Query 023913
Match_columns 275
No_of_seqs 406 out of 3539
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 1.1E-26 3.7E-31 207.5 9.2 152 55-209 11-178 (275)
2 3tui_C Methionine import ATP-b 99.9 2.5E-26 8.5E-31 212.1 9.7 155 55-209 28-198 (366)
3 3tif_A Uncharacterized ABC tra 99.9 4.8E-26 1.6E-30 198.8 10.7 140 70-209 20-180 (235)
4 2olj_A Amino acid ABC transpor 99.9 1.3E-25 4.5E-30 199.2 11.1 145 65-209 34-194 (263)
5 4g1u_C Hemin import ATP-bindin 99.9 1.3E-25 4.6E-30 199.5 11.0 142 67-209 23-182 (266)
6 1ji0_A ABC transporter; ATP bi 99.9 1.2E-25 3.9E-30 197.0 10.2 143 67-209 18-174 (240)
7 2ihy_A ABC transporter, ATP-bi 99.9 1.3E-25 4.3E-30 201.0 10.3 145 65-209 31-196 (279)
8 1g6h_A High-affinity branched- 99.9 2.1E-25 7.2E-30 197.2 11.4 143 67-209 19-188 (257)
9 2pcj_A ABC transporter, lipopr 99.9 3.3E-26 1.1E-30 198.5 5.8 143 67-209 16-175 (224)
10 3nh6_A ATP-binding cassette SU 99.9 1.9E-25 6.3E-30 202.2 10.6 150 55-209 57-225 (306)
11 3fvq_A Fe(3+) IONS import ATP- 99.9 1.4E-25 4.9E-30 206.7 9.0 145 65-209 14-173 (359)
12 1z47_A CYSA, putative ABC-tran 99.9 3.9E-25 1.3E-29 203.7 11.3 150 55-209 18-180 (355)
13 1vpl_A ABC transporter, ATP-bi 99.9 6.7E-26 2.3E-30 200.4 5.9 150 55-209 19-181 (256)
14 1b0u_A Histidine permease; ABC 99.9 4.3E-25 1.5E-29 195.8 9.6 143 67-209 18-188 (262)
15 3rlf_A Maltose/maltodextrin im 99.9 2.6E-25 9.1E-30 206.3 8.2 143 65-209 13-168 (381)
16 2ixe_A Antigen peptide transpo 99.9 1.6E-24 5.3E-29 193.1 12.1 154 55-209 20-191 (271)
17 2yyz_A Sugar ABC transporter, 99.9 1.5E-24 5.1E-29 200.2 10.9 141 67-209 15-168 (359)
18 1mv5_A LMRA, multidrug resista 99.9 1.7E-24 5.7E-29 189.9 10.7 148 56-210 6-175 (243)
19 2ff7_A Alpha-hemolysin translo 99.9 2.8E-24 9.7E-29 189.0 11.3 148 55-209 11-180 (247)
20 2yz2_A Putative ABC transporte 99.9 1.1E-24 3.8E-29 193.5 8.7 138 69-209 21-173 (266)
21 1sgw_A Putative ABC transporte 99.9 2.7E-25 9.1E-30 191.6 4.2 143 55-209 14-168 (214)
22 1v43_A Sugar-binding transport 99.9 2.4E-24 8.4E-29 199.6 10.8 141 67-209 23-176 (372)
23 3d31_A Sulfate/molybdate ABC t 99.9 9E-25 3.1E-29 200.9 7.4 138 67-209 13-162 (348)
24 1oxx_K GLCV, glucose, ABC tran 99.9 1.1E-24 3.7E-29 200.9 7.8 143 67-209 15-175 (353)
25 2it1_A 362AA long hypothetical 99.9 5.7E-25 2E-29 203.2 5.7 142 66-209 14-168 (362)
26 2zu0_C Probable ATP-dependent 99.9 4.5E-24 1.5E-28 189.7 8.9 145 65-209 30-199 (267)
27 2qi9_C Vitamin B12 import ATP- 99.9 7.5E-24 2.6E-28 186.5 10.2 137 69-209 14-168 (249)
28 2onk_A Molybdate/tungstate ABC 99.9 8.8E-24 3E-28 185.1 9.9 135 71-209 15-161 (240)
29 1g29_1 MALK, maltose transport 99.9 2.8E-24 9.6E-29 199.3 7.2 141 67-209 15-174 (372)
30 2nq2_C Hypothetical ABC transp 99.9 1.3E-23 4.3E-28 185.4 8.5 130 67-209 17-163 (253)
31 2d2e_A SUFC protein; ABC-ATPas 99.9 1.5E-23 5.2E-28 184.5 8.6 143 67-209 15-178 (250)
32 2ghi_A Transport protein; mult 99.9 3.5E-23 1.2E-27 183.3 10.1 149 55-209 21-190 (260)
33 3gd7_A Fusion complex of cysti 99.9 3.4E-23 1.1E-27 193.1 8.4 145 55-208 23-189 (390)
34 4f4c_A Multidrug resistance pr 99.9 1.5E-22 5E-27 213.8 12.8 152 55-208 1080-1251(1321)
35 2cbz_A Multidrug resistance-as 99.9 1.2E-22 4.2E-27 177.4 10.0 139 56-209 8-162 (237)
36 3qf4_A ABC transporter, ATP-bi 99.9 1.7E-22 5.8E-27 197.8 11.8 151 55-208 345-513 (587)
37 2pjz_A Hypothetical protein ST 99.9 1.4E-23 4.7E-28 186.2 3.4 134 68-209 18-163 (263)
38 3qf4_B Uncharacterized ABC tra 99.9 2E-22 6.8E-27 197.6 11.3 150 55-209 358-526 (598)
39 4a82_A Cystic fibrosis transme 99.9 2.1E-22 7.2E-27 196.7 11.1 150 55-209 343-512 (578)
40 3b60_A Lipid A export ATP-bind 99.9 2.7E-22 9.3E-27 196.1 11.4 151 55-209 345-515 (582)
41 2pze_A Cystic fibrosis transme 99.9 3.5E-22 1.2E-26 173.7 10.8 136 56-209 11-165 (229)
42 3b5x_A Lipid A export ATP-bind 99.9 2.9E-22 9.9E-27 195.9 11.4 151 55-209 345-515 (582)
43 4f4c_A Multidrug resistance pr 99.9 1.1E-21 3.8E-26 207.1 15.1 153 55-209 419-589 (1321)
44 2yl4_A ATP-binding cassette SU 99.9 6.7E-22 2.3E-26 193.8 9.8 150 55-209 345-518 (595)
45 2qm8_A GTPase/ATPase; G protei 99.8 2.7E-21 9.3E-26 177.2 5.3 201 69-271 43-256 (337)
46 3g5u_A MCG1178, multidrug resi 99.8 2.1E-20 7.3E-25 196.9 12.5 150 55-208 391-560 (1284)
47 2bbs_A Cystic fibrosis transme 99.8 1.6E-20 5.6E-25 168.6 8.5 127 68-209 51-194 (290)
48 3g5u_A MCG1178, multidrug resi 99.8 2.4E-20 8.1E-25 196.5 10.4 153 55-209 1034-1206(1284)
49 1yqt_A RNAse L inhibitor; ATP- 99.8 1.4E-19 4.8E-24 175.3 6.4 134 70-208 37-192 (538)
50 3bk7_A ABC transporter ATP-bin 99.8 1.1E-19 3.6E-24 178.3 4.3 119 78-209 379-506 (607)
51 3j16_B RLI1P; ribosome recycli 99.8 6.8E-19 2.3E-23 172.5 8.1 140 64-209 86-256 (608)
52 3bk7_A ABC transporter ATP-bin 99.8 3.4E-19 1.2E-23 174.7 5.9 141 64-209 100-263 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 1.4E-19 4.9E-24 175.3 2.6 113 78-209 309-436 (538)
54 3ozx_A RNAse L inhibitor; ATP 99.8 1.4E-18 4.7E-23 168.3 9.3 119 77-209 290-420 (538)
55 3ozx_A RNAse L inhibitor; ATP 99.7 1.5E-18 5.3E-23 167.9 7.0 128 74-208 18-172 (538)
56 3j16_B RLI1P; ribosome recycli 99.7 8.9E-18 3.1E-22 164.6 10.8 113 81-209 378-502 (608)
57 2www_A Methylmalonic aciduria 99.7 1E-17 3.4E-22 154.1 7.4 182 80-271 73-274 (349)
58 2iw3_A Elongation factor 3A; a 99.7 3.3E-17 1.1E-21 167.0 9.1 58 55-115 675-734 (986)
59 3sop_A Neuronal-specific septi 99.7 3.4E-19 1.2E-23 158.5 -6.0 149 83-244 4-166 (270)
60 3b9q_A Chloroplast SRP recepto 99.7 4.2E-18 1.4E-22 153.8 1.0 174 78-268 97-290 (302)
61 3p32_A Probable GTPase RV1496/ 99.7 6.8E-16 2.3E-20 142.0 13.9 182 79-270 77-278 (355)
62 2og2_A Putative signal recogni 99.7 1.4E-17 4.8E-22 153.6 1.2 175 78-269 154-348 (359)
63 2p67_A LAO/AO transport system 99.6 8.3E-17 2.8E-21 147.5 5.9 188 75-270 50-255 (341)
64 3b85_A Phosphate starvation-in 99.6 2.2E-19 7.6E-24 153.8 -11.0 109 79-204 20-134 (208)
65 3ux8_A Excinuclease ABC, A sub 99.6 2.1E-16 7E-21 156.8 8.5 141 69-209 32-239 (670)
66 2wsm_A Hydrogenase expression/ 99.6 2.9E-16 9.8E-21 133.7 5.8 179 80-271 29-209 (221)
67 1nij_A Hypothetical protein YJ 99.6 1.7E-16 5.8E-21 144.0 3.9 180 80-270 3-199 (318)
68 2iw3_A Elongation factor 3A; a 99.6 8E-16 2.7E-20 156.9 7.3 126 65-209 445-583 (986)
69 3ux8_A Excinuclease ABC, A sub 99.6 4.4E-15 1.5E-19 147.2 8.9 50 160-209 525-581 (670)
70 1rj9_A FTSY, signal recognitio 99.5 1.8E-14 6.1E-19 130.0 10.9 167 80-268 101-291 (304)
71 2npi_A Protein CLP1; CLP1-PCF1 99.5 6.2E-17 2.1E-21 153.9 -5.9 123 74-208 131-276 (460)
72 2hf9_A Probable hydrogenase ni 99.5 7.1E-15 2.4E-19 125.5 4.8 180 80-271 37-219 (226)
73 3e70_C DPA, signal recognition 99.5 5.7E-14 2E-18 128.0 10.5 167 79-268 127-312 (328)
74 4gp7_A Metallophosphoesterase; 99.5 2.2E-15 7.5E-20 124.5 0.7 114 75-209 3-118 (171)
75 2r6f_A Excinuclease ABC subuni 99.5 2.2E-14 7.6E-19 145.5 7.7 51 159-209 826-883 (972)
76 3aez_A Pantothenate kinase; tr 99.5 5.9E-15 2E-19 133.7 2.6 135 78-227 87-227 (312)
77 2yhs_A FTSY, cell division pro 99.5 8.9E-14 3E-18 132.5 9.5 169 77-268 289-482 (503)
78 1z6g_A Guanylate kinase; struc 99.5 3.1E-16 1.1E-20 134.8 -7.6 129 71-206 13-159 (218)
79 2ygr_A Uvrabc system protein A 99.5 5.5E-14 1.9E-18 143.1 7.5 51 159-209 844-901 (993)
80 2qnr_A Septin-2, protein NEDD5 99.5 3.2E-16 1.1E-20 141.3 -8.2 170 83-269 20-207 (301)
81 2vf7_A UVRA2, excinuclease ABC 99.4 3.2E-14 1.1E-18 143.6 4.8 51 159-209 711-768 (842)
82 1ye8_A Protein THEP1, hypothet 99.4 1.6E-14 5.4E-19 120.5 1.5 105 83-207 2-116 (178)
83 1tq4_A IIGP1, interferon-induc 99.4 5.8E-15 2E-19 138.4 -2.2 99 83-192 71-172 (413)
84 4aby_A DNA repair protein RECN 99.4 1.3E-13 4.6E-18 128.5 5.3 32 178-209 297-332 (415)
85 1udx_A The GTP-binding protein 99.4 6.9E-14 2.4E-18 131.3 3.1 203 32-271 101-320 (416)
86 2v9p_A Replication protein E1; 99.4 3.7E-14 1.3E-18 127.9 -0.1 111 70-209 115-228 (305)
87 3iev_A GTP-binding protein ERA 99.4 5.1E-13 1.7E-17 120.5 6.5 76 193-270 94-176 (308)
88 2qag_C Septin-7; cell cycle, c 99.3 9E-14 3.1E-18 130.6 -2.5 164 84-268 34-219 (418)
89 2pt7_A CAG-ALFA; ATPase, prote 99.3 3.9E-13 1.3E-17 122.6 1.6 87 73-204 163-251 (330)
90 3pih_A Uvrabc system protein A 99.3 1.1E-11 3.6E-16 126.2 11.4 51 159-209 786-843 (916)
91 1yrb_A ATP(GTP)binding protein 99.3 1.8E-11 6.2E-16 106.6 9.6 183 81-271 14-252 (262)
92 1wf3_A GTP-binding protein; GT 99.2 1.8E-12 6.2E-17 116.7 3.2 74 193-270 88-167 (301)
93 1ega_A Protein (GTP-binding pr 99.2 1.7E-12 5.7E-17 116.8 2.1 148 79-270 6-169 (301)
94 1e69_A Chromosome segregation 99.2 7.3E-12 2.5E-16 113.5 6.3 38 172-209 214-258 (322)
95 2f1r_A Molybdopterin-guanine d 99.2 1.9E-13 6.5E-18 113.4 -4.7 107 82-196 3-124 (171)
96 1f6b_A SAR1; gtpases, N-termin 99.2 4.9E-12 1.7E-16 106.1 3.8 77 193-271 94-194 (198)
97 1mky_A Probable GTP-binding pr 99.2 1.1E-11 3.9E-16 116.8 6.7 79 192-270 264-349 (439)
98 4dhe_A Probable GTP-binding pr 99.2 1.5E-11 5.3E-16 104.1 5.4 79 193-271 117-206 (223)
99 2dy1_A Elongation factor G; tr 99.2 1.7E-11 5.8E-16 121.5 6.4 124 78-229 6-139 (665)
100 2jeo_A Uridine-cytidine kinase 99.2 2.5E-12 8.6E-17 111.9 -0.3 119 67-201 11-141 (245)
101 1m2o_B GTP-binding protein SAR 99.2 3.5E-11 1.2E-15 100.1 6.6 77 193-271 92-187 (190)
102 1pui_A ENGB, probable GTP-bind 99.2 3.1E-11 1.1E-15 101.3 6.0 79 193-271 110-194 (210)
103 3pqc_A Probable GTP-binding pr 99.1 2.3E-11 7.8E-16 100.3 4.9 77 193-271 106-189 (195)
104 4dcu_A GTP-binding protein ENG 99.1 4.4E-11 1.5E-15 113.3 6.7 79 192-270 278-363 (456)
105 2e87_A Hypothetical protein PH 99.1 4.5E-11 1.5E-15 109.7 6.2 155 79-270 165-330 (357)
106 1tf7_A KAIC; homohexamer, hexa 99.1 4.9E-11 1.7E-15 114.9 6.6 107 77-208 277-386 (525)
107 1svi_A GTP-binding protein YSX 99.1 8.9E-11 3E-15 97.1 7.1 77 193-271 107-190 (195)
108 1ky3_A GTP-binding protein YPT 99.1 3E-11 1E-15 98.3 4.1 97 173-270 60-172 (182)
109 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 6.6E-11 2.3E-15 109.2 6.4 37 173-209 275-320 (365)
110 1u8z_A RAS-related protein RAL 99.1 9.4E-11 3.2E-15 93.8 6.5 97 172-270 53-161 (168)
111 2dpy_A FLII, flagellum-specifi 99.1 1.8E-11 6.2E-16 115.6 2.6 68 68-136 145-221 (438)
112 3q72_A GTP-binding protein RAD 99.1 1.2E-10 4.2E-15 93.5 6.5 76 193-270 74-158 (166)
113 2hjg_A GTP-binding protein ENG 99.1 7E-11 2.4E-15 111.3 5.8 79 192-270 258-343 (436)
114 2f7s_A C25KG, RAS-related prot 99.1 2.5E-10 8.6E-15 96.3 8.6 98 171-270 84-193 (217)
115 2rcn_A Probable GTPase ENGC; Y 99.1 1E-10 3.6E-15 107.5 6.6 109 78-192 212-329 (358)
116 2lkc_A Translation initiation 99.1 3.4E-11 1.2E-15 97.9 2.8 75 193-270 80-165 (178)
117 2nzj_A GTP-binding protein REM 99.1 7E-11 2.4E-15 95.6 4.7 95 174-270 55-163 (175)
118 2bov_A RAla, RAS-related prote 99.1 1.8E-10 6.2E-15 95.9 7.2 76 193-270 87-171 (206)
119 1xzp_A Probable tRNA modificat 99.1 4.3E-11 1.5E-15 114.3 3.4 74 192-270 324-399 (482)
120 1c1y_A RAS-related protein RAP 99.1 1.1E-10 3.6E-15 93.7 5.2 77 193-270 76-161 (167)
121 2erx_A GTP-binding protein DI- 99.1 1.3E-10 4.5E-15 93.4 5.7 77 193-271 76-162 (172)
122 3gee_A MNME, tRNA modification 99.1 7.6E-11 2.6E-15 112.4 4.7 145 80-271 232-393 (476)
123 2a9k_A RAS-related protein RAL 99.1 1.5E-10 5E-15 94.6 5.8 76 193-270 91-175 (187)
124 1kao_A RAP2A; GTP-binding prot 99.1 1.4E-10 4.8E-15 92.7 5.6 76 193-270 76-160 (167)
125 3kl4_A SRP54, signal recogniti 99.1 1.8E-10 6E-15 108.5 6.9 168 80-267 96-281 (433)
126 3dz8_A RAS-related protein RAB 99.0 8.5E-11 2.9E-15 97.4 4.1 147 81-270 23-180 (191)
127 2fg5_A RAB-22B, RAS-related pr 99.0 9.1E-11 3.1E-15 97.4 4.2 77 193-271 97-181 (192)
128 2qu8_A Putative nucleolar GTP- 99.0 2E-10 6.9E-15 98.1 6.4 79 193-271 110-200 (228)
129 1z08_A RAS-related protein RAB 99.0 2.5E-11 8.7E-16 97.8 0.5 76 193-270 80-163 (170)
130 1zd9_A ADP-ribosylation factor 99.0 1.3E-10 4.3E-15 96.2 4.6 77 193-271 92-180 (188)
131 2i3b_A HCR-ntpase, human cance 99.0 7.8E-12 2.7E-16 105.2 -2.8 52 81-136 1-53 (189)
132 2eyu_A Twitching motility prot 99.0 1.3E-10 4.6E-15 102.4 4.9 41 78-118 22-64 (261)
133 3tkl_A RAS-related protein RAB 99.0 1.5E-10 5.2E-15 95.6 4.9 76 193-270 90-173 (196)
134 3kkq_A RAS-related protein M-R 99.0 3E-10 1E-14 92.9 6.5 76 193-270 91-176 (183)
135 3t1o_A Gliding protein MGLA; G 99.0 1.6E-10 5.3E-15 95.3 4.8 52 216-270 135-186 (198)
136 2ehv_A Hypothetical protein PH 99.0 1.2E-10 4.2E-15 100.2 4.3 60 77-137 26-88 (251)
137 4bas_A ADP-ribosylation factor 99.0 1.1E-10 3.7E-15 96.8 3.7 77 193-271 88-184 (199)
138 3clv_A RAB5 protein, putative; 99.0 2.2E-10 7.5E-15 94.5 5.5 97 171-270 93-198 (208)
139 1z0f_A RAB14, member RAS oncog 99.0 2.3E-10 7.9E-15 92.7 5.4 96 173-270 66-172 (179)
140 2gj8_A MNME, tRNA modification 99.0 2.4E-11 8.2E-16 99.6 -0.5 70 193-271 85-161 (172)
141 1z2a_A RAS-related protein RAB 99.0 2.9E-11 1E-15 97.1 -0.1 76 193-270 79-161 (168)
142 1zj6_A ADP-ribosylation factor 99.0 6.7E-10 2.3E-14 91.5 8.1 146 77-270 12-172 (187)
143 3geh_A MNME, tRNA modification 99.0 1.6E-10 5.5E-15 109.8 4.7 72 193-270 305-378 (462)
144 1ksh_A ARF-like protein 2; sma 99.0 3.1E-10 1.1E-14 93.2 5.8 144 79-270 16-174 (186)
145 1z0j_A RAB-22, RAS-related pro 99.0 1.9E-10 6.5E-15 92.5 4.3 76 193-270 80-163 (170)
146 1fzq_A ADP-ribosylation factor 99.0 2.8E-10 9.4E-15 93.8 5.2 77 193-271 85-173 (181)
147 2g6b_A RAS-related protein RAB 99.0 3E-10 1E-14 92.4 5.3 95 174-270 63-168 (180)
148 1htw_A HI0065; nucleotide-bind 99.0 3E-11 1E-15 98.8 -0.7 51 67-118 19-70 (158)
149 2wji_A Ferrous iron transport 99.0 5E-11 1.7E-15 96.7 0.5 74 193-271 83-160 (165)
150 1r8s_A ADP-ribosylation factor 99.0 6E-10 2E-14 89.2 6.9 97 173-271 46-157 (164)
151 1wms_A RAB-9, RAB9, RAS-relate 99.0 9.6E-11 3.3E-15 95.1 2.2 96 173-270 58-168 (177)
152 2il1_A RAB12; G-protein, GDP, 99.0 2.1E-10 7.3E-15 95.2 4.3 77 193-270 100-184 (192)
153 1moz_A ARL1, ADP-ribosylation 99.0 1.9E-10 6.6E-15 93.9 4.0 76 193-270 87-174 (183)
154 3bc1_A RAS-related protein RAB 99.0 2E-10 6.7E-15 94.3 3.8 97 172-270 71-179 (195)
155 2fn4_A P23, RAS-related protei 99.0 1.8E-10 6.2E-15 93.5 3.5 76 193-270 82-166 (181)
156 2oil_A CATX-8, RAS-related pro 99.0 2.6E-10 8.9E-15 94.3 4.5 76 193-270 99-182 (193)
157 3q85_A GTP-binding protein REM 99.0 1.9E-10 6.4E-15 92.7 3.5 76 193-270 77-161 (169)
158 1upt_A ARL1, ADP-ribosylation 99.0 5.4E-10 1.8E-14 90.0 6.1 76 193-270 76-163 (171)
159 1r2q_A RAS-related protein RAB 99.0 2E-10 6.8E-15 92.2 3.5 77 193-271 80-164 (170)
160 3asz_A Uridine kinase; cytidin 99.0 3.7E-12 1.3E-16 107.7 -7.2 38 78-117 3-40 (211)
161 2gf0_A GTP-binding protein DI- 99.0 1.1E-09 3.8E-14 90.6 8.0 75 193-270 81-165 (199)
162 3tw8_B RAS-related protein RAB 99.0 1.1E-10 3.7E-15 94.9 1.8 77 193-271 83-166 (181)
163 4dsu_A GTPase KRAS, isoform 2B 99.0 7.2E-10 2.5E-14 90.7 6.7 75 193-270 77-160 (189)
164 1cr0_A DNA primase/helicase; R 99.0 2.7E-10 9.4E-15 101.4 4.5 60 69-131 23-84 (296)
165 2o52_A RAS-related protein RAB 99.0 8.1E-11 2.8E-15 98.5 1.0 97 172-270 75-182 (200)
166 3sjy_A Translation initiation 99.0 7.2E-10 2.4E-14 103.4 7.4 101 171-271 75-187 (403)
167 1wb1_A Translation elongation 99.0 1.2E-09 4.3E-14 104.2 9.2 98 171-270 73-183 (482)
168 2efe_B Small GTP-binding prote 99.0 1.2E-10 4.1E-15 94.9 1.9 76 193-270 86-169 (181)
169 2ce2_X GTPase HRAS; signaling 99.0 6.5E-10 2.2E-14 88.5 6.1 76 193-271 76-160 (166)
170 1z06_A RAS-related protein RAB 99.0 3.4E-10 1.2E-14 93.4 4.5 98 172-271 70-183 (189)
171 2bme_A RAB4A, RAS-related prot 99.0 1.3E-10 4.5E-15 95.2 1.8 95 174-270 62-167 (186)
172 2qag_B Septin-6, protein NEDD5 99.0 7.9E-11 2.7E-15 110.5 0.5 40 65-105 25-66 (427)
173 2y8e_A RAB-protein 6, GH09086P 99.0 2.5E-10 8.6E-15 92.5 3.5 77 193-271 88-172 (179)
174 3k53_A Ferrous iron transport 99.0 1.9E-11 6.3E-16 107.9 -3.6 73 193-270 83-160 (271)
175 2hup_A RAS-related protein RAB 99.0 4.4E-10 1.5E-14 94.2 5.0 98 172-270 79-187 (201)
176 2dyk_A GTP-binding protein; GT 99.0 2.8E-10 9.4E-15 90.8 3.5 72 193-270 81-156 (161)
177 2b6h_A ADP-ribosylation factor 99.0 4.4E-10 1.5E-14 93.5 4.7 147 77-271 25-186 (192)
178 1g16_A RAS-related protein SEC 99.0 1.5E-10 5E-15 93.1 1.7 75 193-270 77-159 (170)
179 1zp6_A Hypothetical protein AT 99.0 5.8E-11 2E-15 98.5 -0.7 56 78-137 6-62 (191)
180 2p5s_A RAS and EF-hand domain 98.9 2.9E-10 9.8E-15 94.9 3.5 96 173-270 79-191 (199)
181 2fh5_B SR-beta, signal recogni 98.9 2.4E-10 8.1E-15 96.3 2.9 24 81-104 7-30 (214)
182 2a5j_A RAS-related protein RAB 98.9 2.2E-10 7.5E-15 94.9 2.6 76 193-270 95-178 (191)
183 3con_A GTPase NRAS; structural 98.9 1.3E-09 4.3E-14 89.8 7.2 96 172-270 70-177 (190)
184 2h57_A ADP-ribosylation factor 98.9 3.2E-10 1.1E-14 93.7 3.5 77 193-271 92-182 (190)
185 1oix_A RAS-related protein RAB 98.9 1.1E-10 3.6E-15 97.3 0.5 52 218-271 136-187 (191)
186 2ew1_A RAS-related protein RAB 98.9 2.2E-10 7.4E-15 96.5 2.3 76 193-270 100-183 (201)
187 1zbd_A Rabphilin-3A; G protein 98.9 1.2E-10 4E-15 97.3 0.6 76 193-270 82-165 (203)
188 1lnz_A SPO0B-associated GTP-bi 98.9 8.8E-10 3E-14 100.8 6.5 195 31-271 101-325 (342)
189 2gf9_A RAS-related protein RAB 98.9 4.6E-11 1.6E-15 98.7 -2.0 76 193-270 96-179 (189)
190 2atv_A RERG, RAS-like estrogen 98.9 6.7E-10 2.3E-14 92.3 5.1 76 193-270 100-185 (196)
191 1zu4_A FTSY; GTPase, signal re 98.9 1.8E-09 6E-14 98.0 8.1 167 78-267 102-297 (320)
192 1vg8_A RAS-related protein RAB 98.9 3.1E-10 1.1E-14 94.6 2.9 76 193-270 82-169 (207)
193 3dm5_A SRP54, signal recogniti 98.9 2.6E-09 9E-14 100.7 9.5 169 80-268 99-283 (443)
194 3iby_A Ferrous iron transport 98.9 5.8E-11 2E-15 104.3 -1.9 73 193-270 85-161 (256)
195 1znw_A Guanylate kinase, GMP k 98.9 3.5E-10 1.2E-14 95.7 3.0 62 76-141 15-77 (207)
196 3t5g_A GTP-binding protein RHE 98.9 2.3E-10 8E-15 93.4 1.9 76 193-270 79-163 (181)
197 2h17_A ADP-ribosylation factor 98.9 8.5E-10 2.9E-14 90.5 5.2 76 193-270 90-177 (181)
198 2hxs_A RAB-26, RAS-related pro 98.9 3.9E-10 1.3E-14 91.6 3.0 76 193-270 81-167 (178)
199 2yc2_C IFT27, small RAB-relate 98.9 1.7E-10 5.8E-15 96.1 0.7 97 172-270 74-186 (208)
200 2bcg_Y Protein YP2, GTP-bindin 98.9 1.2E-10 4E-15 97.5 -0.4 76 193-270 82-165 (206)
201 1x3s_A RAS-related protein RAB 98.9 1E-09 3.6E-14 90.3 5.3 75 193-270 89-172 (195)
202 2qtf_A Protein HFLX, GTP-bindi 98.9 1.2E-09 4.2E-14 100.7 6.1 55 217-271 293-349 (364)
203 1ek0_A Protein (GTP-binding pr 98.9 1.5E-10 5E-15 93.0 -0.2 77 193-271 77-164 (170)
204 3ihw_A Centg3; RAS, centaurin, 98.9 4.5E-09 1.5E-13 86.8 8.9 78 192-270 86-174 (184)
205 2f9l_A RAB11B, member RAS onco 98.9 6.7E-10 2.3E-14 92.7 3.9 51 218-270 112-162 (199)
206 3oes_A GTPase rhebl1; small GT 98.9 3.4E-10 1.2E-14 94.6 1.9 76 193-270 97-181 (201)
207 1p9r_A General secretion pathw 98.9 1.9E-10 6.6E-15 107.9 0.3 43 77-119 163-206 (418)
208 3szr_A Interferon-induced GTP- 98.9 1.7E-10 5.8E-15 113.1 -0.0 57 81-137 45-106 (608)
209 3cbq_A GTP-binding protein REM 98.9 4.4E-10 1.5E-14 93.9 2.4 76 193-270 98-182 (195)
210 3c8u_A Fructokinase; YP_612366 98.9 3.2E-11 1.1E-15 102.2 -4.6 31 78-108 19-49 (208)
211 4gzl_A RAS-related C3 botulinu 98.9 4.5E-10 1.6E-14 94.3 2.0 77 193-270 103-199 (204)
212 2g3y_A GTP-binding protein GEM 98.9 1.9E-09 6.6E-14 91.8 5.9 76 193-270 113-197 (211)
213 4djt_A GTP-binding nuclear pro 98.9 2E-10 6.9E-15 96.9 -0.2 76 193-270 86-169 (218)
214 2j1l_A RHO-related GTP-binding 98.9 2.4E-09 8.1E-14 90.5 6.3 97 173-270 84-203 (214)
215 3th5_A RAS-related C3 botulinu 98.4 2.3E-10 8E-15 95.7 0.0 78 193-271 103-200 (204)
216 1s96_A Guanylate kinase, GMP k 98.9 1.4E-09 4.6E-14 93.5 4.6 60 77-140 12-74 (219)
217 1nlf_A Regulatory protein REPA 98.9 4.9E-09 1.7E-13 92.6 8.3 30 78-107 27-56 (279)
218 3reg_A RHO-like small GTPase; 98.9 9.4E-10 3.2E-14 91.1 3.4 77 193-270 96-182 (194)
219 2ffh_A Protein (FFH); SRP54, s 98.9 1.1E-08 3.6E-13 96.2 10.8 166 80-266 97-279 (425)
220 1ewq_A DNA mismatch repair pro 98.9 7.5E-10 2.6E-14 111.0 3.1 99 70-208 567-674 (765)
221 3cph_A RAS-related protein SEC 98.9 4.6E-10 1.6E-14 94.0 1.3 75 193-270 94-176 (213)
222 2hjg_A GTP-binding protein ENG 98.9 4.8E-10 1.6E-14 105.6 1.6 72 193-270 84-159 (436)
223 3bwd_D RAC-like GTP-binding pr 98.8 9.4E-10 3.2E-14 89.6 3.0 77 193-270 81-175 (182)
224 1vma_A Cell division protein F 98.8 5.8E-09 2E-13 94.0 8.4 42 78-119 101-143 (306)
225 2fv8_A H6, RHO-related GTP-bin 98.8 9E-10 3.1E-14 92.5 2.8 77 193-270 98-194 (207)
226 1lw7_A Transcriptional regulat 98.8 6.5E-10 2.2E-14 102.2 2.0 33 76-108 163-197 (365)
227 4dcu_A GTP-binding protein ENG 98.8 1.1E-09 3.9E-14 103.6 3.5 142 81-270 23-179 (456)
228 1mky_A Probable GTP-binding pr 98.8 1.6E-09 5.6E-14 102.0 4.6 75 192-270 82-160 (439)
229 3thx_B DNA mismatch repair pro 98.8 2.6E-09 9E-14 108.8 6.3 106 70-209 661-769 (918)
230 3i8s_A Ferrous iron transport 98.8 1.5E-10 5.3E-15 102.4 -2.5 73 193-270 87-163 (274)
231 2o8b_B DNA mismatch repair pro 98.8 1.4E-09 4.9E-14 112.1 4.2 93 81-209 789-885 (1022)
232 3tr0_A Guanylate kinase, GMP k 98.8 1.5E-09 5.2E-14 90.8 3.7 59 79-140 5-63 (205)
233 3c5c_A RAS-like protein 12; GD 98.8 1.4E-09 4.8E-14 90.0 3.3 76 193-270 93-180 (187)
234 1mh1_A RAC1; GTP-binding, GTPa 98.8 1.2E-09 4E-14 89.2 2.7 77 193-270 78-174 (186)
235 2j37_W Signal recognition part 98.8 8.2E-10 2.8E-14 105.8 2.0 181 80-270 100-307 (504)
236 2fu5_C RAS-related protein RAB 98.8 2.2E-10 7.5E-15 93.7 -1.8 97 172-270 58-165 (183)
237 3cpj_B GTP-binding protein YPT 98.8 4E-10 1.4E-14 95.9 -0.2 76 193-270 87-170 (223)
238 2wjg_A FEOB, ferrous iron tran 98.8 8.5E-10 2.9E-14 90.6 1.3 74 193-271 87-164 (188)
239 3j2k_7 ERF3, eukaryotic polype 98.8 7.9E-09 2.7E-13 97.5 8.1 98 171-268 95-217 (439)
240 2yv5_A YJEQ protein; hydrolase 98.8 2.4E-10 8.3E-15 102.7 -2.2 58 79-137 163-224 (302)
241 3o47_A ADP-ribosylation factor 98.8 2.6E-09 8.8E-14 97.1 4.3 98 172-271 210-322 (329)
242 2w0m_A SSO2452; RECA, SSPF, un 98.8 1.7E-09 6E-14 91.6 3.0 41 78-118 20-61 (235)
243 3jvv_A Twitching mobility prot 98.8 5E-09 1.7E-13 96.3 6.1 39 77-115 119-159 (356)
244 2cxx_A Probable GTP-binding pr 98.8 2.3E-09 8E-14 87.8 3.5 52 216-270 122-178 (190)
245 2gco_A H9, RHO-related GTP-bin 98.8 2.2E-09 7.5E-14 89.7 3.3 77 193-270 98-194 (201)
246 3b1v_A Ferrous iron uptake tra 98.8 2.4E-10 8.3E-15 101.3 -2.7 72 193-270 82-158 (272)
247 3a1s_A Iron(II) transport prot 98.8 1.1E-09 3.7E-14 96.2 1.4 73 193-270 85-161 (258)
248 2atx_A Small GTP binding prote 98.8 3.5E-09 1.2E-13 87.5 4.4 77 193-270 91-187 (194)
249 1j8m_F SRP54, signal recogniti 98.8 8.6E-09 2.9E-13 92.4 7.3 169 78-269 95-284 (297)
250 1tf7_A KAIC; homohexamer, hexa 98.8 1.5E-09 5.3E-14 104.5 2.3 71 67-138 24-98 (525)
251 4dkx_A RAS-related protein RAB 98.8 2.8E-09 9.6E-14 91.2 3.5 94 175-270 66-170 (216)
252 3p26_A Elongation factor 1 alp 98.8 1.5E-09 5.2E-14 103.5 1.9 97 170-266 110-228 (483)
253 2iwr_A Centaurin gamma 1; ANK 98.8 8.4E-09 2.9E-13 83.8 6.1 78 192-270 73-163 (178)
254 2zej_A Dardarin, leucine-rich 98.8 6.6E-09 2.3E-13 85.5 5.2 23 83-105 4-26 (184)
255 4a74_A DNA repair and recombin 98.7 1.7E-08 5.9E-13 85.5 7.8 30 78-107 22-51 (231)
256 3q3j_B RHO-related GTP-binding 98.7 3.3E-09 1.1E-13 89.9 3.1 77 193-270 100-197 (214)
257 3lvq_E ARF-GAP with SH3 domain 98.7 2.4E-09 8.4E-14 102.1 2.4 77 193-271 391-479 (497)
258 1u0l_A Probable GTPase ENGC; p 98.7 2.2E-09 7.5E-14 96.3 1.7 59 79-137 167-229 (301)
259 3thx_A DNA mismatch repair pro 98.7 1.2E-08 4.3E-13 104.1 7.3 32 71-102 651-683 (934)
260 1m7b_A RND3/RHOE small GTP-bin 98.7 2.8E-09 9.6E-14 87.6 2.1 77 193-270 80-177 (184)
261 2x77_A ADP-ribosylation factor 98.7 2.2E-09 7.7E-14 88.3 1.4 76 193-270 91-178 (189)
262 2q3h_A RAS homolog gene family 98.7 3.5E-09 1.2E-13 88.0 2.5 77 193-270 93-189 (201)
263 2j0v_A RAC-like GTP-binding pr 98.7 2.5E-09 8.7E-14 89.7 1.4 77 193-270 82-174 (212)
264 2px0_A Flagellar biosynthesis 98.7 9.2E-08 3.2E-12 85.6 11.7 166 78-267 102-283 (296)
265 1s0u_A EIF-2-gamma, translatio 98.7 2.4E-08 8.2E-13 93.2 7.9 101 171-271 81-193 (408)
266 3qkt_A DNA double-strand break 98.7 2.5E-08 8.6E-13 90.7 7.6 37 173-209 244-289 (339)
267 2gza_A Type IV secretion syste 98.7 1.5E-09 5.1E-14 99.9 -0.7 63 72-136 166-230 (361)
268 3euj_A Chromosome partition pr 98.7 6.7E-09 2.3E-13 98.9 3.5 50 70-120 19-69 (483)
269 2ewv_A Twitching motility prot 98.7 2E-08 6.7E-13 92.8 6.4 55 78-136 133-189 (372)
270 3t34_A Dynamin-related protein 98.7 1.7E-08 5.8E-13 92.5 5.9 87 180-268 158-253 (360)
271 1gwn_A RHO-related GTP-binding 98.7 4.5E-09 1.6E-13 88.5 1.9 77 193-270 101-198 (205)
272 1zun_B Sulfate adenylate trans 98.7 1.7E-08 5.9E-13 94.9 5.8 97 172-268 105-216 (434)
273 2aka_B Dynamin-1; fusion prote 98.7 3.8E-09 1.3E-13 93.5 1.1 73 197-269 168-246 (299)
274 3dpu_A RAB family protein; roc 98.7 1.2E-09 4.2E-14 105.3 -2.5 76 193-270 123-202 (535)
275 2cvh_A DNA repair and recombin 98.7 6.7E-08 2.3E-12 81.3 8.6 39 78-118 17-55 (220)
276 1kk1_A EIF2gamma; initiation o 98.6 5.6E-08 1.9E-12 90.6 8.7 100 172-271 84-195 (410)
277 2xtp_A GTPase IMAP family memb 98.6 2.3E-09 7.8E-14 93.4 -0.9 77 193-270 107-202 (260)
278 1wb9_A DNA mismatch repair pro 98.6 6.8E-09 2.3E-13 104.6 2.3 35 71-105 597-631 (800)
279 2ywe_A GTP-binding protein LEP 98.6 3.4E-08 1.2E-12 96.5 7.0 96 172-270 74-178 (600)
280 3cb4_D GTP-binding protein LEP 98.6 1.7E-08 5.9E-13 98.6 4.8 96 172-270 72-176 (599)
281 2c78_A Elongation factor TU-A; 98.6 8.4E-09 2.9E-13 96.1 2.4 91 171-262 75-180 (405)
282 2j69_A Bacterial dynamin-like 98.6 6E-08 2.1E-12 96.4 8.5 27 78-104 66-92 (695)
283 2obl_A ESCN; ATPase, hydrolase 98.6 1.5E-08 5.2E-13 92.8 3.6 49 68-117 59-108 (347)
284 1sq5_A Pantothenate kinase; P- 98.6 3.1E-08 1.1E-12 89.0 5.6 54 79-133 78-134 (308)
285 1pzn_A RAD51, DNA repair and r 98.6 1.7E-08 6E-13 92.4 4.0 28 78-105 128-155 (349)
286 3lxx_A GTPase IMAP family memb 98.6 3.4E-08 1.2E-12 84.9 5.6 26 81-106 29-54 (239)
287 3gj0_A GTP-binding nuclear pro 98.6 1.5E-09 5.2E-14 91.9 -3.1 74 193-270 89-169 (221)
288 2elf_A Protein translation elo 98.6 2.8E-08 9.4E-13 91.8 5.0 94 173-270 62-174 (370)
289 1odf_A YGR205W, hypothetical 3 98.6 5.7E-09 1.9E-13 93.3 0.2 123 79-207 29-167 (290)
290 3izq_1 HBS1P, elongation facto 98.6 5.7E-09 1.9E-13 102.4 0.2 96 171-266 245-362 (611)
291 1d2e_A Elongation factor TU (E 98.6 5.9E-08 2E-12 90.2 6.5 99 171-270 66-189 (397)
292 4e22_A Cytidylate kinase; P-lo 98.6 1E-08 3.6E-13 89.4 1.2 60 77-136 23-95 (252)
293 3t5d_A Septin-7; GTP-binding p 98.6 4E-08 1.4E-12 86.6 4.9 75 194-270 118-198 (274)
294 3tr5_A RF-3, peptide chain rel 98.6 9.1E-08 3.1E-12 92.3 7.8 61 171-231 82-149 (528)
295 1jwy_B Dynamin A GTPase domain 98.6 1E-08 3.5E-13 91.6 1.0 26 80-105 23-48 (315)
296 2cjw_A GTP-binding protein GEM 98.5 1.1E-08 3.7E-13 85.2 0.6 77 192-270 81-166 (192)
297 3llu_A RAS-related GTP-binding 98.5 6.7E-09 2.3E-13 86.3 -0.7 77 193-270 97-191 (196)
298 1lvg_A Guanylate kinase, GMP k 98.5 2.6E-08 8.9E-13 83.7 2.8 28 79-106 2-29 (198)
299 1ls1_A Signal recognition part 98.5 4.1E-07 1.4E-11 81.3 10.8 175 76-268 94-281 (295)
300 1jny_A EF-1-alpha, elongation 98.5 9E-08 3.1E-12 90.0 6.5 99 170-268 83-205 (435)
301 4eun_A Thermoresistant glucoki 98.5 1.2E-07 4E-12 79.5 6.5 55 79-137 27-81 (200)
302 1dar_A EF-G, elongation factor 98.5 1.3E-07 4.5E-12 94.0 7.5 61 171-231 77-144 (691)
303 3avx_A Elongation factor TS, e 98.5 8.2E-08 2.8E-12 99.3 6.2 98 171-269 359-479 (1289)
304 2rdo_7 EF-G, elongation factor 98.5 2.3E-07 7.9E-12 92.4 9.2 61 171-231 82-149 (704)
305 2wkq_A NPH1-1, RAS-related C3 98.5 2.5E-08 8.6E-13 89.1 1.8 77 193-270 228-324 (332)
306 1qhl_A Protein (cell division 98.5 4.7E-09 1.6E-13 90.7 -3.4 37 82-118 28-65 (227)
307 3a00_A Guanylate kinase, GMP k 98.5 5.5E-08 1.9E-12 80.6 3.2 28 81-108 1-28 (186)
308 1zo1_I IF2, translation initia 98.5 5.2E-09 1.8E-13 100.2 -3.8 75 193-270 76-161 (501)
309 2v3c_C SRP54, signal recogniti 98.5 5.3E-09 1.8E-13 98.5 -3.7 137 81-231 99-253 (432)
310 3mca_A HBS1, elongation factor 98.5 5.3E-09 1.8E-13 102.2 -4.1 73 192-264 279-371 (592)
311 3l0i_B RAS-related protein RAB 98.5 3.3E-11 1.1E-15 100.6 -17.3 77 193-271 107-191 (199)
312 1n0w_A DNA repair protein RAD5 98.4 2.9E-07 9.9E-12 78.5 7.1 30 78-107 21-52 (243)
313 2kjq_A DNAA-related protein; s 98.4 1.1E-07 3.7E-12 76.6 4.1 30 80-109 35-64 (149)
314 1t9h_A YLOQ, probable GTPase E 98.4 1.6E-08 5.4E-13 91.1 -1.0 57 79-137 171-232 (307)
315 3izy_P Translation initiation 98.4 1.5E-09 5.2E-14 104.8 -8.2 78 193-270 77-162 (537)
316 3r7w_A Gtpase1, GTP-binding pr 98.4 3.8E-08 1.3E-12 88.4 1.4 75 193-268 82-173 (307)
317 2qag_A Septin-2, protein NEDD5 98.4 4.7E-08 1.6E-12 89.9 1.9 44 217-262 175-220 (361)
318 3lnc_A Guanylate kinase, GMP k 98.4 6.4E-08 2.2E-12 82.8 2.6 35 73-107 19-54 (231)
319 1f60_A Elongation factor EEF1A 98.4 1.1E-07 3.8E-12 90.0 4.2 97 171-267 85-203 (458)
320 2x2e_A Dynamin-1; nitration, h 98.4 3.5E-08 1.2E-12 90.2 0.5 26 80-105 30-55 (353)
321 1g7s_A Translation initiation 98.4 4.1E-08 1.4E-12 95.9 1.0 78 193-270 95-212 (594)
322 1nrj_B SR-beta, signal recogni 98.4 2.6E-07 9E-12 77.6 5.7 26 80-105 11-36 (218)
323 1r5b_A Eukaryotic peptide chai 98.4 1.3E-07 4.3E-12 89.9 3.2 97 171-267 121-243 (467)
324 2h5e_A Peptide chain release f 98.4 9.5E-08 3.3E-12 92.2 2.2 102 171-272 82-191 (529)
325 2j41_A Guanylate kinase; GMP, 98.4 3.7E-07 1.3E-11 76.0 5.5 56 79-138 4-61 (207)
326 3lxw_A GTPase IMAP family memb 98.4 1.2E-07 4.1E-12 82.4 2.3 24 81-104 21-44 (247)
327 3j25_A Tetracycline resistance 98.4 3.3E-07 1.1E-11 90.3 5.8 120 84-231 5-134 (638)
328 2x8a_A Nuclear valosin-contain 98.3 1.3E-07 4.4E-12 83.7 1.8 56 78-136 43-98 (274)
329 2xex_A Elongation factor G; GT 98.3 1.9E-07 6.5E-12 92.8 3.0 95 171-270 75-179 (693)
330 3qq5_A Small GTP-binding prote 98.3 7.4E-09 2.5E-13 97.3 -6.9 74 193-271 115-191 (423)
331 2qpt_A EH domain-containing pr 98.3 8.7E-07 3E-11 85.8 7.4 25 80-104 64-88 (550)
332 3vqt_A RF-3, peptide chain rel 98.3 2.2E-07 7.5E-12 90.0 2.5 61 171-231 100-167 (548)
333 1kgd_A CASK, peripheral plasma 98.3 4.6E-07 1.6E-11 74.6 3.8 35 80-114 4-40 (180)
334 3uie_A Adenylyl-sulfate kinase 98.3 1.6E-07 5.5E-12 78.6 0.9 43 76-118 20-64 (200)
335 2bdt_A BH3686; alpha-beta prot 98.2 3.1E-07 1E-11 75.9 2.3 36 81-118 2-37 (189)
336 3c5h_A Glucocorticoid receptor 98.2 5.4E-07 1.9E-11 78.5 4.0 76 193-271 164-250 (255)
337 1rz3_A Hypothetical protein rb 98.2 5.4E-07 1.9E-11 75.5 3.7 42 79-120 20-62 (201)
338 2oap_1 GSPE-2, type II secreti 98.2 6.1E-07 2.1E-11 86.2 4.4 42 76-117 255-297 (511)
339 3zvr_A Dynamin-1; hydrolase, D 98.2 2E-07 6.9E-12 93.1 1.0 75 193-270 189-272 (772)
340 2ged_A SR-beta, signal recogni 98.2 1.7E-06 6E-11 70.9 6.4 26 80-105 47-72 (193)
341 3tau_A Guanylate kinase, GMP k 98.2 1.1E-06 3.7E-11 74.1 4.2 29 79-107 6-34 (208)
342 2bbw_A Adenylate kinase 4, AK4 98.2 4.8E-07 1.7E-11 78.1 2.0 37 80-116 26-66 (246)
343 3lda_A DNA repair protein RAD5 98.2 2.4E-06 8.3E-11 79.6 6.6 30 78-107 175-206 (400)
344 1sxj_E Activator 1 40 kDa subu 98.2 6.4E-06 2.2E-10 74.3 9.2 55 81-137 36-92 (354)
345 1wxq_A GTP-binding protein; st 98.1 7.7E-07 2.6E-11 82.8 2.7 49 216-268 214-262 (397)
346 2vp4_A Deoxynucleoside kinase; 98.1 1.7E-06 5.7E-11 74.1 4.4 37 78-117 17-53 (230)
347 3ney_A 55 kDa erythrocyte memb 98.1 1.7E-06 5.7E-11 73.0 3.8 27 80-106 18-44 (197)
348 1knq_A Gluconate kinase; ALFA/ 98.1 2.1E-06 7E-11 69.9 4.2 53 79-136 6-59 (175)
349 3tqc_A Pantothenate kinase; bi 98.1 2.8E-06 9.7E-11 76.8 4.7 40 82-121 93-135 (321)
350 3kta_A Chromosome segregation 98.0 2.7E-06 9.1E-11 69.6 4.0 28 80-108 26-53 (182)
351 2xxa_A Signal recognition part 98.0 5E-05 1.7E-09 71.4 12.3 143 80-231 99-255 (433)
352 1kag_A SKI, shikimate kinase I 98.0 3.2E-06 1.1E-10 68.4 3.1 27 80-106 3-29 (173)
353 2dr3_A UPF0273 protein PH0284; 98.0 4.3E-06 1.5E-10 71.2 4.0 59 78-136 20-79 (247)
354 3cr8_A Sulfate adenylyltranfer 97.9 3.7E-06 1.3E-10 81.4 3.3 38 78-115 366-405 (552)
355 1cke_A CK, MSSA, protein (cyti 97.9 7.4E-07 2.5E-11 75.4 -1.4 25 81-105 5-29 (227)
356 3ec2_A DNA replication protein 97.9 2.2E-06 7.5E-11 70.2 1.3 30 79-108 36-65 (180)
357 3hr8_A Protein RECA; alpha and 97.9 7.9E-06 2.7E-10 74.9 5.1 57 78-136 58-115 (356)
358 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 7E-06 2.4E-10 76.2 4.5 45 215-259 223-269 (392)
359 1ixz_A ATP-dependent metallopr 97.9 1.1E-06 3.8E-11 75.9 -0.9 38 78-118 48-85 (254)
360 1h65_A Chloroplast outer envel 97.9 5.2E-06 1.8E-10 72.7 3.2 24 81-104 39-62 (270)
361 1iy2_A ATP-dependent metallopr 97.9 1.2E-06 4.1E-11 77.0 -0.9 37 79-118 73-109 (278)
362 2yvu_A Probable adenylyl-sulfa 97.9 7.8E-06 2.7E-10 67.2 3.7 43 73-115 5-48 (186)
363 4a1f_A DNAB helicase, replicat 97.9 3.1E-05 1E-09 70.5 7.9 150 78-260 43-207 (338)
364 3vaa_A Shikimate kinase, SK; s 97.8 9.1E-06 3.1E-10 67.7 3.3 35 71-105 15-49 (199)
365 3nwj_A ATSK2; P loop, shikimat 97.8 2.9E-06 9.8E-11 74.1 -0.2 40 67-106 31-73 (250)
366 2pez_A Bifunctional 3'-phospho 97.8 1.2E-05 4.1E-10 65.6 3.1 31 79-109 3-33 (179)
367 4fn5_A EF-G 1, elongation fact 97.8 1.6E-05 5.6E-10 79.1 4.7 59 173-231 87-152 (709)
368 2zr9_A Protein RECA, recombina 97.8 5.2E-05 1.8E-09 69.2 7.7 40 79-118 59-99 (349)
369 2qt1_A Nicotinamide riboside k 97.7 2.6E-05 8.9E-10 65.1 5.1 36 79-117 19-54 (207)
370 2r6a_A DNAB helicase, replicat 97.7 0.00018 6E-09 67.8 10.5 42 78-119 200-243 (454)
371 1np6_A Molybdopterin-guanine d 97.7 2.4E-05 8.2E-10 64.5 3.9 39 81-119 6-45 (174)
372 3def_A T7I23.11 protein; chlor 97.7 1.3E-05 4.5E-10 69.8 2.4 24 81-104 36-59 (262)
373 1w1w_A Structural maintenance 97.6 2.5E-05 8.6E-10 73.0 3.7 32 178-209 335-372 (430)
374 1in4_A RUVB, holliday junction 97.6 3.6E-06 1.2E-10 76.2 -2.7 24 82-105 52-75 (334)
375 4eaq_A DTMP kinase, thymidylat 97.6 7.4E-05 2.5E-09 64.0 5.6 29 79-107 24-52 (229)
376 2o5v_A DNA replication and rep 97.6 3.4E-05 1.1E-09 70.8 3.5 32 178-209 267-309 (359)
377 1jjv_A Dephospho-COA kinase; P 97.6 3.4E-05 1.1E-09 64.3 3.3 23 82-104 3-25 (206)
378 1n0u_A EF-2, elongation factor 97.6 1.2E-05 4.1E-10 81.5 0.5 59 171-229 98-163 (842)
379 3m6a_A ATP-dependent protease 97.6 3.8E-05 1.3E-09 74.1 3.8 39 77-115 104-143 (543)
380 1xjc_A MOBB protein homolog; s 97.5 5.4E-05 1.8E-09 62.1 3.8 39 81-119 4-43 (169)
381 2qor_A Guanylate kinase; phosp 97.5 4.3E-05 1.5E-09 63.8 3.3 29 78-106 9-37 (204)
382 2if2_A Dephospho-COA kinase; a 97.5 4.5E-05 1.5E-09 63.3 3.2 21 83-103 3-23 (204)
383 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.6E-05 1.9E-09 60.4 3.3 24 81-104 23-46 (149)
384 1svm_A Large T antigen; AAA+ f 97.4 4.4E-05 1.5E-09 70.5 2.5 30 76-105 164-193 (377)
385 1m7g_A Adenylylsulfate kinase; 97.4 4.4E-05 1.5E-09 64.1 2.1 33 77-109 21-54 (211)
386 3k1j_A LON protease, ATP-depen 97.4 4.1E-05 1.4E-09 74.8 2.0 55 64-118 43-99 (604)
387 1f2t_B RAD50 ABC-ATPase; DNA d 97.4 0.00012 4.3E-09 58.6 3.9 38 172-209 52-98 (148)
388 3bh0_A DNAB-like replicative h 97.3 0.00079 2.7E-08 60.2 9.3 40 78-117 65-105 (315)
389 3t61_A Gluconokinase; PSI-biol 97.3 8.8E-05 3E-09 61.6 2.8 25 81-105 18-42 (202)
390 3h2y_A GTPase family protein; 97.3 3.4E-05 1.2E-09 70.9 0.1 26 80-105 159-184 (368)
391 3r7w_B Gtpase2, GTP-binding pr 97.3 4.3E-05 1.5E-09 69.2 0.6 22 84-105 2-23 (331)
392 3cm0_A Adenylate kinase; ATP-b 97.3 0.0001 3.6E-09 60.0 2.8 26 80-105 3-28 (186)
393 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00014 4.9E-09 69.4 4.1 54 79-135 64-117 (499)
394 3kb2_A SPBC2 prophage-derived 97.3 0.00012 4.3E-09 58.5 3.1 25 82-106 2-26 (173)
395 3ice_A Transcription terminati 97.2 0.00026 9E-09 65.5 4.6 49 55-106 137-199 (422)
396 1qhx_A CPT, protein (chloramph 97.2 0.00021 7.1E-09 57.8 3.6 26 81-106 3-28 (178)
397 2plr_A DTMP kinase, probable t 97.2 0.00041 1.4E-08 57.4 5.4 32 80-111 3-34 (213)
398 3qks_A DNA double-strand break 97.2 0.00019 6.4E-09 60.3 3.3 24 81-104 23-46 (203)
399 1y63_A LMAJ004144AAA protein; 97.2 0.00026 8.7E-09 58.1 3.9 26 79-104 8-33 (184)
400 1q3t_A Cytidylate kinase; nucl 97.1 0.00021 7.3E-09 61.0 3.3 28 78-105 13-40 (236)
401 3pih_A Uvrabc system protein A 97.1 0.0006 2.1E-08 69.5 7.1 51 159-209 445-501 (916)
402 2v54_A DTMP kinase, thymidylat 97.1 0.00036 1.2E-08 57.5 4.1 26 80-105 3-28 (204)
403 1gtv_A TMK, thymidylate kinase 97.1 0.00011 3.8E-09 61.2 0.9 31 83-113 2-33 (214)
404 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00026 9E-09 65.6 3.5 26 79-104 20-45 (396)
405 3lw7_A Adenylate kinase relate 97.1 0.00027 9.2E-09 56.2 3.1 20 82-101 2-21 (179)
406 2z0h_A DTMP kinase, thymidylat 97.1 0.0004 1.4E-08 56.8 4.2 27 83-109 2-28 (197)
407 1kht_A Adenylate kinase; phosp 97.1 0.00027 9.3E-09 57.4 3.1 27 81-107 3-29 (192)
408 2rhm_A Putative kinase; P-loop 97.1 0.00029 1E-08 57.5 3.2 26 80-105 4-29 (193)
409 2jaq_A Deoxyguanosine kinase; 97.0 0.00028 9.7E-09 58.0 3.0 24 83-106 2-25 (205)
410 3end_A Light-independent proto 97.0 0.013 4.5E-07 51.5 14.1 42 79-120 39-81 (307)
411 1sxj_C Activator 1 40 kDa subu 97.0 6.2E-05 2.1E-09 67.8 -1.2 49 70-118 33-84 (340)
412 1vht_A Dephospho-COA kinase; s 97.0 0.00045 1.5E-08 57.9 3.7 23 81-103 4-26 (218)
413 2p5t_B PEZT; postsegregational 97.0 0.00032 1.1E-08 60.7 2.8 28 79-106 30-57 (253)
414 3io5_A Recombination and repai 97.0 0.0024 8.4E-08 57.5 8.5 38 79-117 27-67 (333)
415 2c95_A Adenylate kinase 1; tra 96.9 0.00044 1.5E-08 56.5 3.3 27 79-105 7-33 (196)
416 1ly1_A Polynucleotide kinase; 96.9 0.00046 1.6E-08 55.5 3.4 22 82-103 3-24 (181)
417 1uf9_A TT1252 protein; P-loop, 96.9 0.00053 1.8E-08 56.4 3.6 25 80-104 7-31 (203)
418 1via_A Shikimate kinase; struc 96.9 0.00035 1.2E-08 56.5 2.5 23 83-105 6-28 (175)
419 1ex7_A Guanylate kinase; subst 96.9 0.00045 1.5E-08 57.4 3.1 24 83-106 3-26 (186)
420 2wwf_A Thymidilate kinase, put 96.9 0.00045 1.5E-08 57.3 3.1 28 79-106 8-35 (212)
421 2r6f_A Excinuclease ABC subuni 96.9 0.0016 5.4E-08 66.6 7.5 49 161-209 487-541 (972)
422 2ze6_A Isopentenyl transferase 96.9 0.00045 1.5E-08 59.9 3.0 25 82-106 2-26 (253)
423 3iij_A Coilin-interacting nucl 96.9 0.00044 1.5E-08 56.1 2.7 26 80-105 10-35 (180)
424 1u0l_A Probable GTPase ENGC; p 96.9 0.00066 2.3E-08 60.4 4.0 77 193-271 86-168 (301)
425 3trf_A Shikimate kinase, SK; a 96.9 0.00052 1.8E-08 55.8 3.1 25 81-105 5-29 (185)
426 1nn5_A Similar to deoxythymidy 96.9 0.00053 1.8E-08 56.9 3.2 28 79-106 7-34 (215)
427 2q6t_A DNAB replication FORK h 96.9 0.0067 2.3E-07 56.7 11.1 41 78-118 197-239 (444)
428 4edh_A DTMP kinase, thymidylat 96.9 0.001 3.5E-08 56.3 5.0 39 80-119 5-44 (213)
429 2vf7_A UVRA2, excinuclease ABC 96.9 0.0017 5.8E-08 65.7 7.4 49 161-209 362-416 (842)
430 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00069 2.4E-08 62.2 4.1 36 80-115 34-70 (392)
431 2ygr_A Uvrabc system protein A 96.8 0.0017 5.7E-08 66.6 7.1 50 160-209 503-558 (993)
432 2yv5_A YJEQ protein; hydrolase 96.8 0.00069 2.4E-08 60.3 3.9 77 193-271 81-164 (302)
433 1nks_A Adenylate kinase; therm 96.8 0.00051 1.7E-08 55.8 2.8 26 83-108 3-28 (194)
434 1tev_A UMP-CMP kinase; ploop, 96.8 0.00067 2.3E-08 55.2 3.4 25 81-105 3-27 (196)
435 2pbr_A DTMP kinase, thymidylat 96.8 0.00088 3E-08 54.5 4.0 24 83-106 2-25 (195)
436 1aky_A Adenylate kinase; ATP:A 96.8 0.0007 2.4E-08 56.9 3.4 26 80-105 3-28 (220)
437 2vli_A Antibiotic resistance p 96.8 0.00053 1.8E-08 55.5 2.4 27 80-106 4-30 (183)
438 2bwj_A Adenylate kinase 5; pho 96.7 0.00072 2.5E-08 55.4 3.1 26 80-105 11-36 (199)
439 4ad8_A DNA repair protein RECN 96.7 0.00042 1.4E-08 66.3 1.9 32 178-209 399-434 (517)
440 3r20_A Cytidylate kinase; stru 96.7 0.00067 2.3E-08 58.4 3.0 25 81-105 9-33 (233)
441 1jal_A YCHF protein; nucleotid 96.7 0.0011 3.7E-08 60.8 4.3 23 81-103 2-24 (363)
442 3ake_A Cytidylate kinase; CMP 96.7 0.00075 2.6E-08 55.7 3.0 23 83-105 4-26 (208)
443 1ypw_A Transitional endoplasmi 96.7 0.00076 2.6E-08 68.0 3.3 39 79-118 236-274 (806)
444 1gvn_B Zeta; postsegregational 96.7 0.0008 2.7E-08 59.5 3.1 26 80-105 32-57 (287)
445 4tmk_A Protein (thymidylate ki 96.7 0.0013 4.4E-08 55.8 4.2 41 80-121 2-44 (213)
446 1ukz_A Uridylate kinase; trans 96.7 0.0012 4E-08 54.5 3.9 26 80-105 14-39 (203)
447 1zd8_A GTP:AMP phosphotransfer 96.7 0.00099 3.4E-08 56.3 3.4 26 80-105 6-31 (227)
448 1u94_A RECA protein, recombina 96.6 0.0043 1.5E-07 56.6 7.7 41 78-118 60-101 (356)
449 2cdn_A Adenylate kinase; phosp 96.6 0.0011 3.9E-08 54.7 3.5 25 81-105 20-44 (201)
450 3fb4_A Adenylate kinase; psych 96.6 0.00093 3.2E-08 55.7 3.0 23 83-105 2-24 (216)
451 2z43_A DNA repair and recombin 96.6 0.0016 5.5E-08 58.4 4.7 41 78-118 104-151 (324)
452 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00077 2.6E-08 61.6 2.6 30 77-106 18-49 (359)
453 3dl0_A Adenylate kinase; phosp 96.6 0.0011 3.7E-08 55.4 3.3 23 83-105 2-24 (216)
454 2iyv_A Shikimate kinase, SK; t 96.6 0.00083 2.8E-08 54.6 2.4 24 82-105 3-26 (184)
455 1qf9_A UMP/CMP kinase, protein 96.6 0.001 3.4E-08 54.0 2.8 25 81-105 6-30 (194)
456 3auy_A DNA double-strand break 96.6 0.001 3.6E-08 60.8 3.1 32 178-209 282-322 (371)
457 1zak_A Adenylate kinase; ATP:A 96.6 0.00098 3.4E-08 56.0 2.7 26 81-106 5-30 (222)
458 1e6c_A Shikimate kinase; phosp 96.6 0.00097 3.3E-08 53.4 2.5 24 82-105 3-26 (173)
459 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 4.1E-08 52.6 3.0 23 83-105 2-24 (168)
460 1zuh_A Shikimate kinase; alpha 96.5 0.0012 4.1E-08 52.8 3.0 25 81-105 7-31 (168)
461 2w58_A DNAI, primosome compone 96.5 0.002 6.7E-08 53.1 4.3 32 82-113 55-87 (202)
462 3bos_A Putative DNA replicatio 96.5 0.0016 5.6E-08 54.4 3.8 35 80-114 51-86 (242)
463 4fcw_A Chaperone protein CLPB; 96.5 0.0021 7E-08 56.5 4.4 36 81-116 47-83 (311)
464 1fnn_A CDC6P, cell division co 96.5 0.0043 1.5E-07 55.9 6.7 26 83-108 46-71 (389)
465 3kta_B Chromosome segregation 96.5 0.0014 4.8E-08 53.7 3.0 32 178-209 66-103 (173)
466 1lv7_A FTSH; alpha/beta domain 96.5 0.0014 4.7E-08 56.3 3.1 24 83-106 47-70 (257)
467 3lv8_A DTMP kinase, thymidylat 96.5 0.002 7E-08 55.4 4.1 41 80-120 26-67 (236)
