BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023915
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/269 (69%), Positives = 230/269 (85%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MISA CR F+EAK+L+ D E Y+K D+V+LN+MLCAYCR G+MESVM +M+K+DE A
Sbjct: 383 MISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQA 442
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPDYNTFHILIKYF KEK+++LAY+T +DMH KGH+ EEELCSSLI+HLGK+RA +EA
Sbjct: 443 VSPDYNTFHILIKYFIKEKLHLLAYQTTLDMHSKGHRLEEELCSSLIYHLGKIRAQAEAF 502
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180
SVYNMLRYSKR++CK LHEKILHILI G LLKDAY+VVKDN++ IS P +KKF AF+
Sbjct: 503 SVYNMLRYSKRTICKELHEKILHILIQGNLLKDAYIVVKDNAKMISQPTLKKFGRAFMIS 562
Query: 181 GNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSST 240
GNINLVNDV+K +H +G++IDQ F IAI+RYI++ +KKELLL+LL+WM GQGYVVDSST
Sbjct: 563 GNINLVNDVLKVLHGSGHKIDQVQFEIAISRYISQPDKKELLLQLLQWMPGQGYVVDSST 622
Query: 241 RNLILKNSHLFGRQLIADILSKQHMKSKS 269
RNLILKNSH+FGR LIA+ILSK H+ S+
Sbjct: 623 RNLILKNSHMFGRLLIAEILSKHHVASRP 651
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 4/217 (1%)
Query: 4 AFC-RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS 62
A C G EEA+ + + ++ +S+L +Y GD + +M ++ + +
Sbjct: 245 AICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLV 304
Query: 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122
P+ L+K + K ++ + + ++ G+ E L+ L K EA S+
Sbjct: 305 PNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSI 364
Query: 123 YNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS---ESISHPAIKKFASAFVR 179
++ ++ + ++ L K K+A + +D+ E + A+ R
Sbjct: 365 FDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCR 424
Query: 180 LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER 216
G + V +MK + D FHI I +I E+
Sbjct: 425 AGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFIKEK 461
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 114/253 (45%), Gaps = 16/253 (6%)
Query: 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI 61
I C+ G + A ++ G + K DV+ N+++ C+ + + K+ +
Sbjct: 258 IQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGL 317
Query: 62 SPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121
PD T++ LI +CK M LA R + D G P++ SLI L + AL+
Sbjct: 318 EPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALA 377
Query: 122 VYNMLRYSKRSMCKALHEKIL--HILISG----KLLKDAYVVVKDNSESISHPAIKKF-- 173
++N ++ K + ++ + LI G ++ +A + + SE P ++ F
Sbjct: 378 LFN------EALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431
Query: 174 -ASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232
+ ++G ++ + ++K + + GY D F+I I Y + + K E L++L+ M
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY-STQLKMENALEILDVMLDN 490
Query: 233 GYVVDSSTRNLIL 245
G D T N +L
Sbjct: 491 GVDPDVYTYNSLL 503
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 30/174 (17%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
DV NS+L C+T E VM + + E +P+ TF+IL++ C+ + A +
Sbjct: 495 DVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLL 554
Query: 89 VDMHRKGHQPEEELCSSLIFHLGK----------MRAHSEALSV------YNMLRYS-KR 131
+M K P+ +LI K R EA V YN++ ++
Sbjct: 555 EEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTE 614
Query: 132 SMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINL 185
+ + EK+ ++ L D Y + F + GN+NL
Sbjct: 615 KLNVTMAEKLFQEMVDRCLGPDGY-------------TYRLMVDGFCKTGNVNL 655
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ GC +A L +K D+ N ++ Y ME+ + ++ + +
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491
Query: 61 ISPDYNTFHILIKYFCKEKMY---ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
+ PD T++ L+ CK + + Y+TMV+ KG P + L+ L + R
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVE---KGCAPNLFTFNILLESLCRYRKLD 548
Query: 118 EALSV 122
EAL +
Sbjct: 549 EALGL 553
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 36/134 (26%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL- 59
++ + CR +EA L + + K D V +++ +C+ GD++ + RK++E
Sbjct: 537 LLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY 596
Query: 60 -----------------------------------AISPDYNTFHILIKYFCKEKMYILA 84
+ PD T+ +++ FCK L
Sbjct: 597 KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLG 656
Query: 85 YRTMVDMHRKGHQP 98
Y+ +++M G P
Sbjct: 657 YKFLLEMMENGFIP 670
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 5 FCRGGCFEEAKQLAGDFEAKYDKYD----VVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ R G +EA + FE + D YD V N+++ +G + V ++ +
Sbjct: 86 YGRKGKVQEAVNV---FE-RMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+PD +F I +K FCK A R + +M +G + +++ + +E
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGY 201
Query: 121 SVYNMLRYSKRSMCKALHEKILHIL 145
++ + S S+C + K+L +L
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVL 226
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C G A L + K K +V+L N+++ G + + ++ E
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
+ P+ TF+IL+ CK A + M KG+ P+
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G EEA +L G+FEA D V +++ AYC++G+M+ +++++
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+ P TF++L+ FC M + + M KG P +SL+
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 99/248 (39%), Gaps = 37/248 (14%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS FC+ G EA +L + K + D V ++ YC+ G M+ V + +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP+ T+ LI CKE A + +M + G QP +S++ L K EA+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180
L + N++++++ + A+ +
Sbjct: 512 K-----------------------------LVGEFEAAGLNADTVTYTTL---MDAYCKS 539
Query: 181 GNINLVNDVMKAIHATGYRIDQGIFHIAIARYI--AEREKKELLLKLLEWMTGQGYVVDS 238
G ++ +++K + G + F++ + + E E KLL WM +G ++
Sbjct: 540 GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE---KLLNWMLAKGIAPNA 596
Query: 239 STRNLILK 246
+T N ++K
Sbjct: 597 TTFNSLVK 604
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
C+ G +EA L E K DV+ ++++ YCR G+++ V ++ + + P+
Sbjct: 257 CQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 316
Query: 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRAHSE 118
+ +I C+ A +M R+G P+ + ++LI G +RA S+
Sbjct: 317 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 103/255 (40%), Gaps = 18/255 (7%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ +CR G ++ +L + K K + + S++ CR + ++
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 346
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD + LI FCK A + +MH + P+ +++I ++ EA
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406
Query: 121 SVYNMLRYSKRSMCKALHEKILHI--LISGKL----LKDAYVVVKDNSESISHPAIKKFA 174
+++ + CK L + LI+G +KDA+ V ++ P + +
Sbjct: 407 KLFHEM------FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460
Query: 175 S---AFVRLGNINLVNDVMKAIHATGYRIDQGIF-HIAIARYIAEREKKELLLKLLEWMT 230
+ + G+++ N+++ + G + IF + +I + + E +KL+
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 518
Query: 231 GQGYVVDSSTRNLIL 245
G D+ T ++
Sbjct: 519 AAGLNADTVTYTTLM 533
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 56/99 (56%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I CR EA +L K K D+V++N+++ +C G+M+ +++++D ++
Sbjct: 438 LIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMS 497
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
I+PD T++ L++ C E + A M +M R+G +P+
Sbjct: 498 INPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C G FEEA++L G+ + + K D + N+++ Y + GD + V ++ L
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLG 567
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115
+P T++ L+K K + LA + +M +G P + S+I + + A
Sbjct: 568 FNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDA 622
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI+ C+ G ++AK G E K +V N+++ + G +E ++ ++
Sbjct: 231 MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKG 290
Query: 61 ISPDYNTFHILIKYFCKE 78
PD T++ ++ + C E
Sbjct: 291 FQPDMQTYNPILSWMCNE 308
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ F G E A+ + + ++K + D+ N +L C G V+R++ E+
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIG 322
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
+ PD +++ILI+ +A+ +M ++G P
Sbjct: 323 LVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVP 360
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 113/250 (45%), Gaps = 8/250 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ C EA Q+ +K + D+V + ++ +YC+ ++ M + R++
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T++ L+ FC+ A +M +G P L+ L ++AL
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKF---ASAF 177
++ ++ S+ ++ ++ I+H + + + DA+ + S+ P + +
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELL--LKLLEWMTGQGYV 235
+ G+++ + + + + G D ++I I ++ L+ ++L+E M G+
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG---GSGLISSVELIEEMKVCGFS 592
Query: 236 VDSSTRNLIL 245
DSST +++
Sbjct: 593 ADSSTIKMVI 602
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + C+ G F++A L + E K K DVV +S++ C G + ++R++
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD TF LI F KE + A +M +G P+ +SLI K EA
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEAN 370
Query: 121 SVYNML 126
+++++
Sbjct: 371 QMFDLM 376
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 53/124 (42%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC G EA L + D+V +++++ C G + + ++ ++ E
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ ++ CK LA M + + S +I L K + +AL
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 121 SVYN 124
S++N
Sbjct: 266 SLFN 269
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ FC+G E ++D+ + M+ YCR + V+ + +L
Sbjct: 88 LVLGFCKG------------MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLG 135
