHhcC-CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 -RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 -~~~~~~~-~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+.. .......+....+.+.++.+......++.+.+ |+||+||+.||++|+ +|+++|+| |++|+|...+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1111110 00001111123344566777666666777777 999999999999999 89999999 9999997653
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.7e-24 Score=182.94 Aligned_cols=140 Identities=16% Similarity=0.027 Sum_probs=100.9
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------ 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------ 140 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+.++|+||++..+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEEcCchhhccCCcHH
Confidence 44556666667889999999999999999999999999998 99999888765432 2345799999986311
Q ss_pred --HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 --VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 --~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~ 165 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11110000 00111112334566666655555666666 999999999999999 89999999 999998754
No 40
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=1.5e-23 Score=180.25 Aligned_cols=139 Identities=14% Similarity=0.026 Sum_probs=101.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-HHHhcC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-AVETGG 145 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~~~~~~ 145 (275)
..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.. ..+++.++|++|++.. ....+.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccH
Confidence 44555666666889999999999999999999999999998 999998876642 3455679999998521 111111
Q ss_pred CCccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 146 CPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 146 ~~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..+..+ ......+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 161 (205)
T cd03226 90 REELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN 161 (205)
T ss_pred HHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 111100 01112345567777666566777777 999999999999999 99999999 888988654
No 41
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.5e-23 Score=179.75 Aligned_cols=139 Identities=18% Similarity=0.130 Sum_probs=105.0
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-ChHHHHHhccccCchhHHH------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRA------ 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~------ 140 (275)
.++.++++...+||+++|+|++|||||||.++|+|+.+|+ |+|.+.+.+.... +...+.+.+.+|||++..-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 3666677777889999999999999999999999999999 9999999776543 3446777899999997310
Q ss_pred ----HHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 141 ----VETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 141 ----~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+.-..++ ..+.....++.+.|+.+++.. ..++.+.| ||||+||++|||||+ +|+++|+| |++.+|..
T Consensus 101 v~~~l~Epl~~-~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 101 VGRILSEPLRP-HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred HHHHHhhhhcc-CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHH
Confidence 0001111 011111122566777777654 56777888 999999999999999 99999999 88888863
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.1e-23 Score=182.97 Aligned_cols=143 Identities=20% Similarity=0.107 Sum_probs=103.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------ 139 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------ 139 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++..
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcH
Confidence 344555666666789999999999999999999999999998 999998877653 234556679999998631
Q ss_pred --HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 140 --AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 140 --~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
++.+.... .....+....+.+.++.+......+..+.+ |+||+||++||++++ +|+++|+| |++++|....
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~ 167 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 11111000 011111122345566777665555666777 999999999999999 99999999 9999997643
No 43
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.5e-23 Score=184.19 Aligned_cols=142 Identities=19% Similarity=0.122 Sum_probs=102.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~----- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|+||++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 44555666666889999999999999999999999999998 99999888776543 2345667999999852
Q ss_pred ---HHHHhcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ---RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ---~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 1221111000 00011122334456666555555666666 999999999999999 99999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 174 ~LD~~~ 179 (241)
T cd03256 174 SLDPAS 179 (241)
T ss_pred cCCHHH
Confidence 999754
No 44
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.5e-23 Score=185.15 Aligned_cols=151 Identities=13% Similarity=0.002 Sum_probs=109.7
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++ ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++
T Consensus 9 ~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 9 DLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred EEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 44555553 344566666667889999999999999999999999999998 99999998876555566677899999
Q ss_pred chhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 135 EERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 135 q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
|++. +++.++... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9862 111111000 001111112344566666665556777777 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 166 t~~LD~~~ 173 (274)
T PRK13647 166 MAYLDPRG 173 (274)
T ss_pred CcCCCHHH
Confidence 99998654
No 45
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=2.2e-23 Score=183.52 Aligned_cols=143 Identities=20% Similarity=0.128 Sum_probs=102.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhH----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI---- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~---- 138 (275)
++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 345566666666889999999999999999999999999998 999998877654432 234667999999852
Q ss_pred ----HHHHhcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 ----RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ----~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.++.... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1121111100 00011123344566666555555666666 999999999999999 99999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 174 ~~LD~~~ 180 (243)
T TIGR02315 174 ASLDPKT 180 (243)
T ss_pred ccCCHHH
Confidence 9998754
No 46
>PRK10908 cell division protein FtsE; Provisional
Probab=99.89 E-value=1.7e-23 Score=181.94 Aligned_cols=150 Identities=16% Similarity=0.085 Sum_probs=105.2
Q ss_pred ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccc
Q 023913 57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGA 132 (275)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~ 132 (275)
+.+.|++ .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|
T Consensus 7 l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 83 (222)
T PRK10908 7 VSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGM 83 (222)
T ss_pred eEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence 3445533 345566666667889999999999999999999999999998 9999988877654332 24568999
Q ss_pred cCchhHH--------HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 133 LPEERIR--------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 133 v~q~~~~--------~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
++|++.. ++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (222)
T PRK10908 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163 (222)
T ss_pred EecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9998631 11111000 011111112234456666555445666666 999999999999999 89999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 164 Pt~~LD~~~ 172 (222)
T PRK10908 164 PTGNLDDAL 172 (222)
T ss_pred CCCcCCHHH
Confidence 899998754
No 47
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.7e-23 Score=192.07 Aligned_cols=141 Identities=13% Similarity=-0.024 Sum_probs=106.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||+||++.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCH
Confidence 445555666667789999999999999999999999999998 9999999888655432 368999999863
Q ss_pred -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~ 169 (356)
T PRK11650 94 RENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL 169 (356)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2222221111 11111223445567777766667777777 999999999999999 99999999 899998653
No 48
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.6e-23 Score=195.25 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=119.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
.+++|.|+. +++.+...++..++|+.++|+|+|||||||+||+|++++..+|+|.++|.|+.+.+...+|+.|||+|
T Consensus 355 ~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 778888876 55566566666677999999999999999999999999996699999999999999999999999999
Q ss_pred chhH------HHHHhcCCCccchHHHHHHH-HHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEEE
Q 023913 135 EERI------RAVETGGCPHAAIREDISIN-LGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 135 q~~~------~~~~~~~~~~~~~~~~~~~~-~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlll 199 (275)
|+.. ..+...||+..+..+-.+.. ...+.+.. ...+++..++| ||||+||+++||+++ +|+|+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 9974 23335688888765544322 12333322 23467788888 999999999999999 9999999
Q ss_pred e-CCCCCCcc
Q 023913 200 D-VSGGDKIP 208 (275)
Q Consensus 200 D-~t~g~d~~ 208 (275)
| ||+.+|..
T Consensus 512 DEaTS~LD~~ 521 (591)
T KOG0057|consen 512 DEATSALDSE 521 (591)
T ss_pred cCcccccchh
Confidence 9 78777754
No 49
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.1e-23 Score=183.39 Aligned_cols=143 Identities=16% Similarity=0.044 Sum_probs=103.6
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec---cCCCCChHHHHHhccccCchhH-
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEFLMRNGALPEERI- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~---d~~~~~~~~~~~~ig~v~q~~~- 138 (275)
.|++..+..+.+.....||.++|+|||||||||||++|+|+..|+ |+|.+.+. |... .....++|||++|+..
T Consensus 11 ~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~--~~~~~R~VGfvFQ~YAL 88 (345)
T COG1118 11 RFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN--LAVRDRKVGFVFQHYAL 88 (345)
T ss_pred hcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc--cchhhcceeEEEechhh
Confidence 455666666666666779999999999999999999999999999 99999887 4443 2334578999999863
Q ss_pred -------HHHHhcCCCc-cc--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 -------RAVETGGCPH-AA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 -------~~~~~~~~~~-~~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
.++.+|.... +. ..+....+.+.|..+.+....++.+.. ||||+||+++||||+ +|+|+||| |...+
T Consensus 89 F~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL 168 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168 (345)
T ss_pred cccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence 3444443221 11 112223344455555555555565655 999999999999999 99999999 66666
Q ss_pred Ccc
Q 023913 206 KIP 208 (275)
Q Consensus 206 d~~ 208 (275)
|..
T Consensus 169 Da~ 171 (345)
T COG1118 169 DAK 171 (345)
T ss_pred hHH
Confidence 653
No 50
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=2.3e-23 Score=179.92 Aligned_cols=150 Identities=19% Similarity=0.063 Sum_probs=104.6
Q ss_pred ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccc
Q 023913 57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGA 132 (275)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~ 132 (275)
..+.|++ ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|
T Consensus 6 l~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 82 (214)
T cd03292 6 VTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV 82 (214)
T ss_pred EEEEeCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence 3455544 334555666666889999999999999999999999999998 999998887755432 235567999
Q ss_pred cCchhHHH--------HHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 133 LPEERIRA--------VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 133 v~q~~~~~--------~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
++|++..+ +.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 83 v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 162 (214)
T cd03292 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162 (214)
T ss_pred EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99986311 1111000 001111112334456666555445556666 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 163 Pt~~LD~~~ 171 (214)
T cd03292 163 PTGNLDPDT 171 (214)
T ss_pred CCCcCCHHH
Confidence 898988654
No 51
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=1.8e-23 Score=181.56 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=100.3
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HH-HhccccCchhH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI----- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~-~~ig~v~q~~~----- 138 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....... ++ +.++|++|++.
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 3455555566889999999999999999999999999998 99999888776544332 23 56999999852
Q ss_pred ---HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ---~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 111111000 001111122334566666555555666666 999999999999999 99999999 888998654
No 52
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.2e-23 Score=184.32 Aligned_cols=153 Identities=12% Similarity=-0.022 Sum_probs=110.3
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++. +...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++
T Consensus 9 ~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 87 (279)
T PRK13650 9 NLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVF 87 (279)
T ss_pred eEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEE
Confidence 445555430 0123555666667889999999999999999999999999998 99999998886555556777899999
Q ss_pred chhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 135 EERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 135 q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
|++. +++.++.... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 88 QNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred cChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9862 1111111000 11111123345567777666666777777 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 168 t~~LD~~~ 175 (279)
T PRK13650 168 TSMLDPEG 175 (279)
T ss_pred cccCCHHH
Confidence 99998653
No 53
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=8.2e-23 Score=176.33 Aligned_cols=139 Identities=23% Similarity=0.173 Sum_probs=111.7
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--- 139 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--- 139 (275)
+|++..++.+.++..++|++++++|+|||||||++++|+|++.|+ |+|.+.+.++.. ....+|||+|+++-.
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLYPK 86 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccCcc
Confidence 788999999999999999999999999999999999999999998 999999988753 445689999998621
Q ss_pred -----HHH----hcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 140 -----AVE----TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 140 -----~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
.+. +-|.+.. +........|+++.........+.+ |.|++|++.+..+++ .|.++||| |.+|+|+
T Consensus 87 ~tv~dql~yla~LkGm~~~---e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP 163 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKA---EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP 163 (300)
T ss_pred CcHHHHHHHHHHhcCCcHH---HHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh
Confidence 111 2233222 2223344577777776666677777 999999999999999 89999999 9999998
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 164 VN 165 (300)
T COG4152 164 VN 165 (300)
T ss_pred hh
Confidence 65
No 54
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.89 E-value=4.8e-23 Score=187.53 Aligned_cols=143 Identities=19% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------
Q 023913 66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------ 138 (275)
++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.+||+||++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCc
Confidence 3445666666667889999999999999999999999999998 9999988876532 3455678999999852
Q ss_pred --HHHHh-cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+ .........+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++||| |++++|...
T Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 170 (303)
T TIGR01288 94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170 (303)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 11111 1000011111112233456666555556666777 999999999999999 89999999 999998754
No 55
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=2.7e-23 Score=180.32 Aligned_cols=141 Identities=17% Similarity=-0.015 Sum_probs=101.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (275)
+.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++..
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHH
Confidence 44555666666889999999999999999999999999998 9999988776542 34556779999997521
Q ss_pred -HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 -AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 -~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 168 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHH
Confidence 11111000 001111112334456666555455666666 999999999999999 99999999 899998754
No 56
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=2.6e-23 Score=178.56 Aligned_cols=141 Identities=16% Similarity=0.066 Sum_probs=100.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHHHHhccccCchhHHH--
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRA-- 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~-- 140 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++..+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 45555666666889999999999999999999999999998 999998887543221 13456799999986321
Q ss_pred ------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 141 ------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 141 ------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK 168 (206)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence 11110000 00111123344566666655556667777 999999999999999 99999999 88888754
No 57
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.8e-23 Score=182.01 Aligned_cols=156 Identities=14% Similarity=0.010 Sum_probs=107.0
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HH-Hh
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MR 129 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~-~~ 129 (275)
.++.+.|++.-....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... ++ +.
T Consensus 9 ~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 88 (233)
T PRK11629 9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88 (233)
T ss_pred EeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhcc
Confidence 344555654100123455555566789999999999999999999999999998 99999988876554332 22 46
Q ss_pred ccccCchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 130 NGALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 130 ig~v~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
++|++|++. +++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+|+|
T Consensus 89 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 168 (233)
T PRK11629 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168 (233)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999852 122111100 001111123344566777665555666666 999999999999999 999999
Q ss_pred Ee-CCCCCCcccc
Q 023913 199 ID-VSGGDKIPRK 210 (275)
Q Consensus 199 lD-~t~g~d~~~~ 210 (275)
+| |++++|....
T Consensus 169 LDEPt~~LD~~~~ 181 (233)
T PRK11629 169 ADEPTGNLDARNA 181 (233)
T ss_pred EeCCCCCCCHHHH
Confidence 99 9999997653
No 58
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.7e-23 Score=183.31 Aligned_cols=151 Identities=17% Similarity=0.016 Sum_probs=108.5
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhcccc
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGAL 133 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v 133 (275)
+..+.|++ +..++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+.+.++.... ...+++.+||+
T Consensus 6 ~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (274)
T PRK13644 6 NVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIV 82 (274)
T ss_pred EEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEE
Confidence 34455543 344566666667889999999999999999999999999998 99999988776543 24566789999
Q ss_pred CchhHH---------HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 134 PEERIR---------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 134 ~q~~~~---------~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+|++.. ++.+.... ..........+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+|+|+|
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 998531 11111100 011111123344566666665556666777 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 163 Pt~gLD~~~ 171 (274)
T PRK13644 163 VTSMLDPDS 171 (274)
T ss_pred CcccCCHHH
Confidence 999998654
No 59
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=1.2e-22 Score=200.15 Aligned_cols=150 Identities=18% Similarity=0.120 Sum_probs=112.0
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +.+++.+.++..++|++++|+|++|||||||+++|+|++ |+ |+|.+++.++.+.+...+++.++|+
T Consensus 353 ~~vsf~~~~---~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 353 EDLEILSPD---GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EeeEEeccC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 556655544 445555666666889999999999999999999999999 77 9999999999988889999999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
+|++. +|+.+ +++..+..+-... ....+.++. ...+++..+.| ||||+||++||||++ +|+|+
T Consensus 429 ~Q~~~LF~~TI~eNI~~-g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 429 GQNPQLPHGTLRDNVLL-GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred cCCCcCCCcCHHHHhhc-CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99973 33333 4444433221111 111233332 23467777777 999999999999999 99999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
||| ||+.+|...
T Consensus 508 iLDE~TSaLD~~t 520 (588)
T PRK11174 508 LLDEPTASLDAHS 520 (588)
T ss_pred EEeCCccCCCHHH
Confidence 999 888888643
No 60
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=8.6e-23 Score=178.96 Aligned_cols=143 Identities=22% Similarity=0.114 Sum_probs=103.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~------- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+ ++.++|+||++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 34555666666789999999999999999999999999998 999999887765544443 346999999852
Q ss_pred -HHHHhcCCCc-c----------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 -RAVETGGCPH-A----------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 -~~~~~~~~~~-~----------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... . ........+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 172 (236)
T cd03219 93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172 (236)
T ss_pred HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1221111000 0 0111123345567777665556666777 999999999999999 99999999 999
Q ss_pred CCCcccc
Q 023913 204 GDKIPRK 210 (275)
Q Consensus 204 g~d~~~~ 210 (275)
++|...+
T Consensus 173 ~LD~~~~ 179 (236)
T cd03219 173 GLNPEET 179 (236)
T ss_pred cCCHHHH
Confidence 9997543
No 61
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.1e-22 Score=183.77 Aligned_cols=154 Identities=17% Similarity=0.054 Sum_probs=108.2
Q ss_pred cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--hHHHHHhcc
Q 023913 56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNG 131 (275)
Q Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--~~~~~~~ig 131 (275)
++.+.|++.-+ .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.+|
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig 86 (287)
T PRK13637 7 NLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86 (287)
T ss_pred EEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceE
Confidence 34555653111 134566666667889999999999999999999999999998 99999998876532 235667899
Q ss_pred ccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc--ccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913 132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 132 ~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~--~~~d~~~~e-S~G~~q~~~laral~-~~~vl 197 (275)
|+||++. +++.++... .....+....+.+.++.++.. ...+..+.+ |+||+||++|||+|+ +|+++
T Consensus 87 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~ll 166 (287)
T PRK13637 87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKIL 166 (287)
T ss_pred EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999852 111111000 011111223345567776664 345666667 999999999999999 99999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
|+| |++++|...
T Consensus 167 llDEPt~gLD~~~ 179 (287)
T PRK13637 167 ILDEPTAGLDPKG 179 (287)
T ss_pred EEECCccCCCHHH
Confidence 999 999998653
No 62
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.88 E-value=1.1e-22 Score=176.62 Aligned_cols=141 Identities=19% Similarity=0.101 Sum_probs=99.0
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~------- 138 (275)
..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++........ ++.++|+||++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 44555666666889999999999999999999999999998 999999887765544443 456999999862
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHh-hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+....... ..........++.+ ......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 93 ~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 167 (222)
T cd03224 93 EENLLLGAYARRR-AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 167 (222)
T ss_pred HHHHHHHhhhcCc-hhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHH
Confidence 111111110000 01111222334444 223345566666 999999999999999 89999999 999998754
No 63
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.88 E-value=1.6e-22 Score=198.52 Aligned_cols=152 Identities=21% Similarity=0.169 Sum_probs=118.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +.+++.+.++..++|+.++|+||+|||||||++.|+++++|+ |+|.+++.|+.+.+...+++.++++
T Consensus 332 ~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 332 ENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 777888887 566666777778889999999999999999999999999997 9999999999999999999999999
Q ss_pred CchhH------HHHHhcCCCccchHHHHHHHHH-HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913 134 PEERI------RAVETGGCPHAAIREDISINLG-PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 134 ~q~~~------~~~~~~~~~~~~~~~~~~~~~~-~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll 198 (275)
||++. ..+..-+++.++..+-...... .+.++.. ..+++..+.| |+|||||++|||+++ +|+|+|
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99973 3333445555443222211111 1233222 3368888886 999999999999999 999999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
|| ||+.+|...
T Consensus 489 LDEaTSalD~~t 500 (567)
T COG1132 489 LDEATSALDTET 500 (567)
T ss_pred EeccccccCHHh
Confidence 99 888887643
No 64
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.88 E-value=1.2e-22 Score=175.31 Aligned_cols=142 Identities=18% Similarity=0.099 Sum_probs=100.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC--CChHHHHHhccccCchhHH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR----- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~----- 139 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.++|++|++..
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 44555666666789999999999999999999999999998 999998877642 1233456789999998631
Q ss_pred ---HHHhcCC--CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 ---AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ---~~~~~~~--~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+... ......+....+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1111100 0001111122334456666555445666666 999999999999999 89999999 888988653
No 65
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.8e-23 Score=179.15 Aligned_cols=140 Identities=21% Similarity=0.138 Sum_probs=99.6
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (275)
+.++.+.++...+| +++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++..
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHH
Confidence 34555555556678 99999999999999999999999998 99999887765433 4566789999998621
Q ss_pred -HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 -AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 -~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 165 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11110000 000011112234456666555445666666 999999999999999 99999999 899998654
No 66
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=3.2e-23 Score=179.11 Aligned_cols=145 Identities=19% Similarity=0.094 Sum_probs=116.8
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hccccCchh----
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEER---- 137 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~---- 137 (275)
+|+.-.++.++++...+|++++|+||||||||||+|+|+|.++|+ |+|.+.+.++....+.++.+ .++-.||..
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 788888999999999999999999999999999999999999999 99999999998887766554 356667765
Q ss_pred ----HHHHHhcCCCc----------c---chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 138 ----IRAVETGGCPH----------A---AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 138 ----~~~~~~~~~~~----------~---~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
.+++..+.... . ...+....+.+.|+.+++....+....+ |.|+++++.|||||+ +|++++
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL 172 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL 172 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE
Confidence 24444331111 0 1123335567788888888888888888 999999999999999 999999
Q ss_pred Ee-CCCCCCcc
Q 023913 199 ID-VSGGDKIP 208 (275)
Q Consensus 199 lD-~t~g~d~~ 208 (275)
|| |.+|+...
T Consensus 173 LDEPaAGln~~ 183 (250)
T COG0411 173 LDEPAAGLNPE 183 (250)
T ss_pred ecCccCCCCHH
Confidence 99 88887643
No 67
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=1.1e-22 Score=175.83 Aligned_cols=137 Identities=23% Similarity=0.180 Sum_probs=98.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++. .+++.++|++|++..
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCc
Confidence 44555666666789999999999999999999999999998 99998876542 355679999997521
Q ss_pred ---HHHhcCCCcc-----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 140 ---AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 140 ---~~~~~~~~~~-----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
++.+...... ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 166 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1111111100 0011122344456666555445666666 999999999999999 99999999 89999875
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 167 ~ 167 (213)
T cd03235 167 T 167 (213)
T ss_pred H
Confidence 4
No 68
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.9e-23 Score=180.25 Aligned_cols=142 Identities=19% Similarity=0.070 Sum_probs=102.5
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR----- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~----- 139 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... ..++.++|+||++..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 4555655666789999999999999999999999999998 9999998887654332 235679999998521
Q ss_pred ---HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 140 ---AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 140 ---~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
++.+..... .........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence 111110000 01111122344566666665555666666 999999999999999 99999999 8999997543
No 69
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-22 Score=181.88 Aligned_cols=152 Identities=16% Similarity=-0.007 Sum_probs=109.3
Q ss_pred ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.+.|++ . ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus 9 ~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 9 EHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 344555543 2 23555655666789999999999999999999999999998 999999988866555566678999
Q ss_pred cCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 133 LPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 133 v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
++|++. +++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|.++|+|
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 165 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD 165 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999862 1111110000 11111123345566666666556666777 999999999999999 99999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 166 EPt~gLD~~~ 175 (279)
T PRK13635 166 EATSMLDPRG 175 (279)
T ss_pred CCcccCCHHH
Confidence 999998653
No 70
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.8e-23 Score=185.11 Aligned_cols=146 Identities=16% Similarity=0.017 Sum_probs=104.4
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~ 138 (275)
+|++..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+ .+.++|++|++.
T Consensus 33 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred hcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 344556666666777889999999999999999999999999998 999998877655433222 246999999852
Q ss_pred H--------HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 R--------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 ~--------~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
. ++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD 192 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1 111110000 00111122344566666655555666677 999999999999999 99999999 999999
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 193 ~~~ 195 (269)
T cd03294 193 PLI 195 (269)
T ss_pred HHH
Confidence 764
No 71
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.88 E-value=4.7e-23 Score=178.51 Aligned_cols=140 Identities=18% Similarity=0.051 Sum_probs=101.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++. +
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHH
Confidence 3455555556789999999999999999999999999998 999998887753 34456678999999852 1
Q ss_pred HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 171 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence 111110000 01111123344566766655555666666 999999999999999 99999999 899998654
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.88 E-value=2.9e-23 Score=178.70 Aligned_cols=139 Identities=17% Similarity=0.022 Sum_probs=100.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ..+++.++|++|++.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcH
Confidence 345566666666889999999999999999999999999998 9999988766432 345667999999852
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+....... ....+.+.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...+
T Consensus 90 ~e~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 162 (208)
T cd03268 90 RENLRLLARLLGI---RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGI 162 (208)
T ss_pred HHHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence 111111100000 112233455666555445666666 999999999999999 89999999 8999987543
No 73
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-22 Score=181.81 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=108.1
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++ ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++
T Consensus 8 ~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 84 (277)
T PRK13652 8 DLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVF 84 (277)
T ss_pred EEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEe
Confidence 44455543 344566666667889999999999999999999999999998 99999988776544456677899999
Q ss_pred chhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 135 EERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 135 q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
|++. +++.+.... ..........+.+.++.+......++.+.+ |+||+||+.|||+|+ +|+++|+| |
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9852 111111000 011111112334566666665556666777 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 165 t~gLD~~~ 172 (277)
T PRK13652 165 TAGLDPQG 172 (277)
T ss_pred cccCCHHH
Confidence 99998643
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=6.5e-23 Score=178.79 Aligned_cols=142 Identities=17% Similarity=0.087 Sum_probs=100.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc-----CCC-CcEEEEeccCCCCC--hHHHHHhccccCchhHH
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIR 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l-----~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~ 139 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|++ +|+ |+|.+.+.++.... ...+++.++|++|++..
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 44555666666889999999999999999999999999 887 99999888765443 34456779999998632
Q ss_pred H-------HHhcCCCcc-chHH-HHHHHHHHHHHhhcccccccc--ccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 140 A-------VETGGCPHA-AIRE-DISINLGPLEELSNLFKADLL--LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 140 ~-------~~~~~~~~~-~~~~-~~~~~~~~L~~l~~~~~~d~~--~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+ +.+...... .... ....+.+.++.+......+.. +.+ |+||+||++|||+|+ +|+++|+| |++++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred ccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 1 111100000 0001 122334456666554433444 355 999999999999999 89999999 89999
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|...
T Consensus 173 D~~~ 176 (227)
T cd03260 173 DPIS 176 (227)
T ss_pred CHHH
Confidence 8754
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=187.58 Aligned_cols=141 Identities=17% Similarity=0.069 Sum_probs=103.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhccccCchhH------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~ig~v~q~~~------ 138 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+ +++.+||+||++.
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 4555666667889999999999999999999999999998 99999998876554332 3567999999852
Q ss_pred --HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+... ......+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~ 175 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 12221110 0011111123344566766665556666677 999999999999999 89999999 899998654
No 76
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.8e-23 Score=189.18 Aligned_cols=141 Identities=14% Similarity=0.020 Sum_probs=105.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ ..+++||++|+..
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCH
Confidence 445566666667889999999999999999999999999998 999999988765433 3468999999863
Q ss_pred -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~ 171 (351)
T PRK11432 96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANL 171 (351)
T ss_pred HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 2222221111 11111223445566666666666777777 999999999999999 99999999 899988654
No 77
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.1e-23 Score=181.28 Aligned_cols=142 Identities=17% Similarity=0.050 Sum_probs=102.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 34555666666889999999999999999999999999998 999998887765444455667999999852
Q ss_pred HHHHhcCCC-ccchHHHHHHHHHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCP-HAAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.... ..........+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 170 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 111111000 0111111233445666665543 34555666 999999999999999 89999999 999999764
No 78
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=188.08 Aligned_cols=141 Identities=18% Similarity=0.094 Sum_probs=106.0
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ ..+.+||++|++.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcH
Confidence 344555666667889999999999999999999999999998 999999988765432 3467999999852
Q ss_pred -HHHHhcCCC-----ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~-----~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++... .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~ 171 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 233332211 111122223455677777666667777777 999999999999999 99999999 899998654
No 79
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=4.2e-23 Score=178.25 Aligned_cols=140 Identities=13% Similarity=-0.037 Sum_probs=100.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+.++|++|++..
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEecChhhccCCCHH
Confidence 44556666666889999999999999999999999999998 999998887754322 13579999998631
Q ss_pred -HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 -AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 -~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+..... ....+....+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 165 (213)
T cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165 (213)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 111110000 01111122334456666555555666666 999999999999999 89999999 899998754
No 80
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=182.04 Aligned_cols=152 Identities=14% Similarity=-0.014 Sum_probs=109.5
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC--CChHHHHHhcc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNG 131 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~--~~~~~~~~~ig 131 (275)
.++.+.|++ +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.+|
T Consensus 9 ~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig 85 (283)
T PRK13636 9 EELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG 85 (283)
T ss_pred EeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence 344555543 345666666667889999999999999999999999999998 999999988742 22345667899
Q ss_pred ccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 132 ~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
|+||++. +++.++... .....+....+...++.+......+..+.+ |+||+||++|||+|+ +|+++|+
T Consensus 86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLil 165 (283)
T PRK13636 86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165 (283)
T ss_pred EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999862 111111000 011112223345566777666666777777 999999999999999 9999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| |++++|...
T Consensus 166 DEPt~gLD~~~ 176 (283)
T PRK13636 166 DEPTAGLDPMG 176 (283)
T ss_pred eCCccCCCHHH
Confidence 9 999998654
No 81
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=7.7e-23 Score=189.77 Aligned_cols=142 Identities=15% Similarity=0.038 Sum_probs=105.9
Q ss_pred CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------
Q 023913 66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------ 138 (275)
++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ ..+.+||+||+..
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCc
Confidence 3344555666666789999999999999999999999999998 999999988765443 3567999999863
Q ss_pred --HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~ 169 (353)
T TIGR03265 93 VADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARV 169 (353)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2222221110 01111223455677777776667777777 999999999999999 99999999 888988654
No 82
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=1.4e-22 Score=177.07 Aligned_cols=143 Identities=19% Similarity=0.114 Sum_probs=101.6
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+ ++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 44555666666889999999999999999999999999998 999998877655443333 346999999852
Q ss_pred -HHHHhcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 -RAVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 -~~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+....... .......+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 111111100101 111112334456666555555666666 999999999999999 99999999 9999997653
No 83
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-22 Score=180.63 Aligned_cols=153 Identities=16% Similarity=0.032 Sum_probs=107.5
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+.|++ +...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus 11 ~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 11 ENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 344555542 1234455555556789999999999999999999999999998 9999998887654445667789999
Q ss_pred CchhH-HH--------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 134 PEERI-RA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 134 ~q~~~-~~--------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+|++. .+ +.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99862 11 11110000 01111112344566666655556666667 999999999999999 89999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 169 P~~gLD~~~ 177 (271)
T PRK13632 169 STSMLDPKG 177 (271)
T ss_pred CcccCCHHH
Confidence 999998754
No 84
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4e-23 Score=184.49 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=108.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++ +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus 15 ~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 15 RNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred eeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 444455543 45566666667889999999999999999999999999998 9999988877655555666789999
Q ss_pred CchhH--------HHHHhcCCCcc----ch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 134 PEERI--------RAVETGGCPHA----AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~~~~----~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
+|++. +++.+..+... .. ......+...++.+......+..+.+ |+||+||++|||+|+ +|+|+|
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99742 22222211100 00 11122334456666555555666667 999999999999999 999999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++++|...
T Consensus 171 LDEPt~~LD~~~ 182 (265)
T PRK10575 171 LDEPTSALDIAH 182 (265)
T ss_pred EcCCcccCCHHH
Confidence 99 999998754
No 85
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.88 E-value=7.1e-23 Score=178.69 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=100.2
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---H-HHhccccCchhH------
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI------ 138 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~------ 138 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... . .+.++|++|++.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t 104 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence 455555566789999999999999999999999999998 99999888776544332 2 246999998852
Q ss_pred --HHHHhcC-CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~-~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.. ............+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...
T Consensus 105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~ 181 (228)
T PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181 (228)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 1111111 00011111223345566666655555666666 999999999999999 99999999 899998654
No 86
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.3e-22 Score=178.48 Aligned_cols=141 Identities=18% Similarity=0.061 Sum_probs=100.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHH
Confidence 44555666667889999999999999999999999999998 999998877654322 2357999999852
Q ss_pred HHHHhcCCCc-c----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 RAVETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 ~~~~~~~~~~-~----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+..... . ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1121111000 0 1111112334456666555445666666 999999999999999 89999999 9999997543
No 87
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.6e-22 Score=178.75 Aligned_cols=152 Identities=15% Similarity=0.038 Sum_probs=107.8
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.+..+.|++ .. .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus 11 ~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 11 KNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 344455554 32 3455555666789999999999999999999999999998 999999888765555566778999
Q ss_pred cCchhHH---------HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 133 LPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 133 v~q~~~~---------~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
++|++.. ++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+|
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9998631 111111000 11111122334456666655555666666 999999999999999 99999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 168 EPt~~LD~~~ 177 (269)
T PRK13648 168 EATSMLDPDA 177 (269)
T ss_pred CCcccCCHHH
Confidence 999998653
No 88
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.4e-23 Score=179.14 Aligned_cols=137 Identities=17% Similarity=0.044 Sum_probs=98.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ..+.++|++|++..
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHH
Confidence 3455555666789999999999999999999999999998 999998876642 24579999997521
Q ss_pred HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
++.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 11111000 000111123344566666655555666666 999999999999999 89999999 9999987543
No 89
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.1e-22 Score=174.38 Aligned_cols=144 Identities=17% Similarity=0.057 Sum_probs=101.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCChHHHHHhccccCchhH--
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-- 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.......+++.++|++|++.
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 34455566666688999999999999999999999999873 5 999999988765555566678999999862
Q ss_pred ------HHHHhcCCCcc---chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 ------RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ------~~~~~~~~~~~---~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.++..... ...+....+.+.++.+... ...+..+.+ |+||+||+++||+|+ +|+++|+| |+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 12211110000 0111112334455555432 234566666 999999999999999 89999999 99
Q ss_pred CCCCcccc
Q 023913 203 GGDKIPRK 210 (275)
Q Consensus 203 ~g~d~~~~ 210 (275)
+++|...+
T Consensus 175 ~~LD~~~~ 182 (250)
T PRK14247 175 ANLDPENT 182 (250)
T ss_pred ccCCHHHH
Confidence 99987643
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=2.2e-22 Score=176.67 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=101.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------- 139 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..++.++|++|++..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHH
Confidence 44555666666889999999999999999999999999998 999998877654433 334679999998521
Q ss_pred -HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 -AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 -~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 167 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 111111000 11111122334456666555555666666 999999999999999 89999999 999999754
No 91
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.6e-23 Score=191.84 Aligned_cols=141 Identities=15% Similarity=-0.011 Sum_probs=103.9
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ ..+.+||++|++.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEEEeCCcccCCCCCH
Confidence 344555666666789999999999999999999999999998 999998887754433 2467999999852
Q ss_pred -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~ 168 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2222221100 11111223445567777666666777777 999999999999999 99999999 899998654
No 92
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.6e-23 Score=183.14 Aligned_cols=142 Identities=21% Similarity=0.178 Sum_probs=103.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+||++.
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 44555666666889999999999999999999999999998 999998887765555566678999999852
Q ss_pred HHHHhcCCCcc----ch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPHA----AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~~----~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+...... .. ......+.+.++.+......+..+.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 22222211110 00 11122334456666555455666666 999999999999999 89999999 899998653
No 93
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.7e-23 Score=177.63 Aligned_cols=138 Identities=20% Similarity=0.059 Sum_probs=97.9
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ..++.++|++|++.
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHH
Confidence 44555556666889999999999999999999999999998 999988866531 34567999998852
Q ss_pred HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+... ...........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~ 163 (210)
T cd03269 89 DQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 (210)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 11111100 0001111122334456666554445555666 999999999999999 99999999 899998754
No 94
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.2e-22 Score=181.04 Aligned_cols=154 Identities=14% Similarity=0.016 Sum_probs=106.8
Q ss_pred cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHh
Q 023913 56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMR 129 (275)
Q Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~ 129 (275)
+..+.|++.-. ..+++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.
T Consensus 7 ~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 86 (290)
T PRK13634 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKK 86 (290)
T ss_pred EEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhh
Confidence 44555653100 134566666667889999999999999999999999999998 9999999877431 23355678
Q ss_pred ccccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 130 NGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 130 ig~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
+||+||++. +++.++... .....+....+.+.++.+.+. ...+..+.+ |+||+||++|||+|+ +|++
T Consensus 87 ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~l 166 (290)
T PRK13634 87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEV 166 (290)
T ss_pred EEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999852 111111110 011111223345566777664 334666666 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| |++++|...
T Consensus 167 lllDEPt~~LD~~~ 180 (290)
T PRK13634 167 LVLDEPTAGLDPKG 180 (290)
T ss_pred EEEECCcccCCHHH
Confidence 9999 899998654
No 95
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=5.9e-22 Score=201.97 Aligned_cols=167 Identities=19% Similarity=0.138 Sum_probs=125.5
Q ss_pred ccccccCCCCCCCCCCccc-cccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPIL-SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~-~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.||.+- +..+++ .++..++|++++|+|++||||||++++|.+++.|+ |+|.+++.|+...+...++.++|.
T Consensus 354 ~nV~FsYPsRp--dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl 431 (1228)
T KOG0055|consen 354 RNVCFSYPSRP--DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL 431 (1228)
T ss_pred EEEEecCCCCC--cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe
Confidence 88889999821 234444 44556779999999999999999999999999999 999999999999998899999999
Q ss_pred cCchhHHH------HHhcCCCccchHHHHHH-----HHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERIRA------VETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~~~------~~~~~~~~~~~~~~~~~-----~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
|.|+|..+ +...|.+..+..+..+. +.+.+.. +..+++..++| ||||+||++|||+|+ +|+
T Consensus 432 V~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ 509 (1228)
T KOG0055|consen 432 VSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPK 509 (1228)
T ss_pred eeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCC
Confidence 99998422 22334555543322211 1112222 24567777777 999999999999999 999
Q ss_pred EEEEe-CCCCCCccccc---------------------cccccccCEEEEec
Q 023913 196 IYIID-VSGGDKIPRKG---------------------GPGITQADLLVINK 225 (275)
Q Consensus 196 vlllD-~t~g~d~~~~~---------------------~~~i~~adiivlNK 225 (275)
|+||| ||+++|..... ...++.||.|++-+
T Consensus 510 ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 510 ILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVME 561 (1228)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEE
Confidence 99999 88888865432 13467899777555
No 96
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-22 Score=177.39 Aligned_cols=143 Identities=22% Similarity=0.210 Sum_probs=103.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 344555666666889999999999999999999999999998 999998877665555556677999999752
Q ss_pred -HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCCc
Q 023913 139 -RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKI 207 (275)
Q Consensus 139 -~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d~ 207 (275)
+++.+...... ........+.+.++.+......+..+.+ |+||+||++||++|+ +|.++|+| |++++|.
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 12222111111 1111122334466666555555666667 999999999999998 79999999 9999986
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 174 ~~ 175 (258)
T PRK13548 174 AH 175 (258)
T ss_pred HH
Confidence 54
No 97
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.9e-22 Score=178.72 Aligned_cols=143 Identities=11% Similarity=-0.014 Sum_probs=100.9
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC--CChHHHHHhccccCchhHH----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR---- 139 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~---- 139 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.++|++|++..
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 345555666666889999999999999999999999999998 999998887642 1223456679999998521
Q ss_pred -----HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 -----AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 -----~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~ 171 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 11111000 001111112234456665554445666666 999999999999999 99999999 999998654
No 98
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.87 E-value=3.6e-22 Score=200.05 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=113.5
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ +.+ ++.+.++..++|+.++|+|++|||||||+|+|+|+++|+ |+|.+++.++.+.+...+++.+||
T Consensus 455 ~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 455 DRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 788899976 444 444555556789999999999999999999999999998 999999999998888899999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +|+.+ +.+ .+.. ++..+.+ .+.++. ...+++..+.| ||||+||+++|||++ +|+
T Consensus 532 v~Q~~~lf~gTI~eNi~~-~~~-~~~e-~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 532 VLQNGRLMSGSIFENIAG-GAP-LTLD-EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred EccCCccCcccHHHHHhc-CCC-CCHH-HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999973 33333 333 3222 2221111 223221 23466777766 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+|+| ||+++|...
T Consensus 609 iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 609 ILLFDEATSALDNRT 623 (686)
T ss_pred EEEEeCCccCCCHHH
Confidence 99999 888888654
No 99
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=1.6e-22 Score=170.69 Aligned_cols=117 Identities=26% Similarity=0.275 Sum_probs=90.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~ 146 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q----------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ----------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------
Confidence 34555665666889999999999999999999999999998 999998888766555566667888876
Q ss_pred CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 81 --------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 81 --------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred --------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 12222222222333344 999999999999999 99999999 888988654
No 100
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.87 E-value=3.6e-22 Score=174.17 Aligned_cols=142 Identities=16% Similarity=0.085 Sum_probs=102.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence 445666666667889999999999999999999999999998 999998887765555556678999999853
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+....... ......+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 99 enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (225)
T PRK10247 99 DNLIFPWQIRNQ-QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN 172 (225)
T ss_pred HHHHhHHhhcCC-ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111111000000 01112233456666543 234556666 999999999999999 99999999 899998754
No 101
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.4e-22 Score=179.82 Aligned_cols=141 Identities=18% Similarity=0.067 Sum_probs=101.7
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHhccccCchhH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~ig~v~q~~~----- 138 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.+||+||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 4566666666889999999999999999999999999998 9999998877532 12356778999999852
Q ss_pred ----HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++... .....+....+.+.++.++.. ...+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 111111000 011111223344566666654 344555666 999999999999999 99999999 999998654
No 102
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.9e-23 Score=181.87 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=102.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+.+.++|++|++.
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 344555666666889999999999999999999999999998 999998877655445556677999999752
Q ss_pred -HHHHhcCCCc----cc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPH----AA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~----~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... .. .......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1222221100 00 011122334455555554445666666 999999999999999 89999999 999998654
No 103
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=6.8e-22 Score=201.55 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=132.1
Q ss_pred CCCC---ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH
Q 023913 51 LAPH---SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF 126 (275)
Q Consensus 51 ~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~ 126 (275)
..|. .++.|.||. .++.++..+-+....+|+.++|+||+||||||++.+|-.+|.|+ |.|.+++.|+...+...+
T Consensus 984 ~~G~I~~~~V~F~YPs-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPT-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred ceeEEEEeeeEeeCCC-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHH
Confidence 4455 889999996 33344444555556779999999999999999999999999999 999999999999999999
Q ss_pred HHhccccCchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHh--hccccccccccc-----ChhHHHHHHHHHHh
Q 023913 127 LMRNGALPEERI-------RAVETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSREL 191 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l--~~~~~~d~~~~e-----S~G~~q~~~laral 191 (275)
|+++|.|.|+|. +|+.+| ....+..+-.+. ....+..| .+..++|..++| ||||+||++||||+
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 999999999994 455555 222333222111 11122233 245689999998 99999999999999
Q ss_pred c-CceEEEEe-CCCCCCccccc---------------------cccccccCEEEEecCCCC
Q 023913 192 A-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLA 229 (275)
Q Consensus 192 ~-~~~vlllD-~t~g~d~~~~~---------------------~~~i~~adiivlNK~Dl~ 229 (275)
+ +|+|+||| +|+.+|..... ...++.||.|++-|--.+
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 9 99999999 78888865432 123577887776654443
No 104
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.87 E-value=2.9e-22 Score=201.41 Aligned_cols=150 Identities=12% Similarity=0.013 Sum_probs=113.2
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ ..+ ++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+..++++.+||
T Consensus 481 ~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 557 (710)
T TIGR03796 481 RNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAM 557 (710)
T ss_pred EEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence 788888886 444 445555556789999999999999999999999999998 999999999988888899999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +|+.+ +.+..+.. .+..+.+ .+.++. ...+++..+.| ||||+||++|||+++ +|+
T Consensus 558 v~Q~~~lf~gTi~eNi~l-~~~~~~~~-~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 558 VDQDIFLFEGTVRDNLTL-WDPTIPDA-DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred EecCChhhhccHHHHhhC-CCCCCCHH-HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 999973 23323 23333222 1211111 223322 23466777766 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+|+| ||+++|...
T Consensus 636 iliLDEptS~LD~~t 650 (710)
T TIGR03796 636 ILILDEATSALDPET 650 (710)
T ss_pred EEEEECccccCCHHH
Confidence 99999 888888643
No 105
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1.4e-22 Score=178.40 Aligned_cols=142 Identities=18% Similarity=0.040 Sum_probs=102.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~------- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++........ ++.++|++|++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 44555666667889999999999999999999999999998 999999887765444333 346999999852
Q ss_pred -HHHHhcCCCc----c----c-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 -RAVETGGCPH----A----A-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 -~~~~~~~~~~----~----~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+++.+..... . . .......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 2222211100 0 0 011223345566666665555666666 999999999999999 89999999 99999
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|...
T Consensus 175 D~~~ 178 (242)
T TIGR03411 175 TDEE 178 (242)
T ss_pred CHHH
Confidence 8754
No 106
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.7e-22 Score=180.37 Aligned_cols=141 Identities=17% Similarity=0.054 Sum_probs=101.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHhccccCchhH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~ig~v~q~~~----- 138 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.+||++|++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 4566666677889999999999999999999999999998 9999999877432 12345567999999852
Q ss_pred ----HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++... .....+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 111111000 011111223345566666654 345666777 999999999999999 99999999 999998654
No 107
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.87 E-value=1.1e-22 Score=174.05 Aligned_cols=139 Identities=16% Similarity=0.030 Sum_probs=98.9
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------ 139 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------ 139 (275)
.+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|+...
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcH
Confidence 345556666667889999999999999999999999999998 99999887765433 3455679999986421
Q ss_pred --HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 --AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+....... ....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 91 ~~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 162 (198)
T TIGR01189 91 LENLHFWAAIHGG---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162 (198)
T ss_pred HHHHHHHHHHcCC---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 11110000000 011233455655555445666666 999999999999999 99999999 888888643
No 108
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=2.6e-22 Score=187.47 Aligned_cols=143 Identities=14% Similarity=0.049 Sum_probs=105.4
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||+||+..
T Consensus 24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~l 101 (375)
T PRK09452 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHM 101 (375)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcccCCCC
Confidence 33445555666667889999999999999999999999999998 9999999887654432 467999999863
Q ss_pred ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 102 tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~ 179 (375)
T PRK09452 102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL 179 (375)
T ss_pred CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 2222221111 11111122344566666666667777777 999999999999999 99999999 899988653
No 109
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=2.5e-22 Score=179.81 Aligned_cols=143 Identities=20% Similarity=0.078 Sum_probs=102.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhH----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI---- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~---- 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 344555666667889999999999999999999999999998 9999988776544322 23557999999852
Q ss_pred ----HHHHhcCCCc--cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... .........+...++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 1221110000 11111112334456666665555666667 999999999999999 89999999 999998754
No 110
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.7e-22 Score=167.60 Aligned_cols=141 Identities=22% Similarity=0.156 Sum_probs=110.0
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh--------H
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER--------I 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~--------~ 138 (275)
++.+.+.++...+||+++|+||||||||||||.|+|.+.|+ |++.+.+.++.++.+.++.+.-+++||+. .
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~ 93 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH
Confidence 55555666666789999999999999999999999999998 99999999999999999999899999985 2
Q ss_pred HHHHhcCCCccch---HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCC
Q 023913 139 RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 ~~~~~~~~~~~~~---~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d 206 (275)
+.+.+|..+...- .++......+|..........+.+.+ |||++||+.+||.|+ ++.+++|| ||+.+|
T Consensus 94 eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 94 EVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred HHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence 5667887776432 13333344456555444444555555 999999999999997 24589999 888888
Q ss_pred cc
Q 023913 207 IP 208 (275)
Q Consensus 207 ~~ 208 (275)
+.
T Consensus 174 i~ 175 (259)
T COG4559 174 IA 175 (259)
T ss_pred hH
Confidence 64
No 111
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=175.72 Aligned_cols=140 Identities=18% Similarity=0.074 Sum_probs=101.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH-----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA----- 140 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~----- 140 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 344556666667889999999999999999999999999998 99999988876544455667899999986321
Q ss_pred --HHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 --VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 --~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+.+..... . .....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 95 e~l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 166 (241)
T PRK14250 95 DNIEYGPMLK-G--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166 (241)
T ss_pred HHHhcchhhc-C--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11110000 0 1112233455555553 234555556 999999999999999 99999999 899998754
No 112
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=3.5e-22 Score=175.66 Aligned_cols=142 Identities=18% Similarity=0.091 Sum_probs=102.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--hHHHHHhccccCchhH------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI------ 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~------ 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|++|++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 44555666666889999999999999999999999999998 99999988765422 2345567999999852
Q ss_pred --HHHHhcCCC--ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 111111100 011111223344566666655555666666 999999999999999 99999999 999998754
No 113
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=175.51 Aligned_cols=143 Identities=18% Similarity=0.088 Sum_probs=102.0
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhH-------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... .++.++|++|++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 44555666666889999999999999999999999999998 99999888775544333 3467999999862
Q ss_pred -HHHHhcCCCc--cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 139 -RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 139 -~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1221111000 01111122344456666554444555666 999999999999999 99999999 8999997543
No 114
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.87 E-value=3.8e-22 Score=200.52 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=114.8
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +..++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+..++++.+||+
T Consensus 477 ~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 553 (708)
T TIGR01193 477 NDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 (708)
T ss_pred EEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence 678888875 455555666667889999999999999999999999999998 9999999999888888999999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
||++. +|+.++..+..+..+ +..+.+ .+.++. ...+++..+.| |+||+||++||||++ +|+|
T Consensus 554 ~Q~~~lf~gTI~eNi~l~~~~~~~~~~-i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 554 PQEPYIFSGSILENLLLGAKENVSQDE-IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred ecCceehhHHHHHHHhccCCCCCCHHH-HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 99973 334343233333222 211111 222222 23456777766 999999999999999 8999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 633 liLDE~Ts~LD~~t 646 (708)
T TIGR01193 633 LILDESTSNLDTIT 646 (708)
T ss_pred EEEeCccccCCHHH
Confidence 9999 888988653
No 115
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.87 E-value=4.4e-22 Score=176.83 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=104.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 44555666666889999999999999999999999999998 999998887765555555667999999852
Q ss_pred HHHHhcCCCccc-----hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPHAA-----IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~~~-----~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+....... ..+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 222222111100 011222344566666555555666666 999999999999999 89999999 999998654
No 116
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.4e-22 Score=187.54 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=118.8
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
++..+.||+ +.+++.+.++..++|+.++|+|++|||||||++.|+|+++|+ |+|.+++.+..+.++..++++++|+
T Consensus 324 ~~l~~~y~~---g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 324 ENLSFRYPD---GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred cceEEecCC---CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 466777777 556677777778889999999999999999999999999998 9999999999999999999999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhhc-cccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~-~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll 198 (275)
+|++. +|+.+ +.+..+..+..+. ....+.++.. ..+.|..+.| |+||+||+++||||+ +++++|
T Consensus 401 ~Q~p~lf~gTireNi~l-~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 401 SQNPYLFAGTIRENILL-ARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred CCCCccccccHHHHhhc-cCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 99983 23333 2333332222211 1224555544 3578888888 999999999999999 899999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| ||+++|...
