BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023914
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 95/155 (61%)
Query: 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPS 164
FC CGG+ +P G+ R IC C I YQNPK++VGC+ E + K+LLCKR I P
Sbjct: 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPY 63
Query: 165 YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKR 224
G WTLPAG+ E E+ +GA RET EEA A VE++ +A +P I Q+Y +F AKL
Sbjct: 64 RGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYXLFRAKLLD 123
Query: 225 PHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259
F PG ES E RLF EIP++ +AF I L+
Sbjct: 124 LDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLK 158
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
C + YQ PK+ I + KILL ++ + GLW+LP G+ ++ +S + ++E E
Sbjct: 61 CNETGYQTPKLDTRAAIFQEDKILL----VQENDGLWSLPGGWCDVDQSVKDNVVKEVKE 116
Query: 192 EARADVEVQSPFAQLD---------IPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALD 242
EA DVE Q A LD R+ +++I L +L F P E+ F+LD
Sbjct: 117 EAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFI--LCRLLGGEFQPNSETVASGFFSLD 174
Query: 243 EIP 245
++P
Sbjct: 175 DLP 177
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
+ YQ PK+ + ++ ++K+L K K S G W LP G+ ++G + E A +E +E
Sbjct: 59 ASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTEVAAKEVFE 115
Query: 192 EARADVEVQSPFAQLDI------PRIGQIYIIFLA-KLKRPHFSPGPESSECRLFALDEI 244
E +V+ A D P +Y IF+ ++ E+ E F +E+
Sbjct: 116 ETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENEL 175
Query: 245 PFDSLA 250
P S+A
Sbjct: 176 PNLSIA 181
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
+ YQ PK+ + ++ ++K+L K K S G W LP G+ ++G + E A +E +E
Sbjct: 59 ASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTEVAAKEVFE 115
Query: 192 EARADVEVQSPFAQLDI------PRIGQIYIIFLA-KLKRPHFSPGPESSECRLFALDEI 244
E +V+ A D P +Y IF+ ++ E+ E F +E+
Sbjct: 116 ETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENEL 175
Query: 245 PFDSLA 250
P S+A
Sbjct: 176 PNLSIA 181
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 137 YQNPKMVVGCLI-----EHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETW 190
Y+ P + V ++ E D+ K+LL +RK P W LP G++ ES + +RET
Sbjct: 35 YEKPSLTVDXVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETK 94
Query: 191 EE-----ARADVEVQSPFAQLD-IPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEI 244
EE ++ ++E F++ D PR + + +LA + G ++ E F L+
Sbjct: 95 EETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERH 154
Query: 245 -PFDSLAFSSISVTLQL 260
+L+ + +TL L
Sbjct: 155 GQHITLSHEDVEITLDL 171
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
+ V L+ + IL+ +RK P LW LP G++E E+ A+ IRE +EE ++
Sbjct: 209 VTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINL 264
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
P + V C++ + K L+ + I LW PAG++E E+ E A RE WEE +
Sbjct: 3 KPHVTVACVVHAEGKFLVVEETIN-GKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
Query: 199 VQ 200
Q
Sbjct: 62 PQ 63
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 143 VVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
V C++ +HD+ +LL K P G W P G ME GES E RE WEE + V++
Sbjct: 6 VTNCIVVDHDQVLLLQK----PRRGWWVAPGGKMEAGESILETVKREYWEE--TGITVKN 59
Query: 202 P 202
P
Sbjct: 60 P 60
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
G + +++LL + ++ G W P G+ E GES E A+RE WEE EV P
Sbjct: 7 GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA 204
G ++ D ++LL K PS +W+ P G +E GE E A+RE WEE E+
Sbjct: 8 GGVLFKDGEVLLIKT---PS-NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIG 63
Query: 205 Q------LDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDE 243
+ L RI + +L K K P E + + F + E
Sbjct: 64 EIHYWYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKE 108
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
V +I++++ LL + P W+LPAG +E GE+ E IRE WEE V+V+
Sbjct: 24 VAAVIKNEQGELLFQY---PGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQVK 77
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
G + +++LL + ++ G W P G+ E GES E A+RE WE+ EV P
Sbjct: 7 GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLPL 61
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 142 MVVGC-LIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