468 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0016 5.6E-08 56.4 3.5 27 80-106 3-29 (260)
469 3v9p_A DTMP kinase, thymidylat 96.4 0.0014 4.7E-08 56.2 2.8 29 79-107 23-51 (227)
470 3umf_A Adenylate kinase; rossm 96.4 0.0017 5.7E-08 55.3 3.3 27 79-105 27-53 (217)
471 2grj_A Dephospho-COA kinase; T 96.4 0.0018 6E-08 53.9 3.2 25 81-105 12-36 (192)
472 3cnl_A YLQF, putative uncharac 96.4 0.0083 2.8E-07 52.2 7.7 73 193-271 23-96 (262)
473 3tlx_A Adenylate kinase 2; str 96.4 0.0021 7.2E-08 55.1 3.7 27 79-105 27-53 (243)
474 2ius_A DNA translocase FTSK; n 96.4 0.0026 9E-08 60.8 4.7 42 79-120 165-209 (512)
475 3be4_A Adenylate kinase; malar 96.4 0.0016 5.3E-08 54.8 2.8 25 81-105 5-29 (217)
476 2xb4_A Adenylate kinase; ATP-b 96.4 0.0017 5.7E-08 54.9 2.9 23 83-105 2-24 (223)
477 1uj2_A Uridine-cytidine kinase 96.4 0.0019 6.3E-08 55.6 3.3 26 81-106 22-47 (252)
478 1a7j_A Phosphoribulokinase; tr 96.4 0.00088 3E-08 59.4 1.2 38 80-117 4-42 (290)
479 2dby_A GTP-binding protein; GD 96.3 0.0018 6E-08 59.5 3.1 49 216-266 201-252 (368)
480 1ak2_A Adenylate kinase isoenz 96.3 0.0023 7.9E-08 54.3 3.5 27 79-105 14-40 (233)
481 1puj_A YLQF, conserved hypothe 96.3 0.0063 2.1E-07 53.6 6.4 73 193-269 25-99 (282)
482 1v5w_A DMC1, meiotic recombina 96.3 0.0042 1.4E-07 56.2 5.4 41 78-118 119-166 (343)
483 1e4v_A Adenylate kinase; trans 96.3 0.0019 6.4E-08 54.0 2.7 23 83-105 2-24 (214)
484 1xp8_A RECA protein, recombina 96.3 0.012 4.2E-07 53.8 8.4 40 79-118 72-112 (366)
485 2xau_A PRE-mRNA-splicing facto 96.2 0.0019 6.5E-08 64.9 3.1 28 79-106 107-134 (773)
486 3cf0_A Transitional endoplasmi 96.2 0.0027 9.4E-08 56.1 3.8 28 79-106 47-74 (301)
487 4dzz_A Plasmid partitioning pr 96.2 0.042 1.4E-06 44.8 10.9 132 83-231 3-145 (206)
488 2orw_A Thymidine kinase; TMTK, 96.2 0.0025 8.7E-08 52.5 3.3 36 80-115 2-38 (184)
489 4hlc_A DTMP kinase, thymidylat 96.2 0.0053 1.8E-07 51.5 5.2 45 81-126 2-46 (205)
490 3ld9_A DTMP kinase, thymidylat 96.2 0.0028 9.7E-08 54.1 3.3 42 79-120 19-62 (223)
491 2f6r_A COA synthase, bifunctio 96.2 0.0026 8.8E-08 55.9 3.1 23 81-103 75-97 (281)
492 3sr0_A Adenylate kinase; phosp 96.1 0.0026 9E-08 53.5 2.9 23 83-105 2-24 (206)
493 3k9g_A PF-32 protein; ssgcid, 96.1 0.054 1.9E-06 46.4 11.3 40 80-120 26-67 (267)
494 4a9a_A Ribosome-interacting GT 96.1 0.0025 8.5E-08 58.7 2.7 24 82-105 73-96 (376)
495 1jbk_A CLPB protein; beta barr 96.1 0.0042 1.4E-07 49.5 3.8 27 80-106 42-68 (195)
496 2qby_A CDC6 homolog 1, cell di 96.1 0.0029 1E-07 56.7 3.1 29 79-107 43-71 (386)
497 3tmk_A Thymidylate kinase; pho 96.0 0.0086 3E-07 50.7 5.7 29 79-107 3-31 (216)
498 2ocp_A DGK, deoxyguanosine kin 96.0 0.0036 1.2E-07 53.3 3.4 26 81-106 2-27 (241)
499 3llm_A ATP-dependent RNA helic 96.0 0.0039 1.3E-07 52.9 3.5 25 79-103 74-98 (235)
500 4ad8_A DNA repair protein RECN 96.0 0.0035 1.2E-07 59.9 3.4 25 79-104 59-83 (517)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=1.1e-26 Score=207.46 Aligned_cols=152 Identities=14% Similarity=-0.023 Sum_probs=113.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhcc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNG 131 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig 131 (275)
.+..+.|++ ...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....+++.+|
T Consensus 11 ~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 11 EELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 345566654 344666666677889999999999999999999999999999 9999999887422 2335667899
Q ss_pred ccCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 132 ALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 132 ~v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
|+||++. +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999752 2222221111 11222234456678888777777888888 999999999999999 9999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| |++++|...
T Consensus 168 DEPts~LD~~~ 178 (275)
T 3gfo_A 168 DEPTAGLDPMG 178 (275)
T ss_dssp ECTTTTCCHHH
T ss_pred ECccccCCHHH
Confidence 9 999998643
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=2.5e-26 Score=212.08 Aligned_cols=155 Identities=15% Similarity=0.013 Sum_probs=115.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRN 130 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~i 130 (275)
.+..+.|++..+...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+ +++++
T Consensus 28 ~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~I 107 (366)
T 3tui_C 28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI 107 (366)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTE
T ss_pred EeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcE
Confidence 445555544111234566666677889999999999999999999999999999 99999999987765543 35679
Q ss_pred cccCchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 131 GALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 131 g~v~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
||+||++. +++.++... .....+....+.+.|+.+++....++.+.+ |+||+||++|||||+ +|+|+|+
T Consensus 108 g~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLl 187 (366)
T 3tui_C 108 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187 (366)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 233222110 111122234456678888877777888888 999999999999999 9999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| ||+++|...
T Consensus 188 DEPTs~LD~~~ 198 (366)
T 3tui_C 188 DQATSALDPAT 198 (366)
T ss_dssp ESTTTTSCHHH
T ss_pred ECCCccCCHHH
Confidence 9 999998643
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=4.8e-26 Score=198.82 Aligned_cols=140 Identities=17% Similarity=0.044 Sum_probs=105.0
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH------
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~------ 138 (275)
++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......++ ++.+||+||++.
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 555666667889999999999999999999999999999 999999988876655432 346999999862
Q ss_pred --HHHHhcCC----CccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 --RAVETGGC----PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 --~~~~~~~~----~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.++.. ......+....+.+.++.+..... .+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~ 179 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 23322210 011122223445556777766543 3667777 999999999999999 99999999 99999975
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 180 ~ 180 (235)
T 3tif_A 180 T 180 (235)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=1.3e-25 Score=199.20 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=108.0
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC--CCChHHHHHhccccCchhH---
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI--- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~--~~~~~~~~~~ig~v~q~~~--- 138 (275)
|++.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++. ......+++.+||+||++.
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 33445566666667889999999999999999999999999999 99999988774 1223456678999999752
Q ss_pred -----HHHHhcC--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 -----RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 -----~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.++. .......+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~ 193 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE 193 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 2332211 00111112223445677878776667777777 999999999999999 99999999 99999975
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 194 ~ 194 (263)
T 2olj_A 194 M 194 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=1.3e-25 Score=199.51 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=111.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......++++.++|++|++.
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV 102 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBH
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCH
Confidence 455666666677889999999999999999999999999998 999999999877777777888999999752
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCCcc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d~~ 208 (275)
+++.++.... ...+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus 103 ~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 103 SEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 3333332221 1112223445577777776667777777 999999999999998 79999999 99999864
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 182 ~ 182 (266)
T 4g1u_C 182 H 182 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.2e-25 Score=196.97 Aligned_cols=143 Identities=18% Similarity=0.054 Sum_probs=104.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~------ 138 (275)
+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+++ +.+||+||++.
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~lt 97 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCc
Confidence 344555666667889999999999999999999999999999 9999999887655544443 45999999752
Q ss_pred --HHHHhcCCCccchHHHHHHHHHHHHHhh-ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++........+....+.+.++.+. .....+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 3343432111111111223344566663 55556666777 999999999999999 99999999 999999754
No 7
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.92 E-value=1.3e-25 Score=200.99 Aligned_cols=145 Identities=14% Similarity=0.012 Sum_probs=108.1
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC--CCChHHHHHhccccCchhH---
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI--- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~--~~~~~~~~~~ig~v~q~~~--- 138 (275)
|++++++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++. ......+++.+||++|++.
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 33445566666667889999999999999999999999999999 99999988875 4445566778999999852
Q ss_pred -------HHHHhcCCCcc-----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913 139 -------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG 203 (275)
Q Consensus 139 -------~~~~~~~~~~~-----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~ 203 (275)
+++.++..... ...+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++
T Consensus 111 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts 190 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190 (279)
T ss_dssp CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 22222211100 0112223455677777776667777777 999999999999999 99999999 899
Q ss_pred CCCccc
Q 023913 204 GDKIPR 209 (275)
Q Consensus 204 g~d~~~ 209 (275)
++|...
T Consensus 191 ~LD~~~ 196 (279)
T 2ihy_A 191 GLDFIA 196 (279)
T ss_dssp TCCHHH
T ss_pred ccCHHH
Confidence 998643
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=2.1e-25 Score=197.18 Aligned_cols=143 Identities=19% Similarity=0.086 Sum_probs=108.5
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI------ 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~------ 138 (275)
+.+++.+.++...+|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++...... .+++.+||+||++.
T Consensus 19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (257)
T 1g6h_A 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98 (257)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSB
T ss_pred CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCc
Confidence 445666666667889999999999999999999999999999 9999998887654433 34567999999852
Q ss_pred --HHHHhcCCC---c-----------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 139 --RAVETGGCP---H-----------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 139 --~~~~~~~~~---~-----------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
+++.++... . .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+|
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 333333221 1 11112223455677888776667777777 999999999999999 99999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 179 EPts~LD~~~ 188 (257)
T 1g6h_A 179 EPIAGVAPGL 188 (257)
T ss_dssp STTTTCCHHH
T ss_pred CCccCCCHHH
Confidence 999999754
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=3.3e-26 Score=198.47 Aligned_cols=143 Identities=18% Similarity=0.065 Sum_probs=106.2
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HH-HhccccCchhH---
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI--- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~-~~ig~v~q~~~--- 138 (275)
+.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+ ++ +.+||+||++.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence 345566666667889999999999999999999999999999 99999988876544332 33 67999999752
Q ss_pred -----HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -----~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 222221100 011112223445677777776667777777 999999999999999 99999999 899998754
No 10
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=1.9e-25 Score=202.21 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=109.1
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ ...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus 57 ~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v 133 (306)
T 3nh6_A 57 ENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133 (306)
T ss_dssp EEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred EEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence 677788876 455666666667889999999999999999999999999999 9999999999887778888999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
||++. +++.++... ... +....+.+ .+..+.. ..+++..+.+ |+||+||++|||||+ +|+|
T Consensus 134 ~Q~~~lf~~Tv~eNi~~~~~~-~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 134 PQDTVLFNDTIADNIRYGRVT-AGN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp CSSCCCCSEEHHHHHHTTSTT-CCH-HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ecCCccCcccHHHHHHhhccc-CCH-HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 99862 344443222 211 11111111 1111111 1133333333 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+||| ||+++|...
T Consensus 212 LlLDEPts~LD~~~ 225 (306)
T 3nh6_A 212 ILLDEATSALDTSN 225 (306)
T ss_dssp EEEECCSSCCCHHH
T ss_pred EEEECCcccCCHHH
Confidence 9999 899998643
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=1.4e-25 Score=206.70 Aligned_cols=145 Identities=22% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhccccCchhH---
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~--- 138 (275)
|++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++... .....++.+||+||++.
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 34556666777777889999999999999999999999999999 9999998876321 11223467999999852
Q ss_pred -----HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -----RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -----~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++..... ...+....+.+.++.+.+....++.+.+ |+||+||++|||||+ +|+++||| |++++|...
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 44444432211 1222334556678888887778888888 999999999999999 99999999 899998653
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.92 E-value=3.9e-25 Score=203.68 Aligned_cols=150 Identities=17% Similarity=0.054 Sum_probs=111.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+.|++ +.+++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ .++.+||+
T Consensus 18 ~~l~~~y~g---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v 92 (355)
T 1z47_A 18 VGVEKIYPG---GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLV 92 (355)
T ss_dssp EEEEECCTT---STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEE
T ss_pred EEEEEEEcC---CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEE
Confidence 444455533 556666777777889999999999999999999999999999 999999888765433 24679999
Q ss_pred CchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 134 PEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
||+.. +++.++... .....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+|+||| |
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99852 233222100 011112223455677888777777888888 999999999999999 99999999 8
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 173 ~s~LD~~~ 180 (355)
T 1z47_A 173 FAAIDTQI 180 (355)
T ss_dssp TCCSSHHH
T ss_pred cccCCHHH
Confidence 99998653
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=6.7e-26 Score=200.39 Aligned_cols=150 Identities=16% Similarity=0.037 Sum_probs=110.0
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+..+.|. ++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.. ....+++.+||+
T Consensus 19 ~~l~~~y~----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v 93 (256)
T 1vpl_A 19 KDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYL 93 (256)
T ss_dssp EEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEE
T ss_pred EEEEEEEC----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEE
Confidence 45555553 345666666667889999999999999999999999999999 999999887754 344566789999
Q ss_pred CchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913 134 PEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V 201 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~ 201 (275)
||++. +++.+.... .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+|+||| |
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99852 222221100 011111123345567777666666777777 999999999999999 99999999 9
Q ss_pred CCCCCccc
Q 023913 202 SGGDKIPR 209 (275)
Q Consensus 202 t~g~d~~~ 209 (275)
++++|...
T Consensus 174 ts~LD~~~ 181 (256)
T 1vpl_A 174 TSGLDVLN 181 (256)
T ss_dssp TTTCCHHH
T ss_pred ccccCHHH
Confidence 99999754
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=4.3e-25 Score=195.79 Aligned_cols=143 Identities=12% Similarity=0.038 Sum_probs=105.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC----------CCh---HHHHHhccc
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KED---GEFLMRNGA 132 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~----------~~~---~~~~~~ig~ 132 (275)
+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ... ..+++.+||
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence 445566666667889999999999999999999999999999 999998887641 222 245678999
Q ss_pred cCchhH--------HHHHhcC--CCccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913 133 LPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYII 199 (275)
Q Consensus 133 v~q~~~--------~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlll 199 (275)
+||++. +++.++. .......+....+.+.++.+..... .++.+.+ |+||+||++|||+|+ +|+|+|+
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 177 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999751 2332211 0011111222344567777776665 6777777 999999999999999 9999999
Q ss_pred e-CCCCCCccc
Q 023913 200 D-VSGGDKIPR 209 (275)
Q Consensus 200 D-~t~g~d~~~ 209 (275)
| |++++|...
T Consensus 178 DEPts~LD~~~ 188 (262)
T 1b0u_A 178 DEPTSALDPEL 188 (262)
T ss_dssp ESTTTTSCHHH
T ss_pred eCCCccCCHHH
Confidence 9 999999754
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=2.6e-25 Score=206.31 Aligned_cols=143 Identities=14% Similarity=-0.000 Sum_probs=109.6
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----- 138 (275)
|++..++.+.++...+|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+. .+.+||+||++.
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTS
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCC
Confidence 33456666777777889999999999999999999999999999 9999999888765443 367999999852
Q ss_pred ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||||+ +|+|+||| |++++|...
T Consensus 91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~ 168 (381)
T 3rlf_A 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (381)
T ss_dssp CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 2222221100 11112224455677888777778888888 999999999999999 99999999 899998653
No 16
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=1.6e-24 Score=193.09 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=106.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++. +...++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus 20 ~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 98 (271)
T 2ixe_A 20 QDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98 (271)
T ss_dssp EEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred EEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence 4555555430 0134555666667889999999999999999999999999999 9999998877654555667789999
Q ss_pred CchhH-------HHHHhcCCCccchHH---HH--HHHHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913 134 PEERI-------RAVETGGCPHAAIRE---DI--SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~---~~--~~~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl 197 (275)
||++. +++.++......... .. ..+.+.++.+ +.....+..+.+ |+||+||++|||+|+ +|+|+
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99852 333333211111011 01 1122334444 333344555666 999999999999999 99999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
||| |++++|...
T Consensus 179 lLDEPts~LD~~~ 191 (271)
T 2ixe_A 179 ILDNATSALDAGN 191 (271)
T ss_dssp EEESTTTTCCHHH
T ss_pred EEECCccCCCHHH
Confidence 999 999998654
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=1.5e-24 Score=200.19 Aligned_cols=141 Identities=13% Similarity=-0.006 Sum_probs=108.0
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||+||+..
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCH
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCH
Confidence 445566666667889999999999999999999999999999 9999999887654432 467999999852
Q ss_pred -HHHHhcCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++....... .+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 3444432211111 11123455678888777777888888 999999999999999 99999999 899998653
No 18
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=1.7e-24 Score=189.88 Aligned_cols=148 Identities=12% Similarity=0.055 Sum_probs=103.3
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++ +..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+|
T Consensus 6 ~l~~~y~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 6 HVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp EEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEEEeCC---CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 34455543 455566666667889999999999999999999999999998 99999988876544344567799999
Q ss_pred chhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcccccc-----------ccccc-ChhHHHHHHHHHHhc-Cc
Q 023913 135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCE-SGGDNLAANFSRELA-DY 194 (275)
Q Consensus 135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d-----------~~~~e-S~G~~q~~~laral~-~~ 194 (275)
|++. +++.++...... . ..+.+.++.+......+ ..+.+ |+||+||++|||+|+ +|
T Consensus 83 q~~~l~~~tv~enl~~~~~~~~~-~---~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 83 QDSAIMAGTIRENLTYGLEGDYT-D---EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp CSSCCCCEEHHHHTTSCTTSCSC-H---HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCccccccHHHHHhhhccCCCC-H---HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 9862 222222111111 1 11223444443322222 22344 999999999999999 99
Q ss_pred eEEEEe-CCCCCCcccc
Q 023913 195 IIYIID-VSGGDKIPRK 210 (275)
Q Consensus 195 ~vlllD-~t~g~d~~~~ 210 (275)
+++|+| |++++|....
T Consensus 159 ~lllLDEPts~LD~~~~ 175 (243)
T 1mv5_A 159 KILMLDEATASLDSESE 175 (243)
T ss_dssp SEEEEECCSCSSCSSSC
T ss_pred CEEEEECCcccCCHHHH
Confidence 999999 9999997653
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.91 E-value=2.8e-24 Score=188.96 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=104.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++ ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus 11 ~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v 88 (247)
T 2ff7_A 11 RNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88 (247)
T ss_dssp EEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEE
Confidence 556677742 1344555666666889999999999999999999999999999 9999999888766666677889999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcc-----------ccccccccc-ChhHHHHHHHHHHhc-C
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-----------FKADLLLCE-SGGDNLAANFSRELA-D 193 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-----------~~~d~~~~e-S~G~~q~~~laral~-~ 193 (275)
||++. +++.++ ..... .+. +.+.++.+... ...+..+.+ |+||+||++|||+|+ +
T Consensus 89 ~Q~~~l~~~tv~enl~~~-~~~~~-~~~---~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 89 LQDNVLLNRSIIDNISLA-NPGMS-VEK---VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp CSSCCCTTSBHHHHHTTT-CTTCC-HHH---HHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred eCCCccccccHHHHHhcc-CCCCC-HHH---HHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99852 233232 11111 111 11222222221 112233344 999999999999999 8
Q ss_pred ceEEEEe-CCCCCCccc
Q 023913 194 YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 194 ~~vlllD-~t~g~d~~~ 209 (275)
|+++||| |++++|...
T Consensus 164 p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 164 PKILIFDEATSALDYES 180 (247)
T ss_dssp CSEEEECCCCSCCCHHH
T ss_pred CCEEEEeCCcccCCHHH
Confidence 9999999 999998754
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=1.1e-24 Score=193.50 Aligned_cols=138 Identities=13% Similarity=0.007 Sum_probs=103.1
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH---------
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------- 138 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ..+++.+||++|++.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---HHHGGGEEEECSSGGGGCCCSSHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---HHhhhhEEEEeccchhhcCCCcHH
Confidence 3555556666789999999999999999999999999999 999998877642 255678999999841
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhcc--ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 RAVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++........+....+.+.++.+... ...++.+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~ 173 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHH
Confidence 333333211111111123345567777766 566777777 999999999999999 99999999 999998643
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=2.7e-25 Score=191.56 Aligned_cols=143 Identities=19% Similarity=0.131 Sum_probs=103.3
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.| ++ +++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++. .+++.++|+
T Consensus 14 ~~ls~~y----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v 83 (214)
T 1sgw_A 14 RDLSVGY----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFL 83 (214)
T ss_dssp EEEEEES----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEE
T ss_pred EEEEEEe----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEE
Confidence 4445555 34 5555666667889999999999999999999999999999 99999887653 245679999
Q ss_pred CchhH--------HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913 134 PEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS 202 (275)
Q Consensus 134 ~q~~~--------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t 202 (275)
||++. +++.++..... .......+.+.++.+..... +..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 84 PEEIIVPRKISVEDYLKAVASLYG-VKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp CSSCCCCTTSBHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred eCCCcCCCCCCHHHHHHHHHHhcC-CchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99752 22222100000 00011233456777766555 666767 999999999999999 99999999 89
Q ss_pred CCCCccc
Q 023913 203 GGDKIPR 209 (275)
Q Consensus 203 ~g~d~~~ 209 (275)
+++|...
T Consensus 162 s~LD~~~ 168 (214)
T 1sgw_A 162 VAIDEDS 168 (214)
T ss_dssp TTSCTTT
T ss_pred cCCCHHH
Confidence 9998754
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.91 E-value=2.4e-24 Score=199.61 Aligned_cols=141 Identities=11% Similarity=-0.071 Sum_probs=106.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||+||+..
T Consensus 23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCH
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCH
Confidence 445566666667889999999999999999999999999999 9999999887654432 467999999863
Q ss_pred -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 176 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 176 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 3333332211 11122224456678888777777888888 999999999999999 99999999 899998653
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=9e-25 Score=200.92 Aligned_cols=138 Identities=17% Similarity=0.067 Sum_probs=104.5
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
+. ++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+ .++.+||+||+..
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCH
Confidence 44 555666667889999999999999999999999999999 999999988765333 3578999999852
Q ss_pred -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... ..... ..+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 90 ~enl~~~~~~~-~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 162 (348)
T 3d31_A 90 KKNLEFGMRMK-KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162 (348)
T ss_dssp HHHHHHHHHHH-CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred HHHHHHHHHHc-CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 2222211000 00001 3345577777777777888888 999999999999999 99999999 899998653
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=1.1e-24 Score=200.88 Aligned_cols=143 Identities=15% Similarity=0.003 Sum_probs=107.7
Q ss_pred CCC--CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhccccCchhH--
Q 023913 67 RRA--PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI-- 138 (275)
Q Consensus 67 ~~~--~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~-- 138 (275)
+.. ++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.... ....++.+||+||+..
T Consensus 15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (353)
T ss_dssp GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccC
Confidence 445 566666667889999999999999999999999999999 99999887764310 1123467999999852
Q ss_pred ------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913 139 ------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP 208 (275)
Q Consensus 139 ------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~ 208 (275)
+++.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+++||| |++++|..
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 3444432211 11122234456678888777777888888 999999999999999 99999999 89999975
Q ss_pred c
Q 023913 209 R 209 (275)
Q Consensus 209 ~ 209 (275)
.
T Consensus 175 ~ 175 (353)
T 1oxx_K 175 M 175 (353)
T ss_dssp G
T ss_pred H
Confidence 4
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=5.7e-25 Score=203.16 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=107.4
Q ss_pred CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------
Q 023913 66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------ 138 (275)
++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+. .+.+||+||+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSC
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCC
Confidence 3455666666667889999999999999999999999999999 9999999887654432 467999999852
Q ss_pred --HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 --~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++... .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (362)
T 2it1_A 92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168 (362)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 233222100 011111223455677888777777888888 999999999999999 99999999 899998643
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=4.5e-24 Score=189.73 Aligned_cols=145 Identities=14% Similarity=-0.001 Sum_probs=102.5
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH--
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-- 138 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-- 138 (275)
|+++.++.+.++...+|++++|+||||||||||+++|+|+ ++|+ |+|.+.+.++.......+ ++.++|++|++.
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 3345566666666788999999999999999999999998 4677 999999887755444444 345899999852
Q ss_pred ------HHHHhc--------CCCccchHHHHHHHHHHHHHhhcc-cccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 139 ------RAVETG--------GCPHAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 139 ------~~~~~~--------~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD 200 (275)
+++.+. +.......+....+.+.++.+... ...++.+. + |+||+||++|||+|+ +|+|+|||
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD 189 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 189 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 222111 111111111123445577777664 34556654 3 999999999999999 99999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 190 EPts~LD~~~ 199 (267)
T 2zu0_C 190 ESDSGLDIDA 199 (267)
T ss_dssp STTTTCCHHH
T ss_pred CCCCCCCHHH
Confidence 999999754
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=7.5e-24 Score=186.49 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=104.7
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH--------HH
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~ 140 (275)
.++.+.++...+|++++|+||||||||||+++|+|+++|+|+|.+.+.++.......+++.+||++|++. ++
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 3455555566789999999999999999999999999877999998877755555667788999999752 33
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-Cce-------EEEEe-CCCCCCccc
Q 023913 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI-------IYIID-VSGGDKIPR 209 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~-------vlllD-~t~g~d~~~ 209 (275)
+.++...... ...+.+.++.+......++.+.+ |+||+||++|||+|+ +|+ ++|+| |++++|...
T Consensus 94 l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~ 168 (249)
T 2qi9_C 94 LTLHQHDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ 168 (249)
T ss_dssp HHTTCSSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHH
T ss_pred HHHhhccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHH
Confidence 3333211111 22344567777766666777777 999999999999999 899 99999 999998654
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=8.8e-24 Score=185.10 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=102.2
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~ 141 (275)
+.+.++...+ ++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..++.+||+||++. +++
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence 5556666688 999999999999999999999999999 99999888775422 23467999999852 333
Q ss_pred HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.++... .........+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 92 AYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HTTCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHH-cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 332211 11111233455677777776666777777 999999999999999 99999999 999999754
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=2.8e-24 Score=199.32 Aligned_cols=141 Identities=11% Similarity=-0.068 Sum_probs=105.3
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC------CChHHHHHhccccCchhH-
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~------~~~~~~~~~ig~v~q~~~- 138 (275)
+..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.. ..+ ..+.+||+||+..
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYAL 92 (372)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCC
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCcc
Confidence 445566666667889999999999999999999999999999 999998877643 222 2467999999852
Q ss_pred -------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 139 -------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 139 -------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
+++.++... .....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+|+||| |++++|.
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 172 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 233222110 011111223455677777777777888888 999999999999999 99999999 8999986
Q ss_pred cc
Q 023913 208 PR 209 (275)
Q Consensus 208 ~~ 209 (275)
..
T Consensus 173 ~~ 174 (372)
T 1g29_1 173 KL 174 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=1.3e-23 Score=185.43 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=96.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------- 138 (275)
++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+ ++.+||+||++.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCEEEECSCCCCSSCCBH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccEEEEcCCCccCCCCCH
Confidence 344555666667889999999999999999999999999999 99871 246889988752
Q ss_pred -HHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 139 -RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 139 -~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
+++.++.... .........+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 3333322111 00112223445677777776666777777 999999999999999 99999999 999998654
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=1.5e-23 Score=184.54 Aligned_cols=143 Identities=15% Similarity=0.020 Sum_probs=98.7
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH----
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI---- 138 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~---- 138 (275)
+..++.+.++...+|++++|+||||||||||+++|+|+ ++|+ |+|.+.+.++.......+. +.++|++|++.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (250)
T 2d2e_A 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94 (250)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS
T ss_pred CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC
Confidence 34455566666788999999999999999999999998 7788 9999999887665544443 35899999752
Q ss_pred ----HHHHhcCC----CccchHHHHHHHHHHHHHhhc-cccccccccc--ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913 139 ----RAVETGGC----PHAAIREDISINLGPLEELSN-LFKADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGD 205 (275)
Q Consensus 139 ----~~~~~~~~----~~~~~~~~~~~~~~~L~~l~~-~~~~d~~~~e--S~G~~q~~~laral~-~~~vlllD-~t~g~ 205 (275)
+++.+... ......+....+.+.++.+.. ....++.+.+ |+||+||++|||+|+ +|+++|+| |++++
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 174 (250)
T 2d2e_A 95 VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174 (250)
T ss_dssp CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 22221100 000111112334456777766 3445555554 999999999999999 99999999 89999
Q ss_pred Cccc
Q 023913 206 KIPR 209 (275)
Q Consensus 206 d~~~ 209 (275)
|...
T Consensus 175 D~~~ 178 (250)
T 2d2e_A 175 DIDA 178 (250)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8654
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.89 E-value=3.5e-23 Score=183.31 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=101.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
.++.+.|++.. ...++.+.++...+|++++|+||||||||||+++|+|+++|.|+|.+.+.++.......+++.++|+|
T Consensus 21 ~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 99 (260)
T 2ghi_A 21 SDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVP 99 (260)
T ss_dssp EEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEEC
T ss_pred EEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEc
Confidence 45556664410 12355555666678999999999999999999999999986799999888775555556777899999
Q ss_pred chhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhc-------cccc----cccccc-ChhHHHHHHHHHHhc-Cc
Q 023913 135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSN-------LFKA----DLLLCE-SGGDNLAANFSRELA-DY 194 (275)
Q Consensus 135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-------~~~~----d~~~~e-S~G~~q~~~laral~-~~ 194 (275)
|++. +++.++. .... .+.. .+.++.+.. .... +..+.+ |+||+||++|||+|+ +|
T Consensus 100 Q~~~l~~~tv~enl~~~~-~~~~-~~~~---~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 100 QDTILFNETIKYNILYGK-LDAT-DEEV---IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp SSCCCCSEEHHHHHHTTC-TTCC-HHHH---HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCcccccCHHHHHhccC-CCCC-HHHH---HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 9862 3333332 1111 1111 112222111 1111 223344 999999999999999 99
Q ss_pred eEEEEe-CCCCCCccc
Q 023913 195 IIYIID-VSGGDKIPR 209 (275)
Q Consensus 195 ~vlllD-~t~g~d~~~ 209 (275)
+|+|+| |++++|...
T Consensus 175 ~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKT 190 (260)
T ss_dssp SEEEEECCCCTTCHHH
T ss_pred CEEEEECccccCCHHH
Confidence 999999 999998654
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.4e-23 Score=193.08 Aligned_cols=145 Identities=13% Similarity=0.053 Sum_probs=104.7
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++ ++..++.+.++...+|++++|+|||||||||||++|+|+++ + |+|.+.+.++.......+++.+||+
T Consensus 23 ~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 23 KDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence 556666753 14456666666778899999999999999999999999988 6 9999999998877777788899999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccc------------cChhHHHHHHHHHHhc-C
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLC------------ESGGDNLAANFSRELA-D 193 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~------------eS~G~~q~~~laral~-~ 193 (275)
||++. +++..... ... ..+.+.++.+.+....++.+. -|+||+||++|||||+ +
T Consensus 100 ~Q~~~lf~~tv~enl~~~~~---~~~---~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 100 PQKVFIFSGTFRKNLDPNAA---HSD---QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp SCCCCCCSEEHHHHHCTTCC---SCH---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCcccCccCHHHHhhhccc---cCH---HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 99862 22211111 111 122334444443332222222 1999999999999999 9
Q ss_pred ceEEEEe-CCCCCCcc
Q 023913 194 YIIYIID-VSGGDKIP 208 (275)
Q Consensus 194 ~~vlllD-~t~g~d~~ 208 (275)
|+|+||| |++++|..