T Consensus 480 lDEpTA~LD~et 491 (559)
T COG4988 480 LDEPTAHLDAET 491 (559)
T ss_pred ecCCccCCCHhH
Confidence 99 899998654
No 117
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.1e-22 Score=178.39 Aligned_cols=151 Identities=17% Similarity=0.050 Sum_probs=108.0
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhccc
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGA 132 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig~ 132 (275)
++.+.|++ ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.++|
T Consensus 6 ~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 82 (275)
T PRK13639 6 DLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82 (275)
T ss_pred EEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEE
Confidence 34455543 344666666677889999999999999999999999999998 9999998876421 22345678999
Q ss_pred cCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 133 LPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 133 v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
++|++. +++.++... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 83 v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 162 (275)
T PRK13639 83 VFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162 (275)
T ss_pred EeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999852 111111000 011111123345567777666566777777 999999999999999 89999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 163 EPt~gLD~~~ 172 (275)
T PRK13639 163 EPTSGLDPMG 172 (275)
T ss_pred CCCcCCCHHH
Confidence 999998654
No 118
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.4e-22 Score=180.77 Aligned_cols=154 Identities=16% Similarity=0.034 Sum_probs=105.9
Q ss_pred cccccCCCCC-CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC-------------
Q 023913 56 HEPIYSPGYF-SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------------- 120 (275)
Q Consensus 56 ~~~~~~~~~~-~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~------------- 120 (275)
++.+.|++.- ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+...
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 86 (305)
T PRK13651 7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEK 86 (305)
T ss_pred EEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccc
Confidence 4456665410 0123555556666889999999999999999999999999998 999998655421
Q ss_pred -----------CChHHHHHhccccCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhcc-ccccccccc-
Q 023913 121 -----------KEDGEFLMRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE- 177 (275)
Q Consensus 121 -----------~~~~~~~~~ig~v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e- 177 (275)
.....+++.+||+||++. +++.++.... ....+....+.+.++.++.. ...++.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 166 (305)
T PRK13651 87 LVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL 166 (305)
T ss_pred cccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 012455678999999751 1122211111 11112223455677777664 445666666
Q ss_pred ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
|+||+||++||++|+ +|+++|+| |++++|...
T Consensus 167 SgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~ 200 (305)
T PRK13651 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 999999999999999 99999999 899998653
No 119
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.1e-22 Score=181.55 Aligned_cols=155 Identities=15% Similarity=0.000 Sum_probs=108.4
Q ss_pred ccccccCCCCC-CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-----------
Q 023913 55 SHEPIYSPGYF-SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------- 121 (275)
Q Consensus 55 ~~~~~~~~~~~-~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----------- 121 (275)
.++.+.|++.- ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...
T Consensus 25 ~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~ 104 (320)
T PRK13631 25 KNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPY 104 (320)
T ss_pred EeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccccccc
Confidence 56667675410 0124566666667889999999999999999999999999998 9999998776532
Q ss_pred -----ChHHHHHhccccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHH
Q 023913 122 -----EDGEFLMRNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLA 184 (275)
Q Consensus 122 -----~~~~~~~~ig~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~ 184 (275)
....+++.+||++|++. +++.++... .....+....+.+.++.+... ...+..+.+ |+||+||
T Consensus 105 ~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqR 184 (320)
T PRK13631 105 SKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRR 184 (320)
T ss_pred ccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHH
Confidence 12356678999999862 111121110 111122223445566666654 335555666 9999999
Q ss_pred HHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 185 ANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 185 ~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++|||+|+ +|.++|+| |++++|...
T Consensus 185 vaiAraL~~~p~iLLLDEPtsgLD~~~ 211 (320)
T PRK13631 185 VAIAGILAIQPEILIFDEPTAGLDPKG 211 (320)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 99999999 99999999 899998654
No 120
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=5.2e-22 Score=175.55 Aligned_cols=143 Identities=16% Similarity=0.059 Sum_probs=101.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--------hHHHHHhccccCchhH
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEFLMRNGALPEERI 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--------~~~~~~~ig~v~q~~~ 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 45566666666889999999999999999999999999998 99999887764321 1344567999999852
Q ss_pred --------HHHHhcCC--CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 --------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 --------~~~~~~~~--~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+++.++.. ...........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L 175 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 12211100 0011111112334456666555445666666 999999999999999 99999999 99999
Q ss_pred Ccccc
Q 023913 206 KIPRK 210 (275)
Q Consensus 206 d~~~~ 210 (275)
|...+
T Consensus 176 D~~~~ 180 (250)
T PRK11264 176 DPELV 180 (250)
T ss_pred CHHHH
Confidence 97543
No 121
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=1.6e-22 Score=173.57 Aligned_cols=136 Identities=14% Similarity=-0.005 Sum_probs=98.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+..+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++.
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHH
Confidence 44455556666789999999999999999999999999998 9999988776433 2355678999998752
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.. ... ....+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 92 e~l~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 160 (201)
T cd03231 92 ENLRFWH-ADH----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160 (201)
T ss_pred HHHHhhc-ccc----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 1111111 100 112233455666554445555666 999999999999999 99999999 888988643
No 122
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.2e-22 Score=174.69 Aligned_cols=140 Identities=17% Similarity=0.048 Sum_probs=100.3
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
.+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcH
Confidence 344566666667889999999999999999999999999998 99999887765432 345567899988642
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... .. .....+.+.++.+......+..+.+ |+||+||+++|++++ +|+++|+| |++++|...
T Consensus 92 ~e~l~~~~~~~-~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 164 (204)
T PRK13538 92 LENLRFYQRLH-GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164 (204)
T ss_pred HHHHHHHHHhc-Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 1111111000 00 1112334466666555445666666 999999999999999 99999999 888988654
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.87 E-value=4.9e-22 Score=173.10 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=98.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIR----- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~----- 139 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 4455555666789999999999999999999999999998 999998887755432 3456679999998621
Q ss_pred -----HHHhcCCCc-cchHH-HHHH-HHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 140 -----AVETGGCPH-AAIRE-DISI-NLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 140 -----~~~~~~~~~-~~~~~-~~~~-~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
++.+..... ..... .... ..+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 111110000 00111 1111 12455555442 234555666 999999999999999 89999999 8999887
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 179 ~~ 180 (228)
T cd03257 179 SV 180 (228)
T ss_pred HH
Confidence 54
No 124
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=8.6e-22 Score=193.77 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=112.0
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ ... .+.+.+...++|+.++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus 345 ~~vsf~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 345 RNVTFTYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEEecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 677888876 434 444555566789999999999999999999999999998 999999999988888889999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +|+.++ .+.....+.+..+.+ .+.++. ...+++..+.| ||||+||++|||+++ +|+
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~-~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYA-RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred EccCceeecchHHHHHhcC-CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 999973 333332 222111122221111 222221 23456776666 999999999999999 899
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+|+| ||+++|...
T Consensus 501 ililDEptsaLD~~t 515 (582)
T PRK11176 501 ILILDEATSALDTES 515 (582)
T ss_pred EEEEECccccCCHHH
Confidence 99999 888988654
No 125
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.9e-22 Score=177.59 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=100.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC------CChHHHHHhccccCchhHH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERIR- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~------~~~~~~~~~ig~v~q~~~~- 139 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.++|++|++..
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 45566666667889999999999999999999999999998 999998877521 1123456679999998631
Q ss_pred -------HHHhcCCC--ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 140 -------AVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 140 -------~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
++....+. .....+....+.+.++.++.....+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence 11111000 011111122344456666555455666666 999999999999999 99999999 8999987
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 175 ~~ 176 (242)
T PRK11124 175 EI 176 (242)
T ss_pred HH
Confidence 54
No 126
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=2.4e-22 Score=172.26 Aligned_cols=138 Identities=10% Similarity=-0.072 Sum_probs=99.0
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++.
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCH
Confidence 345555666666889999999999999999999999999998 999998877653 23455678999998742
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... . ....+.+.++.+......++.+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 92 ~~~~~~~~~~~-~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~ 162 (200)
T PRK13540 92 RENCLYDIHFS-P---GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162 (200)
T ss_pred HHHHHHHHhcC-c---chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 1111110000 0 111234455555544445566666 999999999999999 99999999 888888643
No 127
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.2e-22 Score=178.23 Aligned_cols=154 Identities=15% Similarity=0.036 Sum_probs=105.9
Q ss_pred cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC----CChHHHHHh
Q 023913 56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMR 129 (275)
Q Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~----~~~~~~~~~ 129 (275)
++.+.|++.-. ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. .....+++.
T Consensus 6 ~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 85 (288)
T PRK13643 6 KVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKK 85 (288)
T ss_pred EEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhh
Confidence 45566653100 123566666667889999999999999999999999999998 999999887642 123456778
Q ss_pred ccccCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 130 NGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 130 ig~v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
+||++|++. +++.++.... ....+....+.+.++.+... ...+..+.+ |+||+||++||++|+ +|+|
T Consensus 86 ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i 165 (288)
T PRK13643 86 VGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV 165 (288)
T ss_pred EEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 999999752 1111111000 01111122344566666553 234566666 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| |++++|...
T Consensus 166 llLDEPt~gLD~~~ 179 (288)
T PRK13643 166 LVLDEPTAGLDPKA 179 (288)
T ss_pred EEEECCccCCCHHH
Confidence 9999 899998643
No 128
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=4.4e-22 Score=165.08 Aligned_cols=132 Identities=18% Similarity=0.105 Sum_probs=105.2
Q ss_pred cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCC
Q 023913 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC 146 (275)
Q Consensus 76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~ 146 (275)
.....|++++|+||+|||||||||+|+|+..|. |.|.+.+.|.....+. .|-++++||+.. .++.+|..
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhccccchhhhhhhhhcccCC
Confidence 345679999999999999999999999999998 9999999998766553 345788999864 34445666
Q ss_pred CccchH-HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~~-~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
|...+. ++...+..++.+++.....++++.+ |||||||+++||+|+ +.+|++|| |.+.+|+..
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~L 164 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHH
Confidence 665543 3334556677788888888888888 999999999999999 78889999 777777543
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-22 Score=178.93 Aligned_cols=143 Identities=15% Similarity=0.046 Sum_probs=101.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~------ 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......... ..++|++|++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 344555666666789999999999999999999999999998 9999998877655443433 34788898752
Q ss_pred --HHHHhcCCC--------cc--------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 139 --RAVETGGCP--------HA--------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 139 --~~~~~~~~~--------~~--------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
+++.++... .. ...+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222221100 00 0011112334456666555555666667 999999999999999 899999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++++|...
T Consensus 177 lDEPt~~LD~~~ 188 (255)
T PRK11300 177 LDEPAAGLNPKE 188 (255)
T ss_pred EcCCccCCCHHH
Confidence 99 999999754
No 130
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.7e-22 Score=173.19 Aligned_cols=142 Identities=19% Similarity=0.090 Sum_probs=97.8
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~------ 138 (275)
.+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 344556666666889999999999999999999999999998 99999888776554433 4567999999752
Q ss_pred --HHHHhcCCCccchHHHHHHHHHHHHHh-hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++..... ..........+.+.++.+ ......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus 97 v~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~ 172 (237)
T PRK11614 97 VEENLAMGGF-FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172 (237)
T ss_pred HHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHH
Confidence 11111111 111111111122233333 122223344455 999999999999999 99999999 999999754
No 131
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.2e-22 Score=186.23 Aligned_cols=143 Identities=15% Similarity=0.041 Sum_probs=105.5
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ .++.+||+||++.
T Consensus 29 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~lfp~l 106 (377)
T PRK11607 29 FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHM 106 (377)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCccCCCC
Confidence 33444555666666789999999999999999999999999998 999999887754432 4568999999863
Q ss_pred ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~ 184 (377)
T PRK11607 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKL 184 (377)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2222221110 11111123345567777666666777777 999999999999999 99999999 899988654
No 132
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-21 Score=176.93 Aligned_cols=155 Identities=13% Similarity=-0.053 Sum_probs=108.2
Q ss_pred ccccccCCCCC--CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhc
Q 023913 55 SHEPIYSPGYF--SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRN 130 (275)
Q Consensus 55 ~~~~~~~~~~~--~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~i 130 (275)
.+..+.|++.- ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.+
T Consensus 8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i 87 (280)
T PRK13633 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKA 87 (280)
T ss_pred eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhhe
Confidence 34455665310 0133555555566789999999999999999999999999998 99999988775432 24566789
Q ss_pred cccCchhHHH---------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 131 GALPEERIRA---------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 131 g~v~q~~~~~---------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
||+||++... +.++.... ....+....+.+.++.++.....+..+.+ |+||+||++|||+|+ +|+++|
T Consensus 88 ~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 167 (280)
T PRK13633 88 GMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII 167 (280)
T ss_pred EEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999986211 11110000 01111123345566766666666777777 999999999999999 899999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++++|...
T Consensus 168 lDEPt~gLD~~~ 179 (280)
T PRK13633 168 FDEPTAMLDPSG 179 (280)
T ss_pred EeCCcccCCHHH
Confidence 99 999998654
No 133
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-22 Score=189.41 Aligned_cols=146 Identities=17% Similarity=0.043 Sum_probs=106.0
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~ 138 (275)
.|+...++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+ ++.+||++|++.
T Consensus 37 ~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred hcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 333444555666666889999999999999999999999999998 999999988765544332 246999999852
Q ss_pred --------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 --------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 2222211100 01111223345567777666666777777 999999999999999 99999999 899998
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 197 ~~~ 199 (400)
T PRK10070 197 PLI 199 (400)
T ss_pred HHH
Confidence 653
No 134
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.86 E-value=1.3e-22 Score=171.14 Aligned_cols=164 Identities=26% Similarity=0.364 Sum_probs=115.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
+++.|.|+.||||||||+.++.......++.++.||++... |.++.+..|... ....+||.||+.+.++..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v-----~~l~~gcicc~~~~~~~~--- 72 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPV-----VELNNGCICCTLRDDLVE--- 72 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EE-----EEECTTTESS-TTS-HHH---
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEE-----EEecCCCcccccHHHHHH---
Confidence 57899999999999999999983234489999999999764 666665443210 112579999997776654
Q ss_pred HHHHhhccc--ccccccccChhHHHHHHHH-------HHhc-CceEEEEeCCCCC---CccccccccccccCEEEEecCC
Q 023913 161 PLEELSNLF--KADLLLCESGGDNLAANFS-------RELA-DYIIYIIDVSGGD---KIPRKGGPGITQADLLVINKTD 227 (275)
Q Consensus 161 ~L~~l~~~~--~~d~~~~eS~G~~q~~~la-------ral~-~~~vlllD~t~g~---d~~~~~~~~i~~adiivlNK~D 227 (275)
.+..+.... .++++++|+.|...+..++ ..+. ++.|.++|+.++. +.+..+..|++.||+||+||+|
T Consensus 73 ~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D 152 (178)
T PF02492_consen 73 ALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKID 152 (178)
T ss_dssp HHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GG
T ss_pred HHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccc
Confidence 555555555 7999999988876665552 1122 7899999996653 3344567899999999999999
Q ss_pred CCccchhhHHHHHHHHHhcCCCCCEEE
Q 023913 228 LASAIGADLAVMERDALRMRDGGPFIF 254 (275)
Q Consensus 228 l~~~~~~~~~~~~~~i~~~~~~~~ii~ 254 (275)
+++.. ..++++++.++++||.++|+.
T Consensus 153 ~~~~~-~~i~~~~~~ir~lnp~a~Iv~ 178 (178)
T PF02492_consen 153 LVSDE-QKIERVREMIRELNPKAPIVQ 178 (178)
T ss_dssp GHHHH---HHHHHHHHHHH-TTSEEE-
T ss_pred cCChh-hHHHHHHHHHHHHCCCCEEeC
Confidence 99882 245899999999999999973
No 135
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.86 E-value=1.7e-21 Score=195.46 Aligned_cols=151 Identities=22% Similarity=0.205 Sum_probs=113.0
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ ..+ ++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus 467 ~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~ 543 (694)
T TIGR03375 467 RNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY 543 (694)
T ss_pred EEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence 788899986 444 444555556789999999999999999999999999998 999999999988888899999999
Q ss_pred cCchhH------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 133 LPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 133 v~q~~~------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
++|++. ..+...+.+..+..+ +..+.+ .+.++. ...+++..+.| |+||+||++|||+++ +|++
T Consensus 544 v~Q~~~lf~~TI~eNi~~~~~~~~~~~-i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i 622 (694)
T TIGR03375 544 VPQDPRLFYGTLRDNIALGAPYADDEE-ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI 622 (694)
T ss_pred ECCChhhhhhhHHHHHhCCCCCCCHHH-HHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999974 222222333333222 111111 222221 23456766666 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 623 liLDE~Ts~LD~~t 636 (694)
T TIGR03375 623 LLLDEPTSAMDNRS 636 (694)
T ss_pred EEEeCCCCCCCHHH
Confidence 9999 888888643
No 136
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.9e-22 Score=170.23 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=97.4
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhHH--------
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIR-------- 139 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~-------- 139 (275)
+.++...+ ++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|++|++..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 77777788 999999999999999999999999998 99999887664211 12345679999998521
Q ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+..... ........+.+.++.+......+..+.+ |+||+||+.||++|+ +|+++|+| |++++|...
T Consensus 95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 166 (214)
T cd03297 95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166 (214)
T ss_pred HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 111111000 1111122344566666555445666666 999999999999999 89999999 999998754
No 137
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.86 E-value=9.1e-22 Score=170.96 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=101.5
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHHH----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRA---- 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~---- 140 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... ..++.++|++|++..+
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 3455555556789999999999999999999999999998 9999988776543322 3456799999986321
Q ss_pred ----HHhcCCCc--cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 ----VETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 ----~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+.+..... ....+....+.+.++.+......+..+.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 11111100 11111223345566776665555666666 999999999999999 99999999 888888654
No 138
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=2e-22 Score=176.09 Aligned_cols=141 Identities=18% Similarity=0.031 Sum_probs=97.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhHHH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERIRA----- 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~~~----- 140 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... ..+.++|++|++..+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 44555666666889999999999999999999999999998 99999887776544433 345799999986311
Q ss_pred ---HHhcCCCccchHHHHHHHHHHHHHhh-ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 141 ---VETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 141 ---~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+.+......... .....+.++.+. .....+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus 93 ~~~l~~~~~~~~~~~--~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~ 167 (230)
T TIGR03410 93 EENLLTGLAALPRRS--RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII 167 (230)
T ss_pred HHHHHHHHHhcCcch--HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 111100000000 011122333332 22234555556 999999999999999 99999999 9999997653
No 139
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.86 E-value=9.9e-22 Score=191.34 Aligned_cols=149 Identities=22% Similarity=0.256 Sum_probs=110.3
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.||+ ..+ ++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+..++++.++|
T Consensus 324 ~~v~f~y~~---~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~ 400 (529)
T TIGR02857 324 SGLSVAYPG---RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW 400 (529)
T ss_pred EEEEEECCC---CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence 678888987 443 455555566789999999999999999999999999998 999999999988888889999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
++|++. +++.++ .+..+. +.+..+.+ .+.++.. ..++|..+.| ||||+||+++||+++ +|+
T Consensus 401 v~Q~~~lf~~ti~~Ni~~~-~~~~~~-~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 401 VPQHPFLFAGTIAENIRLA-RPDASD-AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EcCCCcccCcCHHHHHhcc-CCCCCH-HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 999973 233232 222222 12211111 2222211 2345666655 999999999999999 899
Q ss_pred EEEEe-CCCCCCcc
Q 023913 196 IYIID-VSGGDKIP 208 (275)
Q Consensus 196 vlllD-~t~g~d~~ 208 (275)
++|+| ||+++|..
T Consensus 479 ililDE~ts~lD~~ 492 (529)
T TIGR02857 479 LLLLDEPTAHLDAE 492 (529)
T ss_pred EEEEeCcccccCHH
Confidence 99999 88787753
No 140
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-21 Score=169.29 Aligned_cols=135 Identities=19% Similarity=0.119 Sum_probs=98.5
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHh
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~ 143 (275)
+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++. +++.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 555666789999999999999999999999999998 999998887754332 2467999999853 22222
Q ss_pred cCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
........ ......+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~ 163 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11111111 11122344566666655555666666 999999999999999 89999999 899988654
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.5e-21 Score=176.03 Aligned_cols=152 Identities=17% Similarity=0.077 Sum_probs=107.2
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCCChHHHHHhcc
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRNG 131 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~~~~~~~~~ig 131 (275)
+..+.|++. .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+|
T Consensus 10 ~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 10 HVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 344555430 134555666666889999999999999999999999999885 68999888876544455667899
Q ss_pred ccCchhHH---------HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 132 ALPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 132 ~v~q~~~~---------~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
|++|++.. ++.+..... ....+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99998621 111110000 11111123344566766665556666666 999999999999999 9999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| |++++|...
T Consensus 168 DEPt~gLD~~~ 178 (282)
T PRK13640 168 DESTSMLDPAG 178 (282)
T ss_pred ECCcccCCHHH
Confidence 9 899998654
No 142
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=176.61 Aligned_cols=154 Identities=15% Similarity=0.027 Sum_probs=103.9
Q ss_pred cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHh
Q 023913 56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMR 129 (275)
Q Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~ 129 (275)
++.+.|++... ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.
T Consensus 7 ~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ 86 (280)
T PRK13649 7 NVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKK 86 (280)
T ss_pred EEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhh
Confidence 44555654110 123555555566789999999999999999999999999998 9999988876542 12345677
Q ss_pred ccccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 130 NGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 130 ig~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
++|++|++. +++.+.... .....+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|++
T Consensus 87 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 166 (280)
T PRK13649 87 VGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI 166 (280)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999852 111111000 011111112233455555554 234566666 999999999999999 8999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| |++++|...
T Consensus 167 llLDEPt~~LD~~~ 180 (280)
T PRK13649 167 LVLDEPTAGLDPKG 180 (280)
T ss_pred EEEeCCcccCCHHH
Confidence 9999 999998654
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.86 E-value=1.3e-21 Score=174.99 Aligned_cols=141 Identities=13% Similarity=0.026 Sum_probs=99.3
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------- 139 (275)
.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+++.++|++|++..
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 3555666666789999999999999999999999999998 9999988777533333344579999998521
Q ss_pred --HHHhcCCC--ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 --AVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 --~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++...... .....+....+.+.++.+... ...+..+.+ |+||+||++||++|+ +|+|+||| |++++|...
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 11111000 011111122344566666552 334555556 999999999999999 99999999 899998754
No 144
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=1.5e-21 Score=191.99 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=112.4
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ +. .++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus 342 ~~v~f~y~~---~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 418 (574)
T PRK11160 342 NNVSFTYPD---QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418 (574)
T ss_pred EEEEEECCC---CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence 778888876 43 3555555566789999999999999999999999999998 999999999988888889999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc-cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~-~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
++|++. +|+.+ +++..+.. ....+.+ .+.++.. ..++|..+.| |+||+||++|||+++ +|++
T Consensus 419 v~Q~~~lf~~ti~~Ni~~-~~~~~~~~-~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 419 VSQRVHLFSATLRDNLLL-AAPNASDE-ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred EcccchhhcccHHHHhhc-CCCccCHH-HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999973 22222 23322221 1211111 2333322 3456676666 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 497 lilDE~ts~lD~~t 510 (574)
T PRK11160 497 LLLDEPTEGLDAET 510 (574)
T ss_pred EEEeCCcccCCHHH
Confidence 9999 888888654
No 145
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-22 Score=179.25 Aligned_cols=141 Identities=17% Similarity=0.066 Sum_probs=100.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+.|+ ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++ ..+++.++|+
T Consensus 16 ~~l~~~~~----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i~~v 86 (257)
T PRK11247 16 NAVSKRYG----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDTRLM 86 (257)
T ss_pred EEEEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCceEEE
Confidence 34444443 345555666667889999999999999999999999999998 9998755432 2345679999
Q ss_pred CchhHH--------HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 134 PEERIR--------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 134 ~q~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+|++.. ++.+... . .....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLK--G---QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred ecCccCCCCCcHHHHHHhccc--c---hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 998521 1111110 0 0112334466666655555666666 999999999999999 99999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 162 ~~LD~~~ 168 (257)
T PRK11247 162 GALDALT 168 (257)
T ss_pred CCCCHHH
Confidence 9998754
No 146
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=1.5e-21 Score=192.33 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=112.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.||+ +...+.+.+....+|++++|+|++|||||||+++|+|+++|+ |.|.+++.++.+.+...+++.++|+
T Consensus 338 ~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 338 DDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 677788876 444555666667889999999999999999999999999998 9999999999888888999999999
Q ss_pred CchhH------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 134 PEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 134 ~q~~~------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
||++. +.+...+++..+.. ....+.+ .++.+. ...+++..+.+ ||||+||++|||+|+ +|+|+
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~~~~~~d~-~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVGRPDATDE-EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred ecCcccccccHHHHHhcCCCCCCHH-HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99973 22222233333322 1211111 223222 12345665554 999999999999999 89999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
|+| ||+++|...
T Consensus 494 iLDEpts~LD~~t 506 (588)
T PRK13657 494 ILDEATSALDVET 506 (588)
T ss_pred EEeCCccCCCHHH
Confidence 999 888988643
No 147
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=1.3e-21 Score=193.06 Aligned_cols=149 Identities=15% Similarity=0.050 Sum_probs=111.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.||+ +..++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|+
T Consensus 344 ~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 344 DNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 677788876 444555555666789999999999999999999999999998 9999999999888888999999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
||++. +|+.++ . ..+. +....+.+ .+.++. ...+++..+.| ||||+||++|||+++ +|+|
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~-~-~~~d-~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 421 QQDPVVLADTFLANVTLG-R-DISE-EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred ccCCccccchHHHHHHhC-C-CCCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 99973 333333 2 2221 12211111 222221 23356666655 999999999999999 8999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 498 lllDEpts~LD~~t 511 (592)
T PRK10790 498 LILDEATANIDSGT 511 (592)
T ss_pred EEEeCCcccCCHHH
Confidence 9999 888888643
No 148
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=9.3e-22 Score=181.11 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=102.5
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhH------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------ 138 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 3555666667889999999999999999999999999998 9999999888665433 34567999999862
Q ss_pred ----HHHHhcCC---CccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 139 ----RAVETGGC---PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 139 ----~~~~~~~~---~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+++..... ......+....+.+.++.+.+. ...+..+.+ |+||+||++|||+|+ +|.++|+| |++++|.
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~ 194 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV 194 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 11111100 0111112223344566666653 245666677 999999999999999 99999999 8999986
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 195 ~~ 196 (331)
T PRK15079 195 SI 196 (331)
T ss_pred HH
Confidence 43
No 149
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-21 Score=175.70 Aligned_cols=153 Identities=13% Similarity=-0.059 Sum_probs=105.5
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++. ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++
T Consensus 9 ~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 87 (277)
T PRK13642 9 NLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVF 87 (277)
T ss_pred EEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEE
Confidence 445555530 0112455555566889999999999999999999999999998 99999988876544445667899999
Q ss_pred chhH-HHHHhcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 135 EERI-RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 135 q~~~-~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
|++. .+.......+ ....+....+...++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 88 QNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred ECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9862 1111111000 11111112334455555554445555666 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 168 t~~LD~~~ 175 (277)
T PRK13642 168 TSMLDPTG 175 (277)
T ss_pred cccCCHHH
Confidence 99998654
No 150
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=1.4e-21 Score=196.47 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=112.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+++|.||+. ++..++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...++++++|+
T Consensus 482 ~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 560 (711)
T TIGR00958 482 QDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560 (711)
T ss_pred EEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence 7888999861 0123455555566789999999999999999999999999998 9999999999888888899999999
Q ss_pred CchhH------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 134 PEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 134 ~q~~~------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
+|++. +.+...+++.++.. .+..+.+ .+.++. ...+++..+.| |+||+||++|||+++ +|+|+
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~~~~e-~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTDTPDE-EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred ecCccccccCHHHHHhcCCCCCCHH-HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99973 22223233433322 2211111 122221 13356666665 999999999999999 89999
Q ss_pred EEe-CCCCCCcc
Q 023913 198 IID-VSGGDKIP 208 (275)
Q Consensus 198 llD-~t~g~d~~ 208 (275)
|+| ||+++|..
T Consensus 640 ILDEpTSaLD~~ 651 (711)
T TIGR00958 640 ILDEATSALDAE 651 (711)
T ss_pred EEEccccccCHH
Confidence 999 88888864
No 151
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.86 E-value=6.5e-22 Score=184.03 Aligned_cols=141 Identities=16% Similarity=0.056 Sum_probs=104.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-C--CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
...++.+.++...+|++++|+|||||||||||++|+|+++| . |+|.+.+.++....+ ..+.+||++|++.
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHL 94 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCC
Confidence 34455566666678999999999999999999999999987 4 899998888754333 3467999999863
Q ss_pred ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~ 172 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 2222221110 11111223445567777776667777778 999999999999999 99999999 899988653
No 152
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=9e-22 Score=165.15 Aligned_cols=145 Identities=21% Similarity=0.165 Sum_probs=121.4
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
+|+...++.+.+...++|.+++|+|||||||||||.+++.+++.+ |.|.+.+.++..++..++.++++++-|+..
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 455566666666677889999999999999999999999999998 999999999999988899999999988763
Q ss_pred ----HHHHhcCCCccch---HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ----RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ----~~~~~~~~~~~~~---~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+.+.+|.+|+..- .++...+.++++.+.+....++.+.| ||||+||+.+|..++ +.+.++|| |.+.+|..
T Consensus 90 lTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmk 169 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169 (252)
T ss_pred eEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchH
Confidence 3445777776532 35555667788888788778888888 999999999999999 89999999 88888853
No 153
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=1.5e-21 Score=173.53 Aligned_cols=143 Identities=19% Similarity=0.118 Sum_probs=100.0
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc-----CCCCChHHH----HHhccccCch
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEE 136 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d-----~~~~~~~~~----~~~ig~v~q~ 136 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+ +.......+ ++.++|++|+
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 344555666667889999999999999999999999999998 999998877 554433332 3469999998
Q ss_pred hHH----------HHHhc--CCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 137 RIR----------AVETG--GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 137 ~~~----------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+.. ++... .............+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+|+|+|
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 621 11100 0000011111223344566665532 34566666 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 178 Pt~~LD~~~ 186 (258)
T PRK11701 178 PTGGLDVSV 186 (258)
T ss_pred CcccCCHHH
Confidence 999998754
No 154
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=9e-22 Score=183.89 Aligned_cols=146 Identities=18% Similarity=0.013 Sum_probs=106.9
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec----cCCCCChHHH---H-HhccccC
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALP 134 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~----d~~~~~~~~~---~-~~ig~v~ 134 (275)
+|+...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+. ++.......+ + +.++|+|
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 344566677777777889999999999999999999999999998 99999875 4433333332 2 4699999
Q ss_pred chhH--------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 135 EERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 135 q~~~--------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
|++. +++.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.|||+|+ +|+|+|+| |+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9863 2222221100 11111223445677777776667777777 999999999999999 99999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 193 s~LD~~~ 199 (382)
T TIGR03415 193 SALDPLI 199 (382)
T ss_pred ccCCHHH
Confidence 9988653
No 155
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=1.2e-21 Score=173.14 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=99.9
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| .|+|.+.+.++... ....+++.++|+||++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 4455566666788999999999999999999999999976 58999988776542 23345678999999852
Q ss_pred ------HHHHhcCCCc--cchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... ....+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 94 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 173 (247)
T TIGR00972 94 FPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173 (247)
T ss_pred CCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1111110000 01111122334456666554 344555666 999999999999999 99999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 174 ~LD~~~ 179 (247)
T TIGR00972 174 ALDPIA 179 (247)
T ss_pred cCCHHH
Confidence 998754
No 156
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.6e-21 Score=168.69 Aligned_cols=147 Identities=22% Similarity=0.118 Sum_probs=115.5
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchhH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI--- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~--- 138 (275)
+|.+++.+.+.+-..++|+-.+|+|+|||||||||++++|.+.|+ |.+.+.+..++...- .+++++||++...--
T Consensus 40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~ 119 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119 (257)
T ss_pred EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence 344577777777778889999999999999999999999999998 999999999987654 789999999875431
Q ss_pred ------HHHHhcC-C-----Cc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 ------RAVETGG-C-----PH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ------~~~~~~~-~-----~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+.+-+++ . .. .....+...+...++.++.....++.+.. |.||+||+.|||||+ +|.++||| |+
T Consensus 120 ~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 120 RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 1111111 1 11 12234455566678888888788888888 999999999999999 99999999 89
Q ss_pred CCCCcccc
Q 023913 203 GGDKIPRK 210 (275)
Q Consensus 203 ~g~d~~~~ 210 (275)
+|+|...+
T Consensus 200 ~GLDl~~r 207 (257)
T COG1119 200 QGLDLIAR 207 (257)
T ss_pred ccCChHHH
Confidence 99987654
No 157
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.5e-21 Score=168.98 Aligned_cols=139 Identities=19% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV------ 141 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~------ 141 (275)
.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+.
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 4555666667789999999999999999999999999998 999998877655445556677999999863211
Q ss_pred -HhcCCCccchHHHHHHHHH--HHHHhh------ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 -ETGGCPHAAIREDISINLG--PLEELS------NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~--~L~~l~------~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+. ..... ........+ .+..+. .....+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...
T Consensus 97 ~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~ 174 (229)
T cd03254 97 IRLG-RPNAT-DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174 (229)
T ss_pred Hhcc-CCCCC-HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 11111 111111110 111111 11112233445 999999999999999 99999999 899999754
No 158
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.7e-21 Score=182.38 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=119.5
Q ss_pred ccccccCCCCCCCCCCcc-ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.+++|.||| ....++ +.++...+||.++|+|++|||||||++.|+|.++|+ |+|.+.+.++...++.++++.+++
T Consensus 340 ~~vsF~y~~---~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~v 416 (573)
T COG4987 340 RNVSFTYPG---QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV 416 (573)
T ss_pred ccceeecCC---CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhh
Confidence 788899999 664444 555556779999999999999999999999999999 999999999998888889999999
Q ss_pred cCchh------HHHHHhcCCCccchHHHHHHH-HHHHHHhhcc--ccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 133 LPEER------IRAVETGGCPHAAIREDISIN-LGPLEELSNL--FKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 133 v~q~~------~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~--~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
++|.. .+++....++..+..+..+.. .-.|+++... ++++..+.| |||++||++|||+|+ +.+++
T Consensus 417 l~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred hccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 99976 345555566666544332211 1144444333 256666776 999999999999999 89999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
+|| ||.|+|...
T Consensus 497 lLDEPTegLD~~T 509 (573)
T COG4987 497 LLDEPTEGLDPIT 509 (573)
T ss_pred EecCCcccCChhh
Confidence 999 999999754
No 159
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=178.60 Aligned_cols=141 Identities=16% Similarity=0.058 Sum_probs=104.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR----- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~----- 139 (275)
.++.++++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|+||++..
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 4566666667889999999999999999999999999998 9999999888665432 345679999998621
Q ss_pred -----HHHhcC--CCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 140 -----AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 140 -----~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
++.... .......+....+.+.|+.+++. ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 111000 00111122223455677777664 245777777 999999999999999 99999999 89999864
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 189 ~ 189 (327)
T PRK11308 189 V 189 (327)
T ss_pred H
Confidence 3
No 160
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-21 Score=179.72 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=101.4
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----C-CcEEEEeccCCCCChHHHH----HhccccCchhHH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~ 139 (275)
.++.+.++...+|++++|+|+||||||||+++|+|++++ + |+|.+.+.++......+++ +.++|+||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 466666677788999999999999999999999999873 6 9999999888766544433 259999998631
Q ss_pred ----------HHHhcCCC--ccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 140 ----------AVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 140 ----------~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
++...... .....+....+.+.|+.+.+.. ..+..+.+ |+||+||++|||+|+ +|+|+|+| |
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 11000000 0111122234555677766542 24556667 999999999999999 99999999 8
Q ss_pred CCCCCcc
Q 023913 202 SGGDKIP 208 (275)
Q Consensus 202 t~g~d~~ 208 (275)
++++|..
T Consensus 181 ts~LD~~ 187 (326)
T PRK11022 181 TTALDVT 187 (326)
T ss_pred CCCCCHH
Confidence 9999864
No 161
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.1e-22 Score=177.18 Aligned_cols=137 Identities=17% Similarity=0.111 Sum_probs=97.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...++|++|++.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCccCCCCcHH
Confidence 44555666666889999999999999999999999999998 9999988776432 134799998752
Q ss_pred HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 163 (255)
T PRK11248 89 DNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 (255)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 1111110000 11111123344566666555445555666 999999999999999 89999999 999999754
No 162
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.86 E-value=4.9e-21 Score=179.48 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=114.5
Q ss_pred ccCCCCCCC---ccccccCCCCCCCCCCcccccccc-CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913 46 HSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (275)
Q Consensus 46 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~ 120 (275)
...+.-+|. +...+--|+ .+++.+...+|. .+|+.++|+||+|||||||.|+|.|..+|. |.|.+++.++.+
T Consensus 326 m~LP~P~g~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 326 MPLPAPQGALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred CCCCCCCceeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 344445555 444555577 666677666665 669999999999999999999999999998 999999999999
Q ss_pred CChHHHHHhccccCchhH-------HHHH-hcCCCccchHHHH-HHHHHHHHHh--hccccccccccc-----ChhHHHH
Q 023913 121 KEDGEFLMRNGALPEERI-------RAVE-TGGCPHAAIREDI-SINLGPLEEL--SNLFKADLLLCE-----SGGDNLA 184 (275)
Q Consensus 121 ~~~~~~~~~ig~v~q~~~-------~~~~-~~~~~~~~~~~~~-~~~~~~L~~l--~~~~~~d~~~~e-----S~G~~q~ 184 (275)
++..++-+.|||+||+.. +|+. +.. ......-. +.......++ ....++|..+.| |+|||||
T Consensus 403 Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQR 480 (580)
T COG4618 403 WDREQLGRHIGYLPQDVELFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR 480 (580)
T ss_pred CCHHHhccccCcCcccceecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHH
Confidence 999999999999999853 2221 111 11111111 1111122333 235688999988 9999999
Q ss_pred HHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 185 ANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 185 ~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+++||||. +|.+++|| |.+.+|.
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999999 99999999 5556664
No 163
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.86 E-value=2.4e-21 Score=169.96 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=94.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------H
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------A 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------~ 140 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.. +
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 95 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence 3444555556789999999999999999999999999998 9999988776554445566779999998631 1
Q ss_pred HHhcCCCccchHHHHHH------HHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 VETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~------~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+.+. ...... ..... ..+.++.+ ......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 96 l~~~-~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 96 IALA-DPGMSM-ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred hhcc-CCCCCH-HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 1111 111111 11111 01122222 111122334455 999999999999999 99999999 999998754
No 164
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=175.71 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=98.2
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC----C-ChHHHHHhccccCchhHH----
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----K-EDGEFLMRNGALPEERIR---- 139 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~----~-~~~~~~~~ig~v~q~~~~---- 139 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. . ....+++.++|++|++..
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 105 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ 105 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence 555666666889999999999999999999999999998 999998877642 1 123456679999998521
Q ss_pred -----HHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 -----AVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 -----~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+.... ..........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 185 (289)
T PRK13645 106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG 185 (289)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 11111000 011111112333455555542 345566666 999999999999999 99999999 999998654
No 165
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=3e-21 Score=189.39 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=111.3
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ ..+ .+.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+.+.++...+..++++.++|
T Consensus 334 ~~v~f~y~~---~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 334 RNVTFRYPG---RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEcCC---CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 677888876 333 444555556789999999999999999999999999998 999999999888888888999999
Q ss_pred cCchhH------HHHHhcCCC-ccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI------RAVETGGCP-HAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~------~~~~~~~~~-~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +.+...+.+ ..+. +.+..+.+ .+.++.. ..++|..+.| |+||+||++|||+++ +|+
T Consensus 411 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~-~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 411 VSQDVVLFNDTIANNIAYGRTEQADR-AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred EccCcccccccHHHHHhcCCCCCCCH-HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999973 222222322 2222 22222111 2333222 2356666665 999999999999999 899
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+|+| ||+++|...
T Consensus 490 illLDEpts~LD~~~ 504 (571)
T TIGR02203 490 ILILDEATSALDNES 504 (571)
T ss_pred EEEEeCccccCCHHH
Confidence 99999 888888643
No 166
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=7.8e-22 Score=172.06 Aligned_cols=149 Identities=15% Similarity=0.046 Sum_probs=103.8
Q ss_pred ccccccCCCCCCC---CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHH
Q 023913 55 SHEPIYSPGYFSR---RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFL 127 (275)
Q Consensus 55 ~~~~~~~~~~~~~---~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~ 127 (275)
+++.+.|++ + ..++.+.++...+|++++|+||||||||||+++|+|+++ |+ |+|.+.+.++. ...++
T Consensus 7 ~~~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 7 WDVGLKAKN---WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ecceeeeec---CccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 567788887 4 345555556668899999999999999999999999998 77 99999887653 23456
Q ss_pred HhccccCchhH--------HHHHhcCCCcc---chHHHH-HHHHH-HHHHhhccccccccccc-ChhHHHHHHHHHHhc-
Q 023913 128 MRNGALPEERI--------RAVETGGCPHA---AIREDI-SINLG-PLEELSNLFKADLLLCE-SGGDNLAANFSRELA- 192 (275)
Q Consensus 128 ~~ig~v~q~~~--------~~~~~~~~~~~---~~~~~~-~~~~~-~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~- 192 (275)
+.++|++|++. +++.+...... ...... ..... .++.+......+..+.+ |+||+||+++||+|+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 67999999852 22221100000 000001 11122 45555444444555666 999999999999999
Q ss_pred CceEEEEe-CCCCCCccc
Q 023913 193 DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 ~~~vlllD-~t~g~d~~~ 209 (275)
+|+++|+| |++++|...
T Consensus 161 ~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 161 DPKVLILDEPTSGLDSFT 178 (226)
T ss_pred CCCEEEEeCCCcCCCHHH
Confidence 99999999 888988643
No 167
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.2e-21 Score=172.88 Aligned_cols=138 Identities=21% Similarity=0.092 Sum_probs=110.2
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH----HhccccCchhH-------
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI------- 138 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~------- 138 (275)
+.+.++....||++.|+|-+|||||||++++.++++|+ |+|.+.+.|+...++++++ +++++|||.+.
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 34455556779999999999999999999999999999 9999999999988876654 46999999863
Q ss_pred -HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 -RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 -~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
++..++..... ...+....+.+.|+.+++....+.++.| ||||+||+.|||||+ +|+|+|+| |.+.+|+.
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 23333332222 1233345667788888888888888989 999999999999999 99999999 77777764
No 168
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=6e-22 Score=175.48 Aligned_cols=142 Identities=16% Similarity=0.095 Sum_probs=100.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-------------hHHHHHhcccc
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGAL 133 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-------------~~~~~~~ig~v 133 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 44555666667889999999999999999999999999998 99999887764321 12445679999
Q ss_pred CchhH--------HHHHhcCC--CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 134 PEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~--~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+|++. +++.++.. ...........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99852 11111100 0001111112334456666555445566666 999999999999999 89999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 173 P~~~LD~~~ 181 (252)
T TIGR03005 173 VTSALDPEL 181 (252)
T ss_pred CcccCCHHH
Confidence 899998754
No 169
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=188.02 Aligned_cols=143 Identities=15% Similarity=0.070 Sum_probs=104.3
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~------ 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++........ ++.++|++|++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 444555666666789999999999999999999999999998 999998887654333332 356999999852
Q ss_pred --HHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 --RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 --~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.++.... .........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++||| |++++|..
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 2222221110 01111123345567777766666777777 999999999999999 99999999 99999875
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 176 ~ 176 (501)
T PRK10762 176 E 176 (501)
T ss_pred H
Confidence 4
No 170
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.7e-21 Score=168.36 Aligned_cols=139 Identities=18% Similarity=0.121 Sum_probs=96.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~ 140 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++. ++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 4555555666789999999999999999999999999998 999998877655444556778999999852 22
Q ss_pred HHhcCCCccchHHHHHH------HHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 VETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~------~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+.+... .... ..... ..+.++.+ ......+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...
T Consensus 96 l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 96 IAYGRP-GATR-EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred hhccCC-CCCH-HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 222111 1111 11111 11222222 112223344445 999999999999999 89999999 999998754
No 171
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.6e-21 Score=168.70 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=98.7
Q ss_pred ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCc
Q 023913 57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (275)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (275)
..+.|++ .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus 6 l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 82 (236)
T cd03253 6 VTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ 82 (236)
T ss_pred EEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence 3444543 344555666666889999999999999999999999999998 999998877765555556678999999
Q ss_pred hhHHH-------HHhcCCCccchHHHHHHH------HHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 136 ERIRA-------VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 136 ~~~~~-------~~~~~~~~~~~~~~~~~~------~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
++..+ +.+. ...... ...... .+.+..+ ......+..+.+ |+||+||++|||+|+ +|+++|
T Consensus 83 ~~~~~~~tv~~nl~~~-~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 83 DTVLFNDTIGYNIRYG-RPDATD-EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CChhhcchHHHHHhhc-CCCCCH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 86321 1111 111111 111110 1111111 011112223344 999999999999999 899999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++++|...
T Consensus 161 lDEP~~~LD~~~ 172 (236)
T cd03253 161 LDEATSALDTHT 172 (236)
T ss_pred EeCCcccCCHHH
Confidence 99 999999754
No 172
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=2e-21 Score=173.52 Aligned_cols=142 Identities=18% Similarity=0.101 Sum_probs=100.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR---- 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~---- 139 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++..
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 34555666666889999999999999999999999999998 9999988877654332 245679999998521
Q ss_pred ------HHHhcC--CCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 140 ------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 140 ------~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
++.... ............+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 111000 00000011122344566666553 344556666 999999999999999 99999999 8999987
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 184 ~~ 185 (265)
T TIGR02769 184 VL 185 (265)
T ss_pred HH
Confidence 53
No 173
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.85 E-value=1.1e-21 Score=182.34 Aligned_cols=136 Identities=19% Similarity=0.084 Sum_probs=99.8
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhH--------H
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~--------~ 139 (275)
+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.... ....++.++|++|++. +
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 555566789999999999999999999999999998 99999887765321 1234567999999852 2
Q ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.++.. .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 95 nl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~ 166 (354)
T TIGR02142 95 NLRYGMK-RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166 (354)
T ss_pred HHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 2222111 111111122345566767666566777777 999999999999999 99999999 999998754
No 174
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.85 E-value=4.7e-21 Score=166.96 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=102.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+.|++.- ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus 15 ~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 15 QNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred EEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 44555565410 123555555566789999999999999999999999999998 9999988776544444556779999
Q ss_pred CchhHHHHH-----hc-CCCccchHH---HH--HHHHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 134 PEERIRAVE-----TG-GCPHAAIRE---DI--SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 134 ~q~~~~~~~-----~~-~~~~~~~~~---~~--~~~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
+|++..+.. +. +........ .. ....+.++.+ +.....+..+.+ |+||+||++|||+|+ +|+++|
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998632211 10 111111111 00 0112344444 233334555556 999999999999999 899999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++++|...
T Consensus 174 lDEPt~~LD~~~ 185 (226)
T cd03248 174 LDEATSALDAES 185 (226)
T ss_pred EeCCcccCCHHH
Confidence 99 888888643
No 175
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.8e-22 Score=191.03 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=105.9
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI---- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~---- 138 (275)
|++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++........ ++.++|++|++.
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 33445566666667889999999999999999999999999998 999998888765444333 346999999852
Q ss_pred ----HHHHhcCCCc-----c---chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ----RAVETGGCPH-----A---AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ----~~~~~~~~~~-----~---~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++.... . ...+....+.+.++.+......++.+.+ |+||+||++||++|+ +|+|+|+| |++
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~ 174 (510)
T PRK09700 95 LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174 (510)
T ss_pred CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 2222221110 0 0111223445567777766666777777 999999999999999 99999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 175 ~LD~~~ 180 (510)
T PRK09700 175 SLTNKE 180 (510)
T ss_pred CCCHHH
Confidence 998654
No 176
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.85 E-value=4.5e-21 Score=168.36 Aligned_cols=138 Identities=17% Similarity=0.087 Sum_probs=94.5
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH-------
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV------- 141 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~------- 141 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+.
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 455555666789999999999999999999999999998 999998877654444555667999999863211
Q ss_pred HhcCCCccchHHHHHHH------HHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~------~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+. ...... ...... .+.+..+ ......+..+.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus 98 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 98 RYG-KPDATD-EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred hcc-CCCCCH-HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 111111 111110 1111111 111123344455 999999999999999 99999999 999999754
No 177
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=6.9e-22 Score=173.67 Aligned_cols=145 Identities=17% Similarity=0.051 Sum_probs=99.4
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCch-hH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE-RI--- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~-~~--- 138 (275)
.|+.+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+... ....+++.++|++|+ +.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCC
Confidence 344555666666667889999999999999999999999999998 999988765432 223455679998743 21
Q ss_pred -----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... ....+....+...++.+......+..+.+ |+||+||+.||++|+ +|+++|+| |++++|...
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1111110000 01111112233455555554445666666 999999999999999 89999999 899998654
No 178
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=8.4e-22 Score=191.23 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=104.6
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI---- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~---- 138 (275)
|+++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......++ +.+||++|++.
T Consensus 21 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 33445566666667889999999999999999999999999998 9999988877654444433 35899999852
Q ss_pred ----HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.... .......+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 101 ~tv~e~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~ 175 (510)
T PRK15439 101 LSVKENILFGLPK---RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE 175 (510)
T ss_pred CcHHHHhhccccc---chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 112121110 111123345567777666566777777 999999999999999 99999999 999998653
No 179
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.3e-22 Score=174.31 Aligned_cols=143 Identities=15% Similarity=0.048 Sum_probs=97.8
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCC--CCChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~--~~~~~~~~~~ig~v~q~~~ 138 (275)
.+.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++. ......+++.++|++|++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 34555566666788999999999999999999999999886 4 99999888765 2233455678999999852
Q ss_pred --------HHHHhcCCC-cc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 139 --------RAVETGGCP-HA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 139 --------~~~~~~~~~-~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+++.++... .. ........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111100 00 0111112223344444321 123445555 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 176 P~~~LD~~~ 184 (253)
T PRK14267 176 PTANIDPVG 184 (253)
T ss_pred CCccCCHHH
Confidence 899998754
No 180
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.9e-21 Score=170.61 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=99.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.......+++.++|+||++.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t 94 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS 94 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence 445666666678899999999999999999999999974 56 999999888765544456678999999863
Q ss_pred --HHHHhcCCCcc---chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 --RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 --~~~~~~~~~~~---~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+++.+...... ........+.+.++.+... ...+..+.+ |+||+||+++||+|+ +|+++|+| |++++|
T Consensus 95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 12211110000 0011112233455555442 123444555 999999999999999 99999999 899998
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 175 ~~~ 177 (246)
T PRK14269 175 PIS 177 (246)
T ss_pred HHH
Confidence 754
No 181
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=2.2e-21 Score=187.39 Aligned_cols=143 Identities=13% Similarity=-0.036 Sum_probs=103.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH---
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE--- 142 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~--- 142 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.....