+VV C L++ D ++LL +R S GLW P G +E GE+ IRE EE V+
Sbjct: 30 IVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQA 89
Query: 200 QSPF 203
+ F
Sbjct: 90 DNLF 93
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 154 ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
+L+ +R+ +P GL LP G+++ E+ EG +RE EE R V
Sbjct: 216 VLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKV 259
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 138 QNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
+ P++ G I D +ILL KRK P G W LP G ++ E RE EE
Sbjct: 26 EQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEE 80
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 137 YQNPKMVVGCLIEHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARA 195
Y+ P ++ + D K++L+ +R+ +P + W G +E GE+A + A+RE EE
Sbjct: 6 YKRPVSILVVIYAQDTKRVLMLQRRDDPDF--WQSVTGSVEEGETAPQAAMREVKEEVTI 63
Query: 196 DV 197
DV
Sbjct: 64 DV 65
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
Complexed With A Magnesium Ion
Length = 194
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 20/106 (18%)
Query: 106 FCQWCGGQTKH--EVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIE- 162
+ W G+T+ E+PH Y+ ++V E D ++LL R E
Sbjct: 16 WALWLSGRTRTALELPH----------------YRRAAVLVALTREADPRVLLTVRSSEL 59
Query: 163 PSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD 207
P++ G P G ++ GE+ + A+RE EE D + +LD
Sbjct: 60 PTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELD 105
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 142 MVVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
+ LI+ D ++LL +R S GLW P G +E GE+ +RE EE D
Sbjct: 10 VTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 139 NPKMVVG--CLI----EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIR 187
NP +G C+I E + +LL KR EP+ G W+L G+++ ES + A R
Sbjct: 9 NPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAXGEWSLXGGFVQKDESVDDAAKR 63
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEE 192
VV +IE D KILL +R + GLW G +E ES + +RE EE
Sbjct: 11 VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREE 61
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 135 IAYQNPKMV-VGCLIEHDKKILLCKRKIEPSY---GLWTLPAGYMEIGESAAEGAIRETW 190
++ + P ++ V LI ++K L R+ E S G W LP G + ES EG RE W
Sbjct: 1 MSLEKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVW 60
Query: 191 EEA 193
EE
Sbjct: 61 EET 63
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 146 CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205
L+ +++LL +K G W G ++ GE+ +GA RE EE+ V+ Q
Sbjct: 30 VLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ 89
Query: 206 LDIPRIGQIYIIFLAKLKRPHFSPGP-ESSECR--LFALDEIPFDSL 249
+ +G+ ++ + P ES E R F LD+IPF +
Sbjct: 90 IVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDM 136
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
+V+ + ++LL + G W LPAG ME GE+ E RE EEA E
Sbjct: 22 VVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCE--- 78
Query: 202 PFAQLDIPRIGQIYI--IFLAK 221
P L + G ++ +FLA+
Sbjct: 79 PETLLSVEERGPSWVRFVFLAR 100
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 146 CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205
L+ +++LL +K G W G ++ GE+ +GA RE EE+ V+ Q
Sbjct: 10 VLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQ 69
Query: 206 LDIPRIGQIYIIFLAKLKRPHFSPGP-ESSECR--LFALDEIPFDSL 249
+ +G+ ++ + P ES E R F LD+IPF +
Sbjct: 70 IVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDM 116
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 146 CLIEHDKKILLCKRKIEPSY----GLWTLPAGYMEIGESAAEGAIRETWEE 192
L+ ILL + K P + GLW +P+G +E GE+ + A+RE EE
Sbjct: 19 VLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEE 69
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165
+C +CG HE + + +C+ C + Y + I D ILL + +
Sbjct: 109 YCGYCG----HEXYPSKTEWAXLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRN- 163
Query: 166 GLWTLPAGYMEIGESAAEGAIRETWEEA 193
G+ T+ AG++E+GE+ + RE EE+
Sbjct: 164 GVHTVLAGFVEVGETLEQAVAREVXEES 191
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165
+C +CG HE + + +C+ C + Y + I D ILL + +
Sbjct: 109 YCGYCG----HEXYPSKTEWAXLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRN- 163
Query: 166 GLWTLPAGYMEIGESAAEGAIRETWEEA 193
G+ T+ AG++E+GE+ + RE EE+
Sbjct: 164 GVHTVLAGFVEVGETLEQAVAREVXEES 191
