Query 023914
Match_columns 275
No_of_seqs 361 out of 2185
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk6_A NADH pyrophosphatase; 1 100.0 5.6E-39 1.9E-43 291.5 18.9 192 70-269 73-265 (269)
2 3cng_A Nudix hydrolase; struct 100.0 2.7E-32 9.2E-37 233.6 18.5 164 103-269 2-165 (189)
3 2qjt_B Nicotinamide-nucleotide 99.9 1.4E-25 4.9E-30 208.0 5.7 184 71-266 140-346 (352)
4 3i7u_A AP4A hydrolase; nudix p 99.9 1.1E-22 3.6E-27 165.2 8.1 119 141-267 4-128 (134)
5 2yyh_A MUTT domain, 8-OXO-DGTP 99.9 6E-21 2E-25 153.8 16.6 126 133-266 2-136 (139)
6 3q1p_A Phosphohydrolase (MUTT/ 99.9 9.5E-21 3.3E-25 164.1 16.5 118 132-252 59-183 (205)
7 2qjo_A Bifunctional NMN adenyl 99.9 1.1E-22 3.9E-27 187.2 4.7 149 90-247 161-322 (341)
8 3shd_A Phosphatase NUDJ; nudix 99.9 1.1E-20 3.6E-25 154.5 14.4 126 139-268 3-134 (153)
9 3gg6_A Nudix motif 18, nucleos 99.8 2.2E-20 7.5E-25 153.3 14.7 125 142-268 21-150 (156)
10 4dyw_A MUTT/nudix family prote 99.8 3E-20 1E-24 153.6 14.7 126 132-259 20-151 (157)
11 3o8s_A Nudix hydrolase, ADP-ri 99.8 3.9E-20 1.3E-24 160.3 15.7 123 132-259 61-190 (206)
12 3grn_A MUTT related protein; s 99.8 2.7E-20 9.1E-25 152.6 13.5 124 141-267 8-136 (153)
13 3gwy_A Putative CTP pyrophosph 99.8 3.9E-20 1.3E-24 149.4 14.1 124 139-267 4-132 (140)
14 3id9_A MUTT/nudix family prote 99.8 4.2E-20 1.4E-24 154.0 14.0 138 126-269 8-153 (171)
15 2b0v_A Nudix hydrolase; struct 99.8 2.5E-20 8.4E-25 151.9 11.1 128 139-269 6-141 (153)
16 3f6a_A Hydrolase, nudix family 99.8 2.2E-19 7.6E-24 148.1 16.5 113 141-256 6-142 (159)
17 3q93_A 7,8-dihydro-8-oxoguanin 99.8 9.5E-20 3.3E-24 153.9 14.5 127 137-268 21-151 (176)
18 2pbt_A AP4A hydrolase; nudix p 99.8 1.7E-20 5.7E-25 149.4 8.4 121 141-269 4-130 (134)
19 3u53_A BIS(5'-nucleosyl)-tetra 99.8 4.9E-21 1.7E-25 157.8 5.2 138 129-271 3-148 (155)
20 2fb1_A Conserved hypothetical 99.8 1.5E-19 5.2E-24 159.3 14.1 121 134-256 6-135 (226)
21 1rya_A GDP-mannose mannosyl hy 99.8 7.8E-20 2.7E-24 150.0 10.5 121 139-259 16-150 (160)
22 3f13_A Putative nudix hydrolas 99.8 7E-19 2.4E-23 147.4 15.8 111 140-259 15-125 (163)
23 3eds_A MUTT/nudix family prote 99.8 1.6E-19 5.3E-24 148.5 10.9 109 142-254 22-142 (153)
24 3oga_A Nucleoside triphosphata 99.8 5.6E-19 1.9E-23 146.4 13.8 117 141-258 28-159 (165)
25 3gz5_A MUTT/nudix family prote 99.8 1.5E-19 5E-24 160.9 10.5 132 128-259 9-151 (240)
26 3i9x_A MUTT/nudix family prote 99.8 1.6E-19 5.3E-24 153.6 10.0 120 135-254 20-162 (187)
27 3ees_A Probable pyrophosphohyd 99.8 6.3E-19 2.1E-23 143.1 13.0 118 140-259 21-141 (153)
28 1vcd_A NDX1; nudix protein, di 99.8 2.3E-19 7.8E-24 141.6 9.9 111 144-259 6-118 (126)
29 1ktg_A Diadenosine tetraphosph 99.8 4.6E-19 1.6E-23 142.0 11.5 113 151-266 17-136 (138)
30 2w4e_A MUTT/nudix family prote 99.8 1.9E-19 6.6E-24 146.9 9.5 130 140-269 5-143 (145)
31 3exq_A Nudix family hydrolase; 99.8 3.6E-19 1.2E-23 147.7 10.9 124 138-266 7-136 (161)
32 3fk9_A Mutator MUTT protein; s 99.8 3.1E-19 1E-23 152.6 10.6 121 141-268 4-131 (188)
33 2b06_A MUTT/nudix family prote 99.8 4.2E-19 1.4E-23 145.3 10.3 126 137-268 4-136 (155)
34 3r03_A Nudix hydrolase; struct 99.8 9.4E-19 3.2E-23 141.1 11.9 114 144-259 12-130 (144)
35 2rrk_A ORF135, CTP pyrophospho 99.8 1.8E-18 6.2E-23 138.6 12.9 123 141-268 9-134 (140)
36 2o1c_A DATP pyrophosphohydrola 99.8 1E-18 3.5E-23 141.1 11.4 125 136-266 5-147 (150)
37 3son_A Hypothetical nudix hydr 99.8 9.8E-19 3.4E-23 142.4 11.2 115 150-268 18-144 (149)
38 2fml_A MUTT/nudix family prote 99.8 4.8E-18 1.6E-22 153.8 16.6 132 128-259 26-192 (273)
39 1sjy_A MUTT/nudix family prote 99.8 4.2E-18 1.4E-22 139.5 14.1 108 139-246 11-129 (159)
40 3hhj_A Mutator MUTT protein; n 99.8 2.6E-18 8.9E-23 141.4 12.7 115 143-259 32-151 (158)
41 2pqv_A MUTT/nudix family prote 99.8 1E-18 3.5E-23 143.0 8.5 119 141-267 19-146 (154)
42 2yvp_A NDX2, MUTT/nudix family 99.8 8.2E-19 2.8E-23 148.0 7.8 131 139-269 40-180 (182)
43 1mut_A MUTT, nucleoside tripho 99.8 8.8E-19 3E-23 138.3 7.1 106 143-249 7-115 (129)
44 2azw_A MUTT/nudix family prote 99.8 1.9E-18 6.4E-23 139.8 8.9 117 142-266 19-145 (148)
45 1vhz_A ADP compounds hydrolase 99.8 1.2E-17 4E-22 144.1 14.0 133 138-271 47-188 (198)
46 2fkb_A Putative nudix hydrolas 99.7 6.6E-18 2.2E-22 141.8 11.9 123 143-270 39-170 (180)
47 1v8y_A ADP-ribose pyrophosphat 99.7 4.6E-18 1.6E-22 142.0 9.9 104 142-246 35-143 (170)
48 1k2e_A Nudix homolog; nudix/MU 99.7 5.5E-18 1.9E-22 139.6 9.0 108 143-260 3-131 (156)
49 3h95_A Nucleoside diphosphate- 99.7 2.2E-17 7.4E-22 141.9 12.2 112 136-248 21-141 (199)
50 3fcm_A Hydrolase, nudix family 99.7 3.3E-17 1.1E-21 140.4 11.8 122 143-268 48-187 (197)
51 2jvb_A Protein PSU1, mRNA-deca 99.7 1.9E-17 6.4E-22 134.1 9.1 127 143-272 6-143 (146)
52 1q27_A Putative nudix hydrolas 99.7 1.6E-17 5.5E-22 138.3 7.8 104 141-245 34-146 (171)
53 3e57_A Uncharacterized protein 99.7 7.3E-18 2.5E-22 147.6 5.8 125 142-267 69-209 (211)
54 1f3y_A Diadenosine 5',5'''-P1, 99.7 2E-17 6.8E-22 135.8 7.3 100 145-246 19-144 (165)
55 1nqz_A COA pyrophosphatase (MU 99.7 4.6E-17 1.6E-21 138.7 9.0 105 142-246 36-150 (194)
56 2a6t_A SPAC19A8.12; alpha/beta 99.7 1E-16 3.5E-21 145.1 11.2 109 137-247 97-212 (271)
57 1mk1_A ADPR pyrophosphatase; n 99.7 4.1E-17 1.4E-21 141.2 8.1 108 139-246 42-157 (207)
58 1hzt_A Isopentenyl diphosphate 99.7 5.3E-17 1.8E-21 138.0 7.7 101 145-246 37-149 (190)
59 1x51_A A/G-specific adenine DN 99.7 1E-16 3.5E-21 131.5 9.1 112 151-268 33-150 (155)
60 1g0s_A Hypothetical 23.7 kDa p 99.7 9.1E-17 3.1E-21 139.6 9.2 114 133-246 50-178 (209)
61 2kdv_A RNA pyrophosphohydrolas 99.7 1E-15 3.5E-20 127.7 15.2 103 141-246 8-134 (164)
62 2fvv_A Diphosphoinositol polyp 99.7 4E-17 1.4E-21 140.5 6.5 95 150-246 52-149 (194)
63 3o6z_A GDP-mannose pyrophospha 99.7 1E-16 3.4E-21 137.3 8.7 111 135-246 40-165 (191)
64 3rh7_A Hypothetical oxidoreduc 99.7 1.9E-16 6.4E-21 146.8 10.0 115 140-271 182-297 (321)
65 2dsc_A ADP-sugar pyrophosphata 99.7 5.4E-16 1.9E-20 134.6 11.2 105 141-245 63-181 (212)
66 3q91_A Uridine diphosphate glu 99.6 9.8E-16 3.4E-20 134.6 10.9 110 137-246 33-187 (218)
67 1u20_A U8 snoRNA-binding prote 99.6 2.1E-16 7.2E-21 137.7 6.2 111 132-246 36-164 (212)
68 3fjy_A Probable MUTT1 protein; 99.6 1.3E-15 4.3E-20 142.6 9.9 112 151-266 37-176 (364)
69 3fsp_A A/G-specific adenine gl 99.6 2.3E-15 7.8E-20 141.7 11.1 110 144-259 243-356 (369)
70 2xsq_A U8 snoRNA-decapping enz 99.6 2.5E-15 8.5E-20 131.8 8.3 110 132-246 45-172 (217)
71 1q33_A Pyrophosphatase, ADP-ri 99.5 8.2E-14 2.8E-18 127.3 14.9 101 153-259 140-271 (292)
72 2pny_A Isopentenyl-diphosphate 99.5 6.8E-14 2.3E-18 124.9 9.0 104 142-246 71-200 (246)
73 2dho_A Isopentenyl-diphosphate 99.5 8.1E-14 2.8E-18 123.5 9.2 104 142-246 60-189 (235)
74 3dup_A MUTT/nudix family prote 99.3 1.4E-11 4.8E-16 113.0 11.0 116 153-272 134-268 (300)
75 3qsj_A Nudix hydrolase; struct 99.3 2.6E-11 8.9E-16 107.4 11.6 93 152-244 24-185 (232)
76 3kvh_A Protein syndesmos; NUDT 99.1 1.6E-11 5.5E-16 105.5 3.8 90 153-246 45-148 (214)
77 3bho_A Cleavage and polyadenyl 99.0 6.2E-10 2.1E-14 96.4 6.2 61 145-209 64-132 (208)
78 3j20_Y 30S ribosomal protein S 97.7 1.3E-05 4.4E-10 54.1 1.8 33 102-138 17-49 (50)
79 2k4x_A 30S ribosomal protein S 96.6 0.0014 4.8E-08 44.9 2.9 35 102-140 16-50 (55)
80 3h0g_I DNA-directed RNA polyme 96.1 0.0063 2.1E-07 47.6 4.7 37 103-139 3-39 (113)
81 3qt1_I DNA-directed RNA polyme 94.3 0.026 8.9E-07 45.4 3.2 36 102-137 22-57 (133)
82 4esj_A Type-2 restriction enzy 92.7 0.046 1.6E-06 47.9 2.1 43 93-136 22-66 (257)
83 1twf_I B12.6, DNA-directed RNA 91.5 0.089 3.1E-06 41.5 2.4 36 103-138 3-38 (122)
84 1pft_A TFIIB, PFTFIIBN; N-term 91.1 0.15 5E-06 33.6 2.8 32 104-139 5-37 (50)
85 1twf_L ABC10-alpha, DNA-direct 88.8 0.14 4.7E-06 36.6 1.3 29 106-139 30-59 (70)
86 1vq8_Z 50S ribosomal protein L 88.3 0.13 4.4E-06 38.0 0.9 35 97-135 20-54 (83)
87 2hf1_A Tetraacyldisaccharide-1 88.0 0.22 7.4E-06 35.3 1.8 32 102-138 6-37 (68)
88 2jr6_A UPF0434 protein NMA0874 87.8 0.23 7.7E-06 35.2 1.8 34 100-138 4-37 (68)
89 2js4_A UPF0434 protein BB2007; 87.2 0.22 7.4E-06 35.5 1.5 35 100-139 4-38 (70)
90 2pk7_A Uncharacterized protein 86.3 0.44 1.5E-05 33.8 2.7 34 100-138 4-37 (69)
91 1dl6_A Transcription factor II 85.5 0.43 1.5E-05 32.6 2.2 34 101-138 8-42 (58)
92 2akl_A PHNA-like protein PA012 82.3 0.51 1.8E-05 37.6 1.7 31 103-138 26-56 (138)
93 2jny_A Uncharacterized BCR; st 81.4 0.91 3.1E-05 32.0 2.5 35 99-138 5-39 (67)
94 2ct7_A Ring finger protein 31; 81.2 0.55 1.9E-05 34.4 1.4 30 102-135 23-52 (86)
95 4ayb_P DNA-directed RNA polyme 80.9 1 3.5E-05 29.5 2.4 31 106-138 5-35 (48)
96 3jyw_9 60S ribosomal protein L 80.8 1.1 3.7E-05 32.1 2.7 32 101-136 23-54 (72)
97 3u5c_f 40S ribosomal protein S 80.6 0.79 2.7E-05 37.3 2.3 34 101-138 115-150 (152)
98 2zkr_2 60S ribosomal protein L 80.6 0.6 2.1E-05 35.2 1.4 30 102-138 14-43 (97)
99 3cc2_Z 50S ribosomal protein L 79.9 0.44 1.5E-05 37.2 0.5 39 93-135 49-87 (116)
100 2jrp_A Putative cytoplasmic pr 79.9 0.39 1.3E-05 35.2 0.2 9 106-114 33-41 (81)
101 2xzm_9 RPS31E; ribosome, trans 79.8 0.59 2E-05 39.6 1.3 31 103-137 112-142 (189)
102 3h0g_L DNA-directed RNA polyme 79.2 0.97 3.3E-05 31.5 2.1 28 104-136 21-48 (63)
103 2zjr_Z 50S ribosomal protein L 79.2 0.63 2.2E-05 32.1 1.1 22 104-134 30-51 (60)
104 3v2d_5 50S ribosomal protein L 78.9 0.55 1.9E-05 32.4 0.7 21 104-133 30-50 (60)
105 3iz5_m 60S ribosomal protein L 78.3 1 3.5E-05 33.7 2.1 31 101-135 33-63 (92)
106 3j21_i 50S ribosomal protein L 77.2 1 3.6E-05 33.0 1.8 36 97-136 28-63 (83)
107 3m7n_A Putative uncharacterize 77.2 1.2 4.2E-05 37.0 2.5 30 104-139 140-169 (179)
108 1gh9_A 8.3 kDa protein (gene M 77.1 0.67 2.3E-05 33.1 0.7 25 107-137 7-31 (71)
109 3izc_m 60S ribosomal protein R 76.1 1.2 4.2E-05 33.3 2.0 35 97-135 29-63 (92)
110 1ffk_W Ribosomal protein L37AE 75.0 3.4 0.00012 29.5 4.0 37 95-135 18-54 (73)
111 2con_A RUH-035 protein, NIN on 74.2 1.1 3.8E-05 32.6 1.3 14 103-116 29-42 (79)
112 3j21_g 50S ribosomal protein L 73.7 0.97 3.3E-05 30.2 0.8 26 103-136 13-38 (51)
113 2a20_A Regulating synaptic mem 73.7 0.31 1.1E-05 33.5 -1.7 25 104-132 33-57 (62)
114 2k5c_A Uncharacterized protein 73.4 0.66 2.3E-05 34.0 -0.1 40 101-140 5-65 (95)
115 3vdp_A Recombination protein R 70.8 0.4 1.4E-05 41.3 -2.1 94 86-193 50-145 (212)
116 3o9x_A Uncharacterized HTH-typ 70.3 1.8 6.1E-05 33.5 1.8 10 104-113 2-11 (133)
117 2fiy_A Protein FDHE homolog; F 70.0 1.6 5.6E-05 39.5 1.7 34 103-136 181-218 (309)
118 4a17_Y RPL37A, 60S ribosomal p 68.5 1.3 4.5E-05 33.8 0.6 31 101-135 33-63 (103)
119 3u6p_A Formamidopyrimidine-DNA 67.1 2.2 7.7E-05 37.8 1.9 28 105-134 246-273 (273)
120 1ee8_A MUTM (FPG) protein; bet 67.0 2.6 8.8E-05 37.3 2.3 28 105-134 236-263 (266)
121 3u50_C Telomerase-associated p 66.5 5.2 0.00018 33.2 3.9 33 103-142 41-73 (172)
122 1k82_A Formamidopyrimidine-DNA 66.0 2.4 8.3E-05 37.5 1.9 27 105-133 241-267 (268)
123 2xzf_A Formamidopyrimidine-DNA 65.6 2.5 8.6E-05 37.4 1.9 28 105-134 243-270 (271)
124 1k3x_A Endonuclease VIII; hydr 65.1 2.6 8.9E-05 37.1 1.9 27 105-133 235-261 (262)
125 1k81_A EIF-2-beta, probable tr 64.3 2 7E-05 26.3 0.8 31 106-137 2-32 (36)
126 2apo_B Ribosome biogenesis pro 63.7 2.2 7.6E-05 29.3 0.9 25 103-137 5-29 (60)
127 3ga8_A HTH-type transcriptiona 63.6 2.8 9.5E-05 29.8 1.5 9 105-113 3-11 (78)
128 2aus_D NOP10, ribosome biogene 62.2 2.3 7.9E-05 29.3 0.8 25 103-137 4-28 (60)
129 3k7a_M Transcription initiatio 61.8 4.3 0.00015 37.0 2.8 30 104-137 21-53 (345)
130 3k1f_M Transcription initiatio 61.0 3.9 0.00013 34.3 2.1 35 102-138 19-54 (197)
131 2d74_B Translation initiation 61.0 5 0.00017 32.5 2.7 43 94-137 94-136 (148)
132 3w0f_A Endonuclease 8-like 3; 59.4 5.1 0.00018 35.9 2.8 32 105-136 252-283 (287)
133 3j21_e 50S ribosomal protein L 59.0 4.4 0.00015 28.0 1.7 25 103-134 16-40 (62)
134 2kpi_A Uncharacterized protein 58.2 4.5 0.00016 27.2 1.7 32 100-138 6-39 (56)
135 1nui_A DNA primase/helicase; z 57.5 3.4 0.00012 35.7 1.3 32 101-135 11-42 (255)
136 1vdd_A Recombination protein R 56.7 0.59 2E-05 40.7 -3.7 78 86-177 36-113 (228)
137 1l1o_C Replication protein A 7 53.9 18 0.00061 29.8 5.1 33 104-142 43-77 (181)
138 3cw2_K Translation initiation 53.0 5.3 0.00018 32.0 1.6 40 96-136 95-134 (139)
139 1gnf_A Transcription factor GA 52.5 4.9 0.00017 26.0 1.1 32 103-135 3-34 (46)
140 2e9h_A EIF-5, eukaryotic trans 51.7 10 0.00034 31.0 3.1 43 95-137 94-137 (157)
141 2jmo_A Parkin; IBR, E3 ligase, 50.3 10 0.00035 27.1 2.6 29 103-135 24-59 (80)
142 2con_A RUH-035 protein, NIN on 49.9 6.6 0.00023 28.4 1.5 56 106-172 17-76 (79)
143 2lcq_A Putative toxin VAPC6; P 49.5 5.2 0.00018 32.3 1.1 24 106-135 134-157 (165)
144 1vq8_1 50S ribosomal protein L 49.2 3.2 0.00011 28.2 -0.2 26 102-134 15-40 (57)
145 1wd2_A Ariadne-1 protein homol 49.0 9.2 0.00032 25.9 2.1 30 102-135 4-35 (60)
146 2kwq_A Protein MCM10 homolog; 48.3 4.9 0.00017 30.0 0.7 32 103-139 47-78 (92)
147 2kdx_A HYPA, hydrogenase/ureas 47.1 5.7 0.00019 30.5 0.9 48 82-135 37-99 (119)
148 2jrp_A Putative cytoplasmic pr 46.3 13 0.00045 27.0 2.6 24 105-134 3-26 (81)
149 1qyp_A RNA polymerase II; tran 45.8 7.1 0.00024 26.0 1.1 33 104-136 15-53 (57)
150 4bbr_M Transcription initiatio 44.4 8.5 0.00029 35.1 1.8 30 104-135 21-51 (345)
151 1yfu_A 3-hydroxyanthranilate-3 44.4 6 0.00021 32.9 0.7 35 106-140 124-173 (174)
152 2g2k_A EIF-5, eukaryotic trans 43.4 7.5 0.00025 32.2 1.1 44 94-137 86-130 (170)
153 1dvp_A HRS, hepatocyte growth 43.3 9.8 0.00034 32.2 1.9 33 99-138 157-189 (220)
154 2vut_I AREA, nitrogen regulato 42.7 5.4 0.00019 25.4 0.1 30 105-135 2-31 (43)
155 1vfy_A Phosphatidylinositol-3- 42.4 12 0.00042 26.1 2.0 33 99-138 7-39 (73)
156 2jne_A Hypothetical protein YF 41.0 11 0.00038 28.4 1.6 25 105-135 33-57 (101)
157 3dfx_A Trans-acting T-cell-spe 40.5 7.7 0.00026 26.8 0.6 33 103-136 6-38 (63)
158 1qxf_A GR2, 30S ribosomal prot 40.3 13 0.00044 26.0 1.7 26 107-135 10-35 (66)
159 1nee_A EIF-2-beta, probable tr 39.6 7.6 0.00026 31.1 0.5 42 95-137 93-134 (138)
160 1zvf_A 3-hydroxyanthranilate 3 39.1 9.8 0.00034 31.7 1.2 35 106-140 126-175 (176)
161 1wii_A Hypothetical UPF0222 pr 38.8 14 0.00048 27.0 1.8 31 105-135 24-56 (85)
162 2f4m_A Peptide N-glycanase; gl 38.1 20 0.00069 32.2 3.1 26 91-116 61-93 (295)
163 3j20_W 30S ribosomal protein S 37.7 15 0.00052 25.4 1.7 25 107-134 18-42 (63)
164 2k5r_A Uncharacterized protein 37.2 19 0.00064 27.0 2.4 18 100-117 4-21 (97)
165 3a43_A HYPD, hydrogenase nicke 36.5 9.6 0.00033 30.3 0.7 35 82-116 35-82 (139)
166 2owo_A DNA ligase; protein-DNA 36.1 12 0.0004 37.5 1.4 26 104-133 405-433 (671)
167 3irb_A Uncharacterized protein 35.7 11 0.00038 30.0 0.9 25 104-136 47-71 (145)
168 1x3z_A Peptide: N-glycanase; h 35.5 26 0.00091 32.0 3.5 22 93-114 101-129 (335)
169 1joc_A EEA1, early endosomal a 35.1 23 0.00078 27.5 2.7 33 99-137 62-96 (125)
170 4gat_A Nitrogen regulatory pro 34.6 7.2 0.00025 27.2 -0.3 33 103-136 8-40 (66)
171 4glx_A DNA ligase; inhibitor, 34.0 14 0.00047 36.4 1.5 26 104-133 405-433 (586)
172 1x0t_A Ribonuclease P protein 33.9 19 0.00066 27.8 2.0 33 103-135 64-103 (120)
173 3pwf_A Rubrerythrin; non heme 33.7 16 0.00054 30.0 1.6 21 107-134 141-161 (170)
174 2x5c_A Hypothetical protein OR 33.7 86 0.0029 23.4 5.5 19 151-172 72-90 (131)
175 1iym_A EL5; ring-H2 finger, ub 33.4 23 0.00079 22.3 2.1 18 97-114 36-53 (55)
176 3u5c_b RP61, YS20, 40S ribosom 33.3 19 0.00065 26.2 1.7 27 106-135 36-62 (82)
177 4a18_A RPL37, ribosomal protei 33.3 8 0.00027 28.8 -0.3 28 101-135 13-40 (94)
178 3p2a_A Thioredoxin 2, putative 33.1 24 0.00081 26.8 2.5 32 106-139 7-38 (148)
179 3r8s_0 50S ribosomal protein L 33.0 13 0.00044 25.0 0.7 20 104-133 27-46 (56)
180 3sgi_A DNA ligase; HET: DNA AM 32.8 9.2 0.00031 37.9 0.0 25 104-131 415-439 (615)
181 4gop_C Putative uncharacterize 32.8 34 0.0012 31.9 4.0 43 104-151 308-353 (444)
182 2gmg_A Hypothetical protein PF 32.4 34 0.0012 26.0 3.1 36 104-144 67-102 (105)
183 3iz5_l 60S ribosomal protein L 32.3 9.3 0.00032 28.4 -0.0 27 101-134 13-39 (94)
184 2yw8_A RUN and FYVE domain-con 32.0 28 0.00096 24.8 2.5 33 98-136 11-45 (82)
185 2ea6_A Ring finger protein 4; 31.9 22 0.00075 23.4 1.9 21 95-115 47-67 (69)
186 2xzm_6 RPS27E; ribosome, trans 31.5 21 0.00071 25.9 1.7 26 107-135 35-60 (81)
187 3na7_A HP0958; flagellar bioge 31.1 18 0.00063 31.3 1.6 38 104-141 198-237 (256)
188 2l7x_A Envelope glycoprotein; 31.0 25 0.00084 24.9 1.9 34 95-134 21-54 (77)
189 2k3r_A Ribonuclease P protein 30.4 29 0.00099 26.9 2.5 33 103-135 59-98 (123)
190 1x4u_A Zinc finger, FYVE domai 30.1 34 0.0012 24.4 2.7 33 99-137 7-41 (84)
191 3iz6_X 40S ribosomal protein S 30.0 20 0.00069 26.3 1.4 28 106-136 38-65 (86)
192 1z2q_A LM5-1; membrane protein 30.0 31 0.0011 24.6 2.5 33 99-137 14-48 (84)
193 1y02_A CARP2, FYVE-ring finger 29.4 32 0.0011 26.7 2.6 27 105-137 20-46 (120)
194 3zyq_A Hepatocyte growth facto 28.8 24 0.00083 30.0 2.0 33 100-139 161-193 (226)
195 1yuz_A Nigerythrin; rubrythrin 28.2 17 0.00057 30.6 0.9 23 106-135 173-195 (202)
196 2qkd_A Zinc finger protein ZPR 27.6 23 0.00077 33.3 1.7 33 104-136 220-259 (404)
197 1lv3_A Hypothetical protein YA 27.3 21 0.0007 25.1 1.0 30 103-135 8-38 (68)
198 2fiy_A Protein FDHE homolog; F 27.2 27 0.00091 31.5 2.0 25 103-135 207-231 (309)
199 1wfk_A Zinc finger, FYVE domai 27.1 35 0.0012 24.7 2.3 29 104-138 9-37 (88)
200 3bbo_3 Ribosomal protein L33; 26.9 25 0.00086 24.4 1.4 14 104-117 49-62 (66)
201 3t7l_A Zinc finger FYVE domain 26.6 41 0.0014 24.3 2.7 30 103-138 19-48 (90)
202 2kae_A GATA-type transcription 25.6 24 0.00082 24.9 1.1 33 103-135 7-39 (71)
203 1dgs_A DNA ligase; AMP complex 25.3 23 0.00079 35.4 1.4 24 104-133 403-428 (667)
204 2ecm_A Ring finger and CHY zin 25.2 34 0.0012 21.3 1.8 18 97-114 36-53 (55)
205 1l8d_A DNA double-strand break 25.1 17 0.00057 27.2 0.2 12 104-115 47-58 (112)
206 1ptq_A Protein kinase C delta 25.0 49 0.0017 20.7 2.5 30 102-136 9-38 (50)
207 1d0q_A DNA primase; zinc-bindi 24.5 33 0.0011 25.4 1.8 21 178-199 79-99 (103)
208 2vrw_B P95VAV, VAV1, proto-onc 24.4 37 0.0013 31.0 2.5 31 103-138 356-386 (406)
209 3bvo_A CO-chaperone protein HS 24.3 43 0.0015 28.2 2.7 31 103-138 9-39 (207)
210 2fnf_X Putative RAS effector N 24.2 45 0.0015 23.2 2.4 30 101-138 32-61 (72)
211 2co8_A NEDD9 interacting prote 23.8 50 0.0017 23.0 2.6 42 99-140 37-79 (82)
212 1v6g_A Actin binding LIM prote 23.5 16 0.00054 25.4 -0.2 17 99-115 36-52 (81)
213 1wig_A KIAA1808 protein; LIM d 23.4 33 0.0011 23.4 1.5 38 99-137 26-64 (73)
214 2kr4_A Ubiquitin conjugation f 23.4 36 0.0012 24.1 1.8 23 95-117 39-61 (85)
215 2ect_A Ring finger protein 126 23.2 36 0.0012 23.1 1.7 21 97-117 45-65 (78)
216 1vd4_A Transcription initiatio 22.8 30 0.001 22.3 1.2 31 106-137 16-50 (62)
217 2bay_A PRE-mRNA splicing facto 22.7 31 0.001 23.1 1.2 23 95-117 29-51 (61)
218 3po3_S Transcription elongatio 22.6 44 0.0015 27.5 2.4 32 105-136 138-175 (178)
219 2zjr_1 50S ribosomal protein L 22.4 23 0.00078 23.7 0.5 14 104-117 38-51 (55)
220 2yuu_A NPKC-delta, protein kin 22.3 69 0.0023 22.6 3.1 32 102-138 26-57 (83)
221 1x4j_A Ring finger protein 38; 22.2 45 0.0015 22.5 2.1 20 97-116 53-72 (75)
222 2pzi_A Probable serine/threoni 21.9 26 0.00088 34.3 0.9 33 104-136 34-66 (681)
223 2xeu_A Ring finger protein 4; 21.8 39 0.0013 21.7 1.6 22 95-116 35-56 (64)
224 3uej_A NPKC-delta, protein kin 21.5 59 0.002 21.7 2.5 31 102-137 18-48 (65)
225 2ftc_P Mitochondrial ribosomal 21.4 25 0.00084 23.2 0.5 14 104-117 36-49 (52)
226 1t1h_A Gspef-atpub14, armadill 21.4 45 0.0015 22.6 1.9 22 95-116 33-55 (78)
227 2kre_A Ubiquitin conjugation f 21.4 43 0.0015 24.6 1.9 22 95-116 54-75 (100)
228 1lko_A Rubrerythrin all-iron(I 21.2 25 0.00085 29.2 0.6 24 106-135 157-180 (191)
229 1wgm_A Ubiquitin conjugation f 21.2 45 0.0015 24.4 2.0 23 95-117 48-70 (98)
230 3ng2_A RNF4, snurf, ring finge 21.0 40 0.0014 22.2 1.6 22 95-116 42-63 (71)
231 2kiz_A E3 ubiquitin-protein li 20.7 46 0.0016 21.9 1.8 23 95-117 42-64 (69)
232 3lqh_A Histone-lysine N-methyl 20.2 55 0.0019 27.1 2.5 27 105-134 3-29 (183)
233 2djb_A Polycomb group ring fin 20.2 48 0.0017 22.2 1.9 23 95-117 41-63 (72)
No 1
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=100.00 E-value=5.6e-39 Score=291.53 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=171.0
Q ss_pred ecceeecccccccCCCCCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEe
Q 023914 70 RASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIE 149 (275)
Q Consensus 70 ~~~~~~~~r~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~ 149 (275)
.++++.++|.++..++.++.++++|.+|.+|+++++|||.||+++... +++++++|++||+.+||++.++|++++.