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 345566666667889999999999999999999999999998 9998877666544444556679999997521110
Q ss_pred -----hcCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 143 -----TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 143 -----~~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
......... ......+.+.++.+......++.+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 000011100 11122344567777665556777777 999999999999999 99999999 999998654
No 182
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=7.2e-22 Score=170.21 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=96.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. . .+++.++|++|+..
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecCCCcCCCCCcHH
Confidence 44555666666889999999999999999999999999998 999988866431 1 25667899987542
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+....... ....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 92 ~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 162 (207)
T PRK13539 92 ENLEFWAAFLGG---EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162 (207)
T ss_pred HHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111110000000 011234456666554444555566 999999999999999 89999999 898988654
No 183
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=1.7e-21 Score=159.79 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=108.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH---
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE--- 142 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~--- 142 (275)
+.+.+.+.++...+|++++|+||+|||||||+|+++.+..|+ |.+.+-|.++.+..+..+++.++|+.|.+..+-.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 445555555666889999999999999999999999999999 9999999999998999999999999998732110
Q ss_pred hcC-CCc--cchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 143 TGG-CPH--AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 143 ~~~-~~~--~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
-+. .|. -..+.+.....+.|.++.+.. .++..+.+ |||++||++++|.|. -|.|++|| +|+.+|...+
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 000 010 001113344455677776544 34555556 999999999999998 89999999 7778887554
No 184
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.2e-21 Score=168.85 Aligned_cols=136 Identities=21% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHh
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~ 143 (275)
+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+.++|++|++. +++.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence 555666789999999999999999999999999998 999998887654322 2457999999852 22222
Q ss_pred cCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
........ ......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 21111111 11223345566666665556777777 999999999999999 99999999 9999997643
No 185
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.85 E-value=8.9e-22 Score=174.97 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=100.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-------------ChHHHHHhcccc
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-------------EDGEFLMRNGAL 133 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-------------~~~~~~~~ig~v 133 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.++|+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 44566666667889999999999999999999999999998 9999988765321 112445679999
Q ss_pred CchhH--------HHHHhcCCC--ccchHHHHHHHHHHHHHhhccccc-cccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 134 PEERI--------RAVETGGCP--HAAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~-d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
+|++. +++.++... ..........+.+.++.+...... +..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99862 111111100 001111122344566666554432 555666 999999999999999 99999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 178 EPt~~LD~~~ 187 (257)
T PRK10619 178 EPTSALDPEL 187 (257)
T ss_pred CCcccCCHHH
Confidence 999998754
No 186
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=2.8e-21 Score=169.96 Aligned_cols=142 Identities=13% Similarity=0.025 Sum_probs=97.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHH-HhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~----- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|++ +|+ |+|.+.+.++......... ..++|++|++.
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 44555666666889999999999999999999999995 677 9999998877654443333 34899999852
Q ss_pred ---HHHHhcC---CCc-----cchHHHHHHHHHHHHHhhccc-ccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 ---RAVETGG---CPH-----AAIREDISINLGPLEELSNLF-KADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ---~~~~~~~---~~~-----~~~~~~~~~~~~~L~~l~~~~-~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.... ... ....+....+.+.++.+.... ..+..+. + |+||+||++|||+|+ +|+++|+| |+
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 1111110 000 001111123344566665542 3445554 3 999999999999999 89999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 173 ~~LD~~~ 179 (243)
T TIGR01978 173 SGLDIDA 179 (243)
T ss_pred ccCCHHH
Confidence 9998754
No 187
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.85 E-value=8.8e-22 Score=170.78 Aligned_cols=136 Identities=21% Similarity=0.180 Sum_probs=93.6
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------H
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------A 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------~ 140 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.. +
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 3555566666789999999999999999999999999998 9999988776544444556679999998631 1
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHhhccccccc-----------cccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~-----------~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+.+. ..... ... ..+.++.+......+. .+.+ |+||+||+.|||+++ +|+++|+| |++++|
T Consensus 98 l~~~-~~~~~-~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD 172 (220)
T cd03245 98 ITLG-APLAD-DER---ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172 (220)
T ss_pred hhcC-CCCCC-HHH---HHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 1111 11111 111 1122332222211111 2234 999999999999999 89999999 899988
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 173 ~~~ 175 (220)
T cd03245 173 MNS 175 (220)
T ss_pred HHH
Confidence 654
No 188
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.6e-21 Score=186.64 Aligned_cols=144 Identities=11% Similarity=0.002 Sum_probs=104.9
Q ss_pred CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHH-HHHhccccCchhH---
Q 023913 66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--- 138 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~--- 138 (275)
++..++.+.++...+|++++|+||||||||||+++|+|+++| + |+|.+.+.++....... .++.+||++|++.
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 344555566666788999999999999999999999999986 6 99999888876544333 3456999999852
Q ss_pred -----HHHHhcCCCc----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 -----RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 -----~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+++.++.... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 175 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT 175 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 2222221111 11111223345567777665556777777 999999999999999 99999999 899998
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 176 ~~~ 178 (506)
T PRK13549 176 ESE 178 (506)
T ss_pred HHH
Confidence 654
No 189
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=172.43 Aligned_cols=143 Identities=14% Similarity=0.070 Sum_probs=97.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.. .....+++.++|++|++.
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 3445556666668899999999999999999999999987 56 999998877642 234456677999999852
Q ss_pred -------HHHHhcCCCccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913 139 -------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (275)
Q Consensus 139 -------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g 204 (275)
+++.+..............+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |+++
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 112111110000011111223344444321 224555555 999999999999999 99999999 8999
Q ss_pred CCccc
Q 023913 205 DKIPR 209 (275)
Q Consensus 205 ~d~~~ 209 (275)
+|...
T Consensus 185 LD~~~ 189 (269)
T PRK14259 185 LDPIS 189 (269)
T ss_pred CCHHH
Confidence 98754
No 190
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=175.26 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=102.8
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++ ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+.++|+
T Consensus 10 ~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v 83 (272)
T PRK15056 10 NDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYV 83 (272)
T ss_pred EeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEe
Confidence 344455543 345555666667789999999999999999999999999998 999998876531 1112359999
Q ss_pred CchhHH----------HHHhcCCCc-c----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERIR----------AVETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~~----------~~~~~~~~~-~----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
+|++.. ++.++.... . ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 998521 000110000 0 0011122334456666655555667777 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| |++++|...
T Consensus 164 lllDEPt~~LD~~~ 177 (272)
T PRK15056 164 ILLDEPFTGVDVKT 177 (272)
T ss_pred EEEeCCCccCCHHH
Confidence 9999 999998654
No 191
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.4e-21 Score=170.90 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=97.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+++.++|++|++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 4455565566678999999999999999999999999986 4 9999988776421 22345677999999852
Q ss_pred ------HHHHhcCCCcc--chHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPHA--AIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++..... ........+.+.++.+.. ....+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 100 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 179 (254)
T PRK14273 100 FLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179 (254)
T ss_pred ccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 12222110000 001111223334444432 1234555666 999999999999999 99999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 180 ~LD~~~ 185 (254)
T PRK14273 180 ALDPIS 185 (254)
T ss_pred ccCHHH
Confidence 998754
No 192
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=1.1e-21 Score=174.89 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=101.5
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCC-----ChHHHHHhccccCchh
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDGEFLMRNGALPEER 137 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~-----~~~~~~~~ig~v~q~~ 137 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.++|+||++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 345566666666889999999999999999999999999863 8999988776432 1234456799999985
Q ss_pred H--------HHHHhcCCCcc--------ch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 138 I--------RAVETGGCPHA--------AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 138 ~--------~~~~~~~~~~~--------~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
. +++.++..... .. ......+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 2 12222110000 00 11123345566666665555666667 999999999999999 999999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++++|...
T Consensus 176 lDEPt~~LD~~~ 187 (262)
T PRK09984 176 ADEPIASLDPES 187 (262)
T ss_pred ecCccccCCHHH
Confidence 99 999998754
No 193
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=171.31 Aligned_cols=143 Identities=16% Similarity=0.105 Sum_probs=97.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCC--hHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.... ...+++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 44556666666788999999999999999999999999874 6 99999887764321 2345667999999852
Q ss_pred -------HHHHhcCCCc-cchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 -------RAVETGGCPH-AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 -------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... .........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 1111110000 01111112233455554331 223455556 999999999999999 89999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 184 ~LD~~~ 189 (258)
T PRK14268 184 ALDPIS 189 (258)
T ss_pred ccCHHH
Confidence 998754
No 194
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.9e-22 Score=183.47 Aligned_cols=137 Identities=17% Similarity=0.055 Sum_probs=98.4
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhHHHHHhcCCC
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.... ....++.++|++|++..+..+....
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 555566789999999999999999999999999998 99999887764321 2234567999999853111110000
Q ss_pred ccch---HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 148 HAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 148 ~~~~---~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+..+ ......+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~ 163 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 0000 01112344566777665556777777 999999999999999 99999999 899998653
No 195
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=6.4e-21 Score=168.76 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=100.9
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~ 141 (275)
++.+.++...+|++++|+|+||||||||+++|+|++++.|+|.+.+.++.......+++.++|++|++. +++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 455555666789999999999999999999999998656999999888765555556667999999752 222
Q ss_pred HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc--------CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~--------~~~vlllD-~t~g~d~~~ 209 (275)
.+..............+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 222111111111123345566666555555666666 999999999999998 45999999 999998754
No 196
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=6.9e-22 Score=166.43 Aligned_cols=118 Identities=22% Similarity=0.208 Sum_probs=89.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--hHHHHHhccccCchhHHHHHhc
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETG 144 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~~~~~~ 144 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.++|++|++..+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---- 88 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF---- 88 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccC----
Confidence 44555666666889999999999999999999999999998 99999988776543 345667899999874211
Q ss_pred CCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+..+..+.+. .. . |+||+||+.+||+|+ +|+++|+| |++++|...
T Consensus 89 --~~~t~~~~l~----------~~----l----S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 89 --PHLTVLENIA----------LG----L----SGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred --CCCCHHHhee----------ec----C----CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 1112111110 00 2 999999999999999 89999999 888888643
No 197
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=3.4e-21 Score=170.73 Aligned_cols=142 Identities=17% Similarity=0.098 Sum_probs=98.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc-----CCCCChHHH----HHhccccCchh
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEER 137 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d-----~~~~~~~~~----~~~ig~v~q~~ 137 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+ +......+. .+.++|++|++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 44555666666789999999999999999999999999998 999998765 443333322 24689999985
Q ss_pred HH----------HHHhc--CCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 138 IR----------AVETG--GCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 138 ~~----------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
.. ++... .............+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 21 11100 000000011112334456666554 245556666 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 176 ~~~LD~~~ 183 (253)
T TIGR02323 176 TGGLDVSV 183 (253)
T ss_pred CccCCHHH
Confidence 99998754
No 198
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.85 E-value=1e-21 Score=157.67 Aligned_cols=124 Identities=23% Similarity=0.208 Sum_probs=91.7
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~ 151 (275)
+.++...+|++++|+|+||||||||+++|+|.++|+ |.|.+.+.++.......+++.++|++|+...+..+ ++
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------tv 76 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGL------TV 76 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS------BH
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccc------cc
Confidence 344556789999999999999999999999999998 99999988887655567778899999984322111 11
Q ss_pred H--HHHHHHHHHHHHhhccccccccc----cc-ChhHHHHHHHHHHhc-CceEEEEeCC
Q 023913 152 R--EDISINLGPLEELSNLFKADLLL----CE-SGGDNLAANFSRELA-DYIIYIIDVS 202 (275)
Q Consensus 152 ~--~~~~~~~~~L~~l~~~~~~d~~~----~e-S~G~~q~~~laral~-~~~vlllD~t 202 (275)
. .......+.++.+......+..+ .+ |+||+||++||++|+ +|.++|+|.+
T Consensus 77 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 77 RENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 11123344555554444344444 55 999999999999999 8999999943
No 199
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=170.59 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=96.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|++. |+ |+|.+.+.++... ....+++.++|++|++.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 445556666668899999999999999999999999864 46 9999988776532 23345678999999852
Q ss_pred ------HHHHhcCCCc-c-chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~-~-~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++.... . ........+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~ 178 (253)
T PRK14242 99 FPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178 (253)
T ss_pred CcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1221110000 0 00111122233444443321 23444555 999999999999999 89999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 179 ~LD~~~ 184 (253)
T PRK14242 179 ALDPIA 184 (253)
T ss_pred cCCHHH
Confidence 998754
No 200
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=5e-21 Score=187.27 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=109.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.||+ +..++.+.++..++|++++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|+
T Consensus 326 ~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 402 (547)
T PRK10522 326 RNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402 (547)
T ss_pred EEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEE
Confidence 677788876 444555666667889999999999999999999999999998 9999999998877777888999999
Q ss_pred CchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccc---ccc--cc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD---LLL--CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 134 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d---~~~--~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+|++..+..+-....... ......+.++.+....... ..+ .. |+||+||+++||+++ +|+++|+| ||+++
T Consensus 403 ~q~~~lf~~ti~~n~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L 480 (547)
T PRK10522 403 FTDFHLFDQLLGPEGKPA--NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480 (547)
T ss_pred ecChhHHHHhhccccCch--HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999854433222111111 1112233444443222111 111 12 999999999999999 99999999 89899
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|...
T Consensus 481 D~~~ 484 (547)
T PRK10522 481 DPHF 484 (547)
T ss_pred CHHH
Confidence 8754
No 201
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.9e-21 Score=165.13 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=100.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHHHhc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRN 130 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~~~i 130 (275)
.++.|.||..-+++.++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.... ...++.+
T Consensus 7 ~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i 85 (202)
T cd03233 7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEI 85 (202)
T ss_pred EccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceE
Confidence 4667778752123445556666678899999999999999999999999998 77 99999887765432 3455679
Q ss_pred cccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 131 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 131 g~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+|++|++. ..+..+..+.+.... .. ..+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus 86 ~~~~q~~~------~~~~~tv~~~l~~~~----~~----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~ 151 (202)
T cd03233 86 IYVSEEDV------HFPTLTVRETLDFAL----RC----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151 (202)
T ss_pred EEEecccc------cCCCCcHHHHHhhhh----hh----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence 99998742 122233333332110 00 03444445 999999999999999 89999999 8989886
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 152 ~~ 153 (202)
T cd03233 152 ST 153 (202)
T ss_pred HH
Confidence 54
No 202
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2e-21 Score=168.62 Aligned_cols=147 Identities=17% Similarity=0.096 Sum_probs=99.4
Q ss_pred cccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 56 HEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 56 ~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
+..+.|++ .. .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus 7 ~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 7 NVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred EEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence 34455554 32 4555566666789999999999999999999999999998 9999988877655555667789999
Q ss_pred CchhHHHHH-----hcCCCccchHHHHHHHHHHHHHhhccc-----------cccccccc-ChhHHHHHHHHHHhc-Cce
Q 023913 134 PEERIRAVE-----TGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 134 ~q~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~l~~~~-----------~~d~~~~e-S~G~~q~~~laral~-~~~ 195 (275)
+|++..+.. +....... .... .+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+
T Consensus 84 ~q~~~l~~~tv~enl~~~~~~~-~~~~---~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 84 PQDPVLFSGTIRSNLDPFGEYS-DEEL---WQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred CCCCccccchHHHHhCcCCCCC-HHHH---HHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998631110 11000111 1111 11222221111 11223344 999999999999999 899
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
++|+| |++++|...
T Consensus 160 llllDEP~~~LD~~~ 174 (221)
T cd03244 160 ILVLDEATASVDPET 174 (221)
T ss_pred EEEEeCccccCCHHH
Confidence 99999 899998754
No 203
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=4.9e-21 Score=165.60 Aligned_cols=136 Identities=18% Similarity=0.116 Sum_probs=98.3
Q ss_pred cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHH
Q 023913 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE 142 (275)
Q Consensus 72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~ 142 (275)
.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... .+++.++|++|++. +++.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHH
Confidence 3555566789999999999999999999999999998 99999887765422 34567999999852 2221
Q ss_pred hcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 143 TGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 143 ~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+....... .......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 163 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 11111110 011122334466666555555666666 999999999999999 89999999 899998754
No 204
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=6.2e-21 Score=171.18 Aligned_cols=143 Identities=20% Similarity=0.163 Sum_probs=102.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---------CCcEEEEeccCCCCChHHHHHhccccCchh
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---------~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++| .|+|.+.+.++.......+++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 34455566666688999999999999999999999999987 489999888776555555666789999875
Q ss_pred H--------HHHHhcCCCcc---c--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc----------C
Q 023913 138 I--------RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----------D 193 (275)
Q Consensus 138 ~--------~~~~~~~~~~~---~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~----------~ 193 (275)
. +++.+...... . ..+....+.+.++.+......+..+.+ |+||+||++|||+|+ +
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 2 22222211110 0 011222344566666555555666666 999999999999998 7
Q ss_pred ceEEEEe-CCCCCCccc
Q 023913 194 YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 194 ~~vlllD-~t~g~d~~~ 209 (275)
|+++|+| |++++|...
T Consensus 173 p~lllLDEPt~~LD~~~ 189 (272)
T PRK13547 173 PRYLLLDEPTAALDLAH 189 (272)
T ss_pred CCEEEEcCccccCCHHH
Confidence 9999999 899998654
No 205
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.6e-21 Score=170.71 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=101.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEF 126 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~ 126 (275)
.+..+.|++ ..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.. .....+
T Consensus 17 ~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 17 RNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 344455543 445556666667899999999999999999999999986 46 999998877643 223455
Q ss_pred HHhccccCchhH-------HHHHhcCCC--ccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913 127 LMRNGALPEERI-------RAVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA 192 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~ 192 (275)
++.++|++|++. +++.+.... ..........+.+.++.+... ...+..+.+ |+||+||++|||+|+
T Consensus 93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 678999999852 111111000 011111112333455554431 223445555 999999999999999
Q ss_pred -CceEEEEe-CCCCCCccc
Q 023913 193 -DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 -~~~vlllD-~t~g~d~~~ 209 (275)
+|+++|+| |++++|...
T Consensus 173 ~~p~lllLDEPt~~LD~~~ 191 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPIS 191 (260)
T ss_pred CCCCEEEEcCCCccCCHHH
Confidence 99999999 899998754
No 206
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.9e-21 Score=168.34 Aligned_cols=138 Identities=13% Similarity=0.014 Sum_probs=97.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+.++|++|++.
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~---~~~~~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLST 99 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc---hhhhhceEEeecCcccccCCcH
Confidence 445566666667889999999999999999999999999998 999998876643 233456899998742
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+...... . .......+.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 100 ~e~l~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (214)
T PRK13543 100 LENLHFLCGLHG-R-RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEG 172 (214)
T ss_pred HHHHHHHHHhcC-C-cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11111100000 0 0111223455555555455666666 999999999999999 99999999 888888644
No 207
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=5.9e-21 Score=203.57 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=116.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---------------------------
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--------------------------- 107 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--------------------------- 107 (275)
.++.|.||++ ++.+++.+.++..++|++++|+|++|||||||+++|+|+++|
T Consensus 1169 ~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1169 MDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 7889999861 122455555556678999999999999999999999999998
Q ss_pred ---------------------------C-CcEEEEeccCCCCChHHHHHhccccCchhH-------HHHHhcCCCccchH
Q 023913 108 ---------------------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAAIR 152 (275)
Q Consensus 108 ---------------------------~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~~~~~~~~~~~~~ 152 (275)
+ |+|.+++.++.+.+...+++.++||+|++. +|+.++ .+..+..
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g-~~~at~e 1326 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATRE 1326 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcC-CCCCCHH
Confidence 5 999999999998888999999999999983 344343 3433332
Q ss_pred HHHHHHH--HHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 153 EDISINL--GPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 153 ~~~~~~~--~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+ +..+. ..+.+|. +..+++..+.| ||||+||++|||||+ +|+|+||| ||+.+|...
T Consensus 1327 e-I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1327 D-VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred H-HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 2 21111 1233332 34577888887 999999999999999 99999999 888888643
No 208
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.8e-21 Score=170.42 Aligned_cols=141 Identities=14% Similarity=0.019 Sum_probs=99.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~ 146 (275)
...+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+.++|++|++..+...+..
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHH
Confidence 34444555556789999999999999999999999999998 999998877654332 246799999986321110100
Q ss_pred Ccc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 147 PHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 147 ~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
.+. ........+...++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|....
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 166 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 000 0111112334456666555555666666 999999999999999 99999999 9999987653
No 209
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.2e-21 Score=171.12 Aligned_cols=143 Identities=16% Similarity=0.091 Sum_probs=98.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+++.++|++|++.
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 34455566666788999999999999999999999999874 6 9999988776532 23455677999999852
Q ss_pred -------HHHHhcCCCc-c--chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 139 -------RAVETGGCPH-A--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 139 -------~~~~~~~~~~-~--~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
+++.++.... . ........+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1222111000 0 01111122334555554421 23445556 999999999999999 99999999 9
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 191 t~~LD~~~ 198 (267)
T PRK14235 191 CSALDPIA 198 (267)
T ss_pred CcCCCHHH
Confidence 99998754
No 210
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-21 Score=178.42 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=101.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC----CC-CcEEEEeccCCCCChHHHH----HhccccCchhH
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~----~~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~ 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++ ++ |+|.+.+.++......++. +.++|+||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 345666666778899999999999999999999999986 46 9999999887665544332 36999999863
Q ss_pred H----------HHHhc--CC-Ccc----chHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 139 R----------AVETG--GC-PHA----AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 139 ~----------~~~~~--~~-~~~----~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
. ++... +. ... ...+....+.+.|+.+++.. ..+..+.+ |+||+||++|||+|+ +|+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 1 11100 00 000 00111234455677776643 23556666 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| |++++|...
T Consensus 180 lilDEPts~LD~~~ 193 (330)
T PRK15093 180 LIADEPTNAMEPTT 193 (330)
T ss_pred EEEeCCCCcCCHHH
Confidence 9999 899998643
No 211
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=4.1e-21 Score=158.00 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=105.4
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---H-HHhccccCchhHHHHHhc
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERIRAVETG 144 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~~~~~~~ 144 (275)
++..+.+...+||.++|+||+||||||||-.++|+-.|+ |.|.+.+.+....+... + .+++|||||.+.....++
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~lt 104 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLT 104 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccch
Confidence 344555667789999999999999999999999999999 99999999988775432 2 246999999873222222
Q ss_pred CCCcc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 145 GCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 145 ~~~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
..++. .....+..+.+.|+.+++......++.+ |+|++||++|||||+ .|.|++.| ||..+|..
T Consensus 105 AlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 105 ALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred hhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 11111 1122334556688888888888777777 999999999999999 89999999 66666653
No 212
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.5e-21 Score=169.96 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=96.6
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC--CChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.. .....+++.++|++|++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 4455566666688999999999999999999999999863 5 999998877642 223455677999999752
Q ss_pred -------HHHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.+...... ........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC 176 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111100000 1111112223344444331 233455555 999999999999999 99999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 177 ~~LD~~~ 183 (258)
T PRK14241 177 SALDPIS 183 (258)
T ss_pred ccCCHHH
Confidence 9998754
No 213
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.84 E-value=9.3e-21 Score=165.89 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=94.7
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHh
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~ 143 (275)
+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+|++|++. +++.+
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHHH
Confidence 344455779999999999999999999999999998 999998877654322 2378888742 22222
Q ss_pred cC---CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 144 GG---CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 144 ~~---~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
.. .......+....+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 10 01111111122334566666655555666677 999999999999999 99999999 9999997543
No 214
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=1.1e-20 Score=189.55 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=111.9
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.+++|.|++ +.+ ++.+.++..++|+.++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+..++++.++|
T Consensus 459 ~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~ 535 (694)
T TIGR01846 459 ENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535 (694)
T ss_pred EEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence 778888876 444 455555566789999999999999999999999999998 999999999988888899999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
++|++. +++.+ +.+..+..+.... ....+.++. ...+++..+.| |+||+||+++||+++ +|++
T Consensus 536 v~q~~~lf~~ti~eNi~~-~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 536 VLQENVLFSRSIRDNIAL-CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred EccCCeehhhhHHHHHhc-CCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 999973 23322 2333332221111 111222221 12356666655 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 615 lilDEpts~LD~~~ 628 (694)
T TIGR01846 615 LIFDEATSALDYES 628 (694)
T ss_pred EEEECCCcCCCHHH
Confidence 9999 888988654
No 215
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.8e-21 Score=183.59 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=103.5
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~------ 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 345566666667889999999999999999999999999998 9999998877544332 33457999999852
Q ss_pred --HHHHhcCCCcc----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~~~----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++..... ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 22222211110 1111123344566666655555666777 999999999999999 99999999 899998653
No 216
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.84 E-value=1.6e-21 Score=169.61 Aligned_cols=138 Identities=16% Similarity=0.038 Sum_probs=96.6
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~ 146 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... . .+.++|+||++..+...+..
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHH
Confidence 44555565566789999999999999999999999999998 9999888765321 1 25789999875211100000
Q ss_pred Cccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+..+ ......+.+.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 89 ENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 00000 00012234456666555555666666 999999999999999 89999999 999998764
No 217
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.84 E-value=1.1e-20 Score=164.54 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=94.6
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec----cCCCCChHH---H-HHhccccCchhHH-
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE---F-LMRNGALPEERIR- 139 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~----d~~~~~~~~---~-~~~ig~v~q~~~~- 139 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+. ++....... + .+.++|++|++..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI 102 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence 455555556789999999999999999999999999998 99988742 333233222 2 3469999998631
Q ss_pred -------HHHhcCC-CccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 140 -------AVETGGC-PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 140 -------~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
++..... ...........+.+.++.+..... .+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus 103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 182 (224)
T TIGR02324 103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182 (224)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 1111100 011111112233445666655432 3555666 999999999999999 89999999 8888875
Q ss_pred c
Q 023913 208 P 208 (275)
Q Consensus 208 ~ 208 (275)
.
T Consensus 183 ~ 183 (224)
T TIGR02324 183 A 183 (224)
T ss_pred H
Confidence 4
No 218
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=1.3e-20 Score=184.25 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=108.1
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.||+ .. .++.+.++..++|+.++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus 320 ~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 396 (544)
T TIGR01842 320 ENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396 (544)
T ss_pred EEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEE
Confidence 677788875 43 4455555566789999999999999999999999999998 999999998887777788889999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +++.... +..+.. .+..+.+ .++++.. ..+++..+.| |+||+||+++||+++ +|+
T Consensus 397 v~q~~~lf~~ti~~Ni~~~~-~~~~~~-~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 397 LPQDVELFPGTVAENIARFG-ENADPE-KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred ecCCcccccccHHHHHhccC-CCCCHH-HHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 999973 2222222 222221 1111111 1222211 2244554544 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
++|+| |++++|...
T Consensus 475 ililDEpts~LD~~~ 489 (544)
T TIGR01842 475 LVVLDEPNSNLDEEG 489 (544)
T ss_pred EEEEeCCccccCHHH
Confidence 99999 888998654
No 219
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.4e-21 Score=159.82 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=88.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~ 146 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++.. .
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~------~ 85 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSL------Y 85 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCcc------c
Confidence 34455555666789999999999999999999999999998 99999887765433 4556679999998421 1
Q ss_pred CccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+..+..+.+. . |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 86 ~~~tv~~~~~----------------L----S~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 130 (173)
T cd03230 86 ENLTVRENLK----------------L----SGGMKQRLALAQALLHDPELLILDEPTSGLDPES 130 (173)
T ss_pred cCCcHHHHhh----------------c----CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 1122222210 2 999999999999999 99999999 888888654
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=3e-21 Score=169.68 Aligned_cols=140 Identities=15% Similarity=0.021 Sum_probs=100.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------ 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------ 140 (275)
+..+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..++.++|+||++..+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEEecChhhccCCcHH
Confidence 44555666666789999999999999999999999999998 99999887765432 2346799999986321
Q ss_pred --HHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 --VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 --~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+...... ..........+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 165 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1111000 001111123334566666555445666666 999999999999999 89999999 999998754
No 221
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.84 E-value=3.8e-21 Score=161.22 Aligned_cols=113 Identities=23% Similarity=0.238 Sum_probs=89.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+ +
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~------~ 89 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELF------S 89 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccc------c
Confidence 3455555566789999999999999999999999999998 99999888776655556677899999975211 1
Q ss_pred ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+..+ .+ . |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 90 -~tv~~----------~l-------L----S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 90 -GSIAE----------NI-------L----SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred -CcHHH----------HC-------c----CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 11111 11 2 999999999999999 99999999 888988654
No 222
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.84 E-value=1e-20 Score=174.10 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=100.7
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHH----HhccccCchhHH-
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL----MRNGALPEERIR- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~- 139 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++| .|+|.+.+.++......+++ +.++|+||++..
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 456666667788999999999999999999999999987 49999999888766544432 369999999621
Q ss_pred ---------HHHhc--CCCccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 140 ---------AVETG--GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 140 ---------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
++... ........+....+.+.|+.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt 189 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11100 0001111222234455666655432 12445666 999999999999999 99999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 190 s~LD~~~ 196 (330)
T PRK09473 190 TALDVTV 196 (330)
T ss_pred ccCCHHH
Confidence 9998643
No 223
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.84 E-value=1.6e-20 Score=185.01 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=108.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +.+++.+.++..++|++++|+|+||||||||+++|+|+++|+ |+|.+++.++...+...+++.++|+
T Consensus 338 ~~v~~~y~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 338 RHITFEFAN---SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEECCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 677787876 445555666666889999999999999999999999999998 9999999888777777888899999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
+|++. +++.+ +.+..+..+ ...+.+ .+.++. ...+++..+.+ |+||+||++|||+|+ +|++
T Consensus 415 ~q~~~lf~~ti~~Ni~~-~~~~~~~~~-~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRL-GREGATDEE-VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred ccCCccCcccHHHHHhc-CCCCCCHHH-HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99973 23323 223222211 111111 122221 12234444444 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| |++++|...
T Consensus 493 lilDEpts~LD~~~ 506 (585)
T TIGR01192 493 LVLDEATSALDVET 506 (585)
T ss_pred EEEECCccCCCHHH
Confidence 9999 888988654
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1e-20 Score=183.23 Aligned_cols=143 Identities=15% Similarity=0.039 Sum_probs=104.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~------ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++.
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 345556666667889999999999999999999999999998 999998877654332 234567999999752
Q ss_pred --HHHHhcCCCc--c--chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCPH--A--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~~--~--~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... . ...+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 2222221110 0 1111223445567777665555666777 999999999999999 99999999 999998653
No 225
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.84 E-value=1.6e-20 Score=171.71 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=130.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
+.+++.|+|+.|||||||||.++.. ....+++++.|+++... |+++....+. ......+||.||+.+.++...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~-~~~~riaVi~NEfG~v~iD~~ll~~~~~-----~v~eL~~GCiCCs~~~~l~~~ 76 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT-----QIKTLTNGCICCSRSNELEDA 76 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc-ccCCcccccccCcCCccccHHHHhCcCc-----eEEEECCCEEEEccCchHHHH
Confidence 5689999999999999999999964 22368999999999764 5555543211 011236799999988877553
Q ss_pred HHHH-HHhhc-ccccccccccChhHHHHHHHHHHhc-----------CceEEEEeCCCCCCccc---cccccccccCEEE
Q 023913 159 LGPL-EELSN-LFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKIPR---KGGPGITQADLLV 222 (275)
Q Consensus 159 ~~~L-~~l~~-~~~~d~~~~eS~G~~q~~~laral~-----------~~~vlllD~t~g~d~~~---~~~~~i~~adiiv 222 (275)
+..+ ..+.. ...+|++++|+.|...+..++..+. +..|.++|+.++..... ....|+..||+||
T Consensus 77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv 156 (318)
T PRK11537 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_pred HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence 3333 22211 1268999999999988888776651 56899999887754432 2357899999999
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
+||+|+++. .+.+++.++.+||.++|+.++. .......+++.
T Consensus 157 lnK~Dl~~~----~~~~~~~l~~lnp~a~i~~~~~-~~v~~~~l~~~ 198 (318)
T PRK11537 157 LTKTDVAGE----AEKLRERLARINARAPVYTVVH-GDIDLSLLFNT 198 (318)
T ss_pred EeccccCCH----HHHHHHHHHHhCCCCEEEEecc-CCCCHHHHhCC
Confidence 999999975 2688899999999999998763 33455566554
No 226
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.84 E-value=1.6e-20 Score=162.87 Aligned_cols=147 Identities=14% Similarity=0.034 Sum_probs=96.3
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHHHHhc
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRN 130 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~~~~i 130 (275)
+-.|.|++ +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.+
T Consensus 5 ~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 5 NGYFSWGS---GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeEEecCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 44566665 445555666666789999999999999999999999999998 999988876543221 2234569
Q ss_pred cccCchhH-------HHHHhcCCCccchHHHHHHHHHHH--HH-hhcc-----ccccccccc-ChhHHHHHHHHHHhc-C
Q 023913 131 GALPEERI-------RAVETGGCPHAAIREDISINLGPL--EE-LSNL-----FKADLLLCE-SGGDNLAANFSRELA-D 193 (275)
Q Consensus 131 g~v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L--~~-l~~~-----~~~d~~~~e-S~G~~q~~~laral~-~ 193 (275)
+|++|++. +++.+. +.. . ........+.+ .. +... ...+..+.+ |+||+||++|||+++ +
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~-~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFG-SPF-N-KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred EEEcCCCccccccHHHHHhhc-CcC-C-HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999863 111111 111 1 11111111111 11 1100 012233445 999999999999999 8
Q ss_pred ceEEEEe-CCCCCCcc
Q 023913 194 YIIYIID-VSGGDKIP 208 (275)
Q Consensus 194 ~~vlllD-~t~g~d~~ 208 (275)
|.++|+| |++++|..
T Consensus 159 p~illlDEPt~~LD~~ 174 (218)
T cd03290 159 TNIVFLDDPFSALDIH 174 (218)
T ss_pred CCEEEEeCCccccCHH
Confidence 9999999 88888864
No 227
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=1.4e-20 Score=184.94 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=109.4
Q ss_pred ccccccCCCCCCCC-C-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcc
Q 023913 55 SHEPIYSPGYFSRR-A-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (275)
.++.|.||+ +. + .+.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.....+++.++
T Consensus 341 ~~v~f~y~~---~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 417 (576)
T TIGR02204 341 EQVNFAYPA---RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417 (576)
T ss_pred EEEEEECCC---CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce
Confidence 677888876 32 3 444555556789999999999999999999999999998 99999999988888888889999
Q ss_pred ccCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cc
Q 023913 132 ALPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DY 194 (275)
Q Consensus 132 ~v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~ 194 (275)
|+||++. +|+.+ +.+..+. +.+....+ .+.++.. ..+.+..+.| |+||+||+++||+++ +|
T Consensus 418 ~~~Q~~~lf~~Ti~~Ni~~-~~~~~~~-~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 418 LVPQDPVLFAASVMENIRY-GRPDATD-EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred EEccCCccccccHHHHHhc-CCCCCCH-HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 9999973 33323 2333322 12211111 1111111 2345555554 999999999999999 89
Q ss_pred eEEEEe-CCCCCCccc
Q 023913 195 IIYIID-VSGGDKIPR 209 (275)
Q Consensus 195 ~vlllD-~t~g~d~~~ 209 (275)
+++|+| ||+++|...
T Consensus 496 ~ililDEpts~lD~~~ 511 (576)
T TIGR02204 496 PILLLDEATSALDAES 511 (576)
T ss_pred CeEEEeCcccccCHHH
Confidence 999999 888888754
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.84 E-value=4.5e-21 Score=161.42 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=91.4
Q ss_pred ccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 57 EPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 57 ~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
..+.|++ .+ .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++
T Consensus 6 ~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~ 81 (178)
T cd03247 6 VSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLN 81 (178)
T ss_pred EEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEc
Confidence 3455554 22 3555566666789999999999999999999999999998 9999888765433 345567799999
Q ss_pred chhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 135 EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 135 q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
|++..+ + .+..+. + +.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus 82 q~~~~~------~-~tv~~~----------i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~ 133 (178)
T cd03247 82 QRPYLF------D-TTLRNN----------L---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133 (178)
T ss_pred cCCeee------c-ccHHHh----------h---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 875211 0 111111 1 233 999999999999999 99999999 888988654
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8e-21 Score=166.76 Aligned_cols=139 Identities=19% Similarity=0.106 Sum_probs=100.8
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--------H
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------A 140 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------~ 140 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... .++.++|++|++.. +
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence 455555566789999999999999999999999999998 999999987765433 24679999988521 1
Q ss_pred HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
+.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++++| |++++|....
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 165 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHH
Confidence 11110000 01111112334566666665556666667 999999999999999 99999999 9999987653
No 230
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-20 Score=158.07 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=88.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |++.+.+.++.......+++.++|++|++..+ .
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~------~ 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF------S 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc------c
Confidence 4555655666789999999999999999999999999998 99999887765544455667899999875211 0
Q ss_pred ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+..+ .+ . |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 90 -~t~~e----------~l-------L----S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~ 131 (171)
T cd03228 90 -GTIRE----------NI-------L----SGGQRQRIAIARALLRDPPILILDEATSALDPET 131 (171)
T ss_pred -chHHH----------Hh-------h----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 11111 11 2 999999999999999 99999999 888988643
No 231
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.5e-21 Score=168.38 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=101.0
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCCC--hHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEF 126 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~~--~~~~ 126 (275)
.++.+.|++ ..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.... ...+
T Consensus 9 ~~l~~~~~~----~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 9 KNLNLWYGS----KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeEEEEECC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 344455543 445556666668899999999999999999999999975 35 99999887654321 1245
Q ss_pred HHhccccCchhH-------HHHHhcCCCc--c-chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHh
Q 023913 127 LMRNGALPEERI-------RAVETGGCPH--A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSREL 191 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~~~~--~-~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral 191 (275)
++.++|+||++. +++.+..... . ........+.+.++.+.... ..+..+.+ |+||+||++|||+|
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 667999999852 1111110000 0 00111122334556554432 23344555 99999999999999
Q ss_pred c-CceEEEEe-CCCCCCcccc
Q 023913 192 A-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 192 ~-~~~vlllD-~t~g~d~~~~ 210 (275)
+ +|+++|+| |++++|...+
T Consensus 165 ~~~p~llllDEPt~~LD~~~~ 185 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVAT 185 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHH
Confidence 9 89999999 9999997543
No 232
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=3.2e-20 Score=199.54 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=112.3
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ +.+ ++.+.++..++|+.+||+|++|||||||+++|+++++|+ |+|.+++.|+.+.+..++++++++
T Consensus 1241 ~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130 1241 EDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred EEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEE
Confidence 788888876 444 455555566779999999999999999999999999998 999999999999888999999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +|+..+. . .+. +++..+.+ .+.++.. ..++|..+.| |+|||||++|||||+ +|+
T Consensus 1318 VpQdp~LF~GTIreNLd~~~-~-~td-eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1318 IPQAPVLFSGTVRFNLDPFN-E-HND-ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred ECCCCccccccHHHHhCcCC-C-CCH-HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 999984 2222221 1 121 12221111 2222221 3467777776 999999999999999 899
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+||| ||+.+|...
T Consensus 1395 ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1395 ILVLDEATAAVDVRT 1409 (1622)
T ss_pred EEEEECCCCCCCHHH
Confidence 99999 788888643
No 233
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.83 E-value=2.9e-20 Score=171.61 Aligned_cols=183 Identities=21% Similarity=0.228 Sum_probs=135.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhccccCchhHHHH-HhcCCCccchHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAV-ETGGCPHAAIREDIS 156 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~-~~~~~~~~~~~~~~~ 156 (275)
+-+++.|+|+.||||||||+.++.. +. .+++++.|+++..+ |+.+.+..+.......... ..+||.||+.+.++.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence 4679999999999999999999874 34 68999999999864 6666665332110001122 368999999988875
Q ss_pred HHHHHHHHhh-cccccccccccChhHHHHHHHHHHhc----------CceEEEEeCCCCCCc------------------
Q 023913 157 INLGPLEELS-NLFKADLLLCESGGDNLAANFSRELA----------DYIIYIIDVSGGDKI------------------ 207 (275)
Q Consensus 157 ~~~~~L~~l~-~~~~~d~~~~eS~G~~q~~~laral~----------~~~vlllD~t~g~d~------------------ 207 (275)
. .|..+. ....+|++++|++|...+..++..+. +..|.++|+.++...
T Consensus 81 ~---~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~ 157 (341)
T TIGR02475 81 P---TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDN 157 (341)
T ss_pred H---HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccc
Confidence 5 444443 24579999999999998888887762 568899998755310
Q ss_pred -------cccccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCC-CCEEEEEecCCcCHHHHhccc
Q 023913 208 -------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG-GPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 208 -------~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~-~~ii~~S~~~~~g~~~l~~~~ 270 (275)
......|+++||+||+||+|+++. ++++.+++.++++||. ++|+.++. .......|++..
T Consensus 158 ~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~~l~~~~~~l~~~~~~~a~i~~~~~-~~v~~~~ll~~~ 225 (341)
T TIGR02475 158 LDHETPLEELFEDQLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASH-GEVDARVLLGLG 225 (341)
T ss_pred ccccchHHHHHHHHHHhCCEEEEeccccCCH--HHHHHHHHHHHHhCCCCCEEEEccc-CCCCHHHHhCCC
Confidence 011247899999999999999988 7899999999998885 57887653 445677777653
No 234
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=167.35 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=97.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC--CChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~ 138 (275)
...++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.. .....+++.++|++|++.
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 34556566666788999999999999999999999999863 4 999998877643 223355677999999852
Q ss_pred -------HHHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.+...... ...+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11211111110 0011112223344444332 123455556 999999999999999 99999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 184 ~~LD~~~ 190 (259)
T PRK14274 184 SALDPVS 190 (259)
T ss_pred ccCCHHH
Confidence 9998754
No 235
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=1.6e-20 Score=184.52 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=109.0
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ .. .++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus 317 ~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 393 (569)
T PRK10789 317 NIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393 (569)
T ss_pred EEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence 667788875 33 4555555666889999999999999999999999999998 999999998887777788889999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
++|++. +++.+ +.+..+.. .+..+.+ .+..+. ...+++..+.+ |+||+||+++||+++ +|+
T Consensus 394 v~q~~~lf~~ti~~Ni~~-~~~~~~~~-~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 394 VSQTPFLFSDTVANNIAL-GRPDATQQ-EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EccCCeeccccHHHHHhc-CCCCCCHH-HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999973 22222 22322221 1211111 122111 22345555544 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
++|+| |++++|...
T Consensus 472 illlDEpts~LD~~~ 486 (569)
T PRK10789 472 ILILDDALSAVDGRT 486 (569)
T ss_pred EEEEECccccCCHHH
Confidence 99999 888988654
No 236
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=167.97 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=98.7
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCc
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPE 135 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q 135 (275)
+|++..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+++.++|++|
T Consensus 17 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 96 (261)
T PRK14263 17 FYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ 96 (261)
T ss_pred EeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEec
Confidence 34445556666666788999999999999999999999999976 5 9999998876532 22345667999999
Q ss_pred hhHH-------HHHhcCCCccchHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 136 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
++.. ++.++.............+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus 97 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (261)
T PRK14263 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP 176 (261)
T ss_pred CCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8631 111111000000111122334455443321 12333444 999999999999999 99999999 9
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 177 tsgLD~~~ 184 (261)
T PRK14263 177 CSALDPIA 184 (261)
T ss_pred CccCCHHH
Confidence 99998754
No 237
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.83 E-value=1.2e-20 Score=164.95 Aligned_cols=136 Identities=13% Similarity=-0.008 Sum_probs=94.4
Q ss_pred cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----C-CcEEEEeccCCCCChHHHHHhccccCchhHH--HHHhc
Q 023913 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--AVETG 144 (275)
Q Consensus 72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--~~~~~ 144 (275)
.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+.++|++|++.. +..+.
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcccC
Confidence 344555678999999999999999999999999998 7 9999988776432 1223579999998631 10010
Q ss_pred C-------CC-ccc-hHHHHHHHHHHHHHhhcc---ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 145 G-------CP-HAA-IREDISINLGPLEELSNL---FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 145 ~-------~~-~~~-~~~~~~~~~~~L~~l~~~---~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
. +. ... .......+.+.++.+... ...+..+.+ |+||+||++|||+++ +|+|+|+| |++++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 0 00 000 111122344456666544 234555556 999999999999999 89999999 899999754
No 238
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.3e-20 Score=168.42 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=100.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEF 126 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~ 126 (275)
.+..+.|+ +..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++... ....+
T Consensus 25 ~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (268)
T PRK14248 25 KDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100 (268)
T ss_pred EEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence 44445453 3455666666678899999999999999999999999864 56 9999988776532 22345
Q ss_pred HHhccccCchhH-------HHHHhcCCCccc-hHH-HHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913 127 LMRNGALPEERI-------RAVETGGCPHAA-IRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA 192 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~~~~~~-~~~-~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~ 192 (275)
++.++|++|++. +++.+....... ... ....+...+..+... ...+..+.+ |+||+||++|||+|+
T Consensus 101 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~ 180 (268)
T PRK14248 101 RREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA 180 (268)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 667999999852 112111000000 000 011122344444321 123445555 999999999999999
Q ss_pred -CceEEEEe-CCCCCCcccc
Q 023913 193 -DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 193 -~~~vlllD-~t~g~d~~~~ 210 (275)
+|+++|+| |++++|....
T Consensus 181 ~~p~lllLDEPt~~LD~~~~ 200 (268)
T PRK14248 181 MKPAVLLLDEPASALDPISN 200 (268)
T ss_pred CCCCEEEEcCCCcccCHHHH
Confidence 99999999 9999987543
No 239
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.6e-20 Score=175.36 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=117.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
+|++|.|.. ++.++.++++...+|..++|+||+|+||||++++|..++.-+ |.|.+++.|+.......+++.||+|
T Consensus 541 snvtF~Y~p---~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 541 SNVTFAYDP---GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred EEeEEecCC---CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 899999987 677777777788899999999999999999999999999977 9999999999887788899999999
Q ss_pred CchhHHHHHh------cCCCccchHHHH-----HHHHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERIRAVET------GGCPHAAIREDI-----SINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~~~~~~------~~~~~~~~~~~~-----~~~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
|||...++.+ .+.+..+..+-. +.+.+.+- ...+++...++| |||++||+++||+++ +|.+
T Consensus 618 PQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl--~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 618 PQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRIL--QFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHh--cCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 9997533321 133333332221 22222222 234567777777 999999999999999 8999
Q ss_pred EEEe-CCCCCCcccc
Q 023913 197 YIID-VSGGDKIPRK 210 (275)
Q Consensus 197 lllD-~t~g~d~~~~ 210 (275)
++|| +|+.+|....
T Consensus 696 IlLDEATSALDT~tE 710 (790)
T KOG0056|consen 696 ILLDEATSALDTNTE 710 (790)
T ss_pred EEEcchhhhcCCccH
Confidence 9999 7777887643
No 240
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=8.1e-21 Score=157.89 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=86.0
Q ss_pred ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccC
Q 023913 57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALP 134 (275)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~ 134 (275)
..+.|++ +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......+ +++.++|++
T Consensus 6 l~~~~~~----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 81 (163)
T cd03216 6 ITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY 81 (163)
T ss_pred EEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence 3455544 34555666667889999999999999999999999999998 99999887776544322 344577766
Q ss_pred chhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 135 EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 135 q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
| . |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 82 q-------------------------------------L----S~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 82 Q-------------------------------------L----SVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred e-------------------------------------c----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 5 2 999999999999999 99999999 888888643
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=2e-20 Score=181.18 Aligned_cols=143 Identities=15% Similarity=0.014 Sum_probs=101.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHH-HHHhccccCchhH----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI---- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~---- 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++....... .++.+||+||++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 44555566666788999999999999999999999999986 5 99999888776544333 3356999999852
Q ss_pred ----HHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccc-cccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 ----RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 ----~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~-d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+++.+..... .........+.+.++.+...... ++.+.+ |+||+||++||++|+ +|+++|+| |++++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2222221110 11111223345567776654433 455666 999999999999999 99999999 99999
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|...
T Consensus 173 D~~~ 176 (500)
T TIGR02633 173 TEKE 176 (500)
T ss_pred CHHH
Confidence 8653
No 242
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7.3e-21 Score=159.52 Aligned_cols=146 Identities=19% Similarity=0.125 Sum_probs=104.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
++..+.|++.+ +.++.+.+....+|+.++++||+|||||||||+++|+..|. |+|.+++..+.... ..-|+|
T Consensus 7 ~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergvV 79 (259)
T COG4525 7 SHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVV 79 (259)
T ss_pred hheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccceeE
Confidence 56678888844 34555666667789999999999999999999999999998 99999887765421 124778
Q ss_pred CchhH--------HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 134 PEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
||+.. .|+.++..... .-.+....+.+.+..+++....+..+.+ ||||+||+.+||||+ +|.++++| |
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 88762 34444422211 1112223344456666666655666667 999999999999999 99999999 5
Q ss_pred CCCCCc
Q 023913 202 SGGDKI 207 (275)
Q Consensus 202 t~g~d~ 207 (275)
...+|.
T Consensus 160 fgAlDa 165 (259)
T COG4525 160 FGALDA 165 (259)
T ss_pred hhhHHH
Confidence 555554
No 243
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=180.59 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=103.0
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchh---------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER--------- 137 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~--------- 137 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.+||++|++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 3555666667889999999999999999999999999998 999998877654333 23456799999972
Q ss_pred --HHHHHhcCCC-----cc-----chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 138 --IRAVETGGCP-----HA-----AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 138 --~~~~~~~~~~-----~~-----~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
.+++.+.... .. ........+.+.++.+... ...++.+.+ |+||+||+.|||+|+ +|.|+|+| |
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 1222221110 00 0111123345577777664 456777777 999999999999999 89999999 9
Q ss_pred CCCCCcccc
Q 023913 202 SGGDKIPRK 210 (275)
Q Consensus 202 t~g~d~~~~ 210 (275)
++++|...+
T Consensus 437 t~~LD~~~~ 445 (510)
T PRK09700 437 TRGIDVGAK 445 (510)
T ss_pred CCCcCHHHH
Confidence 999997653
No 244
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=4.8e-20 Score=172.63 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=112.3
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~--- 138 (275)
+|++-.+..++++...+|++.+|+|.||||||||+++|.|+++|+ |+|.++|.+..-.++.+. +..||+|.|.+.