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD TF L+ FC E A + M +P+ S+LI L SEAL
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 121 SVYN-MLRYS 129
+ + M+ Y
Sbjct: 196 VLIDRMVEYG 205
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92
N + A RT + V+ + ++ I D T I+I +C++K + A+ +
Sbjct: 73 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132
Query: 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYN-MLRYSKRSMCKALHEKILHILISGKLL 151
+ G++P+ S+L+ SEA+++ + M+ +R + I + + G+ +
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR-V 191
Query: 152 KDAYVVVKDNSESISHPAIKKFASAFVRL---GNINLVNDVMKAIH 194
+A V++ E P + RL GN L D+ + +
Sbjct: 192 SEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 237
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G EA L + D V +L C++G+ + + RK++E
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110
I + I+I CK+ + A +M KG + + SSLI L
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 108/247 (43%), Gaps = 8/247 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI FC+ F++AK + D A D VV N+++ YCR ++ M ++R++
Sbjct: 407 MIYGFCKHNRFDDAKHMF-DLMASPD---VVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ + T++ LI FC+ A +M G P+ C+ L++ + EAL
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL 522
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFA---SAF 177
++ +++ SK + + I+H + G + +A+ + P ++ + S F
Sbjct: 523 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
I+ N + + G+ D ++ I R + + + ++L+ M G+ D
Sbjct: 583 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLI-RGCLKAGEIDKSIELISEMRSNGFSGD 641
Query: 238 SSTRNLI 244
+ T ++
Sbjct: 642 AFTIKMV 648
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G EA L K DVV +++ C+ GD +S ++++ K++E
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
I PD + +I CK+ + A +M KG P
Sbjct: 292 IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 8/248 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G +A+ L + K +V N M+ +C G ++R + E
Sbjct: 302 IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 361
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+PD TF+ LI KE A + +M + P+ +S+I+ K +A
Sbjct: 362 INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAK 421
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES---ISHPAIKKFASAF 177
+++++ I+ + K + + ++++ S + F
Sbjct: 422 HMFDLMASPD----VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGF 477
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
+ N+N D+ + + + G D +I + + E EK E L+L E + +D
Sbjct: 478 CEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF-CENEKLEEALELFEVIQMSKIDLD 536
Query: 238 SSTRNLIL 245
+ N+I+
Sbjct: 537 TVAYNIII 544
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G + A L E + K DVV+ ++++ C+ G ++ ++ E
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
I+P+ T++ +I FC + A R + DM + P+
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRT 87
Y V N ++ + R + + + RK++ I + +F+ILIK FC + T
Sbjct: 104 YTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLST 163
Query: 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144
+ + G QP+ ++L+ L SEAL+++ + + AL ++++ I
Sbjct: 164 FGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEI 220
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ CR G EEA + + + D+V NS++ CR G +E + + RKL
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 61 ISPDYNTFHILIKYFCK 77
I PD TF+ L+ + CK
Sbjct: 665 IPPDTVTFNTLMSWLCK 681
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+AF R G +EA++L + + D + NS++ CR G+++ + K+
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+P + +ILI C+ M A +M +G P+ +SLI L + + L
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163
+++ L+ ++ L G + DA +++ + E
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIE 697
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 12/210 (5%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+I F G ++AK + D Y DV NS++ Y + G + + V+ +
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 60 AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
P+ ++ IL+ FCK AY + +M G +P + LI K EA
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 120 LSVYNMLRYSKRSMCKALHEKILHILISG----KLLKDAYVVVKDN-SESISHPAI--KK 172
+ ++ R R CK + LISG +K A +++D SE + +
Sbjct: 479 VEIF---REMPRKGCKP-DVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 173 FASAFVRLGNINLVNDVMKAIHATGYRIDQ 202
+AF+R G I ++ + G +D+
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDE 564
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 30/246 (12%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ISAFC+ EA ++ + K K DV NS++ C +++ + ++R +
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ + T++ LI F + A + + +M +G +E +SLI L + +A
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 121 SVYN-MLRYSKRSMCKALHEKILHILISG----KLLKDAYVVVKDNSESISHPAIKKFAS 175
S++ MLR A +ILI+G ++++A K+ S P I F S
Sbjct: 585 SLFEKMLRDG-----HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639
Query: 176 ---AFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232
R G I + + + A G D F+ L+ W+
Sbjct: 640 LINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN-----------------TLMSWLCKG 682
Query: 233 GYVVDS 238
G+V D+
Sbjct: 683 GFVYDA 688
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI C+G +A+ + + E K ++ + NSML Y D + + V +++ E
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T++ LI +C+++ Y M M G P+ + SLI GK + +A
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017
Query: 121 SVYNML 126
++ L
Sbjct: 1018 QLFEEL 1023
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MIS + R G EA++L + E K D V NS+L A+ R + E V V +++ ++
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR-KGHQPEEELCSSLIFHLGKMRAHSEA 119
D T++ +I + K+ LA + DM G P+ + LI LGK EA
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457
Query: 120 LSV 122
++
Sbjct: 458 AAL 460
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 105/255 (41%), Gaps = 29/255 (11%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+ + +++A+ + G+ D+ NS++ AY + G E + +
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817
Query: 61 ISPDYNTFHILIKYFCK----EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKM-RA 115
SP + +IL+ C E++Y++ + DM K + SS++ L RA
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVV-EELQDMGFKISK------SSILLMLDAFARA 870
Query: 116 HS--EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES---ISHPAI 170
+ E +Y+ ++ + L+ ++ +L GK ++DA ++V + E+ +
Sbjct: 871 GNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIW 930
Query: 171 KKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230
+ + + V + I TG D+ ++ I Y +R +E
Sbjct: 931 NSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEE---------- 980
Query: 231 GQGYVVDSSTRNLIL 245
GY++ RNL L
Sbjct: 981 --GYLLMQQMRNLGL 993
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 47/101 (46%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86
+ D + N++L A R +++ + V ++ PD T++ +I + + + A R
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127
+++ KG P+ +SL++ + R + VY ++
Sbjct: 354 LFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++SA R + A ++ D EA + D+ N+M+ Y R G + +L+
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T++ L+ F +E+ M + G +E +++I GK AL
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 121 SVY 123
+Y
Sbjct: 423 QLY 425
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 100/236 (42%), Gaps = 13/236 (5%)
Query: 1 MISAFCRGGCFEE----AKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKL 56
++ A C G EE ++L D K K ++L ML A+ R G++ V + +
Sbjct: 828 LLHALCVDGRLEELYVVVEELQ-DMGFKISKSSILL---MLDAFARAGNIFEVKKIYSSM 883
Query: 57 DELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116
P + ++I+ CK K A + +M + E + +S++ + +
Sbjct: 884 KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDY 943
Query: 117 SEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAI---KKF 173
+ + VY ++ + + + ++ + + ++ Y++++ P + K
Sbjct: 944 KKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSL 1003
Query: 174 ASAFVRLGNINLVNDVMKAIHATGYRIDQGIFH--IAIARYIAEREKKELLLKLLE 227
SAF + + + + + + G ++D+ +H + I+R K E LL++++
Sbjct: 1004 ISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ISAF + C E+A+QL + +K K D ++M+ +G +++ +
Sbjct: 1003 LISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAG 1062
Query: 61 ISPDYNTFHILI 72
I P T H+L+
Sbjct: 1063 IEPTLATMHLLM 1074
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 122/303 (40%), Gaps = 49/303 (16%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC+ G +A+++ + + + VV N+++ YC+ G+++ + ++++
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSR 305
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ LI CKE A+ +M ++G P + + ++LI HS
Sbjct: 306 TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI------HGHSRNG 359
Query: 121 SVYNMLRYSKRSMCKALHEKIL--HILISGKLLKDAYVVVKDNSESISHPAIKK------ 172
+ M ++ + K L I+ + L++G V ++ + + ++
Sbjct: 360 EIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYT 419
Query: 173 -FASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAI------ARYI-AEREKKELL-- 222
F R G++ ++ K + G +D+ F + R I AER +E+L
Sbjct: 420 TLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRA 479
Query: 223 -------------------------LKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIA 257
KLL+ M G+V T N++L G+ A
Sbjct: 480 GIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA 539
Query: 258 DIL 260
D+L
Sbjct: 540 DML 542
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
+V + N ++ +C+ G++ V ++ + ++ P +F+ LI +CK +R
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLK 298
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK---ALHEKILHIL 145
M + +P+ S+LI L K A +++ MCK ++ I L