T Consensus 73 ~~~~~~~lr~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~----~~~~~~~C~~C~~~~yp~~~~~viv~v~ 148 (269)
T 1vk6_A 73 RRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPS----KTEWAMLCSHCRERYYPQIAPCIIVAIR 148 (269)
T ss_dssp CSSCEECTTHHHHHCHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEEC----SSSSCEEESSSSCEECCCCEEEEEEEEE
T ss_pred CCccchhHHHHhcCCHHHhHHHHHHHHHHhhhhcCCccccCCCcCccC----CCceeeeCCCCCCEecCCCCcEEEEEEE
Confidence 467788999887557778889999999999999999999999999776 6889999999999999999999999999
Q ss_pred eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCCCCC
Q 023914 150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSP 229 (275)
Q Consensus 150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e~~~ 229 (275)
++++|||+||+..+ .|+|++|||++|+|||+++||+||++||||+++..+++++++++++++..+++|.+.+.++++.+
T Consensus 149 ~~~~vLL~rr~~~~-~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~~ 227 (269)
T 1vk6_A 149 RDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVI 227 (269)
T ss_dssp ETTEEEEEEETTTC-SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred eCCEEEEEEecCCC-CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCCCCEEEEEEEEEECCCCcCC
Confidence 99999999999876 79999999999999999999999999999999999999999999999999999999988777766
Q ss_pred C-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 023914 230 G-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMT 269 (275)
Q Consensus 230 ~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~ 269 (275)
+ +|..+++||+++|++.. . ....++..+|+.|++..+
T Consensus 228 ~~~E~~~~~W~~~~el~~l--~-~~~si~~~li~~~l~~~r 265 (269)
T 1vk6_A 228 DPKELLEANWYRYDDLPLL--P-PPGTVARRLIEDTVAMCR 265 (269)
T ss_dssp CTTTEEEEEEEETTSCCSC--C-CTTSHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEEHHHhhhc--c-cCcHHHHHHHHHHHHHHH
Confidence 4 79999999999999853 2 334456677889987643
No 2
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=100.00 E-value=2.7e-32 Score=233.58 Aligned_cols=164 Identities=47% Similarity=0.853 Sum_probs=143.6
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHH
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAA 182 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~e 182 (275)
.++|||.||+++....+.|+...+..|+.||+..|++|.++|.+++.++++|||++|...+..|.|++|||++|+|||++
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~ 81 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLV 81 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTCCHH
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCCCCeEECceeeccCCCCHH
Confidence 47999999999988878777788899999999999999999999998899999999987666789999999999999999
Q ss_pred HHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHH
Q 023914 183 EGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVR 262 (275)
Q Consensus 183 eAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~ 262 (275)
+||+||++||||+++....+++.+.++..+..+++|.+....+++...+|..+++|+++++++...+.++....++.
T Consensus 82 ~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~--- 158 (189)
T 3cng_A 82 QGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLK--- 158 (189)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEEEEEEGGGTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHH---
T ss_pred HHHHHHHHHHHCCccccceeEEEEecCCCcEEEEEEEEEeCCCccCCCccceeEEEECHHHcCcccccChHHHHHHH---
Confidence 99999999999999988888888888777888899999987776666788999999999999855677887776655
Q ss_pred HHHhhcc
Q 023914 263 FYFEHMT 269 (275)
Q Consensus 263 ~~l~~~~ 269 (275)
+|++++.
T Consensus 159 ~~l~~~~ 165 (189)
T 3cng_A 159 RYMEERH 165 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 7777653
No 3
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.91 E-value=1.4e-25 Score=207.98 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=138.1
Q ss_pred cceeecccccccC--CCCC----ccHH-HHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEE
Q 023914 71 ASRVCATRSESNQ--DATS----SHPS-SAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMV 143 (275)
Q Consensus 71 ~~~~~~~r~~~~~--~~~~----~~~~-~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~ 143 (275)
++....+|+++.. +..+ .-.. +.|..|.+|+.+++||+.||+++... ..+. .|+...||++.++
T Consensus 140 ~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~------~~~~---~~~~~~~~~~~~~ 210 (352)
T 2qjt_B 140 NFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI------EYKR---LWLKAPFKPNFVT 210 (352)
T ss_dssp CCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH---HHSSSSSCCEEEE
T ss_pred CCCchHHHHHHhccCcccchhhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH------HHHH---HhcccCCCCCceE
Confidence 4556678877653 3333 2456 89999999999999999999997432 1222 6899999999999
Q ss_pred EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccce----eeEEEEeCCC------CE
Q 023914 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS----PFAQLDIPRI------GQ 213 (275)
Q Consensus 144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~----~~~~~~~~~~------~~ 213 (275)
|.+++.++++|||++|...+..|.|++|||++|+|||+++||+||++||||+++.... +.....++.+ +.
T Consensus 211 v~~vv~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (352)
T 2qjt_B 211 VDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRT 290 (352)
T ss_dssp EEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSEE
T ss_pred EEEEEEECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCccE
Confidence 9998889999999999877667999999999999999999999999999999987543 2233334332 24
Q ss_pred EEEEEEEEEcCCC--CC--CCCCceeEEEecC-CCCCCC-CCCCcHHHHHHHHHHHHHh
Q 023914 214 IYIIFLAKLKRPH--FS--PGPESSECRLFAL-DEIPFD-SLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 214 ~~~~f~a~~~~~e--~~--~~~E~~d~~W~~~-deL~~~-~l~~~s~~~al~li~~~l~ 266 (275)
.+++|.+.+..++ +. .++|..+++|+++ ++++.. ...++..+.+++ .+++
T Consensus 291 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~---~~~~ 346 (352)
T 2qjt_B 291 ISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIIT---ILLE 346 (352)
T ss_dssp EEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHH---HHHH
T ss_pred EEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHH---HHHH
Confidence 6778888887665 32 3588999999999 998753 123445555444 5544
No 4
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.87 E-value=1.1e-22 Score=165.18 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=93.3
Q ss_pred cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCC----EE
Q 023914 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG----QI 214 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~----~~ 214 (275)
..++++||.++++|||++|. .|.|++|||++|+|||+++||+||++||||+++....+++...+ +..+ ..
T Consensus 4 ~~aag~vv~~~~~vLL~~r~----~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (134)
T 3i7u_A 4 EFSAGGVLFKDGEVLLIKTP----SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT 79 (134)
T ss_dssp EEEEEEEEEETTEEEEEECT----TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEeC----CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEE
Confidence 35677788889999999975 57899999999999999999999999999999988888775432 2111 23
Q ss_pred EEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914 215 YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH 267 (275)
Q Consensus 215 ~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~ 267 (275)
.++|.+...++++.+++|+.+++||+++|++. .+.++..+..++ ++++.
T Consensus 80 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~-~l~~~~~r~il~---~a~~l 128 (134)
T 3i7u_A 80 VKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKK-LLKYKGDKEIFE---KALKL 128 (134)
T ss_dssp EEEEEEEEEEECCCCCTTSSEEEEEEHHHHHH-HBCSHHHHHHHH---HHHHH
T ss_pred EEEEEEEEcCCcCcCChhheEEEEEEHHHHhh-hcCChHHHHHHH---HHHHH
Confidence 45688888888888888999999999999874 245676665444 55443
No 5
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.87 E-value=6e-21 Score=153.85 Aligned_cols=126 Identities=24% Similarity=0.472 Sum_probs=99.6
Q ss_pred CCccccCCcEEEEEEEee---CCe--EEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE
Q 023914 133 GKIAYQNPKMVVGCLIEH---DKK--ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD 207 (275)
Q Consensus 133 g~~~y~~p~~~V~viI~~---~~~--iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~ 207 (275)
|+. |++|.++|.+++.+ +++ +||++|...+ +.|++|||++|+|||+++||+||++||||+++....+++.+.
T Consensus 2 ~~~-y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 78 (139)
T 2yyh_A 2 GFN-VKTPLLATDVIIRLWDGENFKGIVLIERKYPP--VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYS 78 (139)
T ss_dssp CCC-CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS--CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_pred Ccc-ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC--CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEEC
Confidence 567 89999988887765 778 9999998654 349999999999999999999999999999998888888776
Q ss_pred eCC----CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914 208 IPR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 208 ~~~----~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~ 266 (275)
.+. .+..+++|.+.. .+++...+|..+++|+++++++...+.++. .. ++++|++
T Consensus 79 ~~~~~~~~~~~~~~f~~~~-~~~~~~~~e~~~~~W~~~~el~~~~l~~~~-~~---~l~~~l~ 136 (139)
T 2yyh_A 79 DPERDPRAHVVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIPLDKLVFDH-KK---IILDFLK 136 (139)
T ss_dssp CTTSCTTSCEEEEEEEEEE-ESCCCCCTTEEEEEEECTTSCCGGGBCTTH-HH---HHHHHHH
T ss_pred CCCcCCCceEEEEEEEEec-CCccCCCCCcceEEEEEHHHCCHhhcCCCH-HH---HHHHHHh
Confidence 543 346677888888 455556688899999999999822456664 33 3336665
No 6
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.86 E-value=9.5e-21 Score=164.09 Aligned_cols=118 Identities=26% Similarity=0.417 Sum_probs=96.2
Q ss_pred CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--
Q 023914 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP-- 209 (275)
Q Consensus 132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~-- 209 (275)
|+...|++|.++|.+++.++++|||++|. ..|.|++|||++|+|||+++||+||++||||+++....+++.+...
T Consensus 59 ~~~~~~~~~~~~v~~vv~~~~~vLLv~r~---~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~ 135 (205)
T 3q1p_A 59 ASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKH 135 (205)
T ss_dssp SCCCSSCCCEEEEEEEEEETTEEEEEEC------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHH
T ss_pred ccccCCCCCcceEEEEEEECCEEEEEEEc---CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEecccc
Confidence 34444999999998888889999999987 3689999999999999999999999999999999988888887631
Q ss_pred -----CCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCc
Q 023914 210 -----RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFS 252 (275)
Q Consensus 210 -----~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~ 252 (275)
..+...++|.+...++++..++|..+++|+++++++...+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~ 183 (205)
T 3q1p_A 136 QPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARN 183 (205)
T ss_dssp SCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBCTTTC
T ss_pred CCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcCCCcc
Confidence 1245667788888777777778999999999999996544333
No 7
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.86 E-value=1.1e-22 Score=187.23 Aligned_cols=149 Identities=17% Similarity=0.284 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCcee
Q 023914 90 PSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWT 169 (275)
Q Consensus 90 ~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~ 169 (275)
..+.+..+..|+...+||..||...... ..+ . .|+...||++.++|.+++.++++|||++|...+.+|.|+
T Consensus 161 p~~v~~~i~~~~~~~r~~~l~~~~~~~~------~~~-~--~~~~~~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~g~w~ 231 (341)
T 2qjo_A 161 PPAIADYLQTFQKSERYIALCDEYQFLQ------AYK-Q--AWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIA 231 (341)
T ss_dssp CHHHHHHHHHHTTSHHHHHHHHHHHHHH------HHH-H--TTTTSSSCCCEEEEEEEEEETTEEEEEECCSSSSTTCEE
T ss_pred CHHHHHHHHHhcchHHHHHHHHHHHHHH------HHH-h--hhhccCCCCCceEEEEEEEeCCEEEEEEecCCCCCCeEE
Confidence 3577888999999999999998875332 111 1 288888999999999999899999999998766679999
Q ss_pred eeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeE----EEEe--CC----CCEEEEEEEEEEcCCCC---CCCCCceeE
Q 023914 170 LPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA----QLDI--PR----IGQIYIIFLAKLKRPHF---SPGPESSEC 236 (275)
Q Consensus 170 lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~----~~~~--~~----~~~~~~~f~a~~~~~e~---~~~~E~~d~ 236 (275)
+|||++|+|||+++||+||++||||+++....+++ ...+ +. .+..+++|.+....++. ..++|..++
T Consensus 232 lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~ 311 (341)
T 2qjo_A 232 LPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKA 311 (341)
T ss_dssp CSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CE
T ss_pred CCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeE
Confidence 99999999999999999999999999988665432 2233 32 23567888888766553 234788899
Q ss_pred EEecCCCCCCC
Q 023914 237 RLFALDEIPFD 247 (275)
Q Consensus 237 ~W~~~deL~~~ 247 (275)
+|+++++++..
T Consensus 312 ~W~~~~el~~~ 322 (341)
T 2qjo_A 312 WWMSLADLYAQ 322 (341)
T ss_dssp EEEEHHHHHHT
T ss_pred EEeeHHHHhhh
Confidence 99999999853
No 8
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.85 E-value=1.1e-20 Score=154.55 Aligned_cols=126 Identities=24% Similarity=0.419 Sum_probs=100.0
Q ss_pred CCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC---CEEE
Q 023914 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI---GQIY 215 (275)
Q Consensus 139 ~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~---~~~~ 215 (275)
+|..+|++++.+++++||++|.. +..|.|.+|||++|+|||+++||+||++||||+++....+++...+..+ ....
T Consensus 3 ~p~~~v~~ii~~~~~vLl~~r~~-~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T 3shd_A 3 KPHVTVACVVHAEGKFLVVEETI-NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR 81 (153)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEE-TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEE
T ss_pred CCceEEEEEEEeCCEEEEEEecC-CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEE
Confidence 56788888899999999999973 3468899999999999999999999999999999999998887765432 3556
Q ss_pred EEEEEEEcCCC-CCC-CCCceeEEEecCCCC-CCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 216 IIFLAKLKRPH-FSP-GPESSECRLFALDEI-PFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 216 ~~f~a~~~~~e-~~~-~~E~~d~~W~~~deL-~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
++|.+....+. ..+ ++|..+++|++++++ .......+....++. +|++++
T Consensus 82 ~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~---~~~~~~ 134 (153)
T 3shd_A 82 FLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIR---CYQSGQ 134 (153)
T ss_dssp EEEEEECSSCCCCCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHH---HHHHTC
T ss_pred EEEEEEccccCcCCCCcccceeeEEecHHHhhccccccCchHHHHHH---HHHhCC
Confidence 78888877653 333 488899999999999 222445566665555 888764
No 9
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=153.34 Aligned_cols=125 Identities=25% Similarity=0.333 Sum_probs=98.8
Q ss_pred EEEEE-EEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEE
Q 023914 142 MVVGC-LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLA 220 (275)
Q Consensus 142 ~~V~v-iI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a 220 (275)
.++++ +++++++|||++|...+..|.|++|||++|.|||+++||+||++||||+++....+++.+... .+...++|.+
T Consensus 21 ~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~~~~~~~f~~ 99 (156)
T 3gg6_A 21 YVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG-PSWVRFVFLA 99 (156)
T ss_dssp EEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS-TTEEEEEEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC-CCEEEEEEEE
Confidence 34443 445678999999987666799999999999999999999999999999999999998887643 4567778888
Q ss_pred EEcCCCCC----CCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 221 KLKRPHFS----PGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 221 ~~~~~e~~----~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
....++.. .++|..+++|+++++++. .+..+....++.....|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~-~~~~~~~~~~l~~~~~~~~~~ 150 (156)
T 3gg6_A 100 RPTGGILKTSKEADAESLQAAWYPRTSLPT-PLRAHDILHLVELAAQYRQQA 150 (156)
T ss_dssp EEEEECCCCGGGCSSSCSEEEEEETTSCCS-SBSCTHHHHHHHHHHHHHHHH
T ss_pred EeeCCeeccCCCCCcceeeeEEEcHHHCcc-cccchhHHHHHHHHHHHhhcC
Confidence 87665533 237888999999999996 445566666777666776654
No 10
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.84 E-value=3e-20 Score=153.58 Aligned_cols=126 Identities=25% Similarity=0.308 Sum_probs=96.4
Q ss_pred CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC-
Q 023914 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR- 210 (275)
Q Consensus 132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~- 210 (275)
+.....+.+..+|.+++.++++|||++|...+..|.|.+|||++|+|||+++||+||++||||+++....+++.+....
T Consensus 20 ~~m~~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 99 (157)
T 4dyw_A 20 GSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDA 99 (157)
T ss_dssp ------CCCEEEEEEEEEETTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEET
T ss_pred CCCCCCCCceeEEEEEEEECCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeecc
Confidence 3344456677888888888999999999977667999999999999999999999999999999999888888765432
Q ss_pred -C--CEEEEEEEEEEcCCCCC--CCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 211 -I--GQIYIIFLAKLKRPHFS--PGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 211 -~--~~~~~~f~a~~~~~e~~--~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
. +..+++|.+....++.. ..+|..+++|+++++++. ...+....+++
T Consensus 100 ~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~--~l~~~~~~~l~ 151 (157)
T 4dyw_A 100 ANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ--PLTHATRIALE 151 (157)
T ss_dssp TTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS--SBCHHHHHHHH
T ss_pred CCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc--ccCHHHHHHHH
Confidence 2 34557788877665543 237889999999999995 34455555554
No 11
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.84 E-value=3.9e-20 Score=160.33 Aligned_cols=123 Identities=32% Similarity=0.538 Sum_probs=95.3
Q ss_pred CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe---
Q 023914 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--- 208 (275)
Q Consensus 132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--- 208 (275)
|+...|++|.+.|.++|.++++|||++|. .|.|++|||++|+|||+++||+||++||||+++....+++.+.+
T Consensus 61 ~~~~~y~~~~~~v~~vv~~~~~vLLvrr~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~ 136 (206)
T 3o8s_A 61 CNETGYQTPKLDTRAAIFQEDKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKN 136 (206)
T ss_dssp -------CCEEEEEEEEEETTEEEEEECT----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHH
T ss_pred ccccCCCCCCccEEEEEEECCEEEEEEec----CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEecccc
Confidence 44445899999998888888999999987 68899999999999999999999999999999999998888762
Q ss_pred CC----CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 209 PR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 209 ~~----~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
.. .+...++|.+....+++..++|..+++|+++++++...+. +.....++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~-~~~~~~l~ 190 (206)
T 3o8s_A 137 NPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLG-KNTAEQLA 190 (206)
T ss_dssp CC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTT-TCCHHHHH
T ss_pred CCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhccCC-CchHHHHH
Confidence 22 2455677888887777767789999999999999965443 33344344
No 12
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=2.7e-20 Score=152.56 Aligned_cols=124 Identities=23% Similarity=0.256 Sum_probs=96.0
Q ss_pred cEEEEEEEe-eCCeEEEEEeccC--CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEEE
Q 023914 141 KMVVGCLIE-HDKKILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQIY 215 (275)
Q Consensus 141 ~~~V~viI~-~~~~iLL~rr~~~--p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~~ 215 (275)
..+|.+++. .+++|||++|... +.+|.|.+|||++|+||++++||+||++||||+.+....+++.+.+. .....+
T Consensus 8 ~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 87 (153)
T 3grn_A 8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVIA 87 (153)
T ss_dssp EEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEEE
T ss_pred EEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEEE
Confidence 345555554 5789999999864 35799999999999999999999999999999999988888876544 344667
Q ss_pred EEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914 216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH 267 (275)
Q Consensus 216 ~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~ 267 (275)
++|.+....+++..++|..+++|++++++......++..+..++ .+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~---~l~~~ 136 (153)
T 3grn_A 88 IVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFE---RFDRE 136 (153)
T ss_dssp EEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHH---HHHHH
T ss_pred EEEEEEecCCcEecCCCcceEEEEEHHHhhhcccchHHHHHHHH---HHhcc
Confidence 78888887777766789999999999999965422344554444 55543
No 13
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.84 E-value=3.9e-20 Score=149.42 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCcEEEEEEEeeCCeEEEEEeccCC---CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCE
Q 023914 139 NPKMVVGCLIEHDKKILLCKRKIEP---SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQ 213 (275)
Q Consensus 139 ~p~~~V~viI~~~~~iLL~rr~~~p---~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~ 213 (275)
++..++++++.++++|||++|...+ .+|.|.+|||++|+||++++||.||++||||+++...++++.+.+.+ .+.
T Consensus 4 ~~~~~v~~vi~~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 3gwy_A 4 KSIEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEI 83 (140)
T ss_dssp SCEEEEEEEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCE
T ss_pred eEEEEEEEEEEeCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceE
Confidence 4455667777779999999998765 57899999999999999999999999999999999999888876543 457
Q ss_pred EEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914 214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH 267 (275)
Q Consensus 214 ~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~ 267 (275)
.+++|.+....+++.. +|..+++|+++++++...+. +..+.+++ .+.+.
T Consensus 84 ~~~~f~~~~~~~~~~~-~E~~~~~W~~~~el~~~~~~-~~~~~il~---~~~~~ 132 (140)
T 3gwy_A 84 TMHAFLCHPVGQRYVL-KEHIAAQWLSTREMAILDWA-EADKPIVR---KISEQ 132 (140)
T ss_dssp EEEEEEEEECCSCCCC-CSSCEEEEECHHHHTTSCBC-GGGHHHHH---HHHC-
T ss_pred EEEEEEEEecCCcccc-cccceeEeccHHHHhhCCCC-cccHHHHH---HHHhC
Confidence 7788999987765443 68889999999999965443 44444444 55543
No 14
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.83 E-value=4.2e-20 Score=154.03 Aligned_cols=138 Identities=20% Similarity=0.266 Sum_probs=93.6
Q ss_pred eeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE
Q 023914 126 RAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205 (275)
Q Consensus 126 ~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~ 205 (275)
...|+.+.........+.|++++.++++|||++|... .|.|++|||++|+||++++||+||++||||+++....+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 85 (171)
T 3id9_A 8 CKFNRKRRLYIENIMQVRVTGILIEDEKVLLVKQKVA--NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYV 85 (171)
T ss_dssp --------------CEEEEEEEEEETTEEEEEECSST--TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred cccChhhhhccCCceEEEEEEEEEECCEEEEEEEECC--CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEE
Confidence 3456666665556667788888888999999999863 68999999999999999999999999999999988888888
Q ss_pred EEeCCC--CEEEEEEEEEEcCCCCCC-----C-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 023914 206 LDIPRI--GQIYIIFLAKLKRPHFSP-----G-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMT 269 (275)
Q Consensus 206 ~~~~~~--~~~~~~f~a~~~~~e~~~-----~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~ 269 (275)
+..+.. ...++.|.+....+++.. + +|..+++|++++++....+.. ..... +++.+....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-~~~~~---l~~~~~~~~ 153 (171)
T 3id9_A 86 CDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSE-TFINL---ISGGLANAG 153 (171)
T ss_dssp EEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCT-TCSHH---HHHGGGGTT
T ss_pred EcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCH-HHHHH---HHHhhcccc
Confidence 776543 456677888877665432 2 788899999999999654443 33333 336665543
No 15
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.83 E-value=2.5e-20 Score=151.93 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=97.0
Q ss_pred CCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--C--EE
Q 023914 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--G--QI 214 (275)
Q Consensus 139 ~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~--~~ 214 (275)
+|..+|++++.++++|||++|...+.+|.|.+|||++|+|||+++||+||++||||+++....+++.+.+..+ + ..
T Consensus 6 ~~~~~v~~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (153)
T 2b0v_A 6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL 85 (153)
T ss_dssp CCEEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred cCCEEEEEEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEE
Confidence 4567777778889999999998653367999999999999999999999999999999998888887654322 2 34
Q ss_pred EEEEEEEEcCCCC--CCCCCceeEEEecCCCCCCC--CCCCcHHHHHHHHHHHHHhhcc
Q 023914 215 YIIFLAKLKRPHF--SPGPESSECRLFALDEIPFD--SLAFSSISVTLQLVRFYFEHMT 269 (275)
Q Consensus 215 ~~~f~a~~~~~e~--~~~~E~~d~~W~~~deL~~~--~l~~~s~~~al~li~~~l~~~~ 269 (275)
+++|.+....+.. ..++|..+++|+++++++.. ....+....++. +|++...
T Consensus 86 ~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~---~~~~~~~ 141 (153)
T 2b0v_A 86 RFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIE---DYHAGKR 141 (153)
T ss_dssp EEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHH---HHHTTCC
T ss_pred EEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHH---HHHhCCC
Confidence 4678887765432 33578899999999998853 233455554444 8887653
No 16
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.83 E-value=2.2e-19 Score=148.15 Aligned_cols=113 Identities=24% Similarity=0.253 Sum_probs=86.8
Q ss_pred cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE-----------Ee-
Q 023914 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL-----------DI- 208 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~-----------~~- 208 (275)
..++.+++.++++|||++|+. .|.|.+|||++|+|||+++||+||++||||+++....+++.+ .+
T Consensus 6 ~~~v~~vi~~~~~vLL~~r~~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (159)
T 3f6a_A 6 HFTVSVFIVCKDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI 82 (159)
T ss_dssp CEEEEEEEEETTEEEEEECSS---SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred eEEEEEEEEECCEEEEEEcCC---CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence 456666676789999999873 689999999999999999999999999999999877766321 11
Q ss_pred -----------CCCCEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914 209 -----------PRIGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISV 256 (275)
Q Consensus 209 -----------~~~~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~ 256 (275)
+......++|.+....+++.. .+|..+++|+++++++...+.++....
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~ 142 (159)
T 3f6a_A 83 NPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILV 142 (159)
T ss_dssp CCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHH
T ss_pred CccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHH
Confidence 112245578999887777665 488999999999999965544444433
No 17
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.82 E-value=9.5e-20 Score=153.93 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=97.4
Q ss_pred ccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC----C
Q 023914 137 YQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI----G 212 (275)
Q Consensus 137 y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~----~ 212 (275)
.+++..++++++.++++|||++|...+..|.|.+|||++|+||++++||+||++||||+++....+++.+.+... .