T Consensus 13 ~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 13 RFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred EcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567677777888888999999999999999999999999999999 999999998876666554 446999999874
Q ss_pred -----HHHHhcCCCc----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 -----RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 -----~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+|+.++.... ...++..+++.+..++++..-.++..+.+ |.|++||+.|.++|. ++.++||| ||+-+-
T Consensus 93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLT 172 (501)
T COG3845 93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLT 172 (501)
T ss_pred ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 4444544332 22233334455566667777778888888 999999999999999 99999999 544443
No 245
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=5.9e-21 Score=171.52 Aligned_cols=150 Identities=16% Similarity=0.084 Sum_probs=101.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
.+..+.|++ +...++.+.++...+|++++|+|+||||||||+++|+|++++.|+|.+.+.++.......+++.++|+|
T Consensus 6 ~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 83 (275)
T cd03289 6 KDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIP 83 (275)
T ss_pred EEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence 345566653 123345555556678999999999999999999999999984499999998887666677888999999
Q ss_pred chhHHHHH---hcCCCcc-chHHHHHHHHHHHHHhhccc-------cccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 135 EERIRAVE---TGGCPHA-AIREDISINLGPLEELSNLF-------KADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 135 q~~~~~~~---~~~~~~~-~~~~~~~~~~~~L~~l~~~~-------~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
|++..+.. -+..+.. ...+. +.+.++.+.... .++..+.| |+||+||++|||+++ +|+|+
T Consensus 84 q~~~lf~~tv~~nl~~~~~~~~~~---~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 84 QKVFIFSGTFRKNLDPYGKWSDEE---IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred CCcccchhhHHHHhhhccCCCHHH---HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 98742211 0011111 11111 122333332221 22222222 999999999999999 99999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
|+| |++++|...
T Consensus 161 llDEpts~LD~~~ 173 (275)
T cd03289 161 LLDEPSAHLDPIT 173 (275)
T ss_pred EEECccccCCHHH
Confidence 999 899988653
No 246
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.83 E-value=1.8e-20 Score=165.49 Aligned_cols=193 Identities=21% Similarity=0.238 Sum_probs=147.2
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCCh--HHHHHh--ccccCchhHHHHH-hc
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED--GEFLMR--NGALPEERIRAVE-TG 144 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~--~~~~~~--ig~v~q~~~~~~~-~~ 144 (275)
.+...+....+.++..|+|+.|||||||||.|+.- +...+|+++-|+++...+ ..+... .|-+. .+.++ -+
T Consensus 46 ~~~~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~-~hgKRIAVIlNEfGes~die~sl~~~~~gg~ly---Eewv~L~N 121 (391)
T KOG2743|consen 46 DVVTKSSLGARIPVTIITGYLGAGKTTLLNYILTG-QHGKRIAVILNEFGESSDIEKSLAVSQEGGELY---EEWVELRN 121 (391)
T ss_pred ccccccCCCCccceEEEEecccCChHHHHHHHHcc-CCCceEEEEhhhcccchhhhHHHHhccccchHH---HHHHHhcC
Confidence 55566677788999999999999999999999864 233689999999997432 222221 12111 12333 57
Q ss_pred CCCccchHHHHHHHHHHHHHhh-cccccccccccChhHHHHHHHHHHh-----------cCceEEEEeCCCCCCcc----
Q 023913 145 GCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIP---- 208 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~eS~G~~q~~~laral-----------~~~~vlllD~t~g~d~~---- 208 (275)
||.||+.+.+..+ +++.+. .+.++|.+++|+.|.+-++++|..| +|..|.++|+...+...
T Consensus 122 GClCCtVk~~gvr---aie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k 198 (391)
T KOG2743|consen 122 GCLCCTVKDNGVR---AIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEK 198 (391)
T ss_pred CeEEEEecchHHH---HHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccC
Confidence 9999999887755 444443 4558999999999999999999875 26789999986653221
Q ss_pred -c----cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913 209 -R----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 272 (275)
Q Consensus 209 -~----~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~ 272 (275)
. ....|+.+||.|++||+||+++ +++.++++.++.+|.-++++++. .....+..++++.+|
T Consensus 199 ~~g~i~EA~~QiA~AD~II~NKtDli~~--e~~~~l~q~I~~INslA~m~~Tk-y~~vdlsnvLdi~ay 264 (391)
T KOG2743|consen 199 PDGLINEATRQIALADRIIMNKTDLVSE--EEVKKLRQRIRSINSLAQMIETK-YSRVDLSNVLDIHAF 264 (391)
T ss_pred cccchHHHHHHHhhhheeeeccccccCH--HHHHHHHHHHHHhhhHHHhhhhh-hccccHHHhcccccc
Confidence 1 1246899999999999999999 89999999999999999999875 456679999998877
No 247
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=167.00 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=95.0
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.. .....+++.++|++|++.
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 3445556666668899999999999999999999999876 36 999998876642 223455678999999752
Q ss_pred -------HHHHhcCCCccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913 139 -------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (275)
Q Consensus 139 -------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g 204 (275)
+++.+..................++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |+++
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 111111110000001111122233332221 123444555 999999999999999 99999999 8999
Q ss_pred CCccc
Q 023913 205 DKIPR 209 (275)
Q Consensus 205 ~d~~~ 209 (275)
+|...
T Consensus 182 LD~~~ 186 (264)
T PRK14243 182 LDPIS 186 (264)
T ss_pred CCHHH
Confidence 98754
No 248
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.1e-20 Score=170.60 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=100.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEF 126 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~ 126 (275)
.+..+.|+ +..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++... ....+
T Consensus 43 ~~l~~~~~----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 43 RDLNVFYG----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEC----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 34444443 3445555556667899999999999999999999999986 56 9999988776432 23345
Q ss_pred HHhccccCchhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-C
Q 023913 127 LMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-D 193 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~ 193 (275)
++.++|++|++. +++.+..............+.+.++.+... ...+..+.+ |+||+||++|||+|+ +
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred hccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 678999999852 111111000000001112233345444331 123445556 999999999999999 9
Q ss_pred ceEEEEe-CCCCCCccc
Q 023913 194 YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 194 ~~vlllD-~t~g~d~~~ 209 (275)
|+|+|+| |++++|...
T Consensus 199 p~lLLLDEPts~LD~~~ 215 (285)
T PRK14254 199 PEVILMDEPASALDPVA 215 (285)
T ss_pred CCEEEEeCCCCCCCHHH
Confidence 9999999 999999754
No 249
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.83 E-value=3.2e-20 Score=166.15 Aligned_cols=140 Identities=16% Similarity=0.041 Sum_probs=98.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhHHH----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIRA---- 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~~---- 140 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++...
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 3555555666889999999999999999999999999998 999998887765433 23566899999985210
Q ss_pred ------HHhcCC--CccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 141 ------VETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 141 ------~~~~~~--~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+..... ...........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|.|+|+| |++++|..
T Consensus 106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 000000 0000111112334455555443 234555556 999999999999999 99999999 89999864
No 250
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=9.4e-21 Score=163.03 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=92.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE----- 142 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~----- 142 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+..
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 3455555556789999999999999999999999999998 9999988877555555667789999998621100
Q ss_pred hcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+... ..... ....+.++ .+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 102 l~~~-~~~~~---~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 102 LDPF-DEYSD---EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred hccc-CCCCH---HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 0000 00000 11111222 2333444 999999999999999 99999999 898988654
No 251
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=2.9e-20 Score=182.16 Aligned_cols=154 Identities=11% Similarity=-0.046 Sum_probs=108.8
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++.-..+ .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++.+.+..++++.++|
T Consensus 341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 420 (555)
T TIGR01194 341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA 420 (555)
T ss_pred EEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcE
Confidence 67788887610012 3555555666889999999999999999999999999998 999999999988777788889999
Q ss_pred cCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcc-------cccccccccChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 133 LPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 133 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-------~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
++|++..+..+-... ...........+.++.+... .+++....-|+||+||++|||+++ +|+|+|+| |++
T Consensus 421 v~q~~~lf~~ti~~n-~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts 499 (555)
T TIGR01194 421 IFADFHLFDDLIGPD-EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499 (555)
T ss_pred EccChhhhhhhhhcc-cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999975433322111 11001112222344433222 223332122999999999999999 99999999 888
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 500 ~LD~~~ 505 (555)
T TIGR01194 500 DQDPAF 505 (555)
T ss_pred CCCHHH
Confidence 888654
No 252
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=5.6e-21 Score=163.08 Aligned_cols=133 Identities=11% Similarity=-0.032 Sum_probs=92.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (275)
+.+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... .+.++|++|++. +
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 14 KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred cEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHH
Confidence 3455655556789999999999999999999999999998 99999887764321 245788887641 1
Q ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+..... .....+...++.+......+..+.+ |+||+||+.+||+++ +|+++|+| |++++|...
T Consensus 90 ~l~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~ 158 (195)
T PRK13541 90 NLKFWSEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158 (195)
T ss_pred HHHHHHHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111110000 0111223344555444444555556 999999999999999 89999999 888988654
No 253
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=165.19 Aligned_cols=142 Identities=16% Similarity=0.070 Sum_probs=97.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+++.++|+||++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 4455566666688999999999999999999999999874 5 9999988877532 22345677999999863
Q ss_pred ------HHHHhcCCCc-c-chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~-~-~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... . ........+.+.++.+... ...+..+.+ |+||+||++|||+++ +|+|+|+| |++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 176 (251)
T PRK14270 97 FPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176 (251)
T ss_pred CCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2221111000 0 0111112223345544321 123445556 999999999999999 99999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 177 ~LD~~~ 182 (251)
T PRK14270 177 ALDPIS 182 (251)
T ss_pred cCCHHH
Confidence 998754
No 254
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.3e-20 Score=165.95 Aligned_cols=163 Identities=14% Similarity=0.029 Sum_probs=106.5
Q ss_pred CccccCCCCCCC---ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEE
Q 023913 43 RVYHSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAA 113 (275)
Q Consensus 43 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i 113 (275)
++.++.+..... .+..+.|+ ++.++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 9 RHIITFPEEEIALSTKDLHVYYG----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred ceeEecCCCCeEEEEeeEEEEEC----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 344444444333 44455553 4556666666678899999999999999999999999986 46 99999
Q ss_pred EeccCCCC--ChHHHHHhccccCchhH-------HHHHhcCCCc-cchHHH-HHHHHHHHHHhhcc----ccccccccc-
Q 023913 114 VTNDIFTK--EDGEFLMRNGALPEERI-------RAVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE- 177 (275)
Q Consensus 114 ~~~d~~~~--~~~~~~~~ig~v~q~~~-------~~~~~~~~~~-~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e- 177 (275)
.+.++... ....+++.++|++|++. +++.++.... ...... ...+.+.++.+... ...+..+.+
T Consensus 85 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L 164 (267)
T PRK14237 85 RGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL 164 (267)
T ss_pred CCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC
Confidence 88776432 23345667999999852 1221110000 000111 12223344444332 123455556
Q ss_pred ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
|+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPIS 198 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 999999999999999 89999999 999998754
No 255
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.4e-20 Score=165.00 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=97.8
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe------ccCCCCChHHHHHhccccCchh
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~------~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
|+++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+ .++.......+++.++|++|++
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~ 99 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence 44555666666667889999999999999999999999999987 8776554 3333333445667899999986
Q ss_pred H--------HHHHhcCCCc-cchHHHH-HHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 138 I--------RAVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 138 ~--------~~~~~~~~~~-~~~~~~~-~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
. +++.+..... ....... ..+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE 179 (257)
T PRK14246 100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE 179 (257)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3 1111111000 0001111 2233455555432 123445555 999999999999999 89999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 180 Pt~~LD~~~ 188 (257)
T PRK14246 180 PTSMIDIVN 188 (257)
T ss_pred CCccCCHHH
Confidence 999998754
No 256
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=4e-20 Score=198.21 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=111.6
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ +. .++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.|+.+.+..++++++++
T Consensus 1238 ~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~i 1314 (1495)
T PLN03232 1238 EDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 (1495)
T ss_pred EEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEE
Confidence 778888865 43 4555555666789999999999999999999999999998 999999999998888899999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +|+..+. ..+. +++..+.+ .+.++.. ..++|..+.| |+|||||++|||||+ +|+
T Consensus 1315 VpQdp~LF~gTIr~NL~~~~--~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1315 IPQSPVLFSGTVRFNIDPFS--EHND-ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred ECCCCeeeCccHHHHcCCCC--CCCH-HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 999983 2222221 1221 12211111 2222221 3466777766 999999999999999 899
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+||| ||+.+|...
T Consensus 1392 ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1392 ILVLDEATASVDVRT 1406 (1495)
T ss_pred EEEEECCcccCCHHH
Confidence 99999 788888643
No 257
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=165.30 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=96.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--C---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++ | + |+|.+.+.++... ....+++.++|+||++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 445666666668899999999999999999999999985 3 5 9999988776432 22345667999999852
Q ss_pred -------HHHHhcCCCcc--chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGCPHA--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.+...... ...+....+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 176 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 12211110100 11111122334455544321 23344555 999999999999999 89999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 177 ~gLD~~~ 183 (252)
T PRK14256 177 SALDPIS 183 (252)
T ss_pred ccCCHHH
Confidence 9998754
No 258
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.1e-20 Score=166.78 Aligned_cols=143 Identities=12% Similarity=0.023 Sum_probs=94.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|++++ + |+|.+.+.++... ....+++.++|++|++.
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 34455566666688999999999999999999999999752 4 9999988776432 22345678999999852
Q ss_pred -------HHHHhcCCCccchHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913 139 -------RAVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (275)
Q Consensus 139 -------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g 204 (275)
+++.+..................++.+.. ....+..+.+ |+||+||++|||+|+ +|+++|+| |+++
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 11111110000000001111223333322 1223444555 999999999999999 99999999 9999
Q ss_pred CCccc
Q 023913 205 DKIPR 209 (275)
Q Consensus 205 ~d~~~ 209 (275)
+|...
T Consensus 192 LD~~~ 196 (274)
T PRK14265 192 LDPIS 196 (274)
T ss_pred CCHHH
Confidence 98754
No 259
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.7e-20 Score=166.84 Aligned_cols=143 Identities=15% Similarity=0.060 Sum_probs=96.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++.. .....+++.++|++|++.
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 455556666668899999999999999999999999987 57 999998877642 223455678999999853
Q ss_pred ------HHHHhcCCC-ccchHHH-HHHHHHHHHHhh----ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCP-HAAIRED-ISINLGPLEELS----NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~-~~~~~~~-~~~~~~~L~~l~----~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++... ....... ...+.+.++.+. .....+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 117 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~ 196 (271)
T PRK14238 117 FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTS 196 (271)
T ss_pred ccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 222211000 0000111 111222333321 11223445555 999999999999999 89999999 999
Q ss_pred CCCcccc
Q 023913 204 GDKIPRK 210 (275)
Q Consensus 204 g~d~~~~ 210 (275)
++|...+
T Consensus 197 ~LD~~~~ 203 (271)
T PRK14238 197 ALDPIST 203 (271)
T ss_pred cCCHHHH
Confidence 9997653
No 260
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.1e-20 Score=164.24 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=98.9
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHH
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFL 127 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~ 127 (275)
++.+.|++ ..++.+.++...+|++++|+|+||||||||+++|+|++++ + |+|.+.+.++... ....++
T Consensus 8 ~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 8 DLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 34445543 4455566666678999999999999999999999998762 5 9999998876531 233456
Q ss_pred HhccccCchhH-------HHHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-
Q 023913 128 MRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA- 192 (275)
Q Consensus 128 ~~ig~v~q~~~-------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~- 192 (275)
+.++|++|++. +++.++..... ........+.+.++.+... ...+..+.+ |+||+||++|||+|+
T Consensus 84 ~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 84 KRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 67999999852 11111100000 0001112222334443221 123444555 999999999999999
Q ss_pred CceEEEEe-CCCCCCccc
Q 023913 193 DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 ~~~vlllD-~t~g~d~~~ 209 (275)
+|+++|+| |++++|...
T Consensus 164 ~p~llllDEP~~~LD~~~ 181 (250)
T PRK14240 164 EPEVLLMDEPTSALDPIS 181 (250)
T ss_pred CCCEEEEeCCCccCCHHH
Confidence 99999999 999998754
No 261
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3.9e-20 Score=179.35 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=102.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-CC-CcEEEEeccCCCCCh-HHHHHhccccCchhH------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------ 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~------ 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++..... ..+++.++|++|++.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 345556666678899999999999999999999999998 46 999998877643332 234456999999841
Q ss_pred -----HHHHhcCC--Ccc----chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 -----RAVETGGC--PHA----AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 -----~~~~~~~~--~~~----~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++.. .+. ........+.+.++.+... ...++.+.+ |+||+||+.|||+|+ +|.++||| |++
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 11211110 000 1111223345577777664 345677777 999999999999999 99999999 999
Q ss_pred CCCcccc
Q 023913 204 GDKIPRK 210 (275)
Q Consensus 204 g~d~~~~ 210 (275)
++|...+
T Consensus 435 ~LD~~~~ 441 (506)
T PRK13549 435 GIDVGAK 441 (506)
T ss_pred CcCHhHH
Confidence 9998654
No 262
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=166.55 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=101.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCC-hHHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGEFL 127 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~-~~~~~ 127 (275)
.++.+.|+ ++.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.... ...++
T Consensus 25 ~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 25 VNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred eeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 44445554 34555666666788999999999999999999999999885 5 99999887765432 23456
Q ss_pred HhccccCchhH-------HHHHhcCCCc--cchHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-
Q 023913 128 MRNGALPEERI-------RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA- 192 (275)
Q Consensus 128 ~~ig~v~q~~~-------~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~- 192 (275)
+.++|++|++. +++.+..... ....+....+.+.++.+.... ..+..+.+ |+||+||++|||+|+
T Consensus 101 ~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~ 180 (276)
T PRK14271 101 RRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV 180 (276)
T ss_pred hheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 78999999852 1222111000 111111112223444443321 12344455 999999999999999
Q ss_pred CceEEEEe-CCCCCCccc
Q 023913 193 DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 ~~~vlllD-~t~g~d~~~ 209 (275)
+|+|+|+| |++++|...
T Consensus 181 ~p~lllLDEPt~~LD~~~ 198 (276)
T PRK14271 181 NPEVLLLDEPTSALDPTT 198 (276)
T ss_pred CCCEEEEcCCcccCCHHH
Confidence 89999999 999998754
No 263
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.82 E-value=4.2e-20 Score=163.04 Aligned_cols=142 Identities=14% Similarity=0.014 Sum_probs=95.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHH-HhccccCchhHHH---
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIRA--- 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~~--- 140 (275)
..++.+.++...+|++++|+|+||||||||+++|+|++ +|+ |+|.+.+.++...++...+ +.++|++|++..+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 44555666666789999999999999999999999995 577 9999998877654444443 4689999986311
Q ss_pred -----HHhcCCC---ccc---hH-HH-HHHHHHHHHHhhcc-cccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 141 -----VETGGCP---HAA---IR-ED-ISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 141 -----~~~~~~~---~~~---~~-~~-~~~~~~~L~~l~~~-~~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
....... ... .. .. ...+.+.++.+... ...+..+. + |+||+||++|||+++ +|+++|+| |+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1000000 000 00 01 11222344444332 22333343 4 999999999999999 89999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 174 ~~LD~~~ 180 (248)
T PRK09580 174 SGLDIDA 180 (248)
T ss_pred ccCCHHH
Confidence 9998754
No 264
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=3e-20 Score=157.03 Aligned_cols=121 Identities=24% Similarity=0.250 Sum_probs=88.9
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchhHHHHHhcCCC
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....+ ..+++.++|++|++... ...+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE---GLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC---cccC
Confidence 445555556789999999999999999999999999998 999999887765543 33456799999874200 0111
Q ss_pred ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..+..+.+.... .. |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 92 ~~t~~e~l~~~~------------~L----S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 139 (182)
T cd03215 92 DLSVAENIALSS------------LL----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139 (182)
T ss_pred CCcHHHHHHHHh------------hc----CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH
Confidence 223332221100 03 999999999999999 99999999 888888654
No 265
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.8e-20 Score=163.62 Aligned_cols=143 Identities=14% Similarity=0.097 Sum_probs=96.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC-CChHHHHHhccccCchhH-
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~-~~~~~~~~~ig~v~q~~~- 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.. .....+++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 34456666666788999999999999999999999999885 4 999998877642 234456678999999853
Q ss_pred ------HHHHhcCCCc-cchHHHH-HHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~-~~~~~~~-~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... ....... ..+.+.++.+... ...+..+.+ |+||+||+.|||+|+ +|+|+|+| |++
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 1111110000 0001111 1222233333221 223444555 999999999999999 89999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 175 ~LD~~~ 180 (249)
T PRK14253 175 ALDPIA 180 (249)
T ss_pred cCCHHH
Confidence 998754
No 266
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-20 Score=167.84 Aligned_cols=142 Identities=16% Similarity=0.044 Sum_probs=95.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC--CChHHHHHhccccCchhHH
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~ 139 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.. .....+++.++|++|++..
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4455566666688999999999999999999999999874 4 999998877643 1223456689999998631
Q ss_pred -------HHHhcCCCcc--chHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 140 -------AVETGGCPHA--AIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 140 -------~~~~~~~~~~--~~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
++.+...... ........+.+.++.+.. ....+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 179 (259)
T PRK14260 100 FPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 (259)
T ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111100000 000111122334444432 1234455556 999999999999999 99999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 180 ~LD~~~ 185 (259)
T PRK14260 180 ALDPIA 185 (259)
T ss_pred cCCHHH
Confidence 998754
No 267
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4e-20 Score=163.65 Aligned_cols=142 Identities=15% Similarity=0.043 Sum_probs=95.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++... ....+++.++|++|++.
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 445555666667899999999999999999999999986 35 9999988776432 22345667999999852
Q ss_pred ------HHHHhcCCC-ccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCP-HAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~-~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+.... .....+. ...+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~ 176 (251)
T PRK14251 97 FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 (251)
T ss_pred CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 112111000 0000111 11223344444331 223445555 999999999999999 99999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 177 ~LD~~~ 182 (251)
T PRK14251 177 ALDPIS 182 (251)
T ss_pred cCCHHH
Confidence 998754
No 268
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=7.8e-21 Score=168.18 Aligned_cols=116 Identities=20% Similarity=0.163 Sum_probs=82.5
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCCcc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA 149 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~~~ 149 (275)
.+|++++|+|+||||||||+++|+|+++|+ |+|.+.+. .++|++|+.. +++........
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 90 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFY 90 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhcc
Confidence 469999999999999999999999999998 99887652 4677777642 11111000000
Q ss_pred chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
. ......+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 91 ~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 91 T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 0 001123345555554445666666 999999999999999 99999999 899998754
No 269
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.82 E-value=6.4e-20 Score=159.85 Aligned_cols=127 Identities=22% Similarity=0.252 Sum_probs=92.6
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH----------HHHhcCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR----------AVETGGC 146 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~----------~~~~~~~ 146 (275)
..+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++. ..++.++|++|++.. ++..+..
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 3579999999999999999999999999998 99999886642 234679999997521 1112111
Q ss_pred Cc-----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~-----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.. .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 00 00011122344566666665555666666 999999999999999 99999999 999998754
No 270
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.82 E-value=2.8e-20 Score=159.49 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=88.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHHH-HhccccCchhHHHHHh
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIRAVET 143 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~~~~~ 143 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+ ++|+ |+|.+++.++......... ..++|++|++..+
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~--- 89 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI--- 89 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc---
Confidence 3445555556678999999999999999999999999 4677 9999999887765544433 3599999985321
Q ss_pred cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+..+..+ .+ +....+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 90 ---~~~~~~~-------~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 90 ---PGVKNAD-------FL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred ---cCccHHH-------HH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 1111111 11 111123 999999999999999 99999999 899998654
No 271
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=163.86 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=95.8
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++... ....+++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 34455566666678999999999999999999999999873 6 9999988776432 12345667999999853
Q ss_pred -------HHHHhcCCCc-cchH-HHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGCPH-AAIR-EDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~~~-~~~~-~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.+..... .... .....+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 1111110000 0000 11111223344433221 23445555 999999999999999 89999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 175 ~~LD~~~ 181 (250)
T PRK14262 175 SALDPIA 181 (250)
T ss_pred cccCHHH
Confidence 9998754
No 272
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=7.5e-21 Score=168.75 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=91.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh--c
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET--G 144 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~--~ 144 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+ ...++|++|++.....+ +
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccccccChh
Confidence 44555666666789999999999999999999999999998 9988753 13588888875211000 0
Q ss_pred CCCcc--chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 145 GCPHA--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 145 ~~~~~--~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..... ........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 155 (251)
T PRK09544 86 VNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG 155 (251)
T ss_pred HHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 00000 0000012233456666555445666666 999999999999999 89999999 899998654
No 273
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.82 E-value=2.9e-20 Score=162.18 Aligned_cols=141 Identities=17% Similarity=-0.019 Sum_probs=94.8
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-HHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAV 141 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~~ 141 (275)
+|++..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+.... ....++.+.... +++
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~~~~~~tv~enl 105 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGGFNPELTGRENI 105 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccccCCCCCcHHHHH
Confidence 455566666666677889999999999999999999999999998 9999887654311 112333333222 222
Q ss_pred HhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+..... ...........+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 106 YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2211000 11111112233455555555555666677 999999999999999 89999999 899998653
No 274
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.6e-20 Score=163.90 Aligned_cols=143 Identities=15% Similarity=0.050 Sum_probs=96.5
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc---cCC--C-CcEEEEeccCCCCC--hHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF---LRD--K-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~---l~~--~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~ 138 (275)
+..++.+.++...+|++++|+|+||||||||+++|+|+ ++| + |+|.+.+.++.... ...+++.++|+||++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 34455566666688999999999999999999999996 454 4 99999988775421 2355667999999852
Q ss_pred -------HHHHhcCCCcc-chHH-HHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGCPHA-AIRE-DISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~~~~-~~~~-~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.++..... ...+ ....+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11111100000 0011 1122334555554321 23444555 999999999999999 99999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 175 ~~LD~~~ 181 (250)
T PRK14245 175 SALDPIS 181 (250)
T ss_pred ccCCHHH
Confidence 9998754
No 275
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.9e-20 Score=163.75 Aligned_cols=142 Identities=17% Similarity=0.129 Sum_probs=94.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCC--CChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| .|+|.+.+.++.. .....+++.++|++|++.
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 4455566566688999999999999999999999999875 3999998877643 223355667999999852
Q ss_pred -------HHHHhcCC-CccchHHH-HHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGC-PHAAIRED-ISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~-~~~~~~~~-~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++..... ......+. ...+.+.+..+.. ....+..+.+ |+||+||++|||+|+ +|+|+|+| |+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 176 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11111100 00000111 1112222232221 1223555556 999999999999999 99999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 177 ~~LD~~~ 183 (252)
T PRK14272 177 SALDPAS 183 (252)
T ss_pred ccCCHHH
Confidence 9998754
No 276
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=2.6e-20 Score=154.45 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=107.6
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-------------HHHHHh
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-------------GEFLMR 129 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-------------~~~~~~ 129 (275)
+|+...++.-++....+|+++.|+|.+||||||||+||.=+..|+ |.|.+.+.++....+ ..++.+
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 677777777777778889999999999999999999999999999 999998877643211 123456
Q ss_pred ccccCchhHHHHHhcC------CCc----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913 130 NGALPEERIRAVETGG------CPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 130 ig~v~q~~~~~~~~~~------~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl 197 (275)
.|++||.+....-++. +|- .+-.+....+...|..++...+.+.++.. ||||+||++|||||+ +|.++
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm 174 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM 174 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence 8999998642211111 110 11123334556677777777777777777 999999999999999 99999
Q ss_pred EEe-CCCCCCc
Q 023913 198 IID-VSGGDKI 207 (275)
Q Consensus 198 llD-~t~g~d~ 207 (275)
++| ||+.+|+
T Consensus 175 LFDEPTSALDP 185 (256)
T COG4598 175 LFDEPTSALDP 185 (256)
T ss_pred eecCCcccCCH
Confidence 999 8888875
No 277
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.4e-20 Score=164.40 Aligned_cols=144 Identities=14% Similarity=0.067 Sum_probs=96.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--C---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++ | + |+|.+.+.++... ....+++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 3456666666678899999999999999999999999865 2 4 9999988776543 22345667999999863
Q ss_pred H-------HHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 R-------AVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ~-------~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
. ++.+...... ........+.+.++.+... ...+..+.+ |+||+||+.|||+++ +|+++|+| |+
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 1111100000 0011111222334433221 123445555 999999999999999 99999999 99
Q ss_pred CCCCcccc
Q 023913 203 GGDKIPRK 210 (275)
Q Consensus 203 ~g~d~~~~ 210 (275)
+++|...+
T Consensus 178 ~gLD~~~~ 185 (253)
T PRK14261 178 SALDPIAT 185 (253)
T ss_pred ccCCHHHH
Confidence 99987643
No 278
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.1e-20 Score=167.75 Aligned_cols=142 Identities=17% Similarity=0.118 Sum_probs=95.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++... ....+++.++|++|++.
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 445556666668899999999999999999999999864 37 9999988766432 12245667999999852
Q ss_pred ------HHHHhcCCC-ccc-hHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCP-HAA-IREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~-~~~-~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+.... ... .......+.+.++.+.. ....+..+.+ |+||+||+.|||+|+ +|+++|+| |++
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 211 (286)
T PRK14275 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTS 211 (286)
T ss_pred CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 122111100 000 01111222334444432 1233455556 999999999999999 89999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 212 gLD~~~ 217 (286)
T PRK14275 212 ALDPKA 217 (286)
T ss_pred cCCHHH
Confidence 998754
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=6.5e-20 Score=177.56 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=102.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccCCCCCh-HHHHHhccccCchhH------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------ 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~------ 138 (275)
++++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++..... ..+++++||++|++.
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4455566666788999999999999999999999999985 6 999998877653322 344567999999841
Q ss_pred -----HHHHhcCCC-c-----cchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 -----RAVETGGCP-H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 -----~~~~~~~~~-~-----~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++... . .........+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 111121110 0 011111233455677776643 35667777 999999999999999 89999999 999
Q ss_pred CCCcccc
Q 023913 204 GDKIPRK 210 (275)
Q Consensus 204 g~d~~~~ 210 (275)
++|....
T Consensus 433 ~LD~~~~ 439 (500)
T TIGR02633 433 GVDVGAK 439 (500)
T ss_pred CcCHhHH
Confidence 9997654
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=3.7e-20 Score=154.39 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=86.2
Q ss_pred ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCc
Q 023913 57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (275)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (275)
+.+.|++ .+..+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+. +.++|++|
T Consensus 6 ~~~~~~~---~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q 71 (166)
T cd03223 6 LSLATPD---GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQ 71 (166)
T ss_pred EEEEcCC---CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECC
Confidence 3455544 334555665666889999999999999999999999999998 99987541 56899999
Q ss_pred hhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.. ...+..+.+.. . ...+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 72 ~~~~-------~~~tv~~nl~~----------~-----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~ 126 (166)
T cd03223 72 RPYL-------PLGTLREQLIY----------P-----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126 (166)
T ss_pred CCcc-------ccccHHHHhhc----------c-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH
Confidence 8521 11222222210 0 1233 999999999999999 99999999 888988644
No 281
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.82 E-value=3e-20 Score=164.97 Aligned_cols=139 Identities=13% Similarity=-0.030 Sum_probs=95.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----C-CcEEEEeccCCCCChHHHHHhccccCchhHH--H
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--A 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--~ 140 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++.. .....+.++|++|++.. .
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--cccccceEEEEecCCccccC
Confidence 3445566666688999999999999999999999999998 8 999998877642 11123569999998520 0
Q ss_pred --------HHhcCCCccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 141 --------VETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 141 --------~~~~~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
..... ...........+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 172 (254)
T PRK10418 94 PLHTMHTHARETC-LALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172 (254)
T ss_pred ccccHHHHHHHHH-HHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 00000 00000011123344566655433 23455555 999999999999999 89999999 899998
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
...
T Consensus 173 ~~~ 175 (254)
T PRK10418 173 VVA 175 (254)
T ss_pred HHH
Confidence 754
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.2e-20 Score=182.61 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=97.5
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC----------CCCChHH---HH-Hhcccc
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----------FTKEDGE---FL-MRNGAL 133 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~----------~~~~~~~---~~-~~ig~v 133 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++ ....... ++ +.+||+
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 4555666666889999999999999999999999999998 9998766432 1112222 22 369999
Q ss_pred CchhH----------HHHHhcCCC--ccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~----------~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
+|++. +++.++... .....+....+.+.|+.++... ..+..+.+ |+||+||++||++|+ +|+|
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l 189 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 99751 122211100 1111122234455677776532 34666777 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 190 LllDEPt~~LD~~~ 203 (623)
T PRK10261 190 LIADEPTTALDVTI 203 (623)
T ss_pred EEEeCCCCccCHHH
Confidence 9999 899998654
No 283
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=5.4e-20 Score=157.07 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcC
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~ 145 (275)
.++.+.++...+|++++|+|+||||||||+++|+|++ +|+ |+|.+.+.++.. ..+++.++|++|++. .
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~------~ 93 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDI------L 93 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCccc------C
Confidence 3455555566789999999999999999999999999 888 999998877653 245677999998742 1
Q ss_pred CCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+..+..+.+... ..+ ... |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 94 ~~~~t~~~~i~~~----~~~-----~~L----S~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 94 HPTLTVRETLMFA----AKL-----RGL----SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred CCCCcHHHHHHHH----HHh-----ccC----CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 1223333332110 001 022 999999999999999 99999999 888888643
No 284
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=7.2e-20 Score=162.03 Aligned_cols=142 Identities=15% Similarity=-0.003 Sum_probs=96.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHHHH-hccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~----- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+ ++|+ |+|.+.+.++.........+ .++|++|++.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 4455566666688999999999999999999999997 5677 99999888776544333333 4778888742
Q ss_pred ---HHHHhcCCC--------ccchHHHHHHHHHHHHHhhcc-cccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 ---RAVETGGCP--------HAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ---~~~~~~~~~--------~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++...... .....+....+.+.++.+... ...+..+. . |+||+||++|||+|+ +|+|+|+| |+
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 121111000 000011112334456655543 23445554 3 999999999999999 99999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 180 ~~LD~~~ 186 (252)
T CHL00131 180 SGLDIDA 186 (252)
T ss_pred ccCCHHH
Confidence 9998764
No 285
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.2e-20 Score=184.11 Aligned_cols=141 Identities=16% Similarity=0.025 Sum_probs=101.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhH------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------ 138 (275)
+++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .++++++|+||++.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 3555666666889999999999999999999999999998 9999998887654332 23457999999852
Q ss_pred ----HHHHhcCCC-cc-chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ----~~~~~~~~~-~~-~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++...... .. ...+....+.+.|+.++.. ...++.+.+ |+||+||++|||+|+ +|+|+|+| |++++|..
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111111000 00 1111123344567777663 345677777 999999999999999 99999999 89999865
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 498 ~ 498 (623)
T PRK10261 498 I 498 (623)
T ss_pred H
Confidence 3
No 286
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.4e-20 Score=162.87 Aligned_cols=142 Identities=15% Similarity=0.081 Sum_probs=95.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC------CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~------g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ....+++.++|++|++.
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 44555666666889999999999999999999999999874 8999988776432 22345677999999863
Q ss_pred ------HHHHhcCCCc-cchHHHH-HHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~-~~~~~~~-~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... ....+.. ....+.+..+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 176 (251)
T PRK14249 97 FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176 (251)
T ss_pred CcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1121111100 0011111 1122233333221 123444555 999999999999999 89999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 177 ~LD~~~ 182 (251)
T PRK14249 177 ALDPVS 182 (251)
T ss_pred cCCHHH
Confidence 998754
No 287
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=6.3e-20 Score=157.54 Aligned_cols=125 Identities=22% Similarity=0.161 Sum_probs=83.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~ 140 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+ +++|++|++. ++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence 3455555566789999999999999999999999999998 9998876 4788888753 22
Q ss_pred HHhcCCCccchHHHHHHHHH---HHHHhhc-----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 141 VETGGCPHAAIREDISINLG---PLEELSN-----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~---~L~~l~~-----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+.+. ... . ........+ ..+.+.. ....+....+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 86 l~~~-~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 86 ILFG-KPF-D-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred hccC-CCc-C-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 2221 111 1 111111111 1111111 1112233344 999999999999999 89999999 888888643
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=9.7e-20 Score=161.99 Aligned_cols=151 Identities=14% Similarity=0.049 Sum_probs=100.8
Q ss_pred ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.+..+.|++ . ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus 23 ~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~ 99 (257)
T cd03288 23 HDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSI 99 (257)
T ss_pred EEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEE
Confidence 445556654 2 34555555566789999999999999999999999999998 999999988766555667778999
Q ss_pred cCchhHHHHH-----hcCCCccchHHHHHHH------HHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913 133 LPEERIRAVE-----TGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 133 v~q~~~~~~~-----~~~~~~~~~~~~~~~~------~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl 197 (275)
++|++..+.. +...... ........ .+.+..+ ......+....+ |+||+||++|||+|+ +|+++
T Consensus 100 v~q~~~l~~~tv~~nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 100 ILQDPILFSGSIRFNLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred ECCCCcccccHHHHhcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998632110 1111001 11111111 1112221 111112222334 999999999999999 89999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
|+| |++++|...
T Consensus 179 llDEPt~gLD~~~ 191 (257)
T cd03288 179 IMDEATASIDMAT 191 (257)
T ss_pred EEeCCccCCCHHH
Confidence 999 999998754
No 289
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=6e-20 Score=178.60 Aligned_cols=142 Identities=17% Similarity=0.029 Sum_probs=97.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEE-eccC---CCCC---hHHHHHhccccCchhH--
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDI---FTKE---DGEFLMRNGALPEERI-- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~-~~d~---~~~~---~~~~~~~ig~v~q~~~-- 138 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+. +.+. .... ...+++.+||++|++.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 3555666667889999999999999999999999999998 999885 5332 2111 1233457999999852
Q ss_pred ------HHHHhcCCCccchHHHHHHHHHHHHHhhccc-----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913 139 ------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (275)
Q Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g 204 (275)
+++................+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+|+|+| |+++
T Consensus 378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~ 457 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457 (520)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1221110000111111123445666665542 24566667 999999999999999 89999999 9999
Q ss_pred CCcccc
Q 023913 205 DKIPRK 210 (275)
Q Consensus 205 ~d~~~~ 210 (275)
+|...+
T Consensus 458 LD~~~~ 463 (520)
T TIGR03269 458 MDPITK 463 (520)
T ss_pred CCHHHH
Confidence 997553
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=4.6e-20 Score=179.80 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=99.7
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChH---HHHHhccccCchhH-------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------- 138 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++..|+|.+.+.++...... .+++.++|++|++.
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~ 379 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence 45555566667899999999999999999999999986349999988776544322 23457999999851
Q ss_pred ---HHHHhcCCCc---cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ---RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ---~~~~~~~~~~---~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.++.... .........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 459 (529)
T PRK15134 380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459 (529)
T ss_pred cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence 1111111000 01111123344567776654 235666666 999999999999999 89999999 99999976
Q ss_pred cc
Q 023913 209 RK 210 (275)
Q Consensus 209 ~~ 210 (275)
.+
T Consensus 460 ~~ 461 (529)
T PRK15134 460 VQ 461 (529)
T ss_pred HH
Confidence 43
No 291
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.81 E-value=1.4e-19 Score=194.24 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=112.1
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ +. .++.+.++..++|+.++|+|++|||||||+++|+++++|+ |+|.++|.|+.+.....+++++++
T Consensus 1288 ~nVsf~Y~~---~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957 1288 RNYCLRYRE---DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred EEEEEEeCC---CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence 788898976 43 3455555566789999999999999999999999999998 999999999999988999999999
Q ss_pred cCchhHHHH---HhcCCC--ccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 133 LPEERIRAV---ETGGCP--HAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 133 v~q~~~~~~---~~~~~~--~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
+||++..+. ..+..+ ..+. +++..+.+ .+.++.. ..++|..+.| |+||+||++|||||+ +|+|+
T Consensus 1365 VpQdp~LF~gTIr~NLdp~~~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1365 IPQDPVLFSGSLRMNLDPFSQYSD-EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred ECCCCcccCccHHHHcCcccCCCH-HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 999984211 111111 1221 12222111 2222221 2467777776 999999999999999 89999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
||| ||+.+|...
T Consensus 1444 iLDEaTSalD~~T 1456 (1522)
T TIGR00957 1444 VLDEATAAVDLET 1456 (1522)
T ss_pred EEECCcccCCHHH
Confidence 999 788887643
No 292
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=5.7e-20 Score=163.50 Aligned_cols=139 Identities=17% Similarity=0.103 Sum_probs=91.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-----------EEeccCCCCChHHHHH---hcccc
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLM---RNGAL 133 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-----------i~~~d~~~~~~~~~~~---~ig~v 133 (275)
.++.+.+ +..+|++++|+|+|||||||||++|+|+++|+ |+|. +.+.++.... ...++ .++|+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF-TKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh-HHhhhcccceeee
Confidence 3555554 67789999999999999999999999999998 9985 4454443221 12222 35666
Q ss_pred CchhHHHHH-hcC--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 134 PEERIRAVE-TGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 134 ~q~~~~~~~-~~~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+|....... +.+ ..............+.++.+......+..+.+ |+||+||+.+||+|+ +|+++|+| |++++|.
T Consensus 93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 665321110 000 00011111123344566666555445555566 999999999999999 89999999 8999987
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 173 ~~ 174 (255)
T cd03236 173 KQ 174 (255)
T ss_pred HH
Confidence 54
No 293
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.6e-20 Score=176.80 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=101.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH--------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI-------- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~-------- 138 (275)
..+.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+. .+++.++|++|++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 3455665666889999999999999999999999999988 9999888776543333 33457999999852
Q ss_pred ---HHHHhcCCCcc-------chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913 139 ---RAVETGGCPHA-------AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG 204 (275)
Q Consensus 139 ---~~~~~~~~~~~-------~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g 204 (275)
+++.++..... ........+.+.++.+... ...+..+.+ |+||+||+.||++|+ +|+|+||| |+++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 11212111100 0111122345567777653 446677777 999999999999999 89999999 9999
Q ss_pred CCcccc
Q 023913 205 DKIPRK 210 (275)
Q Consensus 205 ~d~~~~ 210 (275)
+|...+
T Consensus 427 LD~~~~ 432 (501)
T PRK11288 427 IDVGAK 432 (501)
T ss_pred CCHhHH
Confidence 997653
No 294
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9e-20 Score=161.40 Aligned_cols=142 Identities=15% Similarity=0.051 Sum_probs=94.9
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CC---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RD---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|++ .| + |+|.+.+.++... ....+++.++|++|++.
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 44555666666889999999999999999999999985 35 4 9999988776432 22345567999999852
Q ss_pred ------HHHHhcCCC-ccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCP-HAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~-~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+.... ....... ...+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+|+|+| |++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14239 98 FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177 (252)
T ss_pred CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 122111000 0000111 12222334444321 123445555 999999999999999 99999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 178 ~LD~~~ 183 (252)
T PRK14239 178 ALDPIS 183 (252)
T ss_pred ccCHHH
Confidence 998754
No 295
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=1e-19 Score=176.28 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH---------
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~--------- 138 (275)
++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+||++|++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 345555566789999999999999999999999999998 9999988777544332 34457999999841
Q ss_pred --HHHHhcCCC---c----cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 --RAVETGGCP---H----AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 --~~~~~~~~~---~----~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+++.+.... . .........+.+.++.+... ...+..+.+ |+||+||+.|||+|+ +|.++||| |++++
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 122121110 0 01111123345567777663 446777777 999999999999999 89999999 99999
Q ss_pred Ccccc
Q 023913 206 KIPRK 210 (275)
Q Consensus 206 d~~~~ 210 (275)
|....
T Consensus 427 D~~~~ 431 (501)
T PRK10762 427 DVGAK 431 (501)
T ss_pred CHhHH
Confidence 97653
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.81 E-value=1.8e-19 Score=155.33 Aligned_cols=189 Identities=28% Similarity=0.346 Sum_probs=131.9
Q ss_pred cccccccCC-CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc
Q 023913 72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA 150 (275)
Q Consensus 72 ~~~~~~~~~-geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~ 150 (275)
.+++..... -.+++|+|++|||||||++.++..+....++.+..+++....+....+..|.- .....++|.||.
T Consensus 12 ~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~-----~~~l~~gcic~~ 86 (207)
T TIGR00073 12 KNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP-----AIQINTGKECHL 86 (207)
T ss_pred HHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc-----EEEEcCCCcccC
Confidence 344444444 67889999999999999999998754335788888887543355555544420 112267888875
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccccccCEEEEecCCC
Q 023913 151 IREDISINLGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 228 (275)
Q Consensus 151 ~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl 228 (275)
....+. ..+..+.. ..++.+++|+.|- ..+..+ .+. .-.++++|++.+++.+..+..++..++++++||+|+
T Consensus 87 ~~~~~~---~~l~~~~~-~~~d~IiIEt~G~l~~~~~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl 160 (207)
T TIGR00073 87 DAHMVA---HALEDLPL-DDIDLLFIENVGNLVCPADF--DLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADL 160 (207)
T ss_pred ChHHHH---HHHHHhcc-CCCCEEEEecCCCcCCCccc--ccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHc
Confidence 443332 34554433 3569999998771 111111 222 456789999888776666667788999999999999
Q ss_pred CccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 229 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+......+.+.+.+++++|.++++++|+++++|+++++++..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~ 203 (207)
T TIGR00073 161 AEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLE 203 (207)
T ss_pred cccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 8653344667777888889999999999999999999998754
No 297
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=8.4e-20 Score=177.95 Aligned_cols=141 Identities=12% Similarity=0.038 Sum_probs=98.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCChHH---HH-HhccccCchhH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~~~~---~~-~~ig~v~q~~~ 138 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++| + |+|.+.+.++......+ .+ +.+||++|++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 455555556678999999999999999999999999986 5 99999888775443322 22 46999999852
Q ss_pred H----------HHHhc--CCCccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 139 R----------AVETG--GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 139 ~----------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
. ++... ........+....+.+.++.+.... ..++.+.+ |+||+||++|||+|+ +|+++|+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 01100 0000111112233455677766543 23566667 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++++|...
T Consensus 183 Pt~~LD~~~ 191 (529)
T PRK15134 183 PTTALDVSV 191 (529)
T ss_pred CCCccCHHH
Confidence 899998654
No 298
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.3e-19 Score=172.12 Aligned_cols=144 Identities=15% Similarity=0.076 Sum_probs=114.0
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI--- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~--- 138 (275)
+|+.-+++.++++...+||+++|+|.||||||||+|+|+|.++|+ |+|.+.+......++.+.. ..|..++|+..
T Consensus 17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 777888999999999999999999999999999999999999999 9999998887655655444 45888999863
Q ss_pred -----HHHHhcCCCcc-----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 -----RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 -----~~~~~~~~~~~-----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+|+.++..+.. ..+.....+.+.|..+.....++..+.+ |.||+|.++||||+. +++|+||| ||+.+
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaL 176 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAAL 176 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 44445544432 1233335556677777654447777888 999999999999999 89999999 77776
Q ss_pred Cc
Q 023913 206 KI 207 (275)
Q Consensus 206 d~ 207 (275)
..
T Consensus 177 t~ 178 (500)
T COG1129 177 TV 178 (500)
T ss_pred CH
Confidence 54
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.81 E-value=4.8e-20 Score=198.83 Aligned_cols=141 Identities=16% Similarity=0.031 Sum_probs=104.6
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~ 139 (275)
.++.+.++...+|++++|+|+||||||||+|+|+|+++|+ |+|.+.+.++.. ...+.++.+||+||++. +
T Consensus 1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccCCCCCCHHH
Confidence 4666666667889999999999999999999999999999 999999888753 23455678999999852 2
Q ss_pred HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
++.+.... .....+....+.+.|+.+......++.+.+ |+||+||+++|+||+ +|+|++|| |++|+|...+
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 22211110 011111112234466777666666777777 999999999999999 89999999 9999997654
No 300
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.2e-20 Score=163.46 Aligned_cols=151 Identities=14% Similarity=0.073 Sum_probs=100.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEF 126 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~ 126 (275)
.++.+.|+ ++.++.+.++...+|++++|+|+||||||||+++|+|++++ + |+|.+.+.++... ....+
T Consensus 29 ~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 29 RNLNLFYG----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEC----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 44455553 34455566666688999999999999999999999999873 6 9999988877532 23345
Q ss_pred HHhccccCchhH-------HHHHhcC-CCccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913 127 LMRNGALPEERI-------RAVETGG-CPHAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA 192 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~-~~~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~ 192 (275)
++.++|++|++. +++.+.. ......... ...+.+.++.+... ...+..+.+ |+||+||++|||+|+
T Consensus 105 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 105 RRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 678999999852 1111110 000000111 11223334433321 123445555 999999999999999
Q ss_pred -CceEEEEe-CCCCCCccc
Q 023913 193 -DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 -~~~vlllD-~t~g~d~~~ 209 (275)
+|+|+|+| |++++|...
T Consensus 185 ~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 185 IEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred CCCCEEEEeCCcccCCHHH
Confidence 99999999 999998754
No 301
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1e-19 Score=160.89 Aligned_cols=143 Identities=15% Similarity=0.057 Sum_probs=96.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|++. |+ |+|.+.+.++... ....+++.++|+||++.
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 3445556666667899999999999999999999999864 36 9999998876532 23355678999999853
Q ss_pred -------HHHHhcCCCc-cchHH-HHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGCPH-AAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~~~-~~~~~-~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++....... ....+ ....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111110000 00011 112223344443321 123444555 999999999999999 99999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 175 ~gLD~~~ 181 (250)
T PRK14266 175 SALDPIS 181 (250)
T ss_pred ccCCHHH
Confidence 9999754
No 302
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.3e-19 Score=146.52 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC--CCC----hHHHHHhccccCch
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKE----DGEFLMRNGALPEE 136 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~--~~~----~~~~~~~ig~v~q~ 136 (275)
+|+..+++.+..+....|+.+.++||+|||||||++.|.-+.-|. |...+-++.+. ... -.++++++|+++|.
T Consensus 11 ~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 11 FYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred ccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 778899999999999999999999999999999999998887787 98888777653 221 23567889999997
Q ss_pred hH--------HHHHhcCCCcc--chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 137 RI--------RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 137 ~~--------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
-. +++.-..|.-. +..+....+.+.|.++.+....|+.+.. ||||+||++|||||. .|.|+++| ||.
T Consensus 91 y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdepta 170 (242)
T COG4161 91 YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170 (242)
T ss_pred hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccc
Confidence 42 11111112111 1223345567788888777778887777 999999999999998 99999999 777
Q ss_pred CCCc
Q 023913 204 GDKI 207 (275)
Q Consensus 204 g~d~ 207 (275)
.+|+
T Consensus 171 aldp 174 (242)
T COG4161 171 ALDP 174 (242)
T ss_pred ccCH
Confidence 7775
No 303
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.3e-20 Score=162.99 Aligned_cols=156 Identities=19% Similarity=0.101 Sum_probs=107.5
Q ss_pred cccCCC-cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhHHHHHhcCCCcc
Q 023913 76 NFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRAVETGGCPHA 149 (275)
Q Consensus 76 ~~~~~g-eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~~~~~~~~~~ 149 (275)
.|..++ .+++|-|++|||||||+|+|+|+.+|+ |.|.+++.-+.+.. -..-.|++|||||+...+..++..-+.