Sbjct: 299 HQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFD-------EMCKRGLIPNDVIFTTL 351
Query: 146 ISG-------KLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGY 198
I G L+K++Y + + F + G++ +++ + G
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGL 411
Query: 199 RIDQ 202
R D+
Sbjct: 412 RPDK 415
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+ AFC+ G + +L + ++ VV N +L C+ G M++ ++ + +
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG 550
Query: 61 ISPDYNTFHILIK 73
+ PD T++ L++
Sbjct: 551 VVPDDITYNTLLE 563
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + A L + E K K D++ N+++ +C G + ++R + +
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ TF +LI F KE A + + +M ++G P +SLI K EA+
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 121 SVYNML 126
+ +++
Sbjct: 389 QMVDLM 394
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/252 (18%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ EEA Q+ +K D++ N ++ YC+ ++ + + R++
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ + T++ L++ FC+ +A + +M + +P+ L+ L +AL
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAF--- 177
++ + SK + ++ I+H + + + DA+ D S+ +K A A+
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAW----DLFCSLPLKGVKLDARAYNIM 549
Query: 178 ----VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233
R +++ + + + + G+ D+ ++I I ++ + + +L+E M G
Sbjct: 550 ISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD-DDATTAAELIEEMKSSG 608
Query: 234 YVVDSSTRNLIL 245
+ D ST +++
Sbjct: 609 FPADVSTVKMVI 620
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G +++ +L D + +VV + ++ ++ + G + +++++ +
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG 363
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVD-MHRKGHQPE 99
I+P+ T++ LI FCKE A + MVD M KG P+
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQ-MVDLMISKGCDPD 402
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +F + G EA QL + + + + NS++ +C+ +E + ++ +
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 61 ISPDYNTFHILIKYFCK 77
PD TF+ILI +CK
Sbjct: 399 CDPDIMTFNILINGYCK 415
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMV 89
V+ N + A +T E V+ + ++++ I+ T I+I FC+ + A+ TM
Sbjct: 88 VIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMG 147
Query: 90 DMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN-MLRYSKRSMCKALHEKILHILISG 148
+ + G++P+ + ++L+ L SEAL + + M+ + L+ + + ++G
Sbjct: 148 KIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNG 207
Query: 149 KLLKDAYVVVKDNSESISHP 168
K + DA V++ E+ P
Sbjct: 208 K-VSDAVVLIDRMVETGFQP 226
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ SA + +E L E+K + + L+ M+ +CR + M K+ +L
Sbjct: 94 LFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLG 153
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
PD F+ L+ C E A + M GH+P
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G E+A + D + K DVV +++L +CR+ D++ + V R++ E
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
I PD T+ LI+ FC+++ A +M R G P+E ++LI
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ F + G EA ++ + VV N+++ +C TG ME + V+ + E
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD ++ ++ FC+ A R +M KG +P+ SSLI + R EA
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 121 SVY-NMLR 127
+Y MLR
Sbjct: 506 DLYEEMLR 513
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ ++ +L K + +++ N ++ CR G M+ V V+ +++
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
S D T++ LIK +CKE + A +M R G P +SLI + K + A+
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISG----KLLKDAYVVVKDNSESISHPAIKKF 173
+ +R R +C +E+ L+ G + +AY V+++ +++ P++ +
Sbjct: 366 EFLDQMRV--RGLCP--NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G F +A + + V+ S++ + C+ G+M M + ++
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T+ L+ F ++ AYR + +M+ G P S++ + + H
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP------SVVTYNALINGHC--- 426
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFA---SAF 177
++GK ++DA V++D E P + ++ S F
Sbjct: 427 -------------------------VTGK-MEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKE 220
R +++ V + + G + D + I + +R KE
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 104/250 (41%), Gaps = 19/250 (7%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
+V N ++ +C G+++ + + K++ P+ T++ LI +CK + ++ +
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263
Query: 89 VDMHRKGHQPEEELCSSLIFHL---GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
M KG +P + +I L G+M+ S L+ N YS L E + L
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS-------LDEVTYNTL 316
Query: 146 ISGKLLKDAY-VVVKDNSESISH---PAIKKFAS---AFVRLGNINLVNDVMKAIHATGY 198
I G + + + ++E + H P++ + S + + GN+N + + + G
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 199 RIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIAD 258
++ + + + + E ++L M G+ T N ++ N H ++
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNE-AYRVLREMNDNGFSPSVVTYNALI-NGHCVTGKMEDA 434
Query: 259 ILSKQHMKSK 268
I + MK K
Sbjct: 435 IAVLEDMKEK 444
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 79/171 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++A C+ G E+A+++ G AK + V+ N+M+ YCR GD+ + +++
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD+ ++ LI+ FC+ A + + M KG P E + LI G+ +
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCF 479
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIK 171
+ + + + +++ L G L +A +V +D + P ++
Sbjct: 480 DILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVR 530
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 104/259 (40%), Gaps = 11/259 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+G +A+QL + A+ ++ N+++ YC+ G+ E V ++
Sbjct: 220 LIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADH 279
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P TF+ L+K K M A + +M G P+ S L AL
Sbjct: 280 IEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAAL 339
Query: 121 SVYNMLRYSKRSMCKALHEKILHILI-SGKLLKDAYVVVKDNSESISHPAI--KKFASAF 177
VY S M +L+ L GK+ K ++ ++ ++ + + +
Sbjct: 340 GVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGY 399
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARY--IAEREKKELLLKLLEWMTGQGYV 235
R G++ ++A+ G + D ++ I R+ + E E E K + M +G
Sbjct: 400 CRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAE---KEVNKMKLKGVS 456
Query: 236 VDSSTRNLILKNSHLFGRQ 254
T N+++ +GR+
Sbjct: 457 PSVETYNILIGG---YGRK 472
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G E A++ + K V N ++ Y R + + +++++++
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
P+ ++ LI CK + A DM +G P+ + + LI
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI 536
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 6/213 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C+ G ++A +L D ++ ++ S+L +CR G M +V+ +++E
Sbjct: 224 LLDALCKHGSVKDAAKLFEDMRMRF-PVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAG 282
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD + L+ + AY + DM R+G +P + LI L K+ EA+
Sbjct: 283 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 342
Query: 121 SVY-NMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFV- 178
V+ M RY + + GK+ K Y+V+ D + P+ + V
Sbjct: 343 KVFVEMERYECEADVVTYTALVSGFCKWGKIDK-CYIVLDDMIKKGLMPSELTYMHIMVA 401
Query: 179 --RLGNINLVNDVMKAIHATGYRIDQGIFHIAI 209
+ + ++M+ + Y D GI+++ I
Sbjct: 402 HEKKESFEECLELMEKMRQIEYHPDIGIYNVVI 434
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M++A C+ G E+ + K D+V N+++ AY G ME +M +
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP T++ +I CK Y A +M R G P+ SL+ K E
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360
Query: 121 SVYNMLR 127
V++ +R
Sbjct: 361 KVFSDMR 367
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 6/249 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + R G E A + + +V LN M+ A C+ G ME V + ++ E
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T++ LI + + + A+ M M KG P +++I L K + A
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAK 325
Query: 121 SVY-NMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASA--- 176
V+ MLR ++ G +++ V S + P + F+S
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVV-PDLVCFSSMMSL 384
Query: 177 FVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236
F R GN++ ++ G D I+ I I Y + + + L M QG +
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY-CRKGMISVAMNLRNEMLQQGCAM 443
Query: 237 DSSTRNLIL 245
D T N IL
Sbjct: 444 DVVTYNTIL 452
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
DV NS+L +CR M+ V+RK+ E ++PD +T+ +I F + A+R
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIH 715
Query: 89 VDMHRKGHQPEEEL 102
+M ++G P+++
Sbjct: 716 DEMLQRGFSPDDKF 729
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + A +L + K + DVV N++L + + GD+++ + +
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
I P ++ IL+ C + A+R +M K +P +C+S+I
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMI 592
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
C+ G E +++ D ++ D+V +SM+ + R+G+++ + + E + PD
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125
+ ILI+ +C++ M +A +M ++G + ++++ L K + EA ++N
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 126 LRYSKRSMCKALHEKILHILISG 148
+ ++R++ + L ILI G
Sbjct: 471 M--TERALFPDSY--TLTILIDG 489
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++A C G EA ++ + +K K V++ NSM+ YCR+G+ + K+
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 61 ISPDYNTFHILIKYFCKEK 79
PD +++ LI F +E+
Sbjct: 616 FVPDCISYNTLIYGFVREE 634
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 3/204 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C+ G +E AK++ + D S+L C+ GD+ V +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD F ++ F + A + G P+ + + LI + S A+