T Consensus 21 m~~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 100 (176)
T 3q93_A 21 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL 100 (176)
T ss_dssp --CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred CCCCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence 345677788888899999999997766689999999999999999999999999999999999998887754332 3
Q ss_pred EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 213 QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 213 ~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
..+++|.+....+++.. .|..+++|+++++++...+. +..+..+. .++++.
T Consensus 101 ~~~~~f~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~~ 151 (176)
T 3q93_A 101 MDVHVFCTDSIQGTPVE-SDEMRPCWFQLDQIPFKDMW-PDDSYWFP---LLLQKK 151 (176)
T ss_dssp EEEEEEEESCEESCCCC-CSSEEEEEEETTCCCGGGBC-TTHHHHHH---HHHTTC
T ss_pred EEEEEEEEECCCCCcCC-CcceeeEEeeHHHccccccC-cchHHHHH---HHHcCC
Confidence 45677888765555443 45667899999999965554 34444444 666654
No 18
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.82 E-value=1.7e-20 Score=149.44 Aligned_cols=121 Identities=22% Similarity=0.351 Sum_probs=93.1
Q ss_pred cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC------CEE
Q 023914 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI------GQI 214 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~------~~~ 214 (275)
..++.+++.++++|||++|.. |.|.+|||++|+|||+++||.||++||||+++....+++...+.+. +..
T Consensus 4 ~~~~~~vi~~~~~vLl~~r~~----~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (134)
T 2pbt_A 4 EFSAGGVLFKDGEVLLIKTPS----NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT 79 (134)
T ss_dssp EEEEEEEEEETTEEEEEECTT----SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred ceEEEEEEEECCEEEEEEeCC----CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEEEE
Confidence 345666666788999999873 8999999999999999999999999999999988888876543222 245
Q ss_pred EEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 023914 215 YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMT 269 (275)
Q Consensus 215 ~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~ 269 (275)
+++|.+....++..+++|..+++|++++++... ..++..+.+++ .+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~---~~~~~~~ 130 (134)
T 2pbt_A 80 VKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKL-LKYKGDKEIFE---KALKLKE 130 (134)
T ss_dssp EEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHH-CCSHHHHHHHH---HHHHHHH
T ss_pred EEEEEEEecCCCcCCCcceeEEEEEcHHHHHhh-hcchhHHHHHH---HHHHHhh
Confidence 677888887766666669999999999999842 44566655555 5555433
No 19
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.82 E-value=4.9e-21 Score=157.85 Aligned_cols=138 Identities=22% Similarity=0.272 Sum_probs=99.2
Q ss_pred cCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe
Q 023914 129 CTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI 208 (275)
Q Consensus 129 C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~ 208 (275)
+.+||.+.|.+.... .+-+++.++||++|+.. +|.|.+|||++|+|||+++||+||++||||+++.....+..+..
T Consensus 3 ~ra~G~iifr~~~~~--~~~n~~~e~LL~~r~~~--~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~ 78 (155)
T 3u53_A 3 LRACGLIIFRRCLIP--KVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKR 78 (155)
T ss_dssp -CEEEEEEEEECCCS--SSSSCSEEEEEEEESSS--SCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEE
T ss_pred ceEeEEEEEcccccc--ceeCCCcEEEEEEecCC--CCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEee
Confidence 446777777542111 11244568999998754 47899999999999999999999999999999987776654321
Q ss_pred ------CCCCEEEEEEEEEEcCCC--CCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcccc
Q 023914 209 ------PRIGQIYIIFLAKLKRPH--FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLI 271 (275)
Q Consensus 209 ------~~~~~~~~~f~a~~~~~e--~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~~i 271 (275)
.........|.+.....+ +..++|..+++|++++|+.. .+.++..+.+++-..+|+....++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~-~~~~~~~~~~L~~a~~~L~~~~al 148 (155)
T 3u53_A 79 ELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQ-LAQFKEMKAALQEGHQFLCSIEAL 148 (155)
T ss_dssp EEEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHH-HHCSHHHHHHHHHHHHHHHHHHC-
T ss_pred eeecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHH-HcCCHHHHHHHHHHHHHHhCchhh
Confidence 222344456677766543 45568999999999999764 345788888888788888877655
No 20
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.81 E-value=1.5e-19 Score=159.28 Aligned_cols=121 Identities=19% Similarity=0.298 Sum_probs=97.0
Q ss_pred CccccCCcEEEEEEEee----CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC
Q 023914 134 KIAYQNPKMVVGCLIEH----DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP 209 (275)
Q Consensus 134 ~~~y~~p~~~V~viI~~----~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~ 209 (275)
...|++|.++|.++|.. +++|||++|...+..|.|++|||++|+|||+++||+||++||||+++...+.++.+..+
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~ 85 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI 85 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence 45678888888877752 46999999988777899999999999999999999999999999999888888887644
Q ss_pred C----CCEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914 210 R----IGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISV 256 (275)
Q Consensus 210 ~----~~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~ 256 (275)
. .+.+.++|.+.+..++... ++|..+++|+++++++ .+.+++..+
T Consensus 86 ~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~--~l~~dh~~i 135 (226)
T 2fb1_A 86 DRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELP--ALIFDHPEM 135 (226)
T ss_dssp TSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCC--CBSTTHHHH
T ss_pred CcCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhh--hccCCHHHH
Confidence 3 2456678888876654432 3678899999999998 567776433
No 21
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.81 E-value=7.8e-20 Score=150.02 Aligned_cols=121 Identities=15% Similarity=0.224 Sum_probs=92.2
Q ss_pred CCcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc--ccceeeEEEEe--CCC--
Q 023914 139 NPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV--EVQSPFAQLDI--PRI-- 211 (275)
Q Consensus 139 ~p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v--~~~~~~~~~~~--~~~-- 211 (275)
+|.++|.+++.+ +++|||++|...+..|.|++|||++|+||++++||+||++||||+++ ....+++.... +..
T Consensus 16 ~~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
T 1rya_A 16 TPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS 95 (160)
T ss_dssp SCEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred CcEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEccccc
Confidence 455666666654 78999999987666799999999999999999999999999999996 46677776543 221
Q ss_pred ------CEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 212 ------GQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 212 ------~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
+..+++|.+....+++.. .+|..+++|+++++++...+.++..+.+++
T Consensus 96 ~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~ 150 (160)
T 1rya_A 96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFL 150 (160)
T ss_dssp BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGC
T ss_pred CCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHHH
Confidence 456678888876655544 478899999999999865555555555444
No 22
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.81 E-value=7e-19 Score=147.44 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=84.4
Q ss_pred CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEE
Q 023914 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFL 219 (275)
Q Consensus 140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~ 219 (275)
...++++++.+++++||++|+ .|.|.+|||++|+|||+++||+||++||||+++....+++.+..+. ..+++|.
T Consensus 15 ~~~~~~~ii~~~~~vLL~~r~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~f~ 88 (163)
T 3f13_A 15 LARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF--NAHKVYL 88 (163)
T ss_dssp CEEEEEEECEETTEEEEEECC-------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS--EEEEEEE
T ss_pred ceEEEEEEEEeCCEEEEEEEC----CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC--eEEEEEE
Confidence 345566677889999999986 5899999999999999999999999999999999888888876654 7777888
Q ss_pred EEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
+.. .+++.+++|..+++||+.++.+ ..+. +....++.
T Consensus 89 ~~~-~~~~~~~~E~~~~~W~~~~~~~-~~l~-~~~~~il~ 125 (163)
T 3f13_A 89 CIA-QGQPKPQNEIERIALVSSPDTD-MDLF-VEGRAILR 125 (163)
T ss_dssp EEC--CCCCCCTTCCEEEEESSTTCS-SCBC-HHHHHHHH
T ss_pred EEE-CCcCccCCCceEEEEECccccc-CCCC-HHHHHHHH
Confidence 875 4666666799999999954443 2333 34444444
No 23
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.80 E-value=1.6e-19 Score=148.52 Aligned_cols=109 Identities=27% Similarity=0.454 Sum_probs=79.8
Q ss_pred EEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-------eCCCCE
Q 023914 142 MVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-------IPRIGQ 213 (275)
Q Consensus 142 ~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-------~~~~~~ 213 (275)
+++++++ +.+++|||++|. .|.|.+|||++|+||++++||+||++||||+++....+++.+. ++....
T Consensus 22 ~~v~~ii~~~~~~vLL~~r~----~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (153)
T 3eds_A 22 PSVAAVIKNEQGEILFQYPG----GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNGDE 97 (153)
T ss_dssp EEEEEEEBCTTCCEEEECC-------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTSCE
T ss_pred eeEEEEEEcCCCeEEEEEcC----CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeecCCCCe
Confidence 3444444 557899998887 6899999999999999999999999999999998888887652 233332
Q ss_pred ---EEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHH
Q 023914 214 ---IYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSI 254 (275)
Q Consensus 214 ---~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~ 254 (275)
.+++|.+....+++.. ++|..+++|+++++++...+++|..
T Consensus 98 ~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~p~~ 142 (153)
T 3eds_A 98 VEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALPYPDK 142 (153)
T ss_dssp EEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSCCCGG
T ss_pred EEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCchhcccCccc
Confidence 5678888887766555 4788899999999999766666653
No 24
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.80 E-value=5.6e-19 Score=146.38 Aligned_cols=117 Identities=25% Similarity=0.259 Sum_probs=84.9
Q ss_pred cEEEEEEEeeCCeEEEEEeccC--CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE--------EEeCC
Q 023914 141 KMVVGCLIEHDKKILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ--------LDIPR 210 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~--p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~--------~~~~~ 210 (275)
..++++++.++++|||++|... +.+|.|++|||++|+||++++||+||++||||+++....++.. ..++.
T Consensus 28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 107 (165)
T 3oga_A 28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYAD 107 (165)
T ss_dssp EEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCC
Confidence 4566667788999999998854 2469999999999999999999999999999999876665432 23333
Q ss_pred CC-----EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHH
Q 023914 211 IG-----QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTL 258 (275)
Q Consensus 211 ~~-----~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al 258 (275)
.. ..+++|.+....+.+..++|..+++|+++++++...+ .+..+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-~~~~~~~l 159 (165)
T 3oga_A 108 GRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDL-NVATRHTL 159 (165)
T ss_dssp CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCB-CHHHHHHH
T ss_pred CCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhhCCC-CHHHHHHH
Confidence 32 2345677777766666678999999999999985433 24444333
No 25
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.80 E-value=1.5e-19 Score=160.86 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=97.1
Q ss_pred ecCCCCCccccCCcEEEEEEEe--eC--CeEEEEEeccCCCCCceeeeeEEeeC--CCCHHHHHHHHHHHHhCCccccce
Q 023914 128 ICTVCGKIAYQNPKMVVGCLIE--HD--KKILLCKRKIEPSYGLWTLPAGYMEI--GESAAEGAIRETWEEARADVEVQS 201 (275)
Q Consensus 128 ~C~~Cg~~~y~~p~~~V~viI~--~~--~~iLL~rr~~~p~~g~w~lPgG~vE~--GEs~eeAa~REl~EEtGl~v~~~~ 201 (275)
....++...|++|.++|.++|. ++ ++|||++|...+..|.|.+|||++|+ |||+++||+||++||||+++..+.
T Consensus 9 ~l~~~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~ 88 (240)
T 3gz5_A 9 YLANYDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIE 88 (240)
T ss_dssp ------------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEE
T ss_pred HHhhcCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCcee
Confidence 3445666788999888877775 33 49999999977778999999999999 999999999999999999998888
Q ss_pred eeEEEEeCC----CCEEEEEEEEEEcCCCCC-CCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 202 PFAQLDIPR----IGQIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 202 ~~~~~~~~~----~~~~~~~f~a~~~~~e~~-~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
.++.+..+. .+.+.++|.+.+..+... ..+|..+++|+++++++...+++++..+...
T Consensus 89 ~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~ 151 (240)
T 3gz5_A 89 QLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ 151 (240)
T ss_dssp EEEEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHH
T ss_pred eEEEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHH
Confidence 888877643 356778888887654433 2378889999999999877788887554333
No 26
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.80 E-value=1.6e-19 Score=153.58 Aligned_cols=120 Identities=28% Similarity=0.385 Sum_probs=90.0
Q ss_pred ccccCCc-EEEEEEEee--------CCeEEEEEecc-------CCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccc
Q 023914 135 IAYQNPK-MVVGCLIEH--------DKKILLCKRKI-------EPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198 (275)
Q Consensus 135 ~~y~~p~-~~V~viI~~--------~~~iLL~rr~~-------~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~ 198 (275)
..|++|. ++|.+++.. +++|||++|.. .+..|.|.+|||++|+|||+++||+||++||||+++.
T Consensus 20 ~~~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~ 99 (187)
T 3i9x_A 20 KEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDI 99 (187)
T ss_dssp ---CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSC
T ss_pred hHcCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 5678888 766655532 46899999943 3468999999999999999999999999999999999
Q ss_pred cceeeEEEEeCCC----CEEEEEEEEEEcCCC---CCCCCCceeEEEecCCCCCCCCCCCcHH
Q 023914 199 VQSPFAQLDIPRI----GQIYIIFLAKLKRPH---FSPGPESSECRLFALDEIPFDSLAFSSI 254 (275)
Q Consensus 199 ~~~~~~~~~~~~~----~~~~~~f~a~~~~~e---~~~~~E~~d~~W~~~deL~~~~l~~~s~ 254 (275)
...+++.+..+.. ....++|.+...... ....+|..+++|+++++++...+.++..
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~ 162 (187)
T 3i9x_A 100 PLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHL 162 (187)
T ss_dssp CCEEEEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHH
T ss_pred ceEEEEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHH
Confidence 9999988765442 355566666654332 2335788899999999999766665543
No 27
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.80 E-value=6.3e-19 Score=143.10 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=91.3
Q ss_pred CcEEEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEEEE
Q 023914 140 PKMVVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQIYI 216 (275)
Q Consensus 140 p~~~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~~~ 216 (275)
+..++++++.++++|||++|... +.+|.|++|||++|+||++++||.||++||||+++....+++...+. .....++
T Consensus 21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 100 (153)
T 3ees_A 21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILIL 100 (153)
T ss_dssp EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEEE
Confidence 44666777788899999999865 35799999999999999999999999999999999888888765543 3345567
Q ss_pred EEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 217 IFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 217 ~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
+|.+....+++ ..+|..+++|++++++....+. +..+.+++
T Consensus 101 ~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~-~~~~~~l~ 141 (153)
T 3ees_A 101 FYEILYWKGEP-RAKHHMMLEWIHPEELKHRNIP-EANRKILH 141 (153)
T ss_dssp EEEECEEESCC-CCSSSSEEEEECGGGGGGSCCC-HHHHTTHH
T ss_pred EEEEEECCCCc-CCCccceEEEecHHHhhhCCCC-cchHHHHH
Confidence 78887766543 2477889999999999954332 44444444
No 28
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.79 E-value=2.3e-19 Score=141.58 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=86.8
Q ss_pred EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEEEEEEEE
Q 023914 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIYIIFLAK 221 (275)
Q Consensus 144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~~~f~a~ 221 (275)
.++++++++++||++|+. |.|++|||++|+|||+++||+||++||||+++....+++...+.+ .+..+.+|.+.
T Consensus 6 ~~vi~~~~~~vLl~~r~~----g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
T 1vcd_A 6 GGVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM 81 (126)
T ss_dssp EEEEECTTSCEEEEECTT----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEECC----CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEEEEEE
Confidence 334445578999999873 789999999999999999999999999999998888888765543 34566778887
Q ss_pred EcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 222 LKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 222 ~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
...++...++|..+++|++++++... +.++..+.+++
T Consensus 82 ~~~~~~~~~~e~~~~~w~~~~el~~~-~~~~~~~~~l~ 118 (126)
T 1vcd_A 82 RGEGAPRLEEGMTGAGWFSPEEARAL-LAFPEDLGLLE 118 (126)
T ss_dssp EEESCCCCCTTCCEEEEECHHHHHHH-BCSHHHHHHHH
T ss_pred EcCCCCCCCcceeeeEEcCHHHHHHh-hcChhHHHHHH
Confidence 76655445578889999999998742 44566665555
No 29
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.79 E-value=4.6e-19 Score=141.95 Aligned_cols=113 Identities=23% Similarity=0.264 Sum_probs=83.8
Q ss_pred CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceee----EEEEe--CCCCEEEEEEEEEEcC
Q 023914 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF----AQLDI--PRIGQIYIIFLAKLKR 224 (275)
Q Consensus 151 ~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~----~~~~~--~~~~~~~~~f~a~~~~ 224 (275)
+++|||++|+. .+|.|.+|||++|+|||+++||+||++||||+.+..+..+ +...+ +..+..+++|.+....
T Consensus 17 ~~~vLl~~r~~--~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 94 (138)
T 1ktg_A 17 KIEFLLLQASY--PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNN 94 (138)
T ss_dssp EEEEEEEEESS--TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred CcEEEEEEccC--CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCceEEEEEEEEecC
Confidence 36899999873 3579999999999999999999999999999976555443 33333 3334566788888876
Q ss_pred C-CCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914 225 P-HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 225 ~-e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~ 266 (275)
+ ....++|..+++|+++++++.. ..++..+.+++.+.++++
T Consensus 95 ~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~~~~~~l~ 136 (138)
T 1ktg_A 95 PDDVQLSHEHQNWKWCELEDAIKI-ADYAEMGSLLRKFSAFLA 136 (138)
T ss_dssp CCCCCCCTTEEEEEEECHHHHHHH-HCCHHHHHHHHHHHHHHH
T ss_pred CcccCCCchhcEeEeccHHHHHHh-hccchHHHHHHHHHHHhh
Confidence 3 3444588899999999999852 345666666665555553
No 30
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.79 E-value=1.9e-19 Score=146.85 Aligned_cols=130 Identities=21% Similarity=0.169 Sum_probs=87.8
Q ss_pred CcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe-CC-CCEEEE
Q 023914 140 PKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-PR-IGQIYI 216 (275)
Q Consensus 140 p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-~~-~~~~~~ 216 (275)
+..+++++++.++++||+++.+.+ .++.|++|||++|+|||+++||+||++||||+++..+.+++.+.. +. .+..++
T Consensus 5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 84 (145)
T 2w4e_A 5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFY 84 (145)
T ss_dssp CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEEE
T ss_pred CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceEE
Confidence 444555556678899998876544 356899999999999999999999999999999987777665422 21 234566
Q ss_pred EEEEEE-cCCCCCC-CCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHhhcc
Q 023914 217 IFLAKL-KRPHFSP-GPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFEHMT 269 (275)
Q Consensus 217 ~f~a~~-~~~e~~~-~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~~~~ 269 (275)
+|.+.. ..+.... ++|..+++|++++++.. ..+.......++.+...|++.+.
T Consensus 85 ~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 143 (145)
T 2w4e_A 85 PLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARGELTRRG 143 (145)
T ss_dssp EEEEEEEEEC--------CEEEEEEEHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcCCcCcHHHHHHHHHHHHHhhhhc
Confidence 777763 3233333 47888999999999864 23433344455666667777654
No 31
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.79 E-value=3.6e-19 Score=147.71 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=94.5
Q ss_pred cCCcEEEEEEEeeCC--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--C--
Q 023914 138 QNPKMVVGCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--I-- 211 (275)
Q Consensus 138 ~~p~~~V~viI~~~~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~-- 211 (275)
..+..++.+++.+++ +|||++|...+..|.|++|||++|+|||+++||+||++||||+++...++++.+.+.. .
T Consensus 7 ~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 86 (161)
T 3exq_A 7 QPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQH 86 (161)
T ss_dssp CCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCSS
T ss_pred CCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCCe
Confidence 345567777776655 9999999866667889999999999999999999999999999999988888776543 2
Q ss_pred CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914 212 GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 212 ~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~ 266 (275)
...+++|.+....+++. .+|..+++|+++++++...+. +..+.+++ .+++
T Consensus 87 ~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~ 136 (161)
T 3exq_A 87 RKLGLLYRASNFTGTLK-ASAEGQLSWLPITALTRENSA-ASLPEFLQ---VFTG 136 (161)
T ss_dssp EEEEEEEEECCEESCCC-GGGTTTEEEECGGGCCTTTBC-TTHHHHHH---HHTT
T ss_pred EEEEEEEEEeccCCccC-CCccceEEEeeHHHhhhCccC-hHHHHHHH---HHhh
Confidence 35556777776555543 356678999999999965544 44444444 6655
No 32
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.79 E-value=3.1e-19 Score=152.60 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=92.5
Q ss_pred cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CC-----E
Q 023914 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IG-----Q 213 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~-----~ 213 (275)
..++++++.++++|||++|. ..|.|.+|||++|+||++++||+||++||||+++...++++.+.+.. .. .
T Consensus 4 ~~v~~~vi~~~~~vLL~~r~---~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T 3fk9_A 4 QRVTNCIVVDHDQVLLLQKP---RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEW 80 (188)
T ss_dssp CEEEEEEEEETTEEEEEECT---TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEECCEEEEEEeC---CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEE
Confidence 45667777788999999986 47899999999999999999999999999999999888877765432 11 2
Q ss_pred EEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 214 ~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
.+++|.+....+++....|..+++|+++++++...+. +..+..+. .+++..
T Consensus 81 ~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el~~~~l~-~~~~~~l~---~~l~~~ 131 (188)
T 3fk9_A 81 MLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMA-AGDKWIFK---HVLHSD 131 (188)
T ss_dssp EEEEEEESCEESCCCSEETTEEEEEEEGGGGGGSCCC-HHHHHHHH---HHTTCC
T ss_pred EEEEEEEECCCCCCcCCCCCEeEEEEEHHHhhhCCCC-HHHHHHHH---HHHcCC
Confidence 5677888766666555555578999999999865543 44444444 666653
No 33
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.79 E-value=4.2e-19 Score=145.31 Aligned_cols=126 Identities=22% Similarity=0.214 Sum_probs=92.2
Q ss_pred ccCCcEEEEEEEeeCCe----EEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--
Q 023914 137 YQNPKMVVGCLIEHDKK----ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR-- 210 (275)
Q Consensus 137 y~~p~~~V~viI~~~~~----iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~-- 210 (275)
++.+..++++++.++++ +||++|...+..| |.+|||++|+|||+++||+||++||||+++....+++...+..
T Consensus 4 ~~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 82 (155)
T 2b06_A 4 SQLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT 82 (155)
T ss_dssp GGCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred CcCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence 45567778888888888 9999988665456 9999999999999999999999999999999888888766543
Q ss_pred -CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 211 -IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 211 -~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
.+..+++|.+....+++.. .|..+++|+++++++...+. +..+.+++ .+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~~ 136 (155)
T 2b06_A 83 GGRYIVICYKATEFSGTLQS-SEEGEVSWVQKDQIPNLNLA-YDMLPLME---MMEAPD 136 (155)
T ss_dssp SCEEEEEEEEECEEEECCCC-BTTBEEEEEEGGGGGGSCBC-TTHHHHHH---HHHCTT
T ss_pred CceEEEEEEEEEecCCCCCC-CcceeeEEeeHHHhhhCCCC-hhHHHHHH---HHhCCC
Confidence 3456677877765554433 67789999999999965544 33444333 666543
No 34
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.78 E-value=9.4e-19 Score=141.09 Aligned_cols=114 Identities=19% Similarity=0.285 Sum_probs=84.8
Q ss_pred EEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee--eEEEE--eCCCCEEEEEE
Q 023914 144 VGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP--FAQLD--IPRIGQIYIIF 218 (275)
Q Consensus 144 V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~--~~~~~--~~~~~~~~~~f 218 (275)
++++++++++|||++|... +.+|.|++|||++|.||++++||+||++||||+.+....+ +.... ++..+..+++|
T Consensus 12 ~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (144)
T 3r03_A 12 AAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLMPLY 91 (144)
T ss_dssp EEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEEEEEE
Confidence 3444456789999999854 3579999999999999999999999999999999877643 33233 34445667788
Q ss_pred EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
.+....+++. .+|..+++|+++++++...+. +..+..++
T Consensus 92 ~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~ 130 (144)
T 3r03_A 92 ACRSWRGRAT-AREGQTLAWVRAERLREYPMP-PADLPLIP 130 (144)
T ss_dssp EECCCBSCCC-CCSSCEEEEECGGGGGGSCCC-TTTTTHHH
T ss_pred EEEecCCccC-CCCcceEEEEeHHHhccCCCC-cchHHHHH
Confidence 8877665433 467889999999999965443 44444444
No 35
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.78 E-value=1.8e-18 Score=138.56 Aligned_cols=123 Identities=23% Similarity=0.198 Sum_probs=91.3
Q ss_pred cEEEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEE
Q 023914 141 KMVVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYII 217 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~ 217 (275)
..++++++.++++|||++|... ..+|.|++|||++|+||++++||+||++||||+.+....+++.+.+.+. +..+++
T Consensus 9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 2rrk_A 9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHA 88 (140)
T ss_dssp EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEE
Confidence 3455566678899999999654 3479999999999999999999999999999999988888887654433 345567
Q ss_pred EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
|.+....+++. .+|..+++|++++++....+. +....+++ .+++.+
T Consensus 89 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~r 134 (140)
T 2rrk_A 89 WHVPDFHGTLQ-AHEHQALVWCSPEEALQYPLA-PADIPLLE---AFMALR 134 (140)
T ss_dssp EEESEEEECCC-CSSCSCEEEECHHHHTTSCCC-TTHHHHHH---HHHHHH
T ss_pred EEEEeeCCCcC-CCccceeEEeCHHHHhhCCCC-hhHHHHHH---HHHHHh
Confidence 77766544332 367788999999999864443 34444444 666553
No 36
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.78 E-value=1e-18 Score=141.13 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=89.7
Q ss_pred cccCCcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEE-----
Q 023914 136 AYQNPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLD----- 207 (275)
Q Consensus 136 ~y~~p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~----- 207 (275)
.|+++..+.+++++. ++++||++|... +|.|.+|||++|+||++++||+||++||||+++... .+++...
T Consensus 5 ~~~~~~~v~~~i~~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 82 (150)
T 2o1c_A 5 VYKRPVSILVVIYAQDTKRVLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFE 82 (150)
T ss_dssp CCBCSEEEEEEEEETTTCEEEEEECSSS--TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEE
T ss_pred cccCceEEEEEEEeCCCCEEEEEEecCC--CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeee
Confidence 466665555555555 489999998754 589999999999999999999999999999998763 3444321
Q ss_pred --------eC--CCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914 208 --------IP--RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 208 --------~~--~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~ 266 (275)
++ ..+..+++|.+....+.....+|..+++|++++++.... .++..+.+++ .+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~-~~~~~~~~l~---~~~~ 147 (150)
T 2o1c_A 83 IFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALT-KSWSNRQAIE---QFVI 147 (150)
T ss_dssp CCGGGGGGBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHC-SCHHHHHHHH---HHTT
T ss_pred eecccccccCCCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhhh-cCHHHHHHHH---HHHH
Confidence 12 123667788888876554344788999999999998432 3445555444 6654
No 37
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.78 E-value=9.8e-19 Score=142.37 Aligned_cols=115 Identities=22% Similarity=0.164 Sum_probs=87.0
Q ss_pred eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEE-----EeC--C-CCEEEEEEE
Q 023914 150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQL-----DIP--R-IGQIYIIFL 219 (275)
Q Consensus 150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~-----~~~--~-~~~~~~~f~ 219 (275)
.+++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++... .+.... .+. . .....++|.
T Consensus 18 ~~~~vLl~~r~~---~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 94 (149)
T 3son_A 18 ANYQFGVLHRTD---ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFA 94 (149)
T ss_dssp SSEEEEEEEESS---SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEE
T ss_pred CCeEEEEEEEcC---CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEE
Confidence 457899999984 489999999999999999999999999999998764 222211 122 1 234567889
Q ss_pred EEEc--CCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 220 AKLK--RPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 220 a~~~--~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
+... .+++.+++|..+++|++++++... ..++..+.++..+.++++.+
T Consensus 95 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-~~~~~~~~~l~~~~~~l~~~ 144 (149)
T 3son_A 95 IDLTSCSYQVTLSLEHSELRWVSYESAIQL-LEWDSNKTALYELNERLKNN 144 (149)
T ss_dssp EECTTTGGGCCCCTTEEEEEEECHHHHHHH-CCCHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCcccCCCceeeEEEeCHHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence 9887 445666689999999999998853 34677778787676776654
No 38
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.78 E-value=4.8e-18 Score=153.76 Aligned_cols=132 Identities=23% Similarity=0.395 Sum_probs=100.7
Q ss_pred ecCCCCCccccCCcEEEEEEEe--eC----CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccc--
Q 023914 128 ICTVCGKIAYQNPKMVVGCLIE--HD----KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV-- 199 (275)
Q Consensus 128 ~C~~Cg~~~y~~p~~~V~viI~--~~----~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~-- 199 (275)
.+..|....|++|.++|.++|. ++ ++|||++|...|..|.|.+|||++|+|||+++||+||++||||+++..