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL 97 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL 97 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecch
Confidence 344444 799999999999999999999999999 99998876544321 122356899999996544333222221
Q ss_pred chH---HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccccc-----------
Q 023913 150 AIR---EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGG----------- 212 (275)
Q Consensus 150 ~~~---~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~~~----------- 212 (275)
.+. .......+.+..++..+..++.+.. |||++||++|+|||+ .|.++++| |.+.+|.+.|..
T Consensus 98 ~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e 177 (352)
T COG4148 98 RYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE 177 (352)
T ss_pred hhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh
Confidence 110 0111223344555566666776666 999999999999999 99999999 888888876531
Q ss_pred -------------ccccccCEEEEecCCCCcc
Q 023913 213 -------------PGITQADLLVINKTDLASA 231 (275)
Q Consensus 213 -------------~~i~~adiivlNK~Dl~~~ 231 (275)
+..+.||-||+-+.-.+..
T Consensus 178 ~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 178 INIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred cCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 1235788777766555544
No 304
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.9e-20 Score=167.53 Aligned_cols=153 Identities=15% Similarity=0.077 Sum_probs=101.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEF 126 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~ 126 (275)
.++.+.|++ +...++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |.|.+++.++... ....+
T Consensus 84 ~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l 161 (329)
T PRK14257 84 RNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL 161 (329)
T ss_pred EeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh
Confidence 566666654 12334555556667899999999999999999999999985 45 9999999887532 22456
Q ss_pred HHhccccCchhH-------HHHHhcCCC-ccchHHHH-HHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc
Q 023913 127 LMRNGALPEERI-------RAVETGGCP-HAAIREDI-SINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA 192 (275)
Q Consensus 127 ~~~ig~v~q~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~ 192 (275)
++.++|+||++. +++.++... .....+.. ..+...++.+.... ..+..... |+||+||++||||++
T Consensus 162 r~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~ 241 (329)
T PRK14257 162 RTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIA 241 (329)
T ss_pred hccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 678999999873 222221100 01111111 11233444433211 22333344 999999999999999
Q ss_pred -CceEEEEe-CCCCCCccc
Q 023913 193 -DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 -~~~vlllD-~t~g~d~~~ 209 (275)
+|+|+|+| |++++|...
T Consensus 242 ~~p~IlLLDEPts~LD~~~ 260 (329)
T PRK14257 242 LEPEVLLMDEPTSALDPIA 260 (329)
T ss_pred hCCCEEEEeCCcccCCHHH
Confidence 99999999 899998643
No 305
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=1.7e-19 Score=174.15 Aligned_cols=147 Identities=16% Similarity=0.027 Sum_probs=103.1
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccCCCC-ChHHHHHhccccCchhHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRA 140 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~ 140 (275)
.|++..++.+.++...+|++++|+||||||||||+++|+|++++ + |+|.+.+.++... .....++.++|++|++...
T Consensus 269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 34445555666666788999999999999999999999998876 4 9999988765321 2233556799999975211
Q ss_pred ---------HHhcC-CCcc-----chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 141 ---------VETGG-CPHA-----AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 141 ---------~~~~~-~~~~-----~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
+...+ .... ........+.+.++.+.... ..+..+.+ |+||+||++||++|+ +|+|+|+| |
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 11111 1000 01111233455677776654 56677777 999999999999999 99999999 9
Q ss_pred CCCCCcccc
Q 023913 202 SGGDKIPRK 210 (275)
Q Consensus 202 t~g~d~~~~ 210 (275)
++++|....
T Consensus 429 t~gLD~~~~ 437 (490)
T PRK10938 429 LQGLDPLNR 437 (490)
T ss_pred cccCCHHHH
Confidence 999997543
No 306
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.81 E-value=7.8e-20 Score=177.82 Aligned_cols=143 Identities=16% Similarity=0.120 Sum_probs=97.8
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEe-----------------------ccCC-
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVT-----------------------NDIF- 119 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~-----------------------~d~~- 119 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|++ +|+ |+|.+.+ .++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 445555666667889999999999999999999999996 687 9998862 1110
Q ss_pred ------CCCh---HHHHHhccccCch-hH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-Ch
Q 023913 120 ------TKED---GEFLMRNGALPEE-RI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SG 179 (275)
Q Consensus 120 ------~~~~---~~~~~~ig~v~q~-~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~ 179 (275)
.... ..+++.++|++|+ .. +++.+.... .....+....+.+.++.+......+..+.+ |+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 0011 2345579999996 21 222211100 011112223445567777665556667777 99
Q ss_pred hHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 180 G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
||+||++||++|+ +|+++||| |++++|...
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~ 203 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQT 203 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH
Confidence 9999999999999 89999999 899998653
No 307
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.8e-20 Score=164.11 Aligned_cols=142 Identities=16% Similarity=0.098 Sum_probs=105.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-C----C-CcEEEEeccCCCCChHHHH----HhccccCch
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEE 136 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~----~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~ 136 (275)
..+++.++++...+||+++|+|.+||||||+.+.|+|+++ + . |+|.+.+.++...+..+++ +.|+|+||+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3467777777788899999999999999999999999997 3 3 7899999988877765432 369999999
Q ss_pred hHHHH-----------HhcC-CCcc-chHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 137 RIRAV-----------ETGG-CPHA-AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 137 ~~~~~-----------~~~~-~~~~-~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
+...+ +.-. .... ..++....+.+.|+.++... ..+.+..| ||||+||+.||.+|+ +|+++|
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 74111 1000 0000 11223345566777776653 34666777 999999999999999 999999
Q ss_pred Ee-CCCCCCcc
Q 023913 199 ID-VSGGDKIP 208 (275)
Q Consensus 199 lD-~t~g~d~~ 208 (275)
.| ||+++|..
T Consensus 177 ADEPTTALDvt 187 (316)
T COG0444 177 ADEPTTALDVT 187 (316)
T ss_pred eCCCcchhhHH
Confidence 99 99999863
No 308
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.2e-20 Score=158.17 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=90.0
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--CC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
+..+.|++...+..++.+.++...+|++++|+|+||||||||+++|+|++. |+ |++.+.+.++. ..+++.++|
T Consensus 8 ~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~ 83 (192)
T cd03232 8 NLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGY 83 (192)
T ss_pred eeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEE
Confidence 344555431111334445555567899999999999999999999999863 66 99998877653 345567999
Q ss_pred cCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 133 LPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 133 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++|++.. .+..+..+.+.... .+. .. |+||+||++|||+++ +|+++|+| |++++|...
T Consensus 84 ~~q~~~~------~~~~tv~~~l~~~~-~~~--------~L----SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~ 143 (192)
T cd03232 84 VEQQDVH------SPNLTVREALRFSA-LLR--------GL----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143 (192)
T ss_pred ecccCcc------ccCCcHHHHHHHHH-HHh--------cC----CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH
Confidence 9987421 12233333322100 000 22 999999999999999 89999999 888888654
No 309
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=164.81 Aligned_cols=143 Identities=17% Similarity=0.096 Sum_probs=96.9
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
++.++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++... ....+++.++|++|++.
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 3455556666678899999999999999999999999986 56 9999988876532 23355678999999853
Q ss_pred -------HHHHhcCCCc-------------cc-hHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913 139 -------RAVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA 192 (275)
Q Consensus 139 -------~~~~~~~~~~-------------~~-~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~ 192 (275)
+++.++.... .. .......+...++.+... ...+..+.+ |+||+||++|||+|+
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 1122111000 00 000112223344444321 122444555 999999999999999
Q ss_pred -CceEEEEe-CCCCCCccc
Q 023913 193 -DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 -~~~vlllD-~t~g~d~~~ 209 (275)
+|+|+|+| |++++|...
T Consensus 217 ~~p~lLLLDEPtsgLD~~~ 235 (305)
T PRK14264 217 VDPEVILMDEPASALDPIA 235 (305)
T ss_pred cCCCEEEEeCCcccCCHHH
Confidence 89999999 999998754
No 310
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=161.05 Aligned_cols=143 Identities=13% Similarity=0.026 Sum_probs=94.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--C---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~ 138 (275)
.+.++.+.++...+|++++|+|+||||||||+++|+|+++ | + |+|.+.+.++... ....+++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 3445556666668899999999999999999999999864 3 4 9999988776431 22344567999999852
Q ss_pred -------HHHHhcCC-CccchHHH-HHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 -------RAVETGGC-PHAAIRED-ISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 -------~~~~~~~~-~~~~~~~~-~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+++.+... ......+. .....+.++.+.. ....+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111100 00000111 1112223333322 1223445555 999999999999999 99999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 177 ~~LD~~~ 183 (252)
T PRK14255 177 SALDPIS 183 (252)
T ss_pred ccCCHHH
Confidence 9998754
No 311
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=173.47 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=101.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhHH---HHH
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERIR---AVE 142 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~~---~~~ 142 (275)
++++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|++|++.. +..
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 34555666667889999999999999999999999999998 99999887776544332 34568999987420 000
Q ss_pred -----------hc-CCCc-c--chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 143 -----------TG-GCPH-A--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 143 -----------~~-~~~~-~--~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+. .... . ........+.+.++.+... ...+..+.+ |+||+||+.|||+++ +|+|+||| ||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 00 0000 0 1011122334466666553 345777777 999999999999999 99999999 999
Q ss_pred CCCcccc
Q 023913 204 GDKIPRK 210 (275)
Q Consensus 204 g~d~~~~ 210 (275)
++|...+
T Consensus 421 gLD~~~~ 427 (491)
T PRK10982 421 GIDVGAK 427 (491)
T ss_pred ccChhHH
Confidence 9997654
No 312
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=161.13 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=95.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~- 138 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++| .|+|.+.+.++... ....+++.++|++|++.
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 3455666666788999999999999999999999999987 38888887765321 22345667999998752
Q ss_pred ------HHHHhcCCCc-c-chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ------~~~~~~~~~~-~-~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.+..... . ...+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+|+|+| |++
T Consensus 100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~ 179 (261)
T PRK14258 100 FPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179 (261)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1111110000 0 1111112233344444321 123444555 999999999999999 99999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 180 ~LD~~~ 185 (261)
T PRK14258 180 GLDPIA 185 (261)
T ss_pred cCCHHH
Confidence 998754
No 313
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.80 E-value=2.2e-19 Score=174.33 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=100.6
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhH----------
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI---------- 138 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~---------- 138 (275)
+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|+||++.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~ 358 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL 358 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence 44555556789999999999999999999999999998 99999888776544433 3346999999741
Q ss_pred -HHHHhc--C-CCc-cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETG--G-CPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~--~-~~~-~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++... . ... .........+.+.|+.+... ...+..+.+ |+||+||+.||++|+ +|+|+||| |++++|...
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~ 438 (510)
T PRK15439 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438 (510)
T ss_pred HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhH
Confidence 111110 0 000 00111112344567777665 456777777 999999999999999 99999999 999999765
Q ss_pred c
Q 023913 210 K 210 (275)
Q Consensus 210 ~ 210 (275)
+
T Consensus 439 ~ 439 (510)
T PRK15439 439 R 439 (510)
T ss_pred H
Confidence 4
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=7.2e-20 Score=154.24 Aligned_cols=95 Identities=22% Similarity=0.150 Sum_probs=77.2
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~ 142 (275)
+|++..++.+ .+...+|++++|+||||||||||+++|+|+++|+ |+|.+.+. .++|++|+..
T Consensus 9 ~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q~~~---- 71 (177)
T cd03222 9 RYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQYID---- 71 (177)
T ss_pred EECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcccCC----
Confidence 4555544443 4455779999999999999999999999999998 99988653 2677776420
Q ss_pred hcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
. |+||+||+++||+++ +|+++++| |++++|...
T Consensus 72 ------------------------------L----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 72 ------------------------------L----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred ------------------------------C----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 2 999999999999999 89999999 888998654
No 315
>PTZ00243 ABC transporter; Provisional
Probab=99.80 E-value=1.8e-19 Score=193.51 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=111.0
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ +.+ ++.+.++...+|+.++|+|++|||||||+++|+|+++|+ |+|.+++.|+.+.+..++++.++|
T Consensus 1312 ~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1312 EGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence 788898877 544 455555566789999999999999999999999999998 999999999999888899999999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-C-c
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D-Y 194 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~-~ 194 (275)
+||++. +|+... ...+. +++..+.+ .+.++. ...++|..+.| |+||+||++|||||+ + +
T Consensus 1389 VpQdp~LF~gTIreNIdp~--~~~sd-eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1389 IPQDPVLFDGTVRQNVDPF--LEASS-AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred ECCCCccccccHHHHhCcc--cCCCH-HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999974 222211 11222 12222111 122221 13457777766 999999999999999 5 7
Q ss_pred eEEEEe-CCCCCCcc
Q 023913 195 IIYIID-VSGGDKIP 208 (275)
Q Consensus 195 ~vlllD-~t~g~d~~ 208 (275)
+|+||| ||+.+|..
T Consensus 1466 ~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1466 GFILMDEATANIDPA 1480 (1560)
T ss_pred CEEEEeCCCccCCHH
Confidence 999999 78887754
No 316
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.4e-20 Score=163.03 Aligned_cols=151 Identities=16% Similarity=0.084 Sum_probs=97.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCC----CCChH
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF----TKEDG 124 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~----~~~~~ 124 (275)
.+..+.|++ ..++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.+.. .....
T Consensus 20 ~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 20 NKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred EEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 344444443 4555666666788999999999999999999999999874 5 99998876542 11233
Q ss_pred HHHHhccccCchhH-------HHHHhcCC-CccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHH
Q 023913 125 EFLMRNGALPEERI-------RAVETGGC-PHAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE 190 (275)
Q Consensus 125 ~~~~~ig~v~q~~~-------~~~~~~~~-~~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~lara 190 (275)
.+++.++|++|++. +++.++.. ........ .......++.+... ...+..+.+ |+||+||+.|||+
T Consensus 96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 55667999999752 12211100 00000111 11222233333221 123444555 9999999999999
Q ss_pred hc-CceEEEEe-CCCCCCccc
Q 023913 191 LA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 191 l~-~~~vlllD-~t~g~d~~~ 209 (275)
|+ +|+++|+| |++++|...
T Consensus 176 l~~~p~llllDEPt~gLD~~~ 196 (265)
T PRK14252 176 LATDPEILLFDEPTSALDPIA 196 (265)
T ss_pred HHcCCCEEEEeCCCccCCHHH
Confidence 99 99999999 899998754
No 317
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.79 E-value=3.6e-19 Score=163.17 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=129.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHH------HHhccccCchhHHHHH-hcCCCcc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEF------LMRNGALPEERIRAVE-TGGCPHA 149 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~------~~~ig~v~q~~~~~~~-~~~~~~~ 149 (275)
.+..+++|+|++|||||||++.|...+... .++.++..|+.... ...+ .+..+. ++..++. +++ +|
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~---~~~~~~r~~~~--~~ 128 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSR---HPNAFIRPSPS--SG 128 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcC---CCCeEEEecCC--cc
Confidence 446799999999999999999999988876 68999999987642 2221 111111 1110111 222 22
Q ss_pred chHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCC
Q 023913 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 229 (275)
Q Consensus 150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~ 229 (275)
........+.+.+..+ ...+++.+++|+.|.+|....+..++|-.+++++|..+++.+.....+++++|++|+||+|+.
T Consensus 129 ~l~~~a~~~~~~~~~~-~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 129 TLGGVARKTRETMLLC-EAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred cccchHHHHHHHHHHH-hccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Confidence 2222223333445444 356799999999999888766666668889999999999988766668899999999999998
Q ss_pred ccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhcccc
Q 023913 230 SAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 230 ~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+... .....+...+...+| ..||+++|+++++|++++++.+.
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~ 256 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIE 256 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 6521 233444455554442 26899999999999999998653
No 318
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=4.4e-19 Score=189.28 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=105.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEE-eccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~-~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.||+. .+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+. +.++.+.+...+++.+||
T Consensus 386 ~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~ 464 (1466)
T PTZ00265 386 KNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGV 464 (1466)
T ss_pred EEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccE
Confidence 6777888761 1123555666666889999999999999999999999999998 999995 467766666778889999
Q ss_pred cCchhH-------HHHHhcCCCcc-----------------------------------------chH-----------H
Q 023913 133 LPEERI-------RAVETGGCPHA-----------------------------------------AIR-----------E 153 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~-----------------------------------------~~~-----------~ 153 (275)
++|++. +++.++..... ... .
T Consensus 465 V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 544 (1466)
T PTZ00265 465 VSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI 544 (1466)
T ss_pred ecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccC
Confidence 999963 33434321000 000 0
Q ss_pred HHHHHHHHH-----HHh--hccccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 154 DISINLGPL-----EEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 154 ~~~~~~~~L-----~~l--~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
....+.+++ ..+ ....+++..+.+ |+||+||++|||||+ +|+|+||| ||+++|..
T Consensus 545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 001112222 222 122344444443 999999999999999 99999999 88888864
No 319
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.79 E-value=8.4e-20 Score=196.94 Aligned_cols=141 Identities=17% Similarity=0.057 Sum_probs=105.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------- 138 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCcCCCCCCHH
Confidence 44555666667889999999999999999999999999998 999999988753 23455678999999852
Q ss_pred HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+..... ....+....+.+.|+.+++....+..+.+ |+||+||+++|+||+ +|+|+||| |++++|...
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~s 1096 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 2222211100 11111123345577777776667777777 999999999999999 99999999 999998654
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.79 E-value=4e-19 Score=169.98 Aligned_cols=139 Identities=19% Similarity=0.078 Sum_probs=100.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhccccCchhHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERIR----- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~~----- 139 (275)
+++.++++...+||+++|+|.+|||||||.++|+|+++|+ |.|.+.+.+ .... ....++++-++||++..
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCcc
Confidence 4666777777889999999999999999999999999998 999999977 2222 33456678899998731
Q ss_pred ----HHHh-cCCCcc--chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 140 ----AVET-GGCPHA--AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 140 ----~~~~-~~~~~~--~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
.... ....+. ...+..+.+.+.++.+.+.. ..++.+.| ||||+||++|||||+ +|.++|+| |++.+|+.
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 1000 000011 11111223455666666554 47788888 999999999999999 99999999 77777764
No 321
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=6.6e-19 Score=168.49 Aligned_cols=140 Identities=19% Similarity=0.147 Sum_probs=104.7
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-----CcEEEEeccCCCCChHHHH----HhccccCchhHH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-----g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~ 139 (275)
.++.++++...+||++||+|.+||||||+.+.|+|++++. |+|.+.+.|+......+.+ ++|+|+||++..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4666777777889999999999999999999999999843 8999999888776654433 469999999741
Q ss_pred HHH--h--c-------C-CCccchHHHHHHHHHHHHHhhcccccc--ccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 140 AVE--T--G-------G-CPHAAIREDISINLGPLEELSNLFKAD--LLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 140 ~~~--~--~-------~-~~~~~~~~~~~~~~~~L~~l~~~~~~d--~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
.++ + + . .......+....+.+.|+.+++.+... ++.-+ ||||+||+.||+||+ +|.++|+| ||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 111 0 0 0 000112233355667778777765444 37777 999999999999999 99999999 89
Q ss_pred CCCCcc
Q 023913 203 GGDKIP 208 (275)
Q Consensus 203 ~g~d~~ 208 (275)
+.+|..
T Consensus 183 TaLDvt 188 (539)
T COG1123 183 TALDVT 188 (539)
T ss_pred cccCHH
Confidence 998864
No 322
>PLN03211 ABC transporter G-25; Provisional
Probab=99.78 E-value=4.2e-19 Score=176.75 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=101.1
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---CCcEEEEeccCCCCChHHHHHhccccCchhH--
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-- 138 (275)
+|++++++.+.+....+|++++|+|||||||||||++|+|.++| +|+|.+++.++. ....+++||++|++.
T Consensus 77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~ 152 (659)
T PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILY 152 (659)
T ss_pred cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccC
Confidence 45556666677777788999999999999999999999999887 399999887653 234567999999862
Q ss_pred ------HHHHhcC---CC-ccchHHHHHHHHHHHHHhhccccccc-----cccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 139 ------RAVETGG---CP-HAAIREDISINLGPLEELSNLFKADL-----LLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 139 ------~~~~~~~---~~-~~~~~~~~~~~~~~L~~l~~~~~~d~-----~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+++.+.. .+ .....+....+.+.++.+++....+. .+.+ |+||+||++||++|+ +|+|+++|
T Consensus 153 ~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 153 PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 2222211 11 11111222334556666665544333 2334 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
|++|+|...
T Consensus 233 PtsgLD~~~ 241 (659)
T PLN03211 233 PTSGLDATA 241 (659)
T ss_pred CCCCcCHHH
Confidence 999998643
No 323
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=4.7e-19 Score=155.31 Aligned_cols=142 Identities=17% Similarity=0.116 Sum_probs=99.7
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH------
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------ 140 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------ 140 (275)
.+++.+.++..++|++++++|+|||||||+||+|+|++.|+ |+|.+.|.++.. +..+..+++++++......
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 45788888888899999999999999999999999999999 999999998864 4567778888876553100
Q ss_pred ---HHhcCCCccchHHHHHHHHHHHHH-hhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 141 ---VETGGCPHAAIREDISINLGPLEE-LSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 141 ---~~~~~~~~~~~~~~~~~~~~~L~~-l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
.......+.--...+...++.|.+ +.........+.. |-|||.|+.+|.+|+ +|.|++|| ||-|+|+..+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 000000000001122222223322 2233334445555 999999999999999 89999999 8889997654
No 324
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.78 E-value=3e-19 Score=145.54 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=76.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~ 146 (275)
..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+. +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~----------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ----------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc-----------
Confidence 34555666666889999999999999999999999999998 99988652 35777765
Q ss_pred CccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
. |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus 71 --------------------------l----S~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 71 --------------------------L----SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred --------------------------C----CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 2 999999999999999 99999999 888888643
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=1.9e-19 Score=176.45 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+... ..+||++|++.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv 87 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGYLPQEPQLDPEKTV 87 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecCCCCCCCCcH
Confidence 445556666667889999999999999999999999999998 99887431 35888888752
Q ss_pred -HHHHhcCCC---------------ccc---h----------HH---------HHHHHHHHHHHhhccccccccccc-Ch
Q 023913 139 -RAVETGGCP---------------HAA---I----------RE---------DISINLGPLEELSNLFKADLLLCE-SG 179 (275)
Q Consensus 139 -~~~~~~~~~---------------~~~---~----------~~---------~~~~~~~~L~~l~~~~~~d~~~~e-S~ 179 (275)
+++.++.+. ... . .+ ....+...++.++.. ..++.+.+ |+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSg 166 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSG 166 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCH
Confidence 122111100 000 0 00 001122344444442 24566666 99
Q ss_pred hHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 180 G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
||+||++||++|+ +|+++||| |++++|...
T Consensus 167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~ 198 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHH
Confidence 9999999999999 89999999 899998754
No 326
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-19 Score=175.95 Aligned_cols=132 Identities=18% Similarity=0.097 Sum_probs=89.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+. ..+||++|++.
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcH
Confidence 445566666667889999999999999999999999999998 99987642 24677777531
Q ss_pred -HHHHhcC---------------CCc------cchH------------HHHHHHHHHHHHhhcccc-ccccccc-ChhHH
Q 023913 139 -RAVETGG---------------CPH------AAIR------------EDISINLGPLEELSNLFK-ADLLLCE-SGGDN 182 (275)
Q Consensus 139 -~~~~~~~---------------~~~------~~~~------------~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~ 182 (275)
+++.++. .+. .... +....+.+.++.++.... .+..+.+ |+||+
T Consensus 82 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 82 LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 1111100 000 0000 001223345666655332 2344556 99999
Q ss_pred HHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 183 LAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 183 q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
||++||++|+ +|+|+||| |++++|...
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~ 190 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINT 190 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHH
Confidence 9999999999 89999999 999998654
No 327
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.78 E-value=1.8e-19 Score=165.55 Aligned_cols=122 Identities=21% Similarity=0.135 Sum_probs=88.9
Q ss_pred EEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCC-ccchHHHH
Q 023913 86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI 155 (275)
Q Consensus 86 IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~-~~~~~~~~ 155 (275)
|+|||||||||||++|+|+++|+ |+|.+.+.++..... ..+.++|++|++. +++.++... .....+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999998 999999887754332 3467999999852 222221110 01111112
Q ss_pred HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~ 135 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL 135 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 2344566766666566777777 999999999999999 99999999 899998653
No 328
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-18 Score=160.62 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=115.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|.. .++.+.+.++....|+.++++|+.|+||||++++|..+++++ |.|.+++.|+.......+++.||.+
T Consensus 266 ~~V~F~y~~---~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 266 INVSFAYDP---RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEeeccc---cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 788888877 666666776777789999999999999999999999999998 9999999999877777889999999
Q ss_pred CchhHHHHH------hcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913 134 PEERIRAVE------TGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 134 ~q~~~~~~~------~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll 198 (275)
||+...++. -.+.+..+..+..+. ....+..+. ...+++..++| |+|++||+++||+++ +|+|++
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 999753322 224444443222111 111222221 24577888888 999999999999999 899999
Q ss_pred Ee-CCCCCCcc
Q 023913 199 ID-VSGGDKIP 208 (275)
Q Consensus 199 lD-~t~g~d~~ 208 (275)
+| +|+.+|..
T Consensus 423 ~deatsaldt~ 433 (497)
T COG5265 423 LDEATSALDTH 433 (497)
T ss_pred EehhhhHhhhh
Confidence 99 67777753
No 329
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8e-19 Score=144.63 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=82.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
.++.+.+....+|++++|+|+||||||||+++|+|+++++ |++.+.+.+........+.+.++|++|
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------ 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence 4555555566889999999999999999999999999998 999998877655444455566777765
Q ss_pred ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
. |+||+||++++++++ +|+++++| |++++|..
T Consensus 81 -------------------------l----S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 81 -------------------------L----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred -------------------------C----CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 2 999999999999999 89999999 88888854
No 330
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=1e-18 Score=187.35 Aligned_cols=151 Identities=17% Similarity=0.087 Sum_probs=108.9
Q ss_pred ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +.+ ++.+.++...+|+.++|+|++|||||||+++|+|++++.|+|.+++.|+.+.....++++++|+
T Consensus 1221 ~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271 1221 QGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred EEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEE
Confidence 778888876 434 4445555667799999999999999999999999997459999999999988888999999999
Q ss_pred CchhHHHH---HhcCCCccc-hHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEEE
Q 023913 134 PEERIRAV---ETGGCPHAA-IREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 134 ~q~~~~~~---~~~~~~~~~-~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlll 199 (275)
||++..+. ..+..+... ..+.+..+.+ .|..+. ...+++..+.| |+||+||++|||||+ +++|+||
T Consensus 1298 pQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271 1298 PQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred eCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 99984211 001111111 1111211111 112221 12456777766 999999999999999 8999999
Q ss_pred e-CCCCCCcc
Q 023913 200 D-VSGGDKIP 208 (275)
Q Consensus 200 D-~t~g~d~~ 208 (275)
| ||+.+|..
T Consensus 1378 DEaTS~lD~~ 1387 (1490)
T TIGR01271 1378 DEPSAHLDPV 1387 (1490)
T ss_pred eCCcccCCHH
Confidence 9 88888753
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=99.77 E-value=3.1e-19 Score=175.69 Aligned_cols=144 Identities=17% Similarity=0.070 Sum_probs=94.9
Q ss_pred CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-----------EEeccCCCCChHHHH---
Q 023913 64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL--- 127 (275)
Q Consensus 64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-----------i~~~d~~~~~~~~~~--- 127 (275)
+|+... ++.+. ....+|++++|+|||||||||||++|+|+++|+ |+|. +.+.++.... ..+.
T Consensus 82 ~yg~~~~~L~~l-~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~-~~~~~~~ 159 (590)
T PRK13409 82 RYGVNGFKLYGL-PIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF-KKLYNGE 159 (590)
T ss_pred EecCCceeEecC-CcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH-HHHhccC
Confidence 565543 44444 467789999999999999999999999999998 9986 5555543211 1111
Q ss_pred HhccccCchhHHHHHh-cC--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 128 MRNGALPEERIRAVET-GG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 128 ~~ig~v~q~~~~~~~~-~~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
..+++.+|.......+ .+ ............+.+.++.+......++.+.+ |+||+||++||++|+ +|+++||| |
T Consensus 160 ~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEP 239 (590)
T PRK13409 160 IKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239 (590)
T ss_pred cceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 1245555543211111 00 00000111122344566777666566777777 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 240 ts~LD~~~ 247 (590)
T PRK13409 240 TSYLDIRQ 247 (590)
T ss_pred CCCCCHHH
Confidence 99998653
No 332
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.1e-19 Score=175.20 Aligned_cols=136 Identities=16% Similarity=0.063 Sum_probs=94.0
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-HH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-AV 141 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~~ 141 (275)
+|+++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+. +.+||++|++.. +.
T Consensus 328 ~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~ 396 (530)
T PRK15064 328 GFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFE 396 (530)
T ss_pred eeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCC
Confidence 344455555666667889999999999999999999999999998 99886541 358898887420 00
Q ss_pred -HhcCCCcc----chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913 142 -ETGGCPHA----AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK 210 (275)
Q Consensus 142 -~~~~~~~~----~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~ 210 (275)
..+...+. ........+...|+.+... ...+..+.+ |+||+||++||++|+ +|.|+|+| |++++|....
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI 474 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 00000000 0000112234456666542 345666667 999999999999999 99999999 9999997543
No 333
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.8e-18 Score=143.87 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=98.4
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--HHH--h
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--AVE--T 143 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--~~~--~ 143 (275)
.++..+++...+|..++|+|.||||||||.++|+|+++|+ |+|.+++....-.+-..+.+.|-++||++.. +.. .
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 3666667777889999999999999999999999999999 9999988776543334455678999999741 111 1
Q ss_pred cC--------CCccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 144 GG--------CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 144 ~~--------~~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
|- ....+..+....+.+.|..+++... .++.+.. |.||+||+++||||+ +|.|+|.| +.+++|.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~ 182 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccH
Confidence 10 0111112223445556666665443 3334444 999999999999998 99999999 6666664
No 334
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.7e-18 Score=141.86 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc-----CCCCChHHHH----Hhcccc
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEFL----MRNGAL 133 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d-----~~~~~~~~~~----~~ig~v 133 (275)
+|+.++...++++...+||+.+|+|.+||||||||++|++-+.|+ |.+.+...+ +..+..++.+ ..-||+
T Consensus 15 ~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~V 94 (258)
T COG4107 15 LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV 94 (258)
T ss_pred hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhcccee
Confidence 677888888998889999999999999999999999999999999 999988743 2233333332 247899
Q ss_pred CchhHHHH---------------HhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-Cce
Q 023913 134 PEERIRAV---------------ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 134 ~q~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~ 195 (275)
-|++..-+ ..+...+..++ +.+.+.|+++... ...|..+.. |+||+||+.|||.|. .|.
T Consensus 95 hQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR---~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~Pr 171 (258)
T COG4107 95 HQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIR---AEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR 171 (258)
T ss_pred ecCccccceeeeccCCccchhHHhhhhhhhhhHH---HHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCc
Confidence 98873211 12222222222 2334566665443 245555555 999999999999999 899
Q ss_pred EEEEe-CCCCCCcc
Q 023913 196 IYIID-VSGGDKIP 208 (275)
Q Consensus 196 vlllD-~t~g~d~~ 208 (275)
++++| ||.|+|..
T Consensus 172 LvfMDEPTGGLDVS 185 (258)
T COG4107 172 LVFMDEPTGGLDVS 185 (258)
T ss_pred eEEecCCCCCcchh
Confidence 99999 88888864
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.7e-19 Score=176.90 Aligned_cols=145 Identities=15% Similarity=0.033 Sum_probs=94.1
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc----CCCCChHHHHHhccccCchhHH
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND----IFTKEDGEFLMRNGALPEERIR 139 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d----~~~~~~~~~~~~ig~v~q~~~~ 139 (275)
|+++.++.+.++...+|++++|+|+|||||||||++|+|+++|+ |.|.+.+.. +.+.........++|+++....
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 44556666666777889999999999999999999999999998 999876542 0110100012235555553211
Q ss_pred HHHhcC-------CCc----cchH---------HHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913 140 AVETGG-------CPH----AAIR---------EDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 140 ~~~~~~-------~~~----~~~~---------~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v 196 (275)
+..+.. ... .... .....+...|+.++.. ...+..+.+ |+||+||++||++|+ +|+|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~l 170 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDL 170 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCE
Confidence 110000 000 0000 0112334466666654 345667777 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+||| ||+++|...
T Consensus 171 LLLDEPtn~LD~~~ 184 (638)
T PRK10636 171 LLLDEPTNHLDLDA 184 (638)
T ss_pred EEEcCCCCcCCHHH
Confidence 9999 999998654
No 336
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.77 E-value=1.5e-18 Score=172.81 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=102.3
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH------
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~------ 138 (275)
.+.+.++...+|++++|+|+||||||||+++|+|+++|+ |++.+++.++......++ ++.++|++|++.
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 102 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT 102 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence 455555566889999999999999999999999999998 999999988776554433 356999999862
Q ss_pred --HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.... .....+....+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |+.++|...
T Consensus 103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 111111000 011112223445566666665556666667 999999999999999 89999999 899998654
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=1.2e-18 Score=170.92 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-H----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-I---- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~---- 138 (275)
|+++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+ +.+ ..+||++|++ .
T Consensus 334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~----------~~i~~v~q~~~~~~~~ 402 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET----------VKLAYVDQSRDALDPN 402 (556)
T ss_pred ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc----------eEEEEEeCchhhcCCC
Confidence 44455666666667889999999999999999999999999998 99976 321 1488999874 1
Q ss_pred ----HHHHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.+.. ...............++.+.... ..+..+.+ |+||+||++||++++ +|.++||| |++++|...
T Consensus 403 ~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 480 (556)
T PRK11819 403 KTVWEEISGGL-DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480 (556)
T ss_pred CCHHHHHHhhc-ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1111111 00000000111233566665542 34666677 999999999999999 99999999 999999754
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=1.2e-18 Score=170.70 Aligned_cols=133 Identities=12% Similarity=0.083 Sum_probs=92.8
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|+++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+ +.+ ..+||++|++.
T Consensus 332 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~----------~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET----------VKLAYVDQSRDALDPN 400 (552)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc----------eEEEEEeCCccccCCC
Confidence 44455566666667889999999999999999999999999998 99976 322 15889888741
Q ss_pred ----HHHHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++..+.... ............++.+.... ..+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 401 ~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 401 KTVWEEISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred CcHHHHHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 1111111000 00000111234566665532 34666667 999999999999999 99999999 999999754
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=5.1e-19 Score=173.30 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=91.3
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
+.++.|++ ++.++.+.++...+|++++|+|+|||||||||++|+|+++|+ |.|.+.+ ...+||++
T Consensus 9 nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v~ 74 (552)
T TIGR03719 9 RVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYLP 74 (552)
T ss_pred eEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEe
Confidence 34444542 344555666667889999999999999999999999999998 9987642 13588888
Q ss_pred chhH--------HHHHhcCCCc---------------cchHH---------H-------------HHHHHHHHHHhhccc
Q 023913 135 EERI--------RAVETGGCPH---------------AAIRE---------D-------------ISINLGPLEELSNLF 169 (275)
Q Consensus 135 q~~~--------~~~~~~~~~~---------------~~~~~---------~-------------~~~~~~~L~~l~~~~ 169 (275)
|++. +++.++.... ....+ . ...+.+.++.+...
T Consensus 75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~- 153 (552)
T TIGR03719 75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP- 153 (552)
T ss_pred ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-
Confidence 8752 1221111000 00000 0 01112233333332
Q ss_pred cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 170 KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 170 ~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..+..+.+ |+||+||++||++|+ +|+++||| |++++|...
T Consensus 154 ~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~ 196 (552)
T TIGR03719 154 PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196 (552)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHH
Confidence 23555666 999999999999999 89999999 899988654
No 340
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=144.18 Aligned_cols=136 Identities=17% Similarity=0.111 Sum_probs=96.3
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh--------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-------- 137 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-------- 137 (275)
++....+.++...+|+++.|.|||||||||||++|+|+++|+ |+|.+.+..+....+ ...+..-|+--.+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHHHhhccccccchhhH
Confidence 343444444556779999999999999999999999999999 999998877654332 2233333332221
Q ss_pred HHHHH----hcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 138 IRAVE----TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.++.. +.++ .....+.++++.+++....|..+.. |.||++|+++||-++ .++++||| |++.+|...
T Consensus 93 ~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g 165 (209)
T COG4133 93 LENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG 165 (209)
T ss_pred HHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHH
Confidence 12211 1121 0112334578888888888888888 999999999999988 89999999 888888654
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=3.4e-18 Score=156.81 Aligned_cols=139 Identities=20% Similarity=0.163 Sum_probs=110.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChH---HHHHhccccCchhH-------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------- 138 (275)
+++...++...+|+.++|+|.+|||||||-.+|+++++++|.|.+.+.++...+.. .+++++-+|||||.
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 45556666678899999999999999999999999999999999999998866543 45678999999983
Q ss_pred ---HHHHhcCC---CccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 139 ---RAVETGGC---PHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 139 ---~~~~~~~~---~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+.+.-+.. +..+..+...++.++|+++++.. ..++++-| ||||+||++||||++ .|.+++|| ||+.+|.
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 12222222 22334455567778899887765 46788888 999999999999999 99999999 8888774
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.76 E-value=1.5e-18 Score=172.58 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=92.5
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|+++.++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+ +..+ .+||++|+..
T Consensus 329 ~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~~~ 397 (635)
T PRK11147 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELDPE 397 (635)
T ss_pred ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccCCC
Confidence 44455556666667889999999999999999999999999998 99876 4321 4788888631
Q ss_pred ----HHHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ----RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++... +...........+...|..+... ...+..+.+ |+||+||++||++|+ +|.++||| ||+++|...
T Consensus 398 ~tv~e~l~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 398 KTVMDNLAEG-KQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred CCHHHHHHhh-cccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 122211 11110000112234456555443 234566666 999999999999999 89999999 999998754
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=2.7e-18 Score=146.07 Aligned_cols=137 Identities=16% Similarity=0.060 Sum_probs=98.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~ 146 (275)
.+++...+....+|+++.|+|.||||||||+|.|+|.+.|+ |+|.+++.|+.......+...++-|+|+| ..+-|
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp----~~gt~ 94 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDP----LAGTA 94 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcch----hhCCc
Confidence 33444444556779999999999999999999999999999 99999999998887777777788899987 23334
Q ss_pred CccchHHHHH---------------------HHHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeC
Q 023913 147 PHAAIREDIS---------------------INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV 201 (275)
Q Consensus 147 ~~~~~~~~~~---------------------~~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~ 201 (275)
+..++.+++. ...+.+..+ +.....+..+.- ||||||.++++.|.+ .|+|++||+
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 4444333221 112223332 222333444444 999999999999988 899999995
Q ss_pred -CCCCCcc
Q 023913 202 -SGGDKIP 208 (275)
Q Consensus 202 -t~g~d~~ 208 (275)
|+.+|+.
T Consensus 175 HTAALDPk 182 (263)
T COG1101 175 HTAALDPK 182 (263)
T ss_pred hhhcCCcc
Confidence 6667754
No 344
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=1.7e-18 Score=152.39 Aligned_cols=112 Identities=19% Similarity=0.082 Sum_probs=88.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
.++.++++...+|++++|+|.+|||||||-++|+|+++|+ |+|.+.+.++......+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~---------------------- 84 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEE---------------------- 84 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhH----------------------
Confidence 5666777777889999999999999999999999999999 99999998865433111
Q ss_pred ccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 148 HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
....+.+.|+.++... ...+...| ||||+||+.|||||+ +|.++++| |++.+|..
T Consensus 85 ------~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 85 ------RRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred ------HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 1123344566655433 45667777 999999999999999 99999999 77888764
No 345
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.76 E-value=1.6e-18 Score=154.87 Aligned_cols=135 Identities=15% Similarity=-0.018 Sum_probs=85.3
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-HHHHHhcC-
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGG- 145 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~- 145 (275)
.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.. ... ....++.++.. .+++....
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-~~~-----~~~~~~~~~~tv~enl~~~~~ 111 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-SVI-----AISAGLSGQLTGIENIEFKML 111 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-eEE-----ecccCCCCCCcHHHHHHHHHH
Confidence 3444555666789999999999999999999999999998 999876631 100 00112212111 12221110
Q ss_pred CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.......+........++.+......+..+.+ |+||+||++||++++ +|+++|+| |++++|...
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~ 178 (264)
T PRK13546 112 CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTF 178 (264)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 00111111112222344444444445556666 999999999999999 89999999 899998643
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=8.2e-19 Score=147.18 Aligned_cols=145 Identities=17% Similarity=0.021 Sum_probs=112.9
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe-ccCCCCChHHHHH-hccccCchhH--
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFLM-RNGALPEERI-- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~-~d~~~~~~~~~~~-~ig~v~q~~~-- 138 (275)
+|++.+++.+.++...+|+.-+|+|||||||||++..|+|..+|+ |++.+.+ .|+..++..++.+ .||--||.|.
T Consensus 14 sF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 14 SFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred EEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 677899999999999999999999999999999999999999999 9999999 7888777666554 4787888763
Q ss_pred ------HHHHhcCCCccchH---------HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 139 ------RAVETGGCPHAAIR---------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 139 ------~~~~~~~~~~~~~~---------~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+|+++..+....+. +...++.+.|...++....+..... |.||+|++.|...++ +|.++++|
T Consensus 94 e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDE 173 (249)
T COG4674 94 ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDE 173 (249)
T ss_pred hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecC
Confidence 44444433333221 1223455566666666666666666 999999999998888 89999999
Q ss_pred CCCCCCcc
Q 023913 201 VSGGDKIP 208 (275)
Q Consensus 201 ~t~g~d~~ 208 (275)
|.+|+...
T Consensus 174 PvAGMTd~ 181 (249)
T COG4674 174 PVAGMTDA 181 (249)
T ss_pred ccCCCcHH
Confidence 88887543
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.2e-18 Score=173.36 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=93.2
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~ 142 (275)
.|+++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+... .++||++|+......
T Consensus 321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~ 389 (638)
T PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLR 389 (638)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCC
Confidence 344455566666667889999999999999999999999999998 99877421 258888886321100
Q ss_pred h--cCCCcc---chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 143 T--GGCPHA---AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 143 ~--~~~~~~---~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
. ....+. ........+...|..+.... ..+..+.+ |+||+||++||++|+ +|.|+||| ||+++|...
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~ 465 (638)
T PRK10636 390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465 (638)
T ss_pred ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 0 000000 00011123344666665532 34556666 999999999999999 89999999 999998754
No 348
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=4.2e-18 Score=153.57 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=82.4
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (275)
+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+ .++|++|++. +
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~e 116 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKE 116 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCcccccccCHHH
Confidence 44555666666889999999999999999999999999998 9988754 2677777652 1
Q ss_pred HHHhcCCCccch--HHHHHH--HHHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPHAAI--REDISI--NLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~--~~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.++ +..... .+.+.. ....+..+.... ..+....+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 117 nl~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~ 194 (282)
T cd03291 117 NIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred Hhhcc-cccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 11111 110000 000000 011111111000 11112234 999999999999999 89999999 899998643
No 349
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.75 E-value=3.4e-18 Score=149.82 Aligned_cols=184 Identities=25% Similarity=0.273 Sum_probs=121.9
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchH-----
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR----- 152 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~----- 152 (275)
.+..++||+||+|||||||+..|...+... .+|.+...|+... ..-|.+..|.+++......+...++
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp------~tGGAlLGDRiRM~~~~~d~~vfIRS~atR 100 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP------FTGGALLGDRIRMQELSRDPGVFIRSMATR 100 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG------CC---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC------CCCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence 457899999999999999999999988766 6899999888642 2345666677776665544443321
Q ss_pred ----HHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCC
Q 023913 153 ----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 228 (275)
Q Consensus 153 ----~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl 228 (275)
.....+.+.+.-+ ...++|.+++|+.|.-|-..-...++|..++++=|..|++.|..+...++.||++|+||+|+
T Consensus 101 G~lGGls~~t~~~v~ll-~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~ 179 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLL-DAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADR 179 (266)
T ss_dssp SSHHHHHHHHHHHHHHH-HHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SH
T ss_pred CCCCCccHhHHHHHHHH-HHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCCh
Confidence 1112223333322 44579999999888777765556677999999999999999998888899999999999996
Q ss_pred CccchhhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913 229 ASAIGADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.... .....++..+....+ ..||+.+|+.+++|++++++.+
T Consensus 180 ~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i 225 (266)
T PF03308_consen 180 PGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAI 225 (266)
T ss_dssp HHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 5441 233444555543332 3689999999999999998754
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=1.3e-18 Score=174.43 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=94.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++ ...++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.. ..++||+
T Consensus 512 ~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv 577 (718)
T PLN03073 512 SDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVF 577 (718)
T ss_pred EeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEE
Confidence 344455543 333555666667889999999999999999999999999998 9987632 1358888
Q ss_pred CchhHH------HHH--h-cCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 134 PEERIR------AVE--T-GGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 134 ~q~~~~------~~~--~-~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+|+... +.. + ...+... ...+...|+.+.... ..+..+.+ |+||+||++||++|+ +|.++|||
T Consensus 578 ~Q~~~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 578 SQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred eccccccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 886421 100 0 0001100 122344666665542 34555666 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
||+++|...
T Consensus 654 PT~~LD~~s 662 (718)
T PLN03073 654 PSNHLDLDA 662 (718)
T ss_pred CCCCCCHHH
Confidence 999999754
No 351
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.75 E-value=4.4e-18 Score=168.70 Aligned_cols=139 Identities=19% Similarity=0.093 Sum_probs=102.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
++..+.+.+....+|++++|+|||||||||||++|+|..++ +|+|.+++.++. ...+++.+||++|++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 34455566667788999999999999999999999998876 388998887653 3456778999999863
Q ss_pred ----HHHHhcCCCc----cchHHHHHHHHHHHHHhhcccccccccc------c-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 139 ----RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLC------E-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 139 ----~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~------e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
+++.++.... ....+....+.+.++.++.....+..+. . |+||+||+.||++|+ +|+|+++| |
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 2232221111 1112223345567777766665666654 3 999999999999999 99999999 9
Q ss_pred CCCCCcc
Q 023913 202 SGGDKIP 208 (275)
Q Consensus 202 t~g~d~~ 208 (275)
++|+|..
T Consensus 194 tsgLD~~ 200 (617)
T TIGR00955 194 TSGLDSF 200 (617)
T ss_pred CcchhHH
Confidence 9998864
No 352
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.75 E-value=3.1e-18 Score=164.40 Aligned_cols=134 Identities=15% Similarity=-0.012 Sum_probs=89.0
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-HHHHHhcCC-
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC- 146 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~~- 146 (275)
++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+.+.+.. .. ...++.++.. .+++.+...
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-i~-----~~~~l~~~lTV~EnL~l~~~~ 112 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-IA-----ISSGLNGQLTGIENIELKGLM 112 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-EE-----eccccCCCCcHHHHHHhhhhh
Confidence 455565666889999999999999999999999999998 99988765411 00 0112222212 122222111
Q ss_pred CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
......+....+...++.+......+..+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 1111111122233455655555555666666 999999999999999 99999999 899998753
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.75 E-value=3.5e-18 Score=170.52 Aligned_cols=137 Identities=14% Similarity=0.065 Sum_probs=92.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.||+ ++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |++.+.. ++.++|+
T Consensus 455 ~nv~~~~~~---~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v 520 (659)
T TIGR00954 455 ENIPLVTPN---GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYV 520 (659)
T ss_pred EeeEEECCC---CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEE
Confidence 566676765 445565666667889999999999999999999999999988 8876531 3468999
Q ss_pred CchhH-------HHHHhcCCC-----ccchHHHHHHHHHHHHHhhcccc------cccc---ccc-ChhHHHHHHHHHHh
Q 023913 134 PEERI-------RAVETGGCP-----HAAIREDISINLGPLEELSNLFK------ADLL---LCE-SGGDNLAANFSREL 191 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~L~~l~~~~~------~d~~---~~e-S~G~~q~~~laral 191 (275)
||++. +++..+... ..... ..+.+.++.+..... ++.. ..+ |+||+||++|||++
T Consensus 521 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSD---KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred CCCCCCCCcCHHHHHhcCCChhhhhccCCCH---HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 99862 233222110 00011 112233433332221 1111 123 99999999999999
Q ss_pred c-CceEEEEe-CCCCCCcc
Q 023913 192 A-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 192 ~-~~~vlllD-~t~g~d~~ 208 (275)
+ +|+++|+| |++++|..
T Consensus 598 ~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVD 616 (659)
T ss_pred HcCCCEEEEeCCccCCCHH
Confidence 9 89999999 89898864
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=1.2e-18 Score=171.58 Aligned_cols=122 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~ 141 (275)
+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+. .+++|+||+.. +++
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHH
Confidence 33344445779999999999999999999999999998 988764 14788888742 111
Q ss_pred HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.... .... ......+.|+.+......+..+.+ |+||+||++||++|+ +|+|+||| |++++|...
T Consensus 422 ~~~~-~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSIT-DDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHh-hhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 1110 0000 001234466666665556777777 999999999999999 89999999 999999754
No 355
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.73 E-value=9.2e-18 Score=145.40 Aligned_cols=130 Identities=15% Similarity=-0.042 Sum_probs=78.8
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-EEeccCCCCChHHHHHhccccCchh-HHHHHhcCC-
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC- 146 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~~- 146 (275)
+.+.++...+|++++|+||||||||||+++|+|+++|+ |+|. +.+.... .. ....+.+.-. .+++.+...
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANSFILPGLTGEENARMMASL 76 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----cccccCCcCcHHHHHHHHHHH
Confidence 34455556779999999999999999999999999998 9986 4433221 10 0111212111 122222110
Q ss_pred CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
......+.... .+..+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus 77 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 77 YGLDGDEFSHF---CYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred cCCCHHHHHHH---HHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 00111111111 11122223334555666 999999999999999 99999999 677777543
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=9.8e-18 Score=162.23 Aligned_cols=134 Identities=18% Similarity=0.126 Sum_probs=90.5
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH--
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-- 140 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~-- 140 (275)
.|+++....+.++...+|+++||+|+|||||||||++|+|.+.|+ |.|....+ .+++|++|++...