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP---AIKKFASAF 177
++ N + +M + ILH L K+L +A + + +E P +
Sbjct: 431 NLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGH 490
Query: 178 VRLGNINLVNDVMKAIHATGYRID 201
+LGN+ ++ + + R+D
Sbjct: 491 CKLGNLQNAMELFQKMKEKRIRLD 514
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL- 59
MI +CR G + + ++ D + N+++ + R +M +++K++E
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650
Query: 60 -AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
+ PD T++ ++ FC++ A + M +G P+ + +I +E
Sbjct: 651 GGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTE 710
Query: 119 ALSVYN 124
A +++
Sbjct: 711 AFRIHD 716
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C+ EA +L + + D L ++ +C+ G++++ M + +K+ E
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I D T++ L+ F K A DM K P S L+ L +EA
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 121 SVYN 124
V++
Sbjct: 571 RVWD 574
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELA---ISPDYNTFHILIKYFCKEKMYILAY 85
+VV N M+ C+TGDM + ++ K+ ++ +SP+ T++ +I FCK LA
Sbjct: 252 NVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAE 311
Query: 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
R DM + G E +L+ G+ + EAL + + + + ++ I++ L
Sbjct: 312 RIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWL 371
Query: 146 ISGKLLKDAYVVVKD-NSESISHPAIKKFASAFVRLG 181
++ A V++D NS+++ I +F A V G
Sbjct: 372 FMEGDIEGAMSVLRDMNSKNMQ---IDRFTQAIVVRG 405
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A+ R G +EA +L + +K + V+ NS++ GD+E M V+R ++
Sbjct: 332 LVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKN 391
Query: 61 ISPDYNTFHILIKYFCK 77
+ D T I+++ C+
Sbjct: 392 MQIDRFTQAIVVRGLCR 408
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 15 KQLAGDFEAKYDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLD--ELAISPDYNTFH 69
+ +AG EA + D+V N++L +TG++E ++ K+ + S TF+
Sbjct: 514 RGMAGAAEAVVNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQDGEKSVSLVTFN 573
Query: 70 ILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
I+I + CK Y A + M +G P+ +LI K R+ + + +++ L
Sbjct: 574 IMINHLCKFGSYEKAKEVLKFMVERGVVPDSITYGTLITSFSKHRSQEKVVELHDYL 630
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92
LN+ + +++ V +++D L + NTF+++I FCKE A M
Sbjct: 186 LNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRML 245
Query: 93 RKGHQP 98
+ G P
Sbjct: 246 KCGVWP 251
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS+ C G +E ++LA FE Y N+++ C+ D + +MR++ E
Sbjct: 222 VISSMCEVGLVKEGRELAERFEPVVSVY-----NALINGLCKEHDYKGAFELMREMVEKG 276
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ ++ LI C LA+ + M ++G P SSL+ +AL
Sbjct: 277 ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDAL 336
Query: 121 SVYNML 126
++N +
Sbjct: 337 DLWNQM 342
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77
+VV N+++ +C G++ + V ++E+ SP+ T+ LI F K
Sbjct: 351 NVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAK 399
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/248 (18%), Positives = 107/248 (43%), Gaps = 4/248 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ ++A Q+ +K ++ N ++ YC+ ++ + + RK+
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ D T++ LI+ FC+ +A +M + P L+ L +AL
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKF---ASAF 177
++ + SK + ++ I+H + + + DA+ + P +K +
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
+ G ++ + + + G+ D ++I I ++ + + + +KL+E + G+ VD
Sbjct: 554 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATK-SVKLIEELKRCGFSVD 612
Query: 238 SSTRNLIL 245
+ST +++
Sbjct: 613 ASTIKMVI 620
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + A L + E K +++ N ++ +C G + ++R + +
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
I+P+ TF +LI F KE A +M +G P+ +SLI
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 375
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G +++ +L D + +VV + ++ ++ + G + + +++
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVD-MHRKGHQP 98
I+PD T+ LI FCKE ++ MVD M KG P
Sbjct: 364 IAPDTITYTSLIDGFCKEN-HLDKANQMVDLMVSKGCDP 401
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/276 (18%), Positives = 116/276 (42%), Gaps = 39/276 (14%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G A +L E + K D V + ++ C+ G +++ ++ +++
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRAHS 117
I+ + T++ILI FC + + + DM ++ P S LI GK+R
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 118 EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAF 177
E LH++++H I+ ++I++ ++ F
Sbjct: 354 E------------------LHKEMIHRGIA--------------PDTITYTSL---IDGF 378
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
+ +++ N ++ + + G + F+I I Y + + + L+L M+ +G V D
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY-CKANRIDDGLELFRKMSLRGVVAD 437
Query: 238 SSTRNLILKNSHLFGRQLIADILSKQHMKSKSSKTL 273
+ T N +++ G+ +A L ++ + K +
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNI 473
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 23 AKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82
AK +YD+VL A C+ +++ + H + T I+I FC+ +
Sbjct: 99 AKTKQYDLVL------ALCKQMELKGIAH------------NLYTLSIMINCFCRCRKLC 140
Query: 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
LA+ M + + G++P S+LI L SEAL + +
Sbjct: 141 LAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 182
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ SA + ++ L E K +++ L+ M+ +CR + M K+ +L
Sbjct: 94 LFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLG 153
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA- 119
P+ TF LI C E A + M GH+P+ ++L+ L +EA
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 120 LSVYNMLRYS 129
L + M+ Y
Sbjct: 214 LLIDKMVEYG 223
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C G EA L + + V +L C++G M ++RK++E
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95
I D + I+I CK A+ +M KG
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 35/203 (17%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ISA+ R G +EA +L K K DV ++L + R G +ES M + ++
Sbjct: 355 LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 61 ISPDYNTFHILIKYF------------------CKEKMYILAYRTMV------------- 89
P+ TF+ IK + C I+ + T++
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVS 474
Query: 90 ----DMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
+M R G PE E ++LI + + +A++VY + + + + + +L L
Sbjct: 475 GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
Query: 146 ISGKLLKDAYVVVKDNSESISHP 168
G + + + V+ + + P
Sbjct: 535 ARGGMWEQSEKVLAEMEDGRCKP 557
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 8/250 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ RG +EA Q+ + +A YD V N++L Y ++ + M V+ ++
Sbjct: 285 LITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNG 344
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP T++ LI + ++ M A M KG +P+ ++L+ + A+
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404
Query: 121 SVYNMLRYS--KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFV 178
S++ +R + K ++C + I GK + + + N +S P I + +
Sbjct: 405 SIFEEMRNAGCKPNIC-TFNAFIKMYGNRGKFTEMMKIFDEINVCGLS-PDIVTWNTLLA 462
Query: 179 RLGNINL---VNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYV 235
G + V+ V K + G+ ++ F+ I+ Y + E + + M G
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY-SRCGSFEQAMTVYRRMLDAGVT 521
Query: 236 VDSSTRNLIL 245
D ST N +L
Sbjct: 522 PDLSTYNTVL 531
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%)
Query: 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66
R F +++++ + AK K D++ N+++ AYCR M + ++ I PD
Sbjct: 676 RSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVI 735
Query: 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
T++ I + + M+ A + M + G +P + +S++ K+ EA
Sbjct: 736 TYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 7/251 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS + G A + + DV S++ A+ +G ++V +K++E
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVD-MHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
P T+++++ F K ++V+ M G P+ ++LI + H EA
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298
Query: 120 LSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD---NSESISHPAIKKFASA 176
V+ ++ + S K + +L + K+A V+ + N S S SA
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISA 358
Query: 177 FVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKK-ELLLKLLEWMTGQGYV 235
+ R G ++ ++ + G + D + ++ + ER K E + + E M G
Sbjct: 359 YARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF--ERAGKVESAMSIFEEMRNAGCK 416
Query: 236 VDSSTRNLILK 246
+ T N +K
Sbjct: 417 PNICTFNAFIK 427
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 37/77 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+CR +A ++ + DV+ N+ + +Y E + V+R + +
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764
Query: 61 ISPDYNTFHILIKYFCK 77
P+ NT++ ++ +CK
Sbjct: 765 CRPNQNTYNSIVDGYCK 781
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93
NS++ + R+ D ++R++ I PD +++ +I +C+ A R +M
Sbjct: 668 NSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN 727
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148
G P+ ++ I EA+ V +RY + C+ ++ + ++ G
Sbjct: 728 SGIVPDVITYNTFIGSYAADSMFEEAIGV---VRYMIKHGCRP-NQNTYNSIVDG 778
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 110/252 (43%), Gaps = 4/252 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ FC +EAKQ+ +K+ DVV N+++ +C+ +E M V R++ +
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ + T++ILI+ + +A +M G P ++L+ L K +A+
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP---AIKKFASAF 177
V+ L+ SK + ++ + ++D + + + S P A S F
Sbjct: 487 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