T Consensus 174 P~lLLLDEPts~LD~~ 189 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPV 189 (390)
T ss_dssp CCEEEEESHHHHSCHH
T ss_pred CCEEEEeCCccCCCHH
Confidence 9999999 88888853
No 34
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.88 E-value=1.5e-22 Score=213.79 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=115.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.||+. ++.+++.+.++..++|+.++|+|++|||||||+++|.++++|+ |+|.++|.|+.+.+...++++++||
T Consensus 1080 ~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1080 KNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 7888999861 0123445555566789999999999999999999999999998 9999999999999999999999999
Q ss_pred CchhH-------HHHHhcCCC-ccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 134 PEERI-------RAVETGGCP-HAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~-~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
||++. +|+.++..+ ..+. +++..+.+ .+.++. ...++|..+.| |+|||||++|||||+ +|+
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd-~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTM-AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCH-HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCH-HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC
Confidence 99983 444444333 2222 22221111 222321 24578888887 999999999999999 999
Q ss_pred EEEEe-CCCCCCcc
Q 023913 196 IYIID-VSGGDKIP 208 (275)
Q Consensus 196 vlllD-~t~g~d~~ 208 (275)
|+||| ||+.+|..
T Consensus 1238 ILiLDEaTSaLD~~ 1251 (1321)
T 4f4c_A 1238 ILLLDEATSALDTE 1251 (1321)
T ss_dssp EEEEESCCCSTTSH
T ss_pred EEEEeCccccCCHH
Confidence 99999 88888854
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=177.45 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=92.1
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++ .+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+ .++|+|
T Consensus 8 ~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~ 72 (237)
T 2cbz_A 8 NATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVP 72 (237)
T ss_dssp EEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEEC
T ss_pred EEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEc
Confidence 34455542 0244555666667889999999999999999999999999998 9998865 378888
Q ss_pred chhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhccc-----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913 135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID 200 (275)
Q Consensus 135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD 200 (275)
|++. +++.++.................++.+.... ..+..+.+ |+||+||++|||+|+ +|+|+|+|
T Consensus 73 Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 73 QQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp SSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8752 3333322111111111111111122221111 12344555 999999999999999 99999999
Q ss_pred -CCCCCCccc
Q 023913 201 -VSGGDKIPR 209 (275)
Q Consensus 201 -~t~g~d~~~ 209 (275)
|++++|...
T Consensus 153 EPts~LD~~~ 162 (237)
T 2cbz_A 153 DPLSAVDAHV 162 (237)
T ss_dssp STTTTSCHHH
T ss_pred CcccccCHHH
Confidence 899998753
No 36
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1.7e-22 Score=197.76 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=108.0
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +...++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..+++++++|+
T Consensus 345 ~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 422 (587)
T 3qf4_A 345 ENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422 (587)
T ss_dssp EEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred EEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEE
Confidence 677788875 1234555555666789999999999999999999999999999 9999999999877778888999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
||++. +++.++ .+.....+.... ....+.++. ...+++..+.+ |+||+||++|||||+ +|+|+
T Consensus 423 ~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 423 PQETVLFSGTIKENLKWG-REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp CSSCCCCSEEHHHHHTTT-CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCCCcCcCccHHHHHhcc-CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 99862 333333 222222111110 011111111 12234444433 999999999999999 99999
Q ss_pred EEe-CCCCCCcc
Q 023913 198 IID-VSGGDKIP 208 (275)
Q Consensus 198 llD-~t~g~d~~ 208 (275)
|+| ||+++|..
T Consensus 502 llDEpts~LD~~ 513 (587)
T 3qf4_A 502 ILDDCTSSVDPI 513 (587)
T ss_dssp EEESCCTTSCHH
T ss_pred EEECCcccCCHH
Confidence 999 89998864
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.4e-23 Score=186.25 Aligned_cols=134 Identities=22% Similarity=0.079 Sum_probs=97.9
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcc-ccCchhH------H
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI------R 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~------~ 139 (275)
+.++.+.++... |++++|+|||||||||||++|+|++ |+ |+|.+.+.++... .. ++.++ |+||++. +
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~e 92 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVND 92 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHH
Confidence 345556666667 9999999999999999999999999 98 9999988766432 12 56799 9999852 1
Q ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+..... ......+.+.++.+... ...++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 93 nl~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 163 (263)
T 2pjz_A 93 IVYLYEELK---GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163 (263)
T ss_dssp HHHHHHHHT---CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHH
T ss_pred HHHHhhhhc---chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHH
Confidence 111110000 00112334566777665 556677777 999999999999999 99999999 999998654
No 38
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2e-22 Score=197.62 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=109.2
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++ +..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..+++++++|+
T Consensus 358 ~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 434 (598)
T 3qf4_B 358 KNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV 434 (598)
T ss_dssp EEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence 667777765 455666666677889999999999999999999999999999 9999999998887778888999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~v 196 (275)
||++. +++.++ .+..+.. ....+.+ .+..+.. ..+++..+.| |+||+||++||||++ +|++
T Consensus 435 ~Q~~~lf~~tv~eni~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 435 LQDTILFSTTVKENLKYG-NPGATDE-EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp CTTCCCCSSBHHHHHHSS-STTCCTT-HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred eCCCccccccHHHHHhcC-CCCCCHH-HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99862 344333 2222111 1111111 1111111 1234444443 999999999999999 9999
Q ss_pred EEEe-CCCCCCccc
Q 023913 197 YIID-VSGGDKIPR 209 (275)
Q Consensus 197 lllD-~t~g~d~~~ 209 (275)
+|+| ||+++|...
T Consensus 513 lllDEpts~LD~~~ 526 (598)
T 3qf4_B 513 LILDEATSNVDTKT 526 (598)
T ss_dssp EEECCCCTTCCHHH
T ss_pred EEEECCccCCCHHH
Confidence 9999 899998643
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.87 E-value=2.1e-22 Score=196.71 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=108.5
Q ss_pred ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.|.|++ .. .++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.+||
T Consensus 343 ~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 419 (578)
T 4a82_A 343 DHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419 (578)
T ss_dssp EEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred EEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 677788876 44 4555555666789999999999999999999999999999 999999999887777888899999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +++.++ .+..... ......+ .+.++. ...+++..+.| |+||+||+++||+++ +|+
T Consensus 420 v~Q~~~l~~~tv~eni~~~-~~~~~~~-~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 420 VQQDNILFSDTVKENILLG-RPTATDE-EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp ECSSCCCCSSBHHHHHGGG-CSSCCHH-HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EeCCCccCcccHHHHHhcC-CCCCCHH-HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 999862 344333 2222211 1111110 111111 12234444443 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
++|+| |++++|...
T Consensus 498 illlDEpts~LD~~~ 512 (578)
T 4a82_A 498 ILILDEATSALDLES 512 (578)
T ss_dssp EEEEESTTTTCCHHH
T ss_pred EEEEECccccCCHHH
Confidence 99999 899998643
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=2.7e-22 Score=196.05 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=108.4
Q ss_pred ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.+.|++ + ..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.++|
T Consensus 345 ~~v~~~y~~---~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b60_A 345 RNVTFTYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421 (582)
T ss_dssp EEEEECSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEcCC---CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence 667777764 3 44555666667889999999999999999999999999999 999999999877777778889999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +++.++..+.... +....+.+ .+.++.. ..+++..+.+ |+||+||++|||+++ +|+
T Consensus 422 v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 422 VSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp ECSSCCCCSSBHHHHHHTTTTSCCCH-HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EccCCcCCCCCHHHHHhccCCCCCCH-HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 999862 4444433122221 11111111 1111111 1233444433 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
++|+| |++++|...
T Consensus 501 illlDEpts~LD~~~ 515 (582)
T 3b60_A 501 ILILDEATSALDTES 515 (582)
T ss_dssp EEEEETTTSSCCHHH
T ss_pred EEEEECccccCCHHH
Confidence 99999 899998654
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.87 E-value=3.5e-22 Score=173.65 Aligned_cols=136 Identities=16% Similarity=0.077 Sum_probs=89.7
Q ss_pred cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913 56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP 134 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~ 134 (275)
++.+.|++ ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+ .++|+|
T Consensus 11 ~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~ 75 (229)
T 2pze_A 11 NVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 75 (229)
T ss_dssp EEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEEC
T ss_pred EEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEe
Confidence 44555542 1344555666667889999999999999999999999999999 9998865 378888
Q ss_pred chhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhcc--c----cccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913 135 EERI-------RAVETGGCPHAAIREDISINLG--PLEELSNL--F----KADLLLCE-SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~~--~----~~d~~~~e-S~G~~q~~~laral~-~~~vl 197 (275)
|++. +++.++.. ... .......+ .+..+... . ..+..+.+ |+||+||++|||+|+ +|+++
T Consensus 76 q~~~~~~~tv~enl~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 76 QFSWIMPGTIKENIIFGVS-YDE--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp SSCCCCSBCHHHHHHTTSC-CCH--HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cCCcccCCCHHHHhhccCC-cCh--HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 8752 33333211 110 00111000 11111110 0 11122344 999999999999999 89999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
|+| |++++|...
T Consensus 153 lLDEPts~LD~~~ 165 (229)
T 2pze_A 153 LLDSPFGYLDVLT 165 (229)
T ss_dssp EEESTTTTSCHHH
T ss_pred EEECcccCCCHHH
Confidence 999 999999754
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=2.9e-22 Score=195.88 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=107.5
Q ss_pred ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913 55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~ 132 (275)
.++.+.|++ + ..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.+||
T Consensus 345 ~~v~~~y~~---~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 345 KDVTFTYQG---KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 667777765 3 44555666667889999999999999999999999999998 999999998877666778888999
Q ss_pred cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+||++. +++.++..+... .+....+.+ .+.++.. ..+++..+.+ |+||+||++|||+|+ +|+
T Consensus 422 v~Q~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ 500 (582)
T 3b5x_A 422 VSQNVHLFNDTIANNIAYAAEGEYT-REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500 (582)
T ss_pred EcCCCccccccHHHHHhccCCCCCC-HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 999873 333333212222 111111111 1122211 1233443433 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
++|+| |++++|...
T Consensus 501 illlDEpts~LD~~~ 515 (582)
T 3b5x_A 501 VLILDEATSALDTES 515 (582)
T ss_pred EEEEECccccCCHHH
Confidence 99999 899998754
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=1.1e-21 Score=207.07 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=116.4
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.||+. ++..++.+.++..++|+.++|+||+|||||||+++|+|+++|+ |+|.++|.++.+.+...++++++||
T Consensus 419 ~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 419 ENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp EEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence 7888999861 1223445555566789999999999999999999999999999 9999999999999999999999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHh--hccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY 197 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l--~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl 197 (275)
+|++. +|+.++ .+..+..+-... ....+.++ ....+++..++| ||||+||++||||+. +|+|+
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g-~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Il 576 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKIL 576 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCcceeeCCchhHHHhhh-cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEE
Confidence 99983 444444 444433221111 11112222 124577888887 999999999999999 99999
Q ss_pred EEe-CCCCCCccc
Q 023913 198 IID-VSGGDKIPR 209 (275)
Q Consensus 198 llD-~t~g~d~~~ 209 (275)
||| |++.+|...
T Consensus 577 iLDE~tSaLD~~t 589 (1321)
T 4f4c_A 577 LLDEATSALDAES 589 (1321)
T ss_dssp EEESTTTTSCTTT
T ss_pred EEecccccCCHHH
Confidence 999 888888643
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.86 E-value=6.7e-22 Score=193.76 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=107.6
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.+.|++.- +..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.++|+
T Consensus 345 ~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 423 (595)
T 2yl4_A 345 KNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423 (595)
T ss_dssp EEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEE
T ss_pred EEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEE
Confidence 56677776510 123455555666789999999999999999999999999999 9999999998777777788889999
Q ss_pred CchhH-------HHHHhcCCCc--cchHHHHHHHHHHHHHhhc-------ccccccccc----c-ChhHHHHHHHHHHhc
Q 023913 134 PEERI-------RAVETGGCPH--AAIREDISINLGPLEELSN-------LFKADLLLC----E-SGGDNLAANFSRELA 192 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~-------~~~~d~~~~----e-S~G~~q~~~laral~ 192 (275)
||++. +++.++.... .. .+.. .+.++.+.. ..+++..+. + |+||+||++|||+|+
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~~~~~-~~~~---~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDPSSVT-AEEI---QRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSSTTTSC-HHHH---HHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCHHHHHhhcCCCccccC-HHHH---HHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 99862 3444432210 11 1112 222222211 223455553 3 999999999999999
Q ss_pred -CceEEEEe-CCCCCCccc
Q 023913 193 -DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 193 -~~~vlllD-~t~g~d~~~ 209 (275)
+|+++|+| |++++|...
T Consensus 500 ~~p~illlDEpts~LD~~~ 518 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAEN 518 (595)
T ss_dssp HCCSEEEEECCCSSCCHHH
T ss_pred cCCCEEEEECcccCCCHHH
Confidence 99999999 899998654
No 45
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.82 E-value=2.7e-21 Score=177.19 Aligned_cols=201 Identities=17% Similarity=0.104 Sum_probs=129.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHHHHhccccCchhHHHHHh
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRAVET 143 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~~~~ 143 (275)
.++.+.++...+|++++|+|+||||||||+++|+|++.|+ |+|.+.+.++..... ...++++++++|++..++.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~- 121 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR- 121 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE-
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc-
Confidence 3344444556779999999999999999999999999987 999999998854321 1234678999987532211
Q ss_pred cCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEE
Q 023913 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI 223 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivl 223 (275)
....+|.+......+.+.+..+ .....+.+++|+.|..+........++..++++|+..+++.+.........++++++
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl 200 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV 200 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred cCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE
Confidence 1122444444333333344222 345689999999998765433334447788889987665432222223467899999
Q ss_pred ecCCCCccch---hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhcccc
Q 023913 224 NKTDLASAIG---ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 224 NK~Dl~~~~~---~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
||+|+..... ...+.+...+..++| ..+++++|+++++|+++|++.+.
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 9999865311 123334444444453 46899999999999999987653
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=2.1e-20 Score=196.87 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=109.9
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++. .+..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.+||+
T Consensus 391 ~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 469 (1284)
T 3g5u_A 391 KNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469 (1284)
T ss_dssp EEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEE
Confidence 6778888761 0123555566666889999999999999999999999999999 9999999999888888899999999
Q ss_pred CchhH-------HHHHhcCCCccchHHHHHH-----HHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 134 PEERI-------RAVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-----~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
+|++. +++.++.. ..+..+.... ..+.+..+ ..+++..+.| |+||+||++|||||+ +|+
T Consensus 470 ~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 470 SQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp CSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred cCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhc--cccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 99972 44444432 2222111110 11122222 2344555544 999999999999999 999
Q ss_pred EEEEe-CCCCCCcc
Q 023913 196 IYIID-VSGGDKIP 208 (275)
Q Consensus 196 vlllD-~t~g~d~~ 208 (275)
|+||| ||+.+|..
T Consensus 547 iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 547 ILLLDEATSALDTE 560 (1284)
T ss_dssp EEEEESTTCSSCHH
T ss_pred EEEEECCCCCCCHH
Confidence 99999 88898864
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.82 E-value=1.6e-20 Score=168.64 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=83.1
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (275)
..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+ .++|+||++. +
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHH
Confidence 44555666667889999999999999999999999999998 9998754 3788888752 2
Q ss_pred HHHhcCCCccchH-HHHHHH---HHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 140 AVETGGCPHAAIR-EDISIN---LGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~~~---~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
++. +....... ...... .+.+..+.... ..+..+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus 118 nl~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (290)
T 2bbs_A 118 NII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194 (290)
T ss_dssp HHH--TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred Hhh--CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHH
Confidence 332 22111000 000000 01111111000 11112344 999999999999999 89999999 899998643
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=2.4e-20 Score=196.52 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=110.8
Q ss_pred ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.++.|.|++. ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...++++++|+
T Consensus 1034 ~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1034 SGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp EEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred EEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence 6777888761 0124555666667889999999999999999999999999999 9999999999888888888899999
Q ss_pred CchhH-------HHHHhcCCC-ccchHHHHHHHH--HHHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913 134 PEERI-------RAVETGGCP-HAAIREDISINL--GPLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI 195 (275)
Q Consensus 134 ~q~~~-------~~~~~~~~~-~~~~~~~~~~~~--~~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~ 195 (275)
||++. +++.++... ..+. +...... ..+.++.. ..+++..+.| |+||+||++|||+|+ +|+
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~-~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~ 1191 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSRVVSY-EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSCCCCH-HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred CCCCccccccHHHHHhccCCCCCCCH-HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCC
Confidence 99972 333333221 1221 1111111 11222212 2355666655 999999999999999 999
Q ss_pred EEEEe-CCCCCCccc
Q 023913 196 IYIID-VSGGDKIPR 209 (275)
Q Consensus 196 vlllD-~t~g~d~~~ 209 (275)
|+||| ||+++|...
T Consensus 1192 iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1192 ILLLDEATSALDTES 1206 (1284)
T ss_dssp SEEEESCSSSCCHHH
T ss_pred EEEEeCCcccCCHHH
Confidence 99999 899998643
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=1.4e-19 Score=175.33 Aligned_cols=134 Identities=18% Similarity=0.093 Sum_probs=88.6
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE---------EEeccCCCCChHHHH---HhccccCch
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA---------AVTNDIFTKEDGEFL---MRNGALPEE 136 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~---------i~~~d~~~~~~~~~~---~~ig~v~q~ 136 (275)
++.+.+ ...+|++++|+||||||||||+|+|+|+++|+ |++. +.+.++... ..... ..+++++|.
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY-FEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH-HHHHHTTSCCCEEECSC
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH-HHHHHHHhhhhhhhhhh
Confidence 455555 56789999999999999999999999999998 8831 111111000 00111 135566665
Q ss_pred hHHHHHhcCCCccchHHHH------HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913 137 RIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI 207 (275)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~------~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~ 207 (275)
........ . .+..+.+ ..+.+.|+.++.....++.+.+ |+||+||++||++|+ +|+|+||| ||+++|.
T Consensus 115 ~~~~~~~~--~-~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~ 191 (538)
T 1yqt_A 115 VDLIPKAV--K-GKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191 (538)
T ss_dssp GGGSGGGC--C-SBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred hhhcchhh--h-ccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 32111100 0 0111111 1234567777776667778888 999999999999999 99999999 9999986
Q ss_pred c
Q 023913 208 P 208 (275)
Q Consensus 208 ~ 208 (275)
.
T Consensus 192 ~ 192 (538)
T 1yqt_A 192 R 192 (538)
T ss_dssp H
T ss_pred H
Confidence 5
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=1.1e-19 Score=178.33 Aligned_cols=119 Identities=20% Similarity=0.147 Sum_probs=86.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc-h----
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA-I---- 151 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~-~---- 151 (275)
..+|++++|+|||||||||||++|+|+++|+ |+|.+ ...+||+||++......+...... .
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK 445 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccC
Confidence 4679999999999999999999999999998 98864 135889998742100000000000 0
Q ss_pred HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 152 REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 152 ~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
......+.+.++.+......++.+.+ |+||+||++|||+|+ +|.|+||| ||+++|...
T Consensus 446 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 446 LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 00112234567777766667777777 999999999999999 89999999 999998653
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.8e-19 Score=172.50 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=89.0
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hcccc--------
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGAL-------- 133 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v-------- 133 (275)
+|+.....+.......+|++++|+||||||||||||+|+|+++|+ |+|.. . .. ...... -.|..
T Consensus 86 ~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~---~-~~--~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 86 RYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDD---P-PE--WQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp ECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCC---S-SC--HHHHHHHTTTSTHHHHHHHH
T ss_pred EECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEec---c-cc--hhhhhheecChhhhhhhhHH
Confidence 454454555555667789999999999999999999999999998 98621 0 00 011100 01111
Q ss_pred ----------CchhHHHHHhcCCCccchHH--------HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-C
Q 023913 134 ----------PEERIRAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D 193 (275)
Q Consensus 134 ----------~q~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~ 193 (275)
+|...........+.....+ ....+.+.++.+......++.+.+ |+||+||++||++|+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence 11100000000000001110 112345577777777777888888 999999999999999 8
Q ss_pred ceEEEEe-CCCCCCccc
Q 023913 194 YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 194 ~~vlllD-~t~g~d~~~ 209 (275)
|+|+||| |++++|...
T Consensus 240 p~llllDEPts~LD~~~ 256 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQ 256 (608)
T ss_dssp CSEEEEECTTTTCCHHH
T ss_pred CCEEEEECcccCCCHHH
Confidence 9999999 999998643
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.76 E-value=3.4e-19 Score=174.74 Aligned_cols=141 Identities=21% Similarity=0.140 Sum_probs=91.5
Q ss_pred CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE---------EEeccCCCCChHHHH---Hh
Q 023913 64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA---------AVTNDIFTKEDGEFL---MR 129 (275)
Q Consensus 64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~---------i~~~d~~~~~~~~~~---~~ 129 (275)
+|+... ++.+.+ ...+|++++|+|||||||||||++|+|+++|+ |++. +.+.++... ..... ..
T Consensus 100 ~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~ 177 (607)
T 3bk7_A 100 RYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY-FERLKNGEIR 177 (607)
T ss_dssp ECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHH-HHHHHHTSCC
T ss_pred EECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhh-hhhhhhhhcc
Confidence 444443 444544 56789999999999999999999999999998 8841 111111000 00111 13
Q ss_pred ccccCchhHHHHHhcCCCccchHHHH------HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913 130 NGALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID- 200 (275)
Q Consensus 130 ig~v~q~~~~~~~~~~~~~~~~~~~~------~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD- 200 (275)
+++++|........ .. .+..+.+ ..+.+.|+.++.....++.+.+ |+||+||++|||+|+ +|+|+|||
T Consensus 178 i~~~~q~~~~~~~~--~~-~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDE 254 (607)
T 3bk7_A 178 PVVKPQYVDLLPKA--VK-GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 254 (607)
T ss_dssp CEEECSCGGGGGGT--CC-SBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred eEEeechhhhchhh--cc-ccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 55666643211110 00 0121111 1234567777776677888888 999999999999999 99999999
Q ss_pred CCCCCCccc
Q 023913 201 VSGGDKIPR 209 (275)
Q Consensus 201 ~t~g~d~~~ 209 (275)
||+++|...
T Consensus 255 PTs~LD~~~ 263 (607)
T 3bk7_A 255 PSSYLDIRQ 263 (607)
T ss_dssp TTTTCCHHH
T ss_pred CcccCCHHH
Confidence 999999653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=1.4e-19 Score=175.27 Aligned_cols=113 Identities=21% Similarity=0.172 Sum_probs=84.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH--
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED-- 154 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~-- 154 (275)
..+|++++|+||||||||||+++|+|+++|+ |+|.+ ...++|+||++... ...+..+.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~------~~~tv~~~~~ 369 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKAD------YEGTVYELLS 369 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCC------CSSBHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCC------CCCcHHHHHH
Confidence 4679999999999999999999999999998 98864 12588999875210 11111110
Q ss_pred ---------HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 155 ---------ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 155 ---------~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
...+.+.++.+......++.+.+ |+||+||++|||+|+ +|.|+||| ||+++|...
T Consensus 370 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 370 KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred hhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 11233455556555556777777 999999999999999 89999999 999999754
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.75 E-value=1.4e-18 Score=168.29 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=85.1
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCC
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP 147 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~ 147 (275)
...+|++++|+||||||||||+++|+|+++|+ |+|.+.+ +.++|++|+.. +++......
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 357 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENASKD 357 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHCSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhhhh
Confidence 35679999999999999999999999999998 9987532 23566666431 122211111
Q ss_pred ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.... ......+.++.+......++.+.+ |+||+||++|||+|+ +|+|+||| ||+++|...
T Consensus 358 ~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 358 ALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp TTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred ccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 1000 011223455666666667777777 999999999999999 89999999 999999753
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.74 E-value=1.5e-18 Score=167.93 Aligned_cols=128 Identities=15% Similarity=0.031 Sum_probs=82.3
Q ss_pred cccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-----------EEeccCCCCChHHHHHh------ccccCc
Q 023913 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMR------NGALPE 135 (275)
Q Consensus 74 ~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-----------i~~~d~~~~~~~~~~~~------ig~v~q 135 (275)
+-....+|++++|+||||||||||+|+|+|+++|+ |++. +.+.++........... +.++.+
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEY 97 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTG
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhh
Confidence 34455679999999999999999999999999998 8762 11211110000000001 111111
Q ss_pred hhHHHHHhcCCCccchHHHH------HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913 136 ERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~------~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d 206 (275)
.+ .....+..+.+ ..+.+.++.+......++.+.+ |+||+||++||++|+ +|+|+||| ||+++|
T Consensus 98 ~~-------~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD 170 (538)
T 3ozx_A 98 AS-------KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170 (538)
T ss_dssp GG-------TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred hh-------hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 10 00001111111 1234466777777777888888 999999999999999 89999999 899998
Q ss_pred cc
Q 023913 207 IP 208 (275)
Q Consensus 207 ~~ 208 (275)
..
T Consensus 171 ~~ 172 (538)
T 3ozx_A 171 VR 172 (538)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.9e-18 Score=164.58 Aligned_cols=113 Identities=19% Similarity=0.081 Sum_probs=80.3
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCCccch
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAAI 151 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~~~~~ 151 (275)
|++++|+||||||||||+++|+|+++|+ |+. +. ...++|+||+.. +++.........
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~- 443 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL- 443 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCSBHHHHHHHHCSSTTT-
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCccHHHHHHHHhhcccc-
Confidence 4899999999999999999999999998 852 11 124667766521 111111100000
Q ss_pred HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 152 REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 152 ~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
......+.++.+......+..+.+ |+||+||++|||+|+ +|+|+||| ||+++|...
T Consensus 444 --~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~ 502 (608)
T 3j16_B 444 --NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502 (608)
T ss_dssp --SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHH
T ss_pred --cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence 112233467777766677777888 999999999999999 89999999 999999643
No 57
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=154.13 Aligned_cols=182 Identities=20% Similarity=0.211 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh------------cCC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET------------GGC 146 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~------------~~~ 146 (275)
++.+++|+|++|||||||+|.|++.+.++ +++.+.+.|+..... .|.+.++...+..+ ++|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~------~g~~l~d~~rm~~~~~~~~~~v~~~~~~~ 146 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTS------GGSLLGDKTRMTELSRDMNAYIRPSPTRG 146 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------------CCSTTCTTEEEECC----
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCc------CcchhchHHHHHHhcCCCCEEEEecCCcc
Confidence 48899999999999999999999998887 999999999875421 11111111111111 122
Q ss_pred CccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecC
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKT 226 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~ 226 (275)
.++....+. .+.+..+ .....+.+++|+.|..+...-....++..++++|++.+.+.+......+..++++|+||+
T Consensus 147 ~lgg~tr~~---~~~~~~~-~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~ 222 (349)
T 2www_A 147 TLGGVTRTT---NEAILLC-EGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKS 222 (349)
T ss_dssp -----CTTH---HHHHHHH-HHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCC
T ss_pred ccccchHHH---HHHHHhh-ccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeee
Confidence 222111111 1122222 234678899998886544322233347788999988775433222233567899999999
Q ss_pred CCCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhcccc
Q 023913 227 DLASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 227 Dl~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
|+.+... ...+.+...++.++| ..+++++|+++++|+++|++.+.
T Consensus 223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~ 274 (349)
T 2www_A 223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMK 274 (349)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHH
Confidence 9975411 123344444444444 46799999999999999988653
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=3.3e-17 Score=167.02 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=45.6
Q ss_pred ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913 55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (275)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~ 115 (275)
.+..+.|++ . +.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+
T Consensus 675 ~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 675 TNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred EeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 444555554 3 34455555666889999999999999999999999999999 9998753
No 59
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.68 E-value=3.4e-19 Score=158.48 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=81.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH--------hcCCCccchHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE--------TGGCPHAAIRE 153 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~--------~~~~~~~~~~~ 153 (275)
.++|+||||||||||+|+|+|++.|+ |++.+.+.++... ..++.++|++|+...... ++...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCT--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccH--H
Confidence 68999999999999999999999998 9999888766432 224568999997532111 11111100 0
Q ss_pred HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEeCC-CCCCccccc-cccc--cccCEEEEecCCC
Q 023913 154 DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVS-GGDKIPRKG-GPGI--TQADLLVINKTDL 228 (275)
Q Consensus 154 ~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD~t-~g~d~~~~~-~~~i--~~adiivlNK~Dl 228 (275)
... .+..+......++...+ |+||+||+.+||+++ .++++||+ .+++..... ...+ ..+-++|++|+|.
T Consensus 79 ~~~----~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~--~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 79 CWE----PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHC--CLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADT 152 (270)
T ss_dssp CSH----HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCE--EEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGG
T ss_pred HHH----HHHHHHHHHHHhhhHHhcCcccchhhhhheeee--eeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecccc
Confidence 001 11111111122333344 999999999998865 48999954 777754321 1111 1456788999999
Q ss_pred CccchhhHHHHHHHHH
Q 023913 229 ASAIGADLAVMERDAL 244 (275)
Q Consensus 229 ~~~~~~~~~~~~~~i~ 244 (275)
++. .++..+.+.++
T Consensus 153 lt~--~e~~~~k~~i~ 166 (270)
T 3sop_A 153 MTL--EEKSEFKQRVR 166 (270)
T ss_dssp SCH--HHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHH
Confidence 987 55555554444
No 60
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.68 E-value=4.2e-18 Score=153.76 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=106.4
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHH--HHhccccCchhHHHHHhcCCCccc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGGCPHAA 150 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~~~~~~~~~~~ 150 (275)
..+|++++|+||||||||||++.|+|+++|+ |+|.+.+.|...... ..+ +..++|++|++. ...+..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-----~~~~~~~ 171 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-----KAKAATV 171 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-------CCCHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-----ccCHHHH
Confidence 4679999999999999999999999999988 999999988654211 122 246899998642 0011111
Q ss_pred hHHHHHHHH------HHHHHhhccccccccccc-ChhHHHHHHHHHHhc-Cce--EEEEeCCCCCCcccccccccc---c
Q 023913 151 IREDISINL------GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDKIPRKGGPGIT---Q 217 (275)
Q Consensus 151 ~~~~~~~~~------~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~--vlllD~t~g~d~~~~~~~~i~---~ 217 (275)
..+.+.... ..++.++.....+..+.| | +||+.+||+++ +|. ++++||++++|...... .+. .
T Consensus 172 v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~-~~~~~~g 247 (302)
T 3b9q_A 172 LSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR-EFNEVVG 247 (302)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHH-HHHHhcC
Confidence 111111100 011111111111222223 4 78999999998 798 99999999998754331 221 2
Q ss_pred cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
..+|+++|.|.....+..+ ..+... +.||.++. .|+.++++..
T Consensus 248 ~t~iiiThlD~~~~~g~~l----~~~~~~--~~pi~~i~--~Ge~~~dl~~ 290 (302)
T 3b9q_A 248 ITGLILTKLDGSARGGCVV----SVVEEL--GIPVKFIG--VGEAVEDLQP 290 (302)
T ss_dssp CCEEEEECCSSCSCTHHHH----HHHHHH--CCCEEEEE--CSSSGGGEEE
T ss_pred CCEEEEeCCCCCCccChhe----ehHHHH--CCCEEEEe--CCCChhhccc
Confidence 4689999998765533333 222333 46788776 4766665543
No 61
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=6.8e-16 Score=142.02 Aligned_cols=182 Identities=17% Similarity=0.164 Sum_probs=112.4
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh------------cC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET------------GG 145 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~------------~~ 145 (275)
.+..+++|+|++|+|||||++.|+..+... .++.++..|+..... .|.+.++...+... ++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~------~g~~l~d~~~~~~~~~~~~~~i~~~~~~ 150 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRT------GGSILGDKTRMARLAVHPNAYIRPSPTS 150 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------------CHHHHTCTTEEEECCC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcc------cchhccchhhHHhhccCCCeeEEECCCC
Confidence 456799999999999999999999887655 689999888765321 11111111111111 12
Q ss_pred CCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEec
Q 023913 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINK 225 (275)
Q Consensus 146 ~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK 225 (275)
+.++... ....+.+..+ .....+.+++++.|..+........++..|+++|+..++..+......++.++++|+||
T Consensus 151 ~~~~~~~---~~t~d~i~~~-~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK 226 (355)
T 3p32_A 151 GTLGGVT---RATRETVVLL-EAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNK 226 (355)
T ss_dssp CCHHHHH---HHHHHHHHHH-HHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEEC
T ss_pred ccccchh---HHHHHHHHHH-hhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEEC
Confidence 2222221 2223344322 34567889999888766544444455889999998877665444434567899999999
Q ss_pred CCCCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913 226 TDLASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 226 ~Dl~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+|+.+... ...+.+.+.+..+.+ ..+|+++|+++++|+++|++.+
T Consensus 227 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i 278 (355)
T 3p32_A 227 ADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTV 278 (355)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence 99976521 122334444444432 4789999999999999998754
No 62
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.65 E-value=1.4e-17 Score=153.55 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=108.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHH--HHhccccCchhHHHHHhcCCCccc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGGCPHAA 150 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~~~~~~~~~~~ 150 (275)
..+|++++|+|+||||||||++.|+|+++|+ |+|.+.+.|...... ..+ +..++|++|+... ..+..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-----~~p~~t 228 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-----AKAATV 228 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-----CCHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-----cChhhh
Confidence 4579999999999999999999999999988 999999988654211 112 3468999886310 011111
Q ss_pred hHHHHHHHH------HHHHHhhccccccccccc-ChhHHHHHHHHHHhc-Cce--EEEEeCCCCCCcccccccccc---c
Q 023913 151 IREDISINL------GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDKIPRKGGPGIT---Q 217 (275)
Q Consensus 151 ~~~~~~~~~------~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~--vlllD~t~g~d~~~~~~~~i~---~ 217 (275)
..+.+.... ..++.++.....+..+.| | +||+.++|+++ +|. ++|+||++++|...... .+. .
T Consensus 229 v~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~-~~~~~~g 304 (359)
T 2og2_A 229 LSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR-EFNEVVG 304 (359)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHH-HHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHH-HHHHhcC
Confidence 111111100 001111111111222223 4 79999999998 798 99999999998754332 221 2
Q ss_pred cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
..+|+++|.|.....+..+.. +... +.||.++. .|+.++++...
T Consensus 305 ~t~iiiThlD~~~~gG~~lsi----~~~~--~~pI~~ig--~Ge~~~Dl~~f 348 (359)
T 2og2_A 305 ITGLILTKLDGSARGGCVVSV----VEEL--GIPVKFIG--VGEAVEDLQPF 348 (359)
T ss_dssp CCEEEEESCTTCSCTHHHHHH----HHHH--CCCEEEEE--CSSSGGGEEEC
T ss_pred CeEEEEecCcccccccHHHHH----HHHh--CCCEEEEe--CCCChHhccCC
Confidence 468999999877654444332 2222 46788876 47777766543
No 63
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.65 E-value=8.3e-17 Score=147.45 Aligned_cols=188 Identities=17% Similarity=0.155 Sum_probs=109.4
Q ss_pred ccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhccccCchhHHHHH----hcCCCc
Q 023913 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVE----TGGCPH 148 (275)
Q Consensus 75 ~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~----~~~~~~ 148 (275)
.....++.+++|+|++|||||||++.|++.+.+. +++.+++.++.... ...+.. +...+.. .+++.+
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~-------d~~~~~~~~~~~~~~i~ 122 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG-------DKTRMNDLARAEAAFIR 122 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEE
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceec-------ccchHHhhccCCCceee
Confidence 3445679999999999999999999999998877 89999999886532 111110 0000000 011111
Q ss_pred cch-----HHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEE
Q 023913 149 AAI-----REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI 223 (275)
Q Consensus 149 ~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivl 223 (275)
+.. ........+.+..+ ....++.+++++.|..+....+...+|..++++|+..+...+.....+...+.++|+
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~ 201 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLC-EAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVI 201 (341)
T ss_dssp EECC-----CHHHHHHHHHHHH-HHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEE
T ss_pred cCccccccchhHHHHHHHHHHh-hccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEE
Confidence 110 00111111222221 134678899998886654444334448899999987765433222123467899999
Q ss_pred ecCCCCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913 224 NKTDLASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 224 NK~Dl~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
||+|+..... ..++.+.+.+..+++ ..+++++|+++++|++++++.+
T Consensus 202 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l 255 (341)
T 2p67_A 202 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI 255 (341)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred ECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence 9999986511 112234444444443 4679999999999999998764
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=2.2e-19 Score=153.84 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH-HhcCCCccchHHHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIREDIS 156 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~-~~~~~~~~~~~~~~~ 156 (275)
.+|++++|+||||||||||+++|+|+ +|+ |+|.... +.. ....+++.+||+||++.+++ .+.. .....+.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~--~~~-~~~~~~~~ig~v~q~~~enl~~~~~----~~~~~~~ 91 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRII--LTR-PAVEAGEKLGFLPGTLNEKIDPYLR----PLHDALR 91 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEE--EEE-CSCCTTCCCCSSCC------CTTTH----HHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEE--ecC-CchhhhcceEEecCCHHHHHHHHHH----HHHHHHH
Confidence 67999999999999999999999999 887 9884321 110 11123467999999863333 1100 0000000
Q ss_pred H--HHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913 157 I--NLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGG 204 (275)
Q Consensus 157 ~--~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g 204 (275)
. ....+..+... ..||+||++|||+|+ +|+++||| |+++
T Consensus 92 ~~~~~~~~~~~l~~---------glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 92 DMVEPEVIPKLMEA---------GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp TTSCTTHHHHHHHT---------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HhccHHHHHHHHHh---------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0 00011111111 229999999999999 99999999 7777
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.64 E-value=2.1e-16 Score=156.80 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=74.8
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHH---------------------HHHHhccCCC-CcEEEEeccCC---CCCh
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLAAVTNDIF---TKED 123 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl---------------------~~L~g~l~~~-g~i~i~~~d~~---~~~~ 123 (275)
.++.+.++...+|++++|+||||||||||+ +++.++..|+ +.+......+. ....
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 456666666788999999999999999998 7888887776 54432211110 0001
Q ss_pred HHHHHhccccCchhHHH-------------------HHhcCCCccch------H---H--------HHHHHHHHHHHhhc
Q 023913 124 GEFLMRNGALPEERIRA-------------------VETGGCPHAAI------R---E--------DISINLGPLEELSN 167 (275)
Q Consensus 124 ~~~~~~ig~v~q~~~~~-------------------~~~~~~~~~~~------~---~--------~~~~~~~~L~~l~~ 167 (275)
...++.+|+++|..... ..++...+..+ . . ........++.++.
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 11223456655532110 00111111100 0 0 00011123455544
Q ss_pred ccc-ccccccc-ChhHHHHHHHHHHhc-Cce--EEEEe-CCCCCCccc
Q 023913 168 LFK-ADLLLCE-SGGDNLAANFSRELA-DYI--IYIID-VSGGDKIPR 209 (275)
Q Consensus 168 ~~~-~d~~~~e-S~G~~q~~~laral~-~~~--vlllD-~t~g~d~~~ 209 (275)
... .++.+.+ |+||+||++|||+|+ +|+ |+||| ||+++|...
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~ 239 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD 239 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH
Confidence 432 4666777 999999999999999 777 99999 999998754
No 66
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.62 E-value=2.9e-16 Score=133.74 Aligned_cols=179 Identities=27% Similarity=0.341 Sum_probs=113.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 159 (275)
+..+++|+|++|||||||++.|++.+....++.++.+++....+....+..+.-. . ...++|.|+.....+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~--- 100 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKA----E-AISTGKECHLDAHMIY--- 100 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEE----E-ECCCTTCSSCCHHHHH---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcE----E-EecCCceeecccHHHH---
Confidence 4678999999999999999999987544467888888876422222222211100 0 0012333332222111
Q ss_pred HHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhHH
Q 023913 160 GPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLA 237 (275)
Q Consensus 160 ~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~ 237 (275)
+.+. .....+.+++|+.|+ ..+..+ .+. +..++++|++.+.........++..+.++|+||+|+.+......+
T Consensus 101 ~~~~---~~~~~d~iiidt~G~~~~~~~~--~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 101 HRLK---KFSDCDLLLIENVGNLICPVDF--DLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TTGG---GGTTCSEEEEEEEEBSSGGGGC--CCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHH
T ss_pred HHHH---hcCCCCEEEEeCCCCCCCCchh--ccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHH
Confidence 1111 233578889997784 111000 112 568899998877654433444567889999999999754223567
Q ss_pred HHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 238 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 238 ~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.+.++++++..+++++|+++++|++++++.+.
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 7777888888889999999999999999987653
No 67
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.61 E-value=1.7e-16 Score=144.04 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=111.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
+-++++|+|+||||||||||.|++.. +..+++++.++.+... +....... ... .....+||.||+.+.++...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~-~~~~~aVi~~d~G~i~idg~~l~~~---~~~--~~el~~gCicc~~~~~~~~~ 76 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDR---ATQ--IKTLTNGCICCSRSNELEDA 76 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC-CCCCEEEECSSCCSCCEEEEEECTT---SCE--EEEETTSCEEECTTSCHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc-CCCcEEEEEecCcccCccHHHHhCC---CCC--EEEECCCceEEcccHHHHHH
Confidence 46899999999999999999999986 2234555555544432 11000000 000 01125799999987665443
Q ss_pred HHHH-HHhhcc-cccccccccChhHHHHHHHHHHh-----------cCceEEEEeCCCCCCccc---cccccccccCEEE
Q 023913 159 LGPL-EELSNL-FKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIPR---KGGPGITQADLLV 222 (275)
Q Consensus 159 ~~~L-~~l~~~-~~~d~~~~eS~G~~q~~~laral-----------~~~~vlllD~t~g~d~~~---~~~~~i~~adiiv 222 (275)
...+ ..+... ..+++.+.|+.|...+..+++.+ ++..+.++|.....+... ....|...+|+++
T Consensus 77 l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred HHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence 3222 111111 13588899966643222222221 155677889766544322 2346678999999
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+||.|+.++ . +.+.+.+++++|.++|+.+|. ....++.+++..
T Consensus 157 l~k~dl~de--~--~~l~~~l~~l~~~~~ii~~sh-~~~~~~~l~~~~ 199 (318)
T 1nij_A 157 LTKTDVAGE--A--EKLHERLARINARAPVYTVTH-GDIDLGLLFNTN 199 (318)
T ss_dssp EECTTTCSC--T--HHHHHHHHHHCSSSCEEECCS-SCCCGGGGSCCC
T ss_pred EECcccCCH--H--HHHHHHHHHhCCCCeEEEecc-cCCCHHHHhCCC
Confidence 999999965 2 778888888999999998775 345667676643
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.59 E-value=8e-16 Score=156.85 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=82.3
Q ss_pred CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchh-------
Q 023913 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER------- 137 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~------- 137 (275)
|+++.++.+.++...+|++++|+|||||||||||++|+| |.+ .+.+... ..+++|++|+.
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~------~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQE------ECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTT------TSCEEETTCCCCCCCTTS
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCcccc------ceeEEEEcccccccccCC
Confidence 334555556666678899999999999999999999995 121 1111100 01245666542
Q ss_pred --HHHHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 138 --IRAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
.+++.. ... .. ...+.+.|+.++.. ...++.+.+ |+||+||++|||+|+ +|+|+||| |++++|...
T Consensus 512 tv~e~l~~-~~~--~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~ 583 (986)
T 2iw3_A 512 SVLDFVFE-SGV--GT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583 (986)
T ss_dssp BHHHHHHT-TCS--SC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH
T ss_pred cHHHHHHH-hhc--CH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 122222 000 01 22334567777653 345666667 999999999999999 99999999 999998654
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.56 E-value=4.4e-15 Score=147.24 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=37.1
Q ss_pred HHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-Cc---eEEEEe-CCCCCCccc
Q 023913 160 GPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPR 209 (275)
Q Consensus 160 ~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~---~vlllD-~t~g~d~~~ 209 (275)
+.+..+.... ..+..+.+ |+||+||++|||+|+ +| +|+|+| ||+++|...
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~ 581 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 581 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH
Confidence 3455554432 34556666 999999999999998 44 699999 999998653
No 70
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.55 E-value=1.8e-14 Score=130.05 Aligned_cols=167 Identities=13% Similarity=0.076 Sum_probs=103.5
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-H---HH--HHhccccCchhHHHHHhcCCCccchH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-G---EF--LMRNGALPEERIRAVETGGCPHAAIR 152 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~---~~--~~~ig~v~q~~~~~~~~~~~~~~~~~ 152 (275)
+|++++|+||||||||||+++|+++++|+ |+|.+.+.|...... . .+ +..++|++|+.. ..+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~------~~p~~~v~ 174 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG------TDSAALAY 174 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT------CCHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC------CCHHHHHH
Confidence 68999999999999999999999999998 999999988754321 1 12 346889998641 11111111
Q ss_pred HHHHHHHHHHHHhhccccccccccc------------ChhHHHHHHHHHHhc-Cce--EEEEeCCCCCCccccccccc--
Q 023913 153 EDISINLGPLEELSNLFKADLLLCE------------SGGDNLAANFSRELA-DYI--IYIIDVSGGDKIPRKGGPGI-- 215 (275)
Q Consensus 153 ~~~~~~~~~L~~l~~~~~~d~~~~e------------S~G~~q~~~laral~-~~~--vlllD~t~g~d~~~~~~~~i-- 215 (275)
+.+.. ... ...+..+.+ +...+|++.+||+++ +|. ++++|++++.+.........
T Consensus 175 ~~v~~---~~~-----~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~ 246 (304)
T 1rj9_A 175 DAVQA---MKA-----RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA 246 (304)
T ss_dssp HHHHH---HHH-----HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH
T ss_pred HHHHH---HHh-----CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 11110 000 011222222 334478999999998 676 77899988876443221111
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
....+|++||.|.....+..+ ...... +.||.++. .|+.++++..
T Consensus 247 ~~~t~iivTh~d~~a~gg~~l----~i~~~~--~~pi~~ig--~Ge~~~dl~~ 291 (304)
T 1rj9_A 247 VGLTGVIVTKLDGTAKGGVLI----PIVRTL--KVPIKFVG--VGEGPDDLQP 291 (304)
T ss_dssp HCCSEEEEECTTSSCCCTTHH----HHHHHH--CCCEEEEE--CSSSTTCEEE
T ss_pred cCCcEEEEECCcccccccHHH----HHHHHH--CCCeEEEe--CCCChhhccc
Confidence 134789999998765432222 222233 47888887 4777765543
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.2e-17 Score=153.92 Aligned_cols=123 Identities=16% Similarity=-0.032 Sum_probs=79.5
Q ss_pred cccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-c-EEEEeccCCCCChHHHHHhccccCchhHHHH---------
Q 023913 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERIRAV--------- 141 (275)
Q Consensus 74 ~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~--------- 141 (275)
.++...+|++++|+||||||||||+|+|+|++.|+ | + |.+++ ++ ++.++|+||+...+.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~--------~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DP--------QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CT--------TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Cc--------cCCeeeeccchhhcccccccchhh
Confidence 34445679999999999999999999999999998 9 8 87776 21 356899998752100
Q ss_pred -HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHH--hc-CceE----EEEeC--CCCCCcc
Q 023913 142 -ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE--LA-DYII----YIIDV--SGGDKIP 208 (275)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~lara--l~-~~~v----lllD~--t~g~d~~ 208 (275)
.++...... ......+...++.++.....+ ..+ |+||+||+++||+ |+ +|++ +|+|. ++++|..
T Consensus 202 ni~~~~~~~~-~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 202 PTWGQSLTSG-ATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp TTCSCBCBSS-CCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred hhcccccccC-cchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 011100000 000011112233333322222 334 9999999999999 98 9999 99995 5566654
No 72
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.51 E-value=7.1e-15 Score=125.47 Aligned_cols=180 Identities=32% Similarity=0.423 Sum_probs=114.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHh-cCCCccchHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-GGCPHAAIREDISIN 158 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~-~~~~~~~~~~~~~~~ 158 (275)
+..+++|+|+.|+|||||++.++.......++.+++.++....+....+..+. ....+ +++.++....+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~------~~~~~~~~~~~~l~~~~~--- 107 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA------KVVPLNTGKECHLDAHLV--- 107 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTC------EEEEEECTTCSSCCHHHH---
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCC------cEEEecCCceEeccHHHH---
Confidence 46789999999999999999999875544677778877753223222222111 00111 244433222222
Q ss_pred HHHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhH
Q 023913 159 LGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL 236 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~ 236 (275)
.+.+..+ ....++.+++++.|. ..+.. .... ...+.++|+..+.+.+..+..++..++++|+||+|+.+......