T Consensus 26 ~~~~~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~ 105 (273)
T 2fml_A 26 WYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQEN 105 (273)
T ss_dssp HHTTSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGG
T ss_pred hhhhhhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCc
Confidence 3456777789999988877764 23 389999999877789999999999999999999999999999987654
Q ss_pred ceeeEEEEeCC----CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCC-----------------------CCCCCCCCc
Q 023914 200 QSPFAQLDIPR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDE-----------------------IPFDSLAFS 252 (275)
Q Consensus 200 ~~~~~~~~~~~----~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~de-----------------------L~~~~l~~~ 252 (275)
+..++.+..+. .+...++|.+.+..+....++|..+++|+++++ ++...++|+
T Consensus 106 l~~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Lafd 185 (273)
T 2fml_A 106 IEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFD 185 (273)
T ss_dssp EEEEEEECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTT
T ss_pred EEEEEEEcCCCCCCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCccccc
Confidence 44455554333 246778898887665544558889999999996 333467888
Q ss_pred HHHHHHH
Q 023914 253 SISVTLQ 259 (275)
Q Consensus 253 s~~~al~ 259 (275)
+..+...
T Consensus 186 H~~Il~~ 192 (273)
T 2fml_A 186 HSEIIIK 192 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765444
No 39
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.77 E-value=4.2e-18 Score=139.47 Aligned_cols=108 Identities=23% Similarity=0.341 Sum_probs=85.9
Q ss_pred CCcEEEEEEEe-eCCeEEEEEeccC----CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CC-
Q 023914 139 NPKMVVGCLIE-HDKKILLCKRKIE----PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PR- 210 (275)
Q Consensus 139 ~p~~~V~viI~-~~~~iLL~rr~~~----p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~- 210 (275)
....++.+++. +++++||++|... ...|.|++|||++|+||++++||+||++||||+++....+++.+.. +.
T Consensus 11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~ 90 (159)
T 1sjy_A 11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG 90 (159)
T ss_dssp CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence 33455555554 5789999999852 2468999999999999999999999999999999998888887764 33
Q ss_pred CCEEEEEEEEEEcCCC-CCC--CCCceeEEEecCCCCCC
Q 023914 211 IGQIYIIFLAKLKRPH-FSP--GPESSECRLFALDEIPF 246 (275)
Q Consensus 211 ~~~~~~~f~a~~~~~e-~~~--~~E~~d~~W~~~deL~~ 246 (275)
.+..+++|.+....++ +.. ++|..+++|++++++..
T Consensus 91 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 129 (159)
T 1sjy_A 91 VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQ 129 (159)
T ss_dssp CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHH
T ss_pred ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHH
Confidence 3456778888887665 554 47889999999999863
No 40
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.77 E-value=2.6e-18 Score=141.36 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=85.3
Q ss_pred EEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee--eEEEE--eCCCCEEEEE
Q 023914 143 VVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP--FAQLD--IPRIGQIYII 217 (275)
Q Consensus 143 ~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~--~~~~~--~~~~~~~~~~ 217 (275)
+++++++++++|||++|... +.+|.|++|||++|+||++++||+||++||||+.+....+ ++... ++..+..+++
T Consensus 32 ~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (158)
T 3hhj_A 32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPL 111 (158)
T ss_dssp EEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEEEEE
Confidence 34445566889999999853 3579999999999999999999999999999999987654 44333 3444566677
Q ss_pred EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
|.+....+.+. .+|..+++|++++++....+ ++..+.+++
T Consensus 112 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~-~~~~~~il~ 151 (158)
T 3hhj_A 112 YFCSHYKGVAQ-GREGQNLKWIFINDLDKYPM-PEADKPLVQ 151 (158)
T ss_dssp EEESCCBSCCC-CTTSCEEEEEEGGGGGGSCC-CTTTHHHHH
T ss_pred EEEEECCCccC-CccccceEEEcHHHHhhCCC-CcchHHHHH
Confidence 88776655433 37788999999999986544 344444444
No 41
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.76 E-value=1e-18 Score=143.02 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=88.4
Q ss_pred cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCC----EE
Q 023914 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG----QI 214 (275)
Q Consensus 141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~----~~ 214 (275)
..++.+++.++++|||++| .|.|.+|||++|+||++++||+||++||||+++...++++.... +..+ ..
T Consensus 19 ~~~~~~ii~~~~~vLl~~r-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (154)
T 2pqv_A 19 GVRATALIVQNHKLLVTKD-----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNI 93 (154)
T ss_dssp EEEEEECCEETTEEEEEEE-----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEECCEEEEEec-----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEE
Confidence 3456666677899999998 47899999999999999999999999999999988777665442 2222 34
Q ss_pred EEEEEEEEcCCCCC---CCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914 215 YIIFLAKLKRPHFS---PGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH 267 (275)
Q Consensus 215 ~~~f~a~~~~~e~~---~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~ 267 (275)
.++|.+....+... .++|..+++|+++++++...+.++..+..+. .|.+.
T Consensus 94 ~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~---~~~~~ 146 (154)
T 2pqv_A 94 EFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALP---DWEGQ 146 (154)
T ss_dssp EEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEESTTHHHHTT---TCCSS
T ss_pred EEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcHHHHHHhh---hhhhC
Confidence 45788887665432 3467889999999999976555555544333 55544
No 42
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.76 E-value=8.2e-19 Score=147.98 Aligned_cols=131 Identities=21% Similarity=0.207 Sum_probs=95.7
Q ss_pred CCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEE
Q 023914 139 NPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIY 215 (275)
Q Consensus 139 ~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~ 215 (275)
++..++++++++++++||++|...+ .+|.|++|||++|+|||+++||+||++||||+++..+.+++.+.... .+..+
T Consensus 40 ~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 119 (182)
T 2yvp_A 40 PVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVF 119 (182)
T ss_dssp SCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEE
T ss_pred cCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEE
Confidence 4445555555678999999987654 36899999999999999999999999999999998888777653322 23566
Q ss_pred EEEEEEEcC--CCCC-CCCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHhhcc
Q 023914 216 IIFLAKLKR--PHFS-PGPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFEHMT 269 (275)
Q Consensus 216 ~~f~a~~~~--~e~~-~~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~~~~ 269 (275)
++|.+.... +++. ..+|..+++|++++++.. ..+.......++.+++.|+++++
T Consensus 120 ~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 180 (182)
T 2yvp_A 120 HPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLG 180 (182)
T ss_dssp EEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcCCcCChHHHHHHHHHHHHHHHhc
Confidence 777776432 3333 347889999999999763 34444445566677777777654
No 43
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.76 E-value=8.8e-19 Score=138.30 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=83.2
Q ss_pred EEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEEE
Q 023914 143 VVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFL 219 (275)
Q Consensus 143 ~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f~ 219 (275)
++++++++++++||++|... +.+|.|++|||++|+||++++||.||++||||+.+....+++...+.+.+ ..+++|.
T Consensus 7 ~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 1mut_A 7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL 86 (129)
T ss_dssp CCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEE
T ss_pred EEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEE
Confidence 44555678899999998865 35799999999999999999999999999999999877777665544433 3456788
Q ss_pred EEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914 220 AKLKRPHFSPGPESSECRLFALDEIPFDSL 249 (275)
Q Consensus 220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l 249 (275)
+....+.+. .+|..+++|++++++....+
T Consensus 87 ~~~~~~~~~-~~e~~~~~W~~~~el~~~~~ 115 (129)
T 1mut_A 87 VERWEGEPW-GKEGQPGEWMSLVGLNADDF 115 (129)
T ss_dssp EEECSSCCC-CCSSCCCEEEESSSCCTTTS
T ss_pred EEccCCccC-CcccceeEEeCHHHcccccC
Confidence 887655432 46778899999999996443
No 44
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.75 E-value=1.9e-18 Score=139.76 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=84.8
Q ss_pred EEEEEEE-ee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE---eC-CC----
Q 023914 142 MVVGCLI-EH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD---IP-RI---- 211 (275)
Q Consensus 142 ~~V~viI-~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~---~~-~~---- 211 (275)
..+.+++ ++ +++|||++|. .|.|++|||++|+||++++||+||++||||+++....+++.+. ++ ..
T Consensus 19 ~~~~~vi~~~~~~~vLl~~r~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 94 (148)
T 2azw_A 19 YAAYIIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAY 94 (148)
T ss_dssp CEEEEECEEGGGTEEEEEECT----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEE
T ss_pred eEEEEEEECCCCCeEEEEEcC----CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCcce
Confidence 3444444 44 5899999974 4899999999999999999999999999999998888777643 22 11
Q ss_pred CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914 212 GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 212 ~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~ 266 (275)
+..+++|.+....+.....+|..+++|+++++++.. +.++..+.+++ ++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~---~~~~ 145 (148)
T 2azw_A 95 YNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL-LKRGSHRWAVE---KWLA 145 (148)
T ss_dssp EEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHH-BSCHHHHHHHH---HHHH
T ss_pred EEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhh-hcchhHHHHHH---HHHH
Confidence 234567888876554445577889999999999842 33455555444 7764
No 45
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.75 E-value=1.2e-17 Score=144.06 Aligned_cols=133 Identities=20% Similarity=0.144 Sum_probs=92.4
Q ss_pred cCCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEE
Q 023914 138 QNPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQI 214 (275)
Q Consensus 138 ~~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~ 214 (275)
+++..+++++++++ +|||++|.+.+ .++.|++|||++|+||++++||+||++||||+++..+.+++.+... ..+..
T Consensus 47 ~~~~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 125 (198)
T 1vhz_A 47 TNREAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSK 125 (198)
T ss_dssp CCCCEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCE
T ss_pred CCCCEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcE
Confidence 34444444434444 99999987554 3678999999999999999999999999999999988888876532 22456
Q ss_pred EEEEEEEEcCC-CCCC-CCCceeEEEecCCCCCCC----CCCCcHHHHHHHHHHHHHhhcccc
Q 023914 215 YIIFLAKLKRP-HFSP-GPESSECRLFALDEIPFD----SLAFSSISVTLQLVRFYFEHMTLI 271 (275)
Q Consensus 215 ~~~f~a~~~~~-e~~~-~~E~~d~~W~~~deL~~~----~l~~~s~~~al~li~~~l~~~~~i 271 (275)
+++|.+....+ .... ++|..++.|+++++++.. .+.......++.+...+++.+.++
T Consensus 126 ~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~i~~~~~~~al~~~~~~~~~~~~~ 188 (198)
T 1vhz_A 126 MNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV 188 (198)
T ss_dssp EEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 67788775443 2333 478889999999998742 233333445555555666655443
No 46
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.75 E-value=6.6e-18 Score=141.81 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=89.0
Q ss_pred EEEEE-EeeCCeEEEEEeccCC--CCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEE
Q 023914 143 VVGCL-IEHDKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYI 216 (275)
Q Consensus 143 ~V~vi-I~~~~~iLL~rr~~~p--~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~ 216 (275)
++.++ ++.+++|||++|.... .+|.|++ |||++|+|||+++||+||++||||+++..+..++.+.+... +..++
T Consensus 39 ~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 118 (180)
T 2fkb_A 39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA 118 (180)
T ss_dssp EEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEEE
Confidence 44444 4567899999987543 3689999 99999999999999999999999999888888777654333 34566
Q ss_pred EEEEEEcCCCCCC-CCCceeEEEecCCCCCCC--CCCCcHHHHHHHHHHHHHhhccc
Q 023914 217 IFLAKLKRPHFSP-GPESSECRLFALDEIPFD--SLAFSSISVTLQLVRFYFEHMTL 270 (275)
Q Consensus 217 ~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~--~l~~~s~~~al~li~~~l~~~~~ 270 (275)
+|.+.. .+++.. .+|..+++|+++++++.. .+. +....++ ..|+..+..
T Consensus 119 ~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~-~~~~~~l---~~~~~~~~~ 170 (180)
T 2fkb_A 119 LFSCVS-HGPFALQEDEVSEVCWLTPEEITARCDEFT-PDSLKAL---ALWMKRNAK 170 (180)
T ss_dssp EEEEEC-CCCCCCCTTTEEEEEEECHHHHHTTGGGBC-HHHHHHH---HHHHHHC--
T ss_pred EEEEec-CCCcCCChhHhheEEEecHHHHHHHHHHhC-CcHHHHH---HHHHHhhcC
Confidence 787773 444444 478899999999999854 222 3444444 477766543
No 47
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.74 E-value=4.6e-18 Score=142.04 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=76.0
Q ss_pred EEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEEEEE
Q 023914 142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIYIIF 218 (275)
Q Consensus 142 ~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~~~f 218 (275)
.+|.+++.+++++||++|.+.+ .+|.|++|||++|+|||+++||+||++||||+ +..+.+++.+.... .+..+++|
T Consensus 35 ~~v~vii~~~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~~f 113 (170)
T 1v8y_A 35 PAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTHVF 113 (170)
T ss_dssp CEEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEEEE
T ss_pred CeEEEEEEECCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEEEE
Confidence 4454444449999999987654 47899999999999999999999999999999 88888887764322 23566678
Q ss_pred EEEEcC-CCCC-CCCCceeEEEecCCCCCC
Q 023914 219 LAKLKR-PHFS-PGPESSECRLFALDEIPF 246 (275)
Q Consensus 219 ~a~~~~-~e~~-~~~E~~d~~W~~~deL~~ 246 (275)
.+.... .... .++|..+++|++++++..
T Consensus 114 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 143 (170)
T 1v8y_A 114 LAENLKEVEAHPDEDEAIEVVWMRPEEALE 143 (170)
T ss_dssp EEEEEEECC--------CEEEEECHHHHHH
T ss_pred EEEeccccCCCCCCCceEEEEEEEHHHHHH
Confidence 777654 3333 247888999999999764
No 48
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.73 E-value=5.5e-18 Score=139.64 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=77.4
Q ss_pred EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE-----------------
Q 023914 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ----------------- 205 (275)
Q Consensus 143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~----------------- 205 (275)
++.+++.++++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++.....++.
T Consensus 3 ~~~~vi~~~~~vLL~~r~~---~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T 1k2e_A 3 VTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE 79 (156)
T ss_dssp EEEEECEETTEEEEEECTT---TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred EEEEEEEECCEEEEEEEcC---CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceeee
Confidence 4555666699999999873 68999999999999999999999999999999876655321
Q ss_pred --EEeCCCC--EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHH
Q 023914 206 --LDIPRIG--QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQL 260 (275)
Q Consensus 206 --~~~~~~~--~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~l 260 (275)
..++... ...++|.+...+ +|..+++|+++++++...+ ++..+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~f~~~~~~------~e~~~~~W~~~~el~~~~~-~~~~~~~l~~ 131 (156)
T 1k2e_A 80 EVVKYPEETHIHFDLIYLVKRVG------GDLKNGEWIDVREIDRIET-FPNVRKVVSL 131 (156)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEE------ECCCSCEEEEGGGGGGSCB-STTHHHHHHH
T ss_pred eeecCCCCceEEEEEEEEEEecC------CcEeeeEEeCHHHHhcCCC-ChHHHHHHHH
Confidence 1122211 223457666533 3567899999999986544 3555555553
No 49
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=141.89 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=76.6
Q ss_pred cccCCcEEEEEEEe--eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE---eCC
Q 023914 136 AYQNPKMVVGCLIE--HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD---IPR 210 (275)
Q Consensus 136 ~y~~p~~~V~viI~--~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~---~~~ 210 (275)
.++++.++|.+++. ++++|||++|+.. ..|.|.+|||++|+||++++||+||++||||+++....+++... .+.
T Consensus 21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~-~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~ 99 (199)
T 3h95_A 21 QSMSHQVGVAGAVFDESTRKILVVQDRNK-LKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPG 99 (199)
T ss_dssp -----CCEEEEEEEETTTTEEEEEEESSS-STTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC----
T ss_pred ccCcccceEEEEEEeCCCCEEEEEEEcCC-CCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCC
Confidence 34556666655443 3589999998753 47999999999999999999999999999999998777777432 222
Q ss_pred C-CEEEEEEEEEEcC--CCCCC-CCCceeEEEecCCCCCCCC
Q 023914 211 I-GQIYIIFLAKLKR--PHFSP-GPESSECRLFALDEIPFDS 248 (275)
Q Consensus 211 ~-~~~~~~f~a~~~~--~e~~~-~~E~~d~~W~~~deL~~~~ 248 (275)
. ....++|.+.+.. .+..+ .+|..+++|+++++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 141 (199)
T 3h95_A 100 AFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTE 141 (199)
T ss_dssp -----CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCS
T ss_pred CceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhh
Confidence 1 1223445555443 33343 4889999999999998543
No 50
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.72 E-value=3.3e-17 Score=140.42 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=78.5
Q ss_pred EEEEEEeeC-CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCc-cccce----eeEEEEeCC------
Q 023914 143 VVGCLIEHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD-VEVQS----PFAQLDIPR------ 210 (275)
Q Consensus 143 ~V~viI~~~-~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~-v~~~~----~~~~~~~~~------ 210 (275)
+.+++++.+ ++|||++|+ ..|.|.+|||++|+|||+++||+||++||||++ +.... .+.....+.
T Consensus 48 ~~~vv~~~~~~~vLL~~r~---~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (197)
T 3fcm_A 48 SSAFAVNKERNKFLMIHHN---IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGK 124 (197)
T ss_dssp EEEEEECTTSCEEEEEEET---TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTE
T ss_pred EEEEEEECCCCEEEEEEec---CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCc
Confidence 334444444 499999987 468999999999999999999999999999998 54321 122222211
Q ss_pred ----CCEEEEEEEEEEcCCC-CCCC-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914 211 ----IGQIYIIFLAKLKRPH-FSPG-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268 (275)
Q Consensus 211 ----~~~~~~~f~a~~~~~e-~~~~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~ 268 (275)
.....+.|.+....+. +..+ +|..+++|+++++++.. +..+....+++.+.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-~~~~~~~~il~~~~~~l~~~ 187 (197)
T 3fcm_A 125 YVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKY-CSEPHMIPIYEKLINKLKTQ 187 (197)
T ss_dssp EECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHH-CCCGGGHHHHHHHHHHHHC-
T ss_pred ccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhh-cCCHHHHHHHHHHHHHHHhc
Confidence 1123366777766544 4443 78899999999998853 34566666666454555543
No 51
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=134.13 Aligned_cols=127 Identities=23% Similarity=0.304 Sum_probs=83.5
Q ss_pred EEEEEE-eeC-CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE-EeCCCCEEEEEEE
Q 023914 143 VVGCLI-EHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL-DIPRIGQIYIIFL 219 (275)
Q Consensus 143 ~V~viI-~~~-~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~-~~~~~~~~~~~f~ 219 (275)
++++++ +++ ++|||++|. ..|.|.+|||++|+|||+++||+||++||||+++.....+..+ .....+..+.+|.
T Consensus 6 ~~~~~i~~~~~~~vLl~~r~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
T 2jvb_A 6 VRGAAIFNENLSKILLVQGT---ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFL 82 (146)
T ss_dssp CEEEEEBCTTSSEEEEECCS---SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEEc---CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccCCceEEEEE
Confidence 344444 443 899999976 3689999999999999999999999999999998754332221 2222334455555
Q ss_pred EEEcCC--C--CCCCCCceeEEEecCCCCCCCC----CCCcHHHHHHHHHHHHHhhccccc
Q 023914 220 AKLKRP--H--FSPGPESSECRLFALDEIPFDS----LAFSSISVTLQLVRFYFEHMTLIC 272 (275)
Q Consensus 220 a~~~~~--e--~~~~~E~~d~~W~~~deL~~~~----l~~~s~~~al~li~~~l~~~~~i~ 272 (275)
+..... . ...++|..+++|+++++++... +..--....+..+..|+..++++.
T Consensus 83 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 143 (146)
T 2jvb_A 83 ISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIK 143 (146)
T ss_dssp ECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccccCCcCCcchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHHHHHHHHhhCCC
Confidence 543221 2 2235788999999999987521 111122334556668888766543
No 52
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.70 E-value=1.6e-17 Score=138.31 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=79.8
Q ss_pred cEEEEEE-EeeCCeEEEEEeccCC--CCCcee-eeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEE-eCCC-C
Q 023914 141 KMVVGCL-IEHDKKILLCKRKIEP--SYGLWT-LPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLD-IPRI-G 212 (275)
Q Consensus 141 ~~~V~vi-I~~~~~iLL~rr~~~p--~~g~w~-lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~-~~~~-~ 212 (275)
..++.++ ++.++++||++|...+ .+|.|+ +|||++|+|||+++||+||++||||+++... .+++.+. ++.. .
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~ 113 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS 113 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence 4455444 4578899999986543 278998 9999999999999999999999999998774 4555554 4332 2
Q ss_pred EEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCC
Q 023914 213 QIYIIFLAKLKRPHFSPG-PESSECRLFALDEIP 245 (275)
Q Consensus 213 ~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~ 245 (275)
..+++|.+.. .+++.++ +|..+++|+++++++
T Consensus 114 ~~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~ 146 (171)
T 1q27_A 114 SFMCVYELRS-DATPIFNPNDISGGEWLTPEHLL 146 (171)
T ss_dssp SEEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHH
T ss_pred cEEEEEEEEE-CCccccCchhhheEEEecHHHHH
Confidence 3667788887 5555543 788899999999987
No 53
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.70 E-value=7.3e-18 Score=147.62 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=87.9
Q ss_pred EEEEEEEeeCCeEEEEEeccCC----CCCceee-eeEEeeCCCC------HHHHHHHHHHHHhCCccccceeeEEEEeCC
Q 023914 142 MVVGCLIEHDKKILLCKRKIEP----SYGLWTL-PAGYMEIGES------AAEGAIRETWEEARADVEVQSPFAQLDIPR 210 (275)
Q Consensus 142 ~~V~viI~~~~~iLL~rr~~~p----~~g~w~l-PgG~vE~GEs------~eeAa~REl~EEtGl~v~~~~~~~~~~~~~ 210 (275)
++..+++.+++++||++|...+ ..|.|++ |||+||+||| +++||+||++||||+++....+++...+..
T Consensus 69 ~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~ 148 (211)
T 3e57_A 69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST 148 (211)
T ss_dssp EEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS
T ss_pred eEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccC
Confidence 4455677889999999998664 2478999 9999999999 499999999999999999999999887643
Q ss_pred C----CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCc-HHHHHHHHHHHHHhh
Q 023914 211 I----GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFS-SISVTLQLVRFYFEH 267 (275)
Q Consensus 211 ~----~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~-s~~~al~li~~~l~~ 267 (275)
. ..+.++|.++...+++. ++|..+++|+++++|+...-.++ -...+++.|++|+..
T Consensus 149 ~~~~~~~l~~~f~~~~~~g~~~-~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~l~~~~~~ 209 (211)
T 3e57_A 149 TEVSRVHLGALFLGRGKFFSVK-EKDLFEWELIKLEELEKFSGVMEGWSKISAAVLLNLFLT 209 (211)
T ss_dssp SHHHHTEEEEEEEEEEEEEEES-CTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHHHHHHC--
T ss_pred CCCCeEEEEEEEEEEeCCceeC-CCCeEEEEEEEHHHHHHhHhhccchhHHHHHHHHHHHhc
Confidence 2 13445788887755442 36677899999999985322343 334555666666543
No 54
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.70 E-value=2e-17 Score=135.81 Aligned_cols=100 Identities=28% Similarity=0.358 Sum_probs=72.4
Q ss_pred EEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceee----EEEEeCC----------
Q 023914 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF----AQLDIPR---------- 210 (275)
Q Consensus 145 ~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~----~~~~~~~---------- 210 (275)
+++++.+++|||++|... +|.|++|||++|+|||+++||+||++||||+++..+... ..+.++.
T Consensus 19 ~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (165)
T 1f3y_A 19 ICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQW 96 (165)
T ss_dssp EEEECTTSCEEEEEETTE--EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHHGGGS
T ss_pred EEEECCCCcEEEEecCCC--CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccccccc
Confidence 345567889999999853 489999999999999999999999999999987543221 1111110
Q ss_pred ----CCEEEEEEEEEEcCCC--CCC------CCCceeEEEecCCCCCC
Q 023914 211 ----IGQIYIIFLAKLKRPH--FSP------GPESSECRLFALDEIPF 246 (275)
Q Consensus 211 ----~~~~~~~f~a~~~~~e--~~~------~~E~~d~~W~~~deL~~ 246 (275)
.+...++|.+.+.... +.. .+|..+++|++++++..
T Consensus 97 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 144 (165)
T 1f3y_A 97 GSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID 144 (165)
T ss_dssp CSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHH
T ss_pred cccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHH
Confidence 1224566777776542 332 46889999999999984
No 55
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.69 E-value=4.6e-17 Score=138.69 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=80.3
Q ss_pred EEEEEEEeeCC--eEEEEEeccC--CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCCEEE
Q 023914 142 MVVGCLIEHDK--KILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQIY 215 (275)
Q Consensus 142 ~~V~viI~~~~--~iLL~rr~~~--p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~~~~ 215 (275)
.++++++++++ +|||++|... +..|.|++|||++|+||++++||+||++||||+++...++++.+.. ...+..+
T Consensus 36 ~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 115 (194)
T 1nqz_A 36 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHV 115 (194)
T ss_dssp EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEE
T ss_pred EEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCCCeEE
Confidence 34444556667 8999998753 3478999999999999999999999999999999998888876542 2345667
Q ss_pred EEEEEEEcCC-C-CC-CCCCceeEEEecCCCC-CC
Q 023914 216 IIFLAKLKRP-H-FS-PGPESSECRLFALDEI-PF 246 (275)
Q Consensus 216 ~~f~a~~~~~-e-~~-~~~E~~d~~W~~~deL-~~ 246 (275)
++|.+..... + .. .++|..+++|++++++ ..
T Consensus 116 ~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 150 (194)
T 1nqz_A 116 TPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV 150 (194)
T ss_dssp EEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred EEEEEEecCCccccCCCccceeEEEEEEHHHhccC
Confidence 7888887632 2 33 3478899999999999 54
No 56
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.69 E-value=1e-16 Score=145.07 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=75.8
Q ss_pred ccCCcEEEEEEEee--CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe-CCCCE
Q 023914 137 YQNPKMVVGCLIEH--DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-PRIGQ 213 (275)
Q Consensus 137 y~~p~~~V~viI~~--~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-~~~~~ 213 (275)
|.....++++++.+ +++|||++|... +|.|++|||++|+|||+++||+||++||||+++..+..+..+.. ...+.
T Consensus 97 ~~~~v~~v~avv~~~~~~~vLLv~r~~~--~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~~~~~ 174 (271)
T 2a6t_A 97 YKTRIPVRGAIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQ 174 (271)
T ss_dssp HSCCCCEEEEEEBCSSSSEEEEEEESST--TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTE
T ss_pred cCCCCCeEEEEEEECCCCEEEEEEEeCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCCcCCc
Confidence 44444555555544 489999999754 58899999999999999999999999999999876543322221 12344
Q ss_pred EEEEEEEEEcCC--CCC--CCCCceeEEEecCCCCCCC
Q 023914 214 IYIIFLAKLKRP--HFS--PGPESSECRLFALDEIPFD 247 (275)
Q Consensus 214 ~~~~f~a~~~~~--e~~--~~~E~~d~~W~~~deL~~~ 247 (275)
.+.+|.+..... ... ..+|+.+++|+++++++..
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 212 (271)
T 2a6t_A 175 NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF 212 (271)
T ss_dssp EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred eEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHH
Confidence 566677765432 222 3478899999999999853
No 57
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.68 E-value=4.1e-17 Score=141.24 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=77.6
Q ss_pred CCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEee-CCCCHHHHHHHHHHHHhCCccccceeeEEEE-eCCC-CEE
Q 023914 139 NPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYME-IGESAAEGAIRETWEEARADVEVQSPFAQLD-IPRI-GQI 214 (275)
Q Consensus 139 ~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE-~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-~~~~-~~~ 214 (275)
++..+++++++++++|||++|.+.+ ..|.|++|||++| +||++++||+||++||||+++....+++.+. .+.. ...
T Consensus 42 ~~~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 121 (207)
T 1mk1_A 42 HFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDES 121 (207)
T ss_dssp ECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCC
T ss_pred CCCEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccE
Confidence 4445555555678999999988665 4679999999999 9999999999999999999998888777652 2222 225
Q ss_pred EEEEEEEEcCCCCC---C-CCCceeEEEecCCCCCC
Q 023914 215 YIIFLAKLKRPHFS---P-GPESSECRLFALDEIPF 246 (275)
Q Consensus 215 ~~~f~a~~~~~e~~---~-~~E~~d~~W~~~deL~~ 246 (275)
+++|.+....+... . ++|..++.|++++++..