R G+ + + K + G + G ++ I + + + +E +L++ M G+ D
Sbjct: 547 CRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD-REASAELIKEMRSCGFAGD 605
Query: 238 SSTRNLILKNSH 249
+ST L+ H
Sbjct: 606 ASTIGLVTNMLH 617
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 53/116 (45%)
Query: 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI 70
++A L G+ ++ + +L A + + V+ + ++ L I ++ T+ I
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
LI FC+ LA + M + G++P SSL+ + SEA+++ + +
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 13 EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI 72
EA L AK + D+V ++ C+ GD + +++ K+++ + P ++ +I
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 73 KYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132
CK K A +M KG +P SSLI L Y + R
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI----------SCLCNYGRWSDASRL 313
Query: 133 MCKALHEKILHILISGKLLKDAYV 156
+ + KI + + L DA+V
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFV 337
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I AF + G EA++L + + +V +S++ +C M + +++ E
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC----MHDRLDEAKQMFEFM 387
Query: 61 IS----PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95
+S PD T++ LIK FCK K +M ++G
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 23 AKYDKYDVVL-----------------LNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
AK +K+DVV+ + ++ +CR + + V+ K+ +L P+
Sbjct: 92 AKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNI 151
Query: 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122
T L+ +C K A + M G+QP ++LI L SEA+++
Sbjct: 152 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C G + +A +L D + DV ++++ A+ + G + + ++ + +
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRS 356
Query: 61 ISPDYNTFHILIKYFC 76
I P T+ LI FC
Sbjct: 357 IDPSIVTYSSLINGFC 372
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/186 (17%), Positives = 75/186 (40%), Gaps = 3/186 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ +C EA L + + V N+++ M ++ ++
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ +++ CK LA+ + M + +P + +++I L K + +AL
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFAS---AF 177
+++ + + ++ L + DA ++ D E +P + F++ AF
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Query: 178 VRLGNI 183
V+ G +
Sbjct: 337 VKEGKL 342
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 105/248 (42%), Gaps = 7/248 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MIS +C+ G A + D VV N++L + C +G ++ M V+ ++ +
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPD---VVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ ILI+ C++ A + + +M +G P+ + L+ + K EA+
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFA---SAF 177
N + S H IL + S DA ++ D P++ F +
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
R G + D+++ + G + + ++ + + E+ K + ++ LE M +G D
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK-KMDRAIEYLERMVSRGCYPD 413
Query: 238 SSTRNLIL 245
T N +L
Sbjct: 414 IVTYNTML 421
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 59/126 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ + C G + +A++L D K VV N ++ CR G + + ++ K+ +
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
P+ +++ L+ FCKEK A + M +G P+ ++++ L K +A+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 121 SVYNML 126
+ N L
Sbjct: 435 EILNQL 440
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77
D++ +++ +CR G ++ L+ PD T++++I +CK
Sbjct: 136 DIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 78/169 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S FCR G A ++ + E + K V ++ + R+ +ME + + ++EL
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD +T+ +LI FC + A R M K +P E + +++I K + AL
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPA 169
+ + + + A + ++ +L + K+A +V+ +S P+
Sbjct: 499 KLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPS 547
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G EA +L K + + V+ N+M+ YC+ G + ++++++E
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS 104
++P+ ++ +I+ CKE+ A R + M G P + S
Sbjct: 509 LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILS 552
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G +A L D +++ +V N ++ +CR GD ++++++E
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
I P T+ ILI F + A + + M G P+ S LI
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I CR EA ++ ++ +++ N+++ +C G + + + R L
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
+SP T++IL+ FC++ A + + +M +G +P
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKP 406
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 44/98 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G ++A Q+ + + ++V N+++ CR + V+ ++
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG 333
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
I+P+ T++ LI FC A D+ +G P
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Query: 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64
FC+ G + A E K + +VV N+M+ A+CR +M+ + ++ E + P+
Sbjct: 459 FCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPN 518
Query: 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS-VY 123
T+ ILI F K K A+ + M+ + E + +++I L K+ S+A +
Sbjct: 519 NFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQ 578
Query: 124 NMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFAS 175
N+++ + SM + I+ + A ++ SE+ P + F S
Sbjct: 579 NLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTS 630
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 56/124 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I AF + G EEA ++ + V+ S++ YC+ ++ + + +++E
Sbjct: 316 VIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEG 375
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++PD F +++++FCK A + M P L ++I K + AL
Sbjct: 376 LAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAAL 435
Query: 121 SVYN 124
++N
Sbjct: 436 EIFN 439
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 39/232 (16%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F + G + A + + +VV S++ +C++ M+ + + ++ +
Sbjct: 596 IIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSME 655
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF---HLGKMRAHS 117
+ D + LI FCK+ AY ++ G P + +SLI +LGKM A
Sbjct: 656 LKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAI 715
Query: 118 EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAF 177
+ L++K+++ IS L Y + D
Sbjct: 716 D------------------LYKKMVNDGISCDLF--TYTTMID---------------GL 740
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWM 229
++ GNINL +D+ + G D+ I H+ + ++++ + K+LE M
Sbjct: 741 LKDGNINLASDLYSELLDLGIVPDE-ILHMVLVNGLSKKGQFLKASKMLEEM 791
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 82/198 (41%), Gaps = 10/198 (5%)
Query: 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCA-----YCRTGDMESVMHVMRKLDELAISP 63
GC + A+ E D ++ + + +C +C+ G +++ ++ +++ I P
Sbjct: 424 GCLK-AESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEP 482
Query: 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
+ ++ ++ C+ K LA +M KG +P S LI K + A V
Sbjct: 483 NVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVI 542
Query: 124 NMLRYSKRSMCKALHEKILHILI----SGKLLKDAYVVVKDNSESISHPAIKKFASAFVR 179
N + S + ++ I++ L + K + ++K+ S+S + FV+
Sbjct: 543 NQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVK 602
Query: 180 LGNINLVNDVMKAIHATG 197
+G+ + + + + G
Sbjct: 603 VGDTDSAVETYREMSENG 620
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 12/245 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G A +L + +VV N+++ +CR ++ V ++ +
Sbjct: 279 LIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVN 338
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++P+ T++ LI + ++ + +A+R DM G Q + ++LIF L K +A
Sbjct: 339 VAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAA 398
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKD----AYVVVKDNSESISHPAIKKF--- 173
L K ++ + LI G+ ++ + + K S HP + F
Sbjct: 399 QFVKEL--DKENLVP--NSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454
Query: 174 ASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233
SAF R + + + V++ + +D H + + + K +L+ KLL+ M G+
Sbjct: 455 VSAFCRNEDFDGASQVLREMVRRSIPLDSRTVH-QVCNGLKHQGKDQLVKKLLQEMEGKK 513
Query: 234 YVVDS 238
++ +S
Sbjct: 514 FLQES 518
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92
LN ++ YCR+G ++ + +++ ++ L +++ LI C++ + A + M
Sbjct: 241 LNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMG 300
Query: 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127
+ G QP ++LI + EA V+ ++
Sbjct: 301 KSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMK 335
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C+ G +EA ++ + + V N+++ C+ +E + R L
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD TF+ LI+ C + + +A +M KG +P+E + LI L EAL
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455
Query: 121 SVYNMLRYSKRSMC 134
NML+ + S C
Sbjct: 456 ---NMLKQMELSGC 466
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ E+A QL + K D NS+L +CR GD++ +++ +
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ LI CK +A + + + KG + +I L + R +EA+
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
Query: 121 SVY 123
+++
Sbjct: 631 NLF 633
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 3/204 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C+ EEA +LA +K DV NS++ C T + M + ++
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+++LI C + A + M G ++LI K EA
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAE 490
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASA---F 177
+++ + S + ++ L + ++DA ++ P + S F