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 146 CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE---ARADVEVQSP 202
CL+ +DKKI R P W +P G ++ GE AIRE EE A+V + P
Sbjct: 20 CLMNNDKKIFAASRLDIPD--AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVP 77
Query: 203 F 203
+
Sbjct: 78 Y 78
>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
Length = 171
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
V G LIE D+K+LL K+K+ W+LP G +E GE+ E IRE EE +V+++
Sbjct: 26 VTGILIE-DEKVLLVKQKVANRD--WSLPGGRVENGETLEEAXIREXREETGLEVKIKKL 82
Query: 203 FAQLDIPRIGQ--IYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDSLAFSSISVTL 258
D P ++I FL + + P E + + +P + L++ S T
Sbjct: 83 LYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQXVPINELSYYGFSETF 141
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
VV + D KIL+ +R S G W P G +E GE+ E RE EE + EV
Sbjct: 24 VVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEV 81
>pdb|2YYH|A Chain A, Crystal Structure Of Nudix Family Protein From Aquifex
Aeolicus
pdb|2YYH|B Chain B, Crystal Structure Of Nudix Family Protein From Aquifex
Aeolicus
pdb|2YYH|C Chain C, Crystal Structure Of Nudix Family Protein From Aquifex
Aeolicus
pdb|2YYH|D Chain D, Crystal Structure Of Nudix Family Protein From Aquifex
Aeolicus
Length = 139
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 149 EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI 208
E+ K I+L +RK P GL LP G++E+GE E A RE EE +V +
Sbjct: 22 ENFKGIVLIERKY-PPVGL-ALPGGFVEVGERVEEAAAREXREETGLEVRLHKLXGVYSD 79
Query: 209 P-RIGQIYIIFLAKLKRPHFSP--GPESSECRLFALDEIPFDSLAFSSISVTLQLVR 262
P R + +++ + + P G ++ + +++ L+EIP D L F + L ++
Sbjct: 80 PERDPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPLDKLVFDHKKIILDFLK 136
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
P + V +IE D K LL + + PAG++E GES + RE EE
Sbjct: 6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEE 59
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 154 ILLCKRKI-----EPSY--GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206
ILL KR + +P+ G W +P G+++ ESA + A RE EE PF
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF 107
Query: 207 DIPR-------IGQIYIIFLAKLKRPHFSPGPESSECRLFALDE-----IPFDSL----- 249
D P I + + + + G +++E LF + E + FD L
Sbjct: 108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKK 167
Query: 250 AFSSIS 255
AFS+I+
Sbjct: 168 AFSAIT 173
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 168 WTLPAGYMEIGESAAEGAIRETWEEA 193
WT P G++E GE E A+RET EEA
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEA 63
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 150 HDK--KILLCKRKIEPSYGLWTLPAGYME--IGESAAEGAIRETWEE 192
HD+ K+LL +R P GLW LP G+++ ES + +R+ E+
Sbjct: 33 HDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEK 79
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 150 HDK--KILLCKRKIEPSYGLWTLPAGYME 176
HD+ K+LL +R P GLW LP G+++
Sbjct: 33 HDQQLKVLLVQRSNHPFLGLWGLPGGFID 61
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEAR 194
+ LL + P + WT P G+++ GE + AIRET EEA
Sbjct: 19 EFLLLQASYPPHH--WTPPKGHVDPGEDEWQAAIRETKEEAN 58
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 146 CLIEHDKKILLCKRKIEPSYGLWT---LPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
CLIE + + + P W+ P G++E E+ AE IRE +EE ++
Sbjct: 13 CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL 72
Query: 203 FAQLDIP-RIGQIYIIFLAKLKRPHFSPGPESS---ECRLFALDEIPFDSLAFSSI 254
+ P G YI+ K FS +SS E D+IP +LA+ +
Sbjct: 73 VGIKNWPLDTGGRYIVICYKAT--EFSGTLQSSEEGEVSWVQKDQIPNLNLAYDML 126
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 163 PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP 209
P Y W+ P G +E E+ A+RE EE + V++ +++ P
Sbjct: 46 PKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYP 92
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
V G + + + +L + +W P G E E + A+RE +EE E +S
Sbjct: 29 VAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRS 87
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 168 WTLPAGYMEIGESAAEGAIRETWEEA 193
WT P G++E GE E A+R T EEA
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEA 68
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 169 TLPAGYMEIGESAAEGAIRETWEE 192
+ P G++E+GE A AIRE +EE
Sbjct: 40 SFPGGHVEVGEPCATAAIREVFEE 63