T Consensus 108 ~~~~~~l-~~~~~d~~~id~~g~i~~~~s--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 184 (226)
T 2hf9_A 108 GHALEDL-NLDEIDLLFIENVGNLICPAD--FDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADI 184 (226)
T ss_dssp HHHHTTS-CGGGCSEEEEECCSCSSGGGG--CCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCH
T ss_pred HHHHHHH-hcCCCCEEEEeCCCCccCcch--hhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHH
Confidence 2233322 133568888887662 11100 0112 44567888666655555555667889999999999975421246
Q ss_pred HHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 237 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 237 ~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+.+.+.++++++..+++++|+++++|++++++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 219 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE 219 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 67777778888889999999999999999987653
No 73
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.50 E-value=5.7e-14 Score=128.01 Aligned_cols=167 Identities=20% Similarity=0.335 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH----HHHhcc--ccCchhHHHHHhcCCCccch
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNG--ALPEERIRAVETGGCPHAAI 151 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~----~~~~ig--~v~q~~~~~~~~~~~~~~~~ 151 (275)
.+|++++|+||||||||||++.|+++++|+ |+|.+.+.|+......+ +.+++| +++|.. +..+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~------~~~p~~~v 200 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY------GADPAAVA 200 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT------TCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc------cCCHHHHH
Confidence 569999999999999999999999999998 99999999986544322 234455 566542 11111111
Q ss_pred HHHHHHHHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-CceEEEEeCCCCCCccccccccc---cccC
Q 023913 152 REDISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGI---TQAD 219 (275)
Q Consensus 152 ~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i---~~ad 219 (275)
.+ .+.. ......+.+++++.|. .+...+++++. ++.++++|++++.+...... .+ ....
T Consensus 201 ~e-------~l~~-~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~-~~~~~~~it 271 (328)
T 3e70_C 201 YD-------AIQH-AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQAR-QFNEAVKID 271 (328)
T ss_dssp HH-------HHHH-HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH-HHHHHSCCC
T ss_pred HH-------HHHH-HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHH-HHHHhcCCC
Confidence 11 1111 1112345555553332 23445677777 88999999988865433221 12 1356
Q ss_pred EEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 220 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 220 iivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
.|++||.|.....+..+ ..+... +.||.+++ +|++++++..
T Consensus 272 ~iilTKlD~~a~~G~~l----~~~~~~--~~pi~~i~--~Ge~v~dl~~ 312 (328)
T 3e70_C 272 GIILTKLDADARGGAAL----SISYVI--DAPILFVG--VGQGYDDLRP 312 (328)
T ss_dssp EEEEECGGGCSCCHHHH----HHHHHH--TCCEEEEE--CSSSTTCEEE
T ss_pred EEEEeCcCCccchhHHH----HHHHHH--CCCEEEEe--CCCCcccccc
Confidence 89999999765533332 233333 57898888 6888866544
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.50 E-value=2.2e-15 Score=124.54 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=64.3
Q ss_pred ccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (275)
Q Consensus 75 ~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~ 154 (275)
++...+|++++|+||||||||||++++.+- ... ... ..+ + |+++|++.... ......+.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~-----~~~-~~~-------d~~-~--g~~~~~~~~~~-----~~~~~~~~ 61 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKP-----TEV-ISS-------DFC-R--GLMSDDENDQT-----VTGAAFDV 61 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSCG-----GGE-EEH-------HHH-H--HHHCSSTTCGG-----GHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHccC-----CeE-Ecc-------HHH-H--HHhcCcccchh-----hHHHHHHH
Confidence 344567999999999999999999986532 111 111 111 1 45555431000 00000011
Q ss_pred HHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
...........+.....+.....|+|++||+++|++++ +|.++++| |++++|...
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~ 118 (171)
T 4gp7_A 62 LHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN 118 (171)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence 11111111112222222333334999999999999999 89999999 777777643
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.49 E-value=2.2e-14 Score=145.54 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=40.0
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~ 209 (275)
.+.|+.+.+.. ..+..+.+ |+||+||+.||++|+ + |.|+||| ||+|+|...
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~ 883 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 883 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHH
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHH
Confidence 34566666554 45566666 999999999999998 4 4999999 999998754
No 76
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.49 E-value=5.9e-15 Score=133.70 Aligned_cols=135 Identities=16% Similarity=0.068 Sum_probs=79.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~ 154 (275)
..+|++++|+|+||||||||+++|+|+++|. | ++.++..+..-... ..+..+++.. ..+.+.. .+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~--------~~g~~~~---~d 154 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMH--------RKGFPES---YN 154 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTT--------CTTSGGG---BC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHH--------hcCCChH---HH
Confidence 4669999999999999999999999999886 5 35444433221111 2222222110 0011111 11
Q ss_pred HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccccccccccccCEEEEecCC
Q 023913 155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPGITQADLLVINKTD 227 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~~~~~i~~adiivlNK~D 227 (275)
.....+.|+.+. ....+..+.+ |+||+||+++|++++ +|+|+|+| |+...+... ...-...|..|+-.+|
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--~~l~~~~D~~I~V~a~ 227 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--LMVSDLFDFSLYVDAR 227 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--CCGGGGCSEEEEEEEC
T ss_pred HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--HHHHHhcCcEEEEECC
Confidence 233344566654 2223344445 999999999999988 89999999 555554211 1112345655554444
No 77
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=8.9e-14 Score=132.50 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=103.7
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HH--HHHhccccCchhHHHHHhcCCCcc
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GE--FLMRNGALPEERIRAVETGGCPHA 149 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~--~~~~ig~v~q~~~~~~~~~~~~~~ 149 (275)
...+|++++|+|+||||||||+++|+|+++++ |+|.+.+.+...... .. .++.++|++|... ..+..
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~------~~p~~ 362 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG------ADSAS 362 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT------CCHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC------cCHHH
Confidence 34669999999999999999999999999988 999998877653210 11 2456899888631 01111
Q ss_pred chHHHHHHHHHHHHHhhcccccccccccChhH-----------HHHHHHHHHhc--Cc--eEEEEeCCCCCCcccccccc
Q 023913 150 AIREDISINLGPLEELSNLFKADLLLCESGGD-----------NLAANFSRELA--DY--IIYIIDVSGGDKIPRKGGPG 214 (275)
Q Consensus 150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-----------~q~~~laral~--~~--~vlllD~t~g~d~~~~~~~~ 214 (275)
+. .+.+... ....++.+++++.|. .+++.+++++. .| .++++|+++|.+..... ..
T Consensus 363 tV-------~e~l~~a-~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a-k~ 433 (503)
T 2yhs_A 363 VI-------FDAIQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA-KL 433 (503)
T ss_dssp HH-------HHHHHHH-HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH-HH
T ss_pred HH-------HHHHHHH-HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH-HH
Confidence 11 1122211 223567777775553 23455556553 24 47889999886543221 11
Q ss_pred cc---ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 215 IT---QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 215 i~---~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
|. ..+.+|+||.|.....+..+ ..+... +.||.++. .|++++++..
T Consensus 434 f~~~~~itgvIlTKLD~takgG~~l----si~~~~--~~PI~fig--~Ge~vdDL~~ 482 (503)
T 2yhs_A 434 FHEAVGLTGITLTKLDGTAKGGVIF----SVADQF--GIPIRYIG--VGERIEDLRP 482 (503)
T ss_dssp HHHHTCCSEEEEECGGGCSCCTHHH----HHHHHH--CCCEEEEE--CSSSGGGEEE
T ss_pred HHhhcCCCEEEEEcCCCcccccHHH----HHHHHH--CCCEEEEe--cCCChhhccc
Confidence 21 24679999999755433222 222333 46788876 5888876544
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.46 E-value=3.1e-16 Score=134.75 Aligned_cols=129 Identities=12% Similarity=-0.041 Sum_probs=70.7
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCCh-HHHHHhccccCchhHHHHHhc-CCC-
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETG-GCP- 147 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~~~~~-~~~- 147 (275)
+.+.++...+|++++|+||||||||||+++|+|++ | |.+.+ +.++.+..+ ...++.++|++|++..+.... ...
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDF 89 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccch
Confidence 33444555679999999999999999999999998 6 88887 655433211 112357899999875443211 000
Q ss_pred --ccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHH-----HHHhc-CceEEEEe-CCCCCC
Q 023913 148 --HAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANF-----SRELA-DYIIYIID-VSGGDK 206 (275)
Q Consensus 148 --~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~l-----aral~-~~~vlllD-~t~g~d 206 (275)
..++ ......+.+.++.... . .+-.+ |+||+||+++ +++|+ .|.+.+|| ++...+
T Consensus 90 l~~~~~~~~~~g~~~~~i~~~l~~~~~-~---il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 90 LEYDNYANNFYGTLKSEYDKAKEQNKI-C---LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCE-E---EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hhhhhcccccCCCcHHHHHHHHhCCCc-E---EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 0000 0001112223322110 0 11123 9999999998 55666 56677777 444444
No 79
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.46 E-value=5.5e-14 Score=143.06 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=39.5
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~ 209 (275)
.+.|+.+.+.. ..+..+.+ |+||+||+.||++|+ + |.|+||| ||+|+|...
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~ 901 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD 901 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHH
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH
Confidence 34566665554 44556666 999999999999998 4 5999999 999998654
No 80
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=3.2e-16 Score=141.27 Aligned_cols=170 Identities=16% Similarity=0.055 Sum_probs=75.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhc-cCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH-----HhcCCCc-cchHHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-----ETGGCPH-AAIRED 154 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~-l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~-----~~~~~~~-~~~~~~ 154 (275)
.++|+|+||||||||+++|+|. +.|+ | +.+.+.++... ...+.+++++|...... .+.+... ....+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t---~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT---VQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc---ceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 3499999999999999999997 6776 7 66555443221 11345677776532110 1111100 000000
Q ss_pred HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEe-CCC-CCCcccc-ccccc--cccCEEEEecCCC
Q 023913 155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIID-VSG-GDKIPRK-GGPGI--TQADLLVINKTDL 228 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD-~t~-g~d~~~~-~~~~i--~~adiivlNK~Dl 228 (275)
.......+.. ..+..+.+ |+|++|++.++|+++ ++++| |+. ++|.... ....+ ...-++|+||+|+
T Consensus 96 ~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~---ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC---CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE---EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGG
T ss_pred HHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh---eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 0000111111 12233334 999999988777764 66666 655 4765432 11111 1245788999999
Q ss_pred CccchhhH----HHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 229 ASAIGADL----AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 229 ~~~~~~~~----~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
.+. .++ +++.+.++.. +.+++++|++++ ++++++..
T Consensus 168 ~~~--~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~ 207 (301)
T 2qnr_A 168 LTL--KERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKE 207 (301)
T ss_dssp SCH--HHHHHHHHHHHHHHHHT--TCCCCCCC----------CHH
T ss_pred CCH--HHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHH
Confidence 865 233 3444555554 478999999999 99887653
No 81
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.45 E-value=3.2e-14 Score=143.55 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=39.9
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~ 209 (275)
.+.|+.+.+.. ..+..+.+ |+||+||+.||++|+ + |.|+||| ||+|+|...
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~ 768 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD 768 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH
Confidence 44566666554 24555666 999999999999999 4 6999999 999998754
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.44 E-value=1.6e-14 Score=120.53 Aligned_cols=105 Identities=18% Similarity=0.016 Sum_probs=63.6
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L 162 (275)
+++|+||||||||||+++|+|++. +.+.+.+..........+.+||++|+. .+.... + ..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~--------~~~ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F--------SSK 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E--------EET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H--------Hhh
Confidence 689999999999999999999985 333433221111113456789998874 111000 0 000
Q ss_pred HHhhccccccccccc-ChhHHHHHHHHHH-----hc-CceEEEEeC---CCCCCc
Q 023913 163 EELSNLFKADLLLCE-SGGDNLAANFSRE-----LA-DYIIYIIDV---SGGDKI 207 (275)
Q Consensus 163 ~~l~~~~~~d~~~~e-S~G~~q~~~lara-----l~-~~~vlllD~---t~g~d~ 207 (275)
.+......+..+.+ |+||+||+++|++ ++ +|.++|+|+ ++++|.
T Consensus 63 -~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 63 -FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp -TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred -cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence 00000123344445 9999999999996 77 899999996 555664
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.43 E-value=5.8e-15 Score=138.40 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=58.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHH
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (275)
+++|+||||||||||+|+|+|+++|+ |+|.+.+.+.. +.++++|.+. +..+.......+........+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---------~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~ 140 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---------MERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTY 140 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------eeEEeccccc-cCCeeehHhhcccchHHHHHHH
Confidence 99999999999999999999999998 99877654331 1267777531 0000000000000000112334
Q ss_pred HHHhhcccccccccccChh--HHHHHHHHHHhc
Q 023913 162 LEELSNLFKADLLLCESGG--DNLAANFSRELA 192 (275)
Q Consensus 162 L~~l~~~~~~d~~~~eS~G--~~q~~~laral~ 192 (275)
++.+..... +..+.-|+| |+|++.+|++|+
T Consensus 141 L~~~~L~~~-~~~~~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 141 LEKMKFYEY-DFFIIISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp HHHTTGGGC-SEEEEEESSCCCHHHHHHHHHHH
T ss_pred HHHcCCCcc-CCeEEeCCCCccHHHHHHHHHHH
Confidence 555543322 222224777 999999999985
No 84
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.40 E-value=1.3e-13 Score=128.46 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~ 209 (275)
|+||+||++||++|+ +| +++||| |++++|...
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~ 332 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA 332 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH
Confidence 999999999999998 88 999999 899998643
No 85
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=6.9e-14 Score=131.25 Aligned_cols=203 Identities=15% Similarity=0.108 Sum_probs=107.8
Q ss_pred CCcceeecCCCCccccCCCCCCCccccccCCCC----CC---CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGY----FS---RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~---~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-+..+.++..+......+..|..+..|..+-. |. ......+.++....++.++|+|+|||||||||++|++.
T Consensus 101 ~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 101 ELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CEEEEECSTTCEEEEECCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred cEEeeccCCCceEEEecCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 345556666666677777777776666665430 00 11112233344566999999999999999999999998
Q ss_pred cCCCCcEEEEeccCCCCChHHHHHhccccCchh---HHHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccc-cccc
Q 023913 105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER---IRAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLL 175 (275)
Q Consensus 105 l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~---~~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~-d~~~ 175 (275)
.+ .+.+..+.+.. ..+|+++++. .....+.+... ..+...+....+....+...... +..+
T Consensus 181 ~~-----~i~~~~ftTl~-----p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~ 250 (416)
T 1udx_A 181 HP-----KIAPYPFTTLS-----PNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL 250 (416)
T ss_dssp CC-----EECCCTTCSSC-----CEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH
T ss_pred Cc-----cccCcccceec-----ceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCH
Confidence 32 11122221111 1233333221 00000111100 00000000000000000000011 2222
Q ss_pred cc-ChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEE
Q 023913 176 CE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254 (275)
Q Consensus 176 ~e-S~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~ 254 (275)
.+ |.|++|++.++++|+ ..+.++|+||+|+... ..++.+.+.++.. +.+++.
T Consensus 251 ~~ls~g~~el~~la~aL~-----------------------~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~--g~~vi~ 303 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALL-----------------------RRPSLVALNKVDLLEE--EAVKALADALARE--GLAVLP 303 (416)
T ss_dssp HHHHHHHHHHHHHCHHHH-----------------------HSCEEEEEECCTTSCH--HHHHHHHHHHHTT--TSCEEE
T ss_pred HHHHHHHHHHHHHhHHhh-----------------------cCCEEEEEECCChhhH--HHHHHHHHHHHhc--CCeEEE
Confidence 23 778888888777663 4556777899998765 4445555544432 468999
Q ss_pred EEecCCcCHHHHhcccc
Q 023913 255 AQVGWVIGIIFTLSITH 271 (275)
Q Consensus 255 ~S~~~~~g~~~l~~~~~ 271 (275)
+||++++|++++++.+.
T Consensus 304 iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 304 VSALTGAGLPALKEALH 320 (416)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHH
Confidence 99999999999987543
No 86
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.38 E-value=3.7e-14 Score=127.93 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=67.0
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHH-hccccCchhHHHHHhcCCCc
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERIRAVETGGCPH 148 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~~~~~~~~~~ 148 (275)
++.+.++...+|++++|+||||||||||+++|+|++ .|+|..........-...++. ++++.++
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~~~~------------- 179 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAALVDD------------- 179 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEEEEE-------------
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhccCcc-------------
Confidence 444555566779999999999999999999999998 788754332211111111111 2222111
Q ss_pred cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeCCCCCCccc
Q 023913 149 AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR 209 (275)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~t~g~d~~~ 209 (275)
.+ . ...+.++.+ ....++ ... |+||+|| ||+++ +|+|+| |+++|...
T Consensus 180 ~~--~---~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~ 228 (305)
T 2v9p_A 180 AT--H---ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV---TSNIDVQA 228 (305)
T ss_dssp EC--H---HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE---EESSCSTT
T ss_pred cc--H---HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---ECCCCHHH
Confidence 01 0 112233332 122233 233 9999999 99998 899998 77777644
No 87
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.36 E-value=5.1e-13 Score=120.48 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=53.0
Q ss_pred CceEEEEeCCCCCCcccc-----ccccccccCEEEEecCCCC-ccchhhHHHHHHHHHhcC-CCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLA-SAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~-----~~~~i~~adiivlNK~Dl~-~~~~~~~~~~~~~i~~~~-~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|++.+...... .......+.++|+||+|+. +. .......+.+.+.. +..+++++||+++.|+++
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~--~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~ 171 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA--KNVLPLIDEIHKKHPELTEIVPISALKGANLDE 171 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG--GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHH
T ss_pred CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH--HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHH
Confidence 788999998876432211 1112356779999999998 44 33344444555544 678999999999999999
Q ss_pred Hhccc
Q 023913 266 TLSIT 270 (275)
Q Consensus 266 l~~~~ 270 (275)
+++.+
T Consensus 172 L~~~l 176 (308)
T 3iev_A 172 LVKTI 176 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 88
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.30 E-value=9e-14 Score=130.56 Aligned_cols=164 Identities=13% Similarity=-0.079 Sum_probs=74.1
Q ss_pred EEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHh-----cCCCcc-chHHH
Q 023913 84 VGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-----GGCPHA-AIRED 154 (275)
Q Consensus 84 v~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~-----~~~~~~-~~~~~ 154 (275)
++|+|+||||||||+++|+|...+. + .+.+.. ..+. ....+++++|.......+ .+.... .....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~--~~t~----~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI--KKTV----QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CC----EEEEEECC------CEEEEEEECC-----------
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC--ccce----eeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 4999999999999999999987643 3 221111 0000 123466766653211001 111000 00000
Q ss_pred HHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-Cce---EEEEe-CC-CCCCcccc-ccccc--cccCEEEEec
Q 023913 155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYI---IYIID-VS-GGDKIPRK-GGPGI--TQADLLVINK 225 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~---vlllD-~t-~g~d~~~~-~~~~i--~~adiivlNK 225 (275)
...+.+.+.. .+ +.++++++.++|+++ ++. ++++| |+ .+++.... ....+ ..+-++|+||
T Consensus 108 ~~~i~~~i~~-----~~------~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK 176 (418)
T 2qag_C 108 WQPVIDYIDS-----KF------EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAK 176 (418)
T ss_dssp CHHHHHHHHH-----HH------HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEES
T ss_pred HHHHHHHHHH-----HH------HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEc
Confidence 0011111111 00 334567788899887 777 77777 55 46664431 11111 3456889999
Q ss_pred CCCCccchhhHH----HHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 226 TDLASAIGADLA----VMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 226 ~Dl~~~~~~~~~----~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+|+.+. .++. .+.+.+... +.+++.+|++++.++++++.
T Consensus 177 ~Dll~~--~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~ 219 (418)
T 2qag_C 177 ADTLTP--EECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVK 219 (418)
T ss_dssp TTSSCH--HHHHHHHHHHHHHHHHH--TCCCCCCC------------
T ss_pred ccCccH--HHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHH
Confidence 999875 3343 333444443 57788999999888876544
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.30 E-value=3.9e-13 Score=122.61 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=63.4
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~ 151 (275)
+.++...+|++++|+||||||||||+++|+|+++|+ |.|.+.+.+..... ..++.+++++
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~~~~----------------- 223 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQLFF----------------- 223 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEEEEC-----------------
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEEEEe-----------------
Confidence 444445679999999999999999999999999998 88888764311100 0001111110
Q ss_pred HHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEeCCCC
Q 023913 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGG 204 (275)
Q Consensus 152 ~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD~t~g 204 (275)
.+|++|+++++++|. +|+++|+|++.+
T Consensus 224 --------------------------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 224 --------------------------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp --------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred --------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 179999999999999 999999996554
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.28 E-value=1.1e-11 Score=126.24 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=38.1
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~ 209 (275)
.+.|+.+++.+ ..+..+.+ ||||+||+.|||+|+ + |.|+||| ||+++|...
T Consensus 786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~ 843 (916)
T 3pih_A 786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED 843 (916)
T ss_dssp HHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH
T ss_pred HHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH
Confidence 34556665543 23445555 999999999999998 3 5899999 999998754
No 91
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.25 E-value=1.8e-11 Score=106.61 Aligned_cols=183 Identities=18% Similarity=0.151 Sum_probs=102.1
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhc---cccCchhHHHHH----hcCCCccc--
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN---GALPEERIRAVE----TGGCPHAA-- 150 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~i---g~v~q~~~~~~~----~~~~~~~~-- 150 (275)
..+++++|+.|+|||||++.|+..+. . .++.++..|++..... +.... .+. . ...... .+++.++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 89 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP-YEPSIDVREFV-T-VEEIMREGYGPNGAIVESYD 89 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS-SCCSEEGGGTC-C-HHHHHTTTCCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC-CCCCCChhhcc-c-HHHHhhccCCCCCcEEecHH
Confidence 56899999999999999999998777 6 5899999888632100 00000 000 0 000000 01111111
Q ss_pred hH-HHHHHHHHHHHHhhcccccccccccChhHHHHHHH-------HHHhcC-ceEEEEeCCCCCCccccc---------c
Q 023913 151 IR-EDISINLGPLEELSNLFKADLLLCESGGDNLAANF-------SRELAD-YIIYIIDVSGGDKIPRKG---------G 212 (275)
Q Consensus 151 ~~-~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~l-------aral~~-~~vlllD~t~g~d~~~~~---------~ 212 (275)
.. .......+.++.+. ..++.++++++|+.....+ ..++.+ ..|+++|++...+..... .
T Consensus 90 ~~~~~~~~l~~~l~~~~--~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 90 RLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HHHTTHHHHHHHHHHHH--HHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHh--hcCCEEEEeCCCccchhhhhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 00 01111222333332 3478999998887554332 123334 445567765443322110 1
Q ss_pred ccccccCEEEEecCCCCccchhhHHHHHH----------H------------------HHhcCCCCCEEEEEecCCcCHH
Q 023913 213 PGITQADLLVINKTDLASAIGADLAVMER----------D------------------ALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 213 ~~i~~adiivlNK~Dl~~~~~~~~~~~~~----------~------------------i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
.+...+.++|+||+|+.+. .+.+.+.+ . +.+.++..+++++|+++++|++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHHTSCEEEEECCGGGCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred cccCCCeEEEEeccccccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 2235678999999999865 22222221 1 2445566789999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++.+.
T Consensus 246 ~l~~~i~ 252 (262)
T 1yrb_A 246 DLETLAY 252 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 92
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.25 E-value=1.8e-12 Score=116.66 Aligned_cols=74 Identities=11% Similarity=-0.017 Sum_probs=50.3
Q ss_pred CceEEEEeCCCCCCccccc-ccc---c--cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913 193 DYIIYIIDVSGGDKIPRKG-GPG---I--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~-~~~---i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l 266 (275)
+..++++|++.+....... ..+ . ..+-++|+||+|+... .. + +.+.++++.+..+++++||+++.|++++
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~--~~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY--PE-E-AMKAYHELLPEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS--HH-H-HHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc--hH-H-HHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence 7789999987764322211 111 2 4567899999999865 22 0 2334444456678999999999999999
Q ss_pred hccc
Q 023913 267 LSIT 270 (275)
Q Consensus 267 ~~~~ 270 (275)
++.+
T Consensus 164 ~~~l 167 (301)
T 1wf3_A 164 KADL 167 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 93
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.23 E-value=1.7e-12 Score=116.77 Aligned_cols=148 Identities=14% Similarity=0.069 Sum_probs=83.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
.++.+++|+|++|||||||++.|+|. ++.+....+.+... +..|++.++
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~-----~~~i~s~~~~tTr~----~~~gi~~~~---------------------- 54 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ-----KISITSRKAQTTRH----RIVGIHTEG---------------------- 54 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC-----SEEECCCCSSCCSS----CEEEEEEET----------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC-----CccccCCCCCccee----eEEEEEEEC----------------------
Confidence 34568999999999999999999997 34443333322211 122333221
Q ss_pred HHHHHHhhcccccccccccChhHH-H-HHHHHH--------Hhc--CceEEEEeCCCCCCcccc-cccc---ccccCEEE
Q 023913 159 LGPLEELSNLFKADLLLCESGGDN-L-AANFSR--------ELA--DYIIYIIDVSGGDKIPRK-GGPG---ITQADLLV 222 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~eS~G~~-q-~~~lar--------al~--~~~vlllD~t~g~d~~~~-~~~~---i~~adiiv 222 (275)
.....+.+++|.. + +-.+.+ ++. +..++++|++. ...... .... ...+.+++
T Consensus 55 -----------~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilv 122 (301)
T 1ega_A 55 -----------AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA 122 (301)
T ss_dssp -----------TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEE
T ss_pred -----------CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEE
Confidence 1122333444432 1 111111 111 45677788765 322211 1111 24677999
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+||+|+.... ..+....+.+.+..+..+++++|++++.|++++++.+
T Consensus 123 lNK~D~~~~~-~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 123 VNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp EESTTTCCCH-HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred EECcccCccH-HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 9999998621 3333333344444444579999999999999998754
No 94
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.23 E-value=7.3e-12 Score=113.45 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=30.8
Q ss_pred cccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913 172 DLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 172 d~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~ 209 (275)
+..+.+ |+||+|+++||++|+ +|+++|+| |++++|...
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~ 258 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN 258 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH
Confidence 344455 999999999999984 57899999 888988653
No 95
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.21 E-value=1.9e-13 Score=113.39 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=64.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCCC---hHHHH-Hhcc----ccCchhHHHHHhcCCCcc
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA 149 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~~---~~~~~-~~ig----~v~q~~~~~~~~~~~~~~ 149 (275)
++++|+|++|||||||+++|+++++|+ |.|.+.+.++.+.+ ...++ +.+| +++|+...+ +. . .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~--~-~ 77 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR--R-V 77 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE--E-C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee--c-C
Confidence 689999999999999999999999875 67777776654432 23444 4678 667654211 00 0 0
Q ss_pred chHHHHHHHHHHHHHhhccccccccccc--ChhHHHHHHHHHHhc-CceE
Q 023913 150 AIREDISINLGPLEELSNLFKADLLLCE--SGGDNLAANFSRELA-DYII 196 (275)
Q Consensus 150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~e--S~G~~q~~~laral~-~~~v 196 (275)
. .+......+.+... .. .++..+.| |+||+||+++||+++ +|.+
T Consensus 78 ~-~~~~a~l~~~i~~~-l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 78 S-EEEGNDLDWIYERY-LS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp C-HHHHTCHHHHHHHH-TT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred C-hhhhhCHHHHHHhh-CC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 0 01000111222220 12 68888888 999999999999998 5654
No 96
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.21 E-value=4.9e-12 Score=106.09 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=50.9
Q ss_pred CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---------------C
Q 023913 193 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---------------D 248 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---------------~ 248 (275)
+..++++|.+....... .. ......+-++|.||+|+... ...+++.+.+.... .
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNAR 171 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHHHHHhCcccccccccccccccccCc
Confidence 67888999876532111 00 01123456889999999764 34555666555321 3
Q ss_pred CCCEEEEEecCCcCHHHHhcccc
Q 023913 249 GGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 249 ~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
..+++++||++|+|++++++.+.
T Consensus 172 ~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 172 PLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999998764
No 97
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.21 E-value=1.1e-11 Score=116.83 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=51.3
Q ss_pred cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHH
Q 023913 192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~ 264 (275)
++..++++|++.+....... ......+-++|+||+|+.+......+++.+.+.+. ...++++++||++|.|++
T Consensus 264 ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 343 (439)
T 1mky_A 264 ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 343 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHH
Confidence 36778888987664322111 11124566899999999865222244444444322 246899999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 344 ~l~~~i 349 (439)
T 1mky_A 344 RMIDAM 349 (439)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 98
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.18 E-value=1.5e-11 Score=104.15 Aligned_cols=79 Identities=8% Similarity=-0.098 Sum_probs=52.5
Q ss_pred CceEEEEeCCCCCCcccc-c---cccccccCEEEEecCCCCccch--hhHHHHHHHHHhc-----CCCCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIG--ADLAVMERDALRM-----RDGGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~-~---~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~-----~~~~~ii~~S~~~~~ 261 (275)
+..++++|++.+...... . ......+-++|+||+|+.+... ...+.+.+.+... ....+++++|+++++
T Consensus 117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~ 196 (223)
T 4dhe_A 117 CGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT 196 (223)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence 447889998765432211 1 1113456789999999987521 1234444555554 467889999999999
Q ss_pred CHHHHhcccc
Q 023913 262 GIIFTLSITH 271 (275)
Q Consensus 262 g~~~l~~~~~ 271 (275)
|++++++.+.
T Consensus 197 gv~~l~~~l~ 206 (223)
T 4dhe_A 197 GLDDAHALIE 206 (223)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998653
No 99
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.18 E-value=1.7e-11 Score=121.47 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=77.2
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~ 154 (275)
..+++.++|+|++|||||||++.|++...+ . |+| ..+..+....+.++.+.+++.++...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~---------------- 68 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAP---------------- 68 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEE----------------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceE----------------
Confidence 356899999999999999999999986553 3 766 33444444455555666666555320
Q ss_pred HHHHHHHHHHhhcccccccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCC
Q 023913 155 ISINLGPLEELSNLFKADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTD 227 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~D 227 (275)
+ ........+.++.|+.. .....+++ ++..++++|++.+.+.+... ......+-++++||+|
T Consensus 69 ----------~-~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 69 ----------L-LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----------E-EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ----------E-eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCc
Confidence 0 00112333444556432 12222333 38999999999887754321 1122456789999999
Q ss_pred CC
Q 023913 228 LA 229 (275)
Q Consensus 228 l~ 229 (275)
+.
T Consensus 138 ~~ 139 (665)
T 2dy1_A 138 KG 139 (665)
T ss_dssp GC
T ss_pred hh
Confidence 97
No 100
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.16 E-value=2.5e-12 Score=111.86 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=60.1
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~ 139 (275)
+..++.+.++...+|++++|+||||||||||+++|++++. .+.+. ...+.++|++|+.. +
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG---~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG---QNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHT---GGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc---hhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 4455666666667799999999999999999999999762 22111 11234555555421 1
Q ss_pred HHHh-cCCCccc--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeC
Q 023913 140 AVET-GGCPHAA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV 201 (275)
Q Consensus 140 ~~~~-~~~~~~~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~ 201 (275)
+... .+..... ...+.....+.|+.+ ....+..+.+ |+|++||+.+ ++++ +|.++|+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg 141 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEG 141 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEEC
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeC
Confidence 1111 1110000 000112223344433 2233444444 9999999876 4555 789999994
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.16 E-value=3.5e-11 Score=100.09 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=50.3
Q ss_pred CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC----------CCCCEE
Q 023913 193 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMR----------DGGPFI 253 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~----------~~~~ii 253 (275)
+..++++|.+....... .. ...-..+-++|.||+|+... ...+++.+.+.... ...+++
T Consensus 92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T 1m2o_B 92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVF 169 (190)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHHHHhCCccccccccccccceEEEE
Confidence 67788899876532111 00 01123456889999999764 34455655554322 346799
Q ss_pred EEEecCCcCHHHHhcccc
Q 023913 254 FAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 254 ~~S~~~~~g~~~l~~~~~ 271 (275)
++|+++++|++++++.+.
T Consensus 170 ~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 170 MCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp ECBTTTTBSHHHHHHHHH
T ss_pred EeECCcCCCHHHHHHHHH
Confidence 999999999999998653
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.15 E-value=3.1e-11 Score=101.27 Aligned_cols=79 Identities=11% Similarity=-0.004 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCccc-cc---cccccccCEEEEecCCCCccchh--hHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913 193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGA--DLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-~~---~~~i~~adiivlNK~Dl~~~~~~--~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l 266 (275)
+..+++.|.+.+..... .. ......+.+++.||+|+.+.... .++.+++.+.+......++++|++++.+++++
T Consensus 110 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 110 QGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHH
T ss_pred cEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHH
Confidence 45567777655432211 01 11223455778999999875211 13444455555444567899999999999999
Q ss_pred hcccc
Q 023913 267 LSITH 271 (275)
Q Consensus 267 ~~~~~ 271 (275)
++.+.
T Consensus 190 ~~~l~ 194 (210)
T 1pui_A 190 RQKLD 194 (210)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 103
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.15 E-value=2.3e-11 Score=100.27 Aligned_cols=77 Identities=12% Similarity=-0.008 Sum_probs=49.5
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|++........ .......+-++|+||+|+.+. .+.+...+.+++. ....+++++|+++++|+++
T Consensus 106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE 183 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHH
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 457778887655332111 112235677899999999865 3333333333322 2347899999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
+++.+.
T Consensus 184 l~~~l~ 189 (195)
T 3pqc_A 184 LLDLIS 189 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998654
No 104
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.13 E-value=4.4e-11 Score=113.32 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=55.7
Q ss_pred cCceEEEEeCCCCCCccccc-c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHH
Q 023913 192 ADYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGII 264 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~~~~-~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~ 264 (275)
++..|+++|++.+...+... . .....+-+||+||+|+.+......+++.+.+++.. +.++++++||++|.|++
T Consensus 278 ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 357 (456)
T 4dcu_A 278 SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 357 (456)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHH
Confidence 37889999988765433221 1 11245678999999998654345566666666543 36899999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 358 ~l~~~i 363 (456)
T 4dcu_A 358 TLMPAI 363 (456)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 998754
No 105
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.12 E-value=4.5e-11 Score=109.73 Aligned_cols=155 Identities=21% Similarity=0.122 Sum_probs=86.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
.....++|+|++|+|||||++.|++... .+......+... .++.+.+.. .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-----~~~~~~~~t~~~-----~~~~~~~~~--------~------------ 214 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-----EIASYPFTTRGI-----NVGQFEDGY--------F------------ 214 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-----EEECCTTCSSCE-----EEEEEEETT--------E------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCCeeece-----eEEEEEecC--------c------------
Confidence 3467899999999999999999998632 111111111110 111111100 0
Q ss_pred HHHHHHhhccccccccccc-ChhHHHHHHHHHHh-cCceEEEEeCCCCC--Cccc--cc----cccc-cccCEEEEecCC
Q 023913 159 LGPLEELSNLFKADLLLCE-SGGDNLAANFSREL-ADYIIYIIDVSGGD--KIPR--KG----GPGI-TQADLLVINKTD 227 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral-~~~~vlllD~t~g~--d~~~--~~----~~~i-~~adiivlNK~D 227 (275)
.+..+......+....+ +.++++.+. +.+. ++..++++|++... +... .. .... ..+-++|+||+|
T Consensus 215 --~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 215 --RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp --EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred --eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 00000000111122222 667666554 3333 38899999965532 3221 11 1111 355688999999
Q ss_pred CCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 228 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 228 l~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+... ..++.+.+.+.. ...+++++||++|+|++++++.+
T Consensus 292 l~~~--~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~l~~~i 330 (357)
T 2e87_A 292 VADE--ENIKRLEKFVKE--KGLNPIKISALKGTGIDLVKEEI 330 (357)
T ss_dssp TCCH--HHHHHHHHHHHH--TTCCCEECBTTTTBTHHHHHHHH
T ss_pred cCCh--HHHHHHHHHHHh--cCCCeEEEeCCCCcCHHHHHHHH
Confidence 9876 344445555443 35689999999999999998754
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.12 E-value=4.9e-11 Score=114.94 Aligned_cols=107 Identities=15% Similarity=-0.013 Sum_probs=69.5
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCc-EEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHH
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI 155 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~ 155 (275)
-..+|++++|+|+||||||||++.+++...+.|. +.++..+ .....+..+. ..++ ....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e---e~~~~l~~~~----------~~~g----~~~~--- 336 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE---ESRAQLLRNA----------YSWG----MDFE--- 336 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS---SCHHHHHHHH----------HTTS----CCHH---
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe---CCHHHHHHHH----------HHcC----CCHH---
Confidence 3467999999999999999999999999888754 4333221 1122222211 0011 0110
Q ss_pred HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeCCCCCCcc
Q 023913 156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP 208 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~t~g~d~~ 208 (275)
.+..++.....+..+.+ |+|++|++.+++++. +|.++|+||++++|..
T Consensus 337 -----~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~ 386 (525)
T 1tf7_A 337 -----EMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG 386 (525)
T ss_dssp -----HHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred -----HHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh
Confidence 11122222233344445 999999999999998 8999999999888764
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.12 E-value=8.9e-11 Score=97.08 Aligned_cols=77 Identities=8% Similarity=-0.034 Sum_probs=50.4
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHh-c--CCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~-~--~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|++........ .......+-++|+||+|+.+. ...+...+.+++ + ....+++++|++++.|+++
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHH
Confidence 567888898765432221 111234567899999999876 333333333332 2 3467899999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
+++.+.
T Consensus 185 l~~~l~ 190 (195)
T 1svi_A 185 AWGAIK 190 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 108
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.12 E-value=3e-11 Score=98.29 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=52.7
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccc----------cccccCEEEEecCCCCccch-hhH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGP----------GITQADLLVINKTDLASAIG-ADL 236 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~----------~i~~adiivlNK~Dl~~~~~-~~~ 236 (275)
..+.+++|+.....+..... +..|+++|++....... .... ....+-++|+||+|+..... ...
T Consensus 60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~ 139 (182)
T 1ky3_A 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE 139 (182)
T ss_dssp EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred EEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence 34555666544333333333 67888999775432111 0000 02345588999999964311 123
Q ss_pred HHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 237 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 237 ~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+.+.+..+ .....+++++|+++++|++++++.+
T Consensus 140 ~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 140 KSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp HHHHHHHH-HTTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHHHHH-hcCCCeEEEEecCCCCCHHHHHHHH
Confidence 34433333 2456789999999999999998764
No 109
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.11 E-value=6.6e-11 Score=109.17 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=31.5
Q ss_pred ccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCCccc
Q 023913 173 LLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 173 ~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d~~~ 209 (275)
..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~ 320 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN 320 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHH
Confidence 34455 999999999999987 89999999 899998654
No 110
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.11 E-value=9.4e-11 Score=93.77 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=57.1
Q ss_pred ccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--c----ccc---cccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--K----GGP---GITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~----~~~---~i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+.....+.+.. ++..++++|.+....... . ... .-..+-++|+||+|+.+......+.+
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 132 (168)
T 1u8z_A 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132 (168)
T ss_dssp EEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH
Confidence 34455566654333333332 278888999775321110 0 000 01345689999999976432344555
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+..+.. +.+++++|++++.|++++++.+
T Consensus 133 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 133 KNRADQW--NVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp HHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHc--CCeEEEeCCCCCCCHHHHHHHH
Confidence 5555554 3589999999999999998764
No 111
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.10 E-value=1.8e-11 Score=115.58 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=51.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec---cCCCC-----ChHHHHHhccccCch
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----EDGEFLMRNGALPEE 136 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~---d~~~~-----~~~~~~~~ig~v~q~ 136 (275)
.+++.+. +...+|++++|+|+||||||||+++|+|+++|+ |.+.+.+. ++... ....+.+.++|++|.
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4445455 666789999999999999999999999999999 98888876 33211 013355668999985
No 112
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.09 E-value=1.2e-10 Score=93.51 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCcc---cccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIP---RKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~---~~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+...... .... ..-..+-++|+||+|+.+......+...+..... +.+++++|+++++|+
T Consensus 74 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF--DCKFIETSAALHHNV 151 (166)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT--TCEEEECBGGGTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh--CCcEEEeccCCCCCH
Confidence 6788888876432111 0000 0113456889999999865323334444444443 478999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 152 ~~l~~~l 158 (166)
T 3q72_A 152 QALFEGV 158 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 113
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.09 E-value=7e-11 Score=111.30 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=52.5
Q ss_pred cCceEEEEeCCCCCCccccc-c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHH
Q 023913 192 ADYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~~~~-~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~ 264 (275)
++..++++|++.+...+... . .....+-++|+||+|+.+......+++.+.+.+. ...++++++||++|.|++
T Consensus 258 ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~ 337 (436)
T 2hjg_A 258 SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH 337 (436)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHH
Confidence 37889999988765433211 0 1124566889999999875322334444444332 247899999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 338 ~l~~~i 343 (436)
T 2hjg_A 338 TLMPAI 343 (436)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 988643
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.09 E-value=2.5e-10 Score=96.30 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=59.8
Q ss_pred cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--c----cccc---ccccCEEEEecCCCCccchhhHHH
Q 023913 171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--K----GGPG---ITQADLLVINKTDLASAIGADLAV 238 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~----~~~~---i~~adiivlNK~Dl~~~~~~~~~~ 238 (275)
....+.+++|+.....+....+ +..|+++|.+....... . .... -..+-+||+||+|+........+.
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 163 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ 163 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence 3445566677654444444433 67888999875422111 0 1000 134458899999997642223344
Q ss_pred HHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 239 MERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 239 ~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+++..+.. +.+++++|+++++|++++++.+
T Consensus 164 ~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 164 ARELADKY--GIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp HHHHHHHT--TCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHHHC--CCcEEEEECCCCCCHHHHHHHH
Confidence 44444444 4689999999999999998764
No 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.08 E-value=1e-10 Score=107.50 Aligned_cols=109 Identities=16% Similarity=-0.002 Sum_probs=63.1
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccC-CC-CcEEEE-eccCCCCChHHHHHhccccCchhH-----HHHHhcCCCcc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVETGGCPHA 149 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~-g~i~i~-~~d~~~~~~~~~~~~ig~v~q~~~-----~~~~~~~~~~~ 149 (275)
..+|++++|+|+||||||||+|+|+|.+. +. |.|.+. +....+ ...+.+++++|+.. -...++ ....
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~-l~~l 286 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFG-LWHL 286 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCC-CCCC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhh-hcCC
Confidence 34689999999999999999999999998 87 998876 432211 12345788887642 111111 1111
Q ss_pred chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc
Q 023913 150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA 192 (275)
Q Consensus 150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~ 192 (275)
...+....+.+.++.+......+....+ | |++|++++|++++
T Consensus 287 ~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 287 EPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 1111122233455555554445555555 8 9999999998764
No 116
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.08 E-value=3.4e-11 Score=97.92 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=47.0
Q ss_pred CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCC-------CCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD-------GGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~-------~~~ii~~S~~~~~ 261 (275)
+..++++|.+........ .......+-++|+||+|+... ..+.+.+.+.+... ..+++++|++++.
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 567888897654321110 011124566899999999864 22334334433221 2479999999999
Q ss_pred CHHHHhccc
Q 023913 262 GIIFTLSIT 270 (275)
Q Consensus 262 g~~~l~~~~ 270 (275)
|++++++.+
T Consensus 157 gv~~l~~~l 165 (178)
T 2lkc_A 157 GLDHLLEMI 165 (178)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998764
No 117
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.08 E-value=7e-11 Score=95.61 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=52.4
Q ss_pred ccccChhHHH--HHHHHHHhc---CceEEEEeCCCCCCcc--ccccc-------cccccCEEEEecCCCCccchhhHHHH
Q 023913 174 LLCESGGDNL--AANFSRELA---DYIIYIIDVSGGDKIP--RKGGP-------GITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 174 ~~~eS~G~~q--~~~laral~---~~~vlllD~t~g~d~~--~~~~~-------~i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
.+.+++|+.. .-.+.+... +..++++|.+...... ..... .-..+-++|+||+|+.+......+..
T Consensus 55 ~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 134 (175)
T 2nzj_A 55 VVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEG 134 (175)
T ss_dssp EEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred EEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHH
Confidence 3445555443 223333332 6788888976532110 00000 11345688999999976422233344
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+...... +.+++++|+++++|++++++.+
T Consensus 135 ~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 135 RACAVVF--DCKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp HHHHHHH--TSEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHc--CCeEEEEecCCCCCHHHHHHHH
Confidence 3333333 3689999999999999998764
No 118
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.07 E-value=1.8e-10 Score=95.89 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=49.5
Q ss_pred CceEEEEeCCCCCCccc--c----c---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR--K----G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~----~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+....... . . ......+-+||+||+|+.+......+.+.+..+..+ .+++++|++++.|+
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN--VNYVETSAKTRANV 164 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--CEEEEECTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC--CeEEEEeCCCCCCH
Confidence 77888889775321110 0 0 001134558999999997653334455555555543 58999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
++++..+
T Consensus 165 ~~l~~~l 171 (206)
T 2bov_A 165 DKVFFDL 171 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 119
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.07 E-value=4.3e-11 Score=114.32 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=48.8
Q ss_pred cCceEEEEeCCCCCCcccc-ccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 192 ADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~~~-~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
++..|+++|++........ ....+ ..+-++|+||+|+.+. ...+.+.+.+ ....+++++|+++++|++++++.
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~--~~~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~ 398 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--INEEEIKNKL---GTDRHMVKISALKGEGLEKLEES 398 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CCHHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc--cCHHHHHHHh---cCCCcEEEEECCCCCCHHHHHHH
Confidence 3788999998766432211 11111 3456899999999764 2334443332 23468999999999999999875
Q ss_pred c
Q 023913 270 T 270 (275)
Q Consensus 270 ~ 270 (275)
+
T Consensus 399 l 399 (482)
T 1xzp_A 399 I 399 (482)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.07 E-value=1.1e-10 Score=93.68 Aligned_cols=77 Identities=12% Similarity=-0.063 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCCCc---ccc---ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKI---PRK---GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~---~~~---~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+..... ... ... .-..+-++|+||+|+.+......+.+.+..+.+ +..+++++|++++.|+
T Consensus 76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-CNCAFLESSAKSKINV 154 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TSCEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc-cCCcEEEecCCCCCCH
Confidence 778888887653211 110 000 113455889999999765322344454444443 4678999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 155 ~~l~~~l 161 (167)
T 1c1y_A 155 NEIFYDL 161 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 121
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=1.3e-10 Score=93.44 Aligned_cols=77 Identities=12% Similarity=-0.040 Sum_probs=47.6
Q ss_pred CceEEEEeCCCCCCc---cccc--ccc-----ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913 193 DYIIYIIDVSGGDKI---PRKG--GPG-----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 262 (275)
Q Consensus 193 ~~~vlllD~t~g~d~---~~~~--~~~-----i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g 262 (275)
+..++++|.+..... .... ... -..+-++|+||+|+.+......+......+.. +.+++++|++++.|
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--KCAFMETSAKLNHN 153 (172)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh--CCeEEEecCCCCcC
Confidence 788999997753211 1100 000 12455889999999764222223333333333 46899999999999
Q ss_pred HHHHhcccc
Q 023913 263 IIFTLSITH 271 (275)
Q Consensus 263 ~~~l~~~~~ 271 (275)
++++++.+.
T Consensus 154 i~~l~~~l~ 162 (172)
T 2erx_A 154 VKELFQELL 162 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988643
No 122
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.06 E-value=7.6e-11 Score=112.42 Aligned_cols=145 Identities=23% Similarity=0.120 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 159 (275)
++-.++|+|++|+|||||+|.|++.- ..+.....++..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~-----~a~vs~~~gtT~d------------------------------------ 270 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE-----RAIVSHMPGTTRD------------------------------------ 270 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-----CcccCCCCCceEE------------------------------------
Confidence 36679999999999999999998852 1222211111110
Q ss_pred HHHHHhhcccccccccccChhHHHHHH------HHHHh--c---CceEEEEeCCCCCCccc-----cccccc-cccCEEE
Q 023913 160 GPLEELSNLFKADLLLCESGGDNLAAN------FSREL--A---DYIIYIIDVSGGDKIPR-----KGGPGI-TQADLLV 222 (275)
Q Consensus 160 ~~L~~l~~~~~~d~~~~eS~G~~q~~~------laral--~---~~~vlllD~t~g~d~~~-----~~~~~i-~~adiiv 222 (275)
..............+.++.|+.+.-. +.+++ + +..++++|++....... .....+ ..+.++|
T Consensus 271 -~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV 349 (476)
T 3gee_A 271 -YIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTV 349 (476)
T ss_dssp ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEE
T ss_pred -EEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEE
Confidence 00000011123345555666543211 12222 1 67889999887654310 010111 4567899
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+||+|+.+.. ..+. +.+.+. +..+++++|+++++|++++++.+.