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHF 550
Query: 178 VRLGNINLVNDVMKAIHATGYRID 201
R G+I D+++A+ + G D
Sbjct: 551 CRGGDIKKAADIVQAMTSNGCEPD 574
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGD-FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+++ C+ G + A ++ + YD DV NS++ C+ G+++ + V+ ++
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDP-DVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Query: 60 AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
SP+ T++ LI CKE A + KG P+ +SLI L R H A
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419
Query: 120 LSVYNMLR 127
+ ++ +R
Sbjct: 420 MELFEEMR 427
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKL-DELAISPDYNTFHILIKYFCKEKMYILAYR 86
+ V +N ++ +C+ G +E ++ ++++ ++ PD TF+ L+ CK A
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
M M ++G+ P+ +S+I L K+ EA+ V + +
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/109 (16%), Positives = 50/109 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FCRGG ++A + + + D+V +++ C+ G +E ++R +
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109
I+ + ++ +I+ +++ A +M + P + + ++F
Sbjct: 606 INLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFR 654
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 55 KLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
K+ I PD +TF++LIK C+ A + DM G P+E+ ++++
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVM 231
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
++ FC+ G E+A + + D + D N+++ C+ G ++ + +M + +
Sbjct: 265 IVHGFCKEGRVEDALNFIQEM-SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ 323
Query: 59 LAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
PD T++ +I CK A + M + P ++LI L K E
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 119 ALSVYNML 126
A + +L
Sbjct: 384 ATELARVL 391
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C+ G +EA ++ D K+ ++ S+L +CR G + V+ ++ E
Sbjct: 208 LLDALCKNGSVKEASKVFEDMREKFPP-NLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH-SEA 119
+ PD F L+ + AY M DM ++G +P + LI L + EA
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEA 326
Query: 120 LSVY-NMLRYS 129
+ V+ M RY
Sbjct: 327 MRVFVEMERYG 337
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ +CR G EAK++ + + D+V+ ++L Y G M +M + +
Sbjct: 242 LLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRG 301
Query: 61 ISPDYNTFHILIKYFCK-EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
P+ N + +LI+ C+ EK A R V+M R G + + ++LI K +
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKG 361
Query: 120 LSVYNMLR 127
SV + +R
Sbjct: 362 YSVLDDMR 369
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDEL 59
++S + G +A L D + + +V ++ A CRT M+ M V +++
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERY 336
Query: 60 AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE----------------ELC 103
D T+ LI FCK M Y + DM +KG P + E C
Sbjct: 337 GCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEEC 396
Query: 104 SSLIFHLGKMRAHSEALSVYNML 126
LI + + H + L +YN++
Sbjct: 397 LELIEKMKRRGCHPDLL-IYNVV 418
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI 70
FEE +L + + D+++ N ++ C+ G+++ + + +++ +SP +TF I
Sbjct: 393 FEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVI 452
Query: 71 LIKYFCKEKMYILAYRTMVDMHRKG 95
+I F + I A +M +G
Sbjct: 453 MINGFTSQGFLIEACNHFKEMVSRG 477
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 40/98 (40%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS FC+ G ++ + D K V ++ A+ + E + ++ K+
Sbjct: 348 LISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG 407
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
PD ++++I+ CK A R +M G P
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSP 445
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 7/239 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCR---TGDMESVMHVMRKLD 57
+I+A C+ G +A+ + D + +VV N+++ YC+ G M V++++
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 58 ELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
E +SP+ TF+ILI F K+ + + +M + +P +SLI L S
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKIS 348
Query: 118 EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA---YVVVKDNSESISHPAIKKFA 174
EA+S+ + + + + +++ +LK+A + VK +
Sbjct: 349 EAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLI 408
Query: 175 SAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233
A+ +LG I+ + + + G D G ++ IA + E KL + +T +G
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG-LCRNGNIEAAKKLFDQLTSKG 466
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ CR G E AK+L +K D+V + ++ YCR G+ +++++ ++
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSK-GLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500
Query: 61 ISPDYNTFHILIKYFCKE 78
+ P + T++I++K +CKE
Sbjct: 501 LKPRHLTYNIVMKGYCKE 518
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 7/149 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C GG EA + + + +++ N+++ +C+ ++ + + +
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
P +++LI +CK + +M R+G P+ + LI L + A
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAK 456
Query: 121 SVYNMLRYSKRSMCKALHEKI-LHILISG 148
+++ L K L + + HIL+ G
Sbjct: 457 KLFDQL------TSKGLPDLVTFHILMEG 479
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77
+V N ++ A C+TG M VM + SP+ +++ LI +CK
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + C FE+A++L G K +V+ N+++ YC+ G +E + V+ ++
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 61 ISPDYNTFHILIKYFCKEKMY-----------------ILAYRTMVD------------- 90
+SP+ T++ LIK +CK ++ ++ Y +++D
Sbjct: 424 LSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483
Query: 91 ----MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
M+ +G P++ +S+I L K + EA +++ L
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++++ R G +E KQ+ + ++ N M+ YC+ G++E + K+ E
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD+ T+ LI +C+ K A++ +M KG + E + LI L R EA+
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 121 SVY 123
++
Sbjct: 309 DLF 311
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 19 GDFEAKYDKYDVVL----------LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68
GDF+ Y ++ +L + + YCR G + +M K+ E +SPD T+
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR------AHSEALSV 122
LIK + A+ + M G +P + SLI HL +M+ + E ++
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735
Query: 123 YNMLRY 128
NM+ +
Sbjct: 736 SNMMEF 741
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
DVV NS++ CR+G+ +S ++ +++ + PD T+ +I CK K A
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEA-LSVYNMLRYSKRSMCKAL-HEKILHILI 146
+ +KG P + ++LI K EA L + ML SK + +L ++H L
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML--SKNCLPNSLTFNALIHGLC 578
Query: 147 SGKLLKDAYVV 157
+ LK+A ++
Sbjct: 579 ADGKLKEATLL 589
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
D +L++ +L + GD + +++ PD +T+ I+ +C+E + A M
Sbjct: 605 DTILIHRLL----KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127
M G P+ SSLI G + + A V +R
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMR 699
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 38/208 (18%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G +EA + +K + + N+++ C G ++ + K+ ++
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P +T ILI K+ + AY M G +P+ ++ I
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFI------------- 644
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFAS---AF 177
++ C+ G+LL ++ K +S P + ++S +
Sbjct: 645 ----------QTYCR-----------EGRLLDAEDMMAKMRENGVS-PDLFTYSSLIKGY 682
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIF 205
LG N DV+K + TG Q F
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTF 710
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR-KG 95
LCA + ++V+ ++ K+ E +++P+ ++ LI C+ +A + M R +G
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791
Query: 96 HQPEEELCSSLIFHLGKMRAHSEALSVYN 124
P E + ++L+ K++ H+EA V +
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVD 820
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 36 MLCAYCRTGDM---ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92
++ C G++ E V M++ + ISP F+ L+ CK K + A + + DM
Sbjct: 766 LILGICEVGNLRVAEKVFDHMQRNE--GISPSELVFNALLSCCCKLKKHNEAAKVVDDMI 823
Query: 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
GH P+ E C LI L K SV+ L
Sbjct: 824 CVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL 857
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ F++A+ + + DVV S + AYC+ GD V ++ ++ E
Sbjct: 279 LIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENG 338
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+P+ T+ I++ K K A M G P+ + SSLI L K +A
Sbjct: 339 CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAA 398
Query: 121 SVY 123
++
Sbjct: 399 EIF 401
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86
K D N ++ +C+ + +M + +PD T+ ++ +CKE +
Sbjct: 270 KPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNE 329
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146
+ +M G P + ++ LGK + +EAL VY ++ + ++HIL
Sbjct: 330 MLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILS 389
Query: 147 SGKLLKDAYVVVKD 160
KDA + +D
Sbjct: 390 KTGRFKDAAEIFED 403
>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830
OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2
Length = 608
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
CR GC EA Q+ G V + + ++ + R+G+ + + + K+ ++ SP+
Sbjct: 223 CRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNL 282
Query: 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125
T+ LIK F M A+ + + +G P+ LC+ +I ++ EA V+
Sbjct: 283 VTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTS 342