T Consensus 122 ~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~ 157 (207)
T 1mk1_A 122 VRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAAR 157 (207)
T ss_dssp EEEEEEEEEEECCC----------CEEEEEHHHHHH
T ss_pred EEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHH
Confidence 66777776543322 2 47788999999999864
No 58
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.68 E-value=5.3e-17 Score=138.05 Aligned_cols=101 Identities=19% Similarity=0.339 Sum_probs=77.3
Q ss_pred EEEEeeCCeEEEEEeccCC--CCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccccc-eeeEEEEe----CCC---CE
Q 023914 145 GCLIEHDKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDI----PRI---GQ 213 (275)
Q Consensus 145 ~viI~~~~~iLL~rr~~~p--~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~~~-~~~~~~~~----~~~---~~ 213 (275)
+++++.++++||++|.... .+|.|++ |||++|+|||+++||+||++||||+++..+ .+++.+.+ +.. +.
T Consensus 37 ~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
T 1hzt_A 37 SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENE 116 (190)
T ss_dssp EEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEE
T ss_pred EEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCCcceE
Confidence 3444567899999987532 3699999 999999999999999999999999999887 66554432 222 34
Q ss_pred EEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCC
Q 023914 214 IYIIFLAKLKRPHFSP-GPESSECRLFALDEIPF 246 (275)
Q Consensus 214 ~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~ 246 (275)
.+++|.+... +++.+ .+|..+++|+++++++.
T Consensus 117 ~~~~f~~~~~-~~~~~~~~E~~~~~W~~~~el~~ 149 (190)
T 1hzt_A 117 VCPVFAARTT-SALQINDDEVMDYQWCDLADVLH 149 (190)
T ss_dssp ECCEEEEEBC-SCCCCCTTTEEEEEEECHHHHHH
T ss_pred EEEEEEEecC-CCCcCCccceeeEEEecHHHHHH
Confidence 4567888764 44444 47889999999999864
No 59
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.68 E-value=1e-16 Score=131.49 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=82.3
Q ss_pred CCeEEEEEeccC-CCCCceeeeeEEeeCCCCHH-HHHHHHHHHHhC-CccccceeeEEEEeCCC--CEEEEEEEEEEcCC
Q 023914 151 DKKILLCKRKIE-PSYGLWTLPAGYMEIGESAA-EGAIRETWEEAR-ADVEVQSPFAQLDIPRI--GQIYIIFLAKLKRP 225 (275)
Q Consensus 151 ~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~e-eAa~REl~EEtG-l~v~~~~~~~~~~~~~~--~~~~~~f~a~~~~~ 225 (275)
+++|||++|... ..+|+|+||||.+|+||+++ +|+.||++|||| +.+....+++...+.+. ...+.+|.+....+
T Consensus 33 ~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 112 (155)
T 1x51_A 33 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ 112 (155)
T ss_dssp SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred CCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC
Confidence 479999998754 34799999999999999997 999999999999 88877776665444333 34567788887655
Q ss_pred CCCCCCCceeEEEecCCCCCCCCCCCcH-HHHHHHHHHHHHhhc
Q 023914 226 HFSPGPESSECRLFALDEIPFDSLAFSS-ISVTLQLVRFYFEHM 268 (275)
Q Consensus 226 e~~~~~E~~d~~W~~~deL~~~~l~~~s-~~~al~li~~~l~~~ 268 (275)
++. ..|..+++|++++++.. +.++. .+. +++.+...+
T Consensus 113 ~~~-~~e~~~~~W~~~~el~~--~~~~~~~~~---~l~~~~~~~ 150 (155)
T 1x51_A 113 TPV-TTVPPGARWLTQEEFHT--AAVSTAMKK---VFRVYQGQS 150 (155)
T ss_dssp CCC-CCCCTTEEEEEHHHHHH--SCCCHHHHH---HHHHHHHTC
T ss_pred CCC-CCCCCccEEccHHHhhh--cCCCHHHHH---HHHHHHhcc
Confidence 433 25667899999999984 44444 333 444666543
No 60
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.67 E-value=9.1e-17 Score=139.59 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCccccCCcEEEEEEEe-eCCeEEEEEeccCCC------CCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE
Q 023914 133 GKIAYQNPKMVVGCLIE-HDKKILLCKRKIEPS------YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205 (275)
Q Consensus 133 g~~~y~~p~~~V~viI~-~~~~iLL~rr~~~p~------~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~ 205 (275)
.+..+.++..+++++++ ++++|||+++.+.+. ++.|++|||++|+||++++||+||++||||+.+..+.+++.
T Consensus 50 ~r~~~~~~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~ 129 (209)
T 1g0s_A 50 RREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS 129 (209)
T ss_dssp EEEEEECCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred EEEEEeCCCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence 33455666666555566 478999998765542 47899999999999999999999999999999988888876
Q ss_pred EEe-CCC-CEEEEEEEEEEcCC---C--CC-CCCCceeEEEecCCCCCC
Q 023914 206 LDI-PRI-GQIYIIFLAKLKRP---H--FS-PGPESSECRLFALDEIPF 246 (275)
Q Consensus 206 ~~~-~~~-~~~~~~f~a~~~~~---e--~~-~~~E~~d~~W~~~deL~~ 246 (275)
+.. +.. +..+++|.+..... . .. .++|..++.|++++++..
T Consensus 130 ~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~ 178 (209)
T 1g0s_A 130 FLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ 178 (209)
T ss_dssp EESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred EecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence 632 222 24667788886321 1 12 236778999999999763
No 61
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.67 E-value=1e-15 Score=127.69 Aligned_cols=103 Identities=25% Similarity=0.311 Sum_probs=78.8
Q ss_pred cEEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE------eCC---
Q 023914 141 KMVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD------IPR--- 210 (275)
Q Consensus 141 ~~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~------~~~--- 210 (275)
.++|.+++ +.+++|||++|.. .|.|.+|||++|+|||+++||+||++||||+++...++++.+. .+.
T Consensus 8 ~~~v~~~i~~~~~~vLl~~r~~---~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
T 2kdv_A 8 RPNVGIVICNRQGQVMWARRFG---QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLV 84 (164)
T ss_dssp EEEEEEEEECTTSEEEEEEETT---CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTC
T ss_pred CcEEEEEEEccCCEEEEEEEcC---CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCccee
Confidence 34454444 5678999999873 6899999999999999999999999999999998888777642 221
Q ss_pred --------CCEEEEEEEEEEcCCC--CCC----CCCceeEEEecCCCCCC
Q 023914 211 --------IGQIYIIFLAKLKRPH--FSP----GPESSECRLFALDEIPF 246 (275)
Q Consensus 211 --------~~~~~~~f~a~~~~~e--~~~----~~E~~d~~W~~~deL~~ 246 (275)
.+...++|.+.+..++ +.. .+|+.+++|++.+++..
T Consensus 85 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~ 134 (164)
T 2kdv_A 85 RWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR 134 (164)
T ss_dssp CTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred eeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence 1235677888876543 332 35889999999999764
No 62
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.67 E-value=4e-17 Score=140.51 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=74.8
Q ss_pred eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCC--C
Q 023914 150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPH--F 227 (275)
Q Consensus 150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e--~ 227 (275)
.+++|||++|... +|.|++|||++|+|||+++||+||++||||+++...++++.+.........++|.+.+.... .
T Consensus 52 ~~~~vLLv~r~~~--~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~ 129 (194)
T 2fvv_A 52 SEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDW 129 (194)
T ss_dssp TCCEEEEEECSSC--TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSC
T ss_pred CCCEEEEEEEeCC--CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCCCceEEEEEEEEEccccCCC
Confidence 3689999998754 47999999999999999999999999999999998888888877655666677777654321 1
Q ss_pred CCC-CCceeEEEecCCCCCC
Q 023914 228 SPG-PESSECRLFALDEIPF 246 (275)
Q Consensus 228 ~~~-~E~~d~~W~~~deL~~ 246 (275)
... ++..+++|+++++++.
T Consensus 130 ~~~~e~~~~~~W~~~~el~~ 149 (194)
T 2fvv_A 130 EDSVNIGRKREWFKIEDAIK 149 (194)
T ss_dssp HHHHHHCCCEEEEEHHHHHH
T ss_pred CCcccccceEEEEEHHHHHH
Confidence 111 2336899999999863
No 63
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.67 E-value=1e-16 Score=137.26 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=82.3
Q ss_pred ccccCCcEEEEEEEe-eCCeEEEEEeccCC-------CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE
Q 023914 135 IAYQNPKMVVGCLIE-HDKKILLCKRKIEP-------SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206 (275)
Q Consensus 135 ~~y~~p~~~V~viI~-~~~~iLL~rr~~~p-------~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~ 206 (275)
..+.++..+++++++ +++++||+++.+.+ ..+.|++|||++| ||++++||+||++||||+++..+.+++.+
T Consensus 40 ~~~~~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~ 118 (191)
T 3o6z_A 40 EVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL 118 (191)
T ss_dssp EEEECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE
T ss_pred EEEecCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE
Confidence 345566666665555 36899999987643 4678999999999 99999999999999999999888888875
Q ss_pred Ee-C-CCCEEEEEEEEEEcCCC-----CCCCCCceeEEEecCCCCCC
Q 023914 207 DI-P-RIGQIYIIFLAKLKRPH-----FSPGPESSECRLFALDEIPF 246 (275)
Q Consensus 207 ~~-~-~~~~~~~~f~a~~~~~e-----~~~~~E~~d~~W~~~deL~~ 246 (275)
.. + ..+..+++|.+...... ...++|..+++|++++++..
T Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 165 (191)
T 3o6z_A 119 YMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALE 165 (191)
T ss_dssp ESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHH
T ss_pred EeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHH
Confidence 43 2 23456778888875432 12257888999999999764
No 64
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.66 E-value=1.9e-16 Score=146.76 Aligned_cols=115 Identities=11% Similarity=0.168 Sum_probs=98.1
Q ss_pred CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHh-CCccccceeeEEEEeCCCCEEEEEE
Q 023914 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA-RADVEVQSPFAQLDIPRIGQIYIIF 218 (275)
Q Consensus 140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEt-Gl~v~~~~~~~~~~~~~~~~~~~~f 218 (275)
|.++|++++.++++|||+ +..| |.+|||.+ ||+..++++||++||+ |++++...+++.++.+..+...++|
T Consensus 182 p~~~vgaii~~~g~vLL~-----~~~G-W~LPG~~~--~~~~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~~~~~i~f 253 (321)
T 3rh7_A 182 GEIRLGAVLEQQGAVFLA-----GNET-LSLPNCTV--EGGDPARTLAAYLEQLTGLNVTIGFLYSVYEDKSDGRQNIVY 253 (321)
T ss_dssp SCEEEEEEEESSSCEEEB-----CSSE-EBCCEEEE--SSSCHHHHHHHHHHHHHSSCEEEEEEEEEEECTTTCCEEEEE
T ss_pred CcceEEEEEEECCEEEEe-----eCCC-ccCCcccC--CCChhHHHHHHHHHHhcCCEEeeceEEEEEEcCCCceEEEEE
Confidence 678899999999999999 2468 99998755 5555569999999997 9999999999999988777788899
Q ss_pred EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcccc
Q 023914 219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLI 271 (275)
Q Consensus 219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~~i 271 (275)
.|+..+++ ..+++||+++|||+.++++++.+.+++ +|+++++.-
T Consensus 254 ~~~~~~g~------~~e~~~f~~~elp~~~~~~~~~~~~L~---~y~~e~~~g 297 (321)
T 3rh7_A 254 HALASDGA------PRQGRFLRPAELAAAKFSSSATADIIN---RFVLESSIG 297 (321)
T ss_dssp EEEECSSC------CSSSEEECHHHHTTCEESSHHHHHHHH---HHHHTTSCS
T ss_pred EEEeCCCC------eeeeEEECHHHCCCcccCCHHHHHHHH---HHHHHhhcC
Confidence 99987664 267999999999998888999988777 999987653
No 65
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.65 E-value=5.4e-16 Score=134.61 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=75.5
Q ss_pred cEEEEEEEeeC---CeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-eC-CCCEE
Q 023914 141 KMVVGCLIEHD---KKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-IP-RIGQI 214 (275)
Q Consensus 141 ~~~V~viI~~~---~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-~~-~~~~~ 214 (275)
.++|++++.++ ++|||+++.+.+ .++.|++|||++|+||++++||+||++||||+.+....+++.+. .+ ..+..
T Consensus 63 av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 142 (212)
T 2dsc_A 63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCT 142 (212)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCE
T ss_pred EEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCce
Confidence 34444445443 489999876554 35689999999999999999999999999999988777665442 22 22345
Q ss_pred EEEEEEEEcCC-------CCCC-CCCceeEEEecCCCCC
Q 023914 215 YIIFLAKLKRP-------HFSP-GPESSECRLFALDEIP 245 (275)
Q Consensus 215 ~~~f~a~~~~~-------e~~~-~~E~~d~~W~~~deL~ 245 (275)
++.|.+.+... ...+ ++|..++.|++++++.
T Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~ 181 (212)
T 2dsc_A 143 IHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLL 181 (212)
T ss_dssp EEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHH
T ss_pred EEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHH
Confidence 56677765321 2233 3788899999999986
No 66
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.63 E-value=9.8e-16 Score=134.57 Aligned_cols=110 Identities=19% Similarity=0.122 Sum_probs=78.3
Q ss_pred ccCCcEEEEEEEe-eCCeEEEEEeccCC-C-------------------------------CCceeeeeEEeeC-CCCHH
Q 023914 137 YQNPKMVVGCLIE-HDKKILLCKRKIEP-S-------------------------------YGLWTLPAGYMEI-GESAA 182 (275)
Q Consensus 137 y~~p~~~V~viI~-~~~~iLL~rr~~~p-~-------------------------------~g~w~lPgG~vE~-GEs~e 182 (275)
..++..+++++++ .++++||+|+.+.+ . ++.|++|||++|+ |||++
T Consensus 33 v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~ 112 (218)
T 3q91_A 33 MKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLE 112 (218)
T ss_dssp --CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHH
T ss_pred EEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHH
Confidence 3344445444455 46899999976533 1 5789999999999 99999
Q ss_pred HHHHHHHHHHhCCcc--ccceeeEEEEe-C-CCCEEEEEEEEEEcCC------CCCC-CCCceeEEEecCCCCCC
Q 023914 183 EGAIRETWEEARADV--EVQSPFAQLDI-P-RIGQIYIIFLAKLKRP------HFSP-GPESSECRLFALDEIPF 246 (275)
Q Consensus 183 eAa~REl~EEtGl~v--~~~~~~~~~~~-~-~~~~~~~~f~a~~~~~------e~~~-~~E~~d~~W~~~deL~~ 246 (275)
+||+||++||||+++ ..+..++.+.. + ..+..+++|.+..... ...+ ++|..++.|++++++..
T Consensus 113 eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~ 187 (218)
T 3q91_A 113 EVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQA 187 (218)
T ss_dssp HHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence 999999999999998 77777776543 2 3456778888887531 2223 37889999999999753
No 67
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.63 E-value=2.1e-16 Score=137.68 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCC-CHHHHHHHHHHHHhCCccccce-----eeEE
Q 023914 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARADVEVQS-----PFAQ 205 (275)
Q Consensus 132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GE-s~eeAa~REl~EEtGl~v~~~~-----~~~~ 205 (275)
|....|.....++++++++++++||.+|. .|.|++|||++|+|| |+++||+||++||||+.+.... +++.
T Consensus 36 ~~~~l~~~~~~vv~~i~~~~~~vLl~~r~----~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~ 111 (212)
T 1u20_A 36 CHALLHAPSQAKLFDRVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSS 111 (212)
T ss_dssp EEEEEEEECCCEETTTEECCEEEEEEEET----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEE
T ss_pred ceEEEeCCCceEEEEEEecCCEEEEEEeC----CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEe
Confidence 44444544344444555677899999883 689999999999999 9999999999999999987553 5666
Q ss_pred EEeCCC-CEEEEEEEEEEcCCCC----------C-CCCCceeEEEecCCCCCC
Q 023914 206 LDIPRI-GQIYIIFLAKLKRPHF----------S-PGPESSECRLFALDEIPF 246 (275)
Q Consensus 206 ~~~~~~-~~~~~~f~a~~~~~e~----------~-~~~E~~d~~W~~~deL~~ 246 (275)
....++ +..+++|.+....+++ . .++|..++.|++++++..
T Consensus 112 ~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~ 164 (212)
T 1u20_A 112 QVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD 164 (212)
T ss_dssp EEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred ccccCCCcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence 555443 6777888888754322 1 236778899999999975
No 68
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.61 E-value=1.3e-15 Score=142.57 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=83.9
Q ss_pred CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC---------------CEEE
Q 023914 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI---------------GQIY 215 (275)
Q Consensus 151 ~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~---------------~~~~ 215 (275)
+.+|||++|. ..|.|++|||++|+|||+++||+||++||||+++....+++...+... ...+
T Consensus 37 ~~~vLLv~r~---~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (364)
T 3fjy_A 37 SIEVCIVHRP---KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHT 113 (364)
T ss_dssp TEEEEEEEET---TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CE
T ss_pred ceEEEEEEcC---CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEE
Confidence 4589999985 358999999999999999999999999999999988888886655332 3556
Q ss_pred EEEEEEEcCCC------------CCC-CCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914 216 IIFLAKLKRPH------------FSP-GPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266 (275)
Q Consensus 216 ~~f~a~~~~~e------------~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~ 266 (275)
++|.+....++ ... .+|..+++|++++++.. .+.++..+.+++.+.++++
T Consensus 114 ~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~-~~~~~~~r~il~~~~~~l~ 176 (364)
T 3fjy_A 114 LYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARK-ILSHSTDKDTLAVFVDRVQ 176 (364)
T ss_dssp EEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHH-HCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHH-HhcchhhHHHHHHHHHHhc
Confidence 67888876542 122 37889999999999874 3456777776665555554
No 69
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.60 E-value=2.3e-15 Score=141.66 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=84.1
Q ss_pred EEEEE-eeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEEE
Q 023914 144 VGCLI-EHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIFL 219 (275)
Q Consensus 144 V~viI-~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f~ 219 (275)
+++++ +++++|||+||... ..+|+|+||||.+|+| |+++|+.||++||+|+++....+++...+.+. +..+.+|.
T Consensus 243 ~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~ 321 (369)
T 3fsp_A 243 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFP 321 (369)
T ss_dssp EEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEE
T ss_pred EEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEE
Confidence 34444 46899999999864 3579999999999999 99999999999999999988888776655444 45667788
Q ss_pred EEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
+...++ .+|..+++|+++++++...+. +..+..++
T Consensus 322 ~~~~~~----~~e~~~~~Wv~~~el~~~~l~-~~~~~il~ 356 (369)
T 3fsp_A 322 GRLVHG----GPVEEPYRLAPEDELKAYAFP-VSHQRVWR 356 (369)
T ss_dssp EEECCS----SCCCTTEEEEEGGGGGGSCCC-HHHHHHHH
T ss_pred EEEcCC----CCCccccEEeeHHHhhhCCCC-HHHHHHHH
Confidence 887553 357788999999999854332 33444444
No 70
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.58 E-value=2.5e-15 Score=131.80 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=79.4
Q ss_pred CCCccccCCcEEEE-EEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCC-CHHHHHHHHHHHHhCCcccc--c---eeeE
Q 023914 132 CGKIAYQNPKMVVG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARADVEV--Q---SPFA 204 (275)
Q Consensus 132 Cg~~~y~~p~~~V~-viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GE-s~eeAa~REl~EEtGl~v~~--~---~~~~ 204 (275)
|+...|+ +.+.++ +++..++++||..|. .|.|++|||++|+|| |+++||+||++||||+++.. + .++.
T Consensus 45 ~~~~~~~-~~~~~v~~vi~~~~~~ll~~r~----~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~ 119 (217)
T 2xsq_A 45 CHALLYA-PDPGMLFGRIPLRYAILMQMRF----DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRS 119 (217)
T ss_dssp EEEEEEE-EEEEEETTTEEEEEEEEEEEET----TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEE
T ss_pred eeeEEEc-CCCcEEEEEEEeeCcEEEEEcc----CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEe
Confidence 7777786 544433 333323356666654 588999999999999 99999999999999998873 2 3444
Q ss_pred EEEeCCCCEEEEEEEEEEcCCCC----------CC-CCCceeEEEecCCCCCC
Q 023914 205 QLDIPRIGQIYIIFLAKLKRPHF----------SP-GPESSECRLFALDEIPF 246 (275)
Q Consensus 205 ~~~~~~~~~~~~~f~a~~~~~e~----------~~-~~E~~d~~W~~~deL~~ 246 (275)
..+....+..+++|.+.+..+++ .. ++|..++.|++.+++..
T Consensus 120 ~~~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d 172 (217)
T 2xsq_A 120 SHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRD 172 (217)
T ss_dssp EEECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTT
T ss_pred ecCCCCCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhhh
Confidence 44444457788888888765433 22 36788999999999973
No 71
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.54 E-value=8.2e-14 Score=127.26 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=69.9
Q ss_pred eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc------------ccceee---EE--E--EeCCC--
Q 023914 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV------------EVQSPF---AQ--L--DIPRI-- 211 (275)
Q Consensus 153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v------------~~~~~~---~~--~--~~~~~-- 211 (275)
++||++|.. .|.|.+|||+||+||++++||+||++||||+.+ ....++ +. + ....+
T Consensus 140 ~vLl~~r~~---~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~ 216 (292)
T 1q33_A 140 QFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 216 (292)
T ss_dssp EEEEEECTT---TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTC
T ss_pred EEEEEEecC---CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCC
Confidence 699999874 589999999999999999999999999999983 111222 11 1 11121
Q ss_pred ----CEEEEEEEEEEcCCC------CCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914 212 ----GQIYIIFLAKLKRPH------FSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259 (275)
Q Consensus 212 ----~~~~~~f~a~~~~~e------~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~ 259 (275)
....++|.+....++ +..++|+.+++|+++++++ .+.++ ...+++
T Consensus 217 ~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~--~L~~~-h~~il~ 271 (292)
T 1q33_A 217 TDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL--KLYAS-HSQFIK 271 (292)
T ss_dssp CSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC--CCSTT-HHHHHH
T ss_pred CcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCc--ccCHh-HHHHHH
Confidence 234566777664432 2345888999999999998 45444 444344
No 72
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.48 E-value=6.8e-14 Score=124.93 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=76.4
Q ss_pred EEEEEE-EeeCCeEEEEEeccCC--CCCceeeee-EEeeCC------CCH---HHHHHHHHHHHhCCccc-----cceee
Q 023914 142 MVVGCL-IEHDKKILLCKRKIEP--SYGLWTLPA-GYMEIG------ESA---AEGAIRETWEEARADVE-----VQSPF 203 (275)
Q Consensus 142 ~~V~vi-I~~~~~iLL~rr~~~p--~~g~w~lPg-G~vE~G------Es~---eeAa~REl~EEtGl~v~-----~~~~~ 203 (275)
.++.++ ++.++++||+||+... .+|+|++|+ |++++| |++ ++||+||++||+|+.+. .+.++
T Consensus 71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l 150 (246)
T 2pny_A 71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM 150 (246)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence 344444 4567899999997543 479999995 999999 887 99999999999999875 24666
Q ss_pred EEEEeC--CC-----CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914 204 AQLDIP--RI-----GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF 246 (275)
Q Consensus 204 ~~~~~~--~~-----~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~ 246 (275)
+.+.+. .. +...++|.+... +++.++ +|+.+++|++++++..
T Consensus 151 ~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~~~Ev~~~~wv~~eel~~ 200 (246)
T 2pny_A 151 TIYHHKAKSDRIWGEHEICYLLLVRKN-VTLNPDPSETKSILYLSQEELWE 200 (246)
T ss_dssp EEEEEEEESSSSBEEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHH
T ss_pred EEEEEEecCCCceeeeEEEEEEEEEEC-CCCCCChHHeeEEEEEeHHHHHH
Confidence 655432 11 234566777753 455565 8999999999999853
No 73
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.48 E-value=8.1e-14 Score=123.53 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=76.1
Q ss_pred EEEEE-EEeeCCeEEEEEeccCC--CCCceeee-eEEeeCC------CC---HHHHHHHHHHHHhCCccc-----cceee
Q 023914 142 MVVGC-LIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIG------ES---AAEGAIRETWEEARADVE-----VQSPF 203 (275)
Q Consensus 142 ~~V~v-iI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~G------Es---~eeAa~REl~EEtGl~v~-----~~~~~ 203 (275)
.++.+ +++.++++||+||+... .+|+|++| ||++++| |+ +++||+||++||||+.+. .+.++
T Consensus 60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l 139 (235)
T 2dho_A 60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL 139 (235)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence 34444 44567899999997543 47999999 5999999 88 499999999999999875 35666
Q ss_pred EEEEeC--CC-----CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914 204 AQLDIP--RI-----GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF 246 (275)
Q Consensus 204 ~~~~~~--~~-----~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~ 246 (275)
+.+.+. .. +.+..+|.+... +++.++ +|..+++|++++++..
T Consensus 140 ~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~~~Ev~~~~wv~~~el~~ 189 (235)
T 2dho_A 140 TRIHYKAQSDGIWGEHEIDYILLVRMN-VTLNPDPNEIKSYCYVSKEELKE 189 (235)
T ss_dssp EEEEEEEECSSSBEEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHH
T ss_pred EEEEEeccCCCccceeEEEEEEEEEEC-CCCcCChHHEEEEEEEcHHHHHH
Confidence 655432 11 224466777753 455554 8999999999999853
No 74
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.28 E-value=1.4e-11 Score=113.01 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=79.9
Q ss_pred eEEEEEeccCC--CCCce-eeeeEEeeCCCCHHHHHHHHHHHHhCCcccc---ceeeEEEEe----CC--CCEEEEEEEE
Q 023914 153 KILLCKRKIEP--SYGLW-TLPAGYMEIGESAAEGAIRETWEEARADVEV---QSPFAQLDI----PR--IGQIYIIFLA 220 (275)
Q Consensus 153 ~iLL~rr~~~p--~~g~w-~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~---~~~~~~~~~----~~--~~~~~~~f~a 220 (275)
++||.||+... .+|+| .++||++++||++++||+||+.||+|+.+.. +...+...+ +. .+..+++|.+
T Consensus 134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~ 213 (300)
T 3dup_A 134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDL 213 (300)
T ss_dssp EEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEE
Confidence 89999998654 48999 5889999999999999999999999998753 233333222 21 1234566777
Q ss_pred EEcCCC-CCCC-CCceeEEEecCCCCCC-----CCCCCcHHHHHHHHHHHHHhhccccc
Q 023914 221 KLKRPH-FSPG-PESSECRLFALDEIPF-----DSLAFSSISVTLQLVRFYFEHMTLIC 272 (275)
Q Consensus 221 ~~~~~e-~~~~-~E~~d~~W~~~deL~~-----~~l~~~s~~~al~li~~~l~~~~~i~ 272 (275)
.+..+. +.++ +|+.+++|++++|+.. ..+.+.....+ - +|+.++..|.
T Consensus 214 ~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~pg~F~p~~~lV~-l---dfl~RhG~i~ 268 (300)
T 3dup_A 214 ALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTV-I---DFAIRHGLID 268 (300)
T ss_dssp ECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHH-H---HHHHHTTSSC
T ss_pred EecCCCcCCCCchHhheEEEECHHHHHHHHhcCCCcCccHHHHH-H---HHHHHhCCcC
Confidence 765432 3444 8999999999999743 34544443332 2 5766665544
No 75
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.27 E-value=2.6e-11 Score=107.38 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=66.0
Q ss_pred CeEEEEEeccCCC--CCceeeeeEEeeCCCC--------------------HHHHHHHHHHHHhCCccccc---------
Q 023914 152 KKILLCKRKIEPS--YGLWTLPAGYMEIGES--------------------AAEGAIRETWEEARADVEVQ--------- 200 (275)
Q Consensus 152 ~~iLL~rr~~~p~--~g~w~lPgG~vE~GEs--------------------~eeAa~REl~EEtGl~v~~~--------- 200 (275)
.+|||+||..... +|.|.||||.||+||+ +.+||+||++||||+.+...
T Consensus 24 ~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~ 103 (232)
T 3qsj_A 24 IEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDT 103 (232)
T ss_dssp EEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCS
T ss_pred eEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccCh
Confidence 3899999987642 7999999999999987 58999999999999975211
Q ss_pred ---------------------------------eeeEEEEeCC--C-CEEEEEEEEEEcCCC-CCC-CCCceeEEEecCC
Q 023914 201 ---------------------------------SPFAQLDIPR--I-GQIYIIFLAKLKRPH-FSP-GPESSECRLFALD 242 (275)
Q Consensus 201 ---------------------------------~~~~~~~~~~--~-~~~~~~f~a~~~~~e-~~~-~~E~~d~~W~~~d 242 (275)
.+++.+-.|. + +....+|.+.+.... +.. .+|..+++|++++
T Consensus 104 ~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~ 183 (232)
T 3qsj_A 104 PLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPAR 183 (232)
T ss_dssp CCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHH
T ss_pred hhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHH
Confidence 1111111121 1 244566777766332 233 4899999999999
Q ss_pred CC
Q 023914 243 EI 244 (275)
Q Consensus 243 eL 244 (275)
|+
T Consensus 184 ea 185 (232)
T 3qsj_A 184 DM 185 (232)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=105.47 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=67.9
Q ss_pred eEEEEEeccCCCCCceeeeeEEeeCCC-CHHHHHHHHHHHHhCC-ccccceeeEEEEeCCC-CEEEEEEEEEEcCCCCC-
Q 023914 153 KILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARA-DVEVQSPFAQLDIPRI-GQIYIIFLAKLKRPHFS- 228 (275)
Q Consensus 153 ~iLL~rr~~~p~~g~w~lPgG~vE~GE-s~eeAa~REl~EEtGl-~v~~~~~~~~~~~~~~-~~~~~~f~a~~~~~e~~- 228 (275)
.||++.|. .|.|+||||+||+|| |+++|+.||+.||+|+ ++....++.+..+..+ ...+++|.+++..+++.