T Consensus 12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQEPPLDPE 80 (530)
T ss_pred eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCCCCcCCC
Confidence 344676777777778889999999999999999999999999998 98876543 1356666654211
Q ss_pred ------HHhcCCCccchH------------------HH-------------HHHHHHHHHHhhccccccccccc-ChhHH
Q 023913 141 ------VETGGCPHAAIR------------------ED-------------ISINLGPLEELSNLFKADLLLCE-SGGDN 182 (275)
Q Consensus 141 ------~~~~~~~~~~~~------------------~~-------------~~~~~~~L~~l~~~~~~d~~~~e-S~G~~ 182 (275)
+..+........ .. ...+...|..++.... +..+.+ |||++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r 159 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWR 159 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHH
Confidence 111000000000 00 0112223444433333 667777 99999
Q ss_pred HHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 183 LAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 183 q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.|++||++|. +|+++||| ||+.+|...
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~ 188 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLES 188 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHH
Confidence 9999999999 89999999 999998754
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.73 E-value=9.8e-18 Score=178.65 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=101.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
+.++.+.+....+|++++|+|||||||||||++|+|.++ ++ |+|.+++.++. ..+++.+||++|++.
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~ 851 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTS 851 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCC
Confidence 345556666678899999999999999999999999987 67 99999887763 245678999999752
Q ss_pred ---HHHHhcCC---Cc-cchHHHHHHHHHHHHHhhcccccccccc----c-ChhHHHHHHHHHHhc-Cce-EEEEe-CCC
Q 023913 139 ---RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC----E-SGGDNLAANFSRELA-DYI-IYIID-VSG 203 (275)
Q Consensus 139 ---~~~~~~~~---~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~----e-S~G~~q~~~laral~-~~~-vlllD-~t~ 203 (275)
+++.+... +. ....+....+.+.++.+......+..+. + |+||+||++||++|+ +|+ |++|| ||+
T Consensus 852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTs 931 (1394)
T TIGR00956 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTS 931 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCC
Confidence 22222111 11 1111222344557777766666677765 4 999999999999999 895 99999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
|+|...
T Consensus 932 gLD~~~ 937 (1394)
T TIGR00956 932 GLDSQT 937 (1394)
T ss_pred CCCHHH
Confidence 998643
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.1e-17 Score=140.83 Aligned_cols=140 Identities=16% Similarity=0.034 Sum_probs=102.0
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHHH-hccccCchhHH-----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIR----- 139 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~----- 139 (275)
+.+...+....+||+.+|+||||||||||.+.|+|.- ..+ |+|.+.+.|+....+.++.+ .+..-+|.|.+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~ 97 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT 97 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence 5555666677889999999999999999999999963 457 99999999999888766655 46667888732
Q ss_pred ---HHHh--cC---CCccchHHHHHHHHHHHHHhhccc-cccccccc--ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 140 ---AVET--GG---CPHAAIREDISINLGPLEELSNLF-KADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 140 ---~~~~--~~---~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e--S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
++.. +. .... ..+......+.++.+.... ..++.+.+ |||+++|..|+..++ +|+++||| |-+|+|
T Consensus 98 ~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 98 NSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred HHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 1111 10 0001 1122233444555555444 56777777 999999999999887 99999999 788998
Q ss_pred ccc
Q 023913 207 IPR 209 (275)
Q Consensus 207 ~~~ 209 (275)
+.+
T Consensus 177 Ida 179 (251)
T COG0396 177 IDA 179 (251)
T ss_pred HHH
Confidence 754
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.72 E-value=1.4e-17 Score=170.84 Aligned_cols=179 Identities=16% Similarity=0.056 Sum_probs=129.2
Q ss_pred CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhccccCchhHHH
Q 023913 64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRA 140 (275)
Q Consensus 64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~ 140 (275)
.|+.+. |+.+.+.-.++||++|++|+|||||||++++|.|..+|+ |++.+.+.++.... ..+.++.+||+||.....
T Consensus 573 ~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~ 652 (885)
T KOG0059|consen 573 VYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW 652 (885)
T ss_pred eecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhh
Confidence 444454 666666677889999999999999999999999999999 99999888887543 345778899999997655
Q ss_pred HHhcCCCccchH--------HHH-HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 141 VETGGCPHAAIR--------EDI-SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 141 ~~~~~~~~~~~~--------~~~-~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
..+++.+++.+. .++ ..+...++.+.+.+..+..+.. |+|+++|+.+|.+++ +|++++|| |++|+|+.
T Consensus 653 ~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~ 732 (885)
T KOG0059|consen 653 EELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732 (885)
T ss_pred hhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 555554444321 122 2344567777777777777666 999999999999999 89999999 89999986
Q ss_pred cccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcC
Q 023913 209 RKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMR 247 (275)
Q Consensus 209 ~~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~ 247 (275)
.+.. ...+....||++. +..++.|.+..++.-+.
T Consensus 733 arr~lW~ii~~~~k~g~aiiLTS-----HsMeE~EaLCtR~aImv 772 (885)
T KOG0059|consen 733 ARRHLWDIIARLRKNGKAIILTS-----HSMEEAEALCTRTAIMV 772 (885)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHHhhhhheee
Confidence 5431 1122222677764 33355666666654443
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=1.8e-17 Score=139.52 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=77.4
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCcc
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~ 149 (275)
++.+.++...+|++++|+|||||||||||+++++ ..|++.+.+... . ..++.++|++|
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~----~~~~~~~~~~q-------------- 67 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-K----FSRNKLIFIDQ-------------- 67 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-c----cccccEEEEhH--------------
Confidence 4444555567799999999999999999999863 348887654321 1 11234667655
Q ss_pred chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C--ceEEEEe-CCCCCCccc
Q 023913 150 AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 150 ~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~--~~vlllD-~t~g~d~~~ 209 (275)
.+.++.+.... ..+..+.+ |+||+||+++|++++ + |+++|+| |++++|...
T Consensus 68 ---------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 ---------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred ---------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 12455554433 24555555 999999999999999 8 9999999 888888654
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=2e-17 Score=172.18 Aligned_cols=151 Identities=18% Similarity=0.146 Sum_probs=113.8
Q ss_pred ccccccCCCCCCCCCCcccccc-ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRN-FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.+..+.|.. +-+.+++..+ ...+||.|||+|+.|||||||+++|.++..|. |+|.+++.|+.+..-.++|+++++
T Consensus 1142 ~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1142 EDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred EEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence 566666666 4455555554 55679999999999999999999999999988 999999999999999999999999
Q ss_pred cCchhHHHH---HhcCCCccchHH-HHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913 133 LPEERIRAV---ETGGCPHAAIRE-DISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 133 v~q~~~~~~---~~~~~~~~~~~~-~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll 198 (275)
+||+|..+. ..+.-|++...+ ++..+++ .|..+. ...++|..+.| |.||||.+++||||+ +.+|++
T Consensus 1219 IPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv 1298 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV 1298 (1381)
T ss_pred eCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE
Confidence 999986432 234444443321 2222222 233322 23457777877 999999999999999 899999
Q ss_pred Ee-CCCCCCcc
Q 023913 199 ID-VSGGDKIP 208 (275)
Q Consensus 199 lD-~t~g~d~~ 208 (275)
+| +|+..|..
T Consensus 1299 LDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1299 LDEATASVDPE 1309 (1381)
T ss_pred EecccccCChH
Confidence 99 77777754
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.71 E-value=9.4e-17 Score=142.63 Aligned_cols=185 Identities=22% Similarity=0.218 Sum_probs=134.5
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHH--
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE-- 153 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~-- 153 (275)
...+-.++||+|++|||||||+..|...+... -+|+++..|++.. ..-|.+..+..+|..+...+...++.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp------~TGGsiLGDRiRM~~~~~~~~vFiRs~~ 120 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP------FTGGSILGDRIRMQRLAVDPGVFIRSSP 120 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC------CCCccccccHhhHHhhccCCCeEEeecC
Confidence 34456799999999999999999999988777 4699999998752 23466667777777665444433211
Q ss_pred -------HHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecC
Q 023913 154 -------DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKT 226 (275)
Q Consensus 154 -------~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~ 226 (275)
.-....+.+.-+ ...++|.+++|+.|.-|-..-...++|-.++++=|..|++.|..+..+++++|++|+||.
T Consensus 121 srG~lGGlS~at~~~i~~l-dAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKa 199 (323)
T COG1703 121 SRGTLGGLSRATREAIKLL-DAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKA 199 (323)
T ss_pred CCccchhhhHHHHHHHHHH-HhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEecc
Confidence 112223333333 456899999998888887665556778889999999999999988889999999999999
Q ss_pred CCCccchhhHHHHHHHHHhcC-------CCCCEEEEEecCCcCHHHHhcc
Q 023913 227 DLASAIGADLAVMERDALRMR-------DGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 227 Dl~~~~~~~~~~~~~~i~~~~-------~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
|+-... .....+...++... ...|++.+|+..|+|+++|++.
T Consensus 200 D~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~a 248 (323)
T COG1703 200 DRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDA 248 (323)
T ss_pred ChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHH
Confidence 965442 12223333333331 2468999999999999999874
No 363
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.71 E-value=8.6e-18 Score=167.16 Aligned_cols=143 Identities=18% Similarity=0.061 Sum_probs=87.5
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC-CCCChHHHHHhccccCchhH----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~-~~~~~~~~~~~ig~v~q~~~---- 138 (275)
|+++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+... ...........+++++|...
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~ 92 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIE 92 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhH
Confidence 33455555666667889999999999999999999999999998 9998764210 00000000111233333210
Q ss_pred -------HHHHhc---CCC----ccc----hH---------HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHH
Q 023913 139 -------RAVETG---GCP----HAA----IR---------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE 190 (275)
Q Consensus 139 -------~~~~~~---~~~----~~~----~~---------~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~lara 190 (275)
.+..+. ... ... .. .....+...++.++.. .++.+.+ |+||+||++||++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAra 170 (635)
T PRK11147 93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRA 170 (635)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHH
Confidence 000000 000 000 00 0012233455555543 3566666 9999999999999
Q ss_pred hc-CceEEEEe-CCCCCCccc
Q 023913 191 LA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 191 l~-~~~vlllD-~t~g~d~~~ 209 (275)
|+ +|+|+||| |++++|...
T Consensus 171 L~~~P~lLLLDEPt~~LD~~~ 191 (635)
T PRK11147 171 LVSNPDVLLLDEPTNHLDIET 191 (635)
T ss_pred HhcCCCEEEEcCCCCccCHHH
Confidence 99 89999999 999998754
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=5.1e-17 Score=131.34 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=106.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCCChHHHHHhc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRN 130 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~~~~~~~~~i 130 (275)
+++++..+| +..+-+.++...+||++-|+||+|||||||+.-+.|.+.++ |++.+.+.++.... .-.|.+
T Consensus 6 ~nvsl~l~g----~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP--a~qRq~ 79 (213)
T COG4136 6 KNVSLRLPG----SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP--AAQRQI 79 (213)
T ss_pred eeeeecCCC----ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc--hhhhhe
Confidence 445555555 44455677778889999999999999999999999998863 88888887775443 234679
Q ss_pred cccCchhHHHHHhcCCCcc------chH--HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 131 GALPEERIRAVETGGCPHA------AIR--EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 131 g~v~q~~~~~~~~~~~~~~------~~~--~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
|+++|++..+..++...+. +++ .....+..+|++.++...++.-... ||||+-|+++.|+|+ .|+.+++|
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 9999998655444332222 122 2223345578877776666665555 999999999999998 99999999
Q ss_pred -CCCCCCc
Q 023913 201 -VSGGDKI 207 (275)
Q Consensus 201 -~t~g~d~ 207 (275)
|.+.+|.
T Consensus 160 EPFS~LD~ 167 (213)
T COG4136 160 EPFSRLDV 167 (213)
T ss_pred CchhHHHH
Confidence 6666654
No 365
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=5.3e-17 Score=174.33 Aligned_cols=138 Identities=18% Similarity=0.100 Sum_probs=95.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++. .+...+.+.++..++|+.++|+|++|||||||+++|+|.++|+ |++.. +++.++|+
T Consensus 618 ~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~------------~~~~Iayv 684 (1495)
T PLN03232 618 KNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGSVAYV 684 (1495)
T ss_pred EeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE------------ecCcEEEE
Confidence 6677888751 0123445555566789999999999999999999999999998 77642 23578999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHH-Hhh-ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLE-ELS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~-~l~-~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
+|++. +|+.++. +. . .+....+.+ .+. .+. ...+.+..++| ||||+||++||||+. +|+|
T Consensus 685 ~Q~p~Lf~gTIreNI~fg~-~~-~-~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 761 (1495)
T PLN03232 685 PQVSWIFNATVRENILFGS-DF-E-SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI 761 (1495)
T ss_pred cCccccccccHHHHhhcCC-cc-C-HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99973 3444442 22 1 122222211 111 121 23456677777 999999999999999 8999
Q ss_pred EEEe-CCCCCCcc
Q 023913 197 YIID-VSGGDKIP 208 (275)
Q Consensus 197 lllD-~t~g~d~~ 208 (275)
+||| |++++|..
T Consensus 762 lLLDEptSaLD~~ 774 (1495)
T PLN03232 762 YIFDDPLSALDAH 774 (1495)
T ss_pred EEEcCCccccCHH
Confidence 9999 88888853
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.68 E-value=9.9e-17 Score=171.07 Aligned_cols=138 Identities=15% Similarity=0.054 Sum_probs=97.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+++.+.+....+|++++|+|||||||||||++|+|..++ . |+|.+.+.+.. ...+++.+||++|++.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCCcH
Confidence 455566666788999999999999999999999998764 4 88988776542 2345567999999852
Q ss_pred -HHHHhcC---CC-ccchHHHHHHHHHHHHHhhcccccccccc-----c-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 -RAVETGG---CP-HAAIREDISINLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 -~~~~~~~---~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~-----e-S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+++.+.. .+ .....+....+.+.++.+.+....+..+. . |+||+||+.||++|+ +|+|+++| ||+|+
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2222211 11 11112222334556666666555566552 3 999999999999999 99999999 99999
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|...
T Consensus 1051 D~~~ 1054 (1470)
T PLN03140 1051 DARA 1054 (1470)
T ss_pred CHHH
Confidence 8643
No 367
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.1e-16 Score=138.70 Aligned_cols=129 Identities=16% Similarity=0.038 Sum_probs=86.3
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-HHHHhc
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETG 144 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 144 (275)
...++.+.++...+|+.+||+|+|||||||||++|+|.++|+ |+|.+.+.- .. -+.-..|+.|+-.. +++.+.
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-~~----li~lg~Gf~pelTGreNi~l~ 113 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-AP----LIELGAGFDPELTGRENIYLR 113 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-eh----hhhcccCCCcccchHHHHHHH
Confidence 445666777777889999999999999999999999999999 999887632 11 12234666665432 333332
Q ss_pred CC-CccchHHHHHHHHHHHHHhh-ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeC
Q 023913 145 GC-PHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV 201 (275)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~ 201 (275)
+. .-++. +......+.+.+|. +....+..+.. |+||+-|++++-+.. +|+|+|+|.
T Consensus 114 ~~~~G~~~-~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE 173 (249)
T COG1134 114 GLILGLTR-KEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE 173 (249)
T ss_pred HHHhCccH-HHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence 22 11222 22222222333332 23345666666 999999999998887 999999994
No 368
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.68 E-value=1.2e-16 Score=171.99 Aligned_cols=135 Identities=17% Similarity=0.115 Sum_probs=91.7
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ .. .++.+.++..++|++++|+|+||||||||+++|+|+++|+ |+|.+.+ .++|
T Consensus 640 ~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 703 (1522)
T TIGR00957 640 HNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703 (1522)
T ss_pred EEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence 566677765 33 3455555566789999999999999999999999999998 9988753 4889
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH---HHHHhhcc-ccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG---PLEELSNL-FKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~---~L~~l~~~-~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
++|++. +++.++. +.. .+....+.+ ..+.+... .+.+..+.+ ||||+||++||||+. +|+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~-~~~--~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGK-ALN--EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EcCCccccCCcHHHHhhcCC-ccC--HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999863 2333322 111 111111111 12222221 223333333 999999999999999 999
Q ss_pred EEEEe-CCCCCCcc
Q 023913 196 IYIID-VSGGDKIP 208 (275)
Q Consensus 196 vlllD-~t~g~d~~ 208 (275)
++|+| |++++|..
T Consensus 781 illLDEp~saLD~~ 794 (1522)
T TIGR00957 781 IYLFDDPLSAVDAH 794 (1522)
T ss_pred EEEEcCCccccCHH
Confidence 99999 88888853
No 369
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.67 E-value=6.3e-17 Score=172.51 Aligned_cols=141 Identities=9% Similarity=-0.043 Sum_probs=97.2
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc----CCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l----~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
++++.+.+....+|++++|+||||||||||||+|+|.+ .|. |+|.+.+.++.... ...++.++|++|+..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 34555666667889999999999999999999999986 356 99999887664321 233456999999852
Q ss_pred ----HHHHhcCC---Cc-----cchHHHHHH-HHHHHHHhhccccccccc-----cc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 139 ----RAVETGGC---PH-----AAIREDISI-NLGPLEELSNLFKADLLL-----CE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 139 ----~~~~~~~~---~~-----~~~~~~~~~-~~~~L~~l~~~~~~d~~~-----~e-S~G~~q~~~laral~-~~~vll 198 (275)
+++.+... +. ....+.... ....++.+++....+..+ .. |+|||||+.||++|+ +|+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 23322211 10 111111112 233566666665555443 34 999999999999999 999999
Q ss_pred Ee-CCCCCCccc
Q 023913 199 ID-VSGGDKIPR 209 (275)
Q Consensus 199 lD-~t~g~d~~~ 209 (275)
+| |++|+|...
T Consensus 233 lDEPTsgLD~~~ 244 (1394)
T TIGR00956 233 WDNATRGLDSAT 244 (1394)
T ss_pred EeCCCCCcCHHH
Confidence 99 999998643
No 370
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.6e-16 Score=130.92 Aligned_cols=139 Identities=20% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCCccccccc-cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc----CCCCChHH----HHHhccccCchh
Q 023913 68 RAPPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND----IFTKEDGE----FLMRNGALPEER 137 (275)
Q Consensus 68 ~~~~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d----~~~~~~~~----~~~~ig~v~q~~ 137 (275)
+.+++...+| .+.||+++|-||+||||||||++|-+-|.|+ |+|.+--.. +....+.+ +++.+||++|.-
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 3345544444 5669999999999999999999999999999 999875432 22222322 234699999863
Q ss_pred H--------HH----HHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 138 I--------RA----VETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 138 ~--------~~----~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
. +. ....|.+. ......+...|.++.... .+...+.. |||++||+.|||.++ +.+|++|| |
T Consensus 103 RviPRV~aLdVvaePll~~gv~~---~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEP 179 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPR---EVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEP 179 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCH---HHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCC
Confidence 1 00 01111111 111123344566664443 23444555 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
|+.+|...
T Consensus 180 TasLDa~N 187 (235)
T COG4778 180 TASLDATN 187 (235)
T ss_pred cccccccc
Confidence 88888654
No 371
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.66 E-value=2.3e-16 Score=144.92 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=110.8
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCCChHHHHH-
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM- 128 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~~~~~~~~- 128 (275)
.+.|..++ +..+++.+.++...+||.++|+|.+|||||-..+.++++++. .|+|.+.|.++-...+.++++
T Consensus 13 sV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~i 90 (534)
T COG4172 13 SVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGV 90 (534)
T ss_pred EEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhh
Confidence 45566665 245566666677788999999999999999999999999873 379999999988777666654
Q ss_pred ---hccccCchhHHH--HH--hc-------CC-CccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHH
Q 023913 129 ---RNGALPEERIRA--VE--TG-------GC-PHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSR 189 (275)
Q Consensus 129 ---~ig~v~q~~~~~--~~--~~-------~~-~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~lar 189 (275)
+|+++||++..- .. .+ .+ ...+.++..+++++.|+.++... .++.++-| ||||+||++||.
T Consensus 91 RG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAM 170 (534)
T COG4172 91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAM 170 (534)
T ss_pred cccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHH
Confidence 699999998411 00 00 00 11122233345666777776654 45666777 999999999999
Q ss_pred Hhc-CceEEEEe-CCCCCCcc
Q 023913 190 ELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 190 al~-~~~vlllD-~t~g~d~~ 208 (275)
||+ +|+++|.| ||+.+|+.
T Consensus 171 ALan~P~lLIADEPTTALDVt 191 (534)
T COG4172 171 ALANEPDLLIADEPTTALDVT 191 (534)
T ss_pred HHcCCCCeEeecCCcchhhhh
Confidence 999 89999999 88888863
No 372
>PLN03130 ABC transporter C family member; Provisional
Probab=99.66 E-value=2.1e-16 Score=170.38 Aligned_cols=136 Identities=19% Similarity=0.131 Sum_probs=93.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|+.. .+...+.+.++..++|++++|+||+|||||||+++|+|.++|+ |+|.+ +..++|
T Consensus 618 ~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iay 683 (1622)
T PLN03130 618 KNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAY 683 (1622)
T ss_pred EeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEE
Confidence 6677888651 0123445555566789999999999999999999999999886 56652 346899
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHH-hh-ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEE-LS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~-l~-~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
++|++. +|+.++ .+.. .+....+.+ .|.. +. ...+.+..++| |||||||++||||+. +++
T Consensus 684 v~Q~p~LfngTIreNI~fg-~~~d--~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~ 760 (1622)
T PLN03130 684 VPQVSWIFNATVRDNILFG-SPFD--PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1622)
T ss_pred EcCccccCCCCHHHHHhCC-Cccc--HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 999973 334343 3321 122222211 1221 11 23455666766 999999999999999 899
Q ss_pred EEEEe-CCCCCCc
Q 023913 196 IYIID-VSGGDKI 207 (275)
Q Consensus 196 vlllD-~t~g~d~ 207 (275)
|+||| |++++|.
T Consensus 761 IlLLDEptSALD~ 773 (1622)
T PLN03130 761 VYIFDDPLSALDA 773 (1622)
T ss_pred EEEECCCccccCH
Confidence 99999 8888885
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=3.4e-16 Score=157.11 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=89.5
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc---CCC-CcEEEEeccCCCC--Ch------------HHH
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTK--ED------------GEF 126 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l---~~~-g~i~i~~~d~~~~--~~------------~~~ 126 (275)
|+++..+.+.++...+|++++|+|+|||||||||++|+|.. .|+ |+|.+...++... .. ..+
T Consensus 187 y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~ 266 (718)
T PLN03073 187 VGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLL 266 (718)
T ss_pred eCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHH
Confidence 33455555666667889999999999999999999999853 355 8998776543211 11 011
Q ss_pred HHhccccCchhHHHHH------hc----CCCccchHHHH----------------HHHHHHHHHhhcc-ccccccccc-C
Q 023913 127 LMRNGALPEERIRAVE------TG----GCPHAAIREDI----------------SINLGPLEELSNL-FKADLLLCE-S 178 (275)
Q Consensus 127 ~~~ig~v~q~~~~~~~------~~----~~~~~~~~~~~----------------~~~~~~L~~l~~~-~~~d~~~~e-S 178 (275)
.+.+++++|.+..... .. +.+.......+ ..+...|..++.. ...++.+.+ |
T Consensus 267 ~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LS 346 (718)
T PLN03073 267 EEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFS 346 (718)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCC
Confidence 2336677665422111 00 00000000001 1122234444432 223555666 9
Q ss_pred hhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 179 GGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 179 ~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+||+||++||++|+ +|.++||| |++++|...
T Consensus 347 gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~ 379 (718)
T PLN03073 347 GGWRMRIALARALFIEPDLLLLDEPTNHLDLHA 379 (718)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 99999999999999 89999999 999998654
No 374
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=4.1e-16 Score=154.16 Aligned_cols=139 Identities=21% Similarity=0.200 Sum_probs=103.3
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---C-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
++.+.+++....+|++.||+||.||||||||++|+|.... . |+|.+++.. ......++..|||.|+..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---CchhhhhheeEEEcccccccccc
Confidence 3444455556788999999999999999999999998764 3 889888733 234566778999999973
Q ss_pred ---HHHHhc---CCCc-cchHHHHHHHHHHHHHhhccccccccccc------ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 ---RAVETG---GCPH-AAIREDISINLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 ---~~~~~~---~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e------S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+.+... ..+. .+..+....+.+.+.++++..-.+.++.. |+|||+|+++|..++ +|.|+++| ||+
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 222211 1111 23344445667788888887767777752 999999999999999 99999999 999
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
|+|...
T Consensus 200 GLDS~s 205 (613)
T KOG0061|consen 200 GLDSFS 205 (613)
T ss_pred Ccchhh
Confidence 998643
No 375
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.64 E-value=6.5e-16 Score=165.88 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~ 140 (275)
.++.+.++...+|++++|+|||||||||||++|+|+++|+ |.|.+.+ .++|++|++. ++
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN 506 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN 506 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence 3455555666789999999999999999999999999998 9998754 3788888862 33
Q ss_pred HHhcCCCccchHHHHHHHHH--HHH-Hhhcc-cccccccc----c-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 141 VETGGCPHAAIREDISINLG--PLE-ELSNL-FKADLLLC----E-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~--~L~-~l~~~-~~~d~~~~----e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+.++.. ... +....+.+ .|. .+... .+....+. . |+||+||++||||++ +|+++||| |++++|..
T Consensus 507 I~~g~~-~~~--~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLS-YDE--YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccc-cch--HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 333321 110 11111111 121 11111 11222232 2 999999999999999 89999999 89998854
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.64 E-value=2e-15 Score=138.41 Aligned_cols=148 Identities=15% Similarity=0.026 Sum_probs=101.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|+. ..=-+--++....+||++.|+|.||||||||+++|.|+++|+ |+|.++++.+......+.++-++.+
T Consensus 326 rnvrfay~~---~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav 402 (546)
T COG4615 326 RNVRFAYQD---NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402 (546)
T ss_pred eeeeeccCc---ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence 555566665 111122334456779999999999999999999999999999 9999999999877788888888888
Q ss_pred CchhHHHHHh-cCCCccchHHHHHHHHHHHHHhhccc---cccccccc---ChhHHHHHHHHHHhc-CceEEEEeCCCCC
Q 023913 134 PEERIRAVET-GGCPHAAIREDISINLGPLEELSNLF---KADLLLCE---SGGDNLAANFSRELA-DYIIYIIDVSGGD 205 (275)
Q Consensus 134 ~q~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e---S~G~~q~~~laral~-~~~vlllD~t~g~ 205 (275)
+.|.-.+..+ ++....+. +.. ...|+++...+ -.+..+.. |.||++|+++.-|++ +.+|+++|+-..+
T Consensus 403 FsDyhLF~~ll~~e~~as~-q~i---~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD 478 (546)
T COG4615 403 FSDYHLFDQLLGPEGKASP-QLI---EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD 478 (546)
T ss_pred hhhHhhhHhhhCCccCCCh-HHH---HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence 8776544443 32222221 111 22333332222 11222222 999999999999999 8999999976665
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
..|.
T Consensus 479 QDPa 482 (546)
T COG4615 479 QDPA 482 (546)
T ss_pred CChH
Confidence 5443
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.64 E-value=5e-16 Score=128.53 Aligned_cols=141 Identities=23% Similarity=0.298 Sum_probs=97.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
+++.|+|++|||||||++.++...+ ..++.+..++.+... +......-+ .. .....+||.||+.+.++...+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~-~~~~~~i~~~~G~~~~d~~~~~~~~----~~-v~~l~~GCiCC~~~~~l~~~l~ 74 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQH-GRKIAVIENEFGEVGIDNQLVVDTD----EE-IIEMNNGCICCTVRGDLIRALL 74 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhccc-CCcEEEEecCCCccchhHHHHhCCC----ce-EEEeCCCEeEeeCchhHHHHHH
Confidence 4789999999999999999998743 357888888887643 433333211 10 1113679999998877755432
Q ss_pred -HHHHh-hcccccccccccChhHHHHHHHHHHh-----------cCceEEEEeCCCCCCcc---ccccccccccCEEEEe
Q 023913 161 -PLEEL-SNLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIP---RKGGPGITQADLLVIN 224 (275)
Q Consensus 161 -~L~~l-~~~~~~d~~~~eS~G~~q~~~laral-----------~~~~vlllD~t~g~d~~---~~~~~~i~~adiivlN 224 (275)
.++.+ .....++++++|+.|...+..+..++ ++..++++|+.++.+.. .....|++.||+||+|
T Consensus 75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivln 154 (158)
T cd03112 75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN 154 (158)
T ss_pred HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEe
Confidence 22333 23457899999988886555544332 16789999987765432 3346899999999999
Q ss_pred cCCC
Q 023913 225 KTDL 228 (275)
Q Consensus 225 K~Dl 228 (275)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9996
No 378
>PLN03140 ABC transporter G family member; Provisional
Probab=99.64 E-value=8e-17 Score=171.75 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=95.5
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
..++.+.+....+|++++|+|||||||||||++|+|.++| +|+|.+.+.++.... .++.++|++|+..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 3455566666788999999999999999999999999876 489999887764322 2467999999852
Q ss_pred ---HHHHhc-CCCc----------cchHHH---------H---------------HHHHHHHHHhhccccccc-----cc
Q 023913 139 ---RAVETG-GCPH----------AAIRED---------I---------------SINLGPLEELSNLFKADL-----LL 175 (275)
Q Consensus 139 ---~~~~~~-~~~~----------~~~~~~---------~---------------~~~~~~L~~l~~~~~~d~-----~~ 175 (275)
+++.+. .|.. ...++. . ..+...|+.+++....+. .+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 233222 1110 000110 0 012335566666544433 33
Q ss_pred cc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 176 CE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 176 ~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.. |+||+||+.+|++|+ +|+++++| |++|+|...
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t 371 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH
Confidence 34 999999999999999 89999999 999998643
No 379
>PTZ00243 ABC transporter; Provisional
Probab=99.63 E-value=7e-16 Score=165.97 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=83.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (275)
..++.+.++...+|++++|+|+|||||||||++|+|.++|+ |+|.+. +.++|++|++. +
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence 33455555666789999999999999999999999999998 988641 35899999862 2
Q ss_pred HHHhcCCCccchHHHHHH------HHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 140 AVETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~------~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
++.++. +. ..+.... ..+.++.+ +.....+....+ |+||+||++|||+++ +|+|+||| |++++|..
T Consensus 740 nI~~~~-~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 740 NILFFD-EE--DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHHcCC-hh--hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 332221 11 0011111 11122222 111111222333 999999999999999 99999999 89999853
No 380
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.61 E-value=3e-15 Score=136.16 Aligned_cols=191 Identities=19% Similarity=0.161 Sum_probs=113.1
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHH-H--hccccCchhHHHHH-hcCCCccc
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFL-M--RNGALPEERIRAVE-TGGCPHAA 150 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~-~--~ig~v~q~~~~~~~-~~~~~~~~ 150 (275)
...++++++|+|++|||||||++.++..+... .++.++..|+.... ...+. . ++.....++..++. +... +.
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 107 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTR--GH 107 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcc--cc
Confidence 34569999999999999999999999987766 68889888876421 11111 0 01111111100000 0000 00
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCCc
Q 023913 151 IREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAS 230 (275)
Q Consensus 151 ~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~ 230 (275)
.........+.++.+ ....+|.+++|+.|..+...-....++..+++.+|..+.+...........++++|+||+|+..
T Consensus 108 ~~~~~~~~~~~~~~l-~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 108 LGGLSQATRELILLL-DAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEG 186 (300)
T ss_pred ccchhHHHHHHHHHH-HhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccc
Confidence 000111222334333 3458999999988876655433333466677767777777654444456889999999999986
Q ss_pred cchhhH--HHHHHHHHhc-----CCCCCEEEEEecCCcCHHHHhccc
Q 023913 231 AIGADL--AVMERDALRM-----RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 231 ~~~~~~--~~~~~~i~~~-----~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
...... ..+...+..+ ....+++++|+++++|++++++.+
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i 233 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAI 233 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHH
Confidence 521111 1111112221 112469999999999999998765
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.61 E-value=8.3e-16 Score=148.87 Aligned_cols=136 Identities=17% Similarity=0.106 Sum_probs=91.5
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++ .+....+.++...+|+.++|+||||+|||||||+|+|.+.|. |.|.+-.+ -++||.
T Consensus 325 ~~~~~~y~~---~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf 390 (530)
T COG0488 325 ENVSKGYDG---GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYF 390 (530)
T ss_pred eccccccCC---CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEE
Confidence 455555555 333444455556779999999999999999999999999888 87765332 247787
Q ss_pred CchhHHHHHhcCCCccchHHH---------HHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 134 PEERIRAVETGGCPHAAIRED---------ISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 134 ~q~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
.|+..... +..+..+. ...+...|..|.... .....+.. ||||+.|+.+|+.++ .|.|+|||
T Consensus 391 ~Q~~~~l~-----~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 391 DQHRDELD-----PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred EehhhhcC-----ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 77652111 11011000 123344666665543 23344444 999999999999998 89999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
||+-+|...
T Consensus 466 PTNhLDi~s 474 (530)
T COG0488 466 PTNHLDIES 474 (530)
T ss_pred CCccCCHHH
Confidence 899898754
No 382
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.59 E-value=1.6e-15 Score=129.97 Aligned_cols=116 Identities=15% Similarity=0.055 Sum_probs=76.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC----------CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----------g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
..+| +++|+||||||||||+++|++++.+. +.+.+.+.+... ....+.+++++|++..+ +..
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~--~~~-- 91 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR--YSI-- 91 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--eeE--
Confidence 3457 99999999999999999999987554 234444433321 12246799999986433 110
Q ss_pred ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~ 209 (275)
. .. ..+.+.++. ....+..+.+ |+||+||+++|++++ +|.++++| |++++|...
T Consensus 92 -~-~~---~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~ 152 (197)
T cd03278 92 -I-SQ---GDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN 152 (197)
T ss_pred -E-eh---hhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH
Confidence 0 01 122223333 2233445555 999999999999974 46899999 888888654
No 383
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=2.1e-14 Score=126.27 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.1
Q ss_pred ccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913 173 LLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 173 ~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~ 209 (275)
..+.+ |+||+||++||++++ +|+++|+| |++++|...
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~ 197 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQY 197 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHH
Confidence 33444 999999999999994 47999999 888888654
No 384
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.54 E-value=3.5e-14 Score=124.07 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=39.4
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~ 209 (275)
.+.|+.+.... ..+..+.+ |+||+||++||++|+ +| +++|+| |++++|...
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~ 174 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD 174 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHH
Confidence 34566665544 35666667 999999999999999 66 699999 888988653
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=5.5e-15 Score=122.42 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=101.1
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchH----H
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR----E 153 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~----~ 153 (275)
...|+++-++|||||||||||..++|+++..|+|.+.|.+.......++.+.-+|+.|+......+..+.+.++. +
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~ 101 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKT 101 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHH
Confidence 345999999999999999999999999888899999999998887788888889988864211111112222211 1
Q ss_pred HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc--------CceEEEEe-CCCCCCccccc------cccccc
Q 023913 154 DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPRKG------GPGITQ 217 (275)
Q Consensus 154 ~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~--------~~~vlllD-~t~g~d~~~~~------~~~i~~ 217 (275)
....+.+....+...++..+-+.. |||+.||+-+|..++ ...++++| |.+++|+..+. ..+-..
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~ 181 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence 111111122233344455555555 999999999986654 25799999 78888864321 111123
Q ss_pred cCEEEEecCCCCc
Q 023913 218 ADLLVINKTDLAS 230 (275)
Q Consensus 218 adiivlNK~Dl~~ 230 (275)
.-.||+..-||-.
T Consensus 182 G~~vims~HDLNh 194 (248)
T COG4138 182 GLAIVMSSHDLNH 194 (248)
T ss_pred CcEEEEeccchhh
Confidence 3456777778753
No 386
>PRK15494 era GTPase Era; Provisional
Probab=99.49 E-value=2.2e-13 Score=125.96 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=104.5
Q ss_pred cccCCCCCCC---ccccccCCCCCCCCCCccccccccCCCc-------EEEEEcCCcchHHHHHHHHHhccCCCCcEEEE
Q 023913 45 YHSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNFNERAF-------TVGIGGPVGTGKTALMLALCKFLRDKYSLAAV 114 (275)
Q Consensus 45 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~ge-------iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~ 114 (275)
+.+++.+.|. .++.|.||. ...++....+....|+ .++|+|.+|+|||||++.|+|. ++.+.
T Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~-----k~~iv 80 (339)
T PRK15494 9 FAYREEFKGDTEALAAAVREDA---STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE-----KLSIV 80 (339)
T ss_pred cccchhhCCccccccccccCCC---CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC-----ceeec
Confidence 3445566665 677777775 3333333333345577 9999999999999999999985 34333
Q ss_pred eccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHH--------HHHH
Q 023913 115 TNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDN--------LAAN 186 (275)
Q Consensus 115 ~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~--------q~~~ 186 (275)
...+.+... ...+.+ ........+.+++|+. ....
T Consensus 81 s~k~~tTr~----~~~~~~---------------------------------~~~~~qi~~~DTpG~~~~~~~l~~~~~r 123 (339)
T PRK15494 81 TPKVQTTRS----IITGII---------------------------------TLKDTQVILYDTPGIFEPKGSLEKAMVR 123 (339)
T ss_pred cCCCCCccC----cEEEEE---------------------------------EeCCeEEEEEECCCcCCCcccHHHHHHH
Confidence 333322111 000110 0011122344444541 1111
Q ss_pred HH-HHh--cCceEEEEeCCCCCCccc-cc---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913 187 FS-REL--ADYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 259 (275)
Q Consensus 187 la-ral--~~~~vlllD~t~g~d~~~-~~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~ 259 (275)
.+ .++ ++..++++|+..+.+... .. ......+.++|+||+|+... ....+.+.+...++..+++++||++
T Consensus 124 ~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 11 112 267888889765433221 11 11224566889999998654 3455666677777778899999999
Q ss_pred CcCHHHHhcccc
Q 023913 260 VIGIIFTLSITH 271 (275)
Q Consensus 260 ~~g~~~l~~~~~ 271 (275)
|.|++++++.+.
T Consensus 201 g~gv~eL~~~L~ 212 (339)
T PRK15494 201 GKNIDGLLEYIT 212 (339)
T ss_pred ccCHHHHHHHHH
Confidence 999999998653
No 387
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=1.1e-13 Score=144.71 Aligned_cols=122 Identities=23% Similarity=0.264 Sum_probs=85.1
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HHH
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~~ 141 (275)
.+.+.++..++|+.++|+|+.|||||+||.+|+|.++.. |++.+.+. ++|+||.+. +|+
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNI 602 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENI 602 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhh
Confidence 455555566779999999999999999999999999987 99888763 789999873 344
Q ss_pred HhcCCCccchHHHHHHHHH--HH-HHhhcc-ccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 142 ETGGCPHAAIREDISINLG--PL-EELSNL-FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~--~L-~~l~~~-~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
.+|. +.-. +....+.+ +| .++... .+-...++| |||||||+++|||+. +.+|++|| |.+..|.
T Consensus 603 LFG~-~~d~--~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa 676 (1381)
T KOG0054|consen 603 LFGS-PYDE--ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA 676 (1381)
T ss_pred hcCc-cccH--HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence 3433 2211 11111111 11 122122 233345566 999999999999998 89999999 8777764
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=130.93 Aligned_cols=146 Identities=13% Similarity=0.104 Sum_probs=92.9
Q ss_pred ccccccCCCCCCCCCCcccccccc-CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec-cCCCCChHHHHHhcc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN-DIFTKEDGEFLMRNG 131 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~-d~~~~~~~~~~~~ig 131 (275)
.++.|-|++ +- .+.+...|- ..+..++++||||+|||||||+++|.+.|+ |.+..-.. .+..... .......
T Consensus 393 ~nv~F~y~~---~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q-h~~e~ld 467 (614)
T KOG0927|consen 393 QNVSFGYSD---NP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ-HLAEQLD 467 (614)
T ss_pred eccccCCCC---cc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh-hhHhhcC
Confidence 777787776 22 455555554 559999999999999999999999999998 87754332 2211000 0000000
Q ss_pred ccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc--ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 132 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 132 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e--S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+- ..+.++. ++..............|.++++....+....+ |.||+.|+.+|+.+. .|.++||| ||+++|+
T Consensus 468 l~-~s~le~~----~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 468 LD-KSSLEFM----MPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred cc-hhHHHHH----HHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 00 0001111 11111011223344578888887665555555 999999999999988 89999999 9999998
Q ss_pred ccc
Q 023913 208 PRK 210 (275)
Q Consensus 208 ~~~ 210 (275)
...
T Consensus 543 ~ti 545 (614)
T KOG0927|consen 543 ETI 545 (614)
T ss_pred hhH
Confidence 653
No 389
>COG1159 Era GTPase [General function prediction only]
Probab=99.46 E-value=3.4e-13 Score=120.06 Aligned_cols=147 Identities=19% Similarity=0.159 Sum_probs=98.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
.-+++|+|++.+|||||+|.|+|. ++++....+++++. +-.|.+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~-----KisIvS~k~QTTR~----~I~GI~--------------------------- 49 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRN----RIRGIV--------------------------- 49 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcC-----ceEeecCCcchhhh----heeEEE---------------------------
Confidence 458999999999999999999998 89998877765421 111221
Q ss_pred HHHHhhcccccccccccChhH--------HHHHHHHH-Hhc--CceEEEEeCCCCCCcccc-ccccc---cccCEEEEec
Q 023913 161 PLEELSNLFKADLLLCESGGD--------NLAANFSR-ELA--DYIIYIIDVSGGDKIPRK-GGPGI---TQADLLVINK 225 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~eS~G~--------~q~~~lar-al~--~~~vlllD~t~g~d~~~~-~~~~i---~~adiivlNK 225 (275)
.....+.++++++|. +.....|+ ++. |..++++|+..+...-.. ...++ ..+.++++||
T Consensus 50 ------t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNK 123 (298)
T COG1159 50 ------TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNK 123 (298)
T ss_pred ------EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEc
Confidence 122334444444443 11222222 233 677788887664332221 11223 3578999999
Q ss_pred CCCCccchhh-HHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 226 TDLASAIGAD-LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 226 ~Dl~~~~~~~-~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+|.... .. +..+.+.+....+...|+++||+.|.+++.|++.+.
T Consensus 124 ID~~~~--~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 124 IDKVKP--KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred cccCCc--HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence 999987 33 466777888888999999999999999999998653
No 390
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=8.6e-14 Score=123.36 Aligned_cols=129 Identities=21% Similarity=0.195 Sum_probs=77.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEec-cCCCC--ChHHHHHhccccCchhHH----------------
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTK--EDGEFLMRNGALPEERIR---------------- 139 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~-d~~~~--~~~~~~~~ig~v~q~~~~---------------- 139 (275)
..+++|+||||||||||+++|++++.++ +++.+.+. ++... ........+++++|++..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999998865 45555443 22111 001122367778876310
Q ss_pred -HHHhcCCCc--cc-hHHHHHHHHHHHHHhhcc--------------------ccccccccc-ChhHHHHHHHHHHhc--
Q 023913 140 -AVETGGCPH--AA-IREDISINLGPLEELSNL--------------------FKADLLLCE-SGGDNLAANFSRELA-- 192 (275)
Q Consensus 140 -~~~~~~~~~--~~-~~~~~~~~~~~L~~l~~~--------------------~~~d~~~~e-S~G~~q~~~laral~-- 192 (275)
.+..+.... .. .......+.+.|+.+... ...+..+.+ |+||+||+++|++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 011111000 00 011123444566666443 112344455 999999999999885
Q ss_pred ---CceEEEEe-CCCCCCccc
Q 023913 193 ---DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 ---~~~vlllD-~t~g~d~~~ 209 (275)
+|.++|+| |++++|...
T Consensus 185 ~~~~~~illlDEPt~~ld~~~ 205 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSH 205 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHH
Confidence 57999999 888887643
No 391
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=2.5e-13 Score=127.03 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=102.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 159 (275)
..-.++|+|++.+|||||+|.|+|.. -.+.....++..|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee-----R~Iv~~~aGTTRD------------------------------------ 215 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE-----RVIVSDIAGTTRD------------------------------------ 215 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc-----eEEecCCCCcccc------------------------------------
Confidence 35689999999999999999999983 3556555555443
Q ss_pred HHHHHhhcccccccccccChhHHHHHHH---------HHHh-----cCceEEEEeCCCCCCcccccc----ccccccCEE
Q 023913 160 GPLEELSNLFKADLLLCESGGDNLAANF---------SREL-----ADYIIYIIDVSGGDKIPRKGG----PGITQADLL 221 (275)
Q Consensus 160 ~~L~~l~~~~~~d~~~~eS~G~~q~~~l---------aral-----~~~~vlllD~t~g~d~~~~~~----~~i~~adii 221 (275)
.+..........+.++++.|+|+|..+ +|++ ++-.++++|++.+...+.... .-...+.+|
T Consensus 216 -~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 216 -SIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred -ceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence 111111223344566667777655322 3333 378899999998876554321 223578999
Q ss_pred EEecCCCCccchhhHHHHHHHHHhcCC---CCCEEEEEecCCcCHHHHhccc
Q 023913 222 VINKTDLASAIGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
|+||||+.+......+.++..++...+ .+|++++||+++.+++.+++..
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i 346 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAI 346 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHH
Confidence 999999988644556666666665544 7999999999999999998754
No 392
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=1.3e-13 Score=141.86 Aligned_cols=141 Identities=17% Similarity=0.085 Sum_probs=103.9
Q ss_pred CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---CCcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913 66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---- 138 (275)
+.++.+.+++-...+|-.++|+|.+||||||||+.|+|-... +|.|.+.|.... ...+.|.+||+.|+++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCcc
Confidence 355666677779999999999999999999999999997543 288888876543 2567889999999873
Q ss_pred ----HHHHhc---CCC-ccchHHHHHHHHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-Cc-eEEEEe-CC
Q 023913 139 ----RAVETG---GCP-HAAIREDISINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DY-IIYIID-VS 202 (275)
Q Consensus 139 ----~~~~~~---~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~-~vlllD-~t 202 (275)
+-+.+. +.+ .....+..+.+.+.++.+.+....|.+++. |..||+|+.|+-.|+ +| .|++|| ||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 111111 111 122233334455566666666667777766 889999999999998 88 899999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+|+|.++
T Consensus 959 SGLDsqa 965 (1391)
T KOG0065|consen 959 SGLDSQA 965 (1391)
T ss_pred CCccHHH
Confidence 9999765
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.43 E-value=5.3e-13 Score=129.66 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=92.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+..|+ .+.-+.+.+.-..+|+-+.|.|++|||||||+|+|+|+.+-. |+|.+=.. .++-|+
T Consensus 396 ~nl~l~~p~---~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lfl 461 (604)
T COG4178 396 ENLSLRTPD---GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFL 461 (604)
T ss_pred eeeeEECCC---CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEe
Confidence 566666776 453344444455779999999999999999999999999865 77654311 123455
Q ss_pred Cchh------HHHHH-hcCCC-ccchHHHHHHHH------HHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEE
Q 023913 134 PEER------IRAVE-TGGCP-HAAIREDISINL------GPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 134 ~q~~------~~~~~-~~~~~-~~~~~~~~~~~~------~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vll 198 (275)
||.| .+... ..... .... +.+..++ +..+++......+.++ |+|++||+++||.++ .|++++
T Consensus 462 pQ~PY~p~GtLre~l~YP~~~~~~~d-~~l~~vL~~vgL~~L~~rl~~~~~W~~vL--S~GEqQRlafARilL~kP~~v~ 538 (604)
T COG4178 462 PQRPYLPQGTLREALCYPNAAPDFSD-AELVAVLHKVGLGDLAERLDEEDRWDRVL--SGGEQQRLAFARLLLHKPKWVF 538 (604)
T ss_pred cCCCCCCCccHHHHHhCCCCCCCCCh-HHHHHHHHHcCcHHHHHHHhccCcHhhhc--ChhHHHHHHHHHHHHcCCCEEE
Confidence 5544 22211 11111 1111 1111111 1223333333344433 999999999999999 899999
Q ss_pred Ee-CCCCCCccccc--cccc--cccCEEEEe
Q 023913 199 ID-VSGGDKIPRKG--GPGI--TQADLLVIN 224 (275)
Q Consensus 199 lD-~t~g~d~~~~~--~~~i--~~adiivlN 224 (275)
|| +|+.+|..... -.++ +.+++.||+
T Consensus 539 LDEATsALDe~~e~~l~q~l~~~lp~~tvIS 569 (604)
T COG4178 539 LDEATSALDEETEDRLYQLLKEELPDATVIS 569 (604)
T ss_pred EecchhccChHHHHHHHHHHHhhCCCCEEEE
Confidence 99 67777765432 1223 337777765
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.4e-13 Score=129.88 Aligned_cols=138 Identities=15% Similarity=0.070 Sum_probs=75.8
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc--CCCCChHHHHHhccccCchhHHHH
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND--IFTKEDGEFLMRNGALPEERIRAV 141 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d--~~~~~~~~~~~~ig~v~q~~~~~~ 141 (275)
.|+++..+.+.+.....|..+||+|+||+||||||++|+.- .|.....+ .... +...... .+-.+..+.-
T Consensus 89 a~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-----~v~~f~veqE~~g~-~t~~~~~--~l~~D~~~~d 160 (582)
T KOG0062|consen 89 AYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-----QVSGFHVEQEVRGD-DTEALQS--VLESDTERLD 160 (582)
T ss_pred eecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-----CcCccCchhheecc-chHHHhh--hhhccHHHHH
Confidence 45555555555556678999999999999999999999982 22222211 1110 0000000 0000000000
Q ss_pred HhcCCCccchHHHHHHHHH-HHHHhhccccc-cccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHAAIREDISINLG-PLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~-~L~~l~~~~~~-d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+.........-.+..+.. .|..++..... ...+.+ |||.+.|++|||||. +|+|+||| ||+-+|+.+
T Consensus 161 fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 161 FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence 0000000000001112222 55555444332 233444 999999999999998 99999999 888888765
No 395
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.43 E-value=4.2e-14 Score=122.39 Aligned_cols=127 Identities=18% Similarity=0.006 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc-CCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI 157 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l-~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~ 157 (275)
+|++++|+|+||||||||+++|++.+ .+. +..... ..............+++++|......................
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~ 105 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRI 105 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHh
Confidence 48999999999999999999999643 332 332221 000111112223457777776421110000111111111110
Q ss_pred HHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-----------CceEEEEe-CCCCCCccc
Q 023913 158 NLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----------DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 158 ~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-----------~~~vlllD-~t~g~d~~~ 209 (275)
. .+.........+..+.+ |+||+||+++|++++ +|+++|+| |++++|...