T Consensus 350 ~NK~Dl~~~~--~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 350 ANKLDRAANA--DALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp EECTTSCTTT--HHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHT
T ss_pred EECcCCCCcc--chhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHH
Confidence 9999998763 2221 223332 126799999999999999988653
No 123
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.06 E-value=1.5e-10 Score=94.57 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=49.5
Q ss_pred CceEEEEeCCCCCCccc--c----ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR--K----GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~----~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+....... . ... ....+-++|+||+|+.+......+.+.+.++.. +.+++++|+++++|+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW--NVNYVETSAKTRANV 168 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc--CCeEEEeCCCCCCCH
Confidence 78888999765321110 0 000 013455889999999764323445555555554 368999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 169 ~~l~~~l 175 (187)
T 2a9k_A 169 DKVFFDL 175 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 124
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.06 E-value=1.4e-10 Score=92.66 Aligned_cols=76 Identities=16% Similarity=-0.018 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCc---ccc---ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKI---PRK---GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~---~~~---~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+..... ... ... .-..+-++|+||+|+.+......+...+..+.. +.+++++|++++.|+
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW--GCPFMETSAKSKTMV 153 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSCEEEECTTCHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh--CCCEEEecCCCCcCH
Confidence 778888897753211 000 000 113455889999999754222333444444443 468999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 154 ~~l~~~l 160 (167)
T 1kao_A 154 DELFAEI 160 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 125
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.05 E-value=1.8e-10 Score=108.51 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=98.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch---HHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI---REDI 155 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~---~~~~ 155 (275)
++.+++++|++||||||++..|+..+.+. +++.++..|.......+..+. .....+.+.... ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~----------~~~~~gv~~~~~~~~~dp~ 165 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQ----------LGNQIGVQVYGEPNNQNPI 165 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHH----------HHHTTTCCEECCTTCSCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHH----------HHHhcCCceeeccccCCHH
Confidence 57899999999999999999999998877 889999888653211111110 001111111110 0011
Q ss_pred HHHHHHHHHhhcccccccccccChhH----------HHHHHHHHHhc-CceEEEEeCCCCCCcccccccccc---ccCEE
Q 023913 156 SINLGPLEELSNLFKADLLLCESGGD----------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT---QADLL 221 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~eS~G~----------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~---~adii 221 (275)
.....++..+ ....+|.+++++.|. .+...+.+++. +..++++|++.+.+..... ..|. ....|
T Consensus 166 ~i~~~al~~a-~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a-~~f~~~~~~~gV 243 (433)
T 3kl4_A 166 EIAKKGVDIF-VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA-SRFHQASPIGSV 243 (433)
T ss_dssp HHHHHHHHHT-TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH-HHHHHHCSSEEE
T ss_pred HHHHHHHHHH-HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH-HHHhcccCCcEE
Confidence 1122344443 234678888885552 23444555555 6788999998876543211 1122 34678
Q ss_pred EEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913 222 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~ 267 (275)
|+||+|.....+..+... ... +.||.+++. |+++++|-
T Consensus 244 IlTKlD~~a~~G~als~~----~~~--g~Pi~fig~--Ge~v~dL~ 281 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAV----VAT--GATIKFIGT--GEKIDELE 281 (433)
T ss_dssp EEECGGGCSCHHHHHHHH----HHH--TCEEEEEEC--CSSSSCEE
T ss_pred EEecccccccchHHHHHH----HHH--CCCEEEEEC--CCChHhCc
Confidence 999999876533333222 222 678988885 88876543
No 126
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=8.5e-11 Score=97.39 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=82.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
--.++|+|+.|+|||||++.+++...........+.++.. ..+ .
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------~~~-~---------------------------- 66 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV-------KTV-Y---------------------------- 66 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE-------EEE-E----------------------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE-------EEE-E----------------------------
Confidence 4579999999999999999999853221111111111000 000 0
Q ss_pred HHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--ccccccc------cccCEEEEecCCCC
Q 023913 161 PLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPGI------TQADLLVINKTDLA 229 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~i------~~adiivlNK~Dl~ 229 (275)
.........+.+++|+.....+....+ +..++++|.+...... ......+ ..+-++|+||+|+.
T Consensus 67 -----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 67 -----RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp -----ETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -----ECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 001122344555666554334443333 6788899977532111 0111111 23457889999997
Q ss_pred ccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 230 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.......+..+...+.. +.+++++|+++++|++++++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 142 EERVVPTEKGQLLAEQL--GFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp GGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHH
T ss_pred cccccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHH
Confidence 54323334444444444 4689999999999999998754
No 127
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=9.1e-11 Score=97.40 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=49.9
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.+......+.+++..++. +.+++++|++++.|++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI--GAIVVETSAKNAINIE 174 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT--TCEEEECBTTTTBSHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEeCCCCcCHH
Confidence 67888899765432111 111111 3455789999999753223345555555554 4789999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++.+.
T Consensus 175 ~l~~~l~ 181 (192)
T 2fg5_A 175 ELFQGIS 181 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 128
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.04 E-value=2e-10 Score=98.14 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCccc----cccccc-----cccCEEEEecCCCCccchh--h-HHHHHHHHHhcCCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR----KGGPGI-----TQADLLVINKTDLASAIGA--D-LAVMERDALRMRDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~----~~~~~i-----~~adiivlNK~Dl~~~~~~--~-~~~~~~~i~~~~~~~~ii~~S~~~~ 260 (275)
+..|+++|++....... .....+ ..+-++|+||+|+.+.... . .+.+.+.....++..+++++|++++
T Consensus 110 d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 189 (228)
T 2qu8_A 110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTG 189 (228)
T ss_dssp EEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTC
T ss_pred cEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccC
Confidence 57788899876432210 011111 3456889999999764211 1 1233333444434478999999999
Q ss_pred cCHHHHhcccc
Q 023913 261 IGIIFTLSITH 271 (275)
Q Consensus 261 ~g~~~l~~~~~ 271 (275)
+|++++++.+.
T Consensus 190 ~gi~~l~~~l~ 200 (228)
T 2qu8_A 190 VGVEQAKITAC 200 (228)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999987543
No 129
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.04 E-value=2.5e-11 Score=97.79 Aligned_cols=76 Identities=17% Similarity=0.065 Sum_probs=48.6
Q ss_pred CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|.+....... ..... -..+-++|+||+|+.+......+.+++..+.. +.+++++|++++.|++
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 80 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV--GAKHYHTSAKQNKGIE 157 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc--CCeEEEecCCCCCCHH
Confidence 56788889765431110 11011 12345889999999764323344555555544 4789999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 158 ~l~~~l 163 (170)
T 1z08_A 158 ELFLDL 163 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 130
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.03 E-value=1.3e-10 Score=96.19 Aligned_cols=77 Identities=19% Similarity=0.022 Sum_probs=48.4
Q ss_pred CceEEEEeCCCCCCccc---cc---cc---cccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~ 260 (275)
+..|+++|.+....... .. .. ....+-++|+||+|+... ...+++.+.+... ....+++++|++++
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 67889999875432111 00 01 123455889999999865 2334444433221 23457899999999
Q ss_pred cCHHHHhcccc
Q 023913 261 IGIIFTLSITH 271 (275)
Q Consensus 261 ~g~~~l~~~~~ 271 (275)
.|++++++.+.
T Consensus 170 ~gv~~l~~~l~ 180 (188)
T 1zd9_A 170 DNIDITLQWLI 180 (188)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988653
No 131
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=7.8e-12 Score=105.20 Aligned_cols=52 Identities=23% Similarity=0.086 Sum_probs=42.5
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCch
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (275)
|++++|+|+||||||||+++|+|+++ + | +.+.+.+..+.. .+++.+||++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEe
Confidence 67899999999999999999999998 6 8 888776664322 245678998886
No 132
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.03 E-value=1.3e-10 Score=102.37 Aligned_cols=41 Identities=17% Similarity=0.515 Sum_probs=36.8
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCC--CCcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~g~i~i~~~d~ 118 (275)
..+|++++|+||||||||||+++|+|+++| .|+|.+.+.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 678999999999999999999999999986 38998888664
No 133
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=95.63 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=48.7
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .....+ ..+-++|+||+|+.+......+...+..... +.+++++|++++.|++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--GIPFLETSAKNATNVE 167 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCCEEEECTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc--CCcEEEEeCCCCCCHH
Confidence 67888899775321111 010111 3456889999999865333334444444444 4689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 168 ~l~~~l 173 (196)
T 3tkl_A 168 QSFMTM 173 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 134
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.03 E-value=3e-10 Score=92.94 Aligned_cols=76 Identities=17% Similarity=0.072 Sum_probs=49.7
Q ss_pred CceEEEEeCCCCCCc---ccccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEec-CCcC
Q 023913 193 DYIIYIIDVSGGDKI---PRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG-WVIG 262 (275)
Q Consensus 193 ~~~vlllD~t~g~d~---~~~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~-~~~g 262 (275)
+..++++|.+..... ..... .....+-++|+||+|+........+.+++..+..+ .+++++|++ +++|
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--IPYIETSAKDPPLN 168 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--CCEEEEBCSSSCBS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--CeEEEeccCCCCCC
Confidence 778888997754211 10000 01134558899999997643334455555555554 789999999 9999
Q ss_pred HHHHhccc
Q 023913 263 IIFTLSIT 270 (275)
Q Consensus 263 ~~~l~~~~ 270 (275)
++++++.+
T Consensus 169 v~~l~~~l 176 (183)
T 3kkq_A 169 VDKTFHDL 176 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 135
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.03 E-value=1.6e-10 Score=95.28 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=38.9
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
..+-++|+||+|+... ...+++++.++..+ ..+++++|+++++|++++++.+
T Consensus 135 ~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 135 DVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG-KFPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp SSCEEEEEECTTSTTC--CCHHHHHHHHCTTC-CSCEEECBGGGTBTHHHHHHHH
T ss_pred CCCEEEEEEchhcccc--cCHHHHHHHHHhcC-CceEEEEecCCCcCHHHHHHHH
Confidence 3456888999999876 45556665555432 2389999999999999998764
No 136
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.03 E-value=1.2e-10 Score=100.17 Aligned_cols=60 Identities=17% Similarity=0.016 Sum_probs=40.2
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHH--hccCCC-CcEEEEeccCCCCChHHHHHhccccCchh
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALC--KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~--g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
-..+|++++|+||||||||||+++|+ +++.+. +.+.+.+.+. ........+.+|+.+|+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 88 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFGWDFEKY 88 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTTCCHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC-HHHHHHHHHHcCCChHHH
Confidence 35679999999999999999999999 654555 4444443222 111223345678877653
No 137
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.02 E-value=1.1e-10 Score=96.77 Aligned_cols=77 Identities=18% Similarity=0.021 Sum_probs=49.2
Q ss_pred CceEEEEeCCCCCCccc---ccc---cc--c--------cccCEEEEecCCCCccchhhHHHHHHHHH--h--cCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGG---PG--I--------TQADLLVINKTDLASAIGADLAVMERDAL--R--MRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~---~~--i--------~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~--~~~~~~i 252 (275)
+..|+++|.+....... ... .. + ..+-+||+||+|+... ...+++.+.+. . -....++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHHhcchhhccCCeeEE
Confidence 67888999876532111 000 00 1 4566889999999876 33344433332 1 1245689
Q ss_pred EEEEecCCcCHHHHhcccc
Q 023913 253 IFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~~ 271 (275)
+++|+++++|++++++.+.
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp EECBTTTTBTHHHHHHHHH
T ss_pred EEeeCCCccCHHHHHHHHH
Confidence 9999999999999988653
No 138
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.02 E-value=2.2e-10 Score=94.51 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=60.2
Q ss_pred cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc----cccCEEEEecCCCCccchhhHHHHHH
Q 023913 171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI----TQADLLVINKTDLASAIGADLAVMER 241 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i----~~adiivlNK~Dl~~~~~~~~~~~~~ 241 (275)
....+.+++|+.....+.+..+ +..++++|++....... .....+ ..+-++|+||+| ........+.+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~~~~~~~~~~~ 171 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNKFQVDILEVQK 171 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-CCSCHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cccccCCHHHHHH
Confidence 3455666777654333333333 78899999876532111 111111 245588999999 3322234556666
Q ss_pred HHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 242 DALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+++. +.+++++|++++.|++++++.+
T Consensus 172 ~~~~~--~~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 172 YAQDN--NLLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp HHHHT--TCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHc--CCcEEEEecCCCCCHHHHHHHH
Confidence 66654 4689999999999999998764
No 139
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.02 E-value=2.3e-10 Score=92.72 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=57.7
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMER 241 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~ 241 (275)
..+.+++|+.....+.+... +..++++|++....... ..... -..+-++|+||+|+.+......+.+++
T Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 145 (179)
T 1z0f_A 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ 145 (179)
T ss_dssp EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH
Confidence 34455666543323333332 67888999876522111 10000 123458899999997543233455555
Q ss_pred HHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 242 DALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
..+.. +.+++++|++++.|++++++.+
T Consensus 146 ~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 146 FAEEN--GLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp HHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 55554 4689999999999999998754
No 140
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.02 E-value=2.4e-11 Score=99.59 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=43.7
Q ss_pred CceEEEEeCCCCCCcccc-ccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPRK-GGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~-~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|.+........ ....+ ..+-++|+||+|+.... .. ..+. ...+++++||++++|+++
T Consensus 85 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~-------~~~~-~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET-LG-------MSEV-NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-CE-------EEEE-TTEEEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch-hh-------hhhc-cCCceEEEeCCCCCCHHH
Confidence 678889997655422111 11111 24558899999985431 00 0011 346799999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
+++.+.
T Consensus 156 l~~~l~ 161 (172)
T 2gj8_A 156 LRNHLK 161 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987543
No 141
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.01 E-value=2.9e-11 Score=97.08 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=48.9
Q ss_pred CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|++....... .....+ ..+-++|+||+|+.+......+.+++..+.. +.+++++|++++.|+++
T Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 79 QACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL--KLRFYRTSVKEDLNVSE 156 (168)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECBTTTTBSSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc--CCeEEEEecCCCCCHHH
Confidence 67888999875431111 111111 3456889999999764222334444444444 36899999999999999
Q ss_pred Hhccc
Q 023913 266 TLSIT 270 (275)
Q Consensus 266 l~~~~ 270 (275)
+++.+
T Consensus 157 l~~~l 161 (168)
T 1z2a_A 157 VFKYL 161 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 142
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=6.7e-10 Score=91.50 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=81.8
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHH
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~ 156 (275)
|..+.-.++|+|+.|+|||||++.+++-.. . .... + +++....
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~-----~--~~~~-t---------~~~~~~~-------------------- 54 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEV-----V--HTSP-T---------IGSNVEE-------------------- 54 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTTSC-----E--EEEC-C---------SCSSCEE--------------------
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcCCC-----C--cCcC-C---------CccceEE--------------------
Confidence 345577899999999999999999996421 1 0011 0 0100000
Q ss_pred HHHHHHHHhhcccccccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc---cc---cc---cccccCEEEEe
Q 023913 157 INLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVIN 224 (275)
Q Consensus 157 ~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlN 224 (275)
+ ........+.+++|+.....+.+.. ++..++++|.+....... .. .. .-..+-++|+|
T Consensus 55 --------~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 55 --------I-VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp --------E-EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred --------E-EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence 0 0011233444455543222222222 267889999876532211 00 01 12345588999
Q ss_pred cCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913 225 KTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 225 K~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
|+|+... ...+++.+.+... ..+.+++++|+++++|++++++.+
T Consensus 126 K~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 126 KQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp CTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 9999865 3344555554331 234589999999999999998764
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.01 E-value=1.6e-10 Score=109.79 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCcccc-ccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 193 DYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~-~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..++++|++........ ....+ ..+.++|+||+|+.+.. ..+ .+.++....+++++|+++++|++++++.+
T Consensus 305 D~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~--~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 305 DLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQ--LIT----SLEYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGG--GST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred CEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcch--hhH----HHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 678889998765432211 11111 24678899999998762 221 22333356789999999999999998754
No 144
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.00 E-value=3.1e-10 Score=93.17 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=81.2
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
.+.-.++|+|+.|+|||||++.+++-....- .+ + +++....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~-t---------~~~~~~~---------------------- 56 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTI-------SP-T---------LGFNIKT---------------------- 56 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSC-------CC-C---------SSEEEEE----------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcc-------cc-c---------CccceEE----------------------
Confidence 4567899999999999999999997421000 00 0 0000000
Q ss_pred HHHHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc---c---cccccCEEEEecC
Q 023913 159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG---P---GITQADLLVINKT 226 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~---~---~i~~adiivlNK~ 226 (275)
+ ........+.+++|+.+...+.+... +..++++|.+....... ... . .-..+-++|+||+
T Consensus 57 ------~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 129 (186)
T 1ksh_A 57 ------L-EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 129 (186)
T ss_dssp ------E-EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred ------E-EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCc
Confidence 0 00112233444555433222222222 67788899776432111 000 0 1234568999999
Q ss_pred CCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCCcCHHHHhccc
Q 023913 227 DLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 227 Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
|+.+. ...+++.+.+.. . ....+++++|+++++|++++++.+
T Consensus 130 Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 130 DLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp TSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred cCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence 99876 344455444431 1 235689999999999999998754
No 145
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.00 E-value=1.9e-10 Score=92.46 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=46.2
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|.+....... .....+ ..+-++|.||+|+.+......+......+.. +.+++++|++++.|++
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 80 AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI--HAIFVETSAKNAININ 157 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc--CCEEEEEeCCCCcCHH
Confidence 67788888765422111 110111 2234567899999764222233444444443 4689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 158 ~l~~~i 163 (170)
T 1z0j_A 158 ELFIEI 163 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 146
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.00 E-value=2.8e-10 Score=93.76 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=48.2
Q ss_pred CceEEEEeCCCCCCccc---c---ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---K---GGP---GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~---~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~ 260 (275)
+..++++|.+....... . ... .-..+-++|.||+|+... ...+.+.+.+.. . ....+++++||++|
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHHhCchhccCCceEEEEccCCCC
Confidence 67888999775422111 0 001 123456889999999865 233444444321 1 12457999999999
Q ss_pred cCHHHHhcccc
Q 023913 261 IGIIFTLSITH 271 (275)
Q Consensus 261 ~g~~~l~~~~~ 271 (275)
+|++++++.+.
T Consensus 163 ~gi~~l~~~l~ 173 (181)
T 1fzq_A 163 EGVQDGMNWVC 173 (181)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998653
No 147
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=3e-10 Score=92.44 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=53.1
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+.....+..... +..++++|++....... ..... -..+-++|+||+|+.+......+.+++.
T Consensus 63 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 142 (180)
T 2g6b_A 63 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 142 (180)
T ss_dssp EEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence 3445555443333333322 67888999876422111 00001 1344588999999986432233444444
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.. +.+++++|++++.|++++++.+
T Consensus 143 ~~~~--~~~~~~~Sa~~~~gi~~l~~~l 168 (180)
T 2g6b_A 143 AKEY--GLPFMETSAKTGLNVDLAFTAI 168 (180)
T ss_dssp HHHH--TCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 4443 4689999999999999998754
No 148
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.00 E-value=3e-11 Score=98.75 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913 67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (275)
Q Consensus 67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~ 118 (275)
+..++.+.++...+|++++|+||||||||||+++|+|++ |+ |.|.+.+.++
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 333444555566789999999999999999999999999 77 9998776655
No 149
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.99 E-value=5e-11 Score=96.71 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=45.2
Q ss_pred CceEEEEeCCCCCCccccc--cccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~--~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..++++|++......... ......+-++|.||+|+..... .+.+.+. +.+ +.+++++||++++|++++++
T Consensus 83 ~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 83 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KIL--GVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHH--TSCEEECBGGGTBSHHHHHH
T ss_pred CEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH---HHh--CCCEEEEEcCCCCCHHHHHH
Confidence 5677888987632211100 0112456688999999864311 1223332 222 36899999999999999987
Q ss_pred ccc
Q 023913 269 ITH 271 (275)
Q Consensus 269 ~~~ 271 (275)
.+.
T Consensus 158 ~l~ 160 (165)
T 2wji_A 158 AIS 160 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 150
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.99 E-value=6e-10 Score=89.22 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=56.0
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCccchhhHHHHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
..+.+++|+..--.+.+... +..++++|.+....... ... ..-..+-++|+||+|+... ...+.+.
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~ 123 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEIT 123 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHH
Confidence 34445555533223333322 67888999876522111 010 0113456889999999765 3334444
Q ss_pred HHHHhc---CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+.+... ....+++++|++++.|++++++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 124 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp HHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 433221 1245699999999999999987653
No 151
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.99 E-value=9.6e-11 Score=95.11 Aligned_cols=96 Identities=7% Similarity=0.069 Sum_probs=56.1
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc----------ccccCEEEEecCCCCccchhhHH
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG----------ITQADLLVINKTDLASAIGADLA 237 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~----------i~~adiivlNK~Dl~~~~~~~~~ 237 (275)
..+.+++|+.....+..... +..++++|.+....... ..... ...+-++|+||+|+.... ...+
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~ 136 (177)
T 1wms_A 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTE 136 (177)
T ss_dssp EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHH
T ss_pred EEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHH
Confidence 34445555443333333333 67788888765432110 00000 223558899999997431 2344
Q ss_pred HHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 238 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 238 ~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.+..+. ....+++++|++++.|++++++.+
T Consensus 137 ~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 137 EAQAWCRD-NGDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp HHHHHHHH-TTCCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHH
Confidence 45444443 346789999999999999998754
No 152
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=95.23 Aligned_cols=77 Identities=21% Similarity=0.052 Sum_probs=49.5
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .....+ ..+-+||+||+|+.+......+.+++..+.+ ...+++++|+++++|++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQI-TGMRFCEASAKDNFNVD 178 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS-TTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhc-CCCeEEEEeCCCCCCHH
Confidence 78899999876432211 000111 2445889999999764222334444444443 46789999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 179 ~l~~~l 184 (192)
T 2il1_A 179 EIFLKL 184 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 153
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.99 E-value=1.9e-10 Score=93.93 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=48.2
Q ss_pred CceEEEEeCCCCCCccc---cc---cc---cccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~ 260 (275)
+..++++|++....... .. .. ....+-++|+||+|+... ...+++.+.+... ....+++++|++++
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 57788899765532111 00 00 123456889999999765 3344454444321 12347999999999
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
+|++++++.+
T Consensus 165 ~gi~~l~~~l 174 (183)
T 1moz_A 165 EGITEGLDWL 174 (183)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999998765
No 154
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.99 E-value=2e-10 Score=94.31 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+.....+....+ +..|+++|++....... ..... -..+-++|+||+|+.+......+.+
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 150 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEA 150 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH
Confidence 344455555543333444433 67888999775432111 10001 1345588999999976422333444
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+..... +.+++++|++++.|++++++.+
T Consensus 151 ~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 151 RELAEKY--GIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp HHHHHHH--TCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHc--CCCEEEEECCCCCCHHHHHHHH
Confidence 4444444 3689999999999999998754
No 155
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.98 E-value=1.8e-10 Score=93.52 Aligned_cols=76 Identities=12% Similarity=-0.024 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCCCcc--ccccc-------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIP--RKGGP-------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~--~~~~~-------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+...... ..... .-..+-++|+||+|+.+......+...+..... +.+++++|++++.|+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH--HVAYFEASAKLRLNV 159 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc--CCeEEEecCCCCCCH
Confidence 7788888876532111 00000 113455889999999764222233333333332 578999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 160 ~~l~~~l 166 (181)
T 2fn4_A 160 DEAFEQL 166 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 156
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.98 E-value=2.6e-10 Score=94.34 Aligned_cols=76 Identities=16% Similarity=0.022 Sum_probs=47.9
Q ss_pred CceEEEEeCCCCCCccc--cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .... .-..+-++|+||+|+........+.+++..+.. +.+++++|+++++|++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN--GLLFLETSALDSTNVE 176 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEECTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence 66788888765422110 0000 113445889999999764222334444444443 5689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 177 ~l~~~l 182 (193)
T 2oil_A 177 LAFETV 182 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 157
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.98 E-value=1.9e-10 Score=92.65 Aligned_cols=76 Identities=17% Similarity=0.034 Sum_probs=49.3
Q ss_pred CceEEEEeCCCCCCc---ccccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKI---PRKGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~---~~~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+..... ....... -..+-++|+||+|+.+......+...+..+.. +.+++++|+++++|+
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL--SCKHIETSAALHHNT 154 (169)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc--CCcEEEecCccCCCH
Confidence 788899997653211 1111000 13456889999999754333444555455444 468999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 155 ~~l~~~l 161 (169)
T 3q85_A 155 RELFEGA 161 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 158
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.98 E-value=5.4e-10 Score=89.97 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=48.5
Q ss_pred CceEEEEeCCCCCCccc---cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGP------GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~ 260 (275)
+..++++|++....... .... .-..+-++|+||+|+.+. ...+++.+.+.. . ....+++++|++++
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKG 153 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHHhCchhccCCceEEEECcCCCC
Confidence 67888999776532211 1100 123455889999999876 334445444432 1 12457999999999
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
+|++++++.+
T Consensus 154 ~gi~~l~~~l 163 (171)
T 1upt_A 154 TGLDEAMEWL 163 (171)
T ss_dssp TTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999998765
No 159
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.98 E-value=2e-10 Score=92.17 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|++....... .....+ ..+-++|.||+|+.+......+.+.+..+.. +.+++++|+++++|++
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 80 QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN--SLLFMETSAKTSMNVN 157 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHH
Confidence 67888889765421111 110111 2334566799999754223334444444443 4789999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++.+.
T Consensus 158 ~l~~~i~ 164 (170)
T 1r2q_A 158 EIFMAIA 164 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 160
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.97 E-value=3.7e-12 Score=107.71 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=30.1
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d 117 (275)
..+|++++|+|+||||||||+++|+|++.| .+.++..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d 40 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMD 40 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecC
Confidence 356899999999999999999999998765 45555443
No 161
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=1.1e-09 Score=90.58 Aligned_cols=75 Identities=13% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CceEEEEeCCCCCCccc--ccc---c-----cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913 193 DYIIYIIDVSGGDKIPR--KGG---P-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 262 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~---~-----~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g 262 (275)
+..++++|.+....... ... . .-..+-++|+||+|+.... ...+...+..+.. +.+++++|++++.|
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTREAQAVAQEW--KCAFMETSAKMNYN 157 (199)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHHHHHHHHHH--TCEEEECBTTTTBS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHHHHHHHHHh--CCeEEEEecCCCCC
Confidence 78899999765321110 000 0 0134558899999997642 2233344444443 35899999999999
Q ss_pred HHHHhccc
Q 023913 263 IIFTLSIT 270 (275)
Q Consensus 263 ~~~l~~~~ 270 (275)
++++++.+
T Consensus 158 i~~l~~~l 165 (199)
T 2gf0_A 158 VKELFQEL 165 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 162
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=94.87 Aligned_cols=77 Identities=16% Similarity=0.058 Sum_probs=48.5
Q ss_pred CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|++....... .....+ ..+-++|+||+|+.+......+......... +.+++++|++++.|+++
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM--GIQLFETSAKENVNVEE 160 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCCEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc--CCeEEEEECCCCCCHHH
Confidence 67788888765422111 111111 2344889999998765323334444444444 36899999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
+++.+.
T Consensus 161 l~~~l~ 166 (181)
T 3tw8_B 161 MFNCIT 166 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 163
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.97 E-value=7.2e-10 Score=90.68 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=47.3
Q ss_pred CceEEEEeCCCCCCccc--cc-------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR--KG-------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~-------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+....... .. ...-..+-++|+||+|+.+.. ...+.+.+..+.. +.+++++|++++.|+
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTKQAQDLARSY--GIPFIETSAKTRQGV 153 (189)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHHHHHHHHHHH--TCCEEECCTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHHHHHHHHHHc--CCeEEEEeCCCCCCH
Confidence 77888888765321100 00 011134568899999997542 2334444444444 368999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 154 ~~l~~~l 160 (189)
T 4dsu_A 154 DDAFYTL 160 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 164
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.97 E-value=2.7e-10 Score=101.38 Aligned_cols=60 Identities=7% Similarity=-0.173 Sum_probs=45.2
Q ss_pred CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEeccCCCCChHHHHHhcc
Q 023913 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNG 131 (275)
Q Consensus 69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~~d~~~~~~~~~~~~ig 131 (275)
+++.+...-..+|++++|+|+||||||||++.|++.+.++ | ++.+++.+. ...++.+++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~ 84 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLI 84 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHH
Confidence 3455555446779999999999999999999999998887 7 788887654 2344444443
No 165
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.97 E-value=8.1e-11 Score=98.53 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=57.1
Q ss_pred ccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHH
Q 023913 172 DLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
...+.+++|+.....+.... ++..|+++|.+....... ..... -..+-++|+||+|+........++..
T Consensus 75 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 154 (200)
T 2o52_A 75 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS 154 (200)
T ss_dssp EEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHH
Confidence 44455666654332222222 267889999876432111 11011 13345889999999754222334444
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..+.. +.+++++|++++.|+++++..+
T Consensus 155 ~~~~~~--~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 155 RFAQEN--ELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp HHHHHT--TCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence 444443 4789999999999999998754
No 166
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.97 E-value=7.2e-10 Score=103.36 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=60.5
Q ss_pred cccccccChhHHHHHHHH-HHh--cCceEEEEeCCCCC-Cccccc----cccccc-cCEEEEecCCCCccch--hhHHHH
Q 023913 171 ADLLLCESGGDNLAANFS-REL--ADYIIYIIDVSGGD-KIPRKG----GPGITQ-ADLLVINKTDLASAIG--ADLAVM 239 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~la-ral--~~~~vlllD~t~g~-d~~~~~----~~~i~~-adiivlNK~Dl~~~~~--~~~~~~ 239 (275)
....+.+++|..+-.... +.+ ++..|+++|++.+. ..+... ...+.. +-++++||+|+.+... ...+++
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH
Confidence 345566777754432222 222 28889999988775 222111 111222 3477899999987621 122333
Q ss_pred HHHHHhcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913 240 ERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 240 ~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.+.... ...+++++|+++|.|++++++.+.
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 33333333 367899999999999999988653
No 167
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.97 E-value=1.2e-09 Score=104.19 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=64.1
Q ss_pred cccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhH----HHH
Q 023913 171 ADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADL----AVM 239 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~----~~~ 239 (275)
....+.+++|..+....... +. +..|+++|++.+...+... ...+..+-++++||+|+.+. ... +++
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~--~~~~~~~~~l 150 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEMIM 150 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc--hhHHHHHHHH
Confidence 45567778887654333322 22 7899999998875433221 12234566999999999875 333 333
Q ss_pred HHHHHhc--CCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~--~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.++.. .+..+++++|+++|.|++++++.+
T Consensus 151 ~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L 183 (482)
T 1wb1_A 151 KSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 183 (482)
T ss_dssp HHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhhhcccccceEEEEECcCCCCHHHHHHHH
Confidence 4444432 236789999999999999998754
No 168
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.97 E-value=1.2e-10 Score=94.89 Aligned_cols=76 Identities=18% Similarity=0.058 Sum_probs=48.3
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|++....... .....+ ..+-++|+||+|+.+......+.+++..+.. +.+++++|+++++|++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN--GLFFMETSAKTATNVK 163 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEECCSSSCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc--CCEEEEEECCCCCCHH
Confidence 67888889765422110 110111 2345788999999764323344555554443 4689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 164 ~l~~~l 169 (181)
T 2efe_B 164 EIFYEI 169 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998854
No 169
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.97 E-value=6.5e-10 Score=88.48 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCcc--cccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIP--RKGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~--~~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|++...... ...... -..+-++|+||+|+.+.. ...+.+.+..++. +.+++++|++++.|+
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VESRQAQDLARSY--GIPYIETSAKTRQGV 152 (166)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHHHHHHHHH--TCCEEEECTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCHHHHHHHHHHc--CCeEEEecCCCCCCH
Confidence 7788888976432111 000011 134558899999997642 2334444444443 358999999999999
Q ss_pred HHHhcccc
Q 023913 264 IFTLSITH 271 (275)
Q Consensus 264 ~~l~~~~~ 271 (275)
+++++.+.
T Consensus 153 ~~l~~~l~ 160 (166)
T 2ce2_X 153 EDAFYTLV 160 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 170
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.96 E-value=3.4e-10 Score=93.44 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=56.9
Q ss_pred ccccccChhHHHHH-HHHHHhc---CceEEEEeCCCCCCccc---cc---cc---cccccCEEEEecCCCCccchhhHHH
Q 023913 172 DLLLCESGGDNLAA-NFSRELA---DYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAV 238 (275)
Q Consensus 172 d~~~~eS~G~~q~~-~laral~---~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlNK~Dl~~~~~~~~~~ 238 (275)
...+.+++|+.+-. .+..... +..|+++|.+....... .. .. ....+-++|+||+|+.+......+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 149 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL 149 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHH
Confidence 34445566654322 3333332 67889999875321110 00 00 1134558899999997642223344
Q ss_pred HHHHHHhcCCCCCEEEEEecCC---cCHHHHhcccc
Q 023913 239 MERDALRMRDGGPFIFAQVGWV---IGIIFTLSITH 271 (275)
Q Consensus 239 ~~~~i~~~~~~~~ii~~S~~~~---~g~~~l~~~~~ 271 (275)
+++..+.. +.+++++|++++ +++++++..+.
T Consensus 150 ~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l~~~l~ 183 (189)
T 1z06_A 150 AQKFADTH--SMPLFETSAKNPNDNDHVEAIFMTLA 183 (189)
T ss_dssp HHHHHHHT--TCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred HHHHHHHc--CCEEEEEeCCcCCcccCHHHHHHHHH
Confidence 44433333 468999999999 99999987653
No 171
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.96 E-value=1.3e-10 Score=95.17 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=55.7
Q ss_pred ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccc---c---cccccCEEEEecCCCCccchhhHHHHHHH
Q 023913 174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGG---P---GITQADLLVINKTDLASAIGADLAVMERD 242 (275)
Q Consensus 174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~---~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~ 242 (275)
.+.+++|+.....+..... +..|+++|++....... ... . .-..+-++|+||+|+........++..+.
T Consensus 62 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 141 (186)
T 2bme_A 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141 (186)
T ss_dssp EEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 3444555443333333333 67788899776422111 000 0 11334588999999975422333444444
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+.. +.+++++|+++++|+++++..+
T Consensus 142 ~~~~--~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 142 AQEN--ELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp HHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHc--CCEEEEecCCCCCCHHHHHHHH
Confidence 4443 4789999999999999998754
No 172
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.96 E-value=7.9e-11 Score=110.52 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCCCCccccccccCCCcE--EEEEcCCcchHHHHHHHHHhcc
Q 023913 65 FSRRAPPILSRNFNERAFT--VGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 65 ~~~~~~~~~~~~~~~~gei--v~IiG~nGaGKTTLl~~L~g~l 105 (275)
|++.. +.+.++...+|++ ++|+|+||||||||||+|+|+.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 33444 5555566677999 9999999999999999999983
No 173
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.96 E-value=2.5e-10 Score=92.50 Aligned_cols=77 Identities=18% Similarity=0.106 Sum_probs=48.5
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|++....... .....+ ..+-++|+||+|+.+......+......+.. +.+++++|++++.|++
T Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 88 TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAKAGYNVK 165 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEEEBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc--CCeEEEEeCCCCCCHH
Confidence 67888999765321110 110111 2344889999999764322334444444444 4689999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
++++.+.
T Consensus 166 ~l~~~l~ 172 (179)
T 2y8e_A 166 QLFRRVA 172 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 174
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.96 E-value=1.9e-11 Score=107.91 Aligned_cols=73 Identities=23% Similarity=0.181 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCCcccccc--cccc-ccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913 193 DYIIYIIDVSGGDKIPRKGG--PGIT-QADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~~--~~i~-~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~ 267 (275)
+..++++|+++......... .... .+-++|+||+|+.+... ...+.+.+.+ +.+++++|++++.|+++++
T Consensus 83 d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 83 DVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-----GVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-----SSCEEECBGGGTBTHHHHH
T ss_pred cEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc-----CCcEEEEEeCCCCCHHHHH
Confidence 67788888876532111110 1123 66789999999865421 2233343333 4789999999999999998
Q ss_pred ccc
Q 023913 268 SIT 270 (275)
Q Consensus 268 ~~~ 270 (275)
+.+
T Consensus 158 ~~i 160 (271)
T 3k53_A 158 RMI 160 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 175
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.96 E-value=4.4e-10 Score=94.18 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=57.9
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
...+.+++|+.+-..+....+ +..|+++|.+....... ..... -..+-+||+||+|+........+.++
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 158 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQ 158 (201)
T ss_dssp EEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHH
Confidence 344555666543333333332 67888999765322111 11111 12345788999999764223344555
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..+..+ ..+++++|+++++|++++++.+
T Consensus 159 ~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 159 SLAEHYD-ILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp HHHHHTT-CSEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHcC-CCEEEEEeCCCCCCHHHHHHHH
Confidence 5554442 2389999999999999998864
No 176
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.96 E-value=2.8e-10 Score=90.80 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=46.2
Q ss_pred CceEEEEeCCCCCCcccc-cc---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~-~~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..++++|.+........ .. .....+-++|+||+|+.+.. .. +.+. .++ ...+++++|++++.|++++++
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~---~~~~-~~~-~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-LY---LGPL-YGL-GFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-GG---CGGG-GGG-SSCSCEECBTTTTBSHHHHHH
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-Hh---HHHH-HhC-CCCCeEEEecccCCChHHHHH
Confidence 678889998775432211 11 11245668999999997651 12 1111 222 223799999999999999987
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 155 ~l 156 (161)
T 2dyk_A 155 AI 156 (161)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 177
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.95 E-value=4.4e-10 Score=93.52 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=80.3
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHH
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~ 156 (275)
+..+.-.++|+|+.|+|||||++.+++-.. . ...+ .+++....
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~-----~--~~~~----------t~~~~~~~-------------------- 67 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIP----------TIGFNVET-------------------- 67 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCC-----E--EEEE----------ETTEEEEE--------------------
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCc-----c--ccCC----------cCceeEEE--------------------
Confidence 445567899999999999999999975311 0 0000 01110000
Q ss_pred HHHHHHHHhhcccccccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--c-cc------ccccccCEEEEe
Q 023913 157 INLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--K-GG------PGITQADLLVIN 224 (275)
Q Consensus 157 ~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~-~~------~~i~~adiivlN 224 (275)
+ ........+.+++|+.+-..+.+.. ++..++++|.+....... . .. ..-..+-++|+|
T Consensus 68 --------~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 138 (192)
T 2b6h_A 68 --------V-EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138 (192)
T ss_dssp --------E-EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred --------E-EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence 0 0011233444556643322222222 277889999876532111 0 00 011345688999
Q ss_pred cCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 225 KTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 225 K~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
|+|+... ...+++.+.+... ....+++++|++++.|++++++.+.
T Consensus 139 K~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 139 KQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp CTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 9999765 3344454443321 1245799999999999999988653
No 178
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.95 E-value=1.5e-10 Score=93.12 Aligned_cols=75 Identities=20% Similarity=0.086 Sum_probs=46.8
Q ss_pred CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..++++|++....... ..... -..+-++|+||+|+.... ...+...+..++. +.+++++|++++.|++
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 77 MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKEL--GIPFIESSAKNDDNVN 153 (170)
T ss_dssp EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHHH--TCCEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCHHHHHHHHHHc--CCeEEEEECCCCCCHH
Confidence 67788899775422111 11011 133458899999995431 2334444444444 3689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 154 ~l~~~l 159 (170)
T 1g16_A 154 EIFFTL 159 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 179
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.95 E-value=5.8e-11 Score=98.51 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=39.3
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
..+|++++|+||||||||||+++|++. ++ |.|.+.+.++..... ..+.++|++|..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~ 62 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSH 62 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchh
Confidence 356999999999999999999999997 55 777776644321100 012357777754
No 180
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.95 E-value=2.9e-10 Score=94.89 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=54.3
Q ss_pred cccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCcc------chhh
Q 023913 173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASA------IGAD 235 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~------~~~~ 235 (275)
..+.+++|+.....+.... ++..|+++|++....... .....+ ..+-+||+||+|+... ....
T Consensus 79 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~ 158 (199)
T 2p5s_A 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVP 158 (199)
T ss_dssp EEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCC
T ss_pred EEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccC
Confidence 3444555543322222222 278899999875432111 110111 3456889999999632 1112
Q ss_pred HHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 236 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 236 ~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
.+..++..+.. +.+++++|+++++|+++++..+
T Consensus 159 ~~~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 159 GHFGEKLAMTY--GALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp HHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHH
Confidence 23333333443 4689999999999999998754
No 181
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.94 E-value=2.4e-10 Score=96.25 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=21.4
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
...++|+|+.|+|||||++.+++-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999975
No 182
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.94 E-value=2.2e-10 Score=94.85 Aligned_cols=76 Identities=16% Similarity=0.037 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .....+ ..+-+||+||+|+.+......+.+++..+.. +.+++++|+++++|++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH--GLIFMETSAKTACNVE 172 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEEECTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence 67888999875432111 110111 2345788999999754222334444444444 4689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 173 ~l~~~l 178 (191)
T 2a5j_A 173 EAFINT 178 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 183
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.94 E-value=1.3e-09 Score=89.78 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=52.6
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+.....+....+ +..++++|.+....... ..... -..+-++|+||+|+.+.. ...+.+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~ 148 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VDTKQA 148 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHH
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CCHHHH
Confidence 344555666543333333333 67788888765421110 00001 124558899999997631 233444
Q ss_pred HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
++..++. +.+++++|++++.|++++++.+
T Consensus 149 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 149 HELAKSY--GIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp HHHHHHH--TCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 4444444 3589999999999999998754
No 184
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.94 E-value=3.2e-10 Score=93.68 Aligned_cols=77 Identities=17% Similarity=0.095 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCCCccc---ccc-----cc---ccccCEEEEecCCCCccchhhHHHHHHHHH--hcC-CCCCEEEEEec
Q 023913 193 DYIIYIIDVSGGDKIPR---KGG-----PG---ITQADLLVINKTDLASAIGADLAVMERDAL--RMR-DGGPFIFAQVG 258 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~-----~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~~~-~~~~ii~~S~~ 258 (275)
+..++++|.+....... ... .. -..+-++|+||+|+... ...+++.+.+. .+. .+.+++++|++
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 67788888765421110 000 00 13456889999999865 34455555553 222 35689999999
Q ss_pred CCcCHHHHhcccc
Q 023913 259 WVIGIIFTLSITH 271 (275)
Q Consensus 259 ~~~g~~~l~~~~~ 271 (275)
++.|++++++.+.
T Consensus 170 ~~~gi~~l~~~l~ 182 (190)
T 2h57_A 170 KGEGLQEGVDWLQ 182 (190)
T ss_dssp TTBTHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 9999999987653
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.94 E-value=1.1e-10 Score=97.31 Aligned_cols=52 Identities=19% Similarity=0.053 Sum_probs=36.3
Q ss_pred cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+-++++||+|+........+..++... .|...++.+|++++.+++++++.+.
T Consensus 136 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~--~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 136 VIMLVGNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred cEEEEEECcccccccccCHHHHHHHHH--HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 457889999997542223333433333 3567899999999999999988653
No 186
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=2.2e-10 Score=96.53 Aligned_cols=76 Identities=13% Similarity=-0.040 Sum_probs=46.7
Q ss_pred CceEEEEeCCCCCCcc--cccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIP--RKGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~--~~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+...... ...... -..+-++|+||+|+.+......+.+++..+.. +.+++++|+++++|++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ--DMYYLETSAKESDNVE 177 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence 6778888976542211 000011 12345788999999754222233444433333 4689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 178 ~l~~~l 183 (201)
T 2ew1_A 178 KLFLDL 183 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 187
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.94 E-value=1.2e-10 Score=97.26 Aligned_cols=76 Identities=18% Similarity=0.054 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... ..... -..+-++|+||+|+........+.+.+..+.+ +.+++++|++++.|++
T Consensus 82 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 82 MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--GFEFFEASAKDNINVK 159 (203)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--TCEEEECBTTTTBSSH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence 67788889765422110 01011 13455889999999764323334444444444 3589999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 160 ~l~~~l 165 (203)
T 1zbd_A 160 QTFERL 165 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 188
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.94 E-value=8.8e-10 Score=100.83 Aligned_cols=195 Identities=16% Similarity=0.114 Sum_probs=100.6
Q ss_pred CCCcceeecCCCCccccCCCCCCCccccccCCC----CCCC-CCCcc--ccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913 31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG----YFSR-RAPPI--LSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~-~~~~~--~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g 103 (275)
..-+..+.++..+...-..+..|..+..|..+- +|.. .++-. ....-.+--..++|+|++|||||||++.|++
T Consensus 101 ~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 101 KQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEE
T ss_pred CcEehhhhcCCcEEEEeCCCCCccCccccccccccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHc
Confidence 344556666666667777777777666665543 0000 00000 0000111134689999999999999999987
Q ss_pred ccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHH
Q 023913 104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL 183 (275)
Q Consensus 104 ~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q 183 (275)
.-+ .+....+.+..+ .++.+. ........+.+++|+..
T Consensus 181 ~~~-----~i~~~~ftTl~p-----~~g~v~--------------------------------~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 181 AKP-----KIADYHFTTLVP-----NLGMVE--------------------------------TDDGRSFVMADLPGLIE 218 (342)
T ss_dssp ECC-----EESSTTSSCCCC-----CEEEEE--------------------------------CSSSCEEEEEEHHHHHH
T ss_pred CCC-----ccccCCccccCc-----eEEEEE--------------------------------eCCCceEEEecCCCCcc
Confidence 521 121111111111 011100 00001122222333211
Q ss_pred --------HHHHHHHh--cCceEEEEeCCCC--CCccc----------ccc-ccccccCEEEEecCCCCccchhhHHHHH
Q 023913 184 --------AANFSREL--ADYIIYIIDVSGG--DKIPR----------KGG-PGITQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 184 --------~~~laral--~~~~vlllD~t~g--~d~~~----------~~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
...+.+.+ ++..|+++|.+.. .+... .+. .....+-+||+||+|+... . +.++
T Consensus 219 ~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~--e~~~ 294 (342)
T 1lnz_A 219 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A--ENLE 294 (342)
T ss_dssp HTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H--HHHH
T ss_pred cccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H--HHHH
Confidence 11122322 3778899998652 11111 010 1124566899999999864 1 2233
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+..+.+....+++++|+++++|+++++..+.
T Consensus 295 ~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~ 325 (342)
T 1lnz_A 295 AFKEKLTDDYPVFPISAVTREGLRELLFEVA 325 (342)
T ss_dssp HHHHHCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence 3334444346899999999999999987653
No 189
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.93 E-value=4.6e-11 Score=98.69 Aligned_cols=76 Identities=18% Similarity=0.084 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|++....... .....+ ..+-++|+||+|+.+......+.+++..+.. +.+++++|+++++|++
T Consensus 96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--GFEFFEASAKENINVK 173 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc--CCeEEEEECCCCCCHH
Confidence 67788888765422111 111111 2345889999999764322334444444444 3689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 174 ~l~~~l 179 (189)
T 2gf9_A 174 QVFERL 179 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 190
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=6.7e-10 Score=92.26 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCcc--cc-c---c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc-C
Q 023913 193 DYIIYIIDVSGGDKIP--RK-G---G---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI-G 262 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~--~~-~---~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~-g 262 (275)
+..++++|++...... .. . . ..-..+-++|+||+|+........+...+..+.. +.+++++|+++++ |
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL--ACAFYECSACTGEGN 177 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSEEEECCTTTCTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh--CCeEEEECCCcCCcC
Confidence 7888999977532110 00 0 0 0113345889999999764222334444444444 4689999999999 9
Q ss_pred HHHHhccc
Q 023913 263 IIFTLSIT 270 (275)
Q Consensus 263 ~~~l~~~~ 270 (275)
++++++.+
T Consensus 178 i~~l~~~l 185 (196)
T 2atv_A 178 ITEIFYEL 185 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 191
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.93 E-value=1.8e-09 Score=97.96 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=93.8
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHH-----HHhcccc-CchhHHHHHhcCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF-----LMRNGAL-PEERIRAVETGGC 146 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~-----~~~ig~v-~q~~~~~~~~~~~ 146 (275)
..++++++|+|+||+||||++..|++.+.+. ++|.+.+.|+..... ..+ +..++++ +|..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~--------- 172 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL--------- 172 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST---------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC---------
Confidence 4569999999999999999999999999887 899999988753211 112 1234444 2221
Q ss_pred CccchHHHHHHHHHHHHHhhcccccccccccChhHHHH--------HHHHHHh---c----CceEEEEeCCCCCCccccc
Q 023913 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA--------ANFSREL---A----DYIIYIIDVSGGDKIPRKG 211 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~--------~~laral---~----~~~vlllD~t~g~d~~~~~ 211 (275)
..... ....+.+... ....+|++++++.|..+. ..+.+.+ . +..++++|++.+.+.....
T Consensus 173 -~~~p~---~~~~~~l~~~-~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~ 247 (320)
T 1zu4_A 173 -NADPA---SVVFDAIKKA-KEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQA 247 (320)
T ss_dssp -TCCHH---HHHHHHHHHH-HHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHH
T ss_pred -CCCHH---HHHHHHHHHH-HhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHH
Confidence 00000 0112223222 245689999996663221 1111222 1 3347888877653322111
Q ss_pred ccccc-c--cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913 212 GPGIT-Q--ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 212 ~~~i~-~--adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~ 267 (275)
. .+. . -.-+|+||.|.....+ .+....... +.||.++. .|+.++++.