Query: 126 LRYSKRSMCKALHEKILHIL-ISGKL 150
L K + IL L +SGK
Sbjct: 343 LEKRKLVPDQYTFASILSSLCLSGKF 368
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F G +EA + +++ D+VL N M+ Y R G E V L++
Sbjct: 288 LIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRK 347
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYR 86
+ PD TF ++ C + L R
Sbjct: 348 LVPDQYTFASILSSLCLSGKFDLVPR 373
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F R G F+EA+++ K K DVV N+M+ +CR+G ++ + M +++E
Sbjct: 491 LIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEH 550
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+ PD T+ +I + K++ A + M + +P +SLI
Sbjct: 551 LVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLI 597
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDK---YDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57
++ C G E ++L E ++ K ++V N+++ YC+ GD+E+ V ++L
Sbjct: 211 LVKGMCNEGKVEVGRKL---IEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK 267
Query: 58 ELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95
P TF +I FCKE ++ + R + ++ +G
Sbjct: 268 LKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERG 305
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 4/180 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI FCR G +EA ++ D ++++ Y + DM + + + R +++
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNK 585
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
P+ T+ LI FC + + +A T +M + P ++LI L K + E
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKA 645
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180
Y L + + + +E + L+ G + K + V+ + S +H F+ F R+
Sbjct: 646 VYYWELMMTNKCV---PNEVTFNCLLQGFVKKTSGKVLAEPDGS-NHGQSSLFSEFFHRM 701
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S C+ G F AK L + + D + +++ + R+GD + V E
Sbjct: 456 LMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKG 515
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ D + +IK FC+ M A M M+ + P++ S++I K + + A+
Sbjct: 516 VKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAI 575
Query: 121 SVYNMLRYSKRSMCKA 136
++ RY +++ CK
Sbjct: 576 KIF---RYMEKNKCKP 588
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 59/125 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+C+ ++ A +L + K D+V ++ +G M+ +++ KL +
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRG 445
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD +++L+ CK ++ A +M + P+ + ++LI + EA
Sbjct: 446 VSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEAR 505
Query: 121 SVYNM 125
V+++
Sbjct: 506 KVFSL 510
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG----DMESVMHVMRKL 56
MI+ FC+ G F + +L + + + + V LN+++ A R G ES+ ++
Sbjct: 281 MINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAN- 339
Query: 57 DELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
PD T++ILI CKE +A + + +KG P
Sbjct: 340 ---DCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIP 378
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 110/252 (43%), Gaps = 12/252 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ +C G +EA +L + K + V ++++ YC+ ME + + ++++
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD T++I+++ + + A V + G Q E + ++ L K + +AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKL-------LKDAYVVVKDNSESISHPAIKKF 173
++ L M L + +I+I L KD +V N ++ +
Sbjct: 637 QMFQNLCL----MDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692
Query: 174 ASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233
A + G + ++ + ++ G +D G+ + I R + +R + L + +
Sbjct: 693 AENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF-IVRELLQRGEITRAGTYLSMIDEKH 751
Query: 234 YVVDSSTRNLIL 245
+ +++ST +L +
Sbjct: 752 FSLEASTASLFI 763
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+A C+ ++A ++ D + NS+L YC +G + + ++K+
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
+ PD T+ +L+ Y CK + A + M ++G +PE
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 4/223 (1%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86
K +V+ N+++ YC G M+ M ++ + + + P+ T+ LI +CK A
Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146
+M G P+ + ++ L + R + A +Y + S + + + ILH L
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627
Query: 147 SGKLLKDAYVVVKD---NSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG 203
KL DA + ++ + A +++G + D+ A + G +
Sbjct: 628 KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYW 687
Query: 204 IFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILK 246
+ + +A I + E L +L M G VDS N I++
Sbjct: 688 TYRL-MAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 19 GDFEAKYDKY----------DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68
GD + Y Y DVV NS++ A C+ M+ M V+ + + + PD T+
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269
Query: 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128
+ ++ +C A + M G +P+ S L+ +L K EA +++ +
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM-- 327
Query: 129 SKRSM 133
+KR +
Sbjct: 328 TKRGL 332
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSML---CAYCRTGDMESVMHVMRKLD 57
+I CR G + G+ K + D + +L CA RT D + V+R++
Sbjct: 93 LIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI--VLRRMT 150
Query: 58 ELAISPDYNTFHILIKYFCKEKMYILAYR---TMVDMHRKGHQPEEELCSSLIFHLGKMR 114
EL P+ +++IL+K C E A M D G P+ +++I K
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210
Query: 115 AHSEALSVY 123
+A S Y
Sbjct: 211 DSDKAYSTY 219
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY---ILAYRTMVDMH 92
++CAY + G ++ M V K+ + ++P+ T+ +I CK +L + M+D
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-- 434
Query: 93 RKGHQPEEELCSSLIFHL 110
+G P + +SLI L
Sbjct: 435 -EGLSPGNIVYNSLIHGL 451
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 70/168 (41%), Gaps = 3/168 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C +E A++L + + + + NS++ ++C+ G + + + +
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T++ LI +C A + + M G +P S+LI K+ +AL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGK---LLKDAYVVVKDNSESI 165
++ + S S + IL L + K+ YV + ++ I
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/154 (17%), Positives = 63/154 (40%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ +C G +EA + + DVV + ++ C+ G + + +
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T+ L++ + + + + + M R G P+ + S LI K +A+
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
V++ +R + + ++ IL ++DA
Sbjct: 392 LVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
++SA+ +EA + + K D+V N+M+ A CR G M+ ++ + +L++
Sbjct: 163 LLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKN 222
Query: 60 AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
PD +F+ L++ F + ++++ R M K P +S + L + + ++A
Sbjct: 223 GFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDA 282
Query: 120 LSVYNMLR 127
L++ ++++
Sbjct: 283 LNLIDVMK 290
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI 61
+ R F +A L + + DV N+++ AY ++E VM ++ E +
Sbjct: 270 VRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGL 329
Query: 62 SPDYNTFHILIKYFCKE 78
+PD T+ +LI CK+
Sbjct: 330 TPDTVTYCMLIPLLCKK 346
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 65/127 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I++F R G +EA + + E K D++ NS++ + GD++ +++ E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++PD T+ L++ F K + +AY +M KG QP + L+ L K +EA+
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAV 602
Query: 121 SVYNMLR 127
+Y+ ++
Sbjct: 603 DLYSKMK 609
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+ + C G EA ++ K D ++ N++ A + + + + K+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
SPD T++ILI F + A ++ R +P+ +SLI LGK EA
Sbjct: 473 PSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEA 531
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
D+ N ++ ++ R G+++ +++ +L+ PD +++ LI K A+
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRF 535
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
+M KG P+ S+L+ GK A S++
Sbjct: 536 KEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLF 570
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI 70
FEE K + + DV+ N+++ +C+ G + + R++ + P+ ++
Sbjct: 320 FEEMKDMCCE-------PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
L+ FCKE M A + VDM R G P E +SLI K+ S+A + N
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGN 426
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI C+ G E A+ L + + + D V NSM+ + + G ++ + ++ ++
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T++ LI FCK + +M G +P S+L+ K +A+
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 121 SVYNMLR 127
Y +R
Sbjct: 388 KFYVDMR 394
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 12 EEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHIL 71
E AK + + + K + ++ +++ AY ++G+ +H++ ++ EL I TF +L
Sbjct: 524 EAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVL 583
Query: 72 IKYFCKEKM 80
I CK K+
Sbjct: 584 IDGLCKNKL 592
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 96/213 (45%), Gaps = 13/213 (6%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
D++ +++L C+ G ++ ++ + PD ++I I +FCK+ A+R +
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148
DM +KG E +SLI LG E + + ++ S + + L G
Sbjct: 583 KDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEG 642
Query: 149 KLLKDAYVVVKDNSESISHPAIKKFA---SAFVRLGNINLVNDVMK-AIHATGYRIDQGI 204
+ ++DA ++ + + P + F AF ++ + ++ +V + A+ G + +G+
Sbjct: 643 EKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQK--EGL 700
Query: 205 FHIAIARYIAEREKKELLLK---LLEWMTGQGY 234
+ + +A + LLK LLE + +G+
Sbjct: 701 YSLMFNELLAAGQ----LLKATELLEAVLDRGF 729
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/99 (18%), Positives = 45/99 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A C C + A++L + K K + ++ YC+ G + + ++ ++