T Consensus 106 ~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~ 168 (213)
T cd03279 106 V--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA 168 (213)
T ss_pred h--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHH
Confidence 0 11111112223444444 999999999999996 45799999 888888643
No 396
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2e-12 Score=123.31 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=102.5
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH---------
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~--------- 138 (275)
.+.++++...+||++||.|-.|||+|-|++.|.|..++. |+|.+.+.++...++. .+...++|+|+++-
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 355666667889999999999999999999999987777 9999999988766655 44557999999862
Q ss_pred --HHHHhc---CCC---ccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 139 --RAVETG---GCP---HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 139 --~~~~~~---~~~---~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
+|+.+. ... ....+.....+.+.+..+..+. ..+..+.. |||.+||+.|||.|. +|+|+||| ||.|.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 222111 100 1111222233344555554433 44555556 999999999999999 99999999 999999
Q ss_pred ccccc
Q 023913 207 IPRKG 211 (275)
Q Consensus 207 ~~~~~ 211 (275)
+-+|.
T Consensus 434 VGAK~ 438 (500)
T COG1129 434 VGAKA 438 (500)
T ss_pred cchHH
Confidence 86653
No 397
>PRK00089 era GTPase Era; Reviewed
Probab=99.40 E-value=1.2e-12 Score=118.33 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=87.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
..+++|+|++|||||||+|.|+|. ++.+....+.+... ...++..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~-----~~~~vs~~~~tt~~----~i~~i~~-------------------------- 49 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRH----RIRGIVT-------------------------- 49 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCC-----ceeecCCCCCcccc----cEEEEEE--------------------------
Confidence 457999999999999999999986 44444443332211 0001100
Q ss_pred HHHHhhcccccccccccChhHHH--------HHHHH-HHh--cCceEEEEeCCCCCCcccc-cc---ccccccCEEEEec
Q 023913 161 PLEELSNLFKADLLLCESGGDNL--------AANFS-REL--ADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINK 225 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~eS~G~~q--------~~~la-ral--~~~~vlllD~t~g~d~~~~-~~---~~i~~adiivlNK 225 (275)
....+..+.+++|... ....+ .++ ++..++++|++........ .. .....+.++|+||
T Consensus 50 -------~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNK 122 (292)
T PRK00089 50 -------EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNK 122 (292)
T ss_pred -------cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEEC
Confidence 0112333444444211 11111 122 2678889998763322111 11 1224578999999
Q ss_pred CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+|+.... ..+....+.+.+..+..+++++|++++.|++++++.+.
T Consensus 123 iDl~~~~-~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~ 167 (292)
T PRK00089 123 IDLVKDK-EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIA 167 (292)
T ss_pred CcCCCCH-HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence 9998431 34444555666666778999999999999999987653
No 398
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.39 E-value=1.5e-12 Score=116.77 Aligned_cols=77 Identities=13% Similarity=0.013 Sum_probs=50.2
Q ss_pred CceEEEEeCCCCCCccccccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 193 DYIIYIIDVSGGDKIPRKGGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
+..++++|++........... ....+-++|+||+|+... .......+.+....+..+++++||++|.|++++++.
T Consensus 81 Dvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~ 158 (270)
T TIGR00436 81 DLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK--DKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAF 158 (270)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH--HHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHH
Confidence 678889998765432211111 124566899999999754 333223333444445568999999999999999876
Q ss_pred cc
Q 023913 270 TH 271 (275)
Q Consensus 270 ~~ 271 (275)
+.
T Consensus 159 l~ 160 (270)
T TIGR00436 159 IE 160 (270)
T ss_pred HH
Confidence 53
No 399
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.39 E-value=1.8e-12 Score=105.15 Aligned_cols=78 Identities=15% Similarity=-0.005 Sum_probs=55.3
Q ss_pred CceEEEEeCCCCCCccc-ccccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPR-KGGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-~~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..++++|++....... ....+ .+.+.++|+||+|+.... ..+..+.+.+....+..+++.+|++++.|++++++
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-EDLLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH-HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 67888999876522111 11111 236789999999998432 45566666777777778999999999999999988
Q ss_pred ccc
Q 023913 269 ITH 271 (275)
Q Consensus 269 ~~~ 271 (275)
.+.
T Consensus 163 ~l~ 165 (168)
T cd04163 163 EIV 165 (168)
T ss_pred HHH
Confidence 654
No 400
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.39 E-value=8e-12 Score=101.16 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=60.1
Q ss_pred CceEEEEeCCCCCC-ccccccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 193 DYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 193 ~~~vlllD~t~g~d-~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+-.+++.|++.... .|..+...|..+-+-|+||+|+... .++++..+++++...- .+||++|+.+++|+++|.+.++
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~-~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGV-KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCC-CCeEEEECCCCcCHHHHHHHHh
Confidence 66778889887654 3555566678888899999999832 2678888888877654 4689999999999999988764
No 401
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-12 Score=121.41 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=86.2
Q ss_pred ccccccCCCCCCCCCCccccccccCC-CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
-+|+|-||+ .++++....|-.. -..++|+||||.||||||++|+|-+.|+ |...-.- +-+||+
T Consensus 590 H~VtFgy~g----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~ 654 (807)
T KOG0066|consen 590 HDVTFGYPG----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW 654 (807)
T ss_pred ccccccCCC----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence 567888888 4455555555444 7789999999999999999999999987 7543110 123555
Q ss_pred cCchhHHHHHhcCCCc------cchHHHHHHHHHHHHHhhcccccccc-ccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 133 LPEERIRAVETGGCPH------AAIREDISINLGPLEELSNLFKADLL-LCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 133 v~q~~~~~~~~~~~~~------~~~~~~~~~~~~~L~~l~~~~~~d~~-~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
.-|...+.+ ++... ..+.-....+...|-.|++..-...+ +.+ ||||+-|+++|-..+ .|+|+||| ||
T Consensus 655 FdQh~~E~L--~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 655 FDQHANEAL--NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hhhhhHHhh--ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 444322111 11100 00000112334466666665433333 333 999999999986544 89999999 88
Q ss_pred CCCCcc
Q 023913 203 GGDKIP 208 (275)
Q Consensus 203 ~g~d~~ 208 (275)
+.+|+-
T Consensus 733 NNLDIE 738 (807)
T KOG0066|consen 733 NNLDIE 738 (807)
T ss_pred CCcchh
Confidence 888864
No 402
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.38 E-value=5.8e-14 Score=121.62 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=30.9
Q ss_pred ccccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913 171 ADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 171 ~d~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~ 209 (275)
.+..+.. |+||+||+++|++++ +|.++++| |++++|...
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~ 166 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRN 166 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHH
Confidence 3444444 999999999999885 37999999 888988654
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.38 E-value=8.3e-13 Score=123.21 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=81.3
Q ss_pred ccccCCC---CCCCCCCccccc-cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcc
Q 023913 57 EPIYSPG---YFSRRAPPILSR-NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG 131 (275)
Q Consensus 57 ~~~~~~~---~~~~~~~~~~~~-~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig 131 (275)
.-+.|++ .|++.+ +.+. -....||+++++||||-|||||+++|+|.++|+ |+ ..+ -+++
T Consensus 341 ~lv~y~~~~k~~g~F~--L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vS 404 (591)
T COG1245 341 TLVEYPDLKKTYGDFK--LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVS 404 (591)
T ss_pred eeeecchheeecCceE--EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEe
Confidence 3355665 444432 2222 234569999999999999999999999999998 75 111 1233
Q ss_pred ccCchh-------HHHHHhc--C--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 132 ALPEER-------IRAVETG--G--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 132 ~v~q~~-------~~~~~~~--~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
|-||.. .+..... . .....++ .+.+..|.+...+++.+.+ |||+.||+++|.+|. +++++|
T Consensus 405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred ecceeecCCCCCcHHHHHHHhhhhhcccchhH------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEE
Confidence 333321 1111110 0 0011111 1123334444456666777 999999999999999 899999
Q ss_pred Ee-CCCCCCcc
Q 023913 199 ID-VSGGDKIP 208 (275)
Q Consensus 199 lD-~t~g~d~~ 208 (275)
|| |++.+|.-
T Consensus 479 lDEPSA~LDvE 489 (591)
T COG1245 479 LDEPSAYLDVE 489 (591)
T ss_pred ecCchhhccHH
Confidence 99 77788864
No 404
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.34 E-value=4.1e-12 Score=113.31 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=38.5
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~ 209 (275)
.+.|+.+++.+ ..+..+.+ |+||+||+.+|++|+ + |.++|+| |++++|...
T Consensus 150 ~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~ 207 (261)
T cd03271 150 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD 207 (261)
T ss_pred HHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH
Confidence 34555555544 34555556 999999999999998 4 6899999 899998654
No 405
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.31 E-value=4.5e-12 Score=120.35 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC---CcEEEEeccCCCCChHHHHHhcc-ccCchhHH---
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR--- 139 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~---g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~--- 139 (275)
+.....++.+-..+|+.++|+|+|||||||+|++|.+...|. -.++....++.. ++....+.+- ...+...+
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p-s~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP-SEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC-chHHHHHHHhhhhHHHHHHHHH
Confidence 355566666667889999999999999999999999987764 334444444322 1222222111 11111110
Q ss_pred HHH-h-cCCCc---cch---HHH--------H-HHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 140 AVE-T-GGCPH---AAI---RED--------I-SINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 140 ~~~-~-~~~~~---~~~---~~~--------~-~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
+.+ + ..|.. ..+ .+. + ..+...|..++.. .-.++.+.+ |+|++.|++|||+|. .|.+++|
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL 245 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL 245 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence 111 1 11111 110 000 0 1122233333222 233455555 999999999999999 8999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| ||+++|.-+
T Consensus 246 DEPtnhLDleA 256 (614)
T KOG0927|consen 246 DEPTNHLDLEA 256 (614)
T ss_pred cCCccCCCHHH
Confidence 9 999998654
No 406
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.31 E-value=1.6e-11 Score=102.45 Aligned_cols=161 Identities=17% Similarity=0.056 Sum_probs=91.0
Q ss_pred EEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHH
Q 023913 84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLE 163 (275)
Q Consensus 84 v~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 163 (275)
++|+|..|||||||++.|++...+.+...............+..+.+... . ...
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-------------~~~ 55 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIK-------------S-------------GVA 55 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCee-------------c-------------ceE
Confidence 78999999999999999999755442211111111111111111111000 0 000
Q ss_pred HhhcccccccccccChhHHHHHHHHH-Hh--cCceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccc--hh
Q 023913 164 ELSNLFKADLLLCESGGDNLAANFSR-EL--ADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GA 234 (275)
Q Consensus 164 ~l~~~~~~d~~~~eS~G~~q~~~lar-al--~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~--~~ 234 (275)
.+ ........+.+++|........+ .+ ++..++++|+..+...... .......+.++|+||+|+.... ..
T Consensus 56 ~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~ 134 (189)
T cd00881 56 TF-EWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEE 134 (189)
T ss_pred EE-eeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHH
Confidence 00 11134566777778654322222 22 3788999998765432211 1112356779999999998631 12
Q ss_pred hHHHHHHHHHhcC------------CCCCEEEEEecCCcCHHHHhcccc
Q 023913 235 DLAVMERDALRMR------------DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 235 ~~~~~~~~i~~~~------------~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
..+.+.+.++... ...+++++|++.+.|++++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~ 183 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIV 183 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHH
Confidence 2344444554432 358899999999999999988654
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.30 E-value=1.5e-11 Score=112.69 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=104.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh------HHHHHhccccCchhHHHHHhcCCCccch
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED------GEFLMRNGALPEERIRAVETGGCPHAAI 151 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~------~~~~~~ig~v~q~~~~~~~~~~~~~~~~ 151 (275)
.++++++|+|||||||||++..|++.+.+. ++|.+.+.|...... ...+..+.++++.. +..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~------~~dp---- 181 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE------GADP---- 181 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC------CCCH----
Confidence 358999999999999999999999999887 789999988753211 11122344444321 0000
Q ss_pred HHHHHHHHHHHHHhhcccccccccccChhHHH--------HHHHHHH---hc----CceEEEEeCCCCCCcccccccccc
Q 023913 152 REDISINLGPLEELSNLFKADLLLCESGGDNL--------AANFSRE---LA----DYIIYIIDVSGGDKIPRKGGPGIT 216 (275)
Q Consensus 152 ~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q--------~~~lara---l~----~~~vlllD~t~g~d~~~~~~~~i~ 216 (275)
...+.+.+... ....+|.+++++.|..+ ...+.+. +. +..++++|++.+.+.........+
T Consensus 182 ---a~~v~~~l~~~-~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~ 257 (318)
T PRK10416 182 ---ASVAFDAIQAA-KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHE 257 (318)
T ss_pred ---HHHHHHHHHHH-HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence 01112233222 34568999999777532 1122221 11 346899999988755443322122
Q ss_pred --ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 217 --QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 217 --~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
..+-+|+||.|.....+..+..+ ... +.||.+++ +|+++++|....
T Consensus 258 ~~~~~giIlTKlD~t~~~G~~l~~~----~~~--~~Pi~~v~--~Gq~~~Dl~~~~ 305 (318)
T PRK10416 258 AVGLTGIILTKLDGTAKGGVVFAIA----DEL--GIPIKFIG--VGEGIDDLQPFD 305 (318)
T ss_pred hCCCCEEEEECCCCCCCccHHHHHH----HHH--CCCEEEEe--CCCChhhCccCC
Confidence 35679999999776644444433 333 78999998 699998876543
No 408
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.30 E-value=4.4e-11 Score=98.73 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=53.2
Q ss_pred CceEEEEeCCCCCCcccc-ccc-cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 193 DYIIYIIDVSGGDKIPRK-GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~-~~~-~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..++++|++........ ... ....+-++++||+|+... +.+.+.+.+.+.....|++++|+++++|++++++.+
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence 778888998766432111 111 123456889999998653 455666777776655799999999999999999865
Q ss_pred c
Q 023913 271 H 271 (275)
Q Consensus 271 ~ 271 (275)
.
T Consensus 143 ~ 143 (158)
T PRK15467 143 A 143 (158)
T ss_pred H
Confidence 4
No 409
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.28 E-value=7.3e-13 Score=114.07 Aligned_cols=116 Identities=20% Similarity=0.090 Sum_probs=65.2
Q ss_pred EEEEEcCCcchHHHHHHHHH----hccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-HHHHHhcCCCccchHHHHH
Q 023913 83 TVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGCPHAAIREDIS 156 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~----g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~~~~~~~~~~~~ 156 (275)
+++|+|+||||||||+++|. |...++ +++......+. .......+++++|++ ... +..+...+..+.+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~--~~v~r~~~~~~~~~ 98 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKK--YTITRSLAILENVI 98 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCE--EEEEEEhhHhhcee
Confidence 99999999999999999995 776665 54431111111 112234577777764 100 00000001111100
Q ss_pred H-HHHHHHHhhccccccccccc-ChhHHHH------HHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 157 I-NLGPLEELSNLFKADLLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 157 ~-~~~~L~~l~~~~~~d~~~~e-S~G~~q~------~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
. ....+..+. +..+.. |+||+|+ ++++++++ +|+++++| |++++|..
T Consensus 99 ~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 99 FCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred eechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 0 000111111 333334 9999996 67788888 89999999 88888754
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.27 E-value=5.3e-12 Score=103.37 Aligned_cols=141 Identities=22% Similarity=0.239 Sum_probs=87.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHH-hccc--cCchhHHHHH-h-cCCCccchHHHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLM-RNGA--LPEERIRAVE-T-GGCPHAAIREDI 155 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~-~ig~--v~q~~~~~~~-~-~~~~~~~~~~~~ 155 (275)
+++++|++|||||||++.++..+.+. +++.++..|+..... ..+.. ++.. ..+....... . ++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLS--- 77 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccc---
Confidence 37899999999999999999988777 789898888754211 11110 0000 0000000000 0 000000001
Q ss_pred HHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCC
Q 023913 156 SINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 227 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~D 227 (275)
....+.++.+ ....+|++++++.|..+....+.+.++-.|++.-|..++..+..+..++..||++++||+|
T Consensus 78 ~~~~~~~~~~-~~~~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 78 RATPEVIRVL-DAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred hhHHHHHHHH-HhcCCCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 1112233333 2347899999988876655444444588888999998888888888999999999999997
No 411
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.26 E-value=4.4e-11 Score=97.93 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=54.2
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCC---CCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|+......... .......+.++++||+|+........+.+.+.+++..+ ..+++++|++++.|+++
T Consensus 86 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 86 DVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDK 165 (174)
T ss_pred CeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHH
Confidence 778889997655332211 11112456789999999986632344555555554443 57899999999999999
Q ss_pred Hhccccee
Q 023913 266 TLSITHYI 273 (275)
Q Consensus 266 l~~~~~~~ 273 (275)
+++.+..+
T Consensus 166 ~~~~l~~~ 173 (174)
T cd01895 166 LFDAIDEV 173 (174)
T ss_pred HHHHHHHh
Confidence 98866543
No 412
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.25 E-value=3.1e-11 Score=99.36 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=49.2
Q ss_pred CceEEEEeCCCCC-Ccc--cc-------cc-ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGGD-KIP--RK-------GG-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g~-d~~--~~-------~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~ 261 (275)
+..++++|++... ... .. .. .....+-++|+||+|+.+.. ...+.+...+.+. ...+++++|++++.
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~~Sa~~~~ 157 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE-ELFELLKELLKEL-WGKPVFPISALTGE 157 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch-hhHHHHHHHHhhC-CCCCEEEEecCCCC
Confidence 6788899987652 111 00 00 01245668999999997652 2223333333332 34679999999999
Q ss_pred CHHHHhcccce
Q 023913 262 GIIFTLSITHY 272 (275)
Q Consensus 262 g~~~l~~~~~~ 272 (275)
|++++++.+..
T Consensus 158 gi~~l~~~i~~ 168 (170)
T cd01898 158 GLDELLRKLAE 168 (170)
T ss_pred CHHHHHHHHHh
Confidence 99999987653
No 413
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.23 E-value=2.3e-11 Score=99.95 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=59.6
Q ss_pred cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCccchhhHHH
Q 023913 171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLASAIGADLAV 238 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~~~~~~~~~ 238 (275)
....+.+++|+.....+.+... +..++++|++....... ... ..-..+-++++||+|+... ...++
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~ 127 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEE 127 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHH
Confidence 3444556677654444433333 67788999765421110 000 0123566889999998765 33444
Q ss_pred HHHHHHhc----C-CCCCEEEEEecCCcCHHHHhccc
Q 023913 239 MERDALRM----R-DGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 239 ~~~~i~~~----~-~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+.+.+... . ...+++++|+++|+|++++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 128 IKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred HHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 54444432 1 24589999999999999998875
No 414
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.22 E-value=3.1e-11 Score=113.37 Aligned_cols=144 Identities=21% Similarity=0.189 Sum_probs=90.8
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI 157 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~ 157 (275)
..+|-.++|+|++.+|||||||.|++. ..+++..-+++++| +.+ +.+.++|
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~-----d~AIVTdI~GTTRD--vie----------e~i~i~G------------ 264 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGR-----DRAIVTDIAGTTRD--VIE----------EDINLNG------------ 264 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcC-----CceEecCCCCCccc--eEE----------EEEEECC------------
Confidence 356899999999999999999999998 56777776776654 111 0011222
Q ss_pred HHHHHHHhhcccccccccccChhH------HHHHHHHHHh--c---CceEEEEeCCCCCCccc-cccc-cc-cccCEEEE
Q 023913 158 NLGPLEELSNLFKADLLLCESGGD------NLAANFSREL--A---DYIIYIIDVSGGDKIPR-KGGP-GI-TQADLLVI 223 (275)
Q Consensus 158 ~~~~L~~l~~~~~~d~~~~eS~G~------~q~~~laral--~---~~~vlllD~t~g~d~~~-~~~~-~i-~~adiivl 223 (275)
.-..+.++.|. --|+.+-|+. + |-.++++|++..++... .... .. ...-++|+
T Consensus 265 -------------~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~ 331 (454)
T COG0486 265 -------------IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVL 331 (454)
T ss_pred -------------EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEE
Confidence 22222223332 2344444443 2 67889999877533221 1111 11 23458899
Q ss_pred ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
||+||.+. ...+.+ ++.++.+++.+|+++++|+++|.+-+
T Consensus 332 NK~DL~~~--~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i 371 (454)
T COG0486 332 NKADLVSK--IELESE-----KLANGDAIISISAKTGEGLDALREAI 371 (454)
T ss_pred echhcccc--cccchh-----hccCCCceEEEEecCccCHHHHHHHH
Confidence 99999987 232222 45566689999999999999987643
No 415
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.22 E-value=5.3e-11 Score=98.49 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=78.7
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
...++|+|++|||||||++.|.+..... . .+ ..|+-..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~--~~----------t~g~~~~------------------------- 51 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-----I--TP----------TQGFNIK------------------------- 51 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-----c--CC----------CCCcceE-------------------------
Confidence 5679999999999999999999862110 0 00 0010000
Q ss_pred HHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---------cccccccccCEEEEecCCC
Q 023913 161 PLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDL 228 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---------~~~~~i~~adiivlNK~Dl 228 (275)
.+ .....+..+.+++|+.+......... +..++++|.+....... +.......+-++++||+|+
T Consensus 52 ---~i-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 52 ---TV-QSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred ---EE-EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 00 00112333445666554333322222 45688888664221110 0001123566788999999
Q ss_pred CccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 229 ASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
... ...+.+.+.+... +...+++++|+++++|++++++++.
T Consensus 128 ~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 128 ATA--APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred ccC--CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 765 3344444433211 1123578999999999999998764
No 416
>PRK13768 GTPase; Provisional
Probab=99.22 E-value=9.9e-11 Score=104.10 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=105.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------H--HHHhcCCCccchH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------R--AVETGGCPHAAIR 152 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------~--~~~~~~~~~~~~~ 152 (275)
.++.+.|+.||||||+...++..+... .++.++..|++... ++|.+.... . +...+.+++....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~-------~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~ 75 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY-------LPYTPDFDVRDYVTAREIMKKYGLGPNGALI 75 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc-------CCCCCCcchhhheeHHHHHHHcCCCCchHHH
Confidence 478999999999999999999887766 46888777765321 112111110 1 1112223332221
Q ss_pred HH---HHH-HHHHHHHhhcccccccccccChhHHHHHH-------HHHHhc----CceEEEEeCCCCCCccc---c-c--
Q 023913 153 ED---ISI-NLGPLEELSNLFKADLLLCESGGDNLAAN-------FSRELA----DYIIYIIDVSGGDKIPR---K-G-- 211 (275)
Q Consensus 153 ~~---~~~-~~~~L~~l~~~~~~d~~~~eS~G~~q~~~-------laral~----~~~vlllD~t~g~d~~~---~-~-- 211 (275)
.. ... .....+.+ .....++++++++|+..... +.+.+. +..++|+|...+..... . .
T Consensus 76 ~~~~~~~~~~~~l~~~l-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~ 154 (253)
T PRK13768 76 ASVDLLLTKADEIKEEI-ESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLA 154 (253)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHH
Confidence 11 111 11122222 23345889999888644321 223332 46788889755432211 0 0
Q ss_pred ---cccccccCEEEEecCCCCccchhhHHHHHH----------------------------HHHhcCCCCCEEEEEecCC
Q 023913 212 ---GPGITQADLLVINKTDLASAIGADLAVMER----------------------------DALRMRDGGPFIFAQVGWV 260 (275)
Q Consensus 212 ---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~----------------------------~i~~~~~~~~ii~~S~~~~ 260 (275)
......+-++|+||+|+.+. .+.+.+.+ .++.+++..+++++|++++
T Consensus 155 ~~~~~~~~~~~i~v~nK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~ 232 (253)
T PRK13768 155 LSVQLRLGLPQIPVLNKADLLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG 232 (253)
T ss_pred HHHHHHcCCCEEEEEEhHhhcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC
Confidence 01245677999999999876 33333322 2445567779999999999
Q ss_pred cCHHHHhcccce
Q 023913 261 IGIIFTLSITHY 272 (275)
Q Consensus 261 ~g~~~l~~~~~~ 272 (275)
+|+++|++....
T Consensus 233 ~gl~~L~~~I~~ 244 (253)
T PRK13768 233 EGFDELYAAIQE 244 (253)
T ss_pred cCHHHHHHHHHH
Confidence 999999987643
No 417
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.22 E-value=3e-11 Score=97.57 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCCCccc--cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..++++|++....... ........+.++|+||+|+.+.. .. .......+++++|++++.|+++|++.+
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~--~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l 152 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDS--EL-------LSLLAGKPIIAISAKTGEGLDELKEAL 152 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcc--cc-------ccccCCCceEEEECCCCCCHHHHHHHH
Confidence 67888999875432211 11113456779999999998762 22 233446789999999999999999876
Q ss_pred ce
Q 023913 271 HY 272 (275)
Q Consensus 271 ~~ 272 (275)
..
T Consensus 153 ~~ 154 (157)
T cd04164 153 LE 154 (157)
T ss_pred HH
Confidence 54
No 418
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.20 E-value=1.2e-10 Score=100.02 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=57.3
Q ss_pred ccccccChhHHHHHHH-HHHhc--CceEEEEeCCCC-CCccc-cc---cccccc-cCEEEEecCCCCccchhhH----HH
Q 023913 172 DLLLCESGGDNLAANF-SRELA--DYIIYIIDVSGG-DKIPR-KG---GPGITQ-ADLLVINKTDLASAIGADL----AV 238 (275)
Q Consensus 172 d~~~~eS~G~~q~~~l-aral~--~~~vlllD~t~g-~d~~~-~~---~~~i~~-adiivlNK~Dl~~~~~~~~----~~ 238 (275)
...+.+++|+...... .+++. +..++++|++.+ ...+. .. ...... +-+||+||+|+... ... +.
T Consensus 84 ~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~~ 161 (203)
T cd01888 84 HVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYEQ 161 (203)
T ss_pred EEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHHH
Confidence 4456777775433222 22232 788999998753 22111 11 011222 24679999999864 222 33
Q ss_pred HHHHHHhc-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 239 MERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 239 ~~~~i~~~-~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+++.+... ....+++++|+++++|++++++.+.
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~ 195 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV 195 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 33333322 2357899999999999999998653
No 419
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.20 E-value=4.3e-11 Score=100.86 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=55.6
Q ss_pred cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---cccc------cccccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PRKG------GPGITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
+.+.+|+.+.-.+.+... +..++++|.+..... .... ......+-+|++||+|+... ...+.+++.
T Consensus 67 l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~~~~~~~ 144 (190)
T cd00879 67 TFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEEELRQA 144 (190)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCHHHHHHH
Confidence 344555443333333332 567778887643111 0000 01123566888999999754 344556555
Q ss_pred HHhcC--------------CCCCEEEEEecCCcCHHHHhcccce
Q 023913 243 ALRMR--------------DGGPFIFAQVGWVIGIIFTLSITHY 272 (275)
Q Consensus 243 i~~~~--------------~~~~ii~~S~~~~~g~~~l~~~~~~ 272 (275)
++... -..+++++|+++++|++++++++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 145 LGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred hCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 54211 1246899999999999999987653
No 420
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.19 E-value=3.1e-10 Score=91.02 Aligned_cols=76 Identities=13% Similarity=0.012 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCCCccc-cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 193 DYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..++++|.+....... .....+..+.++|+||+|+.+.. ...+.+++.+++.+ ..+++++|+++++|++++++.+
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEAD-VDIERAKELLETAG-AEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcc-cCHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHHH
Confidence 67788889765543221 11222344778899999997531 23444445554432 3479999999999999998765
No 421
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.18 E-value=8.6e-11 Score=109.92 Aligned_cols=141 Identities=20% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHh-ccccCchhH---
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR-NGALPEERI--- 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~-ig~v~q~~~--- 138 (275)
+|+...-.+-+--...+|.+++|+|+||-||||.+++|+|.+.|. |+.- .++ .+ .++.+. -|--.|+-.
T Consensus 83 RYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp-~w--deVi~~FrGtELq~YF~~l 156 (591)
T COG1245 83 RYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPP-SW--DEVIKRFRGTELQNYFKKL 156 (591)
T ss_pred eccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCC-CH--HHHHHHhhhhHHHHHHHHH
Confidence 455433333344445679999999999999999999999999998 7631 111 11 122221 111111110
Q ss_pred -----------HHHH-hcCCCccchHHHHHH------HHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913 139 -----------RAVE-TGGCPHAAIREDISI------NLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI 198 (275)
Q Consensus 139 -----------~~~~-~~~~~~~~~~~~~~~------~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll 198 (275)
.++. +......+..+.+.. ..+.++.+.+....++-+.+ |||+-||++||.+++ +.++++
T Consensus 157 ~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 157 YEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred HcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence 1111 000011112222211 23456677777778888888 999999999999999 999999
Q ss_pred Ee-CCCCCCcccc
Q 023913 199 ID-VSGGDKIPRK 210 (275)
Q Consensus 199 lD-~t~g~d~~~~ 210 (275)
+| |++.+|+..+
T Consensus 237 FDEpsSyLDi~qR 249 (591)
T COG1245 237 FDEPSSYLDIRQR 249 (591)
T ss_pred EcCCcccccHHHH
Confidence 99 8888997543
No 422
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.18 E-value=5.3e-11 Score=111.97 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=102.6
Q ss_pred CCCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCcc--ccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913 31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPI--LSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g 103 (275)
+.-+..+.++..+..+-+.+..|..+..|..+- +.....+-. ....-.+--.-|+|+|+++||||||||.|++
T Consensus 102 ~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~ 181 (390)
T PRK12298 102 GEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSA 181 (390)
T ss_pred CcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhC
Confidence 345667777777778888888888777666433 111111100 0111112233599999999999999999998
Q ss_pred ccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhH--
Q 023913 104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD-- 181 (275)
Q Consensus 104 ~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-- 181 (275)
.- +.+ ...+.++. ....|++.... ....++.+.+|.
T Consensus 182 ~k-----~~v-s~~p~TT~----~p~~Giv~~~~--------------------------------~~~i~~vDtPGi~~ 219 (390)
T PRK12298 182 AK-----PKV-ADYPFTTL----VPNLGVVRVDD--------------------------------ERSFVVADIPGLIE 219 (390)
T ss_pred Cc-----ccc-cCCCCCcc----CcEEEEEEeCC--------------------------------CcEEEEEeCCCccc
Confidence 62 212 22222211 11223221000 000111111111
Q ss_pred ------HHHHHHHHHhc--CceEEEEeCCCCC--Cccc---ccc---c-----cccccCEEEEecCCCCccchhhHHHHH
Q 023913 182 ------NLAANFSRELA--DYIIYIIDVSGGD--KIPR---KGG---P-----GITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 182 ------~q~~~laral~--~~~vlllD~t~g~--d~~~---~~~---~-----~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..-..+.+.+- +..++++|.+... +... ... . ....+.+||+||+|+... ..+....
T Consensus 220 ~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l 297 (390)
T PRK12298 220 GASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERA 297 (390)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHH
Confidence 01112223333 6677888865221 1111 000 1 124577999999999765 3333333
Q ss_pred HHHHhcCC-CCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRMRD-GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~~~-~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+.+.+..+ ..+++++|+++++|++++++.+.
T Consensus 298 ~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~ 329 (390)
T PRK12298 298 KAIVEALGWEGPVYLISAASGLGVKELCWDLM 329 (390)
T ss_pred HHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 33333333 34799999999999999987553
No 423
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.18 E-value=2.5e-11 Score=104.10 Aligned_cols=114 Identities=17% Similarity=0.043 Sum_probs=63.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHH------HhccccCchhHHHHHhcCCCccchHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL------MRNGALPEERIRAVETGGCPHAAIREDI 155 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~------~~ig~v~q~~~~~~~~~~~~~~~~~~~~ 155 (275)
.+.+|+|+|||||||||..|.-.+.........+. ...++. ..+.+.++...... .+..... .
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-----~~~~~i~~~~~~~~i~~~~~~~~~~~----~~~~~~~--~ 90 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-----SLKDLIKDGESSAKITVTLKNQGLDA----NPLCVLS--Q 90 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-----cHHHHhhCCCCeEEEEEEEEcCCccC----CcCCHHH--H
Confidence 38899999999999999999854432211000111 011111 12333443311000 1111111 1
Q ss_pred HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHh----c-CceEEEEe-CCCCCCccc
Q 023913 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL----A-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral----~-~~~vlllD-~t~g~d~~~ 209 (275)
..+.+.|+. ....+..+.. |+||+|++++|+++ + +|+++|+| |++++|...
T Consensus 91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 122223332 2234445555 99999999999988 4 89999999 888888654
No 424
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.16 E-value=9.9e-11 Score=100.00 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCCccc-----cccccc---cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-----~~~~~i---~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|.+....... ....++ ..+-++|+||+|+... .... ... .....+++++|++++.|++
T Consensus 122 d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~--~~~~---~~~--~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 122 DLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD--EELE---ERL--EAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred CeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh--HHHH---HHh--hcCCCceEEEEcCCCCCHH
Confidence 67888899765432111 111112 2345899999999765 2222 222 2345689999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++.+.
T Consensus 195 ~l~~~L~ 201 (204)
T cd01878 195 ELLEAIE 201 (204)
T ss_pred HHHHHHH
Confidence 9988654
No 425
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.16 E-value=2e-10 Score=94.18 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=58.9
Q ss_pred cccccccChhHHHHHHHHH---HhcCceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhH-HHHHHH
Q 023913 171 ADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADL-AVMERD 242 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~lar---al~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~-~~~~~~ 242 (275)
.+..+.+++|+..-..+.. ..++..++++|+..+...... .......+.++|+||+|+........ +.+.+.
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 129 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSEL 129 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHh
Confidence 4555666777533222211 223778999998775432211 11224567789999999875421111 112111
Q ss_pred HH----hcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 243 AL----RMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 243 i~----~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.. ......+++++|++++.|++++++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 130 GLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred hccccccccCcCcEEEeecccCCCHHHHHHHHH
Confidence 11 122346899999999999999988653
No 426
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.16 E-value=1.1e-10 Score=111.31 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=53.0
Q ss_pred CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~~ 265 (275)
+..|+++|++.+...+... ......+.+|++||||+.+. ...+.+.+.++... +.++++++||+++.|+++
T Consensus 257 d~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 257 DVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE--KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDK 334 (435)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH--HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHH
Confidence 7889999988775433221 11124677899999999854 34445554444322 468999999999999999
Q ss_pred Hhccc
Q 023913 266 TLSIT 270 (275)
Q Consensus 266 l~~~~ 270 (275)
+++..
T Consensus 335 l~~~i 339 (435)
T PRK00093 335 LLEAI 339 (435)
T ss_pred HHHHH
Confidence 98753
No 427
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.16 E-value=3e-10 Score=92.54 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=58.5
Q ss_pred ccccccChhHHHHHHHH-HHh--cCceEEEEeCCCCCCcccc----ccccccc-cCEEEEecCCCCccc--hhhHHHHHH
Q 023913 172 DLLLCESGGDNLAANFS-REL--ADYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAI--GADLAVMER 241 (275)
Q Consensus 172 d~~~~eS~G~~q~~~la-ral--~~~~vlllD~t~g~d~~~~----~~~~i~~-adiivlNK~Dl~~~~--~~~~~~~~~ 241 (275)
...+.+++|+....... ..+ ++..++++|...+...... ....... +-++++||+|+.... ....+.+.+
T Consensus 52 ~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~ 131 (164)
T cd04171 52 RLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRE 131 (164)
T ss_pred EEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHH
Confidence 34455677764432222 222 3788999998654222111 1111233 457889999997651 112234444
Q ss_pred HHHhcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913 242 DALRMR-DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 242 ~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.++... ...+++++|+++++|++++++.+.
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 132 LLAGTFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHhcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 444321 357899999999999999987653
No 428
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.15 E-value=1.6e-10 Score=106.54 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=104.7
Q ss_pred CCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCccc-ccccc-CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPIL-SRNFN-ERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~-~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-+..+.+|..+..+-+.+..|..+..|..+- ++..-+.-.. ...+. .--.-|+|+|+++|||||||+.|++.
T Consensus 101 ~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~ 180 (329)
T TIGR02729 101 ELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA 180 (329)
T ss_pred cEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcC
Confidence 34556666777777777777777776666433 1111111111 11122 22567899999999999999999985
Q ss_pred cCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhH---
Q 023913 105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD--- 181 (275)
Q Consensus 105 l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~--- 181 (275)
.+ .+...++.+..+ .+|++.-+ . .....+.+.+|+
T Consensus 181 ~~-----~va~y~fTT~~p-----~ig~v~~~--------~------------------------~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 181 KP-----KIADYPFTTLVP-----NLGVVRVD--------D------------------------GRSFVIADIPGLIEG 218 (329)
T ss_pred Cc-----cccCCCCCccCC-----EEEEEEeC--------C------------------------ceEEEEEeCCCcccC
Confidence 21 111111111111 12221000 0 001111111111
Q ss_pred -----HHHHHHHHHhc--CceEEEEeCCCCC--Cccc----------ccc-ccccccCEEEEecCCCCccchhhHHHHHH
Q 023913 182 -----NLAANFSRELA--DYIIYIIDVSGGD--KIPR----------KGG-PGITQADLLVINKTDLASAIGADLAVMER 241 (275)
Q Consensus 182 -----~q~~~laral~--~~~vlllD~t~g~--d~~~----------~~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~~ 241 (275)
.....+.+.+- +..++++|.+... +... .+. .....+-+||+||+|+... ...+.+.+
T Consensus 219 a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~ 296 (329)
T TIGR02729 219 ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLK 296 (329)
T ss_pred CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHH
Confidence 12222333332 6778888976431 1110 011 1124567899999999866 34444544
Q ss_pred HHHhcCCCCCEEEEEecCCcCHHHHhccccee
Q 023913 242 DALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 273 (275)
Q Consensus 242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~~ 273 (275)
.+.+.. ..+++++|+++++|++++++.+...
T Consensus 297 ~l~~~~-~~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 297 ELKKAL-GKPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred HHHHHc-CCcEEEEEccCCcCHHHHHHHHHHH
Confidence 444332 3679999999999999999876543
No 429
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.14 E-value=1.3e-10 Score=107.30 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=101.6
Q ss_pred CCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCcc-cccccc-CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPI-LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~-~~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-+..+.+|.++..+-+.+..|..|..|..+- +...-++-. ....+. +--.-|+|+|+++|||||||+.|++.
T Consensus 102 ~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a 181 (335)
T PRK12299 102 ELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA 181 (335)
T ss_pred cEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcC
Confidence 34556666777777777777777777766543 000001111 111122 22556999999999999999999985
Q ss_pred cCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHH
Q 023913 105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA 184 (275)
Q Consensus 105 l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~ 184 (275)
- | .+-...+.+..+ .+|++.-. ... .+...+-+-.+-..+.+....
T Consensus 182 ~-~----~va~ypfTT~~p-----~~G~v~~~--------~~~----------------~~~i~D~PGli~ga~~~~gLg 227 (335)
T PRK12299 182 K-P----KIADYPFTTLHP-----NLGVVRVD--------DYK----------------SFVIADIPGLIEGASEGAGLG 227 (335)
T ss_pred C-C----ccCCCCCceeCc-----eEEEEEeC--------CCc----------------EEEEEeCCCccCCCCccccHH
Confidence 2 2 111111111111 12221100 000 000000000000002111122
Q ss_pred HHHHHHhc--CceEEEEeCCCCCCc--cc-------ccc-ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCE
Q 023913 185 ANFSRELA--DYIIYIIDVSGGDKI--PR-------KGG-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 185 ~~laral~--~~~vlllD~t~g~d~--~~-------~~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~i 252 (275)
..+.+.+- +..|+++|.+..... .. .+. .....+-+||+||+|+.+......+.++...... ..++
T Consensus 228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~--~~~i 305 (335)
T PRK12299 228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL--GGPV 305 (335)
T ss_pred HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc--CCCE
Confidence 23333332 677888997643211 00 011 1124577899999999765211112222222222 4689
Q ss_pred EEEEecCCcCHHHHhcccc
Q 023913 253 IFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~~ 271 (275)
+++||++++|++++++.+.
T Consensus 306 ~~iSAktg~GI~eL~~~L~ 324 (335)
T PRK12299 306 FLISAVTGEGLDELLRALW 324 (335)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 9999999999999988764
No 430
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.13 E-value=8.9e-11 Score=111.58 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~~ 265 (275)
+..|+++|++.+...+... ......+.++|+||+|+... ....+.+.+.++... +..+++++||++|.|+++
T Consensus 256 d~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 256 DVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDK 334 (429)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHH
Confidence 7889999988765433221 11124677999999999832 144556665555443 468999999999999999
Q ss_pred Hhccc
Q 023913 266 TLSIT 270 (275)
Q Consensus 266 l~~~~ 270 (275)
+++..
T Consensus 335 l~~~i 339 (429)
T TIGR03594 335 LLDAI 339 (429)
T ss_pred HHHHH
Confidence 98753
No 431
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.13 E-value=2.1e-10 Score=91.59 Aligned_cols=77 Identities=21% Similarity=0.092 Sum_probs=53.4
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHH---HHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVM---ERDALRMRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~---~~~i~~~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|+......... .......+.++|+||+|+... ...... ........+..+++++|++++.|+++
T Consensus 77 d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE--EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh--hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 677888887766543322 122345677999999999876 333332 23344556788999999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
+++...
T Consensus 155 l~~~l~ 160 (163)
T cd00880 155 LREALI 160 (163)
T ss_pred HHHHHH
Confidence 987654
No 432
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.13 E-value=4e-11 Score=106.11 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=29.0
Q ss_pred cc-ChhHHHHHHHHHHhc-C----ceEEEEe-CCCCCCccc
Q 023913 176 CE-SGGDNLAANFSRELA-D----YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 176 ~e-S~G~~q~~~laral~-~----~~vlllD-~t~g~d~~~ 209 (275)
.+ |+||+|+++||++++ + |.++|+| |++++|...
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~ 194 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTN 194 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHH
Confidence 44 999999999999997 3 8999999 888988643
No 433
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.12 E-value=1.9e-10 Score=92.60 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCccchhhHHHHHHHHH--hc-CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLASAIGADLAVMERDAL--RM-RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~~-~~~~~ii~~S~~~~ 260 (275)
+..++++|.+....... ... .....+-++|+||+|+... ...+.+.+.+. .. ....+++++|++++
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHHhCcccccCCceEEEEEEeccC
Confidence 67788888765322110 000 0113355788999998765 23333333321 11 22357899999999
Q ss_pred cCHHHHhcccc
Q 023913 261 IGIIFTLSITH 271 (275)
Q Consensus 261 ~g~~~l~~~~~ 271 (275)
.|+++++..+.
T Consensus 147 ~gi~~l~~~l~ 157 (159)
T cd04159 147 TNIDIVLDWLI 157 (159)
T ss_pred CChHHHHHHHh
Confidence 99999987653
No 434
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.11 E-value=1.8e-10 Score=93.92 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=57.0
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCC---Cccc---cccc---cccccCEEEEecCCCCccchhhHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGD---KIPR---KGGP---GITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~---d~~~---~~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..+.+++|+.....++.... +..++++|..... .... .... ....+-++|+||+|+........+...
T Consensus 50 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~ 129 (164)
T cd04139 50 LNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAA 129 (164)
T ss_pred EEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHH
Confidence 34455666544333433333 6677888854321 1111 1111 134667899999999763212334444
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
...++. +.+++++|+++++|+++++..+.
T Consensus 130 ~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 130 NLARQW--GVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred HHHHHh--CCeEEEeeCCCCCCHHHHHHHHH
Confidence 444443 36899999999999999998654
No 435
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.11 E-value=2.6e-10 Score=94.78 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=57.3
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..+.+++|+...-.+.+... +..++++|.+....... .. ......+-+||+||+|+... ...+.+.
T Consensus 60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~ 137 (173)
T cd04154 60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIR 137 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHH
Confidence 34455667654333333333 67788999765421100 00 01123456888999999765 2344455
Q ss_pred HHHHhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913 241 RDALRM---RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 241 ~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+.+... ....+++++||++|.|++++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 138 EALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred HHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 444322 235689999999999999998764
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.10 E-value=3.4e-10 Score=121.65 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=37.2
Q ss_pred HHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc----CceEEEEe-CCCCCCccc
Q 023913 161 PLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 161 ~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~----~~~vlllD-~t~g~d~~~ 209 (275)
.|+.++..+. .+..+.+ |+||+||+.||++|+ +|.++||| |++++|...
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~ 847 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence 4444444432 4555566 999999999999995 79999999 899988543
No 437
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.09 E-value=3.7e-10 Score=92.85 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=47.9
Q ss_pred CceEEEEeCCCCCCc----ccc----ccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKI----PRK----GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~----~~~----~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..|+++|++..... ... ....+ ..+-++|+||+|+... .......+.. .. +..+++++|+++++|+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~--~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF--EDLSEIEEEE-EL-EGEEVLKISTLTEEGV 156 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch--hhHHHHHHhh-hh-ccCceEEEEecccCCH
Confidence 677888997653211 000 11111 4566889999999765 3333322222 22 3578999999999999
Q ss_pred HHHhcccce
Q 023913 264 IFTLSITHY 272 (275)
Q Consensus 264 ~~l~~~~~~ 272 (275)
+++++.+..
T Consensus 157 ~~l~~~l~~ 165 (168)
T cd01897 157 DEVKNKACE 165 (168)
T ss_pred HHHHHHHHH
Confidence 999986543
No 438
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.09 E-value=5.6e-10 Score=105.37 Aligned_cols=141 Identities=19% Similarity=0.126 Sum_probs=102.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC-CCCChHHHHH-hccccCchhH-------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLM-RNGALPEERI------- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~-~~~~~~~~~~-~ig~v~q~~~------- 138 (275)
.++.+.++....||+++|.|-.|-|-+.|+.+|+|+.++. |+|.+.+.++ +...+.++++ .++|+|+++.
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 4555666666779999999999999999999999998776 9999999997 4445555544 6899999972
Q ss_pred ----HHHHhcCCC---c-----cchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 139 ----RAVETGGCP---H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 139 ----~~~~~~~~~---~-----~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
+|..++... . ....+....+.+.+++|.... ........ |||.+||+-+||.|. +|+++|+. ||
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT 431 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence 222222111 1 111222234455677775553 33444445 999999999999999 89999999 99
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
.|+|.-+
T Consensus 432 rGLDvgA 438 (501)
T COG3845 432 RGLDVGA 438 (501)
T ss_pred ccccHHH
Confidence 9999743
No 439
>PRK14974 cell division protein FtsY; Provisional
Probab=99.09 E-value=9e-10 Score=101.53 Aligned_cols=172 Identities=20% Similarity=0.281 Sum_probs=101.6
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--hHHH-H
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IRED-I 155 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~~~~-~ 155 (275)
+..+++++|+||+||||++..|+..+... .++.+...|.......+..+..+ ...+.+... ...+ .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a----------~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHA----------ERLGVKVIKHKYGADPA 208 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHH----------HHcCCceecccCCCCHH
Confidence 35799999999999999999999988776 57888776644221111111100 001111100 0001 1
Q ss_pred HHHHHHHHHhhcccccccccccChhHHH-----HHHH---HHHhc-CceEEEEeCCCCCCcccccc--ccccccCEEEEe
Q 023913 156 SINLGPLEELSNLFKADLLLCESGGDNL-----AANF---SRELA-DYIIYIIDVSGGDKIPRKGG--PGITQADLLVIN 224 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q-----~~~l---aral~-~~~vlllD~t~g~d~~~~~~--~~i~~adiivlN 224 (275)
....++++.. .....|.+++++.|..+ ...+ .+.+. +..++++|++.+.+...... ...-..+-+|+|
T Consensus 209 ~v~~~ai~~~-~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 209 AVAYDAIEHA-KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HHHHHHHHHH-HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 1122233332 23457889999777542 1122 22222 56788999988876543221 111245899999
Q ss_pred cCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 225 KTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 225 K~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
|.|.....+..+..+.. -+.||.+++ +|+++++|....
T Consensus 288 KlD~~~~~G~~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~~~~ 325 (336)
T PRK14974 288 KVDADAKGGAALSIAYV------IGKPILFLG--VGQGYDDLIPFD 325 (336)
T ss_pred eecCCCCccHHHHHHHH------HCcCEEEEe--CCCChhhcccCC
Confidence 99998776666555432 268899988 699998887643
No 440
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.08 E-value=3.3e-10 Score=108.51 Aligned_cols=140 Identities=22% Similarity=0.114 Sum_probs=82.1
Q ss_pred ccccccCCCCCCCCCCcc-ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
+++++.-|+ +...+. +-++-..+|.-+.|+||||||||+|++.|.|+.+-. |++..-. +.+ + +.+-|
T Consensus 437 e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~-~~~---~----~~lff 505 (659)
T KOG0060|consen 437 EEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT-DGG---P----KDLFF 505 (659)
T ss_pred eeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecc-cCC---C----CceEE
Confidence 777888888 433333 344445779999999999999999999999999866 7665322 111 1 34667
Q ss_pred cCchhH-------HHHHhc---CCCcc--chHHHHHHHHH--HHHHh-hcccccccc----ccc--ChhHHHHHHHHHHh
Q 023913 133 LPEERI-------RAVETG---GCPHA--AIREDISINLG--PLEEL-SNLFKADLL----LCE--SGGDNLAANFSREL 191 (275)
Q Consensus 133 v~q~~~-------~~~~~~---~~~~~--~~~~~~~~~~~--~L~~l-~~~~~~d~~----~~e--S~G~~q~~~laral 191 (275)
+||.|- +++... ...-. ...+++.+.++ .|..+ ....++|.. -.+ |+|++||+++||.+
T Consensus 506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 888762 111000 00000 00111111111 11111 112233311 122 99999999999999
Q ss_pred c-CceEEEEe-CCCCC
Q 023913 192 A-DYIIYIID-VSGGD 205 (275)
Q Consensus 192 ~-~~~vlllD-~t~g~ 205 (275)
. +|++.+|| +|+..
T Consensus 586 y~kPk~AiLDE~TSAv 601 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAV 601 (659)
T ss_pred hcCCceEEeechhhhc
Confidence 8 89999999 44443
No 441
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.08 E-value=1.1e-10 Score=100.14 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=28.1
Q ss_pred ChhHHHHHHHHHHhcCceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELADYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~~~~vlllD-~t~g~d~~~ 209 (275)
|+||+|+..+++++.+|+++++| |+.++|...