T Consensus 248 ~-~~~~~~~i~GvVltk~d~~~~~g----~~~~~~~~~--~~Pi~~i~--~Ge~~~dl~ 297 (320)
T 1zu4_A 248 E-EFSKVADVSGIILTKMDSTSKGG----IGLAIKELL--NIPIKMIG--VGEKVDDLL 297 (320)
T ss_dssp H-HHTTTSCCCEEEEECGGGCSCTT----HHHHHHHHH--CCCEEEEE--CSSSTTCEE
T ss_pred H-HHhhcCCCcEEEEeCCCCCCchh----HHHHHHHHH--CcCEEEEe--CCCCccccc
Confidence 1 111 1 2358999999755422 222333333 47787776 477776543
No 192
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.93 E-value=3.1e-10 Score=94.63 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCccc--ccccc----------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~----------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~ 260 (275)
+..|+++|.+....... ..... -..+-++|+||+|+.... ...+.+.+.... ....+++++|++++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 82 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKRAQAWCYS-KNNIPYFETSAKEA 159 (207)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHHHHHHHHH-TTSCCEEECBTTTT
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHHHHHHHHh-cCCceEEEEeCCCC
Confidence 67788888765421110 00000 134558899999997431 233444443332 45678999999999
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
.|++++++.+
T Consensus 160 ~gi~~l~~~l 169 (207)
T 1vg8_A 160 INVEQAFQTI 169 (207)
T ss_dssp BSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998754
No 193
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.93 E-value=2.6e-09 Score=100.65 Aligned_cols=169 Identities=15% Similarity=0.221 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--h-HHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--I-REDI 155 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~-~~~~ 155 (275)
+..+++++|++||||||++..|+..+... .++.++..|.......+..+.. ....+.++.. . ....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~----------~~~~gvpv~~~~~~~dp~ 168 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQL----------LDRYHIEVFGNPQEKDAI 168 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHH----------HGGGTCEEECCTTCCCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHH----------HHhcCCcEEecCCCCCHH
Confidence 47899999999999999999999988776 6888888876543211111110 0011111110 0 0111
Q ss_pred HHHHHHHHHhhcccccccccccChhHH--------HHHHHHHHhc-CceEEEEeCCCCCCcccccccccc---ccCEEEE
Q 023913 156 SINLGPLEELSNLFKADLLLCESGGDN--------LAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT---QADLLVI 223 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~--------q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~---~adiivl 223 (275)
....++++.+ ....+|.+++++.|.. ....+.++.. +..++++|++.+.+..... ..|. ....||+
T Consensus 169 ~i~~~al~~a-~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a-~~f~~~~~i~gVIl 246 (443)
T 3dm5_A 169 KLAKEGVDYF-KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA-LAFKEATPIGSIIV 246 (443)
T ss_dssp HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHSCTTEEEEE
T ss_pred HHHHHHHHHH-HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH-HHHHhhCCCeEEEE
Confidence 1122344443 2345899999977631 1122222332 5689999998876543221 1121 2346899
Q ss_pred ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
||+|.....+..+ ..... -+.||.+++. |+++++|-.
T Consensus 247 TKlD~~~~gG~~l----s~~~~--~g~PI~fig~--Ge~vddL~~ 283 (443)
T 3dm5_A 247 TKLDGSAKGGGAL----SAVAA--TGAPIKFIGT--GEKIDDIEP 283 (443)
T ss_dssp ECCSSCSSHHHHH----HHHHT--TCCCEEEEEC--SSSTTCEEE
T ss_pred ECCCCcccccHHH----HHHHH--HCCCEEEEEc--CCChHHhhh
Confidence 9999986632222 22222 3678998885 888876654
No 194
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.92 E-value=5.8e-11 Score=104.32 Aligned_cols=73 Identities=23% Similarity=0.160 Sum_probs=47.3
Q ss_pred CceEEEEeCCCCCCccc--cccccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..|+++|+++...... .....+..+-++|+||+|+..... ...+.+.+.+ +.+++++|+++++|++++++
T Consensus 85 d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 85 DCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL-----GCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH-----CSCEEECBGGGTBSHHHHHH
T ss_pred CEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-----CCCEEEEECCCCCCHHHHHH
Confidence 67788889776211100 011223567789999999875421 2333343333 47899999999999999987
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 160 ~i 161 (256)
T 3iby_A 160 SL 161 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.92 E-value=3.5e-10 Score=95.68 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=39.8
Q ss_pred cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH
Q 023913 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (275)
Q Consensus 76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~ 141 (275)
....+|++++|+||||||||||+++|+|+++.- +.+.+...+.. ...++.++|++|++..+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~----~~~~~~i~~~~q~~~~~~ 77 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPR----PGEVDGVDYHFIDPTRFQ 77 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCC----TTCCBTTTBEECCHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCc----ccccCCCeeEecCHHHHH
Confidence 355779999999999999999999999998522 22222111111 112356899999875443
No 196
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.92 E-value=2.3e-10 Score=93.39 Aligned_cols=76 Identities=13% Similarity=-0.055 Sum_probs=47.6
Q ss_pred CceEEEEeCCCCCCccc---c---c---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR---K---G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~---~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+....... . . ...-..+-++|+||+|+........+.+++..+.. +.+++++|++++.|+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW--NAAFLESSAKENQTA 156 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEECCTTSHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh--CCcEEEEecCCCCCH
Confidence 56788888765321110 0 0 00113456889999999755333445555555554 468999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
++++..+
T Consensus 157 ~~l~~~l 163 (181)
T 3t5g_A 157 VDVFRRI 163 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 197
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.92 E-value=8.5e-10 Score=90.48 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCCccc---ccc---c---cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KGG---P---GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~---~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~ 260 (275)
+..++++|.+....... ... . .-..+-++|+||+|+... ...+++.+.+.. . ....+++++|++++
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 67888999876532211 010 1 123345888999999765 233445444321 1 12457999999999
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
+|++++++.+
T Consensus 168 ~gi~~l~~~l 177 (181)
T 2h17_A 168 EGLCQGLEWM 177 (181)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999998765
No 198
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.91 E-value=3.9e-10 Score=91.55 Aligned_cols=76 Identities=16% Similarity=0.036 Sum_probs=47.5
Q ss_pred CceEEEEeCCCCCCccc--cccccc--------ccc-CEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI--------TQA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i--------~~a-diivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~ 261 (275)
+..++++|++....... .....+ ..+ -++|+||+|+.+......+.+.+..+.. +.+++++|++++.
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN--GFSSHFVSAKTGD 158 (178)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEEECTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc--CCcEEEEeCCCCC
Confidence 77889999876432111 110111 233 3678999999764222234444444443 3689999999999
Q ss_pred CHHHHhccc
Q 023913 262 GIIFTLSIT 270 (275)
Q Consensus 262 g~~~l~~~~ 270 (275)
|++++++.+
T Consensus 159 gi~~l~~~l 167 (178)
T 2hxs_A 159 SVFLCFQKV 167 (178)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998765
No 199
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.91 E-value=1.7e-10 Score=96.06 Aligned_cols=97 Identities=20% Similarity=0.093 Sum_probs=51.1
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc---------ccccCEEEEecCCCCc-cchhhH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG---------ITQADLLVINKTDLAS-AIGADL 236 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~---------i~~adiivlNK~Dl~~-~~~~~~ 236 (275)
...+.+++|+..-..+..... +..|+++|.+....... ..... -..+-++|+||+|+.. ......
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~ 153 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRL 153 (208)
T ss_dssp EEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCH
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCH
Confidence 445566777655444444443 67888999876432111 11111 1334588999999986 322334
Q ss_pred HHHHHHHHhcCCCCCEEEEEecC-CcCHHHHhccc
Q 023913 237 AVMERDALRMRDGGPFIFAQVGW-VIGIIFTLSIT 270 (275)
Q Consensus 237 ~~~~~~i~~~~~~~~ii~~S~~~-~~g~~~l~~~~ 270 (275)
+.+.+..+.++ .+++++|+++ +.|++++++.+
T Consensus 154 ~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 154 DMAQDWATTNT--LDFFDVSANPPGKDADAPFLSI 186 (208)
T ss_dssp HHHHHHHHHTT--CEEEECCC-------CHHHHHH
T ss_pred HHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHH
Confidence 55555555553 7899999999 99999998754
No 200
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.91 E-value=1.2e-10 Score=97.54 Aligned_cols=76 Identities=21% Similarity=0.058 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|++....... ..... -..+-+||+||+|+.+......+.+.+..... +.+++++|++++.|++
T Consensus 82 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 82 HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN--KMPFLETSALDSTNVE 159 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCCEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHH
Confidence 67788899876432111 00001 12345889999999864223334444444443 4689999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 160 ~l~~~l 165 (206)
T 2bcg_Y 160 DAFLTM 165 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 201
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=1e-09 Score=90.31 Aligned_cols=75 Identities=20% Similarity=0.082 Sum_probs=47.0
Q ss_pred CceEEEEeCCCCCCccc--c----cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR--K----GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~----~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..|+++|++....... . .... -..+-++|+||+|+.... ...+...+..+.. +.+++++|++++.|+
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNEGLKFARKH--SMLFIEASAKTCDGV 165 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHHHHHHHHHT--TCEEEECCTTTCTTH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCHHHHHHHHHHc--CCEEEEecCCCCCCH
Confidence 67888899765421110 0 0010 123457899999996432 2234444444443 468999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 166 ~~l~~~l 172 (195)
T 1x3s_A 166 QCAFEEL 172 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 202
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.90 E-value=1.2e-09 Score=100.70 Aligned_cols=55 Identities=13% Similarity=-0.055 Sum_probs=36.8
Q ss_pred ccCEEEEecCCCCccchhh-HHHHHHHHHhc-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 217 QADLLVINKTDLASAIGAD-LAVMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 217 ~adiivlNK~Dl~~~~~~~-~~~~~~~i~~~-~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+-++|.||+|+.+..... .+.+.+..+.+ .+..+++++|+++++|++++++.+.
T Consensus 293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIY 349 (364)
T ss_dssp CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHH
Confidence 4568899999998752111 12222223444 4445789999999999999987653
No 203
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.90 E-value=1.5e-10 Score=92.96 Aligned_cols=77 Identities=14% Similarity=-0.087 Sum_probs=46.4
Q ss_pred CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCcc---chhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASA---IGADLAVMERDALRMRDGGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~---~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~ 261 (275)
+..++++|++....... ..... -..+-++|+||+|+.+. .....+..++..+.. +.+++++|++++.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 77 QAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK--GLLFFETSAKTGE 154 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH--TCEEEECCTTTCT
T ss_pred cEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc--CCEEEEEeCCCCC
Confidence 67788888775421110 00001 13345788999999754 112223333333333 4689999999999
Q ss_pred CHHHHhcccc
Q 023913 262 GIIFTLSITH 271 (275)
Q Consensus 262 g~~~l~~~~~ 271 (275)
|++++++.+.
T Consensus 155 gi~~l~~~l~ 164 (170)
T 1ek0_A 155 NVNDVFLGIG 164 (170)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988653
No 204
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.90 E-value=4.5e-09 Score=86.84 Aligned_cols=78 Identities=5% Similarity=-0.001 Sum_probs=48.5
Q ss_pred cCceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCc--cchhhHHHHHHHHHhcCCCCCEEEEEecCC
Q 023913 192 ADYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLAS--AIGADLAVMERDALRMRDGGPFIFAQVGWV 260 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~--~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~ 260 (275)
++..++++|.+....... ... ..-..+-++|.||+|+.. ......+.+.+..+.+ ...+++++|++++
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL-KRCTYYETCATYG 164 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT-TTCEEEEEBTTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc-CCCeEEEecCCCC
Confidence 377888899775421111 110 012345578899999952 2112334454444444 3578999999999
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
+|++++++.+
T Consensus 165 ~gv~~lf~~l 174 (184)
T 3ihw_A 165 LNVERVFQDV 174 (184)
T ss_dssp BTHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998864
No 205
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.90 E-value=6.7e-10 Score=92.72 Aligned_cols=51 Identities=18% Similarity=0.001 Sum_probs=35.9
Q ss_pred cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+-++|+||+|+........+.+++.+.+ ++..++.+|++++.+++++++.+
T Consensus 112 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~~--~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 112 VIMLVGNKSDLRHLRAVPTDEARAFAEK--NNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred eEEEEEECcccccccCcCHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHH
Confidence 4578899999975422233334443333 56789999999999999998765
No 206
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.89 E-value=3.4e-10 Score=94.59 Aligned_cols=76 Identities=13% Similarity=-0.029 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCCCccc--ccc----c---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGG----P---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~----~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..++++|.+....... ... . .-..+-++|+||+|+.+......+...+..+.. +.+++++|++++.|+
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--GATFMESSARENQLT 174 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECCTTCHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--CCeEEEEeCCCCCCH
Confidence 66788888764321110 000 0 113456889999999765323334444444444 368999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
++++..+
T Consensus 175 ~~l~~~l 181 (201)
T 3oes_A 175 QGIFTKV 181 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 207
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.89 E-value=1.9e-10 Score=107.91 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=38.5
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~ 119 (275)
+..+|++++|+|||||||||||++|++++.++ |+|.+++.++.
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 45679999999999999999999999999887 99999887663
No 208
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.89 E-value=1.7e-10 Score=113.14 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=36.8
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccCCCC--C-hHHHHHhccccCchh
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK--E-DGEFLMRNGALPEER 137 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~~~~--~-~~~~~~~ig~v~q~~ 137 (275)
-+.++|+|+|||||||||++|+|++.| + |.|.+.+.++... . ...+++.+||++|+.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence 456999999999999999999999878 5 8888777664211 1 123456799999864
No 209
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.89 E-value=4.4e-10 Score=93.94 Aligned_cols=76 Identities=17% Similarity=0.056 Sum_probs=48.2
Q ss_pred CceEEEEeCCCCCC---ccccccc------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDK---IPRKGGP------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d---~~~~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..|+++|.+.... ....... ....+-++|.||+|+........+..++..+.. +.+++++|++++.|+
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL--SCKHIETSAALHHNT 175 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh--CCEEEEEcCCCCCCH
Confidence 77888999764321 1111100 013456789999999754323344444444444 368999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
++++..+
T Consensus 176 ~~lf~~l 182 (195)
T 3cbq_A 176 RELFEGA 182 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 210
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.89 E-value=3.2e-11 Score=102.17 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.2
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
..+|++++|+||||||||||+++|+|+++|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4569999999999999999999999999853
No 211
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.87 E-value=4.5e-10 Score=94.32 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=46.7
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.+... ...+......+. ....++
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~ 181 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKY 181 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh-cCCcEE
Confidence 67788888775432111 111111 345688999999976521 111222233333 234569
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|+++++|++++++.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEA 199 (204)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 999999999999998764
No 212
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.87 E-value=1.9e-09 Score=91.80 Aligned_cols=76 Identities=13% Similarity=0.022 Sum_probs=45.7
Q ss_pred CceEEEEeCCCCCC---cccc---ccc--c-ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDK---IPRK---GGP--G-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d---~~~~---~~~--~-i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~ 263 (275)
+..|+++|.+.... .... ... . -..+-++|.||+|+........++.+...... +.+++++||++|+|+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~--~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF--DCKFIETSAAVQHNV 190 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc--CCEEEEEeCCCCCCH
Confidence 67888889764311 1100 000 0 13455788999999753212223332333333 368999999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
+++++.+
T Consensus 191 ~elf~~l 197 (211)
T 2g3y_A 191 KELFEGI 197 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999764
No 213
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.87 E-value=2e-10 Score=96.94 Aligned_cols=76 Identities=8% Similarity=-0.044 Sum_probs=46.1
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .....+ ..+-++|+||+|+........+.+.+..+. .+.+++++|++++.|++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG--KNYEYFEISAKTAHNFG 163 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT--CCCEEEEEBTTTTBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH--cCCcEEEEecCCCCCHH
Confidence 67888999876532111 000111 245688999999976522223333333322 35789999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 164 ~l~~~l 169 (218)
T 4djt_A 164 LPFLHL 169 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 214
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.87 E-value=2.4e-09 Score=90.54 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=49.4
Q ss_pred cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch--------
Q 023913 173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG-------- 233 (275)
Q Consensus 173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~-------- 233 (275)
..+.+++|+..-..+..... +..++++|.+....... .....+ ..+-++|+||+|+.....
T Consensus 84 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 163 (214)
T 2j1l_A 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRN 163 (214)
T ss_dssp EEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHT
T ss_pred EEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccc
Confidence 34445666543333333322 67788889775422111 111111 345588899999986521
Q ss_pred ----hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 234 ----ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 234 ----~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
...++..+..+.+ ...+++++|++++.|++++++.+
T Consensus 164 ~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 164 GLEPVTYHRGQEMARSV-GAVAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp TCCCCCHHHHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHH
T ss_pred ccCcccHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHH
Confidence 0112233333333 23489999999999999998754
No 215
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.38 E-value=2.3e-10 Score=95.70 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=44.7
Q ss_pred CceEEEEeCCCCCC---ccccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDK---IPRKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d---~~~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+.... ........+ ..+-++|+||+|+.+... ...+...+..+.. ...++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 181 (204)
T 3th5_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY 181 (204)
Confidence 66778888654321 111111111 345688999999975420 1111122222222 12378
Q ss_pred EEEEecCCcCHHHHhcccc
Q 023913 253 IFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~~ 271 (275)
+++|+++++|++++++.+.
T Consensus 182 ~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAI 200 (204)
Confidence 9999999999999998654
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.86 E-value=1.4e-09 Score=93.48 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=44.7
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHHHHHhccccCchhHHH
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~ 140 (275)
-.++|++++|+||||||||||+++|+|+++| . |.|.+.+.++.. ..+..++|+||++..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f 74 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEF 74 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHH
Confidence 4567999999999999999999999999886 4 777777655432 1134689999986443
No 217
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.86 E-value=4.9e-09 Score=92.60 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=26.6
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
..+|++++|+|+||||||||++.+++.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999999986543
No 218
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.86 E-value=9.4e-10 Score=91.11 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=47.4
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCcc--chhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQVGWVIG 262 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~--~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g 262 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.+. .....+.+.+..+.++ ..+++++|+++++|
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG-CVAYIEASSVAKIG 174 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-CSCEEECBTTTTBS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-CCEEEEeecCCCCC
Confidence 67788888765422111 111111 2455889999999753 1123444555555543 23399999999999
Q ss_pred HHHHhccc
Q 023913 263 IIFTLSIT 270 (275)
Q Consensus 263 ~~~l~~~~ 270 (275)
++++++.+
T Consensus 175 i~~l~~~l 182 (194)
T 3reg_A 175 LNEVFEKS 182 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 219
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.85 E-value=1.1e-08 Score=96.17 Aligned_cols=166 Identities=23% Similarity=0.187 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH----hccccCchhHHHHHhcCCCccchHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM----RNGALPEERIRAVETGGCPHAAIRED 154 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~----~ig~v~q~~~~~~~~~~~~~~~~~~~ 154 (275)
++.+++|+|++||||||++..|++.+.+. +++.+++.|+......+..+ ..++ + .+........ .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv-~-------v~~~~~~~~p-~- 166 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV-P-------VLEVMDGESP-E- 166 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC-C-------EEECCTTCCH-H-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc-c-------EEecCCCCCH-H-
Confidence 78999999999999999999999999887 89999998875421111111 1110 0 0000000000 0
Q ss_pred HHHHHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-CceEEEEeCCCCCCcccccccccc--c-cCEEE
Q 023913 155 ISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--Q-ADLLV 222 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~-adiiv 222 (275)
....+.++.+ ....+|++++++.|. .+...+++++. ++.++++|+.++.+..... ..+. . ...||
T Consensus 167 -~i~~~~l~~~-~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a-~~f~~~l~i~GVI 243 (425)
T 2ffh_A 167 -SIRRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA-RAFDEKVGVTGLV 243 (425)
T ss_dssp -HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH-HHHHHHTCCCEEE
T ss_pred -HHHHHHHHHH-HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH-HHHHhcCCceEEE
Confidence 1112244433 124678888885552 23334455555 7789999988775433221 1121 1 25689
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l 266 (275)
+||.|.....+..+ ...... +.||.++. .|+.++++
T Consensus 244 lTKlD~~~~~g~al----si~~~~--g~PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 244 LTKLDGDARGGAAL----SARHVT--GKPIYFAG--VSEKPEGL 279 (425)
T ss_dssp EESGGGCSSCHHHH----HHHHHH--CCCEEEEE--CSSSGGGE
T ss_pred EeCcCCcccHHHHH----HHHHHH--CCCEEEEe--CCCChhhc
Confidence 99999765532222 222222 56788876 36666544
No 220
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.85 E-value=7.5e-10 Score=111.02 Aligned_cols=99 Identities=14% Similarity=-0.045 Sum_probs=63.8
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-CC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~ 147 (275)
.+.+...+. |++++|+||||||||||||+++|+.. ++ |.+. +. ....+++++|-. .
T Consensus 567 ~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa------~~~~i~~v~~i~---------~ 624 (765)
T 1ewq_A 567 FVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PA------EEAHLPLFDGIY---------T 624 (765)
T ss_dssp CCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SS------SEEEECCCSEEE---------E
T ss_pred eEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----eh------hccceeeHHHhh---------c
Confidence 344555555 99999999999999999999999863 44 6532 11 023466665420 0
Q ss_pred ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHh--c-CceEEEEe-C---CCCCCcc
Q 023913 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL--A-DYIIYIID-V---SGGDKIP 208 (275)
Q Consensus 148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral--~-~~~vlllD-~---t~g~d~~ 208 (275)
..+..+ +.....|.|+.+++.+++++ + +|.++|+| | |+++|..
T Consensus 625 ~~~~~d------------------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 625 RIGASD------------------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp ECCC------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred cCCHHH------------------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 001000 01112288999999999988 6 89999999 6 5666643
No 221
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.85 E-value=4.6e-10 Score=94.02 Aligned_cols=75 Identities=21% Similarity=0.118 Sum_probs=46.6
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|++....... .....+ ..+-++|+||+|+.... ...+.+.+..... +.+++++|++++.|++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKEL--GIPFIESSAKNDDNVN 170 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHHHHHHHHHH--TCCEEECBTTTTBSSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence 67888999775422111 110111 24458899999995331 2233344444443 3589999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 171 ~l~~~l 176 (213)
T 3cph_A 171 EIFFTL 176 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 222
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.85 E-value=4.8e-10 Score=105.60 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=43.9
Q ss_pred CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..|+++|++.+....... ......+-++|+||+|+.... .. +.+. .++ ...+++++||++|.|++++++
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~-~~---~~~~-~~l-g~~~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-AN---IYDF-YSL-GFGEPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC------C---CCSS-GGG-SSCCCEECBTTTTBTHHHHHH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccch-hh---HHHH-HHc-CCCCeEEEeCcCCCChHHHHH
Confidence 7888899988775432211 111245668899999987541 11 1111 122 123789999999999999987
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 158 ~i 159 (436)
T 2hjg_A 158 AV 159 (436)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 223
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.85 E-value=9.4e-10 Score=89.57 Aligned_cols=77 Identities=14% Similarity=0.009 Sum_probs=47.3
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccchh----------hHHHHHHHHHhcCCCCCEEE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIGA----------DLAVMERDALRMRDGGPFIF 254 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~~----------~~~~~~~~i~~~~~~~~ii~ 254 (275)
+..++++|.+....... .....+ ..+-++|+||+|+...... ..+...+..+.. ...++++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 159 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI-GAPAYIE 159 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-CCCEEEE
Confidence 67888999765422110 111111 3455888999999765211 223333444443 2348999
Q ss_pred EEecCCcCHHHHhccc
Q 023913 255 AQVGWVIGIIFTLSIT 270 (275)
Q Consensus 255 ~S~~~~~g~~~l~~~~ 270 (275)
+|+++++|++++++.+
T Consensus 160 ~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAA 175 (182)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 9999999999998754
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.85 E-value=5.8e-09 Score=93.99 Aligned_cols=42 Identities=33% Similarity=0.420 Sum_probs=37.6
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~ 119 (275)
..++++++|+|+|||||||+++.|++.+.+. ++|.+.+.|..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 3568999999999999999999999999887 88999988864
No 225
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=9e-10 Score=92.51 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=44.6
Q ss_pred CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i 252 (275)
+..|+++|.+...... ......+ ..+-++|+||+|+.+... ...+...+..+.+ ...++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 176 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI-QAYDY 176 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc-CCCEE
Confidence 6678888876532111 1111111 345588999999976510 0111222222222 22379
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|++++.|++++++.+
T Consensus 177 ~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETA 194 (207)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 999999999999998754
No 226
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.84 E-value=6.5e-10 Score=102.23 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=29.2
Q ss_pred cccCC--CcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 76 NFNER--AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 76 ~~~~~--geiv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
....+ ++.++|+|+||||||||+++|+|+++|+
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34456 9999999999999999999999999874
No 227
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.83 E-value=1.1e-09 Score=103.61 Aligned_cols=142 Identities=17% Similarity=0.111 Sum_probs=73.4
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
-..++|+|++|+|||||+|.|+|. +..+....++...+ +..+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~-----~~~~v~~~~g~t~~----~~~~~---------------------------- 65 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE-----RISIVEDTPGVTRD----RIYSS---------------------------- 65 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE-----EEC---------------CEEEE----------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC-----CCcccCCCCCccee----EEEEE----------------------------
Confidence 458999999999999999999985 22222111111000 00000
Q ss_pred HHHHhhcccccccccccChh--------HHHHHHHHHHh---cCceEEEEeCCCCCCcccc-c---cccccccCEEEEec
Q 023913 161 PLEELSNLFKADLLLCESGG--------DNLAANFSREL---ADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINK 225 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~eS~G--------~~q~~~laral---~~~~vlllD~t~g~d~~~~-~---~~~i~~adiivlNK 225 (275)
.........+.+++| +.+....+... ++..|+++|...+...... . ......+-++|+||
T Consensus 66 -----~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK 140 (456)
T 4dcu_A 66 -----AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNK 140 (456)
T ss_dssp -----CTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEEC
T ss_pred -----EEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEEC
Confidence 001122334445555 44443333332 3788888997766543221 1 11124566889999
Q ss_pred CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+|+.... +.+.+. ..+ ...+++++||+++.|++++++.+
T Consensus 141 ~D~~~~~----~~~~e~-~~l-g~~~~~~iSA~~g~gv~~L~~~i 179 (456)
T 4dcu_A 141 LDNTEMR----ANIYDF-YSL-GFGEPYPISGTHGLGLGDLLDAV 179 (456)
T ss_dssp C-------------CCS-GGG-SSSSEEECCTTTCTTHHHHHHHH
T ss_pred ccchhhh----hhHHHH-HHc-CCCceEEeecccccchHHHHHHH
Confidence 9987541 111111 112 23467899999999999998754
No 228
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.83 E-value=1.6e-09 Score=102.03 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=46.1
Q ss_pred cCceEEEEeCCCCCCcccc-cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913 192 ADYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~~~-~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~ 267 (275)
++..++++|.+.+...... .... ...+-++|+||+|+... .. ..+...+.++ ...+++++||++|.|+++++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~-~~~~~~~~~l-g~~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE-REVKPELYSL-GFGEPIPVSAEHNINLDTML 157 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH-HHTHHHHGGG-SSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH-HHHHHHHHhc-CCCCEEEEeccCCCCHHHHH
Confidence 3788999998776532211 1111 24556889999998532 11 1221122232 23368999999999999998
Q ss_pred ccc
Q 023913 268 SIT 270 (275)
Q Consensus 268 ~~~ 270 (275)
+.+
T Consensus 158 ~~i 160 (439)
T 1mky_A 158 ETI 160 (439)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 229
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.83 E-value=2.6e-09 Score=108.81 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=59.7
Q ss_pred Cccccccc-cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCc
Q 023913 70 PPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (275)
Q Consensus 70 ~~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~ 148 (275)
.+.+...+ ..+|++++|+|||||||||||+++++..-. .+...++|.... ..+....
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------aq~g~~vpa~~~---~i~~~d~ 718 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------AQIGSYVPAEEA---TIGIVDG 718 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------HHHTCCBSSSEE---EEECCSE
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------hhcCccccchhh---hhhHHHH
Confidence 34444444 567999999999999999999999764210 001112222110 0000000
Q ss_pred cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEe-CCCCCCccc
Q 023913 149 AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD-~t~g~d~~~ 209 (275)
.+..++........+.. |+||++++.++++..+|.++||| |++|+|...
T Consensus 719 ------------i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~ 769 (918)
T 3thx_B 719 ------------IFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHD 769 (918)
T ss_dssp ------------EEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHH
T ss_pred ------------HHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Confidence 00001111111111222 78999999999885599999999 899998754
No 230
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.83 E-value=1.5e-10 Score=102.43 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=47.1
Q ss_pred CceEEEEeCCCCCCccc--cccccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..|+++|+++...... .....+..+-++|+||+|+.+... ...+.+.+.+ +.+++++|+++|+|++++++
T Consensus 87 d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 87 DLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL-----GCPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH-----TSCEEECCCGGGHHHHHHHH
T ss_pred CEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHH
Confidence 67788899775321110 011123567799999999875421 2233343332 37899999999999999987
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 162 ~i 163 (274)
T 3i8s_A 162 AI 163 (274)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 231
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.83 E-value=1.4e-09 Score=112.12 Aligned_cols=93 Identities=17% Similarity=0.082 Sum_probs=56.7
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhcc-ccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIRAVETGGCPHAAIREDISINL 159 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 159 (275)
|++++|+|||||||||||+++ |++.+ ...+| ||||+.. .++......
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~---~l~v~d~I~--------- 836 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC---RLTPIDRVF--------- 836 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE---EECCCSBEE---------
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC---CCCHHHHHH---------
Confidence 899999999999999999999 98641 24566 8888642 111111110
Q ss_pred HHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 160 GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 160 ~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..++.......-... ++++. .++++++++ +|.++|+| |++|.|...
T Consensus 837 ---~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~d 885 (1022)
T 2o8b_B 837 ---TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFD 885 (1022)
T ss_dssp ---EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHH
T ss_pred ---HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHH
Confidence 000000000001111 44544 478888888 89999999 888887543
No 232
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.83 E-value=1.5e-09 Score=90.76 Aligned_cols=59 Identities=22% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~ 140 (275)
.+|++++|+||||||||||+++|+++++ .+.+.+.+............++|++|++..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 4699999999999999999999999864 4444443332222112245688999987543
No 233
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=89.96 Aligned_cols=76 Identities=16% Similarity=-0.022 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCccc--ccccc---------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEe-cCC
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPG---------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV-GWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~---------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~-~~~ 260 (275)
+..++++|.+....... ..... -..+-++|.||+|+........+.+.+..+++ +.+++++|+ +++
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--GCLFFEVSACLDF 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECCSSSCS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--CCcEEEEeecCcc
Confidence 67788889764321110 00011 13445888999999754223334455555555 368999999 899
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
+|++++++.+
T Consensus 171 ~gv~~lf~~l 180 (187)
T 3c5c_A 171 EHVQHVFHEA 180 (187)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 9999998754
No 234
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.82 E-value=1.2e-09 Score=89.22 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.+... ...+...+..+.. ...++
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 156 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY 156 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc-CCcEE
Confidence 67788889765421111 111111 345688999999976410 0112222333333 23489
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|++++.|++++++.+
T Consensus 157 ~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEA 174 (186)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEecCCCccCHHHHHHHH
Confidence 999999999999998754
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.82 E-value=8.2e-10 Score=105.85 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
+..+++|+|++|||||||++.|+..+... .++.++..|+......+..+..+ .......+...+........
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~-------~~~~i~v~~~~~~~dp~~i~ 172 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA-------TKARIPFYGSYTEMDPVIIA 172 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHH-------HHHTCCEEECCCCSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHh-------hccCceEEccCCCCCHHHHH
Confidence 46689999999999999999999766544 47888888875422211111000 00000000000000001111
Q ss_pred HHHHHHhhcccccccccccChhHHH--------HHHHHHHhc-CceEEEEeCCCCCCcccccccccc--cc-CEEEEecC
Q 023913 159 LGPLEELSNLFKADLLLCESGGDNL--------AANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLVINKT 226 (275)
Q Consensus 159 ~~~L~~l~~~~~~d~~~~eS~G~~q--------~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~a-diivlNK~ 226 (275)
.+.+..+ ....++.+++++.|..+ ...+++++. +..++++|++.+.+.... ...+. .+ +.||+||+
T Consensus 173 ~~al~~~-~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-a~~~~~~~~i~gvVlNK~ 250 (504)
T 2j37_W 173 SEGVEKF-KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDKVDVASVIVTKL 250 (504)
T ss_dssp HHHHHHH-HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-HHHHHHHHCCCCEEEECT
T ss_pred HHHHHHH-HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-HHHHHhhcCceEEEEeCC
Confidence 2244443 22467888999666431 112233333 677889999887653211 11222 33 68999999
Q ss_pred CCCccchhhHHHHHHHH-------------HhcCCCCCEEEEEecCCcC-HHHHhccc
Q 023913 227 DLASAIGADLAVMERDA-------------LRMRDGGPFIFAQVGWVIG-IIFTLSIT 270 (275)
Q Consensus 227 Dl~~~~~~~~~~~~~~i-------------~~~~~~~~ii~~S~~~~~g-~~~l~~~~ 270 (275)
|........++ +.+.+ ..+.+..+++++|+..|.| +++|++..
T Consensus 251 D~~~~~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i 307 (504)
T 2j37_W 251 DGHAKGGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKV 307 (504)
T ss_dssp TSCCCCTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHH
T ss_pred ccccchHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHH
Confidence 99865333333 22111 1223344555667777877 66665543
No 236
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.82 E-value=2.2e-10 Score=93.74 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=48.4
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVME 240 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~ 240 (275)
...+.+++|+..-..+..... +..++++|.+....... .....+ ..+-++|+||+|+........+.++
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 137 (183)
T 2fu5_C 58 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 137 (183)
T ss_dssp EEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred EEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHH
Confidence 344455666543323322222 67888999776422111 010111 2355889999999764222334454
Q ss_pred HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+..+.. +.+++++|++++.|+++++..+
T Consensus 138 ~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 138 KLALDY--GIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp HHHHHH--TCEEEECCC---CCHHHHHHHH
T ss_pred HHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 444444 3689999999999999998764
No 237
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4e-10 Score=95.86 Aligned_cols=76 Identities=14% Similarity=-0.072 Sum_probs=45.4
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .....+ ..+-+||+||+|+........+.+.+..+.. +.+++++|+++++|++
T Consensus 87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN--QLLFTETSALNSENVD 164 (223)
T ss_dssp CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT--TCEEEECCCC-CCCHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence 56788888765432111 000111 3345788999999764222334444444443 4789999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
+++..+
T Consensus 165 ~l~~~l 170 (223)
T 3cpj_B 165 KAFEEL 170 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.80 E-value=8.5e-10 Score=90.57 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=44.1
Q ss_pred CceEEEEeCCCCCCccccc--cccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~--~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..++++|+++........ ......+-++|+||+|+..... ...+.+. +.+ +.+++++|++++.|++++++
T Consensus 87 ~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 87 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KIL--GVKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHH--TSCEEECBGGGTBSHHHHHH
T ss_pred CEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH---HHh--CCCeEEEEecCCCCHHHHHH
Confidence 5567778876432111100 0112345688999999864311 1223332 223 36899999999999999987
Q ss_pred ccc
Q 023913 269 ITH 271 (275)
Q Consensus 269 ~~~ 271 (275)
.+.
T Consensus 162 ~i~ 164 (188)
T 2wjg_A 162 AIS 164 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 239
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.80 E-value=7.9e-09 Score=97.48 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=59.0
Q ss_pred cccccccChhHHHHHHHHHH-h--cCceEEEEeCCCCCC-------ccccc----ccccccc-CEEEEecCCCCccc--h
Q 023913 171 ADLLLCESGGDNLAANFSRE-L--ADYIIYIIDVSGGDK-------IPRKG----GPGITQA-DLLVINKTDLASAI--G 233 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~lara-l--~~~~vlllD~t~g~d-------~~~~~----~~~i~~a-diivlNK~Dl~~~~--~ 233 (275)
....+.+++|..+-...... + ++..|+++|++.+.. .+... ...+..+ -++++||+|+.... .
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 45667778897654433322 2 378999999887742 11111 1123445 46789999996421 1
Q ss_pred hhHHH----HHHHHHhcC----CCCCEEEEEecCCcCHHHHhc
Q 023913 234 ADLAV----MERDALRMR----DGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 234 ~~~~~----~~~~i~~~~----~~~~ii~~S~~~~~g~~~l~~ 268 (275)
...+. +.+.++++. ...+++++||++|.|++++.+
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22223 333333332 256899999999999998655
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.80 E-value=2.4e-10 Score=102.73 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE---EeccCCCCChHHHHHhccccCchh
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
..|++++|+|+||||||||+|+|+ +++|+ |.|.+ .+.+..........+.+||++|.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP 224 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence 458999999999999999999999 98888 99998 666554322111113578887765
No 241
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.79 E-value=2.6e-09 Score=97.05 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=55.7
Q ss_pred ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cccc---c---ccccCEEEEecCCCCccchhhHHHH
Q 023913 172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGGP---G---ITQADLLVINKTDLASAIGADLAVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~~---~---i~~adiivlNK~Dl~~~~~~~~~~~ 239 (275)
...+.+++|+..-..+....+ +..|+++|.+....... .... . -..+-+||+||+|+.+. ...+++
T Consensus 210 ~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~i 287 (329)
T 3o47_A 210 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEI 287 (329)
T ss_dssp EEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHH
T ss_pred EEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc--cCHHHH
Confidence 344555666443222222222 67888999865432111 1101 1 13345888999999876 344555
Q ss_pred HHHHHhcC---CCCCEEEEEecCCcCHHHHhcccc
Q 023913 240 ERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 240 ~~~i~~~~---~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
...+.... ...+++++|+++++|++++++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 288 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp HHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 55443322 346799999999999999998643
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.79 E-value=1.7e-09 Score=91.58 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=35.7
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~ 118 (275)
..+|++++|+||||||||||++.|++.+.+. +++.+++.+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 4679999999999999999999999887765 8888887654
No 243
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.79 E-value=5e-09 Score=96.31 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=32.0
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEe
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT 115 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~ 115 (275)
...++++++|+|||||||||||++|+|+++++ + .|....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 45678899999999999999999999999875 4 444443
No 244
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.79 E-value=2.3e-09 Score=87.80 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=35.9
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
..+-++|+||+|+.... .+.+++..++++- ..+++++|+++++|++++++.+
T Consensus 122 ~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 178 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 178 (190)
T ss_dssp TCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred CCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHH
Confidence 45668999999998763 2223333333332 1358999999999999998754
No 245
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.78 E-value=2.2e-09 Score=89.70 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=45.7
Q ss_pred CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+...... ......+ ..+-++|+||+|+.+... ...+...+..+.+ ...++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 176 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI-SAFGY 176 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC-CCcEE
Confidence 6778888876532111 1111111 345688999999986521 1112223333333 23379
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|+++++|++++++.+
T Consensus 177 ~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMA 194 (201)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 999999999999998754
No 246
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.78 E-value=2.4e-10 Score=101.27 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=45.5
Q ss_pred CceEEEEeCCCCCCcccccccc---ccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913 193 DYIIYIIDVSGGDKIPRKGGPG---ITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~~~~---i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~ 267 (275)
+..++++|+++...... ...+ ...+-++|+||+|+..... .+.+.+.+.+ +.+++++|+++++|+++++
T Consensus 82 d~vi~V~D~t~~e~~~~-~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 82 DSILNVVDATNLERNLY-LTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL-----GVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp SEEEEEEEGGGHHHHHH-HHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-----TSCEEECBTTTTBSHHHHH
T ss_pred CEEEEEecCCchHhHHH-HHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-----CCCEEEEEccCCCCHHHHH
Confidence 56778888765321111 1111 2466789999999864311 2233343332 4689999999999999998
Q ss_pred ccc
Q 023913 268 SIT 270 (275)
Q Consensus 268 ~~~ 270 (275)
+.+
T Consensus 156 ~~i 158 (272)
T 3b1v_A 156 KKA 158 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 247
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.78 E-value=1.1e-09 Score=96.19 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=46.9
Q ss_pred CceEEEEeCCCCCCccccc--cccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~--~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..++++|+++........ ......+-++|+||+|+..... .+.+.+.+. + +.+++++|++++.|++++++
T Consensus 85 d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~---l--g~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 85 DLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKH---L--GIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHH---H--CSCEEECCTTTCTTHHHHHH
T ss_pred CEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHH---c--CCCEEEEEeeCCcCHHHHHH
Confidence 6778899987643211110 0112466789999999865421 123333333 2 37899999999999999987
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 160 ~i 161 (258)
T 3a1s_A 160 KI 161 (258)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 248
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=3.5e-09 Score=87.52 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=47.1
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.... ....+...+..+.++ ..++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 169 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-ACCY 169 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT-CSCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC-CcEE
Confidence 67788889765421110 111111 34558899999997641 012233444444442 2479
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|+++++|++++++.+
T Consensus 170 ~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEA 187 (194)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHH
Confidence 999999999999998754
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.78 E-value=8.6e-09 Score=92.44 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=96.9
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-H---HHhcc--ccCchhHHHHHhcCCCccc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNG--ALPEERIRAVETGGCPHAA 150 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~---~~~ig--~v~q~~~~~~~~~~~~~~~ 150 (275)
..++.+++++|++|+||||++..|++.+.+. +++.+...|+......+ + .+..+ +++. .....
T Consensus 95 ~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~----------~~~~~ 164 (297)
T 1j8m_F 95 DKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE----------PGEKD 164 (297)
T ss_dssp SSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC----------TTCCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec----------CCCCC
Confidence 3448999999999999999999999998877 88999998875432111 1 11111 1110 00001
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccChhHHH-----HHH-----HHHHhc-CceEEEEeCCCCCCcccccccccc--c
Q 023913 151 IREDISINLGPLEELSNLFKADLLLCESGGDNL-----AAN-----FSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--Q 217 (275)
Q Consensus 151 ~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q-----~~~-----laral~-~~~vlllD~t~g~d~~~~~~~~i~--~ 217 (275)
.. ....+.++.+ ....+|+++++++|..+ .+. +.+++. +..++++|+..+.+..... ..+. .
T Consensus 165 -p~--~~~~~~l~~~-~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~-~~~~~~~ 239 (297)
T 1j8m_F 165 -VV--GIAKRGVEKF-LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SKFNQAS 239 (297)
T ss_dssp -HH--HHHHHHHHHH-HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHTC
T ss_pred -HH--HHHHHHHHHH-HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHH-HHHHhhC
Confidence 11 1112344443 22467889999665433 111 123333 6788899987664432211 1121 2
Q ss_pred c-CEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 218 A-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 218 a-diivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
. ..+|+||+|..... ..+....... +.||.+++ .|++++++...
T Consensus 240 ~i~gvVlnk~D~~~~~----g~~~~~~~~~--~~pi~~i~--~Ge~v~dl~~f 284 (297)
T 1j8m_F 240 KIGTIIITKMDGTAKG----GGALSAVAAT--GATIKFIG--TGEKIDELEVF 284 (297)
T ss_dssp TTEEEEEECGGGCTTH----HHHHHHHHTT--TCCEEEEE--CSSSTTCEEEC
T ss_pred CCCEEEEeCCCCCcch----HHHHHHHHHH--CcCEEEEe--CCCChhhcccC
Confidence 3 56899999976542 2222333333 57888887 58888766543
No 250
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.77 E-value=1.5e-09 Score=104.46 Aligned_cols=71 Identities=10% Similarity=-0.093 Sum_probs=53.7
Q ss_pred CCCCcccccc-ccCCCcEEEEEcCCcchHHHHHHH--HHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH
Q 023913 67 RRAPPILSRN-FNERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (275)
Q Consensus 67 ~~~~~~~~~~-~~~~geiv~IiG~nGaGKTTLl~~--L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~ 138 (275)
+.+++.+.++ -..+|++++|+|+||||||||+++ +.|+++|+ |.+.+.+.+. ........+.+||++|++.
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 4455555555 567899999999999999999999 67998877 9898887662 1112334567999999864
No 251
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.77 E-value=2.8e-09 Score=91.21 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=56.1
Q ss_pred cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---cccccc--c---ccccCEEEEecCCCCccchhhHHHHHHHH
Q 023913 175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PRKGGP--G---ITQADLLVINKTDLASAIGADLAVMERDA 243 (275)
Q Consensus 175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~~~~~--~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i 243 (275)
+.++.|+.+--.+..... +..+++.|.+..... ...... . -..+-+||.||+|+.+......++.++..
T Consensus 66 iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a 145 (216)
T 4dkx_A 66 LWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 145 (216)
T ss_dssp EECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred EEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH
Confidence 344666543233333332 677888887653211 111100 0 12344778999999765333455565666
Q ss_pred HhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913 244 LRMRDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 244 ~~~~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
++++ ++++++||++|.|+++++..+
T Consensus 146 ~~~~--~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 146 KELN--VMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp HHHT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred HHhC--CeeEEEeCCCCcCHHHHHHHH
Confidence 6653 679999999999999998754
No 252
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.76 E-value=1.5e-09 Score=103.50 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=56.3
Q ss_pred ccccccccChhHHHHHHHHHH-h--cCceEEEEeCCCCCC-------ccccc----ccccccc-CEEEEecCCCCccchh
Q 023913 170 KADLLLCESGGDNLAANFSRE-L--ADYIIYIIDVSGGDK-------IPRKG----GPGITQA-DLLVINKTDLASAIGA 234 (275)
Q Consensus 170 ~~d~~~~eS~G~~q~~~lara-l--~~~~vlllD~t~g~d-------~~~~~----~~~i~~a-diivlNK~Dl~~~~~~ 234 (275)
.....+.++.|+.+-...... + ++..|+++|++.+.- .+... ...+... -++|+||+|+.+....
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 345667778887654333322 2 278999999887631 11111 1112333 4678999999863223
Q ss_pred hHHHHHHHHHh----cC---CCCCEEEEEecCCcCHHHH
Q 023913 235 DLAVMERDALR----MR---DGGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 235 ~~~~~~~~i~~----~~---~~~~ii~~S~~~~~g~~~l 266 (275)
..+++.+.+.. +. ...+++++||++|.|++++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33444433332 22 1578999999999999754
No 253
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.76 E-value=8.4e-09 Score=83.77 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=47.6
Q ss_pred cCceEEEEeCCCCCCcc--ccc---ccc------ccccCEEEEecCCCCc--cchhhHHHHHHHHHhcCCCCCEEEEEec
Q 023913 192 ADYIIYIIDVSGGDKIP--RKG---GPG------ITQADLLVINKTDLAS--AIGADLAVMERDALRMRDGGPFIFAQVG 258 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~~--~~~---~~~------i~~adiivlNK~Dl~~--~~~~~~~~~~~~i~~~~~~~~ii~~S~~ 258 (275)
++..++++|.+...... ... ... -..+-++|.||+|+.. ......+.+.+..+.. ...+++++|++
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~ 151 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYETXAT 151 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEEBTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEEecc
Confidence 37888899976542111 010 001 1235578899999942 2112334444444443 35689999999
Q ss_pred CCcCHHHHhccc
Q 023913 259 WVIGIIFTLSIT 270 (275)
Q Consensus 259 ~~~g~~~l~~~~ 270 (275)
+++|++++++.+
T Consensus 152 ~~~~i~~lf~~l 163 (178)
T 2iwr_A 152 YGLNVDRVFQEV 163 (178)
T ss_dssp TTBTHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 999999998754
No 254
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.75 E-value=6.6e-09 Score=85.52 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999863
No 255
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.75 E-value=1.7e-08 Score=85.50 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.9
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
..+|++++|+||||||||||+++|+|.+.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 467999999999999999999999996554
No 256
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.74 E-value=3.3e-09 Score=89.85 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=47.5
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCcc------------chhhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASA------------IGADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~------------~~~~~~~~~~~i~~~~~~~~i 252 (275)
+..|+++|.+....... .....+ ..+-+||.||+|+.+. .....+...+..+.++ ..++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 178 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG-AEIY 178 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-CCEE
Confidence 67888899876432111 111111 3456888999999753 1122344444444442 2389
Q ss_pred EEEEecCCcC-HHHHhccc
Q 023913 253 IFAQVGWVIG-IIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g-~~~l~~~~ 270 (275)
+++||+++.| ++++++.+
T Consensus 179 ~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp EECCTTTCHHHHHHHHHHH
T ss_pred EEeccCCCcccHHHHHHHH
Confidence 9999999998 99998754
No 257
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.74 E-value=2.4e-09 Score=102.05 Aligned_cols=77 Identities=16% Similarity=0.052 Sum_probs=48.8
Q ss_pred CceEEEEeCCCCCCccc---cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGP------GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~ 260 (275)
+..|+++|.+....... .... .-..+-+||+||+|+... ...+++.+.+... ....+++++||++|
T Consensus 391 d~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 391 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 67888999876532111 0000 113456889999999865 3344454443321 13456999999999
Q ss_pred cCHHHHhcccc
Q 023913 261 IGIIFTLSITH 271 (275)
Q Consensus 261 ~g~~~l~~~~~ 271 (275)
+|++++++.+.