T Consensus 45 ~iLmQ~R~----~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp~~V~LHfY~crl~~Ge~~~ 120 (214)
T 3kvh_A 45 SVLMQMRF----DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHA 120 (214)
T ss_dssp EEEEEEET----TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC----CEEEEEEEEECCHHHHHH
T ss_pred eEEEeeee----CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCCCEEEEEEEEEEeeCCccch
Confidence 46777665 699999999999999 9999999999999997 6888888888766554 67888999998766521
Q ss_pred ----------CCCCceeEEEecCCCCCC
Q 023914 229 ----------PGPESSECRLFALDEIPF 246 (275)
Q Consensus 229 ----------~~~E~~d~~W~~~deL~~ 246 (275)
-+-|.....-++.=.+.+
T Consensus 121 lE~~A~~A~d~G~EvlGlvRVPlytl~D 148 (214)
T 3kvh_A 121 VEISAVHSRDHGLEVLGLVRVPLYTQKD 148 (214)
T ss_dssp HHHHHHTSTTBTTTEEEEEEECCCBCTT
T ss_pred hhhcccCCcccCceecceEEeeeEEecc
Confidence 135666677777776654
No 77
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.96 E-value=6.2e-10 Score=96.36 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=47.8
Q ss_pred EEEEeeCC--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhC------CccccceeeEEEEeC
Q 023914 145 GCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEAR------ADVEVQSPFAQLDIP 209 (275)
Q Consensus 145 ~viI~~~~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtG------l~v~~~~~~~~~~~~ 209 (275)
++++++++ +|||+|+. .+.|.+|||.+|+||+.++|++||+.||+| .+++..++++.+-.+
T Consensus 64 vil~~~~~~phVLLlq~~----~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~wwRp 132 (208)
T 3bho_A 64 VLIVHEHRLPHVLLLQLG----TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRP 132 (208)
T ss_dssp EEEEEETTEEEEEEEEEE----TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEEEC
T ss_pred EEEEcCCCCcEEEEEEcC----CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEecC
Confidence 33444444 79999975 468999999999999999999999999999 456667788876533
No 78
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.68 E-value=1.3e-05 Score=54.10 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=26.9
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
+.++|||.||+..... ....+.+|++||+++|.
T Consensus 17 ~~~k~CP~CG~~~fm~----~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMA----DHGDRWACGKCGYTEWK 49 (50)
T ss_dssp CSSEECSSSCSSCEEE----ECSSEEECSSSCCEEEC
T ss_pred EecccCCCCCCceEEe----cCCCeEECCCCCCEEEC
Confidence 4679999999987665 33568999999999985
No 79
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=96.55 E-value=0.0014 Score=44.89 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=26.2
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCC
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP 140 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p 140 (275)
+..+|||.||..+... ....+..|..||.+.|-.+
T Consensus 16 ~~~~fCPkCG~~~~ma----~~~dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLA----EHADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp CSSCCCTTTTTTCCCE----ECSSEEECTTTCCCEECCC
T ss_pred EccccCcCCCCceeEe----ccCCEEECCCCCCEEEeCc
Confidence 4579999999976544 2245899999999877543
No 80
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.07 E-value=0.0063 Score=47.56 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=29.8
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
..+|||.||.-|......+++..+..|..|++.++..
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 5789999999998875444456789999999988754
No 81
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.026 Score=45.39 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=26.4
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
...+|||.||.-|........+..+..|..|++..-
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 446999999999977632112456899999998663
No 82
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=92.67 E-value=0.046 Score=47.93 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHHH-hhhhcCCCCcCCCCC-CcccccCCCccceeecCCCCCcc
Q 023914 93 AAVHSA-GNVLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 93 ~a~~l~-~w~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
.|+=|. .|...+.|||.||+. +... .....---..|+.|+..+
T Consensus 22 ~aRVLTE~Wv~~n~yCPnCG~~~l~~f-~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 22 KARILTEDWVYRQSYCPNCGNNPLNHF-ENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HHHHHHHHHHHHHCCCTTTCCSSCEEC-----CCCEEECTTTCCEE
T ss_pred eehhhhHHHHHHCCcCCCCCChhhhhc-cCCCcccccccCCcchhh
Confidence 444443 699999999999995 4333 221122237999998644
No 83
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=91.46 E-value=0.089 Score=41.45 Aligned_cols=36 Identities=14% Similarity=0.386 Sum_probs=26.1
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
..+|||.||.-|...........+..|..||+..-.
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 568999999999765311123568999999986643
No 84
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=91.14 E-value=0.15 Score=33.57 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=22.1
Q ss_pred CCCCcCCCC-CCcccccCCCccceeecCCCCCccccC
Q 023914 104 ISFCQWCGG-QTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 104 ~~fC~~CG~-~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
...||.||+ .+... .+.-..+|..||.++-.+
T Consensus 5 ~~~CP~C~~~~l~~d----~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESAELIYD----PERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCCCEEEE----TTTTEEEESSSCCBCCCC
T ss_pred cEeCcCCCCcceEEc----CCCCeEECcccCCccccc
Confidence 457999999 65443 233348999999876543
No 85
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=88.83 E-value=0.14 Score=36.57 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCC-ccccC
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGK-IAYQN 139 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~-~~y~~ 139 (275)
-|+.||...+.. .+...+|+.||. +.|..
T Consensus 30 ~C~~CG~~~e~~-----~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 30 ICAECSSKLSLS-----RTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp ECSSSCCEECCC-----TTSTTCCSSSCCCCCBCC
T ss_pred ECCCCCCcceeC-----CCCCccCCCCCceEeEec
Confidence 599999997665 223458999998 67753
No 86
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=88.34 E-value=0.13 Score=37.95 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 97 SAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
+..-....-.||.||+.+... .+--.+.|+.||..
T Consensus 20 ie~~q~~~y~Cp~CG~~~v~r----~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 20 IESEMNEDHACPNCGEDRVDR----QGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHSCEECSSSCCEEEEE----EETTEEEETTTCCE
T ss_pred HHHhccccCcCCCCCCcceec----cCCCeEECCCCCCE
Confidence 333344566899999976554 23346899999975
No 87
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=87.98 E-value=0.22 Score=35.33 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=23.3
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
...--||.|++++... ..+...+|++|| ..||
T Consensus 6 L~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP 37 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFD----KSKDELICKGDR-LAFP 37 (68)
T ss_dssp EEECBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred hhheECCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence 3445799999999876 334568999998 4454
No 88
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=87.82 E-value=0.23 Score=35.23 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.5
Q ss_pred hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
|....--||.|++++... ......+|++|| ..||
T Consensus 4 ~LL~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP 37 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH----QDKQELWSRQAK-LAYP 37 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred HHhhheECCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence 344556799999999876 334568999998 4454
No 89
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=87.22 E-value=0.22 Score=35.53 Aligned_cols=35 Identities=20% Similarity=0.540 Sum_probs=24.8
Q ss_pred hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
|....--||.|++++... ..+...+|++|| ..||-
T Consensus 4 ~LL~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YPI 38 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQ----RAQAELVCNADR-LAFPV 38 (70)
T ss_dssp CCCCCCBCTTTCCBEEEE----TTTTEEEETTTT-EEEEE
T ss_pred HHhhheECCCCCCcCEEe----CCCCEEEcCCCC-ceecC
Confidence 334556799999998776 334568999998 45553
No 90
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=86.28 E-value=0.44 Score=33.80 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=25.1
Q ss_pred hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
|....--||.|++++... ..+...+|++|| ..||
T Consensus 4 ~LLeiL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP 37 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLS----ADKTELISKGAG-LAYP 37 (69)
T ss_dssp CGGGTCCCTTTCCCCEEC----TTSSEEEETTTT-EEEE
T ss_pred HHHhheeCCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence 445567899999999876 334568999998 4555
No 91
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.48 E-value=0.43 Score=32.59 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=21.6
Q ss_pred hhcCCCCcCCCCC-CcccccCCCccceeecCCCCCcccc
Q 023914 101 VLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 101 ~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
......||.||+. +... ...--.+|..||.+.-.
T Consensus 8 ll~~~~Cp~C~~~~lv~D----~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVED----YRAGDMICPECGLVVGD 42 (58)
T ss_dssp CCSCCSBTTBSSSCCEEC----SSSCCEECTTTCCEECC
T ss_pred ccccccCcCCCCCceeEe----CCCCeEEeCCCCCEEec
Confidence 3445689999984 3332 12233799999976543
No 92
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=82.31 E-value=0.51 Score=37.55 Aligned_cols=31 Identities=16% Similarity=0.390 Sum_probs=25.1
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
...-||.|+++.... ++...+||.|+++.-+
T Consensus 26 ~lP~CP~C~seytYe-----Dg~l~vCPeC~hEW~~ 56 (138)
T 2akl_A 26 TLPPCPQCNSEYTYE-----DGALLVCPECAHEWSP 56 (138)
T ss_dssp CSCCCTTTCCCCCEE-----CSSSEEETTTTEEECT
T ss_pred cCCCCCCCCCcceEe-----cCCeEECCccccccCC
Confidence 458899999998665 4566999999988754
No 93
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=81.38 E-value=0.91 Score=31.99 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
.|....--||.|++++... ..+...+|+.|+ ..||
T Consensus 5 ~~LLeiL~CP~ck~~L~~~----~~~g~LvC~~c~-~~YP 39 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYL----ESEQLLVNERLN-LAYR 39 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred HHHHHHhCCCCCCCcCeEe----CCCCEEEcCCCC-cccc
Confidence 4556677899999999876 334468999998 4555
No 94
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=81.20 E-value=0.55 Score=34.38 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=20.7
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
.+.+|||.|+..+... .+.....|+.|++.
T Consensus 23 ~~~~wCP~C~~~~~~~----~~~~~v~C~~C~~~ 52 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYE----REQLEATCPQCHQT 52 (86)
T ss_dssp CCEECCSSSCCCEECC----CSCSCEECTTTCCE
T ss_pred CCEeECcCCCchheec----CCCCceEeCCCCCc
Confidence 4557899999987443 23455789888864
No 95
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=80.86 E-value=1 Score=29.48 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=21.2
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
-|.+||+.+..... +--..-.||-||+..+-
T Consensus 5 ~C~rCg~~fs~~el--~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTDEQL--KVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCCCCS--CCCSSSCCTTTCCSCEE
T ss_pred EeeccCCCccHHHH--hhCCCcccCccCcEEEE
Confidence 49999999865532 12233589999987654
No 96
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=80.75 E-value=1.1 Score=32.11 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=22.2
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
....-.||.||+....+ .+--.+.|..|+...
T Consensus 23 q~~ky~C~fCgk~~vkR----~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 23 QHARYDCSFCGKKTVKR----GAAGIWTCSCCKKTV 54 (72)
T ss_dssp HHSCBCCSSCCSSCBSB----CSSSCBCCSSSCCCC
T ss_pred hccCccCCCCCCceeEe----cCCCeEECCCCCCEE
Confidence 34456899999886544 233458999998753
No 97
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=80.57 E-value=0.79 Score=37.31 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.8
Q ss_pred hhcCCCCcC--CCCCCcccccCCCccceeecCCCCCcccc
Q 023914 101 VLKISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 101 ~~~~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
.+..+.||. ||...-+. .-..|..|..||..++-
T Consensus 115 ~~~~~~c~~~~cg~g~fma----~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLA----NHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEE----ECSSCEEESSSSSCCEE
T ss_pred EECcCcCCCccCCCceEec----ccCCCcccCCCceEEEe
Confidence 345789999 99986665 33458999999987754
No 98
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=80.56 E-value=0.6 Score=35.22 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=22.1
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
..+..|++||...-.. .+..|..||+..+.
T Consensus 14 KtH~lCrRCG~~sfH~-------qK~~CgkCGYpa~k 43 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL-------QKSTCGKCGYPAKR 43 (97)
T ss_dssp CCEECCTTTCSSCEET-------TSCCBTTTCTTTSS
T ss_pred CCCCcCCCCCCccCcC-------ccccCcccCCchHh
Confidence 4577999999995322 36799999976543
No 99
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=79.94 E-value=0.44 Score=37.21 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 93 AAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 93 ~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
+-..+..-....-+||.||+..... .+--.+.|..|+..
T Consensus 49 ~vkkiE~~q~akytCPfCGk~~vKR----~avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 49 RVAEIESEMNEDHACPNCGEDRVDR----QGTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHHHHSCEECSSSCCEEEEE----EETTEEEETTTCCE
T ss_pred HHHHHHHHhccCCcCCCCCCceeEe----cCceeEECCCCCCE
Confidence 3344545566677999999854333 22346899999976
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.86 E-value=0.39 Score=35.18 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=4.4
Q ss_pred CCcCCCCCC
Q 023914 106 FCQWCGGQT 114 (275)
Q Consensus 106 fC~~CG~~~ 114 (275)
|||.||+++
T Consensus 33 fCPeCgq~L 41 (81)
T 2jrp_A 33 LCPDCRQPL 41 (81)
T ss_dssp ECSSSCSCC
T ss_pred cCcchhhHH
Confidence 455555444
No 101
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=79.81 E-value=0.59 Score=39.57 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=23.5
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.++.||.||...-+. .-..|..|..|+..++
T Consensus 112 ~~~~Cp~Cg~g~fma----~h~dR~~CGkC~~t~~ 142 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMA----KHYDRHYCGKCHLTLK 142 (189)
T ss_dssp CSEECSTTCSSCEEE----ECSSCEEETTTCCCBC
T ss_pred ccccCCccCCCcccc----CccCCCccCCceeEEE
Confidence 468999999886565 2234789999998775
No 102
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=79.25 E-value=0.97 Score=31.49 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=21.0
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
.--|+.||...... .+....|+.||+..
T Consensus 21 ~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQ-----AKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCC-----SSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeecC-----CCCceECCCCCcEE
Confidence 34699999998765 34557899999643
No 103
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=79.19 E-value=0.63 Score=32.09 Aligned_cols=22 Identities=32% Similarity=0.821 Sum_probs=16.5
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
...||.||..... ...|+.||+
T Consensus 30 l~~c~~cG~~~~p---------H~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKLS---------HHICPNCGY 51 (60)
T ss_dssp CEECTTTCCEECT---------TBCCTTTCB
T ss_pred ceECCCCCCEeCC---------ceEcCCCCc
Confidence 4579999998422 268999994
No 104
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=78.95 E-value=0.55 Score=32.40 Aligned_cols=21 Identities=24% Similarity=0.718 Sum_probs=16.2
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (275)
...||.||.....+ .+|+.||
T Consensus 30 l~~c~~cGe~~~~H---------~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKPPH---------TVCPECG 50 (60)
T ss_dssp CEECTTTCCEECTT---------SCCTTTC
T ss_pred eeECCCCCCeecce---------EEcCCCC
Confidence 56799999974332 5799999
No 105
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=78.34 E-value=1 Score=33.70 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=21.7
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
....-.||.||+....+ .+--.+.|..|+..
T Consensus 33 q~~ky~CpfCgk~~vkR----~a~GIW~C~~Cg~~ 63 (92)
T 3iz5_m 33 QHSKYFCEFCGKFAVKR----KAVGIWGCKDCGKV 63 (92)
T ss_dssp HHSCBCCTTTCSSCBEE----EETTEEECSSSCCE
T ss_pred HhccccCcccCCCeeEe----cCcceEEcCCCCCE
Confidence 34445899999986554 23346899999864
No 106
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.20 E-value=1 Score=33.05 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=24.2
Q ss_pred HHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 97 SAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
+..=....-.||.||+....+ .+--.+.|..|+...
T Consensus 28 ie~~q~~ky~CpfCGk~~vkR----~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 28 VEAKMRQKHTCPVCGRKAVKR----ISTGIWQCQKCGATF 63 (83)
T ss_dssp HHHHHHSCBCCSSSCSSCEEE----EETTEEEETTTCCEE
T ss_pred HHHHhhcccCCCCCCCceeEe----cCcCeEEcCCCCCEE
Confidence 333345566899999996554 233468999998753
No 107
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=77.20 E-value=1.2 Score=36.96 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
..+|+.||.+|... + ....|+.||......
T Consensus 140 ~a~~~~~g~~m~~~-----~-~~~~cp~~g~~e~RK 169 (179)
T 3m7n_A 140 RALCSNCKTEMVRE-----G-DILKCPECGRVEKRK 169 (179)
T ss_dssp ECBCTTTCCBCEEC-----S-SSEECSSSCCEECCC
T ss_pred EecccccCCceEEC-----C-CEEECCCCCCEEEEe
Confidence 47899999999775 2 568999999876644
No 108
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=77.06 E-value=0.67 Score=33.06 Aligned_cols=25 Identities=28% Similarity=0.728 Sum_probs=18.2
Q ss_pred CcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 107 CQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
|| ||...... ++.....|+ ||...-
T Consensus 7 C~-C~~~~~~~----~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 7 CD-CGRALYSR----EGAKTRKCV-CGRTVN 31 (71)
T ss_dssp ET-TSCCEEEE----TTCSEEEET-TTEEEE
T ss_pred CC-CCCEEEEc----CCCcEEECC-CCCeee
Confidence 89 99987665 455567898 996543
No 109
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=76.07 E-value=1.2 Score=33.27 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 97 SAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
+..=....-.||.||+....+ .+--.+.|..|+..
T Consensus 29 ie~~q~~ky~CpfCgk~~vkR----~a~GIW~C~~C~~~ 63 (92)
T 3izc_m 29 LEIQQHARYDCSFCGKKTVKR----GAAGIWTCSCCKKT 63 (92)
T ss_dssp HHHHHHSCCCCSSSCSSCCEE----EETTEEECTTTCCE
T ss_pred HHHHHhcCCcCCCCCCceeee----cccceEEcCCCCCE
Confidence 333345566899999886444 23346899999864
No 110
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=75.04 E-value=3.4 Score=29.53 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
..+..-....-.||.||+..... .+--.+.|.+|+..
T Consensus 18 kkie~~q~~ky~C~fCgk~~vkR----~a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 18 RDVEIKHKKKYKCPVCGFPKLKR----ASTSIWVCGHCGYK 54 (73)
T ss_pred HHHHHhcccCccCCCCCCceeEE----EEeEEEECCCCCcE
Confidence 33444456667899999864443 23345899999976
No 111
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=74.16 E-value=1.1 Score=32.59 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=11.1
Q ss_pred cCCCCcCCCCCCcc
Q 023914 103 KISFCQWCGGQTKH 116 (275)
Q Consensus 103 ~~~fC~~CG~~~~~ 116 (275)
.-.|||.||..+-.
T Consensus 29 ~k~FCp~CGn~TL~ 42 (79)
T 2con_A 29 NRVFCGHCGNKTLK 42 (79)
T ss_dssp SCCSCSSSCCSCCE
T ss_pred ccccccccCcccce
Confidence 45899999998743
No 112
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.68 E-value=0.97 Score=30.17 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.3
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
...-||.||+... -.++.|..||+..
T Consensus 13 ~k~iCpkC~a~~~--------~gaw~CrKCG~~~ 38 (51)
T 3j21_g 13 KKYVCLRCGATNP--------WGAKKCRKCGYKR 38 (51)
T ss_dssp SEEECTTTCCEEC--------TTCSSCSSSSSCC
T ss_pred CCccCCCCCCcCC--------CCceecCCCCCcc
Confidence 4467999999831 2367999999873
No 113
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=73.66 E-value=0.31 Score=33.52 Aligned_cols=25 Identities=32% Similarity=0.933 Sum_probs=14.3
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVC 132 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~C 132 (275)
.+||.+||..+... .....++|.-|
T Consensus 33 ~r~CaRCGg~v~lr----~~k~~WvC~lC 57 (62)
T 2a20_A 33 TKFCARCGGRVSLR----SNKVMWVCNLC 57 (62)
T ss_dssp CEECTTSEEEEESS----TTCEEEEEHHH
T ss_pred CeeecccCCEeeec----CCeEEEEehhh
Confidence 35666666665554 34555666544
No 114
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=73.40 E-value=0.66 Score=34.01 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=24.6
Q ss_pred hhcCCCCcCCCCCCccc-----ccC-CC---------------ccceeecCCCCCccccCC
Q 023914 101 VLKISFCQWCGGQTKHE-----VPH-GE---------------EKMRAICTVCGKIAYQNP 140 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~-----~~~-~~---------------~~~~~~C~~Cg~~~y~~p 140 (275)
|....-||.||+++.-. +.. +. .+....||.||...|-+-
T Consensus 5 ~~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~ 65 (95)
T 2k5c_A 5 HHHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKT 65 (95)
T ss_dssp ---CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTS
T ss_pred ccccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhccc
Confidence 33456799999997421 000 00 125689999999998764
No 115
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=70.82 E-value=0.4 Score=41.29 Aligned_cols=94 Identities=19% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCC
Q 023914 86 TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165 (275)
Q Consensus 86 ~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~ 165 (275)
.......-|.+|.+-..+.++|..||.-++.. .|.-|. -++.+...++||++-.-++-+.+... ..
T Consensus 50 ~~~~~~~La~al~~~~~~i~~C~~C~nlte~~----------~C~IC~---d~~Rd~~~iCVVE~~~Dv~aiE~t~~-y~ 115 (212)
T 3vdp_A 50 PLDEVRSLSQAIIEAKEKLRYCKICFNITDKE----------VCDICS---DENRDHSTICVVSHPMDVVAMEKVKE-YK 115 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHCEECTTTCCEESSS----------SCHHHH---CTTSEEEEEEEESSHHHHHHHHTTSC-CC
T ss_pred CHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCC----------cCCCCC---CCCCCCCEEEEECCHHHHHHHHhhCc-cc
Confidence 33444556667777788999999999875322 355553 45556777888876555666665543 58
Q ss_pred CceeeeeEEeeC--CCCHHHHHHHHHHHHh
Q 023914 166 GLWTLPAGYMEI--GESAAEGAIRETWEEA 193 (275)
Q Consensus 166 g~w~lPgG~vE~--GEs~eeAa~REl~EEt 193 (275)
|.|.+.+|.+.| |-.+++--..++.+-+
T Consensus 116 G~YhVLgG~iSPldGigP~~L~i~~L~~Ri 145 (212)
T 3vdp_A 116 GVYHVLHGVISPIEGVGPEDIRIKELLERV 145 (212)
T ss_dssp EEEEECSSCCBTTTTBCGGGTTHHHHHHHH
T ss_pred eEEEecCCccCccCCCCccccCHHHHHHHH
Confidence 999999999975 5566666666665544
No 116
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=70.31 E-value=1.8 Score=33.45 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=8.2
Q ss_pred CCCCcCCCCC
Q 023914 104 ISFCQWCGGQ 113 (275)
Q Consensus 104 ~~fC~~CG~~ 113 (275)
++.||.||+.
T Consensus 2 ~M~Cp~Cg~~ 11 (133)
T 3o9x_A 2 HMKCPVCHQG 11 (133)
T ss_dssp CCBCTTTSSS
T ss_pred CcCCCcCCCC
Confidence 5689999887
No 117
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=69.99 E-value=1.6 Score=39.55 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=20.6
Q ss_pred cCCCCcCCCCCCcccccC--C-Ccc-ceeecCCCCCcc
Q 023914 103 KISFCQWCGGQTKHEVPH--G-EEK-MRAICTVCGKIA 136 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~--~-~~~-~~~~C~~Cg~~~ 136 (275)
...|||.||+.-...... | .+| ...+|.-|+...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 368999999997554322 1 233 345777777543
No 118
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=68.54 E-value=1.3 Score=33.77 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=21.3
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
....-.||.||+....+ .+--.+.|..|+..
T Consensus 33 q~aky~CpfCgk~~vKR----~a~GIW~C~kCg~~ 63 (103)
T 4a17_Y 33 QHAKYGCPFCGKVAVKR----AAVGIWKCKPCKKI 63 (103)
T ss_dssp HHSCEECTTTCCEEEEE----EETTEEEETTTTEE
T ss_pred hhcCCCCCCCCCceeee----cCcceEEcCCCCCE
Confidence 44556799999885444 23346899999853
No 119
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=67.08 E-value=2.2 Score=37.85 Aligned_cols=28 Identities=21% Similarity=0.566 Sum_probs=21.4
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
+-|++||++...... .+..-..||.|..
T Consensus 246 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVV--AGRGTHYCPRCQR 273 (273)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTCC
T ss_pred CCCCCCCCeEEEEEE--CCCCeEECCCCCC
Confidence 679999999876544 2456789999963
No 120
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=66.98 E-value=2.6 Score=37.31 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=21.7
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
+-|+.||++...... .+..-..||.|..
T Consensus 236 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVV--AGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEES--SSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCCC
Confidence 559999999876654 3456789999975
No 121
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=66.54 E-value=5.2 Score=33.19 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=24.0
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcE
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM 142 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~ 142 (275)
-+.=||.|.+++... +...+.|+.|+.. ++|..
T Consensus 41 ~Y~ACp~CnKKV~~~-----~~g~~~CekC~~~--~~~~~ 73 (172)
T 3u50_C 41 YYYRCTCQGKSVLKY-----HGDSFFCESCQQF--INPQV 73 (172)
T ss_dssp EEEECTTSCCCEEEE-----TTTEEEETTTTEE--CCCEE
T ss_pred EehhchhhCCEeeeC-----CCCeEECCCCCCC--CCceE
Confidence 356799999997632 2346899999998 65543
No 122
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=66.00 E-value=2.4 Score=37.49 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=20.8
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (275)
+-|++||++...... .+..-..||.|.
T Consensus 241 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKH--AQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCC
Confidence 559999999876644 245678999996
No 123
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=65.58 E-value=2.5 Score=37.42 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=21.4
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
+-|++||++...... .+..-..||.|..
T Consensus 243 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKV--AGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEE--CCCceEECCCCCC
Confidence 559999999876644 2456789999974
No 124
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=65.06 E-value=2.6 Score=37.15 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (275)
+-|+.||++...... .+..-..||.|.
T Consensus 235 ~pC~~CG~~I~~~~~--~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTL--SSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEE--TTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEE--CCCCeEECCCCC
Confidence 469999999876644 245678999996
No 125
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=64.31 E-value=2 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.512 Sum_probs=21.1
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.|+.||.+-...... ++..-..|.+||...-
T Consensus 2 lC~~C~~peT~l~~~-~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKE-GRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEE-TTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEe-CCcEEEEhhcCCCccc
Confidence 499999994333222 3556788999997643
No 126
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=63.66 E-value=2.2 Score=29.34 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=17.6
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
..+.|+.||.-+- ...|+.||....
T Consensus 5 ~mr~C~~CgvYTL----------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGLYTL----------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCCEES----------SSBCSSSCSBCB
T ss_pred hceeCCCCCCEec----------cccCcCCCCcCC
Confidence 5678999987652 246899986543
No 127
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=63.62 E-value=2.8 Score=29.85 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=5.1
Q ss_pred CCCcCCCCC
Q 023914 105 SFCQWCGGQ 113 (275)
Q Consensus 105 ~fC~~CG~~ 113 (275)
.-||.||+.
T Consensus 3 m~Cp~Cg~~ 11 (78)
T 3ga8_A 3 MKCPVCHQG 11 (78)
T ss_dssp CBCTTTSSS
T ss_pred eECCCCCCC
Confidence 456666654
No 128
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=62.18 E-value=2.3 Score=29.26 Aligned_cols=25 Identities=36% Similarity=0.794 Sum_probs=17.7
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
..+.|+.||.-+- ...|+.||...+
T Consensus 4 ~mr~C~~Cg~YTL----------k~~CP~CG~~t~ 28 (60)
T 2aus_D 4 RIRKCPKCGRYTL----------KETCPVCGEKTK 28 (60)
T ss_dssp CCEECTTTCCEES----------SSBCTTTCSBCE
T ss_pred cceECCCCCCEEc----------cccCcCCCCccC
Confidence 5678999987652 246888986654
No 129
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=61.76 E-value=4.3 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=19.8
Q ss_pred CCCCcCCCCC---CcccccCCCccceeecCCCCCccc
Q 023914 104 ISFCQWCGGQ---TKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 104 ~~fC~~CG~~---~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
...||.||+. +... . ..| -.+|..||.+.-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D--~-~~G-~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVER--F-SEG-DVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCC--S-SSC-SCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEE--C-CCC-CEecCCCCeEcc
Confidence 4589999996 3222 1 222 369999998664
No 130
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=61.04 E-value=3.9 Score=34.26 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=20.7
Q ss_pred hcCCCCcCCCCC-CcccccCCCccceeecCCCCCcccc
Q 023914 102 LKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 102 ~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
....+||.||+. ...... ...--.+|..||.+.-.