T Consensus 93 s~g~~~~~~i~~~~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 93 SSHMKNIARILQHADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH
Confidence 99999999999887799999999 888888654
No 442
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.07 E-value=6.3e-11 Score=97.67 Aligned_cols=71 Identities=23% Similarity=0.161 Sum_probs=47.5
Q ss_pred CceEEEEeCCCCCCcccc--ccccccccCEEEEecCCCCccchh--hHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGA--DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~--~~~~i~~adiivlNK~Dl~~~~~~--~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..|+++|+++....... ....+..+-++++||+|++...+. +.+.+.+.+ +.|++++|+++++|++++.+
T Consensus 80 D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL-----GVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHh
Confidence 567788898764221110 012246788999999999876432 345555444 57899999999999999976
No 443
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.07 E-value=8.7e-10 Score=96.33 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=62.7
Q ss_pred cccccccChhHHHHHHH-HHHh----cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccc--hhhHHHH
Q 023913 171 ADLLLCESGGDNLAANF-SREL----ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAI--GADLAVM 239 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~l-aral----~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~--~~~~~~~ 239 (275)
....+++++|......- .+++ .+..++++|+..+...+.+. ......+-++|+||+|+.+.. ...++.+
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l 163 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDL 163 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHH
Confidence 34556677786543322 2233 26778999987765433221 122345668999999997651 1223333
Q ss_pred HHHHHh------------------------cCCCCCEEEEEecCCcCHHHHhccccee
Q 023913 240 ERDALR------------------------MRDGGPFIFAQVGWVIGIIFTLSITHYI 273 (275)
Q Consensus 240 ~~~i~~------------------------~~~~~~ii~~S~~~~~g~~~l~~~~~~~ 273 (275)
.+.++. .....|||.+|+.+|+|+++++..+..+
T Consensus 164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 333331 1123589999999999999999877654
No 444
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.07 E-value=2.5e-10 Score=93.35 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=59.3
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cc-c--cc---ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KG-G--PG---ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~-~--~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+..-..+.+... +..++++|++....... .. . .+ -..+-+++.||+|+........+.+...
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF 131 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence 3455677654444444444 67888999876432111 11 0 01 1345678899999976422233444445
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+... .+++++|++++.|++++++.+.
T Consensus 132 ~~~~~--~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 132 AQENG--LLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred HHHcC--CEEEEEECCCCCCHHHHHHHHH
Confidence 55443 7899999999999999987653
No 445
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.06 E-value=6.1e-10 Score=91.18 Aligned_cols=76 Identities=16% Similarity=0.044 Sum_probs=46.9
Q ss_pred CceEEEEeCCCCCCc--ccc----ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKI--PRK----GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~--~~~----~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+..... ... ... ....+-++|.||+|+........+...+..+.. ..+++++|++++.|+
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i 150 (164)
T smart00173 73 EGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQW--GCPFLETSAKERVNV 150 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHc--CCEEEEeecCCCCCH
Confidence 677888887653211 000 000 013455788999999764222333444444443 378999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 151 ~~l~~~l 157 (164)
T smart00173 151 DEAFYDL 157 (164)
T ss_pred HHHHHHH
Confidence 9998754
No 446
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.06 E-value=1.2e-09 Score=105.29 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCc--cccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913 31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP--ILSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g 103 (275)
+.-+..++.+..+..+-+.+..|..|..|..+- ....-++- ....+-.+--.-|+|+|+++|||||||+.|++
T Consensus 102 ~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 102 GEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSA 181 (500)
T ss_pred CcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhc
Confidence 345677778888888888888888777776544 11111111 11222223356799999999999999999998
Q ss_pred c
Q 023913 104 F 104 (275)
Q Consensus 104 ~ 104 (275)
.
T Consensus 182 a 182 (500)
T PRK12296 182 A 182 (500)
T ss_pred C
Confidence 6
No 447
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.06 E-value=3.3e-10 Score=92.52 Aligned_cols=52 Identities=13% Similarity=-0.065 Sum_probs=36.8
Q ss_pred ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+-++|.||+|+.+......+......++. +.+++++|+++++|++++++.+
T Consensus 111 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 111 IVVVVCANKIDLTKHRAVSEDEGRLWAESK--GFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred ceEEEEEEchhcccccccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHH
Confidence 456888999999743222344444444443 3779999999999999998864
No 448
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.06 E-value=6.3e-10 Score=107.36 Aligned_cols=77 Identities=17% Similarity=0.036 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCCCccccc-ccc---ccccCEEEEecCCCCccchhhHHHHHHHHHh---cCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRKG-GPG---ITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~-~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~---~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..|+++|++.+...+... ..+ ...+-+||+||+|+... .....+.+.+.+ ..+.++++++||++|.|+++
T Consensus 295 d~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 295 EVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE--DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDK 372 (472)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHH
Confidence 7889999988764332211 111 23466889999999864 222223333322 12458999999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
++..+.
T Consensus 373 lf~~i~ 378 (472)
T PRK03003 373 LVPALE 378 (472)
T ss_pred HHHHHH
Confidence 988654
No 449
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.06 E-value=8.3e-10 Score=103.61 Aligned_cols=141 Identities=21% Similarity=0.193 Sum_probs=88.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (275)
++++|+|++..|||||+|.|+|. +++++..-++.++|.-.. .+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-----r~AIV~D~pGvTRDr~y~--~~------------------------------ 46 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-----RIAIVSDTPGVTRDRIYG--DA------------------------------ 46 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----eeeEeecCCCCccCCccc--ee------------------------------
Confidence 68999999999999999999998 788888777766552110 00
Q ss_pred HHHhhcccccccccccChhH------------HHHHHHHHHhcCceEEEEeCCCCCCcccc----ccccccccCEEEEec
Q 023913 162 LEELSNLFKADLLLCESGGD------------NLAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINK 225 (275)
Q Consensus 162 L~~l~~~~~~d~~~~eS~G~------------~q~~~laral~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK 225 (275)
........+++++|. ++.+..|..-+|..++++|...|...... .......+-++|+||
T Consensus 47 -----~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK 121 (444)
T COG1160 47 -----EWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNK 121 (444)
T ss_pred -----EEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEc
Confidence 001111222222221 22233333344889999998887654332 212234677999999
Q ss_pred CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+|-... + +.+ ...-.+ ...+++++||..|.|+.+|++.+
T Consensus 122 ~D~~~~---e-~~~-~efysl-G~g~~~~ISA~Hg~Gi~dLld~v 160 (444)
T COG1160 122 IDNLKA---E-ELA-YEFYSL-GFGEPVPISAEHGRGIGDLLDAV 160 (444)
T ss_pred ccCchh---h-hhH-HHHHhc-CCCCceEeehhhccCHHHHHHHH
Confidence 997633 1 111 111122 35789999999999999998743
No 450
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.05 E-value=7.8e-10 Score=94.61 Aligned_cols=153 Identities=17% Similarity=0.102 Sum_probs=84.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L 162 (275)
.++|+|..++|||||++.|++.....|+....+.......+.+..+.+..-. ..
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--------------------------~~ 57 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--------------------------AH 57 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--------------------------ee
Confidence 4899999999999999999986433344332221111112222222221100 00
Q ss_pred HHhhcccccccccccChhHHHHHHHH-HHh--cCceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchh
Q 023913 163 EELSNLFKADLLLCESGGDNLAANFS-REL--ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGA 234 (275)
Q Consensus 163 ~~l~~~~~~d~~~~eS~G~~q~~~la-ral--~~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~ 234 (275)
..+ ........+++++|......-+ +++ ++..++++|+..+...+.+. ......+. ++++||+|+.... .
T Consensus 58 ~~~-~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~-~ 135 (195)
T cd01884 58 VEY-ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE-E 135 (195)
T ss_pred eEe-cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH-H
Confidence 011 1123345677788865543322 233 38899999988775443221 11233443 4779999997531 2
Q ss_pred hH----HHHHHHHHhc--C-CCCCEEEEEecCCcCH
Q 023913 235 DL----AVMERDALRM--R-DGGPFIFAQVGWVIGI 263 (275)
Q Consensus 235 ~~----~~~~~~i~~~--~-~~~~ii~~S~~~~~g~ 263 (275)
.. +++.+.++++ + ...+|+++|+++|.+.
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 22 2344455543 2 2589999999998864
No 451
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.05 E-value=1e-09 Score=91.57 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=54.9
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--c----c---cccccccCEEEEecCCCCccchhhHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--K----G---GPGITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~----~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..+.+++|+.+-..+..... +..++++|.+....... . . ......+-+++.||+|+........+...
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~ 130 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK 130 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH
Confidence 34555666543333322222 67888888776432111 0 0 01123467899999998643211222233
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
...+.. ..+++++|++++.|+++++..+
T Consensus 131 ~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 131 ELAESW--GAAFLESSARENENVEEAFELL 158 (180)
T ss_pred HHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 333332 3689999999999999988754
No 452
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=9.6e-11 Score=100.00 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=95.6
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCC-----cEEEEeccCCCCChHHHHH----hccccCchh
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKY-----SLAAVTNDIFTKEDGEFLM----RNGALPEER 137 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-----~i~i~~~d~~~~~~~~~~~----~ig~v~q~~ 137 (275)
.-+++..++....+||+-+++|.+|||||-+.+.|+|..+..- +..+...|+-+..+.++++ .++++||++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 4466777777778899999999999999999999999877543 3445555555566666554 467899987
Q ss_pred HHHHH---------hcCCCccchH----HH----HHHHHHHHHHhhcccc---ccccccc-ChhHHHHHHHHHHhc-Cce
Q 023913 138 IRAVE---------TGGCPHAAIR----ED----ISINLGPLEELSNLFK---ADLLLCE-SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 138 ~~~~~---------~~~~~~~~~~----~~----~~~~~~~L~~l~~~~~---~d~~~~e-S~G~~q~~~laral~-~~~ 195 (275)
...+. .-..+.-+++ +. ..++.+.|.+++..+- ...+..| +.|+.|+++||.|++ +|.
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCc
Confidence 31110 1111222221 11 1334456666655442 2334555 999999999999999 899
Q ss_pred EEEEe-CCCCCCcc
Q 023913 196 IYIID-VSGGDKIP 208 (275)
Q Consensus 196 vlllD-~t~g~d~~ 208 (275)
++|.| ||+.++..
T Consensus 179 LLIADEPTN~~e~~ 192 (330)
T COG4170 179 LLIADEPTNSMEPT 192 (330)
T ss_pred eEeccCCCcccCcc
Confidence 99999 77777653
No 453
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.04 E-value=6.8e-10 Score=90.60 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=52.8
Q ss_pred ccChhHHHHHHHHHHhc---CceEEEEeCCCCCC---cccc---c---cccccccCEEEEecCCCCccchhhHHHHHHHH
Q 023913 176 CESGGDNLAANFSRELA---DYIIYIIDVSGGDK---IPRK---G---GPGITQADLLVINKTDLASAIGADLAVMERDA 243 (275)
Q Consensus 176 ~eS~G~~q~~~laral~---~~~vlllD~t~g~d---~~~~---~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i 243 (275)
.+++|+.+-..+..... +..++++|.+.... .... . ...-..+-++|.||+|+........+...+..
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 133 (163)
T cd04136 54 LDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA 133 (163)
T ss_pred EECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH
Confidence 44556443323333332 67788888654321 1100 0 00113455788999999754212223333333
Q ss_pred HhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 244 LRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 244 ~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+..+ .+++++|++++.|+++++..+.
T Consensus 134 ~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 134 RQWG--CPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred HHcC--CeEEEecCCCCCCHHHHHHHHH
Confidence 3332 7899999999999999998654
No 454
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.04 E-value=4e-11 Score=101.51 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=63.0
Q ss_pred ccccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccc-hhhHHHHHH
Q 023913 170 KADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAI-GADLAVMER 241 (275)
Q Consensus 170 ~~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~-~~~~~~~~~ 241 (275)
.....+++++|... .-...+++ +|..|+++|+..|...+... ......+-+|++||+|+.... ....+++.+
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKE 148 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHH
Confidence 34555667777543 22233333 38899999999886654321 123356678889999998431 112233332
Q ss_pred HH-HhcC--C--CCCEEEEEecCCcCHHHHhcccc
Q 023913 242 DA-LRMR--D--GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 242 ~i-~~~~--~--~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+ +... + ..|++++|+++|.|+++|++.+.
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence 22 2221 1 36899999999999999998654
No 455
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.04 E-value=9e-10 Score=111.23 Aligned_cols=76 Identities=14% Similarity=-0.070 Sum_probs=52.4
Q ss_pred CceEEEEeCCCCCCccccc-c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~-~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|++.+...+... . .....+-+||+||+|+.+. ...+.+++.++.. .+.++++++||++|.|+++
T Consensus 534 dvvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 534 ELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNR 611 (712)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHH
Confidence 6788999988775433211 1 1124677899999999865 3344454444432 3568899999999999999
Q ss_pred Hhccc
Q 023913 266 TLSIT 270 (275)
Q Consensus 266 l~~~~ 270 (275)
+++..
T Consensus 612 L~~~i 616 (712)
T PRK09518 612 LAPAM 616 (712)
T ss_pred HHHHH
Confidence 98854
No 456
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.04 E-value=6.8e-10 Score=90.51 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=54.6
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc------ccc--ccc---ccccCEEEEecCCCCccchhhHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP------RKG--GPG---ITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~------~~~--~~~---i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
.+.+++|+.+-..+..... +..|+++|.+...... ... ... -..+-+||+||+|+... ...+.+
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~ 125 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKI 125 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHH
Confidence 3455566543323322222 6788889976543110 000 001 13566899999999765 223334
Q ss_pred HHHHH--hcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913 240 ERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 240 ~~~i~--~~~-~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.+. .+. ...+++++|+++++|++++++++.
T Consensus 126 ~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 126 TQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 33332 111 124589999999999999998753
No 457
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.03 E-value=1.5e-09 Score=88.54 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=58.4
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc---c------cccccccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~---~------~~~~~i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+..-..+...++ +..++++|.+...... . .....-..+-++|.||+|+.... ...+..
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~~~ 128 (161)
T cd01863 50 KLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTREEG 128 (161)
T ss_pred EEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHHHH
Confidence 344556777554444444443 6788888976432111 0 01111234568999999997432 233444
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+..+.. ..+++++|++++.|++++++.+
T Consensus 129 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 129 LKFARKH--NMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred HHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence 4444443 5789999999999999998754
No 458
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.03 E-value=6.1e-10 Score=89.44 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=58.5
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
+..+.+++|+..-..+...++ +..++++|+........ ..... -..+-++++||+|+........+.+.
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 129 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQ 129 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHH
Confidence 344555666554444444444 67888999765321110 01011 12455788999999633223344554
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+.... ...+++++|++++.|++++++.+
T Consensus 130 ~~~~~--~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 130 QFAKE--NGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred HHHHH--cCCeEEEEecCCCCCHHHHHHHH
Confidence 44444 35789999999999999998764
No 459
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.03 E-value=8.3e-10 Score=93.61 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=60.0
Q ss_pred cccccccChhHHHHH-HHHHH--hcCceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccc--hhhHHHHHH
Q 023913 171 ADLLLCESGGDNLAA-NFSRE--LADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GADLAVMER 241 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~-~lara--l~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~--~~~~~~~~~ 241 (275)
....+.+++|+.... .+.++ .++..++++|++.+...... .......+-++++||+|+.... ....+.+.+
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 445566777864311 11122 23788999998876533221 1111234557899999997541 112334444
Q ss_pred HHHhc-----CCCCCEEEEEecCCcCHHHHhccc
Q 023913 242 DALRM-----RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 242 ~i~~~-----~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+... ....+++++|+++++|++++++.+
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l 181 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDL 181 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHH
Confidence 33322 346789999999999999998754
No 460
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.03 E-value=1.3e-09 Score=112.14 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=32.6
Q ss_pred ccccccc-ChhHHHHHHHHHHhc-Cc---eEEEEe-CCCCCCccc
Q 023913 171 ADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPR 209 (275)
Q Consensus 171 ~d~~~~e-S~G~~q~~~laral~-~~---~vlllD-~t~g~d~~~ 209 (275)
.+..+.+ |+||+||+.||++|+ +| .++||| |++++|...
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~ 868 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED 868 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH
Confidence 3445555 999999999999999 67 899999 899998754
No 461
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.02 E-value=1.6e-09 Score=91.35 Aligned_cols=144 Identities=18% Similarity=0.119 Sum_probs=80.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
.+...++|+|++|||||||++.+.+-- .... .+ +... .+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~-----~~~~--~~-t~~~-----~~~--------------------------- 54 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR-----LAQH--QP-TQHP-----TSE--------------------------- 54 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCC-----Cccc--CC-cccc-----ceE---------------------------
Confidence 445789999999999999999998741 1000 00 0000 000
Q ss_pred HHHHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecC
Q 023913 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKT 226 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~ 226 (275)
.+ ........+.+.+|+.....+..... +..|+++|.+....... ... ..-..+-+||+||+
T Consensus 55 -----~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~ 128 (184)
T smart00178 55 -----EL-AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKI 128 (184)
T ss_pred -----EE-EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCc
Confidence 00 00112334455666543322322322 67888889765321110 000 01234668899999
Q ss_pred CCCccchhhHHHHHHHHHhcC----------CCCCEEEEEecCCcCHHHHhccc
Q 023913 227 DLASAIGADLAVMERDALRMR----------DGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 227 Dl~~~~~~~~~~~~~~i~~~~----------~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
|+... ...+++++.+.-.. +...|+++|+++++|++++++++
T Consensus 129 Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 129 DAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred cccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 98644 23455555543111 23469999999999999999876
No 462
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.02 E-value=1.1e-09 Score=90.06 Aligned_cols=99 Identities=11% Similarity=0.004 Sum_probs=58.8
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccc------cccccCEEEEecCCCCccchhhHHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
...+.+++|+.+-..+...+. +..++++|++....... .... ....+-++|.||+|+........+.+.
T Consensus 53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 132 (165)
T cd01864 53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEAC 132 (165)
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHH
Confidence 344556777655444444443 67888899765421111 1101 112345789999999755322334444
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+..+. .....++++|+++++|+++++..+.
T Consensus 133 ~~~~~-~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 133 TLAEK-NGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred HHHHH-cCCcEEEEEECCCCCCHHHHHHHHH
Confidence 44443 3335689999999999999987653
No 463
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.02 E-value=6.6e-10 Score=105.60 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=81.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
.++++-.|. .+..+..-.+...+|--+.|+||||||||+|+++|.|+.+-.......- + ..++-|+|
T Consensus 485 enIpvItP~---~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P------~----~~~mFYIP 551 (728)
T KOG0064|consen 485 ENIPVITPA---GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP------R----PNNIFYIP 551 (728)
T ss_pred ecCceeccC---cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC------C----CcceEecc
Confidence 677777787 5555555555567799999999999999999999999987442222211 1 12478888
Q ss_pred chhHHHHHhcCCCcc------ch---------HHHHHHHHH--HHHHhhccc-cccccc--cc--ChhHHHHHHHHHHhc
Q 023913 135 EERIRAVETGGCPHA------AI---------REDISINLG--PLEELSNLF-KADLLL--CE--SGGDNLAANFSRELA 192 (275)
Q Consensus 135 q~~~~~~~~~~~~~~------~~---------~~~~~~~~~--~L~~l~~~~-~~d~~~--~e--S~G~~q~~~laral~ 192 (275)
|.|-.- .|-.+. +. .+++..++. -|+.+..+. +++.+- .+ |+|++||+.+||.+.
T Consensus 552 QRPYms---~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 552 QRPYMS---GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred CCCccC---cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 876210 111000 00 112222222 122222222 233221 12 999999999999999
Q ss_pred -CceEEEEe-CCCCC
Q 023913 193 -DYIIYIID-VSGGD 205 (275)
Q Consensus 193 -~~~vlllD-~t~g~ 205 (275)
.|...+|| +|+..
T Consensus 629 HrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 629 HRPKYALLDECTSAV 643 (728)
T ss_pred cCcchhhhhhhhccc
Confidence 79999999 55543
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.02 E-value=2.2e-10 Score=100.93 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=86.4
Q ss_pred EEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCCccchHH---
Q 023913 86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAAIRE--- 153 (275)
Q Consensus 86 IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~~~~~~~--- 153 (275)
|+||.||||||+.+.+...+... .++.+++-|++... ..|-|.-.+ .+.+.+..|+..+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~-------~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me 73 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVEN-------LPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCME 73 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S---------SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcc-------cccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHH
Confidence 68999999999999999998876 67899998987532 112111110 112233334333211
Q ss_pred ----HHHHHHHHHHHhhcccccccccccChhHHHHH-------HHHHHhc-C---ceEEEEeCCCCCCcccccc------
Q 023913 154 ----DISINLGPLEELSNLFKADLLLCESGGDNLAA-------NFSRELA-D---YIIYIIDVSGGDKIPRKGG------ 212 (275)
Q Consensus 154 ----~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~-------~laral~-~---~~vlllD~t~g~d~~~~~~------ 212 (275)
.+.+..+.++.. ..++++.+++||-..- .|...|. + ..|.|+|.....+. .++.
T Consensus 74 ~l~~~~d~l~~~i~~~----~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~-~~f~s~~L~s 148 (238)
T PF03029_consen 74 YLEENIDWLDEEIEKY----EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDP-SKFVSSLLLS 148 (238)
T ss_dssp HHGGGHHHHHHHHHHH----H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc----CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccCh-hhHHHHHHHH
Confidence 112222222222 3488889999975432 2223333 1 46778886655442 2221
Q ss_pred ----ccccccCEEEEecCCCCccch-hh-----------------HHHHHHHHHhc---CCCC-CEEEEEecCCcCHHHH
Q 023913 213 ----PGITQADLLVINKTDLASAIG-AD-----------------LAVMERDALRM---RDGG-PFIFAQVGWVIGIIFT 266 (275)
Q Consensus 213 ----~~i~~adiivlNK~Dl~~~~~-~~-----------------~~~~~~~i~~~---~~~~-~ii~~S~~~~~g~~~l 266 (275)
..++.+-+.|+||+|+++... .. ...+.+.+.++ .... +++++|+++++|++++
T Consensus 149 ~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 149 LSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp HHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHH
T ss_pred HHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHH
Confidence 124678899999999998310 00 11222222222 1234 8999999999999999
Q ss_pred hcccc
Q 023913 267 LSITH 271 (275)
Q Consensus 267 ~~~~~ 271 (275)
+....
T Consensus 229 ~~~id 233 (238)
T PF03029_consen 229 LAAID 233 (238)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 465
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.02 E-value=1.4e-09 Score=88.90 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=57.0
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+..-....+.++ +..++++|++....... ..... -..+-++++||+|+.+......+.+.+.
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 132 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEY 132 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHH
Confidence 3445556443333333333 67888889875432111 11011 1233477899999875422344455555
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+..+ .+++++|++++.|++++++.+.
T Consensus 133 ~~~~~--~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 133 ADENG--LLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred HHHcC--CEEEEEECCCCCCHHHHHHHHH
Confidence 55543 7799999999999999998654
No 466
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.01 E-value=1e-09 Score=90.60 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=38.8
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
..+-++|+||+|+.+. .................+++++|++++.|++++++.+.
T Consensus 120 ~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 120 AKPVIYVLNKIDLDDA--EELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred hCCeEEEEEchhcCch--hHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 5678999999999866 23332212233344567899999999999999988654
No 467
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.01 E-value=7.6e-10 Score=99.33 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCCCccc------------cccc-cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913 193 DYIIYIIDVSGGDKIPR------------KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 259 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~------------~~~~-~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~ 259 (275)
+.-++++|...+.+... .+.. ....+-+||+||+|+.+. +...+.+..+.+ +...|+++||+.
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~l-q~~~V~pvsA~~ 351 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRL-QNPHVVPVSAKS 351 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHc-CCCcEEEeeecc
Confidence 45677888666533211 1111 124567999999998644 222222222222 344799999999
Q ss_pred CcCHHHHhccc
Q 023913 260 VIGIIFTLSIT 270 (275)
Q Consensus 260 ~~g~~~l~~~~ 270 (275)
++|++++++-+
T Consensus 352 ~egl~~ll~~l 362 (366)
T KOG1489|consen 352 GEGLEELLNGL 362 (366)
T ss_pred ccchHHHHHHH
Confidence 99999998754
No 468
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.01 E-value=1.7e-09 Score=87.30 Aligned_cols=72 Identities=21% Similarity=0.130 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..++++|+......... .......+-++|+||+|+... ... ...+..+. ..+++++|++++.|++++++
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~---~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE--EDE---AAEFYSLG-FGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh--HHH---HHHHHhcC-CCCeEEEecccCCCHHHHHH
Confidence 678888897654322111 111224566899999999875 221 22333332 34789999999999999987
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 152 ~l 153 (157)
T cd01894 152 AI 153 (157)
T ss_pred HH
Confidence 54
No 469
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.00 E-value=1.6e-09 Score=88.54 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=55.7
Q ss_pred cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cccccc-------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPG-------ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
+.+++|+.+.-.+..... +..++++|.+...... ...... -..+-+|++||+|+........+...+.
T Consensus 54 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~ 133 (164)
T cd04145 54 ILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL 133 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH
Confidence 345566544333333333 6788888876532111 000001 1335588999999975422233344444
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.. +.+++++|++++.|++++++.+.
T Consensus 134 ~~~~--~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 134 ARKL--KIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred HHHc--CCcEEEeeCCCCCCHHHHHHHHH
Confidence 4443 46899999999999999987654
No 470
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.00 E-value=1.2e-09 Score=89.10 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=54.2
Q ss_pred ccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHH
Q 023913 174 LLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMER 241 (275)
Q Consensus 174 ~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~ 241 (275)
.+.+++|+.+...+.+. +. +..|+++|.+....... .. ...-..+-++|+||+|+... ...+++..
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~ 124 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITR 124 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHH
Confidence 34446665443332222 22 67788999765431110 00 00124566899999998654 22334443
Q ss_pred HHH--hcC--CCCCEEEEEecCCcCHHHHhccc
Q 023913 242 DAL--RMR--DGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 242 ~i~--~~~--~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+. .+. ...+++++||++++|+++++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 125 RFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred HcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 332 221 23468999999999999998765
No 471
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.00 E-value=3.2e-09 Score=106.43 Aligned_cols=168 Identities=21% Similarity=0.197 Sum_probs=95.4
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI 155 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~ 155 (275)
.+|++++|+||||+||||++..|++.+... | +|.++..|.... |.+.|-. .+-...+.+..... +.
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Ri---------gA~eQL~-~~a~~~gvpv~~~~-~~ 251 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRI---------GALEQLR-IYGRILGVPVHAVK-DA 251 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccch---------HHHHHHH-HHHHhCCCCccccC-CH
Confidence 458899999999999999999999987543 4 688877765322 2211110 11111222221111 11
Q ss_pred HHHHHHHHHhhcccccccccccChhHHHH----HHHHHHhc-----CceEEEEeCCCCCCcccccccccc-----ccCEE
Q 023913 156 SINLGPLEELSNLFKADLLLCESGGDNLA----ANFSRELA-----DYIIYIIDVSGGDKIPRKGGPGIT-----QADLL 221 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q~----~~laral~-----~~~vlllD~t~g~d~~~~~~~~i~-----~adii 221 (275)
....+.+..+. ..|.+++++.|..++ ......+. .-.++++|++...+........|+ ..+-+
T Consensus 252 ~~l~~al~~~~---~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~gl 328 (767)
T PRK14723 252 ADLRFALAALG---DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGC 328 (767)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEE
Confidence 22234555432 458999998884321 11111111 357889998865332221112222 24679
Q ss_pred EEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH-HHHhc
Q 023913 222 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFTLS 268 (275)
Q Consensus 222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~-~~l~~ 268 (275)
|++|.|-....+..+..+ .. -+.||.+++ +|+.+ +++..
T Consensus 329 IlTKLDEt~~~G~iL~i~----~~--~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 329 IITKLDEATHLGPALDTV----IR--HRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred EEeccCCCCCccHHHHHH----HH--HCCCeEEEe--cCCCChhhccc
Confidence 999999887755554433 22 267888887 58888 55543
No 472
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.00 E-value=2e-09 Score=87.36 Aligned_cols=52 Identities=23% Similarity=0.101 Sum_probs=36.5
Q ss_pred ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+-+||.||+|+.... ...+.+.+..+.. +.+++++|++++.|+++++..+.
T Consensus 107 ~piivv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 107 VPMVLVGNKCDLAART-VSSRQGQDLAKSY--GIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred CCEEEEEECcccccce-ecHHHHHHHHHHh--CCeEEEecCCCCCCHHHHHHHHH
Confidence 4558899999997642 2233333333333 45899999999999999988654
No 473
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.00 E-value=1.8e-09 Score=102.51 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=46.9
Q ss_pred CCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCcccc-cccc-CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPILS-RNFN-ERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~-~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-+..+.+|..+..+-+.+..|..+..|..+- ......+-... ..+. +--.-|+|+|.++|||||||+.|++.
T Consensus 102 ~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~a 181 (424)
T PRK12297 102 EVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNA 181 (424)
T ss_pred cEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcC
Confidence 44667777777777788888888777776543 10111110101 1111 12447999999999999999999986
No 474
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.99 E-value=1.6e-09 Score=93.27 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=59.3
Q ss_pred cccccccChhHHHHH-HHHHHh--cCceEEEEeCCCCCCcccc----ccccccccC-EEEEecCCCCccchhhH----HH
Q 023913 171 ADLLLCESGGDNLAA-NFSREL--ADYIIYIIDVSGGDKIPRK----GGPGITQAD-LLVINKTDLASAIGADL----AV 238 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~-~laral--~~~~vlllD~t~g~d~~~~----~~~~i~~ad-iivlNK~Dl~~~~~~~~----~~ 238 (275)
....+.+++|+.... .+..++ ++..|+++|++.+...... .......+. ++|+||+|+........ +.
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 345667788865422 122233 2788999998876432221 111123344 44799999975321222 23
Q ss_pred HHHHHHhcC-CCCCEEEEEecCCcCHHHHhccccee
Q 023913 239 MERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHYI 273 (275)
Q Consensus 239 ~~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~~~ 273 (275)
+.+.++.+. +..+++++|++++.|+++......++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~~~~w~ 192 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSRSENMPWY 192 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccCCCCCCCC
Confidence 333344444 34679999999999998765544443
No 475
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.99 E-value=2.1e-09 Score=88.23 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=53.6
Q ss_pred cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---ccc---c---cccccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PRK---G---GPGITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~~---~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
+.+++|+.+-..+..... +..++++|.+..... ... . ...-..+-++|.||+|+........+...+.
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 132 (164)
T cd04175 53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 132 (164)
T ss_pred EEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHH
Confidence 344556533323322222 677888886543211 100 0 0111345688999999975422222333333
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.++. ..+++++||+++.|+++++.++.
T Consensus 133 ~~~~--~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 133 ARQW--GCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred HHHh--CCEEEEeeCCCCCCHHHHHHHHH
Confidence 3333 26899999999999999988654
No 476
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.99 E-value=1.6e-09 Score=88.32 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=58.0
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cccccc-----ccccCEEEEecCCCCccchhhHHHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPG-----ITQADLLVINKTDLASAIGADLAVMER 241 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~-----i~~adiivlNK~Dl~~~~~~~~~~~~~ 241 (275)
+..+.+++|+..-..+..... +..++++|.+...... ...... -..+-++|.||+|+........+++.+
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~ 131 (162)
T cd04106 52 RLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEA 131 (162)
T ss_pred EEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHH
Confidence 344555666544334433333 6778888865432111 111111 134568899999997653223344444
Q ss_pred HHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 242 DALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
..+.+ +.+++++|++++.|++++++.+.
T Consensus 132 ~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 132 LAKRL--QLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred HHHHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence 44443 35899999999999999987654
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.99 E-value=2.2e-09 Score=103.00 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=91.8
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCcc--chH
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIR 152 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~--~~~ 152 (275)
..+|.+++|+||||+||||++..|++.+... | +|.++..|.......+-++ .+-...+.+.. ...
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr----------~~AeilGVpv~~~~~~ 322 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLR----------IYGKILGVPVHAVKDA 322 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHH----------HHHHHhCCCeeccCCc
Confidence 3468999999999999999999999987654 4 5777776653221111011 01111122211 111
Q ss_pred HHHHHHHHHHHHhhcccccccccccChhHHHHHH---HHHHhc-Cc-----eEEEEeCCCCCCccccccccc--cccCEE
Q 023913 153 EDISINLGPLEELSNLFKADLLLCESGGDNLAAN---FSRELA-DY-----IIYIIDVSGGDKIPRKGGPGI--TQADLL 221 (275)
Q Consensus 153 ~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~---laral~-~~-----~vlllD~t~g~d~~~~~~~~i--~~adii 221 (275)
.+... .+. .....+.+++++.|..|+.. ....++ +. .+++||++.+.+........+ ...+-+
T Consensus 323 ~Dl~~---aL~---~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~~~g~ 396 (484)
T PRK06995 323 ADLRL---ALS---ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPGLAGC 396 (484)
T ss_pred hhHHH---HHH---hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCCCCEE
Confidence 11111 222 22245788888888655432 112222 22 688999876643322111111 124578
Q ss_pred EEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH-HHHhc
Q 023913 222 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFTLS 268 (275)
Q Consensus 222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~-~~l~~ 268 (275)
|+||.|-....+.-+.. +.+. +.||.+++ +|+.+ ++|..
T Consensus 397 IlTKlDet~~~G~~l~i----~~~~--~lPI~yvt--~GQ~VPeDL~~ 436 (484)
T PRK06995 397 ILTKLDEAASLGGALDV----VIRY--KLPLHYVS--NGQRVPEDLHL 436 (484)
T ss_pred EEeCCCCcccchHHHHH----HHHH--CCCeEEEe--cCCCChhhhcc
Confidence 99999987664333332 2232 57788887 58888 55543
No 478
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.98 E-value=2.7e-09 Score=86.67 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=38.9
Q ss_pred cccCEEEEecCCCCccchhhHH----HHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913 216 TQADLLVINKTDLASAIGADLA----VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 272 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~----~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~ 272 (275)
..+.++++||+|+.+. .... .+...++...+..+++++|++++.+++++++.+..
T Consensus 110 ~~~vi~v~nK~D~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 110 GIPFLVVLTKADKLKK--SELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred CCCEEEEEEchhcCCh--HHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHH
Confidence 4566889999999755 2222 22333332356678999999999999999987654
No 479
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.98 E-value=7.2e-10 Score=94.36 Aligned_cols=148 Identities=15% Similarity=0.046 Sum_probs=80.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH--Hhcc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL--MRNG 131 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~--~~ig 131 (275)
+.-.|.|+. ..+...+-+...+.|....++|.|||||||||++|+|-.--. |.|.+.+.+... +..+. ....
T Consensus 17 sgl~f~y~~---~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFh--Dt~l~~Sgdl~ 91 (291)
T KOG2355|consen 17 SGLQFKYKV---SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFH--DTSLESSGDLS 91 (291)
T ss_pred eccEEeccc---CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccc--cccccccCcee
Confidence 334566666 455555666666779999999999999999999999964444 778888776543 11111 1122
Q ss_pred ccCchhHHHHHhcCCCc--cch--H--------HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913 132 ALPEERIRAVETGGCPH--AAI--R--------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 132 ~v~q~~~~~~~~~~~~~--~~~--~--------~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl 197 (275)
|+-.+=..+....+... ..+ . .+..+..+.+.-+. -......-. |.||++|+.|+..|+ .-+|+
T Consensus 92 YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLD--Idl~WRmHkvSDGqrRRVQicMGLL~PfkVL 169 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILD--IDLRWRMHKVSDGQRRRVQICMGLLKPFKVL 169 (291)
T ss_pred EecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhhee--ccceEEEeeccccchhhhHHHHhcccceeEE
Confidence 22111000000111000 000 0 00111111111111 111222222 999999999999999 56899
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
+|| .|--+|+.+
T Consensus 170 LLDEVTVDLDVlA 182 (291)
T KOG2355|consen 170 LLDEVTVDLDVLA 182 (291)
T ss_pred EeeeeEeehHHHH
Confidence 999 555556544
No 480
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.98 E-value=1.1e-09 Score=89.43 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=57.1
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+..-..+.+..+ +..|+++|++....... ..... -..+-++|.||+|+........+.+.+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~ 131 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF 131 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence 3445666543333333333 67888999765321111 01001 1356788999999876422344445554
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.++. +.+++++|+++++|+++++..+
T Consensus 132 ~~~~--~~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 132 AEEH--GLPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 4443 4679999999999999998754
No 481
>PRK04213 GTP-binding protein; Provisional
Probab=98.98 E-value=5.6e-09 Score=88.86 Aligned_cols=55 Identities=11% Similarity=-0.079 Sum_probs=35.3
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCC----CCCEEEEEecCCcCHHHHhcccc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRD----GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~----~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
..+-+||+||+|+........+++.+.+....+ ..+++++||++| |++++++.+.
T Consensus 130 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~ 188 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIR 188 (201)
T ss_pred CCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence 456689999999976521223333333321001 136899999999 9999988654
No 482
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.98 E-value=1.2e-09 Score=89.93 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc--ccc----ccccc------cccCEEEEecCCCCccchhhHHHH
Q 023913 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI--PRK----GGPGI------TQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~--~~~----~~~~i------~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
+.+++|+..-..+....+ +..|+++|+...... ... ..... ..+-++|+||+|+..+.....+.+
T Consensus 53 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 132 (172)
T cd01862 53 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKA 132 (172)
T ss_pred EEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHH
Confidence 344555443333333333 677888887644211 000 00001 345578899999984321233444
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
....+. ....+++++|++++.|++++++..
T Consensus 133 ~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~i 162 (172)
T cd01862 133 QQWCQS-NGNIPYFETSAKEAINVEQAFETI 162 (172)
T ss_pred HHHHHH-cCCceEEEEECCCCCCHHHHHHHH
Confidence 444433 334689999999999999998754
No 483
>PRK09866 hypothetical protein; Provisional
Probab=98.97 E-value=4.1e-09 Score=103.05 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=62.4
Q ss_pred cccccccChhHH---HH-H--HHHHHhc--CceEEEEeCCCCCCcccc----cccccc--ccCEEEEecCCCCccchhhH
Q 023913 171 ADLLLCESGGDN---LA-A--NFSRELA--DYIIYIIDVSGGDKIPRK----GGPGIT--QADLLVINKTDLASAIGADL 236 (275)
Q Consensus 171 ~d~~~~eS~G~~---q~-~--~laral~--~~~vlllD~t~g~d~~~~----~~~~i~--~adiivlNK~Dl~~~~~~~~ 236 (275)
.+.++++|+|.. ++ + .+..++. +..++++|++.+...... ...... .+-++|+||+|+.+......
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 456677788862 12 1 2234444 788899998764322111 111122 26678999999975422234
Q ss_pred HHHHHHHHh-----cCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 237 AVMERDALR-----MRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 237 ~~~~~~i~~-----~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+.+.+.+.. ..+...||++||+.|.+++++++.+.
T Consensus 310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~ 349 (741)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELA 349 (741)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Confidence 555555432 33567899999999999999987643
No 484
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.97 E-value=3.7e-09 Score=90.24 Aligned_cols=95 Identities=19% Similarity=0.093 Sum_probs=55.4
Q ss_pred cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cc----------ccccccccCEEEEecCCCCccchhhHHHH
Q 023913 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RK----------GGPGITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~----------~~~~i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
+.+++|+.+--.+.+.+. +..|+++|.+...... .. ....-..+-+||.||+|+.+......+.+
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 133 (201)
T cd04107 54 LWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM 133 (201)
T ss_pred EEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH
Confidence 344555433333333333 5778888865432110 00 00012345688999999974322344555
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+..+.. ...+++++|+++++|+++++..+
T Consensus 134 ~~~~~~~-~~~~~~e~Sak~~~~v~e~f~~l 163 (201)
T cd04107 134 DQFCKEN-GFIGWFETSAKEGINIEEAMRFL 163 (201)
T ss_pred HHHHHHc-CCceEEEEeCCCCCCHHHHHHHH
Confidence 5555543 23679999999999999998764
No 485
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.97 E-value=2e-09 Score=89.51 Aligned_cols=98 Identities=20% Similarity=0.099 Sum_probs=57.2
Q ss_pred ccccccChhHHHHHHHH-HHhc--CceEEEEeCCCCCCcccc--c--cccccccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913 172 DLLLCESGGDNLAANFS-RELA--DYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVMERDAL 244 (275)
Q Consensus 172 d~~~~eS~G~~q~~~la-ral~--~~~vlllD~t~g~d~~~~--~--~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~ 244 (275)
...+.+++|+..-.... +.+. +..|+++|++.+...... . ......+-++|+||+|+.... . ....+.+.
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~--~-~~~~~~~~ 144 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD--P-ERVKQQIE 144 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC--H-HHHHHHHH
Confidence 34456677765432222 2222 788999998765432211 0 011234568899999986531 1 11222222
Q ss_pred hcC--CCCCEEEEEecCCcCHHHHhcccce
Q 023913 245 RMR--DGGPFIFAQVGWVIGIIFTLSITHY 272 (275)
Q Consensus 245 ~~~--~~~~ii~~S~~~~~g~~~l~~~~~~ 272 (275)
+.. +..+++++|+++|+|++++++.+..
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 145 DVLGLDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred HHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence 222 2346999999999999999886643
No 486
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.97 E-value=3.2e-09 Score=90.65 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=55.3
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDA 243 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i 243 (275)
.+.+++|+.+--.+..... +..++++|++....... .....+ ..+-+||.||+|+........+...+..
T Consensus 58 ~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~ 137 (199)
T cd04110 58 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA 137 (199)
T ss_pred EEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 3445666543323333332 56788899875432111 000111 2455889999999764222334444444
Q ss_pred HhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 244 LRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 244 ~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+.. +.+++++|++++.|++++++.+
T Consensus 138 ~~~--~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 138 GQM--GISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred HHc--CCEEEEEECCCCcCHHHHHHHH
Confidence 443 3779999999999999998764
No 487
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.97 E-value=2.6e-09 Score=89.07 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=55.6
Q ss_pred ccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccc---ccc-----cc-ccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPR---KGG-----PG-ITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~---~~~-----~~-i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+..--..... +. +..|+++|.+....... ... .. -..+-+|++||+|+... ...+++
T Consensus 60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i 137 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEI 137 (174)
T ss_pred EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHH
Confidence 3444556665432222222 22 67888899765432110 000 01 12455889999998654 233444
Q ss_pred HHHHHh--c-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 240 ERDALR--M-RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 240 ~~~i~~--~-~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.+.. . +...+++++||++++|+++++++++
T Consensus 138 ~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 138 SESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred HHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 444431 1 2245799999999999999998764
No 488
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.97 E-value=3e-09 Score=89.16 Aligned_cols=72 Identities=14% Similarity=0.025 Sum_probs=45.7
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccc--hhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~--~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|+......... .......+-++++||+|+.+.. ....+.+++.++......+++++|+++|+|++
T Consensus 102 ~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 102 KGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 467888887664332221 1112245668899999998651 12345555556555445689999999999874
No 489
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.96 E-value=2.4e-09 Score=87.24 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=58.3
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--c----cccc---cccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--R----KGGP---GITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~----~~~~---~i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+.+|+...-.+.+.+. +..++++|++...... . .... .-..+-++++||+|+... ...+++
T Consensus 44 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~~~ 121 (158)
T cd00878 44 SFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSVSEL 121 (158)
T ss_pred EEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc--cCHHHH
Confidence 344455556543333333333 6788899987652111 0 0001 113455788999999875 344555
Q ss_pred HHHHHhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRM---RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.+... ....+++++|++++.|++++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 122 IEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred HHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 5555432 234689999999999999998754
No 490
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.96 E-value=3.9e-09 Score=86.74 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=56.2
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccc---cc---ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGG---PG---ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~---~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+.+-..+..... +..|+++|.+....... ... .. -..+-++|.||+|+........+.....
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~ 133 (166)
T cd01869 54 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF 133 (166)
T ss_pred EEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence 3445666544333444443 67888889765321110 000 01 1245688999999865422233444444
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.. +.+++++|+++++|+++++..+
T Consensus 134 ~~~~--~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 134 ADEL--GIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred HHHc--CCeEEEEECCCCcCHHHHHHHH
Confidence 4333 5689999999999999998754
No 491
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.95 E-value=1.6e-09 Score=88.53 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=56.1
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc---cccc---c--c-ccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP---RKGG---P--G-ITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~---~~~~---~--~-i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+..--.+.+... +..|+++|.+...... .... . . -..+-+||+||+|+... ...+++
T Consensus 44 ~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~i 121 (158)
T cd04151 44 KFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--LSEAEI 121 (158)
T ss_pred EEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--CCHHHH
Confidence 344556677543223333322 6788889976532110 1010 0 0 13566899999999754 223344
Q ss_pred HHHHHhcC---CCCCEEEEEecCCcCHHHHhcccc
Q 023913 240 ERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 240 ~~~i~~~~---~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.+.... ...+++++|++++.|++++++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 122 SEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred HHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 33332211 124699999999999999998653
No 492
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.94 E-value=5.9e-09 Score=84.38 Aligned_cols=76 Identities=18% Similarity=0.044 Sum_probs=48.4
Q ss_pred CceEEEEeCCCCCCccc--cc----ccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR--KG----GPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~----~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|++....... .. ... -..+-++|+||+|+........+.+.+..+... .+++++|++++.|+
T Consensus 72 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i 149 (160)
T cd00876 72 DGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG--CPFIETSAKDNINI 149 (160)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC--CcEEEeccCCCCCH
Confidence 67788888765421110 00 000 134558899999998642233445555555443 78999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
++++..+
T Consensus 150 ~~l~~~l 156 (160)
T cd00876 150 DEVFKLL 156 (160)
T ss_pred HHHHHHH
Confidence 9998754
No 493
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.94 E-value=2.5e-09 Score=89.07 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=58.1
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc-------cccCEEEEecCCCCccchhhHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI-------TQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i-------~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..+.+++|+.+.-.+.+... +..|+++|++....... .....+ ..+-++|.||+|+.+......+.+.
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~ 144 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK 144 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence 34555677665444444444 57788899765321111 000001 2345788999999754222334444
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+..++. +.+++++|++++.|++++++.+.
T Consensus 145 ~~~~~~--~~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 145 ALADKY--GIPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred HHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 444444 36899999999999999988653
No 494
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.94 E-value=2.4e-09 Score=84.25 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=58.0
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---------cccccccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---------~~~~~i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+.+|+........... +..++++|.+....... ........+-++++||+|+..........
T Consensus 46 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~- 124 (157)
T cd00882 46 KLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE- 124 (157)
T ss_pred EEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-
Confidence 444555666543333322222 67788888776532111 11122345678999999998663222111
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
...........+++++|++.+.|++++++++
T Consensus 125 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 125 LAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 1222334457899999999999999998764
No 495
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.94 E-value=3.2e-09 Score=87.32 Aligned_cols=77 Identities=14% Similarity=0.010 Sum_probs=46.6
Q ss_pred CceEEEEeCCCCCCc---ccccc--cc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKI---PRKGG--PG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~---~~~~~--~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|++..... ..... .. -..+-++|.||+|+..... ....+...+.+..+ .+++++|++++.|++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~-i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 158 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE-VSQQRAEEFSDAQD-MYYLETSAKESDNVE 158 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-cCHHHHHHHHHHcC-CeEEEeeCCCCCCHH
Confidence 677888887643211 11000 11 1234588999999875421 11223334444444 779999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++...
T Consensus 159 ~l~~~i~ 165 (169)
T cd04114 159 KLFLDLA 165 (169)
T ss_pred HHHHHHH
Confidence 9998643
No 496
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.94 E-value=5.2e-09 Score=84.87 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=55.7
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cc---ccc---ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KG---GPG---ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~---~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+..--.+..... +..++++|.+....... .. ..+ ...+-++|+||+|+........+.+.+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~ 131 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY 131 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 3444566433333333332 67788889765432110 00 001 1356688899999975422233444444
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.. +.+++++|++++.|++++++++
T Consensus 132 ~~~~--~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 132 AKSV--GAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred HHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 4443 4678999999999999999875
No 497
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.94 E-value=2.5e-09 Score=88.86 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=57.2
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc---ccccc-----cc-cccCEEEEecCCCCccchhhHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP---RKGGP-----GI-TQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~---~~~~~-----~i-~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..+.+++|+.+.-.+.+... +..|+++|.+...... ..... .+ ..+-+||.||+|+... ...++++
T Consensus 55 ~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~ 132 (168)
T cd04149 55 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQ 132 (168)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHH
Confidence 44455777654433433332 6789999977532111 10101 11 2456788999998654 2334455
Q ss_pred HHHH--hcCC-CCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDAL--RMRD-GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~--~~~~-~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+.+. ++.+ ..+++++||++|+|++++++++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 133 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred HHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 4432 2222 34689999999999999998753
No 498
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.94 E-value=3e-09 Score=98.92 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=44.5
Q ss_pred CceEEEEeCCCCCCccc-----cccccc---cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-----~~~~~i---~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.+. ..+..+ .. ...+++++|++++.|++
T Consensus 270 Dlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~~~----~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 270 DLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIERL----EE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHHHH----Hh--CCCCEEEEEccCCCCHH
Confidence 67888999765432111 111112 3455899999999764 222211 11 22468999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++.+.
T Consensus 342 eL~~~I~ 348 (351)
T TIGR03156 342 LLLEAIA 348 (351)
T ss_pred HHHHHHH
Confidence 9987654
No 499
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=5.5e-10 Score=115.57 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=101.4
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHHHhccccCchhHHH----
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA---- 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~---- 140 (275)
+.+.+.+...++|+.+.++||+||||||||+.|+|-+.. .|+|.++|.+..+..+ .+.++|++|...-.
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 455566667788999999999999999999999997663 2689999988876544 46689999886421
Q ss_pred ----HHh-cCCCcc-------chHHHH-HHHHHHHHHhhccccccccccc------ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 141 ----VET-GGCPHA-------AIREDI-SINLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 141 ----~~~-~~~~~~-------~~~~~~-~~~~~~L~~l~~~~~~d~~~~e------S~G~~q~~~laral~-~~~vlllD 200 (275)
+.+ ..|... .-++.. +.....++.+++....|.+++. |||||+|+.++..++ .+.++..|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 111 222221 111111 1344577888888877877766 999999999999998 89999999
Q ss_pred -CCCCCCcc
Q 023913 201 -VSGGDKIP 208 (275)
Q Consensus 201 -~t~g~d~~ 208 (275)
+++|+|..
T Consensus 286 e~t~GLDSs 294 (1391)
T KOG0065|consen 286 EITRGLDSS 294 (1391)
T ss_pred cccccccHH
Confidence 89999854
No 500
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.93 E-value=1.3e-09 Score=88.94 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=56.2
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cccccc----c--cccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPG----I--TQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~----i--~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+..--.+.+.++ +..++++|.+...... .....+ . ..+-++++||+|+........+.....
T Consensus 52 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd01861 52 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK 131 (161)
T ss_pred EEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence 3455566544333333333 6778888875432111 111111 1 256688999999964422233444444
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.. +.+++++|++++.|+++++....
T Consensus 132 ~~~~--~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 132 AKEL--NAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred HHHh--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 4443 47899999999999999988654
Done!