T Consensus 469 ~gi~~l~~~l~ 479 (497)
T 3lvq_E 469 DGLYEGLTWLT 479 (497)
T ss_dssp BTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998653
No 258
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.73 E-value=2.2e-09 Score=96.33 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=38.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE---EeccCCCCChHHHHHhccccCchh
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
..|++++|+||||||||||||+|+|+.+|+ |.|.+ .+.++.........+.+||++|.+
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p 229 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP 229 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence 468999999999999999999999999998 99988 666654322111123588888875
No 259
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.73 E-value=1.2e-08 Score=104.09 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=26.1
Q ss_pred ccccccc-cCCCcEEEEEcCCcchHHHHHHHHH
Q 023913 71 PILSRNF-NERAFTVGIGGPVGTGKTALMLALC 102 (275)
Q Consensus 71 ~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~ 102 (275)
+.+...+ ..+|++++|+||||||||||||+++
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4444444 4569999999999999999999993
No 260
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.72 E-value=2.8e-09 Score=87.56 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=45.9
Q ss_pred CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+...... ......+ ..+-++|.||+|+.... ....+...+..++++ ..++
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 158 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATY 158 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-CcEE
Confidence 5678888876532111 1111111 24557889999997431 012233444444443 4689
Q ss_pred EEEEec-CCcCHHHHhccc
Q 023913 253 IFAQVG-WVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~-~~~g~~~l~~~~ 270 (275)
+++|++ ++.|+++++..+
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVA 177 (184)
T ss_dssp EECBTTTBHHHHHHHHHHH
T ss_pred EEeeecCCCcCHHHHHHHH
Confidence 999999 689999998754
No 261
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.72 E-value=2.2e-09 Score=88.32 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCccc---cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGP------GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV 260 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~ 260 (275)
+..++++|++....... .... .-..+-++|+||+|+.+. ...+++.+.+.. . ....+++++|++++
T Consensus 91 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 91 DAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQLGVSSIMNRTWTIVKSSSKTG 168 (189)
T ss_dssp CEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhccCCceEEEEccCCCc
Confidence 67888999876532211 0100 113456889999999865 333444444321 1 12457999999999
Q ss_pred cCHHHHhccc
Q 023913 261 IGIIFTLSIT 270 (275)
Q Consensus 261 ~g~~~l~~~~ 270 (275)
+|++++++.+
T Consensus 169 ~gi~~l~~~l 178 (189)
T 2x77_A 169 DGLVEGMDWL 178 (189)
T ss_dssp TTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999998764
No 262
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.72 E-value=3.5e-09 Score=88.02 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=46.4
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i 252 (275)
+..|+++|++....... .....+ ..+-++|+||+|+.... ....+......+.+ ...++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI-KAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc-CCcEE
Confidence 67788889765422111 111111 34558889999997531 01223333333333 23489
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|+++++|++++++.+
T Consensus 172 ~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAA 189 (201)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHH
Confidence 999999999999998754
No 263
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.71 E-value=2.5e-09 Score=89.72 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=47.7
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccchh--------hHHHHHHHHHhcCCCCCEEEEE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIGA--------DLAVMERDALRMRDGGPFIFAQ 256 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~~--------~~~~~~~~i~~~~~~~~ii~~S 256 (275)
+..|+++|.+....... .....+ ..+-+||+||+|+...... ..+.+.+..+.++ ..+++++|
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~S 160 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-AAAYIECS 160 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-CSEEEECC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-CceEEEcc
Confidence 67788889765421111 111111 3456889999999765211 2344444444443 35899999
Q ss_pred ecCCcCHHHHhccc
Q 023913 257 VGWVIGIIFTLSIT 270 (275)
Q Consensus 257 ~~~~~g~~~l~~~~ 270 (275)
+++++|++++++.+
T Consensus 161 a~~g~gi~~l~~~l 174 (212)
T 2j0v_A 161 SKTQQNVKAVFDTA 174 (212)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999998754
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.71 E-value=9.2e-08 Score=85.64 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=90.7
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCcc--chHH
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIRE 153 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~--~~~~ 153 (275)
..++++++|+|+|||||||+++.|++.+.++ | +|.+...|.......+..+.. ....+.+.. ....
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~----------~~~~gl~~~~~~~~~ 171 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTY----------AELLQAPLEVCYTKE 171 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHH----------HTTTTCCCCBCSSHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHH----------HHhcCCCeEecCCHH
Confidence 4568999999999999999999999999874 7 899998887532221111100 001111110 0011
Q ss_pred HHHHHHHHHHHhhcccccccccccChhHH-----HHHHHHHHhc----CceEEEEeCCCCCCcccccccccc--ccCEEE
Q 023913 154 DISINLGPLEELSNLFKADLLLCESGGDN-----LAANFSRELA----DYIIYIIDVSGGDKIPRKGGPGIT--QADLLV 222 (275)
Q Consensus 154 ~~~~~~~~L~~l~~~~~~d~~~~eS~G~~-----q~~~laral~----~~~vlllD~t~g~d~~~~~~~~i~--~adiiv 222 (275)
.+ ..++..+ ..++.+++++.|.- ....+...+. +..++++|.+.+.+........+. ...-+|
T Consensus 172 ~l---~~al~~~---~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 172 EF---QQAKELF---SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HH---HHHHHHG---GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred HH---HHHHHHh---cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 11 2234332 45788888855532 1222222222 235888998766322111111121 235688
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH-HHHh
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFTL 267 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~-~~l~ 267 (275)
+||.|.....+ .+...+... +.||.+++ .|+++ +++.
T Consensus 246 ltk~D~~~~~g----~~~~~~~~~--~~pi~~i~--~ge~vp~dl~ 283 (296)
T 2px0_A 246 FTKIDETTSLG----SVFNILAES--KIGVGFMT--NGQNVPEDIQ 283 (296)
T ss_dssp EECTTTCSCCH----HHHHHHHTC--SCCCSEEC--CSSCTTTSCB
T ss_pred EeCCCcccchh----HHHHHHHHH--CcCEEEEE--CCCCChHHHh
Confidence 99999875532 233344443 46666655 46666 4443
No 265
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.70 E-value=2.4e-08 Score=93.15 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=57.1
Q ss_pred cccccccChhHHHHHHH-HHHhc--CceEEEEeCCCCC-Cccccc----ccccccc-CEEEEecCCCCccch--hhHHHH
Q 023913 171 ADLLLCESGGDNLAANF-SRELA--DYIIYIIDVSGGD-KIPRKG----GPGITQA-DLLVINKTDLASAIG--ADLAVM 239 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~l-aral~--~~~vlllD~t~g~-d~~~~~----~~~i~~a-diivlNK~Dl~~~~~--~~~~~~ 239 (275)
....+.+++|...-... .+.+. +..|+++|++.+. ..+... ...+... -++++||+|+.+... ...+++
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 34556678886543222 12222 7889999988764 222211 1122332 368899999986521 234556
Q ss_pred HHHHHhcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913 240 ERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 240 ~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
.+.++... ...+++++|+++++|++++++.+.
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp HHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 66665432 367899999999999999987653
No 266
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.69 E-value=2.5e-08 Score=90.75 Aligned_cols=37 Identities=30% Similarity=0.264 Sum_probs=28.5
Q ss_pred ccccc-ChhHHHH------HHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913 173 LLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 173 ~~~~e-S~G~~q~------~~laral~-~~~vlllD-~t~g~d~~~ 209 (275)
..+.+ |+||+|+ +++|++++ +|+++|+| |++++|...
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~ 289 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 289 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH
Confidence 34455 9999995 55666666 89999999 899998754
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.69 E-value=1.5e-09 Score=99.93 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=45.7
Q ss_pred cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC-ch
Q 023913 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EE 136 (275)
Q Consensus 72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~-q~ 136 (275)
.+.++...+|++++|+||||||||||+++|+++++|+ |.|.+.+.. .......++.+++++ |+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~~~v~~v~~q~ 230 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHPNHVHLFYPSE 230 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCSSEEEEECC--
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccCCEEEEeecCc
Confidence 3444556789999999999999999999999999998 888887532 222212334577877 54
No 268
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.68 E-value=6.7e-09 Score=98.91 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=43.2
Q ss_pred CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (275)
Q Consensus 70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~ 120 (275)
++.+.++...+ ++++|+|||||||||||++|+|+++|+ |+|.+.+.++..
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 45566666677 999999999999999999999999998 999999887754
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.68 E-value=2e-08 Score=92.84 Aligned_cols=55 Identities=15% Similarity=0.395 Sum_probs=42.6
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccCCCCChHHHHHhccccCch
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (275)
..+|++++|+||||||||||+++|+++++|+ |+|.+++.++. . .+...+++++|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQR 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEee
Confidence 5679999999999999999999999999874 88877776543 1 123456777763
No 270
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.68 E-value=1.7e-08 Score=92.48 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhc-Cc--eEEEEeCCCCCCcccc---cc---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCC
Q 023913 180 GDNLAANFSRELA-DY--IIYIIDVSGGDKIPRK---GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG 250 (275)
Q Consensus 180 G~~q~~~laral~-~~--~vlllD~t~g~d~~~~---~~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~ 250 (275)
...+...+++..+ ++ .|+++|+++....... .. .....+-++|+||+|+++......+.+... ...-+.
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~--~~~~~~ 235 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR--SFKLKY 235 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS--SSCCSS
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc--cccccC
Confidence 3455677777776 55 4555555432211110 11 112345688999999986532222222221 222346
Q ss_pred CEEEEEecCCcCHHHHhc
Q 023913 251 PFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 251 ~ii~~S~~~~~g~~~l~~ 268 (275)
+.+.++++++.++++.+.
T Consensus 236 ~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 236 PWVGVVNRSQADINKNVD 253 (360)
T ss_dssp CCEEECCCCHHHHHTTCC
T ss_pred CeEEEEECChHHhccCCC
Confidence 788899998888776543
No 271
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.68 E-value=4.5e-09 Score=88.54 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=45.6
Q ss_pred CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i 252 (275)
+..|+++|.+...... ......+ ..+-++|.||+|+.... ....++..+..++++ ..++
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 179 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATY 179 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-CCEE
Confidence 5678888876532111 1111111 23457889999997531 012233444444443 3579
Q ss_pred EEEEec-CCcCHHHHhccc
Q 023913 253 IFAQVG-WVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~-~~~g~~~l~~~~ 270 (275)
+++|++ ++.|+++++..+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l 198 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVA 198 (205)
T ss_dssp EECCTTTCHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHH
Confidence 999999 689999998754
No 272
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.67 E-value=1.7e-08 Score=94.88 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=58.2
Q ss_pred ccccccChhHHHHH-HHHHHhc--CceEEEEeCCCCCCccccc----ccccccc-CEEEEecCCCCccchhhH----HHH
Q 023913 172 DLLLCESGGDNLAA-NFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQA-DLLVINKTDLASAIGADL----AVM 239 (275)
Q Consensus 172 d~~~~eS~G~~q~~-~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~a-diivlNK~Dl~~~~~~~~----~~~ 239 (275)
...+.+++|+.+-. ...+.+. +..|+++|++.+...+... ...+..+ -++|+||+|+.+...... +++
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~ 184 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADY 184 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHH
Confidence 45567788865422 2222233 8899999998875433211 1122333 467799999986321222 334
Q ss_pred HHHHHhcC---CCCCEEEEEecCCcCHHHHhc
Q 023913 240 ERDALRMR---DGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 240 ~~~i~~~~---~~~~ii~~S~~~~~g~~~l~~ 268 (275)
.+.++.+. +..+++++|+++|.|+++++.
T Consensus 185 ~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 185 LKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 44445554 347899999999999987443
No 273
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.66 E-value=3.8e-09 Score=93.51 Aligned_cols=73 Identities=15% Similarity=-0.036 Sum_probs=41.4
Q ss_pred EEEeCCCCCCcccc--cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcC-CCCCEEEEEecCCcCHHHHhcc
Q 023913 197 YIIDVSGGDKIPRK--GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 197 lllD~t~g~d~~~~--~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
+++|++........ .... ...+-++|+||+|+.+......+.++..+..+. +..+++++|++++.|++++++.
T Consensus 168 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 168 AVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp EEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHH
T ss_pred EEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHH
Confidence 57787665432221 1111 134568999999998652112222221111111 2357899999999999888764
No 274
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.65 E-value=1.2e-09 Score=105.35 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=44.9
Q ss_pred CceEEEEeCCCCCCcccccc--ccc--cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 193 DYIIYIIDVSGGDKIPRKGG--PGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~~--~~i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+..|+++|++...+...... ... ..+-+||+||+|+........+.+++....+ +.+++++||+++.|+++++.
T Consensus 123 d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 123 SVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI--ENRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp EEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG--TTCEEECCC-----CTTHHH
T ss_pred cEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc--CCceEEEecCcccCHHHHHH
Confidence 56778889876533221110 011 2566899999999865333445555555444 46799999999999999887
Q ss_pred cc
Q 023913 269 IT 270 (275)
Q Consensus 269 ~~ 270 (275)
.+
T Consensus 201 ~l 202 (535)
T 3dpu_A 201 SL 202 (535)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 275
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.65 E-value=6.7e-08 Score=81.28 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.9
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~ 118 (275)
..+|++++|+|+||||||||++.+++ .+.+++.++..+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence 46799999999999999999999999 3446676666543
No 276
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.65 E-value=5.6e-08 Score=90.62 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=61.0
Q ss_pred ccccccChhHHHHHHH-HHHhc--CceEEEEeCCCCC-Cccccc----ccccccc-CEEEEecCCCCccch--hhHHHHH
Q 023913 172 DLLLCESGGDNLAANF-SRELA--DYIIYIIDVSGGD-KIPRKG----GPGITQA-DLLVINKTDLASAIG--ADLAVME 240 (275)
Q Consensus 172 d~~~~eS~G~~q~~~l-aral~--~~~vlllD~t~g~-d~~~~~----~~~i~~a-diivlNK~Dl~~~~~--~~~~~~~ 240 (275)
...+++++|...-... .+.+. +..|+++|++.+. ..+... ...+... -++++||+|+.+... ...+++.
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 4556778886543222 22222 8899999998775 322211 1122333 356799999987521 1233444
Q ss_pred HHHHhc-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913 241 RDALRM-RDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 241 ~~i~~~-~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+.+... ....+++++|++++.|+++|++.+.
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 444432 2367999999999999999987553
No 277
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.64 E-value=2.3e-09 Score=93.43 Aligned_cols=77 Identities=5% Similarity=-0.010 Sum_probs=44.3
Q ss_pred CceEEEEeCCCCCCcccccc--------ccccccCEEEEe-cCCCCccchhh-H-----HHHHHHHHhcCC----CCCEE
Q 023913 193 DYIIYIIDVSGGDKIPRKGG--------PGITQADLLVIN-KTDLASAIGAD-L-----AVMERDALRMRD----GGPFI 253 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~~--------~~i~~adiivlN-K~Dl~~~~~~~-~-----~~~~~~i~~~~~----~~~ii 253 (275)
+..|+++|++.......... ..+..+.++|+| |+|+....... + +.+.+.+..+.. ..+ +
T Consensus 107 d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~ 185 (260)
T 2xtp_A 107 HVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNN-R 185 (260)
T ss_dssp SEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCT-T
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecC-c
Confidence 77889999875221111110 111446788888 99998541111 0 123334444432 222 7
Q ss_pred EEEecCCcCHHHHhccc
Q 023913 254 FAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 254 ~~S~~~~~g~~~l~~~~ 270 (275)
++|++++.|+++++..+
T Consensus 186 ~~SA~~~~gv~~l~~~i 202 (260)
T 2xtp_A 186 AEGSNQDDQVKELMDCI 202 (260)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 88999999999998754
No 278
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.64 E-value=6.8e-09 Score=104.58 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=29.3
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+.+...+..+|++++|+||||||||||||+++|+.
T Consensus 597 vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44444555779999999999999999999999974
No 279
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.63 E-value=3.4e-08 Score=96.47 Aligned_cols=96 Identities=27% Similarity=0.237 Sum_probs=61.2
Q ss_pred ccccccChhHHH-HHHHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913 172 DLLLCESGGDNL-AANFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL 244 (275)
Q Consensus 172 d~~~~eS~G~~q-~~~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~ 244 (275)
...+++++|... .....+.+. +..|+++|++.+...+... ......+-++++||+|+... ..+.+.+.+.
T Consensus 74 ~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a---~~~~v~~el~ 150 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA---DVDRVKKQIE 150 (600)
T ss_dssp EEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC---CHHHHHHHHH
T ss_pred EEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc---CHHHHHHHHH
Confidence 444666777543 222334443 8999999999886544321 11234567889999999765 2333444444
Q ss_pred hcCC--CCCEEEEEecCCcCHHHHhccc
Q 023913 245 RMRD--GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 245 ~~~~--~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+... ..+++++|+++|.|++++++.+
T Consensus 151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 151 EVLGLDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp HTSCCCGGGCEECBTTTTBSHHHHHHHH
T ss_pred HhhCCCcccEEEEEeecCCCchHHHHHH
Confidence 4332 1359999999999999998753
No 280
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.63 E-value=1.7e-08 Score=98.63 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=60.2
Q ss_pred ccccccChhHHHH-HHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913 172 DLLLCESGGDNLA-ANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL 244 (275)
Q Consensus 172 d~~~~eS~G~~q~-~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~ 244 (275)
...+++++|...- ....+.+ ++..|+++|++.+...+... ......+-++|+||+|+.... .+.+.+.+.
T Consensus 72 ~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~---~~~v~~ei~ 148 (599)
T 3cb4_D 72 QLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD---PERVAEEIE 148 (599)
T ss_dssp EEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC---HHHHHHHHH
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc---HHHHHHHHH
Confidence 4446667775322 2233334 38999999998886544321 111245668899999998652 233333333
Q ss_pred hcCC--CCCEEEEEecCCcCHHHHhccc
Q 023913 245 RMRD--GGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 245 ~~~~--~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
+... ..+++++|+++|.|++++++.+
T Consensus 149 ~~lg~~~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 149 DIVGIDATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp HHTCCCCTTCEEECTTTCTTHHHHHHHH
T ss_pred HHhCCCcceEEEeecccCCCchhHHHHH
Confidence 3322 2469999999999999998754
No 281
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.63 E-value=8.4e-09 Score=96.12 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=54.9
Q ss_pred cccccccChhHHHHHH-HHHHh--cCceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchhhH----HH
Q 023913 171 ADLLLCESGGDNLAAN-FSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADL----AV 238 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~-laral--~~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~~~----~~ 238 (275)
....+.++.|..+-.. ..+.+ ++..|+++|++.+...+... ......+. ++++||+|+.+.. ... ++
T Consensus 75 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~-~~~~~~~~~ 153 (405)
T 2c78_A 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP-ELLDLVEME 153 (405)
T ss_dssp CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH-HHHHHHHHH
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH-HHHHHHHHH
Confidence 4556677777654222 22223 38999999998875433221 12234554 5789999998531 222 23
Q ss_pred HHHHHHhcCC---CCCEEEEEecCCcC
Q 023913 239 MERDALRMRD---GGPFIFAQVGWVIG 262 (275)
Q Consensus 239 ~~~~i~~~~~---~~~ii~~S~~~~~g 262 (275)
+.+.+..+.. ..+++++|++++.+
T Consensus 154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 154 VRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEccHHHhhh
Confidence 4455555442 47899999999987
No 282
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.62 E-value=6e-08 Score=96.44 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
..++..++|+|..|+|||||+|.|+|.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345788999999999999999999985
No 283
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.61 E-value=1.5e-08 Score=92.79 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913 68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (275)
Q Consensus 68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d 117 (275)
.+++.+. +...+|++++|+|+||||||||+++|+|++.|+ |.+.+.+.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 4444444 666889999999999999999999999999999 888777643
No 284
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.61 E-value=3.1e-08 Score=89.00 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=41.5
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC--CC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGAL 133 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~--~~-g~i~i~~~d~~~~~~~~~~~~ig~v 133 (275)
.+|++++|+|+||||||||+++|++++. |+ |++.++..+-.... ...++.+|++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~-~~~~~~~~~v 134 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP-NQVLKERGLM 134 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC-HHHHHHHTCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc-HHHHHhCCEe
Confidence 5699999999999999999999999988 87 99988543322222 2345567776
No 285
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.61 E-value=1.7e-08 Score=92.38 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..+|+++.|+||||||||||++.+++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999999987
No 286
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.61 E-value=3.4e-08 Score=84.91 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
...++|+|++|+|||||++.|+|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 45799999999999999999999644
No 287
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.60 E-value=1.5e-09 Score=91.92 Aligned_cols=74 Identities=11% Similarity=-0.083 Sum_probs=45.4
Q ss_pred CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|.+....... .....+ ..+-++|+||+|+.+.. ..+...+..+.. +.+++++|++++.|+++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKK--NLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCS--SCGGGCCHHHHH--TCEEEECBGGGTBTTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccc--ccHHHHHHHHHc--CCEEEEEeCCCCCCHHH
Confidence 67888889775422111 110111 34568899999997652 111222222232 46899999999999999
Q ss_pred Hhccc
Q 023913 266 TLSIT 270 (275)
Q Consensus 266 l~~~~ 270 (275)
++..+
T Consensus 165 l~~~l 169 (221)
T 3gj0_A 165 PFLWL 169 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 288
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.60 E-value=2.8e-08 Score=91.79 Aligned_cols=94 Identities=5% Similarity=-0.026 Sum_probs=56.1
Q ss_pred cccccChhHHHHHH-HHHH--hcCceEEEEeCCCCCCccccc----cccccccC-EEEEe-cCCCCccchhhHH----HH
Q 023913 173 LLLCESGGDNLAAN-FSRE--LADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVIN-KTDLASAIGADLA----VM 239 (275)
Q Consensus 173 ~~~~eS~G~~q~~~-lara--l~~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlN-K~Dl~~~~~~~~~----~~ 239 (275)
..+.+++|+.+-.. ..+. .++..|+++| ..+...+.+. ...+..+. ++++| |+|+ +. ...+ ++
T Consensus 62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~--~~~~~~~~~i 137 (370)
T 2elf_A 62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM--HAIDELKAKL 137 (370)
T ss_dssp EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH--HHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH--HHHHHHHHHH
Confidence 44455666543221 1222 2388999999 6664433211 12234556 88899 9999 54 3333 33
Q ss_pred HHHHHhcC-CCCCEEE--EEecC---CcCHHHHhccc
Q 023913 240 ERDALRMR-DGGPFIF--AQVGW---VIGIIFTLSIT 270 (275)
Q Consensus 240 ~~~i~~~~-~~~~ii~--~S~~~---~~g~~~l~~~~ 270 (275)
++.++... ...++++ +||++ ++|++++++.+
T Consensus 138 ~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l 174 (370)
T 2elf_A 138 KVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARI 174 (370)
T ss_dssp HHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHH
T ss_pred HHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHH
Confidence 34343332 3478999 99999 99999988744
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.60 E-value=5.7e-09 Score=93.32 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=64.3
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCC----cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g----~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~ 154 (275)
.++.+++|+|++|||||||.+.|.+++.+.| .+.++..|..-... ..+.++.+-..+. .....-+++.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~-~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-EDQLKLNEQFKNN-KLLQGRGLPGTHDMKL 106 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTC-GGGSSSCSTTSBCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-HHHHHHhcccccc-chhhhccCcchhHHHH
Confidence 3578999999999999999999999987643 33342433221121 2222221100000 0000011222222222
Q ss_pred HHHHHHHHHHhhcc------cc---cccccccChhHHHHHHHH--HHhcCceEEEEe-CCCCCCc
Q 023913 155 ISINLGPLEELSNL------FK---ADLLLCESGGDNLAANFS--RELADYIIYIID-VSGGDKI 207 (275)
Q Consensus 155 ~~~~~~~L~~l~~~------~~---~d~~~~eS~G~~q~~~la--ral~~~~vlllD-~t~g~d~ 207 (275)
+ .+.|..+... .. ..+-...|+||.||+++| +++ +++|+|+| ++.+.+.
T Consensus 107 l---~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~ 167 (290)
T 1odf_A 107 L---QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNP 167 (290)
T ss_dssp H---HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCC
T ss_pred H---HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCc
Confidence 2 2234433221 00 111111299999998886 555 99999999 6676665
No 290
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.59 E-value=5.7e-09 Score=102.38 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=56.6
Q ss_pred cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCC-------Cccccc----ccccccc-CEEEEecCCCCccchhh
Q 023913 171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGD-------KIPRKG----GPGITQA-DLLVINKTDLASAIGAD 235 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~-------d~~~~~----~~~i~~a-diivlNK~Dl~~~~~~~ 235 (275)
....+.+++|+.+-......-+ +..|+++|++.+. ..+... ...+... -+||+||+|+.+.....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 4556777888765444333222 7889999987651 111110 1112333 46779999998732233
Q ss_pred HHHHH----HHHHhcCC---CCCEEEEEecCCcCHHHH
Q 023913 236 LAVME----RDALRMRD---GGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 236 ~~~~~----~~i~~~~~---~~~ii~~S~~~~~g~~~l 266 (275)
.+.+. +.+..+.- ..+++++||++|.|++++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 33333 33333321 578999999999999865
No 291
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.57 E-value=5.9e-08 Score=90.20 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=60.6
Q ss_pred cccccccChhHHHHHHHH-HHhc--CceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchhhH----HH
Q 023913 171 ADLLLCESGGDNLAANFS-RELA--DYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADL----AV 238 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~la-ral~--~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~~~----~~ 238 (275)
....+.+++|..+-.... +.+. +..|+++|++.+...+... ......+. ++++||+|+.+.. ... ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~-~~~~~~~~~ 144 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELE 144 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH-HHHHHHHHH
Confidence 456677888876533322 2232 7889999998876443221 11234554 5789999998531 222 34
Q ss_pred HHHHHHhcCC---CCCEEEEEecCCcC----------HHHHhccc
Q 023913 239 MERDALRMRD---GGPFIFAQVGWVIG----------IIFTLSIT 270 (275)
Q Consensus 239 ~~~~i~~~~~---~~~ii~~S~~~~~g----------~~~l~~~~ 270 (275)
+.+.+++..- ..+++++|++++.+ +++|++.+
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV 189 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence 4455554431 47899999999763 77777643
No 292
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.57 E-value=1e-08 Score=89.42 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=46.5
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHH---hccCCC-CcEE--------EEeccCCC-CChHHHHHhccccCch
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIFT-KEDGEFLMRNGALPEE 136 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~---g~l~~~-g~i~--------i~~~d~~~-~~~~~~~~~ig~v~q~ 136 (275)
...+|++++|+||+||||||++++|+ |+..++ |.+. ..+.++.. .....+++.+++++|.
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 34679999999999999999999999 887777 8776 55555532 2345677788888865
No 293
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.57 E-value=4e-08 Score=86.57 Aligned_cols=75 Identities=12% Similarity=-0.035 Sum_probs=35.7
Q ss_pred ceEEEEeCCC-CCCcccc-ccccc--cccCEEEEecCCCCccchhhHHHHHHHHHhc--CCCCCEEEEEecCCcCHHHHh
Q 023913 194 YIIYIIDVSG-GDKIPRK-GGPGI--TQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 194 ~~vlllD~t~-g~d~~~~-~~~~i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~--~~~~~ii~~S~~~~~g~~~l~ 267 (275)
..++++|++. +...... ....+ ..+-++|+||+|+.+. .+++.+.+.+.+. ..+.+++.+|+++++|+++++
T Consensus 118 ~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 118 CCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp EEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 5677777654 3322111 11111 4566889999999876 4554444433322 235678889999999998876
Q ss_pred ccc
Q 023913 268 SIT 270 (275)
Q Consensus 268 ~~~ 270 (275)
+.+
T Consensus 196 ~~l 198 (274)
T 3t5d_A 196 KKI 198 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 294
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.57 E-value=9.1e-08 Score=92.26 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=37.9
Q ss_pred cccccccChhHHHHH-HHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913 171 ADLLLCESGGDNLAA-NFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA 231 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~-~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~ 231 (275)
....++++.|+..-. ...+.+. +..|+++|++.+...+... ......+-++|+||+|+...
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 445667777764322 2223333 8899999998876543321 11234567899999999754
No 295
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.57 E-value=1e-08 Score=91.60 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.-+.++|+|+.|||||||++.|+|.-
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 45789999999999999999999964
No 296
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.55 E-value=1.1e-08 Score=85.17 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=45.1
Q ss_pred cCceEEEEeCCCCCCc--ccccc---cc----ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913 192 ADYIIYIIDVSGGDKI--PRKGG---PG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 262 (275)
Q Consensus 192 ~~~~vlllD~t~g~d~--~~~~~---~~----i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g 262 (275)
++..++++|.+..... ..... .. -..+-++|.||+|+........+......... +.+++++||++|.|
T Consensus 81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~--~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF--DXKFIETSAAVQHN 158 (192)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHh--CCceEEeccccCCC
Confidence 3778888887643111 00000 00 12445788999999753212223222222222 46899999999999
Q ss_pred HHHHhccc
Q 023913 263 IIFTLSIT 270 (275)
Q Consensus 263 ~~~l~~~~ 270 (275)
+++++..+
T Consensus 159 v~~lf~~l 166 (192)
T 2cjw_A 159 VKELFEGI 166 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 297
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.54 E-value=6.7e-09 Score=86.34 Aligned_cols=77 Identities=16% Similarity=0.019 Sum_probs=44.5
Q ss_pred CceEEEEeCCCCCCcc-ccc---cccc-----cccCEEEEecCCCCccch--hhHHHH----HHHHHh-c--CCCCCEEE
Q 023913 193 DYIIYIIDVSGGDKIP-RKG---GPGI-----TQADLLVINKTDLASAIG--ADLAVM----ERDALR-M--RDGGPFIF 254 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~-~~~---~~~i-----~~adiivlNK~Dl~~~~~--~~~~~~----~~~i~~-~--~~~~~ii~ 254 (275)
+..|+++|.+...... ... ...+ ..+-++|.||+|+.+... .....+ .+.+.+ . ..+.++++
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e 176 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYL 176 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEE
Confidence 7789999987641110 000 0111 345578899999976410 111111 112222 1 23568999
Q ss_pred EEecCCcCHHHHhccc
Q 023913 255 AQVGWVIGIIFTLSIT 270 (275)
Q Consensus 255 ~S~~~~~g~~~l~~~~ 270 (275)
+|+++ +|+++++..+
T Consensus 177 ~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 177 TSIYD-HSIFEAFSKV 191 (196)
T ss_dssp ECTTS-THHHHHHHHH
T ss_pred EEech-hhHHHHHHHH
Confidence 99999 9999998754
No 298
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.54 E-value=2.6e-08 Score=83.72 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.+|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3588999999999999999999999875
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.54 E-value=4.1e-07 Score=81.31 Aligned_cols=175 Identities=20% Similarity=0.102 Sum_probs=88.9
Q ss_pred cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154 (275)
Q Consensus 76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~ 154 (275)
.+. ++++++|+|+||+||||++..|++++.+. +++.+.+.|+............ .....+...+.......
T Consensus 94 ~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~-------~~~~~l~~~~~~~~~~p 165 (295)
T 1ls1_A 94 VLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------GEKVGVPVLEVMDGESP 165 (295)
T ss_dssp CCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHH-------HHHHTCCEEECCTTCCH
T ss_pred ecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHh-------cccCCeEEEEcCCCCCH
Confidence 344 89999999999999999999999999877 8999999887531110000000 00000000000000000
Q ss_pred HHHHHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-CceEEEEeCCCCCCcccccccccc--c-cCEEE
Q 023913 155 ISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--Q-ADLLV 222 (275)
Q Consensus 155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~-adiiv 222 (275)
.......+..+ ....+|+++++++|. .+...+.+.+. +..++++|+..+.+..... ..+. . ..-+|
T Consensus 166 ~~l~~~~l~~~-~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~-~~~~~~~~i~giv 243 (295)
T 1ls1_A 166 ESIRRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA-RAFDEKVGVTGLV 243 (295)
T ss_dssp HHHHHHHHHHH-HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH-HHHHHHTCCCEEE
T ss_pred HHHHHHHHHHH-HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH-HHHhhcCCCCEEE
Confidence 01112234333 123578888884432 22223333344 5667788876553322111 1121 1 24589
Q ss_pred EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
+||.|.....+. +.+.+... +.||.+++ .|+.++++..
T Consensus 244 lnk~d~~~~~g~----~~~~~~~~--~~pi~~i~--~g~~~~dl~~ 281 (295)
T 1ls1_A 244 LTKLDGDARGGA----ALSARHVT--GKPIYFAG--VSEKPEGLEP 281 (295)
T ss_dssp EECGGGCSSCHH----HHHHHHHH--CCCEEEEC--------CCEE
T ss_pred EECCCCCccHHH----HHHHHHHH--CcCEEEEe--CCCCcccccc
Confidence 999997655322 22333333 57888876 4776665543
No 300
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.53 E-value=9e-08 Score=90.03 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=59.3
Q ss_pred ccccccccChhHHHHHHHHHH-hc--CceEEEEeCCCC-------CCccccc----ccccccc-CEEEEecCCCCccc--
Q 023913 170 KADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGG-------DKIPRKG----GPGITQA-DLLVINKTDLASAI-- 232 (275)
Q Consensus 170 ~~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g-------~d~~~~~----~~~i~~a-diivlNK~Dl~~~~-- 232 (275)
.....+.+++|+.+-...... +. +..|+++|++.+ ...+.+. ...+..+ -++++||+|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 345667788887654433332 22 789999998875 2111111 1122334 46789999998631
Q ss_pred hhh----HHHHHHHHHhcC--C-CCCEEEEEecCCcCHHHHhc
Q 023913 233 GAD----LAVMERDALRMR--D-GGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 233 ~~~----~~~~~~~i~~~~--~-~~~ii~~S~~~~~g~~~l~~ 268 (275)
... .+++.+.++.+. + ..+++++|+++|.|+.++.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 122 334444554443 2 37899999999999875543
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.53 E-value=1.2e-07 Score=79.45 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchh
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
.+|++++|+|+||||||||+++|++.+ |.+.+.+.++.. .........|+++|+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~-~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHS-PENIATMQRGIPLTDE 81 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSC-HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccccc-HHHHHHHhcCCCCCCc
Confidence 469999999999999999999999987 677777766542 1112223578888864
No 302
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.51 E-value=1.3e-07 Score=93.96 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=38.8
Q ss_pred cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913 171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA 231 (275)
Q Consensus 171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~ 231 (275)
....+++++|... .....+++ ++..|+++|++.+...+... ......+-++|+||+|+...
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 4556677777632 22223333 38999999998876543221 12235677899999999764
No 303
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.51 E-value=8.2e-08 Score=99.33 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=61.2
Q ss_pred cccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchhhH----HH
Q 023913 171 ADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADL----AV 238 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~~~----~~ 238 (275)
....+.+++|+.+-...... +. +..|+++|++.+...+.+. ......+. +|++||+|+.+.. ..+ ++
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~-e~le~i~eE 437 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE-ELLELVEME 437 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH-HHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch-hhHHHHHHH
Confidence 45567778887664433322 22 7899999998875443321 11234554 6789999998531 212 34
Q ss_pred HHHHHHhcC---CCCCEEEEEecCC--------cCHHHHhcc
Q 023913 239 MERDALRMR---DGGPFIFAQVGWV--------IGIIFTLSI 269 (275)
Q Consensus 239 ~~~~i~~~~---~~~~ii~~S~~~~--------~g~~~l~~~ 269 (275)
+.+.+++.. ...+++++|+++| +|++++++.
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLlea 479 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGF 479 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhH
Confidence 445555543 2478999999998 467777754
No 304
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.51 E-value=2.3e-07 Score=92.39 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=39.1
Q ss_pred cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913 171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA 231 (275)
Q Consensus 171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~ 231 (275)
....+++++|... .....+++ ++..|+++|++.+...+... ......+-++++||+|+...
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 5566778888643 22333444 38999999998876433211 11234567899999998754
No 305
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.50 E-value=2.5e-08 Score=89.10 Aligned_cols=77 Identities=13% Similarity=0.046 Sum_probs=46.1
Q ss_pred CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913 193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF 252 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i 252 (275)
+..++++|.+....... .....+ ..+-++|+||+|+..... ...+...+..+.. ...++
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 306 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY 306 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc-CCcEE
Confidence 67788889766432111 110111 345688999999965410 1122333333333 22489
Q ss_pred EEEEecCCcCHHHHhccc
Q 023913 253 IFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 253 i~~S~~~~~g~~~l~~~~ 270 (275)
+++|++++.|++++++.+
T Consensus 307 ~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEA 324 (332)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHH
Confidence 999999999999998754
No 306
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.48 E-value=4.7e-09 Score=90.67 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~ 118 (275)
++++|+|||||||||||++|+|++.|+ |.|.+.+.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 789999999999999999999999998 9999888776
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.48 E-value=5.5e-08 Score=80.65 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.6
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
+++++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5689999999999999999999998755
No 308
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.47 E-value=5.2e-09 Score=100.23 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHH-------hcCCCCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL-------RMRDGGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~-------~~~~~~~ii~~S~~~~~ 261 (275)
+..|+++|++.+...+... ......+-++++||+|+..... +++.+.+. .+....+++++|+++|.
T Consensus 76 D~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~---~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 76 DIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP---DRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp SSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC---CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred CEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH---HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 7789999988776544321 1123456688899999975310 11111111 11223689999999999
Q ss_pred CHHHHhccc
Q 023913 262 GIIFTLSIT 270 (275)
Q Consensus 262 g~~~l~~~~ 270 (275)
|++++++.+
T Consensus 153 gI~eLle~I 161 (501)
T 1zo1_I 153 GIDELLDAI 161 (501)
T ss_dssp TCTTHHHHT
T ss_pred Ccchhhhhh
Confidence 999998865
No 309
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.47 E-value=5.3e-09 Score=98.53 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=74.8
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc---hHHHH-
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IREDI- 155 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~---~~~~~- 155 (275)
..+++|+|++|+||||++..|++.+... .++.++..|+......+..+.. ....+.+... ...+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~----------~~~~gv~v~~~~~~~~dp~ 168 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQL----------AEKIHVPIYGDETRTKSPV 168 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHH----------HHHSSCCEECCSSSCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHh----------hhccCcceEecCCCCCCHH
Confidence 4689999999999999999999988765 6799888887532211100000 0000110000 00000
Q ss_pred HHHHHHHHHhhcccccccccccChhHHHH-HHHH---HHh---c--CceEEEEeCCCCCCcccccccccc--c-c-CEEE
Q 023913 156 SINLGPLEELSNLFKADLLLCESGGDNLA-ANFS---REL---A--DYIIYIIDVSGGDKIPRKGGPGIT--Q-A-DLLV 222 (275)
Q Consensus 156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q~-~~la---ral---~--~~~vlllD~t~g~d~~~~~~~~i~--~-a-diiv 222 (275)
......+..+ ..++.+++++.|.... ..+. +.+ . +..++++|++.+.+..... ..+. . . ..+|
T Consensus 169 ~i~~~~l~~~---~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~-~~~~~~~~~i~gvV 244 (432)
T 2v3c_C 169 DIVKEGMEKF---KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQA-KAFKEAVGEIGSII 244 (432)
T ss_dssp TTHHHHHHTT---SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHH-HHHHTTSCSCEEEE
T ss_pred HHHHHHHHHh---hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHH-HHHhhcccCCeEEE
Confidence 0011244443 5678899997764321 1111 111 1 4566888987775432211 1122 2 3 6789
Q ss_pred EecCCCCcc
Q 023913 223 INKTDLASA 231 (275)
Q Consensus 223 lNK~Dl~~~ 231 (275)
+||+|....
T Consensus 245 lnK~D~~~~ 253 (432)
T 2v3c_C 245 VTKLDGSAK 253 (432)
T ss_dssp EECSSSCST
T ss_pred EeCCCCccc
Confidence 999998754
No 310
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.46 E-value=5.3e-09 Score=102.24 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=42.0
Q ss_pred cCceEEEEeCCCCC-------Cccccc----ccccccc-CEEEEecCCCCccchhhHHHHHHHHHhcC--------CCCC
Q 023913 192 ADYIIYIIDVSGGD-------KIPRKG----GPGITQA-DLLVINKTDLASAIGADLAVMERDALRMR--------DGGP 251 (275)
Q Consensus 192 ~~~~vlllD~t~g~-------d~~~~~----~~~i~~a-diivlNK~Dl~~~~~~~~~~~~~~i~~~~--------~~~~ 251 (275)
++..|+|+|++.+. ..+... ...+..+ -+||+||+|+.+......+.+.+.+..+. ...+
T Consensus 279 aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ 358 (592)
T 3mca_A 279 ADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVH 358 (592)
T ss_dssp ---CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEE
T ss_pred CCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceE
Confidence 37788999977643 222211 1123444 35689999997632233444444443322 1347
Q ss_pred EEEEEecCCcCHH
Q 023913 252 FIFAQVGWVIGII 264 (275)
Q Consensus 252 ii~~S~~~~~g~~ 264 (275)
++++|+++|.|++
T Consensus 359 ii~iSA~~G~gI~ 371 (592)
T 3mca_A 359 FVPISAISGTNLI 371 (592)
T ss_dssp EEEECSSSCSSSC
T ss_pred EEEEecccCcccc
Confidence 9999999999997
No 311
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.45 E-value=3.3e-11 Score=100.61 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=39.8
Q ss_pred CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|.+....... .....+ ..+-+||+||+|+.+......+..++....+ +.+++++|+++++|++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--GIPFLETSAKNATNVE 184 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--TCCBCCCCC---HHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--CCeEEEEECCCCCCHH
Confidence 56777888765422110 000001 3455788999999754211222233333333 4689999999999999
Q ss_pred HHhcccc
Q 023913 265 FTLSITH 271 (275)
Q Consensus 265 ~l~~~~~ 271 (275)
+++..+.
T Consensus 185 ~l~~~l~ 191 (199)
T 3l0i_B 185 QSFMTMA 191 (199)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988654
No 312
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.45 E-value=2.9e-07 Score=78.52 Aligned_cols=30 Identities=27% Similarity=0.159 Sum_probs=26.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHh--ccCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCK--FLRD 107 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g--~l~~ 107 (275)
..+|++++|+||||||||||++.|++ .+++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 45799999999999999999999999 4554
No 313
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.45 E-value=1.1e-07 Score=76.58 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g 109 (275)
+|+.++|+||+|||||||++++++.+.+.|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999887665
No 314
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=1.6e-08 Score=91.13 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE---EeccCCCCChHHHHH-hccccCchh
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLM-RNGALPEER 137 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i---~~~d~~~~~~~~~~~-~ig~v~q~~ 137 (275)
.+|++++|+|+||||||||+|+|+|.+++. |.|.+ .+....... ++.+ .+||++|.+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtp 232 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTP 232 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCC
Confidence 469999999999999999999999999887 99887 444433211 1122 267887764
No 315
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.45 E-value=1.5e-09 Score=104.77 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhh-HHHHHHH---HHhcCCCCCEEEEEecCCcCHH
Q 023913 193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGAD-LAVMERD---ALRMRDGGPFIFAQVGWVIGII 264 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~-~~~~~~~---i~~~~~~~~ii~~S~~~~~g~~ 264 (275)
+..|+++|++.+...+... ......+-++++||+|+....... .+.+.+. ........+++++|+++|.|++
T Consensus 77 D~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 77 DIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp SSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 7889999988776543321 111234567889999997532111 1112111 1112234589999999999999
Q ss_pred HHhccc
Q 023913 265 FTLSIT 270 (275)
Q Consensus 265 ~l~~~~ 270 (275)
++++.+
T Consensus 157 eLle~I 162 (537)
T 3izy_P 157 ALAEAT 162 (537)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 998754
No 316
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.44 E-value=3.8e-08 Score=88.36 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=43.2
Q ss_pred CceEEEEeCCCCCCccc--cc---cccc-----cccCEEEEecCCCCcc--ch----hhHHHHHHHHHhcC-CCCCEEEE
Q 023913 193 DYIIYIIDVSGGDKIPR--KG---GPGI-----TQADLLVINKTDLASA--IG----ADLAVMERDALRMR-DGGPFIFA 255 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~--~~---~~~i-----~~adiivlNK~Dl~~~--~~----~~~~~~~~~i~~~~-~~~~ii~~ 255 (275)
+..|+++|++....... .. ...+ ..+-++|+||+|+... .. ...+.+.+..+.+. |..+++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 67889999876532111 00 0111 3456888999999873 11 11133334444442 24789999
Q ss_pred EecCCcCHHHHhc
Q 023913 256 QVGWVIGIIFTLS 268 (275)
Q Consensus 256 S~~~~~g~~~l~~ 268 (275)
|+++ .++.+++.
T Consensus 162 Sa~~-~~i~e~~~ 173 (307)
T 3r7w_A 162 SIWD-ESLYKAWS 173 (307)
T ss_dssp CTTS-SHHHHHHH
T ss_pred eecC-ChHHHHHH
Confidence 9999 65555543
No 317
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=4.7e-08 Score=89.90 Aligned_cols=44 Identities=11% Similarity=-0.054 Sum_probs=24.0
Q ss_pred ccCEEEEecCCCCccchhhHHHHHHHHHhcC--CCCCEEEEEecCCcC
Q 023913 217 QADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIG 262 (275)
Q Consensus 217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~--~~~~ii~~S~~~~~g 262 (275)
.+-++|+||+|+.+. .++..+.+.+.+.. .+.+++++|++++.+
T Consensus 175 ~piIlV~NK~Dl~~~--~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 175 VNIVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp SCEEEEEECCSSSCH--HHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred CCEEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 456889999999876 44444333333322 257899999998887
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.43 E-value=6.4e-08 Score=82.83 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=21.3
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHH-hccCC
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALC-KFLRD 107 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~-g~l~~ 107 (275)
..++...+|++++|+||||||||||+++|+ +++++
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 344445679999999999999999999999 98754
No 319
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.42 E-value=1.1e-07 Score=90.04 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=57.3
Q ss_pred cccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCc-------cccc----ccccccc-CEEEEecCCCCccchhh
Q 023913 171 ADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKI-------PRKG----GPGITQA-DLLVINKTDLASAIGAD 235 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~-------~~~~----~~~i~~a-diivlNK~Dl~~~~~~~ 235 (275)
....+.+++|+.+-...... +. +..|+++|++.+... +... ......+ -++++||+|+.+.....
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH
Confidence 45667778887654433322 22 788999998865311 1111 1122344 46679999998421122
Q ss_pred H----HHHHHHHHhcCC---CCCEEEEEecCCcCHHHHh
Q 023913 236 L----AVMERDALRMRD---GGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 236 ~----~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~l~ 267 (275)
. +++.+.++.+.- ..+++++|+++|.|++++.
T Consensus 165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 2 334444444431 3789999999999997654
No 320
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.42 E-value=3.5e-08 Score=90.25 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+...++|+|..|||||||++.|+|.-
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999963
No 321
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.41 E-value=4.1e-08 Score=95.90 Aligned_cols=78 Identities=17% Similarity=0.009 Sum_probs=49.0
Q ss_pred CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccch----------------hhHH-------HHHHHHHh
Q 023913 193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIG----------------ADLA-------VMERDALR 245 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~----------------~~~~-------~~~~~i~~ 245 (275)
+..|+++|++.|...+... ......+-++++||+|+..... ...+ .+.+.+.+
T Consensus 95 D~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e 174 (594)
T 1g7s_A 95 DLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHE 174 (594)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999886544321 1123456689999999974210 0001 12222222
Q ss_pred c-------------CCCCCEEEEEecCCcCHHHHhccc
Q 023913 246 M-------------RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 246 ~-------------~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
. ....+++++||++|.|+++|++.+
T Consensus 175 ~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I 212 (594)
T 1g7s_A 175 EGFESERFDRVTDFASQVSIIPISAITGEGIPELLTML 212 (594)
T ss_dssp TTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHH
T ss_pred cCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHH
Confidence 1 123489999999999999998764
No 322
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.41 E-value=2.6e-07 Score=77.58 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+...++|+|+.|+|||||++.|++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35679999999999999999999863
No 323
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.37 E-value=1.3e-07 Score=89.91 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=53.6
Q ss_pred cccccccChhHHHHHHH-HHHh--cCceEEEEeCCCCCC-------ccccc----ccccccc-CEEEEecCCCCccc--h
Q 023913 171 ADLLLCESGGDNLAANF-SREL--ADYIIYIIDVSGGDK-------IPRKG----GPGITQA-DLLVINKTDLASAI--G 233 (275)
Q Consensus 171 ~d~~~~eS~G~~q~~~l-aral--~~~~vlllD~t~g~d-------~~~~~----~~~i~~a-diivlNK~Dl~~~~--~ 233 (275)
....+.++.|..+-... .+.+ ++..|+++|++.+.. .+.+. ......+ -+|++||+|+.+.. .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 34567778887543222 2222 278999999887631 11111 1123445 36779999996421 1
Q ss_pred hh----HHHHHHHHHhc-C-C---CCCEEEEEecCCcCHHHHh
Q 023913 234 AD----LAVMERDALRM-R-D---GGPFIFAQVGWVIGIIFTL 267 (275)
Q Consensus 234 ~~----~~~~~~~i~~~-~-~---~~~ii~~S~~~~~g~~~l~ 267 (275)
.. .+++.+.++.+ . . ..+++++|+++|.|+++++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 12 23344555544 1 1 5679999999999998765
No 324
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.37 E-value=9.5e-08 Score=92.15 Aligned_cols=102 Identities=16% Similarity=0.060 Sum_probs=56.2
Q ss_pred cccccccChhHHH-HHHHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccch-hhHHHHHHH
Q 023913 171 ADLLLCESGGDNL-AANFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIG-ADLAVMERD 242 (275)
Q Consensus 171 ~d~~~~eS~G~~q-~~~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~-~~~~~~~~~ 242 (275)
....+++++|+.. .....+.+. +..|+++|++.+...+... ......+-++++||+|+..... ..++.+++.