T Consensus 19 n~~~~CPECGs~~t~IV~D--~erGE~VCsdCGLVLEE 54 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVER--FSEGDVVCALCGLVLSD 54 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEE--GGGTEEEETTTCBBCCC
T ss_pred ccCeECcCCCCcCCeEEEe--CCCCEEEEcCCCCCcCC
Confidence 334589999983 222211 12224799999976543
No 131
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=61.00 E-value=5 Score=32.54 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 94 AVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 94 a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.-.|.++...+--|+.||+|-...... +.-+-..|.+||...-
T Consensus 94 ~~~L~~yI~~yVlC~~C~sPdT~L~k~-~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 94 ANKLKKYIKEYVICPVCGSPDTKIIKR-DRFHFLKCEACGAETP 136 (148)
T ss_dssp HHHHHHHHHHHSSCSSSCCTTCCCCBS-SSSBCCCCSSSCCCCC
T ss_pred HHHHHHHHHHEEECCCCCCcCcEEEEe-CCEEEEEecCCCCCcc
Confidence 345667888899999999995443333 3456789999997643
No 132
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=59.38 E-value=5.1 Score=35.93 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=22.6
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
.-|++||.+.........+..-..|+.|.+-+
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCccccc
Confidence 47999999987654321245678999998754
No 133
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.01 E-value=4.4 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=19.6
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
.|.-|.+||...-.. ....|.+||+
T Consensus 16 tH~lCrRCG~~syH~-------qK~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRVSYNV-------KKGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSBCEET-------TTTEETTTCT
T ss_pred ceeeecccCcchhcc-------ccccccccCC
Confidence 588999999995333 3578999997
No 134
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=58.25 E-value=4.5 Score=27.22 Aligned_cols=32 Identities=34% Similarity=0.760 Sum_probs=23.2
Q ss_pred hhhcCCCCcCCCCCCcccccCCCccceeecC--CCCCcccc
Q 023914 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICT--VCGKIAYQ 138 (275)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~--~Cg~~~y~ 138 (275)
|....--||.|.+++... + ...+|+ .|+ ..||
T Consensus 6 ~lL~iL~CP~c~~~L~~~----~--~~L~C~~~~c~-~~YP 39 (56)
T 2kpi_A 6 GLLEILACPACHAPLEER----D--AELICTGQDCG-LAYP 39 (56)
T ss_dssp SCTTSCCCSSSCSCEEEE----T--TEEEECSSSCC-CEEE
T ss_pred HHHhheeCCCCCCcceec----C--CEEEcCCcCCC-cEEe
Confidence 445567899999998775 2 347899 898 4454
No 135
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=57.53 E-value=3.4 Score=35.74 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=21.4
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
...+.-||.||+.-..... +.++ ..|.+||..
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~--~dg~-~~C~~Cg~~ 42 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLF--SDGH-TFCYVCEKW 42 (255)
T ss_dssp EEEEECCSSSCCSSCEEEE--TTSC-EEETTTCCE
T ss_pred eecCCcCCCCCCCCCceEe--CCCC-eecccCCCc
Confidence 3457899999996333322 2344 899999964
No 136
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=56.73 E-value=0.59 Score=40.65 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=50.6
Q ss_pred CCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCC
Q 023914 86 TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165 (275)
Q Consensus 86 ~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~ 165 (275)
.......-|.+|..-..+.++|..||.-++. -.|+-|.. ++.+...++||++-.-++-+.+... ..
T Consensus 36 ~~~~~~~La~al~~~~~~i~~C~~C~nlte~----------~~C~IC~d---~~Rd~~~iCVVE~~~Dv~aiE~t~~-y~ 101 (228)
T 1vdd_A 36 PREDIERLASALLEAKRDLHVCPICFNITDA----------EKCDVCAD---PSRDQRTICVVEEPGDVIALERSGE-YR 101 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHCEECSSSCCEESS----------SSCHHHHC---SSSCTTEEEEESSHHHHHHTTTTSS-CC
T ss_pred CHHHHHHHHHHHHHHHhcCeEcCCCCCCcCC----------CcCCCCCC---CCcCCCeEEEECCHHHHHHHHHhcc-cc
Confidence 3344455677777888899999999988532 24666653 3334445566665444555555543 48
Q ss_pred CceeeeeEEeeC
Q 023914 166 GLWTLPAGYMEI 177 (275)
Q Consensus 166 g~w~lPgG~vE~ 177 (275)
|.|.+.+|.+.+
T Consensus 102 G~YhVLgG~lSP 113 (228)
T 1vdd_A 102 GLYHVLHGVLSP 113 (228)
T ss_dssp SEEEECSSCCBG
T ss_pred eEEEecCCccCc
Confidence 999999998763
No 137
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=53.88 E-value=18 Score=29.79 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCCcC--CCCCCcccccCCCccceeecCCCCCccccCCcE
Q 023914 104 ISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM 142 (275)
Q Consensus 104 ~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~ 142 (275)
+.-||. |.+++... +...+.|+.|+.. +++|..
T Consensus 43 Y~aC~~~~CnKKv~~~-----~~g~~~CekC~~~-~~~~~~ 77 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQ-----QNGLYRCEKCDTE-FPNFKY 77 (181)
T ss_dssp EEBCCSTTCCCBCEEE-----TTTEEEETTTTEE-ESSCCE
T ss_pred ECCCCchhcCCccccC-----CCCeEECCCCCCc-CCCceE
Confidence 678999 99997643 2235799999854 555544
No 138
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=53.03 E-value=5.3 Score=32.00 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=25.2
Q ss_pred HHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 96 HSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 96 ~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
.|.++...+--|+.||+|-...... ..-+-..|.+||...
T Consensus 95 ~L~~yI~~yVlC~~C~sPdT~l~k~-~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 95 LMERFLKAYVECSTCKSLDTILKKE-KKSWYIVCLACGAQT 134 (139)
T ss_dssp TTTTTSSCCSSCCSSSSSCCCSCSS-CSTTTSSCCC-----
T ss_pred HHHHHHHHeeECCCCCCcCcEEEEe-CCeEEEEecCCCCCC
Confidence 3556888899999999995443332 345678999999754
No 139
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=52.47 E-value=4.9 Score=26.05 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=22.2
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
..+.|..||.......-.+..+. ..|.+||..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 35789999988655443344444 789999963
No 140
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.70 E-value=10 Score=31.04 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=31.0
Q ss_pred HHHHhhhhcCCCCcCCCCCCccccc-CCCccceeecCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHEVP-HGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~~~-~~~~~~~~~C~~Cg~~~y 137 (275)
-.|.++...+--|+.|+.+-..... ....-+-..|.+||...-
T Consensus 94 ~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 94 DMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp HHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred HHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 4577889999999999999443322 113457789999997654
No 141
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.31 E-value=10 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=20.6
Q ss_pred cCCCCcC--CCCCCcccccCCCccceeecC-----CCCCc
Q 023914 103 KISFCQW--CGGQTKHEVPHGEEKMRAICT-----VCGKI 135 (275)
Q Consensus 103 ~~~fC~~--CG~~~~~~~~~~~~~~~~~C~-----~Cg~~ 135 (275)
..+|||+ ||..+... .+.....|+ .|++.
T Consensus 24 ~~~~CP~p~C~~~v~~~----~~~~~v~C~~~~~~~C~~~ 59 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPE----PDQRKVTCEGGNGLGCGFA 59 (80)
T ss_dssp SSCCCCSSSCCCCCCCC----SCTTSBCTTSSSTTCCSCC
T ss_pred CcEECCCCCCCcccEEC----CCCCcCCCCCCCCCCCCCe
Confidence 3789999 99987553 234457887 78864
No 142
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=49.93 E-value=6.6 Score=28.42 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEE--EEEecc-CC-CCCceeeee
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKIL--LCKRKI-EP-SYGLWTLPA 172 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iL--L~rr~~-~p-~~g~w~lPg 172 (275)
-|-.|=.-+ .+-.+..|+.||.. +..-|.+-++.++++- +-++.. +. .+..|++|.
T Consensus 17 rC~aCf~~t-------~~~~k~FCp~CGn~----TL~Rvsvsvd~~G~~~~hl~~n~~~~n~RG~~ySlPk 76 (79)
T 2con_A 17 RCHGCFKTT-------SDMNRVFCGHCGNK----TLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSSGP 76 (79)
T ss_dssp ECSSSCCEE-------SCSSCCSCSSSCCS----CCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCCCCC
T ss_pred EecccceEC-------CCcccccccccCcc----cceEEEEEECCCCcEEEeccCCccccccCCCCccCCC
Confidence 366665543 23457899999973 3344555566666533 433333 32 244688884
No 143
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=49.51 E-value=5.2 Score=32.33 Aligned_cols=24 Identities=25% Similarity=0.604 Sum_probs=16.4
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
.|..||+..... .....||.||..
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCB
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCc
Confidence 599999886432 123489999875
No 144
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=49.19 E-value=3.2 Score=28.19 Aligned_cols=26 Identities=27% Similarity=0.783 Sum_probs=19.5
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
..|.-|.+||...-.. ....|.+||+
T Consensus 15 ktH~~CrRCG~~syH~-------qK~~Ca~CGy 40 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYHT-------KKKVCSSCGF 40 (57)
T ss_dssp CCEEECTTTCSEEEET-------TTTEETTTCT
T ss_pred CccccccccCChhhhc-------cccccccccC
Confidence 4577899999985332 3568999996
No 145
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.03 E-value=9.2 Score=25.94 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=22.2
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCC--CCCc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTV--CGKI 135 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~--Cg~~ 135 (275)
.+.+-||.|+.+.+.. ++=....|.. |+..
T Consensus 4 ~~~k~CP~C~~~Iek~----~GCnhmtC~~~~C~~~ 35 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKD----GGCNHMVCRNQNCKAE 35 (60)
T ss_dssp CCCCCCTTTCCCCSSC----CSCCSSSCCSSGGGSC
T ss_pred ccceECcCCCCeeEeC----CCCCcEEECCCCcCCE
Confidence 3568999999998776 4556778877 7643
No 146
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=48.30 E-value=4.9 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.633 Sum_probs=23.7
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
++--|+ ||.++... +.-....|.+||...|.+
T Consensus 47 RFFkC~-C~~Rt~sl----~r~P~~~C~~Cg~~~wer 78 (92)
T 2kwq_A 47 RFFKCP-CGNRTISL----DRLPKKHCSTCGLFKWER 78 (92)
T ss_dssp EEEECT-TSCEEEES----SSSCCSCCTTTCSCCCEE
T ss_pred EEEECC-CCCceeEe----eeCCCCCCCCCCCCceEE
Confidence 345697 99998665 344566899999988765
No 147
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=47.07 E-value=5.7 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=27.3
Q ss_pred cCCCCCccHHHHHHHHHhhhh-c-------------CCCCcCCCCCCcccccCCCcccee-ecCCCCCc
Q 023914 82 NQDATSSHPSSAAVHSAGNVL-K-------------ISFCQWCGGQTKHEVPHGEEKMRA-ICTVCGKI 135 (275)
Q Consensus 82 ~~~~~~~~~~~~a~~l~~w~~-~-------------~~fC~~CG~~~~~~~~~~~~~~~~-~C~~Cg~~ 135 (275)
.+..-+...+..|.....-.. . .-.|..||...... .... .||.||..
T Consensus 37 ~ls~v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 37 ERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp TTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred hhccccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 355555555666666554333 1 23688888775443 1234 68888754
No 148
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=46.33 E-value=13 Score=27.00 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=13.3
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
..||.|++++... ++ ...|..|+.
T Consensus 3 ~~CP~C~~~l~~~-----~~-~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GD-TAHCETCAK 26 (81)
T ss_dssp CCCSSSCSCCEEC-----SS-EEECTTTCC
T ss_pred CCCCCCCCccccC-----CC-ceECccccc
Confidence 4677777776543 22 334666654
No 149
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=45.77 E-value=7.1 Score=25.96 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=18.3
Q ss_pred CCCCcCCCCCCccc----ccCCCcc--ceeecCCCCCcc
Q 023914 104 ISFCQWCGGQTKHE----VPHGEEK--MRAICTVCGKIA 136 (275)
Q Consensus 104 ~~fC~~CG~~~~~~----~~~~~~~--~~~~C~~Cg~~~ 136 (275)
..-||.||+.-... .-..+.+ .-..|.+||+..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 35699999864321 0011111 346899998753
No 150
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=44.45 E-value=8.5 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=17.6
Q ss_pred CCCCcCCCC-CCcccccCCCccceeecCCCCCc
Q 023914 104 ISFCQWCGG-QTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 104 ~~fC~~CG~-~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
..+||.||+ +...... ...--.+|..||.+
T Consensus 21 ~~~Cp~C~~~~~~lv~D--~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVER--FSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEE--GGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEE--CCCCcEEeCCCCCC
Confidence 458999997 3222211 12223799999954
No 151
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=44.37 E-value=6 Score=32.91 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCcCCCCCCcccccC---------------CCccceeecCCCCCccccCC
Q 023914 106 FCQWCGGQTKHEVPH---------------GEEKMRAICTVCGKIAYQNP 140 (275)
Q Consensus 106 fC~~CG~~~~~~~~~---------------~~~~~~~~C~~Cg~~~y~~p 140 (275)
||+.|+..+-..... -.....+.|.+||.++..++
T Consensus 124 yc~~c~~~~~e~~f~~~dl~~~l~~~~~~f~~~~~~rtc~~Cg~~~~~~~ 173 (174)
T 1yfu_A 124 YCDACGHLVHRVEVQLKSIVTDLPPLFESFYASEDKRRCPHCGQVHPGRA 173 (174)
T ss_dssp ECTTTCCEEEEEEECCSCHHHHSHHHHHHHHTCHHHHBCTTTCCBCCCSC
T ss_pred EcCCCCCEEEEEEEEEechhHhHHHHHHHHhcCHhhccCCCCCCcCCCCC
Confidence 999998865322110 01335689999999887664
No 152
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=43.40 E-value=7.5 Score=32.22 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=31.2
Q ss_pred HHHHHhhhhcCCCCcCCCCCCcccccC-CCccceeecCCCCCccc
Q 023914 94 AVHSAGNVLKISFCQWCGGQTKHEVPH-GEEKMRAICTVCGKIAY 137 (275)
Q Consensus 94 a~~l~~w~~~~~fC~~CG~~~~~~~~~-~~~~~~~~C~~Cg~~~y 137 (275)
.-.|..+...+--|+.||.|-...... ....+-..|.+||...-
T Consensus 86 ~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 86 QDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred HHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 345667888899999999995443331 13556789999997654
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.32 E-value=9.8 Score=32.24 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=23.7
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
.|... ..|..|+.+.... ..+.+|..||.+.=.
T Consensus 157 ~W~~~-~~C~~C~~~F~~~------~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 157 NWADG-RVCHRCRVEFTFT------NRKHHCRNCGQVFCG 189 (220)
T ss_dssp CCCCC-SBCTTTCCBCCSS------SCCEECTTTCCEECS
T ss_pred cCCCC-CccCCCCCccCCc------ccccccCCcCCEECh
Confidence 46543 7999999987543 356789999976544
No 154
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=42.73 E-value=5.4 Score=25.44 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=20.7
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
+.|..||.......-.|..|. ..|.+||-.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 579999988654433344455 789999965
No 155
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.38 E-value=12 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=23.6
Q ss_pred hhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
.|... ..|..|+.+.... ..+.+|..||.+.=.
T Consensus 7 ~W~~~-~~C~~C~~~F~~~------~RrHHCR~CG~v~C~ 39 (73)
T 1vfy_A 7 DWIDS-DACMICSKKFSLL------NRKHHCRSCGGVFCQ 39 (73)
T ss_dssp CCCCC-SBCTTTCCBCBTT------BCCEECTTTCCEECG
T ss_pred cCccC-CcccCCCCccCCc------cccccCCCCCEEEcc
Confidence 46654 5899999987554 356789999976543
No 156
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.02 E-value=11 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=18.4
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
..||.|+++++.. ++ ...|..|+..
T Consensus 33 ~~CP~Cq~eL~~~-----g~-~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCPQCQHVLDQD-----NG-HARCRSCGEF 57 (101)
T ss_dssp CBCSSSCSBEEEE-----TT-EEEETTTCCE
T ss_pred ccCccCCCcceec-----CC-EEECccccch
Confidence 7999999998754 33 4568888763
No 157
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=40.51 E-value=7.7 Score=26.84 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=23.1
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
....|..||.......-.|..|. ..|.+||-.+
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~ 38 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYY 38 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHH
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHH
Confidence 35789999998665544444555 7899999543
No 158
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=40.30 E-value=13 Score=25.96 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=15.1
Q ss_pred CcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 107 CQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
||.|+......- .....-.|..||..
T Consensus 10 Cp~C~niq~VFS---hA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 10 CPDCEHEQVIFD---HPSTIVKCIICGRT 35 (66)
T ss_dssp CTTTCCEEEEES---SCSSCEECSSSCCE
T ss_pred CCCCCCceEEEe---cCceEEEcccCCCE
Confidence 777777654441 34455667777643
No 159
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=39.62 E-value=7.6 Score=31.06 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
-.|.++...+--|+.||+|-...... +.-+-..|.+||...-
T Consensus 93 ~~L~~yI~~yVlC~~C~sPdT~l~k~-~r~~~l~C~ACGa~~~ 134 (138)
T 1nee_A 93 ERIEDYVNKFVICHECNRPDTRIIRE-GRISLLKCEACGAKAP 134 (138)
T ss_dssp HHHHHHHTHHHHHTCCSSCSSCCEEE-TTTTEEECSTTSCCCC
T ss_pred HHHHHHHhhEEECCCCCCcCcEEEEc-CCeEEEEccCCCCCcc
Confidence 44667888888999999994433232 3457789999997643
No 160
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.08 E-value=9.8 Score=31.66 Aligned_cols=35 Identities=17% Similarity=0.533 Sum_probs=22.0
Q ss_pred CCcCCCCCCcccccCC---------------CccceeecCCCCCccccCC
Q 023914 106 FCQWCGGQTKHEVPHG---------------EEKMRAICTVCGKIAYQNP 140 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~---------------~~~~~~~C~~Cg~~~y~~p 140 (275)
||+.|+..+-.....- .....+.|.+||.++...|
T Consensus 126 yc~~c~~~~~e~~f~~~dl~~ql~~~~~~f~~~~e~rtc~~CG~~~~~~~ 175 (176)
T 1zvf_A 126 YCSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRTCFHCKTLNYARP 175 (176)
T ss_dssp ECTTTCCEEEEEECCSSSTTHHHHHHHHHHHTCHHHHBCTTTCCBCCSSC
T ss_pred EcCCCCCEEEEEEEEEechhHhHHHHHHHHhcChhhccCCCCCCcCCCCC
Confidence 9999988653221100 1335689999998877443
No 161
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=38.85 E-value=14 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=15.4
Q ss_pred CCCcCCCCC-Cccccc-CCCccceeecCCCCCc
Q 023914 105 SFCQWCGGQ-TKHEVP-HGEEKMRAICTVCGKI 135 (275)
Q Consensus 105 ~fC~~CG~~-~~~~~~-~~~~~~~~~C~~Cg~~ 135 (275)
--||.||+. ...... -..+.-...|..||..
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~ 56 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEE 56 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCe
Confidence 357777777 222111 1122334577777753
No 162
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=38.07 E-value=20 Score=32.17 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhcCCC-------CcCCCCCCcc
Q 023914 91 SSAAVHSAGNVLKISF-------CQWCGGQTKH 116 (275)
Q Consensus 91 ~~~a~~l~~w~~~~~f-------C~~CG~~~~~ 116 (275)
-....+|++|.++.-| |+.||+++..
T Consensus 61 ~~~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~ 93 (295)
T 2f4m_A 61 DFLLLELLHWFKEEFFRWVNNIVCSKCGGETRS 93 (295)
T ss_dssp HHHHHHHHHHHHHTTCEECSSCCCTTTCCCCEE
T ss_pred HHHHHHHHHHHHhcCCEEeCCCCCcccCCcccc
Confidence 3456889999877433 9999988755
No 163
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.66 E-value=15 Score=25.37 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=11.8
Q ss_pred CcCCCCCCcccccCCCccceeecCCCCC
Q 023914 107 CQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
||.|+......- .....-.|..||.
T Consensus 18 Cp~C~~~q~VFS---ha~t~V~C~~Cgt 42 (63)
T 3j20_W 18 CIDCGNEQIVFS---HPATKVRCLICGA 42 (63)
T ss_dssp CSSSCCEEEEES---SCSSCEECSSSCC
T ss_pred CCCCCCeeEEEe---cCCeEEEccCcCC
Confidence 555555543331 2334445555554
No 164
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=37.24 E-value=19 Score=27.02 Aligned_cols=18 Identities=6% Similarity=-0.123 Sum_probs=13.6
Q ss_pred hhhcCCCCcCCCCCCccc
Q 023914 100 NVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 100 w~~~~~fC~~CG~~~~~~ 117 (275)
|....--||.|.+++...
T Consensus 4 ~LLdILaCP~cK~pL~l~ 21 (97)
T 2k5r_A 4 KLLHLLCSPDTRQPLSLL 21 (97)
T ss_dssp TTCSSCCCCTTSSCCEEC
T ss_pred HHhhheECCCCCCccccc
Confidence 445566899999998764
No 165
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=36.48 E-value=9.6 Score=30.26 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=19.3
Q ss_pred cCCCCCccHHHHHHHHHhhhhc-------------CCCCcCCCCCCcc
Q 023914 82 NQDATSSHPSSAAVHSAGNVLK-------------ISFCQWCGGQTKH 116 (275)
Q Consensus 82 ~~~~~~~~~~~~a~~l~~w~~~-------------~~fC~~CG~~~~~ 116 (275)
.+..-+...+..|...+.=... .-.|..||.....
T Consensus 35 ~ls~v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 35 ELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp TTCCCCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEETTTCCEEEG
T ss_pred HHhhhhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECCCCCCEEec
Confidence 3455555555566555532211 2468888887544
No 166
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=36.12 E-value=12 Score=37.51 Aligned_cols=26 Identities=35% Similarity=0.730 Sum_probs=19.7
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCC---CC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV---CG 133 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~---Cg 133 (275)
-..||.||+++... +++...+|++ |.
T Consensus 405 P~~CP~Cgs~l~~~----~~~~~~rC~n~~~Cp 433 (671)
T 2owo_A 405 PTHCPVCGSDVERV----EGEAVARCTGGLICG 433 (671)
T ss_dssp CSBCTTTCCBEEEC----TTCSCEEECCGGGCH
T ss_pred CCCCCCCCCEeEEe----cCCEEEECCCCCCCH
Confidence 47899999998654 4566778983 75
No 167
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=35.66 E-value=11 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=17.1
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
-+.|..||+..-. .+..|+.|+...
T Consensus 47 ~~rC~~CG~~~~P--------Pr~~Cp~C~s~~ 71 (145)
T 3irb_A 47 GSKCSKCGRIFVP--------ARSYCEHCFVKI 71 (145)
T ss_dssp EEECTTTCCEEES--------CCSEETTTTEEC
T ss_pred EEEeCCCCcEEcC--------chhhCcCCCCCc
Confidence 4679999887422 256799998543
No 168
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=35.46 E-value=26 Score=31.97 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.3
Q ss_pred HHHHHHhhhhcC-------CCCcCCCCCC
Q 023914 93 AAVHSAGNVLKI-------SFCQWCGGQT 114 (275)
Q Consensus 93 ~a~~l~~w~~~~-------~fC~~CG~~~ 114 (275)
--.+|++|.++. .=|+.||+++
T Consensus 101 ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~ 129 (335)
T 1x3z_A 101 LVKELLRYFKQDFFKWCNKPDCNHCGQNT 129 (335)
T ss_dssp HHHHHHHHHHHTTCEECSSCCCSSSCSSC
T ss_pred HHHHHHHHHHhcCCEeeCCCCccccCCCc
Confidence 457899998764 4599999874
No 169
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.10 E-value=23 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=24.1
Q ss_pred hhhhc--CCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 99 GNVLK--ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 99 ~w~~~--~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.|..+ ...|..|+.+.... ..+.+|..||.+.=
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~------~RrHHCR~CG~vfC 96 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVT------VRRHHCRQCGNIFC 96 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSS------SCCEECTTTCCEEC
T ss_pred ccccCCCCCCCcCcCCccccc------cccccCCCCCeEEC
Confidence 58644 57999999987543 35678999987643
No 170
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=34.61 E-value=7.2 Score=27.22 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=21.9
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
....|..||.......-.+..|. ..|.+||..+
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~ 40 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFL 40 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHH
Confidence 35789999987654433333444 7899998643
No 171
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=33.96 E-value=14 Score=36.38 Aligned_cols=26 Identities=35% Similarity=0.730 Sum_probs=19.6
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCC---CC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV---CG 133 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~---Cg 133 (275)
-.+||.||+++... +++...+|++ |.
T Consensus 405 P~~CP~Cgs~~~~~----~~~~~~rC~n~~~Cp 433 (586)
T 4glx_A 405 PTHCPVCGSDVERV----EGEAVARCTGGLICG 433 (586)
T ss_dssp CSBCTTTCCBEECC----TTCSCCEESCGGGCH
T ss_pred CCcCCCCCCchhhh----hcccccEeCCCcCcH
Confidence 46899999998765 5566778874 75
No 172
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=33.91 E-value=19 Score=27.78 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=19.9
Q ss_pred cCCCCcCCCCCCcccccC----CCc---cceeecCCCCCc
Q 023914 103 KISFCQWCGGQTKHEVPH----GEE---KMRAICTVCGKI 135 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~----~~~---~~~~~C~~Cg~~ 135 (275)
...||..||..+..-... ..+ .....|..||+.
T Consensus 64 KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 64 KRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYI 103 (120)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCE
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 346999999987543110 011 245678888865
No 173
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.71 E-value=16 Score=30.01 Aligned_cols=21 Identities=38% Similarity=0.903 Sum_probs=14.1
Q ss_pred CcCCCCCCcccccCCCccceeecCCCCC
Q 023914 107 CQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
|+.||...... ..-.||.||.
T Consensus 141 C~~CG~i~~~~-------~p~~CP~Cg~ 161 (170)
T 3pwf_A 141 CPICGYTAVDE-------APEYCPVCGA 161 (170)
T ss_dssp CTTTCCEEESC-------CCSBCTTTCC
T ss_pred eCCCCCeeCCC-------CCCCCCCCCC
Confidence 99999875422 1238999984
No 174
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=33.69 E-value=86 Score=23.37 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=12.9
Q ss_pred CCeEEEEEeccCCCCCceeeee
Q 023914 151 DKKILLCKRKIEPSYGLWTLPA 172 (275)
Q Consensus 151 ~~~iLL~rr~~~p~~g~w~lPg 172 (275)
+-+.|++|.+ .+|.-.+|.
T Consensus 72 gykylvirhp---dggthtvpk 90 (131)
T 2x5c_A 72 GYKYLVIRHP---DGGTHTVPK 90 (131)
T ss_dssp SCEEEEEECT---TSCEEECCT
T ss_pred CcEEEEEECC---CCCcccccc
Confidence 4478888765 467777774
No 175
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=33.39 E-value=23 Score=22.28 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=13.8
Q ss_pred HHhhhhcCCCCcCCCCCC
Q 023914 97 SAGNVLKISFCQWCGGQT 114 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~ 114 (275)
+..|.+....||.|.+++
T Consensus 36 i~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 36 VDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp HHHTTTTCCSCSSSCCCS
T ss_pred HHHHHHcCCcCcCCCCEe
Confidence 467877788899988765
No 176
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=33.28 E-value=19 Score=26.16 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=16.0
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
-||.|+..+...- .....-.|..||.+
T Consensus 36 kCp~C~~~q~VFS---ha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 36 KCPGCLNITTVFS---HAQTAVTCESCSTI 62 (82)
T ss_dssp ECTTSCSCEEEES---BCSSCCCCSSSCCC
T ss_pred ECCCCCCeeEEEe---cCCeEEEccccCCE
Confidence 3777777765442 34455667777654
No 177
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=33.27 E-value=8 Score=28.78 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=20.2
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
...|..|.+||...-.. ....|.+||+.
T Consensus 13 ~KtHtlCrRCG~~syH~-------qK~~Ca~CGyp 40 (94)
T 4a18_A 13 QKTHTLCRRCGKATYHK-------QKLRCAACGYP 40 (94)
T ss_dssp CCCEEECTTTCSEEEET-------TTTEESSSCGG
T ss_pred CCccceecCcCchhhhh-------ccccccccCCc
Confidence 34577899999985333 34689999963
No 178
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=33.09 E-value=24 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=22.4
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
-||.||+.... +....+....|..|+...+..