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 168 WTLPAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDIPRIGQ---IYII 217
W P G ++ ES + AIRE +EE D + +P +D+ GQ +YII
Sbjct: 123 WGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYII 176
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 168 WTLPAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDIPRIGQ---IYII 217
W P G ++ ES + AIRE +EE D + +P +D+ GQ +YII
Sbjct: 128 WGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYII 181
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 155 LLCKRKIEPSYGLWTL--PAGYMEIGESAAEGAIRETWEE 192
+L R++ P+ GL L PAG +E GE E A RE EE
Sbjct: 47 MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEE 86
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 149 EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
E + ++LL P W +P G ME E A+RE +EEA
Sbjct: 21 EQEDEVLLVSSSRYPDQ--WIVPGGGMEPEEEPGGAAVREVYEEA 63
>pdb|3PYO|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|U Chain U, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|U Chain U, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 100
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 111 GGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLC 157
GG + E P K+R IC CGK P V +E+ KKI +C
Sbjct: 57 GGFIEKEAPLHASKVRPICPACGK-----PTRVRKKFLENGKKIRVC 98
>pdb|3FIN|Y Chain Y, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 101
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 111 GGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLC 157
GG + E P K+R IC CGK P V +E+ KKI +C
Sbjct: 57 GGFIEKEAPLHASKVRPICPACGK-----PTRVRKKFLENGKKIRVC 98
>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 102
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 111 GGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLC 157
GG + E P K+R IC CGK P V +E+ KKI +C
Sbjct: 57 GGFIEKEAPLHASKVRPICPACGK-----PTRVRKKFLENGKKIRVC 98
>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s)
Length = 109
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 111 GGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLC 157
GG + E P K+R IC CGK P V +E+ KKI +C
Sbjct: 57 GGFIEKEAPLHASKVRPICPACGK-----PTRVRKKFLENGKKIRVC 98
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 149 EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
E + ++LL P W +P G ME E A+RE +EEA
Sbjct: 13 EREDEVLLVSSSRYPDR--WIVPGGGMEPEEEPGGAAVREVYEEA 55
>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|X Chain X, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|S Chain S, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|S Chain S, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|Y Chain Y, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|Y Chain Y, Ef-Tu Complex 3
pdb|2Y19|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|Y Chain Y, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 110
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 111 GGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLC 157
GG + E P K+R IC CGK P V +E+ KKI +C
Sbjct: 58 GGFIEKEAPLHASKVRPICPACGK-----PTRVRKKFLENGKKIRVC 99
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 154 ILLCKRKIEPSYGL------WTLPAGYMEIGESAAEGAIRETWEE---ARADVEV 199
I++C R+ + + W P G + GESA + RE +EE +R DV +
Sbjct: 13 IVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI 67
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 155 LLCKRKIEPSYGLWTL--PAGYMEIGESAAEGAIRETWEE 192
+L R++ P+ GL L PAG +E GE E A RE E+
Sbjct: 47 MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQ 86
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 155 LLCKRKIEPSYGLWTL--PAGYMEIGESAAEGAIRETWEE 192
+L R++ P+ GL L PAG +E GE E A R+ EE
Sbjct: 47 MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRQLAEE 86
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 149 EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
E ++++LL P W +P G ME E + A+RE EEA
Sbjct: 51 ESEEEVLLVSSSRHPD--RWIVPGGGMEPEEEPSVAAVREVCEEA 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,747,340
Number of Sequences: 62578
Number of extensions: 237078
Number of successful extensions: 669
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 57
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)