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~ 161 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENE 161 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHH
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHH
Confidence 4556677777643 222333443 8999999998876543221 1122455688999999986521 123333333
Q ss_pred HHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913 243 ALRMRDGGPFIFAQVGWVIGIIFTLSITHY 272 (275)
Q Consensus 243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~ 272 (275)
+..-.....+...|++++.|+.+++....+
T Consensus 162 l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~ 191 (529)
T 2h5e_A 162 LKIGCAPITWPIGCGKLFKGVYHLYKDETY 191 (529)
T ss_dssp HCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred hCCCccceecceecccCcceeeehhhhhHh
Confidence 321100111222578888888877665444
No 325
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.36 E-value=3.7e-07 Score=76.00 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEeccCCCCChHHHHHhccccCchhH
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~ 138 (275)
.+|++++|+|++|||||||+++|++.+.|+ + .+.....+.. .. ....++|+++++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~---~~-~~~~~~~~~~~~~ 61 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMR---EG-EVDGVDYFFKTRD 61 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCC---TT-CCBTTTBEECCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCC---CC-ccCCCceEEcCHH
Confidence 468999999999999999999999998665 4 3322222211 00 1124778887654
No 326
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.35 E-value=1.2e-07 Score=82.43 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-.++|+|++|+|||||+|.|+|.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999999986
No 327
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.35 E-value=3.3e-07 Score=90.27 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=70.4
Q ss_pred EEEEcCCcchHHHHHHHHH---hccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 84 VGIGGPVGTGKTALMLALC---KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 84 v~IiG~nGaGKTTLl~~L~---g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
++|+|..++|||||...|+ |.+...|++. .+....+..+.+..|.|.+-.. ...+
T Consensus 5 i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~-~g~~~~D~~~~EreRGITI~s~----------~~~~----------- 62 (638)
T 3j25_A 5 IGVLAHVDAGKTTLTESLLYNSGAITELGSVD-KGTTRTDNTLLERQRGITIQTG----------ITSF----------- 62 (638)
T ss_dssp CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC-CSCCSTTCSTTHHHHSSCSSCC----------CCCC-----------
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCccccccc-cCCcccCCcHHHHhCCCcEEee----------eEEE-----------
Confidence 7999999999999998885 4444334442 1111222333444444433111 0011
Q ss_pred HHHHhhcccccccccccChhHH-HHHHHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913 161 PLEELSNLFKADLLLCESGGDN-LAANFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA 231 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~eS~G~~-q~~~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~ 231 (275)
........+++++|-. --....|+|. |..|+|+|+..|...+... ......+-++++||+|+...
T Consensus 63 ------~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 63 ------QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp ------BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred ------EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 1123344566666632 2233445554 9999999999998776532 22345677999999998654
No 328
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.32 E-value=1.3e-07 Score=83.65 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=42.9
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCch
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (275)
..+| ++|.||||||||||+++|++.+.+ +.+.+.+.++......+..+.+++++|.
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQR 98 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence 3456 999999999999999999998765 5777777776554445555677777765
No 329
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.31 E-value=1.9e-07 Score=92.82 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=54.3
Q ss_pred cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHH
Q 023913 171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDA 243 (275)
Q Consensus 171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i 243 (275)
....+++++|... .....+++ ++..|+++|++.+...+... ......+-++|+||+|+... +.+.+.+.+
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~---~~~~~~~~l 151 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA---NFEYSVSTL 151 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC---CHHHHHHHH
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc---chHHHHHHH
Confidence 4455667777532 11122233 48999999998876543211 12235667899999999865 223333333
Q ss_pred Hhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913 244 LRM---RDGGPFIFAQVGWVIGIIFTLSIT 270 (275)
Q Consensus 244 ~~~---~~~~~ii~~S~~~~~g~~~l~~~~ 270 (275)
++. ++...++++|+ +.+++.+++++
T Consensus 152 ~~~l~~~~~~~~ipisa--~~~~~~l~d~l 179 (693)
T 2xex_A 152 HDRLQANAAPIQLPIGA--EDEFEAIIDLV 179 (693)
T ss_dssp HHHHCCCEEESEEEECC--GGGCCEEEETT
T ss_pred HHHhCCCceeEEeeccc--CCCcceeeeee
Confidence 332 33455778776 66666555543
No 330
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.31 E-value=7.4e-09 Score=97.25 Aligned_cols=74 Identities=11% Similarity=-0.054 Sum_probs=46.4
Q ss_pred CceEEEEeCCCCCCccccc---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 193 DYIIYIIDVSGGDKIPRKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
+..|+++|+ ......... ......+-++|+||+|+.+.. ..+ ..+.+.+.. +.+++++|+++++|++++++.
T Consensus 115 D~vllVvD~-~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~--~~~-~~~~l~~~~-g~~v~~vSAktg~gI~eL~~~ 189 (423)
T 3qq5_A 115 DCGILVTDS-APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK--AEE-LKGLYESRY-EAKVLLVSALQKKGFDDIGKT 189 (423)
T ss_dssp SEEEEECSS-SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC--CTH-HHHHSSCCT-TCCCCCCSSCCTTSTTTHHHH
T ss_pred CEEEEEEeC-CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc--HHH-HHHHHHHHc-CCCEEEEECCCCCCHHHHHHH
Confidence 778889997 211111111 112355678999999998763 222 222232222 468999999999999999875
Q ss_pred cc
Q 023913 270 TH 271 (275)
Q Consensus 270 ~~ 271 (275)
+.
T Consensus 190 L~ 191 (423)
T 3qq5_A 190 IS 191 (423)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 331
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.30 E-value=8.7e-07 Score=85.80 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-..++|+|+.|+|||||+|.|+|.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999986
No 332
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.28 E-value=2.2e-07 Score=90.00 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=40.8
Q ss_pred cccccccChhHH-HHHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913 171 ADLLLCESGGDN-LAANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA 231 (275)
Q Consensus 171 ~d~~~~eS~G~~-q~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~ 231 (275)
....+++++|-. --....|+| +|..|+|+|+..|...+... ......+-++++||+|+...
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 344566666642 122334454 39999999999998876532 22346677899999998654
No 333
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.26 E-value=4.6e-07 Score=74.64 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEE
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAV 114 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~ 114 (275)
+|++++|+||+|||||||+++|++.+++ . +.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 5899999999999999999999998764 2 555443
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.26 E-value=1.6e-07 Score=78.64 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=34.8
Q ss_pred cccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcE--EEEeccC
Q 023913 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI 118 (275)
Q Consensus 76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i--~i~~~d~ 118 (275)
....+|++++|+|++|||||||.++|++.+...|.+ .+++.++
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 344679999999999999999999999998744776 6665443
No 335
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.25 E-value=3.1e-07 Score=75.89 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=29.0
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~ 118 (275)
|++++|+||||||||||+++|++. ..|.+.+.+.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~--~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ--LDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH--SSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc--cCCeEEEcccch
Confidence 678999999999999999999872 236677776543
No 336
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.24 E-value=5.4e-07 Score=78.47 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=48.2
Q ss_pred CceEEEEeCCCC--CCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913 193 DYIIYIIDVSGG--DKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 261 (275)
Q Consensus 193 ~~~vlllD~t~g--~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~ 261 (275)
+..|+++|.+.. ..... ..... -..+-+||.||+|+.+. ..++.+++..+.. .+.+++++||+++.
T Consensus 164 d~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~-~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYIRDAHTFALSK-KNLQVVETSARSNV 240 (255)
T ss_dssp CEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHHHHHHHHHHTS-SSCCEEECBTTTTB
T ss_pred CEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHHHHHHHHHHhc-CCCeEEEEECCCCC
Confidence 678899997754 21111 11001 13455888999999765 3344444444332 35789999999999
Q ss_pred CHHHHhcccc
Q 023913 262 GIIFTLSITH 271 (275)
Q Consensus 262 g~~~l~~~~~ 271 (275)
|++++++.+.
T Consensus 241 gv~elf~~l~ 250 (255)
T 3c5h_A 241 NVDLAFSTLV 250 (255)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987653
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.24 E-value=5.4e-07 Score=75.55 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=36.1
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~ 120 (275)
.++.+++|+|++|||||||++.|.+.+++. |.+.+.+.|...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 468999999999999999999999998876 788887766543
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.23 E-value=6.1e-07 Score=86.16 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=35.5
Q ss_pred cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (275)
Q Consensus 76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d 117 (275)
+...+|+.++|+|||||||||||++|+++++|+ |.+.+.+..
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 334679999999999999999999999999998 777766543
No 339
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.23 E-value=2e-07 Score=93.13 Aligned_cols=75 Identities=12% Similarity=-0.089 Sum_probs=45.0
Q ss_pred CceEEEEeCCCCCCcccc--cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhc----CCCCCEEEEEecCCcCH
Q 023913 193 DYIIYIIDVSGGDKIPRK--GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRM----RDGGPFIFAQVGWVIGI 263 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~~--~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~----~~~~~ii~~S~~~~~g~ 263 (275)
+-.++++|+..+...... ...+ ...+-++|+||+|+++..... ..+.+ .+. .+..+++++|++++.|+
T Consensus 189 DlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~-~~il~--~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 189 CLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA-RDVLE--NKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp EEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS-HHHHT--TCSSCCSSCEEECCCCCCEESSSS
T ss_pred cEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh-HHHHH--HHhhhhhccCCceEEecccccccc
Confidence 456778887765432221 1111 235678999999998762221 12211 122 23467899999999999
Q ss_pred HHHhccc
Q 023913 264 IFTLSIT 270 (275)
Q Consensus 264 ~~l~~~~ 270 (275)
++|++..
T Consensus 266 deL~eaI 272 (772)
T 3zvr_A 266 KDITAAL 272 (772)
T ss_dssp EEHHHHH
T ss_pred hhHHHHH
Confidence 8877643
No 340
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.7e-06 Score=70.88 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+...++|+|+.|||||||++.|++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999999863
No 341
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.17 E-value=1.1e-06 Score=74.12 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
.+|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 56999999999999999999999999876
No 342
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.17 E-value=4.8e-07 Score=78.12 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHH---hccCCC-CcEEEEec
Q 023913 80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAVTN 116 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~---g~l~~~-g~i~i~~~ 116 (275)
++++++|+|+||||||||+++|+ |+..++ |.+.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 47899999999999999999999 887777 77765543
No 343
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.16 E-value=2.4e-06 Score=79.55 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=24.7
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHH--HhccCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLAL--CKFLRD 107 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L--~g~l~~ 107 (275)
..+|+++.|+||+|||||||++.| .+++++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 457999999999999999999955 455554
No 344
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=6.4e-06 Score=74.31 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=30.8
Q ss_pred CcEEEEEcCCcchHHHHHHHHHh-ccCCC-CcEEEEeccCCCCChHHHHHhccccCchh
Q 023913 81 AFTVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g-~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~ 137 (275)
.+.+.|.||+|+|||||+++|++ ++.++ |.+.+.+.++... ......++++++..
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPY 92 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccc
Confidence 33499999999999999999999 67777 8888877654321 12245567776653
No 345
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.13 E-value=7.7e-07 Score=82.81 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=35.3
Q ss_pred cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913 216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 268 (275)
Q Consensus 216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~ 268 (275)
..+.++|+||+|+... ..++.+.+..... +++++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~~--~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASD--EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCH--HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccch--HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHh
Confidence 3678999999998732 4455555444332 47899999999999987654
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.12 E-value=1.7e-06 Score=74.12 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.0
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d 117 (275)
..+|++++|.|++|||||||+++|+++ .|++.+.+.+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~ 53 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEP 53 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecC
Confidence 356999999999999999999999998 5678877654
No 347
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.09 E-value=1.7e-06 Score=72.99 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
+|++++|+||+|||||||++.|++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999999875
No 348
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.09 E-value=2.1e-06 Score=69.86 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=37.3
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHH-hccccCch
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEE 136 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~-~ig~v~q~ 136 (275)
.+|++++|+|++|||||||++.|++.+ |.+.+.+.++.. ...+.+ ..|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 358999999999999999999999875 566666655432 112222 35666654
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.05 E-value=2.8e-06 Score=76.82 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=33.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccC--CC-CcEEEEeccCCCC
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTK 121 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~--~~-g~i~i~~~d~~~~ 121 (275)
.+++|+|++|||||||+++|.+++. ++ |++.++..|....
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 3899999999999999999999987 45 7888887765433
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.04 E-value=2.7e-06 Score=69.62 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
+| +++|+|+||||||||+++|.+++.+.
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45 99999999999999999999987765
No 351
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.00 E-value=5e-05 Score=71.36 Aligned_cols=143 Identities=21% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI 157 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~ 157 (275)
+..+++++|++|+||||+...|+..+... .++.++..|+......+..+..+ ....+...+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~-------~~~~l~v~~~~~~~dp~~i 171 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLA-------EQVGVDFFPSDVGQKPVDI 171 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHH-------HHHTCEECCCCSSSCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhc-------ccCCeeEEeCCCCCCHHHH
Confidence 35789999999999999999999776643 47888888875432211111000 0000000000000000111
Q ss_pred HHHHHHHhhcccccccccccChhHH-----HHHHHH---HHhc-CceEEEEeCCCCCCcccccccccc--cc-CEEEEec
Q 023913 158 NLGPLEELSNLFKADLLLCESGGDN-----LAANFS---RELA-DYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLVINK 225 (275)
Q Consensus 158 ~~~~L~~l~~~~~~d~~~~eS~G~~-----q~~~la---ral~-~~~vlllD~t~g~d~~~~~~~~i~--~a-diivlNK 225 (275)
....+..+ ....+|++++++.|.. ....++ ..+. +..++++|++.+.+..... ..+. .. .-||+||
T Consensus 172 ~~~~l~~~-~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~-~~f~~~l~i~gvVlnK 249 (433)
T 2xxa_A 172 VNAALKEA-KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA-KAFNEALPLTGVVLTK 249 (433)
T ss_dssp HHHHHHHH-HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH-HHHHHHSCCCCEEEEC
T ss_pred HHHHHHHH-HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH-HHHhccCCCeEEEEec
Confidence 12244433 1246799999966631 122222 2223 6778889988775542211 1121 22 4579999
Q ss_pred CCCCcc
Q 023913 226 TDLASA 231 (275)
Q Consensus 226 ~Dl~~~ 231 (275)
+|....
T Consensus 250 ~D~~~~ 255 (433)
T 2xxa_A 250 VDGDAR 255 (433)
T ss_dssp TTSSSC
T ss_pred CCCCcc
Confidence 998655
No 352
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.97 E-value=3.2e-06 Score=68.43 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.+.+++|+|++|||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999865
No 353
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.96 E-value=4.3e-06 Score=71.19 Aligned_cols=59 Identities=17% Similarity=0.010 Sum_probs=39.0
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHH-hccCCCCcEEEEeccCCCCChHHHHHhccccCch
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALC-KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~-g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (275)
..+|++++|+|+||||||||+..++ ...+..+++.++..+.....-.+..+.+|+.+|+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKP 79 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHH
Confidence 4679999999999999999966555 4444457787777654321112233456776654
No 354
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.93 E-value=3.7e-06 Score=81.39 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=32.6
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEe
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT 115 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~ 115 (275)
..+|++++|+|+||||||||+++|++.+.++ | .+.+..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD 405 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence 4579999999999999999999999999887 5 576443
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.93 E-value=7.4e-07 Score=75.44 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=23.1
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+.+++|+|++||||||+.++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 356
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.92 E-value=2.2e-06 Score=70.18 Aligned_cols=30 Identities=33% Similarity=0.382 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
.+|+.++|.||||+|||||++++++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999999987643
No 357
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.92 E-value=7.9e-06 Score=74.92 Aligned_cols=57 Identities=21% Similarity=0.095 Sum_probs=43.2
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCch
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~ 136 (275)
..+|.++.|.||+|||||||+..++..+.+. +++.++..+... +..+.+++|+.+++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPVYAKNLGVDLKS 115 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHHHHHHHTCCGGG
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chHHHHHcCCchhh
Confidence 3569999999999999999999999987766 778777655332 23456677876554
No 358
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.90 E-value=7e-06 Score=76.19 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=32.7
Q ss_pred ccccCEEEEecCCC--CccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913 215 ITQADLLVINKTDL--ASAIGADLAVMERDALRMRDGGPFIFAQVGW 259 (275)
Q Consensus 215 i~~adiivlNK~Dl--~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~ 259 (275)
...+-++++|+.|. .......++.+++++.+.+|+++++++|++.
T Consensus 223 t~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 223 TAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred ccCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 35677889999873 2011245777888888877889999999875
No 359
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.90 E-value=1.1e-06 Score=75.94 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=29.8
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~ 118 (275)
..+| ++|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~ 85 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 85 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHH
Confidence 3446 99999999999999999999864 45666665543
No 360
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.89 E-value=5.2e-06 Score=72.68 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.7
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
...++|+|..|+|||||++.|++.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999985
No 361
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.89 E-value=1.2e-06 Score=76.97 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~ 118 (275)
.+| ++|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus 73 ~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~ 109 (278)
T 1iy2_A 73 PKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 109 (278)
T ss_dssp CCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred CCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence 446 99999999999999999999864 46666665544
No 362
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.86 E-value=7.8e-06 Score=67.17 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=32.9
Q ss_pred ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (275)
Q Consensus 73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~ 115 (275)
++.....+|.++.|+|++||||||+.+.|+..+.+. +.+.+..
T Consensus 5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp ---CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 334445579999999999999999999999988765 5665543
No 363
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.86 E-value=3.1e-05 Score=70.50 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=80.2
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHH
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~ 156 (275)
..+|+++.|.|++|+|||||+..++...... +.+.++..+.. ..++..++-. ...+.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms---~~ql~~Rlls---------~~~~v---------- 100 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS---AEQLALRALS---------DLTSI---------- 100 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC---HHHHHHHHHH---------HHHCC----------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC---HHHHHHHHHH---------HhhCC----------
Confidence 4679999999999999999998888755434 67888776543 3333332100 00000
Q ss_pred HHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEeCCC-CCC-ccccccc---cccccCEEEEecCCCCc
Q 023913 157 INLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSG-GDK-IPRKGGP---GITQADLLVINKTDLAS 230 (275)
Q Consensus 157 ~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD~t~-g~d-~~~~~~~---~i~~adiivlNK~Dl~~ 230 (275)
.+..+.. ... +.++.+++..|...+ +.+++|.|.+. ..+ ...+... .....++||+.-..++.
T Consensus 101 ----~~~~l~~---g~L----s~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 101 ----NMHDLES---GRL----DDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp ----CHHHHHH---TCC----CHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred ----CHHHHhc---CCC----CHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence 0111100 012 677777777766655 66777777432 111 1111111 11135677766544443
Q ss_pred cc------hhhHHHHHHHHHhcCC--CCCEEEEEecCC
Q 023913 231 AI------GADLAVMERDALRMRD--GGPFIFAQVGWV 260 (275)
Q Consensus 231 ~~------~~~~~~~~~~i~~~~~--~~~ii~~S~~~~ 260 (275)
.. ..++..+...++.+.. +.+|+.+|..+.
T Consensus 170 ~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R 207 (338)
T 4a1f_A 170 GSKATKERHEQIAEISRELKTLARELEIPIIALVQLNR 207 (338)
T ss_dssp THHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 21 1233444444443322 688999887553
No 364
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=9.1e-06 Score=67.74 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=24.6
Q ss_pred ccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..+.++...++.+++|+|++||||||+.+.|++.+
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33444445679999999999999999999999876
No 365
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.79 E-value=2.9e-06 Score=74.11 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=31.7
Q ss_pred CCCCccccccccCC---CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 67 RRAPPILSRNFNER---AFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 67 ~~~~~~~~~~~~~~---geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
...++.+.++...+ |++++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44455555555666 99999999999999999999999653
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=1.2e-05 Score=65.64 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g 109 (275)
.+|.+++|+|++||||||+.+.|.+.+.+.|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 3589999999999999999999999876554
No 367
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.76 E-value=1.6e-05 Score=79.08 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=39.3
Q ss_pred cccccChhHH-HHHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913 173 LLLCESGGDN-LAANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA 231 (275)
Q Consensus 173 ~~~~eS~G~~-q~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~ 231 (275)
..+++|+|-. --....|+| +|..|+|+|+..|...+... ......+-+++|||+|+...
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 4456677732 123334444 49999999999998876532 12235677999999998644
No 368
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=5.2e-05 Score=69.22 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~ 118 (275)
.+|+++.|.|++|||||||+..++...... +++.++..+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 479999999999999999988888655444 7788877654
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.75 E-value=2.6e-05 Score=65.11 Aligned_cols=36 Identities=33% Similarity=0.583 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d 117 (275)
.++.+++|+|++|||||||.+.|.+.++ .+.++..|
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP---NCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST---TEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC---CcEEEeCC
Confidence 3488999999999999999999999764 34444433
No 370
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.70 E-value=0.00018 Score=67.78 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=35.3
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCC-CC-cEEEEeccCC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIF 119 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g-~i~i~~~d~~ 119 (275)
..+|+++.|.|++|+|||||+..++....+ .| .+.++..+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 567999999999999999999999987665 35 7888886653
No 371
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.69 E-value=2.4e-05 Score=64.47 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=31.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~ 119 (275)
-++++|+|++|||||||++.|++.+.+. .++.++..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999999987655 56766666543
No 372
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.68 E-value=1.3e-05 Score=69.83 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.-.++|+|..|+|||||++.|++.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999985
No 373
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.64 E-value=2.5e-05 Score=72.99 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~ 209 (275)
|+||+|+++||++|+ +|+++||| |++++|...
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~ 372 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN 372 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH
Confidence 999999999999997 58999999 888998654
No 374
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.59 E-value=3.6e-06 Score=76.16 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=23.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhcc
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+.++|.||||+|||||+++|++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 789999999999999999999987
No 375
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.58 E-value=7.4e-05 Score=63.99 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
.+|.+++|.|++||||||+++.|...+.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 36899999999999999999999998876
No 376
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.57 E-value=3.4e-05 Score=70.80 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHhc----------CceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA----------DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~----------~~~vlllD-~t~g~d~~~ 209 (275)
|+||+|++++|++|+ +|+|+||| |++++|...
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~ 309 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHR 309 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHH
Confidence 999999999999987 69999999 888998754
No 377
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.57 E-value=3.4e-05 Score=64.30 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=21.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhc
Q 023913 82 FTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.+++|+|++||||||+.++|+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999984
No 378
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.56 E-value=1.2e-05 Score=81.54 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=36.1
Q ss_pred cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCC
Q 023913 171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLA 229 (275)
Q Consensus 171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~ 229 (275)
....++++.|+.. .....+++ ++..|+++|++.+...+... ......+-++++||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 4455667777532 11222333 48999999999886544321 111245668999999986
No 379
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.55 E-value=3.8e-05 Score=74.13 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=32.3
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~ 115 (275)
+..+|+.++|+||||+|||||+++|++.+.+. +.+.+.+
T Consensus 104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 33479999999999999999999999998766 6665433
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.53 E-value=5.4e-05 Score=62.13 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=32.7
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~ 119 (275)
-.+++|+|++|||||||++.|+..+... .++.++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4689999999999999999999988766 57888876654
No 381
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=4.3e-05 Score=63.81 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
..+|.+++|+||+|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45688999999999999999999998764
No 382
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.51 E-value=4.5e-05 Score=63.32 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=20.4
Q ss_pred EEEEEcCCcchHHHHHHHHHh
Q 023913 83 TVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g 103 (275)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.48 E-value=5.6e-05 Score=60.44 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=21.3
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
..+.+|+|||||||||||.+|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
No 384
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.44 E-value=4.4e-05 Score=70.50 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=26.7
Q ss_pred cccCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 76 NFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
....+|++++|+||||||||||+++|++.+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345679999999999999999999999964
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.43 E-value=4.4e-05 Score=64.10 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.9
Q ss_pred ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C
Q 023913 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y 109 (275)
Q Consensus 77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g 109 (275)
...+|.+++|+|++||||||+.+.|.+.+.|. |
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 34569999999999999999999999988755 5
No 386
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.42 E-value=4.1e-05 Score=74.76 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccC
Q 023913 64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDI 118 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~ 118 (275)
.|+...++.........|+.++|+||||+|||||+++|++++++. +.+.+.++..
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 455555665666667789999999999999999999999998876 5566555544
No 387
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.35 E-value=0.00012 Score=58.55 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=30.7
Q ss_pred cccccc-ChhHHHHHHHH------HHhc-CceEEEEe-CCCCCCccc
Q 023913 172 DLLLCE-SGGDNLAANFS------RELA-DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 172 d~~~~e-S~G~~q~~~la------ral~-~~~vlllD-~t~g~d~~~ 209 (275)
++.+.+ |+||+||+++| |+++ +|+++|+| |++++|...
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~ 98 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 98 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH
Confidence 344455 99999999876 7777 79999999 899998754
No 388
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00079 Score=60.24 Aligned_cols=40 Identities=25% Similarity=0.186 Sum_probs=31.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d 117 (275)
..+|+++.|.|++|+|||||+..++...... ..+.++..+
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4679999999999999999998887543333 567777755
No 389
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.33 E-value=8.8e-05 Score=61.58 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 390
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.32 E-value=3.4e-05 Score=70.94 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++..++++|.+|+|||||+|.|++..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 45679999999999999999999964
No 391
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.30 E-value=4.3e-05 Score=69.24 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.9
Q ss_pred EEEEcCCcchHHHHHHHHHhcc
Q 023913 84 VGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 84 v~IiG~nGaGKTTLl~~L~g~l 105 (275)
+.|+|..|+|||||++.+.+-.
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~ 23 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNM 23 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999876643
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=0.0001 Score=60.01 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998654
No 393
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.29 E-value=0.00014 Score=69.45 Aligned_cols=54 Identities=30% Similarity=0.206 Sum_probs=36.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE 135 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q 135 (275)
.+| +.|+||||+|||||+++|++... .+.+.+.+.++.........+++..+++
T Consensus 64 p~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 64 PKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp CSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred Cce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 445 99999999999999999999864 3567777766654322223333444444
No 394
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00012 Score=58.48 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccC
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988653
No 395
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.20 E-value=0.00026 Score=65.47 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=38.4
Q ss_pred ccccccCCCCCCCCCCcc--------------ccccccCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 55 SHEPIYSPGYFSRRAPPI--------------LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.++.+.||. .+..+. +..+...+|+.++|+|++|+|||||++.|++.+.
T Consensus 137 e~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 137 ENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred ccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 566677877 555554 3445567899999999999999999999998764
No 396
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00021 Score=57.77 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.4
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
+.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 397
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.19 E-value=0.00041 Score=57.37 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCCcE
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSL 111 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i 111 (275)
++.+++|.|++||||||+.+.|...+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999977654544
No 398
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.18 E-value=0.00019 Score=60.27 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
..+.+|+|||||||||++.+|.-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 359999999999999999998754
No 399
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.17 E-value=0.00026 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.++.+++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999999986
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.15 E-value=0.00021 Score=60.95 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..++.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3458899999999999999999999854
No 401
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.14 E-value=0.0006 Score=69.51 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=39.4
Q ss_pred HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-Cce--EEEEe-CCCCCCccc
Q 023913 159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYI--IYIID-VSGGDKIPR 209 (275)
Q Consensus 159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~--vlllD-~t~g~d~~~ 209 (275)
.+.|..+++.+ ..++.+.+ |+||+||+.||++|+ +|. ++||| |++++|...
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~ 501 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD 501 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGG
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHH
Confidence 44566665543 35677777 999999999999998 554 99999 899998654
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.08 E-value=0.00036 Score=57.51 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+|.+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.08 E-value=0.00011 Score=61.15 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=25.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCC-CcEEE
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i 113 (275)
+++|.|++||||||+++.|...+... ..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 68999999999999999999987654 34433
No 404
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.08 E-value=0.00026 Score=65.61 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
..+..++|+|+||+|||||+|+|++.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45778999999999999999999987
No 405
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00027 Score=56.23 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=18.7
Q ss_pred cEEEEEcCCcchHHHHHHHH
Q 023913 82 FTVGIGGPVGTGKTALMLAL 101 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L 101 (275)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 406
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.08 E-value=0.0004 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.3
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCCC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDKY 109 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~g 109 (275)
+++|.|+.||||||+.+.|...+...|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 689999999999999999998775443
No 407
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.07 E-value=0.00027 Score=57.45 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.7
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
+.++.|.|++||||||+.+.|...+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999986543
No 408
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.06 E-value=0.00029 Score=57.48 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998755
No 409
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.05 E-value=0.00028 Score=57.97 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhccC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998654
No 410
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.03 E-value=0.013 Score=51.54 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=34.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~ 120 (275)
.++.+++|.|.-|+||||+.-.|+..+... .+|.++..|+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 457899999999999999999998877655 578888888753
No 411
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=6.2e-05 Score=67.82 Aligned_cols=49 Identities=29% Similarity=0.347 Sum_probs=34.3
Q ss_pred CccccccccCCCcE--EEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913 70 PPILSRNFNERAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (275)
Q Consensus 70 ~~~~~~~~~~~gei--v~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~ 118 (275)
++.........|++ +.|.||+|+||||+++++++.+.+. ++..+...+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 33333344455666 9999999999999999999987655 5544444443
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.98 E-value=0.00045 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.6
Q ss_pred CcEEEEEcCCcchHHHHHHHHHh
Q 023913 81 AFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g 103 (275)
+.+++|+|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999988
No 413
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00032 Score=60.65 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4478999999999999999999998764
No 414
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.96 E-value=0.0024 Score=57.49 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHH-hccCC--CCcEEEEecc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALC-KFLRD--KYSLAAVTND 117 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~-g~l~~--~g~i~i~~~d 117 (275)
.+| ++-|.||+|+|||||.-.++ ...+. .+++.++..+
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 457 89999999999999965554 44333 4566666544
No 415
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.00044 Score=56.54 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998754
No 416
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.94 E-value=0.00046 Score=55.49 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHh
Q 023913 82 FTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g 103 (275)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999997
No 417
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.92 E-value=0.00053 Score=56.38 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
+..+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999986
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.92 E-value=0.00035 Score=56.49 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999865
No 419
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.91 E-value=0.00045 Score=57.43 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEEcCCcchHHHHHHHHHhccC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.+.|+||+|||||||++.|+...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
No 420
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.91 E-value=0.00045 Score=57.30 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.++.+++|+|++||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998654
No 421
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.89 E-value=0.0016 Score=66.56 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=39.4
Q ss_pred HHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C--ceEEEEe-CCCCCCccc
Q 023913 161 PLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 161 ~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~--~~vlllD-~t~g~d~~~ 209 (275)
.|..+++.+ .+++.+.+ |+||+||+.||++|. + |.++||| ||+++|...
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~ 541 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD 541 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGG
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHH
Confidence 456666554 36777777 999999999999998 5 5899999 899998654
No 422
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.89 E-value=0.00045 Score=59.90 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccC
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.+++|+||+|||||||-+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998653
No 423
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.87 E-value=0.00044 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.++.|+|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 424
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.87 E-value=0.00066 Score=60.38 Aligned_cols=77 Identities=21% Similarity=0.092 Sum_probs=48.4
Q ss_pred CceEEEEeCCCCCC---cccccccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913 193 DYIIYIIDVSGGDK---IPRKGGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 193 ~~~vlllD~t~g~d---~~~~~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l 266 (275)
+..|+++|.+...- ...+.... ...+-+||+||+||.+. ...+++.+.+.......+++++||++++|++++
T Consensus 86 d~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~--~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 86 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp CEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc--hhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHH
Confidence 67888899764321 11111111 13455889999999865 232334444443322278999999999999999
Q ss_pred hcccc
Q 023913 267 LSITH 271 (275)
Q Consensus 267 ~~~~~ 271 (275)
+.+..
T Consensus 164 f~~l~ 168 (301)
T 1u0l_A 164 KEYLK 168 (301)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 97653
No 425
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.87 E-value=0.00052 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.7
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998765
No 426
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.86 E-value=0.00053 Score=56.92 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
.++.+++|+|+.||||||+.+.|...+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998654
No 427
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.86 E-value=0.0067 Score=56.72 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~ 118 (275)
..+|+++.|.|++|+|||||...++..... . ..+.++..+.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 457999999999999999999888875543 3 4677777653
No 428
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.86 E-value=0.001 Score=56.33 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEeccCC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIF 119 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~d~~ 119 (275)
+|.++.|.|+.||||||+++.|...+...| .+. ...++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~-~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ-LTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE-EEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc-cccCCC
Confidence 588999999999999999999999887664 443 334444
No 429
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.86 E-value=0.0017 Score=65.66 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913 161 PLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR 209 (275)
Q Consensus 161 ~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~ 209 (275)
.|..+++.+. .++.+.+ |+||+||+.||++|+ +| .++||| ||+++|...
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 4555555432 5666777 999999999999999 66 699999 899997643
No 430
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.84 E-value=0.00069 Score=62.21 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~ 115 (275)
.+.-++|+|++|||||||++.|+..+.+. +++.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46678999999999999999999877666 6776664
No 431
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.84 E-value=0.0017 Score=66.56 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C--ceEEEEe-CCCCCCccc
Q 023913 160 GPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 160 ~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~--~~vlllD-~t~g~d~~~ 209 (275)
+.|..+++.+ .+++.+.+ |+||+||+.||++|. + +.++||| ||+++|...
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~ 558 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRD 558 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHH
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHH
Confidence 3456666554 36777777 999999999999998 5 5899999 899988643
No 432
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.84 E-value=0.00069 Score=60.35 Aligned_cols=77 Identities=14% Similarity=-0.026 Sum_probs=48.9
Q ss_pred CceEEEEeCCCCC-Ccc--cccccc---ccccCEEEEecCCCCccchhh-HHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913 193 DYIIYIIDVSGGD-KIP--RKGGPG---ITQADLLVINKTDLASAIGAD-LAVMERDALRMRDGGPFIFAQVGWVIGIIF 265 (275)
Q Consensus 193 ~~~vlllD~t~g~-d~~--~~~~~~---i~~adiivlNK~Dl~~~~~~~-~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~ 265 (275)
+..++++|.+... ... .++... ...+-+||+||+|+.+..... .+.+.+..+++ +.+++++|+++++|+++
T Consensus 81 D~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~--g~~~~~~SA~~g~gi~~ 158 (302)
T 2yv5_A 81 DRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA--GYDVLKVSAKTGEGIDE 158 (302)
T ss_dssp CEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT--TCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC--CCeEEEEECCCCCCHHH
Confidence 6678888976432 111 111111 234568999999998752101 34444444444 46899999999999999
Q ss_pred Hhcccc
Q 023913 266 TLSITH 271 (275)
Q Consensus 266 l~~~~~ 271 (275)
++++..
T Consensus 159 L~~~l~ 164 (302)
T 2yv5_A 159 LVDYLE 164 (302)
T ss_dssp HHHHTT
T ss_pred HHhhcc
Confidence 998654
No 433
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.00051 Score=55.80 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
++.|.|++||||||+.+.|...+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999876543
No 434
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.81 E-value=0.00067 Score=55.15 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 435
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.80 E-value=0.00088 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhccC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
+++|+|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998664
No 436
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.79 E-value=0.0007 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998865
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.77 E-value=0.00053 Score=55.46 Aligned_cols=27 Identities=37% Similarity=0.468 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
++.++.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987543
No 438
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.75 E-value=0.00072 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.+.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998865
No 439
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00042 Score=66.25 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~ 209 (275)
|+||+||++||++++ +| +++|+| |++|+|...
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~ 434 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA 434 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH
Confidence 999999999999998 88 999999 999998653
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.74 E-value=0.00067 Score=58.40 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.5
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
No 441
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.72 E-value=0.0011 Score=60.84 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=21.3
Q ss_pred CcEEEEEcCCcchHHHHHHHHHh
Q 023913 81 AFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g 103 (275)
+..++|+|.+|+|||||+|.|++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35789999999999999999998
No 442
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.72 E-value=0.00075 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999865
No 443
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.69 E-value=0.00076 Score=68.04 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~ 118 (275)
.+++.+.|+||+|+|||||+++|++.+... -+.+.+.++
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~-~i~v~~~~l 274 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF-FFLINGPEI 274 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCE-EEEEEHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCc-EEEEEchHh
Confidence 558899999999999999999999986532 244554444
No 444
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.68 E-value=0.0008 Score=59.50 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.++.|+||+||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999998764
No 445
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.68 E-value=0.0013 Score=55.75 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCC--cEEEEeccCCCC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDIFTK 121 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g--~i~i~~~d~~~~ 121 (275)
+|.++.|.|+.||||||+++.|...+...| .+ +...+++..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~~t 44 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPGGT 44 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCCCC
Confidence 478999999999999999999999887654 34 444455443
No 446
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.67 E-value=0.0012 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+..+++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998754
No 447
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.65 E-value=0.00099 Score=56.26 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999754
No 448
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.64 E-value=0.0043 Score=56.61 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=32.1
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~ 118 (275)
..+|.++.|.|++|+|||||...++...... +++.++..+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3479999999999999999998888755434 6777776543
No 449
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.64 E-value=0.0011 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.5
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+-+++|+|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998764
No 450
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.63 E-value=0.00093 Score=55.74 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 451
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.63 E-value=0.0016 Score=58.38 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=31.6
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhcc-CC------CCcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKFL-RD------KYSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l-~~------~g~i~i~~~d~ 118 (275)
..+|.++.|.|++|+|||||...++... .+ .+++.++..+.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3569999999999999999999888743 34 45666666553
No 452
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.62 E-value=0.00077 Score=61.59 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=24.9
Q ss_pred ccCCCcE--EEEEcCCcchHHHHHHHHHhccC
Q 023913 77 FNERAFT--VGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 77 ~~~~gei--v~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
...+|++ ++|+|++||||||+.++|++.+.
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445666 99999999999999999998654
No 453
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.62 E-value=0.0011 Score=55.38 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 454
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.59 E-value=0.00083 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhcc
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 455
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.59 E-value=0.001 Score=54.02 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.3
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.56 E-value=0.001 Score=60.76 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=26.2
Q ss_pred ChhHHHHHH------HHHHhc-C-ceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAAN------FSRELA-D-YIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~------laral~-~-~~vlllD-~t~g~d~~~ 209 (275)
|+||+|++. +|++++ + |+++|+| |++++|...
T Consensus 282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 999999885 456666 7 9999999 888988643
No 457
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.56 E-value=0.00098 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998653
No 458
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.56 E-value=0.00097 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhcc
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 459
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.55 E-value=0.0012 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998854
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.55 E-value=0.0012 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.9
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
-.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 461
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.52 E-value=0.002 Score=53.12 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i 113 (275)
..+.|.||+|+|||||++.++..+... ..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 689999999999999999999876554 44443
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.0016 Score=54.41 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEE
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~ 114 (275)
.+..+.|.||+|+|||||++.++..+... ..+.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 57889999999999999999999876543 344443
No 463
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.49 E-value=0.0021 Score=56.49 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=29.2
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN 116 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~ 116 (275)
...+.|.||+|+|||||.+.|++.+... +.+.....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 3579999999999999999999988766 55554443
No 464
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.48 E-value=0.0043 Score=55.87 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhccCCC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~~~ 108 (275)
.+.|.||+|+|||||++.+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999987664
No 465
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.47 E-value=0.0014 Score=53.73 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913 178 SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR 209 (275)
Q Consensus 178 S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~ 209 (275)
|+||+|+++||++|+ .|+++||| |++++|...
T Consensus 66 SgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~ 103 (173)
T 3kta_B 66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN 103 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH
Confidence 999999999999996 35899999 889998643
No 466
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.0014 Score=56.33 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhccC
Q 023913 83 TVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
-+.|.||+|+|||||+++|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999999764
No 467
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.47 E-value=0.002 Score=55.42 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEeccCCC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT 120 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~d~~~ 120 (275)
+|.++.|.|++||||||+++.|...+...| .+.+...++..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 488999999999999999999999877553 32333344443
No 468
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.46 E-value=0.0016 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
++.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998654
No 469
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.43 E-value=0.0014 Score=56.18 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
.+|.++.|.|+.||||||+++.|...+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999987753
No 470
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.43 E-value=0.0017 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.+..++.|+||+||||+|.-+.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999865
No 471
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.40 E-value=0.0018 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.4
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
-.+++|+|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 472
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.39 E-value=0.0083 Score=52.24 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=48.6
Q ss_pred CceEEEEeCCCCCCccc-cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913 193 DYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 271 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~ 271 (275)
+..+.|+|+........ ... .+..+-++|+||+||++. ...+...+.+++. +.++ ++|++++.|++++++.+.
T Consensus 23 D~vl~VvDar~P~~~~~~~l~-ll~k~~iivlNK~DL~~~--~~~~~~~~~~~~~--g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 23 NTVVEVRDARAPFATSAYGVD-FSRKETIILLNKVDIADE--KTTKKWVEFFKKQ--GKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp SEEEEEEETTSTTTTSCTTSC-CTTSEEEEEEECGGGSCH--HHHHHHHHHHHHT--TCCE-EECCTTSCHHHHHHHHCC
T ss_pred CEEEEEeeCCCCCcCcChHHH-hcCCCcEEEEECccCCCH--HHHHHHHHHHHHc--CCeE-EEECCCCcCHHHHHHHHH
Confidence 78888999654322211 111 125667899999999976 4444444455442 4567 999999999999987654
No 473
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.37 E-value=0.0021 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++.+++|+|++||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
No 474
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.37 E-value=0.0026 Score=60.79 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHh--ccCCC-CcEEEEeccCCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIFT 120 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g--~l~~~-g~i~i~~~d~~~ 120 (275)
.+++-+.|.|.+||||||+|+.|+. ++..+ +.+.+...|+..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4588999999999999999999886 44555 788888878764
No 475
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.37 E-value=0.0016 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.6
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+-+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998865
No 476
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.36 E-value=0.0017 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 477
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0019 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=22.5
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
-.+++|+|+.||||||+.+.|...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999988543
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.35 E-value=0.00088 Score=59.37 Aligned_cols=38 Identities=13% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d 117 (275)
+..+++|.|+.||||||+.+.|...+... .++.++..|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 46789999999999999999998855422 224444433
No 479
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.33 E-value=0.0018 Score=59.49 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=30.8
Q ss_pred cccCEEEEecCCC--Ccc-chhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913 216 TQADLLVINKTDL--ASA-IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 266 (275)
Q Consensus 216 ~~adiivlNK~Dl--~~~-~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l 266 (275)
..+-+++.||+|. .+. ....++.+++..++. +++++++||+..+++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHh
Confidence 3567888999873 321 014456666655544 478999999875555443
No 480
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.30 E-value=0.0023 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++..+.|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999865
No 481
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.29 E-value=0.0063 Score=53.60 Aligned_cols=73 Identities=14% Similarity=0.025 Sum_probs=47.3
Q ss_pred CceEEEEeCCCCCCccc-cccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913 193 DYIIYIIDVSGGDKIPR-KGGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 269 (275)
Q Consensus 193 ~~~vlllD~t~g~d~~~-~~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~ 269 (275)
+..+.|+|+........ .....+ ..+-++|+||+||++. ...+...+.+++ .+.+++++|++++.|++++++.
T Consensus 25 DvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~--~~~~~~~~~~~~--~g~~~i~iSA~~~~gi~~L~~~ 99 (282)
T 1puj_A 25 DIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADA--AVTQQWKEHFEN--QGIRSLSINSVNGQGLNQIVPA 99 (282)
T ss_dssp SEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCH--HHHHHHHHHHHT--TTCCEEECCTTTCTTGGGHHHH
T ss_pred CEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCH--HHHHHHHHHHHh--cCCcEEEEECCCcccHHHHHHH
Confidence 77888999754432211 111111 4566899999999875 444444444433 2458999999999999888763
No 482
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.29 E-value=0.0042 Score=56.17 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=31.7
Q ss_pred cCCCcEEEEEcCCcchHHHHHHHHHhc--cCC-----CCcEEEEeccC
Q 023913 78 NERAFTVGIGGPVGTGKTALMLALCKF--LRD-----KYSLAAVTNDI 118 (275)
Q Consensus 78 ~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~-----~g~i~i~~~d~ 118 (275)
..+|+++.|.|++|+|||||+..++.. +++ .+++.++..+.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 457999999999999999999998874 322 35676666553
No 483
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.27 E-value=0.0019 Score=54.02 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=20.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998854
No 484
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.26 E-value=0.012 Score=53.78 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC-CCcEEEEeccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDI 118 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g~i~i~~~d~ 118 (275)
.+|.++.|.|++|+|||||...++..... .+.+.++..+.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 56999999999999999999877765433 36788877664
No 485
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.25 E-value=0.0019 Score=64.85 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
..++.++|+||+||||||++..++....
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999988876543
No 486
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.25 E-value=0.0027 Score=56.12 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
..+..+.|.||+|+|||||.+++++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4577899999999999999999999753
No 487
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.24 E-value=0.042 Score=44.80 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=67.3
Q ss_pred EEEEE-cCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913 83 TVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (275)
Q Consensus 83 iv~Ii-G~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
+++|. +.-|+||||+.-.|+..+... .++.++..|+.. ....+... -+.. ........ ....+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~-~~~~~~~~---~~~~---------~~~~~~~~--~~l~~ 67 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM-SLTNWSKA---GKAA---------FDVFTAAS--EKDVY 67 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHTT---SCCS---------SEEEECCS--HHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC-CHHHHHhc---CCCC---------CcEEecCc--HHHHH
Confidence 56666 678899999999998877655 578888877542 11111110 0000 00000000 11223
Q ss_pred HHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEeCCCCCCcccccccccc--------ccCEEEEecCCCCcc
Q 023913 161 PLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGIT--------QADLLVINKTDLASA 231 (275)
Q Consensus 161 ~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~--------~adiivlNK~Dl~~~ 231 (275)
.++.+ ...+|+++++ +++.......+...++..|+++.|.............++ ..-.+|+|+++....
T Consensus 68 ~l~~l--~~~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~ 145 (206)
T 4dzz_A 68 GIRKD--LADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT 145 (206)
T ss_dssp THHHH--TTTSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE
T ss_pred HHHHh--cCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch
Confidence 44444 2358999999 444422222222334778888876544311111111111 111789999985443
No 488
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.23 E-value=0.0025 Score=52.47 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccC-CCCcEEEEe
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVT 115 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~-~~g~i~i~~ 115 (275)
+|.++.|.|+.||||||++..++..+. ...++.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999999855544332 234565554
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.21 E-value=0.0053 Score=51.52 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=31.6
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHH
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEF 126 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~ 126 (275)
|.+++|=|.-||||||+++.|...+.....+. ...+++....++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~-~~~eP~~t~~g~~ 46 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI-MTREPGGVPTGEE 46 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE-EEESSTTCHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE-EeeCCCCChHHHH
Confidence 56889999999999999999999876434443 3344544333333
No 490
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.16 E-value=0.0028 Score=54.06 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC-CC-cEEEEeccCCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFT 120 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g-~i~i~~~d~~~ 120 (275)
.+|.++.|.|+.||||||+.+.|...+.. .| ++.+...+++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 35889999999999999999999998776 43 44442445543
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.15 E-value=0.0026 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcchHHHHHHHHHh
Q 023913 81 AFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g 103 (275)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
No 492
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0026 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhcc
Q 023913 83 TVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 83 iv~IiG~nGaGKTTLl~~L~g~l 105 (275)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 493
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.10 E-value=0.054 Score=46.40 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCcEEEEE-cCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913 80 RAFTVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (275)
Q Consensus 80 ~geiv~Ii-G~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~ 120 (275)
++.+++|. +.-|+||||+.-.|+..+. . .++.++..|+..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 46777774 6778999999999998888 6 689999888753
No 494
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0025 Score=58.67 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhcc
Q 023913 82 FTVGIGGPVGTGKTALMLALCKFL 105 (275)
Q Consensus 82 eiv~IiG~nGaGKTTLl~~L~g~l 105 (275)
..|+|+|++++|||||||.|++.-
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999863
No 495
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.0042 Score=49.53 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 80 ~geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
....+.|.|++|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998653
No 496
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0029 Score=56.72 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
..+..+.|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999997654
No 497
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.04 E-value=0.0086 Score=50.74 Aligned_cols=29 Identities=34% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~ 107 (275)
.+|.++.|.|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999998765
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0036 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.5
Q ss_pred CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (275)
Q Consensus 81 geiv~IiG~nGaGKTTLl~~L~g~l~ 106 (275)
+.+++|.|..||||||+.+.|...+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998764
No 499
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.0039 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHh
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g 103 (275)
.+|+.++|.|++||||||++..++-
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4589999999999999998877654
No 500
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.00 E-value=0.0035 Score=59.86 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (275)
Q Consensus 79 ~~geiv~IiG~nGaGKTTLl~~L~g~ 104 (275)
.+| +.+|+|+|||||||||.+|..+
T Consensus 59 ~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 59 GGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred CCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 446 9999999999999999999665
Done!