T Consensus 7 ~c~~c~~~n~~--p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 7 VCTACMATNRL--PEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp ECTTTCCEEEE--ESSCSCSCCBCTTTCCBTTCC
T ss_pred ECcccccccCC--CCcccccCCcchhcCCccccC
Confidence 49999998533 333455677899998876643
No 179
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=32.99 E-value=13 Score=25.01 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=13.7
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCG 133 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg 133 (275)
...||.||.....+ .+|++ |
T Consensus 27 l~~c~~cGe~~l~H---------~vc~~-G 46 (56)
T 3r8s_0 27 LSVDKTSGEKHLRH---------HITAD-G 46 (56)
T ss_dssp EEECTTTCCEEETT---------BCCTT-S
T ss_pred eeECCCCCCeeccc---------EECCC-C
Confidence 36899999874333 57877 6
No 180
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=32.85 E-value=9.2 Score=37.88 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=0.4
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV 131 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~ 131 (275)
-..||.||+++... . +++...+|++
T Consensus 415 P~~CP~Cgs~l~~~-~--~~~~~~rC~n 439 (615)
T 3sgi_A 415 PTTCPECGSPLAPE-K--EGDADIRCPN 439 (615)
T ss_dssp C---------------------------
T ss_pred CCCCCCCCCeeeec-C--CCCEEEEcCC
Confidence 46799999998652 1 3455678875
No 181
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=32.82 E-value=34 Score=31.90 Aligned_cols=43 Identities=9% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCCCcC--CCCCCcccccCCCccceeecCCCCCcc-ccCCcEEEEEEEeeC
Q 023914 104 ISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIA-YQNPKMVVGCLIEHD 151 (275)
Q Consensus 104 ~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~-y~~p~~~V~viI~~~ 151 (275)
+.-||. |++++... +.-.+.|+.|+... -+.++..+-+.+.++
T Consensus 308 Y~aC~~~~C~kkv~~~-----~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~ 353 (444)
T 4gop_C 308 YTACASEGCNKKVNLD-----HENNWRCEKCDRSYATPEYRYILSTNVADA 353 (444)
T ss_dssp EEECCSTTCCCBEEEC-----TTSCEEETTTTEEESSCEEEECEEEEEEET
T ss_pred EccCCcccCCCccccC-----CCccEECCCCCCcCccccEEEEEEEEEEeC
Confidence 567999 99997543 22357999999653 223344444444443
No 182
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.39 E-value=34 Score=25.97 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEE
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVV 144 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V 144 (275)
.-.|-.||-... . .-+..-.||.|+...-..|...+
T Consensus 67 p~~C~~CG~~F~-~----~~~kPsrCP~CkSe~Ie~P~F~I 102 (105)
T 2gmg_A 67 PAQCRKCGFVFK-A----EINIPSRCPKCKSEWIEEPRFKL 102 (105)
T ss_dssp CCBBTTTCCBCC-C----CSSCCSSCSSSCCCCBCCCCEEE
T ss_pred CcChhhCcCeec-c----cCCCCCCCcCCCCCccCCcceee
Confidence 457999999972 1 12344689999987776666543
No 183
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=32.30 E-value=9.3 Score=28.43 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=20.2
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
...|.-|-+||...-.. ....|.+||+
T Consensus 13 ~KtHtlCrRCG~~syH~-------qK~~Ca~CGy 39 (94)
T 3iz5_l 13 NKTHTLCVRCGRRSFHL-------QKSTCSSCGY 39 (94)
T ss_dssp CCSEEECTTTCSEEEEG-------GGTEETTTCS
T ss_pred CCccceecCcCchhhhc-------ccccccccCC
Confidence 45678899999985333 3468999996
No 184
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.02 E-value=28 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=21.5
Q ss_pred Hhhhhc--CCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 98 AGNVLK--ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 98 ~~w~~~--~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
..|..+ ...|..|+.+.... ..+.+|..||.+.
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~------~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSIS------RRKHHCRNCGHIF 45 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTT------BCCEECTTTCCEE
T ss_pred CccccCccCCcccCcCCcccCc------cccccCCCCCCEE
Confidence 468655 46899999997543 3567899998764
No 185
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.87 E-value=22 Score=23.36 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=16.2
Q ss_pred HHHHhhhhcCCCCcCCCCCCc
Q 023914 95 VHSAGNVLKISFCQWCGGQTK 115 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~ 115 (275)
.=+..|......||.|.+++.
T Consensus 47 ~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 47 QCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp HHHHHHHHHCSSCTTTCCCCC
T ss_pred HHHHHHHHcCCCCCCCCCccC
Confidence 445678777889999998864
No 186
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=31.49 E-value=21 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=14.8
Q ss_pred CcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 107 CQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
||.|+......- .....-.|..||.+
T Consensus 35 Cp~C~n~q~VFS---hA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 35 CAQCQNIQMIFS---NAQSTIICEKCSAI 60 (81)
T ss_dssp CSSSCCEEEEET---TCSSCEECSSSCCE
T ss_pred CCCCCCeeEEEe---cCccEEEccCCCCE
Confidence 777776654441 34455666666643
No 187
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.09 E-value=18 Score=31.30 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCCcCCCCCCcccccC--CCccceeecCCCCCccccCCc
Q 023914 104 ISFCQWCGGQTKHEVPH--GEEKMRAICTVCGKIAYQNPK 141 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~--~~~~~~~~C~~Cg~~~y~~p~ 141 (275)
..-|+.|.-.+...... -.+.....|+.||++.|..+.
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEGA 237 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSCC
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCcc
Confidence 46899998877432110 012345799999999886543
No 188
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=31.01 E-value=25 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=24.3
Q ss_pred HHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
..|-+-.=++.-||.|+.++. ++|.+++=+.|.+
T Consensus 21 qelHdlnCs~NiCPYC~nRls------~eGl~RHV~~CPK 54 (77)
T 2l7x_A 21 AEMHDLNCSYNICPYCASRLT------SDGLARHVTQCPK 54 (77)
T ss_dssp HHHHHHHHTTTCCTTTCCCCC------TTTHHHHHTTCSH
T ss_pred HHHHHcCCCcccChhhhccCC------ccchhhhcccCcc
Confidence 345566778899999999973 3566666666653
No 189
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=30.44 E-value=29 Score=26.92 Aligned_cols=33 Identities=21% Similarity=0.524 Sum_probs=19.7
Q ss_pred cCCCCcCCCCCCccccc-----CCCc--cceeecCCCCCc
Q 023914 103 KISFCQWCGGQTKHEVP-----HGEE--KMRAICTVCGKI 135 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~-----~~~~--~~~~~C~~Cg~~ 135 (275)
...||..||+.+..-.. .+.. .....|..||+.
T Consensus 59 KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~ 98 (123)
T 2k3r_A 59 KRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHI 98 (123)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEE
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 34699999998754211 1110 245678888865
No 190
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.06 E-value=34 Score=24.36 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=23.0
Q ss_pred hhhhc--CCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 99 GNVLK--ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 99 ~w~~~--~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.|..+ ...|..|+.+.... ..+.+|..||.+.=
T Consensus 7 ~W~pd~~~~~C~~C~~~F~~~------~RrHHCR~CG~vfC 41 (84)
T 1x4u_A 7 GRYPTNNFGNCTGCSATFSVL------KKRRSCSNCGNSFC 41 (84)
T ss_dssp CSCSCCCCSSCSSSCCCCCSS------SCCEECSSSCCEEC
T ss_pred ccccCCCCCcCcCcCCccccc------hhhhhhcCCCcEEC
Confidence 46544 46899999997543 35678998887643
No 191
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.02 E-value=20 Score=26.25 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=17.6
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
-||.|+..+...- .....-.|..||.+.
T Consensus 38 kCp~C~~~~~VFS---hA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 38 KCQGCFNITTVFS---HSQTVVVCPGCQTVL 65 (86)
T ss_dssp ECTTTCCEEEEET---TCSSCCCCSSSCCCC
T ss_pred ECCCCCCeeEEEe---cCCcEEEccCCCCEe
Confidence 4888887765542 344556777777543
No 192
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.01 E-value=31 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=23.8
Q ss_pred hhh--hcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 99 GNV--LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 99 ~w~--~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.|. .....|..|+.+.... ..+.+|..||.+.=
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~------~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTT------VRRHHCRNCGYVLC 48 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTT------SCCEECTTTCCEEC
T ss_pred ccccCCCCCCCcCcCCccccc------hhcccccCCCcEEC
Confidence 474 3467899999997554 35678999987653
No 193
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.42 E-value=32 Score=26.67 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=20.8
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
..|..|+.+.... ..+.+|..||.+.=
T Consensus 20 ~~C~~C~~~Fs~~------~RkHHCR~CG~ifC 46 (120)
T 1y02_A 20 PSCKSCGAHFANT------ARKQTCLDCKKNFC 46 (120)
T ss_dssp CCCTTTCCCCSSG------GGCEECTTTCCEEC
T ss_pred CcccCcCCccccc------cccccCCCCCCeeC
Confidence 7899999997543 35678999998653
No 194
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.79 E-value=24 Score=30.03 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=23.4
Q ss_pred hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914 100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN 139 (275)
Q Consensus 100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~ 139 (275)
|... ..|..|+.+.... ..+.+|..||.+.=..
T Consensus 161 W~~~-~~C~~C~~~F~~~------~RrhHCR~CG~v~C~~ 193 (226)
T 3zyq_A 161 WVDA-EECHRCRVQFGVM------TRKHHCRACGQIFCGK 193 (226)
T ss_dssp CCCC-SBCTTTCCBCBTT------BCCEECTTTCCEECTT
T ss_pred cccC-CCCcCcCCCCCcc------ccccccCCCcCEeChh
Confidence 6543 5899999987544 3467899999765443
No 195
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.21 E-value=17 Score=30.63 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=15.1
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
.|+.||-... +.....||.||..
T Consensus 173 ~C~~CG~i~~-------g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 173 LCPICGYIHK-------GEDFEKCPICFRP 195 (202)
T ss_dssp ECSSSCCEEE-------SSCCSBCTTTCCB
T ss_pred EECCCCCEEc-------CcCCCCCCCCCCC
Confidence 5999987642 1223689988853
No 196
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=27.59 E-value=23 Score=33.27 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=21.0
Q ss_pred CCCCcCCCCCCcccc-----cCCCc--cceeecCCCCCcc
Q 023914 104 ISFCQWCGGQTKHEV-----PHGEE--KMRAICTVCGKIA 136 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~-----~~~~~--~~~~~C~~Cg~~~ 136 (275)
..-||.||+....++ |.-.. -....|++||+..
T Consensus 220 ~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 220 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred cccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 357999999875432 21100 1357899999865
No 197
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.26 E-value=21 Score=25.08 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=19.1
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecC-CCCCc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICT-VCGKI 135 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~-~Cg~~ 135 (275)
..+.||.||++..-.. ....++.|. .|..+
T Consensus 8 ~~~~CP~Cgkp~~W~~---~~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGE---ISPFRPFCSKRCQLI 38 (68)
T ss_dssp CEEECTTTCCEEECSS---SSSCCSSSSHHHHHH
T ss_pred CcCcCCCCCCcccccc---cCCCCcccCHHHHhh
Confidence 3467999999976431 234667886 36543
No 198
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.16 E-value=27 Score=31.49 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=15.3
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
++-+|+.||+.=.. .|..|+.||..
T Consensus 207 R~l~Cs~C~t~W~~--------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHY--------VRIKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEEC--------CTTSCSSSCCC
T ss_pred EEEEeCCCCCEEee--------cCcCCcCCCCC
Confidence 46677777776322 34577777764
No 199
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.10 E-value=35 Score=24.74 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
...|..|+.+.... ..+.+|..||.+.=.
T Consensus 9 ~~~C~~C~~~F~~~------~RrHHCR~CG~vfC~ 37 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF------KKEYGCKNCGRAFCN 37 (88)
T ss_dssp CSBCTTTCCBCCSS------SCEEECSSSCCEEET
T ss_pred CCCCcCcCCcccCc------cccccCCCCCCEECh
Confidence 45799999987544 356789999876543
No 200
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.90 E-value=25 Score=24.44 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.4
Q ss_pred CCCCcCCCCCCccc
Q 023914 104 ISFCQWCGGQTKHE 117 (275)
Q Consensus 104 ~~fC~~CG~~~~~~ 117 (275)
.+|||.|.+.+...
T Consensus 49 kKycp~c~kHtlhk 62 (66)
T 3bbo_3 49 RKFCPYCYKHTIHG 62 (66)
T ss_dssp CCCCCSSSSCCCCC
T ss_pred EccCCCCCCeeeEE
Confidence 48999999987554
No 201
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.56 E-value=41 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=21.8
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
....|..|+.+.... ..+.+|..||.+.=.
T Consensus 19 ~~~~C~~C~~~F~~~------~RrhhCr~CG~v~C~ 48 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT------KRRHHCRACGKVFCG 48 (90)
T ss_dssp GCCBCTTTCCBCCSS------SCCEECTTTCCEECG
T ss_pred cCCcCcCCCCcccch------hhCccccCCCCEECC
Confidence 457899999987543 346789999976543
No 202
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=25.58 E-value=24 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=20.5
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
....|..||.......-.+.+.....|.+||-.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~ 39 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEGIQCNACFIY 39 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCCccchHHHHH
Confidence 357899999986554332111223789999954
No 203
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=25.29 E-value=23 Score=35.35 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=17.9
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCC--CC
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTV--CG 133 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~--Cg 133 (275)
-..||.||+++ . +++...+|++ |.
T Consensus 403 P~~CP~Cgs~l--~----~g~~~~~C~n~~Cp 428 (667)
T 1dgs_A 403 PEACPECGHRL--V----KEGKVHRCPNPLCP 428 (667)
T ss_dssp CSBCTTTCCBC--E----EETTEEECCCTTCG
T ss_pred CCCCCCCCCCc--c----CCCeEEEeCCCCCh
Confidence 47899999998 2 3456678885 65
No 204
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=25.22 E-value=34 Score=21.34 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=13.7
Q ss_pred HHhhhhcCCCCcCCCCCC
Q 023914 97 SAGNVLKISFCQWCGGQT 114 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~ 114 (275)
+..|......||.|.+++
T Consensus 36 i~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 36 YEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp HHHHHHHTCCCTTSCCSS
T ss_pred HHHHHHcCCcCCCCCCcC
Confidence 456777778999998775
No 205
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.11 E-value=17 Score=27.22 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.9
Q ss_pred CCCCcCCCCCCc
Q 023914 104 ISFCQWCGGQTK 115 (275)
Q Consensus 104 ~~fC~~CG~~~~ 115 (275)
..-||.||+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 567999999864
No 206
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=24.97 E-value=49 Score=20.69 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=21.1
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
....||..||+.+--. ......|..|+...
T Consensus 9 ~~pt~C~~C~~~l~g~-----~~qg~~C~~C~~~~ 38 (50)
T 1ptq_A 9 MSPTFCDHCGSLLWGL-----VKQGLKCEDCGMNV 38 (50)
T ss_dssp SSCCBCTTTCCBCCSS-----SSCEEEETTTCCEE
T ss_pred CCCCCcCCCCceeecc-----CCccCEeCCCCCeE
Confidence 3568999999987321 23457899998654
No 207
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=24.50 E-value=33 Score=25.41 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHhCCcccc
Q 023914 178 GESAAEGAIRETWEEARADVEV 199 (275)
Q Consensus 178 GEs~eeAa~REl~EEtGl~v~~ 199 (275)
|-+..||+ +++.|+.|+.+..
T Consensus 79 ~~sf~eA~-~~La~~~gi~~~~ 99 (103)
T 1d0q_A 79 GIPFVEAA-KRLAAKAGVDLSV 99 (103)
T ss_dssp TCCHHHHH-HHHHHHHTCCCGG
T ss_pred CCCHHHHH-HHHHHHhCCCCCc
Confidence 45666665 6799999988753
No 208
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.40 E-value=37 Score=30.95 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
...+|..|+..+.-. ...+.+|..||...-.
T Consensus 356 ~~t~C~~C~~~~~g~-----~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGT-----FYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSS-----SSCEEEETTTCCEECG
T ss_pred CCCCCccccchhcee-----CCCCCCCCCCcCccch
Confidence 458999999987322 2345689999976544
No 209
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.29 E-value=43 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
...-|+.||.+.... ......|+.|+...-+
T Consensus 9 ~~~~Cw~C~~~~~~~-----~~~~~fC~~c~~~q~~ 39 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPG-----REDRFFCPQCRALQAP 39 (207)
T ss_dssp --CBCSSSCCBCCSS-----CSCCCBCTTTCCBCCC
T ss_pred CCCCCCCCCCCcccc-----cccccccccccccCCC
Confidence 457899999874211 2345789999976543
No 210
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=24.20 E-value=45 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=21.5
Q ss_pred hhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
.....||-.||.-+ .. ....|..|+...-.
T Consensus 32 ~~~pt~C~~C~~~l-~~-------qG~kC~~C~~~cHk 61 (72)
T 2fnf_X 32 RGGPGWCDLCGREV-LR-------QALRCANCKFTCHS 61 (72)
T ss_dssp CSSCCBCTTTSSBC-SS-------CCEECTTSSCEECT
T ss_pred CCCCcchhhhhHHH-Hh-------CcCccCCCCCeech
Confidence 35568899999998 22 23689999976543
No 211
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.83 E-value=50 Score=22.96 Aligned_cols=42 Identities=10% Similarity=-0.100 Sum_probs=26.6
Q ss_pred hhhhcCCCCcCCCCCCcccccCC-CccceeecCCCCCccccCC
Q 023914 99 GNVLKISFCQWCGGQTKHEVPHG-EEKMRAICTVCGKIAYQNP 140 (275)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~~~~~~-~~~~~~~C~~Cg~~~y~~p 140 (275)
.||..---|..|+..+.....-. +..-..+|..|-...|..|
T Consensus 37 ~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 37 FFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred eeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 58888888888888875542110 1123467887776666554
No 212
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.53 E-value=16 Score=25.40 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=11.2
Q ss_pred hhhhcCCCCcCCCCCCc
Q 023914 99 GNVLKISFCQWCGGQTK 115 (275)
Q Consensus 99 ~w~~~~~fC~~CG~~~~ 115 (275)
.||...-.|..|+.++.
T Consensus 36 ~wH~~CF~C~~C~~~L~ 52 (81)
T 1v6g_A 36 TYHPDCFVCAVCRLPFP 52 (81)
T ss_dssp EECTTTSSCSSSCCCCC
T ss_pred eeCccCCccccCCCCCC
Confidence 46666666777766654
No 213
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.41 E-value=33 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=23.5
Q ss_pred hhhhcCCCCcCCCCCCcc-cccCCCccceeecCCCCCccc
Q 023914 99 GNVLKISFCQWCGGQTKH-EVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 99 ~w~~~~~fC~~CG~~~~~-~~~~~~~~~~~~C~~Cg~~~y 137 (275)
.||...--|..|+.++.. .... ..+....|..|....+
T Consensus 26 ~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 26 HYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAAR 64 (73)
T ss_dssp CBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTS
T ss_pred CCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhh
Confidence 588888888888888751 1110 1223567888765444
No 214
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=23.35 E-value=36 Score=24.10 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=16.8
Q ss_pred HHHHhhhhcCCCCcCCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~ 117 (275)
..+..|...+..||.||.++...
T Consensus 39 ~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 39 SIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp HHHHHHHHHCSBCTTTCCBCCGG
T ss_pred HHHHHHHhcCCCCCCCcCCCChH
Confidence 44556666678999999997543
No 215
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.17 E-value=36 Score=23.12 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=14.9
Q ss_pred HHhhhhcCCCCcCCCCCCccc
Q 023914 97 SAGNVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~~~~ 117 (275)
+..|......||.|.+++...
T Consensus 45 i~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 45 IVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp THHHHTTTCSCTTTCCCCCCS
T ss_pred HHHHHHcCCcCcCcCCccCCc
Confidence 456767778899998886543
No 216
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.85 E-value=30 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=16.9
Q ss_pred CCcCCCCCCccc----ccCCCccceeecCCCCCccc
Q 023914 106 FCQWCGGQTKHE----VPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 106 fC~~CG~~~~~~----~~~~~~~~~~~C~~Cg~~~y 137 (275)
-|+.||...... ..+ .+.....|+.||...-
T Consensus 16 ~C~~C~k~F~~~~~l~~~H-~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFD-PMTGTFRCTFCHTEVE 50 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEE-TTTTEEBCSSSCCBCE
T ss_pred cCCCCCchhccHHHhHhhc-CCCCCEECCCCCCccc
Confidence 488888753211 011 2334578888886543
No 217
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=22.72 E-value=31 Score=23.06 Aligned_cols=23 Identities=9% Similarity=-0.214 Sum_probs=18.2
Q ss_pred HHHHhhhhcCCCCcCCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~ 117 (275)
..+..|...+..||.+|.++...
T Consensus 29 ~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 29 SLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp HHHHHHHHHHSBCTTTCCBCCGG
T ss_pred HHHHHHHHhCCCCcCCcCCCChh
Confidence 56777877777899999998654
No 218
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=22.60 E-value=44 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=18.3
Q ss_pred CCCcCCCCCCccccc----CCCcc--ceeecCCCCCcc
Q 023914 105 SFCQWCGGQTKHEVP----HGEEK--MRAICTVCGKIA 136 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~----~~~~~--~~~~C~~Cg~~~ 136 (275)
.-||.||+.-....- ..+++ .-..|..||+..
T Consensus 138 ~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 138 FTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred cCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 369999987542211 01222 235788998753
No 219
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=22.37 E-value=23 Score=23.70 Aligned_cols=14 Identities=0% Similarity=-0.111 Sum_probs=11.0
Q ss_pred CCCCcCCCCCCccc
Q 023914 104 ISFCQWCGGQTKHE 117 (275)
Q Consensus 104 ~~fC~~CG~~~~~~ 117 (275)
.+|||.|...+...
T Consensus 38 kKycp~~~kHtlhk 51 (55)
T 2zjr_1 38 KKYDPVAKKHVVFR 51 (55)
T ss_pred EccCCCCCCEEeEE
Confidence 47999999887554
No 220
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.33 E-value=69 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=22.3
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ 138 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~ 138 (275)
....||-.|+..+--. ......|..|+...-.
T Consensus 26 ~~pt~C~~C~~~lwGl-----~kqg~~C~~C~~~~Hk 57 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGL-----NKQGYKCRQCNAAIHK 57 (83)
T ss_dssp SSCCCCSSSCCCCCSS-----SCCEEEETTTCCEECT
T ss_pred CCCcChhhcChhhccc-----cccccccCCcCCeeCh
Confidence 3568999999987321 2345789999876544
No 221
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.24 E-value=45 Score=22.48 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHhhhhcCCCCcCCCCCCcc
Q 023914 97 SAGNVLKISFCQWCGGQTKH 116 (275)
Q Consensus 97 l~~w~~~~~fC~~CG~~~~~ 116 (275)
+..|......||.|.+++..
T Consensus 53 i~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 53 VDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp HHHHHHHCSSCTTTCCCCCC
T ss_pred HHHHHHcCCcCcCcCCcCCC
Confidence 45677778899999887643
No 222
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=21.88 E-value=26 Score=34.27 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=19.3
Q ss_pred CCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914 104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA 136 (275)
Q Consensus 104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~ 136 (275)
.++|+.||.+.........+.....|+.||...
T Consensus 34 ~~~c~~c~~~~~~~~~~~~~~~~~~c~~c~~~~ 66 (681)
T 2pzi_A 34 KRFCWNCGRPVGRSDSETKGASEGWCPYCGSPY 66 (681)
T ss_dssp GCBCTTTCCBCSCC-----CCSEEECTTTCCEE
T ss_pred cccCccCCCcCCCcccCCCcccCCcCCCCCCcc
Confidence 468999999864332111222346799998743
No 223
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.79 E-value=39 Score=21.70 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=16.3
Q ss_pred HHHHhhhhcCCCCcCCCCCCcc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKH 116 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~ 116 (275)
.=+..|......||.|.+++..
T Consensus 35 ~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 35 QCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp HHHHHHHHHCSBCTTTCCBCTT
T ss_pred HHHHHHHHcCCCCCCCCccCCc
Confidence 3455677778899999988654
No 224
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=21.49 E-value=59 Score=21.73 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=21.7
Q ss_pred hcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914 102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY 137 (275)
Q Consensus 102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y 137 (275)
....||..|+..+--. ......|..|+...-
T Consensus 18 ~~pt~C~~C~~~l~Gl-----~~qg~~C~~C~~~~H 48 (65)
T 3uej_A 18 MSPTFCDHCGSLLWGL-----VKQGLKCEDCGMNVH 48 (65)
T ss_dssp SSCCBCTTTCCBCCSS-----SSCEEEETTTCCEEC
T ss_pred CCCCcccccChhhhcc-----CceeeECCCCCCeEc
Confidence 3568999999986321 234578999997654
No 225
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=21.43 E-value=25 Score=23.22 Aligned_cols=14 Identities=0% Similarity=-0.069 Sum_probs=10.9
Q ss_pred CCCCcCCCCCCccc
Q 023914 104 ISFCQWCGGQTKHE 117 (275)
Q Consensus 104 ~~fC~~CG~~~~~~ 117 (275)
.+|||.|+..+...
T Consensus 36 kKycp~~~khtlhk 49 (52)
T 2ftc_P 36 LHYDPVVKQRVLFV 49 (52)
T ss_pred EccCCCCCceEeEE
Confidence 48999999886543
No 226
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=21.40 E-value=45 Score=22.58 Aligned_cols=22 Identities=9% Similarity=-0.089 Sum_probs=15.9
Q ss_pred HHHHhhhhc-CCCCcCCCCCCcc
Q 023914 95 VHSAGNVLK-ISFCQWCGGQTKH 116 (275)
Q Consensus 95 ~~l~~w~~~-~~fC~~CG~~~~~ 116 (275)
.-+..|... ...||.|++++..
T Consensus 33 ~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 33 SSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp HHHHHHHTTTCCBCTTTCCBCSS
T ss_pred HHHHHHHHHCcCCCCCCcCCCCh
Confidence 345667665 7889999998743
No 227
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=21.36 E-value=43 Score=24.60 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=17.0
Q ss_pred HHHHhhhhcCCCCcCCCCCCcc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKH 116 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~ 116 (275)
..+..|...+..||.||.++..
T Consensus 54 ~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 54 SIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp HHHHHHTTSCSBCSSSCCBCCT
T ss_pred HHHHHHHHcCCCCCCCCCCCCh
Confidence 4566676678899999999754
No 228
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.18 E-value=25 Score=29.17 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=14.8
Q ss_pred CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI 135 (275)
Q Consensus 106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~ 135 (275)
.|+.||....-. ...-.||.||..
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 399999774321 111289999864
No 229
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=21.15 E-value=45 Score=24.39 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=17.2
Q ss_pred HHHHhhhhcCCCCcCCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~ 117 (275)
..+..|...+..||.||.++...
T Consensus 48 ~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 48 STIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp HHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HHHHHHHHhCCCCCCCCCCCChh
Confidence 45566766678999999997543
No 230
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=21.05 E-value=40 Score=22.23 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=16.6
Q ss_pred HHHHhhhhcCCCCcCCCCCCcc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKH 116 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~ 116 (275)
.=+..|......||.|.+++..
T Consensus 42 ~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 42 QCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp HHHHHHHHHCSBCTTTCCBCCC
T ss_pred HHHHHHHHcCCCCCCCCCccCh
Confidence 3456787778899999988754
No 231
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=20.69 E-value=46 Score=21.94 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=17.3
Q ss_pred HHHHhhhhcCCCCcCCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~ 117 (275)
.=+..|......||.|.+++...
T Consensus 42 ~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 42 VCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp HHHHHHHHHCSBCTTTCSBSCSC
T ss_pred HHHHHHHHcCCCCcCcCccccCc
Confidence 34567877788899999887554
No 232
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.22 E-value=55 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=18.1
Q ss_pred CCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK 134 (275)
Q Consensus 105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~ 134 (275)
.|||.|+.+..... .+.....|..|..
T Consensus 3 ~~CpiC~k~Y~~~~---~~~~MIqCd~C~~ 29 (183)
T 3lqh_A 3 NFCPLCDKCYDDDD---YESKMMQCGKCDR 29 (183)
T ss_dssp CBCTTTCCBCTTCC---TTCCEEECTTTCC
T ss_pred CcCCCCcCccCCcc---cCCCeEECCCCCc
Confidence 68999998864431 1234568999974
No 233
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.17 E-value=48 Score=22.17 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=17.4
Q ss_pred HHHHhhhhcCCCCcCCCCCCccc
Q 023914 95 VHSAGNVLKISFCQWCGGQTKHE 117 (275)
Q Consensus 95 ~~l~~w~~~~~fC~~CG~~~~~~ 117 (275)
.=+..|......||.|.+++...
T Consensus 41 ~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 41 SCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp HHHHHHHHHCSSCTTTCCCCCSS
T ss_pred HHHHHHHHcCCcCCCcCcccCcc
Confidence 45667777788999999987554
Done!