Sbjct: 153 LIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFG 212
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
+ P+ ++ ++ FC+E + + + M +G P+
Sbjct: 213 VLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPD 251
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNS---MLCAYCRTGDMESVMHVMRKLD 57
M+ FC+ G E+AK L FE+ + D+ L S L R G V++++
Sbjct: 297 MLKGFCKVGLLEDAKTL---FESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMT 353
Query: 58 ELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
+ I P +++IL+ CK M A + M R G P+
Sbjct: 354 DKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPD 395
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 43/98 (43%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G F EAK L + + + D V N + +C+ G + S V++ +++
Sbjct: 530 LLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
T++ LI + + M +M KG P
Sbjct: 590 CHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISP 627
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 45/118 (38%)
Query: 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI 61
+ R G F EA+ + K + N ++ C+ G + ++ + +
Sbjct: 333 LQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGV 392
Query: 62 SPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
PD T+ L+ +C A + +M R P C+ L+ L KM SEA
Sbjct: 393 CPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEA 450
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC ++A +AG E K DVV+ ++ C+ + + V++++ +
Sbjct: 164 LVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG 223
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ T+ LI CK A R + +M K P S+LI K S+
Sbjct: 224 ISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVD 283
Query: 121 SVYNML 126
SVY M+
Sbjct: 284 SVYKMM 289
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 1 MISAFCRGGCFEEAKQLA--GDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
+++ FCR CF+ + L+ G + D+V +S++ +C + ++ ++V ++++
Sbjct: 129 LVNCFCR--CFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEK 186
Query: 59 LAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
+ I D ILI CK ++ + A + M +G P SSLI L K
Sbjct: 187 MGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCK 240
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C+ G +A++ + ++K +V+ ++++ AY + G + V V + + +++
Sbjct: 234 LITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMS 293
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106
I P+ T+ LI C A + + M KG P S+L
Sbjct: 294 IDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTL 339
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFC-----KEKMYIL 83
D+ N ++ +CR S + + K+ +L I PD T L+ FC K+ +Y+
Sbjct: 122 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVA 181
Query: 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143
M + G + + + + LI L K R AL V ++ S + ++
Sbjct: 182 G-----QMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLIT 236
Query: 144 ILISGKLLKDAYVVVKDNSESISHPAIKKFAS---AFVRLGNINLVNDVMKAIHATGYRI 200
L L DA + + +P + F++ A+ + G ++ V+ V K + I
Sbjct: 237 GLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMM--IQMSI 294
Query: 201 DQGIFHIAIARY-IAEREKKELLLKLLEWMTGQG 233
D +F + Y + + + +K+L+ M +G
Sbjct: 295 DPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 328
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE---LAISPDYNT 67
F++A L Y +V N +L A + + V+++ ++++ + ISPD T
Sbjct: 66 FDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYT 125
Query: 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+IL+ FC+ A + M + G +P+ SSL+
Sbjct: 126 CNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLV 165
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C G + EAK+L D E + K +V ++ + G ++ ++ ++ +
Sbjct: 262 LMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRR 321
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD ++IL+ + C E AYR + +M KG +P +I ++ L
Sbjct: 322 IKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGL 381
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVK 159
+V N + S+ A ++ LI G L A V++
Sbjct: 382 NVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLE 420
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMV 89
VV NS++ CR DM ++ + + I P+ TF +L+K C + Y A + M
Sbjct: 221 VVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMF 280
Query: 90 DMHRKGHQP 98
DM +G +P
Sbjct: 281 DMEYRGCKP 289
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G EEAK+L + +K + + + N M+ AYC+ G ++ + ++
Sbjct: 475 LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANG 534
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ LI C A R +M KG + +I L K EA
Sbjct: 535 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 594
Query: 121 SVYNMLR 127
+Y+ ++
Sbjct: 595 GLYDEMK 601
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS 62
S F R ++EAKQ K V +++ YC+ G++E + ++ +
Sbjct: 442 SCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
P+ T++++I +CK+ A + +M G P+ +SLI
Sbjct: 502 PNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLI 546
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +CR G +EA + E K + DV N++ + R + + ++ E
Sbjct: 405 LIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGG 464
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF---------HLG 111
+ ++ LI +CKE A R V+M KG QP + +I+
Sbjct: 465 VKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524
Query: 112 KMRAHSEA 119
K+RA+ EA
Sbjct: 525 KLRANMEA 532
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66
+ G +A++L + + + DV + S++ CR G+M+ + +L E +SP
Sbjct: 306 KNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSY 365
Query: 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
T+ LI CK A M +M KG + + ++LI + EA +Y+++
Sbjct: 366 TYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVM 425
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI A+C+ G +EA++L + EA D S++ C +++ M + ++
Sbjct: 510 MIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 569
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+ + T+ ++I K A+ +M RKG+ + ++ ++LI
Sbjct: 570 LDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS CR G + A L + K +++ C+ G+M + +M ++
Sbjct: 335 LISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKG 394
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
++ F+ LI +C++ M A M +KG Q + C+++ +++ + EA
Sbjct: 395 VNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEA 453
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Query: 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG---HQ 97
CR G++E ++++ I P+ T++ +I + K++ + + M + G ++
Sbjct: 235 CRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNK 294
Query: 98 PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL----LKD 153
L L GKM S+A +++ +R +R + +H + LIS +K
Sbjct: 295 VTYTLLMELSVKNGKM---SDAEKLFDEMR--ERGIESDVH--VYTSLISWNCRKGNMKR 347
Query: 154 AYVVVKDNSESISHPAIKKFAS---AFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIA 210
A+++ + +E P+ + + ++G + +M + + G I Q +F+ I
Sbjct: 348 AFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLID 407
Query: 211 RYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLI 244
Y + E + + + M +G+ D T N I
Sbjct: 408 GYCRKGMVDEASM-IYDVMEQKGFQADVFTCNTI 440
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+++A+CR G ++A A + E+ + +VV NS++ Y GD+E + V+R + E
Sbjct: 231 VVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSER 290
Query: 60 AISPDYNTFHILIKYFCKEKM 80
+S + T+ LIK +CK+ +
Sbjct: 291 GVSRNVVTYTSLIKGYCKKGL 311
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 62/126 (49%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ +CR G +A ++ + + + + NS++ YC++G + + ++++ +
Sbjct: 337 LMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWS 396
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD++T++ L+ +C+ A + M +K P + L+ ++ A + L
Sbjct: 397 LKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVL 456
Query: 121 SVYNML 126
S++ M+
Sbjct: 457 SLWKMM 462
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
+VV S++ YC+ G ME HV L E + D + + +L+ +C+ A R
Sbjct: 295 NVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVH 354
Query: 89 VDMHRKGHQPEEELCSSLI 107
+M G + +C+SLI
Sbjct: 355 DNMIEIGVRTNTTICNSLI 373
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G EEA+ + + K D + ++ YCRTG + + V + E+
Sbjct: 302 LIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+ + + LI +CK + A + M+ +P+ ++L+
Sbjct: 362 VRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLV 408
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 2 ISAFCRGGCFEEAKQLAGDFEAK----YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57
I+ C+ G E+A++L D + D+Y +L CA GD+ + ++
Sbjct: 726 IAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHG-CAI--AGDINKAFTLRDEMA 782
Query: 58 ELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
I P+ T++ LIK CK A R + + +KG P ++LI L K +
Sbjct: 783 LKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVA 842
Query: 118 EAL 120
EA+
Sbjct: 843 EAM 845
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
++V N+++ C+ G+++ ++ KL + I+P+ T++ LI K A R
Sbjct: 789 NIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLK 848
Query: 89 VDMHRKG 95
M KG
Sbjct: 849 EKMIEKG 855
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+S F R +++A+ + D+V NS++ Y R G+ +++ L++
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
+ PD +++ +IK FC+ + A R + +M +G +P
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 107/279 (38%), Gaps = 40/279 (14%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ F + G + EA + + E D V N ++ AY R G + V+ + +
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T+ +I + K A + M G P ++++ LGK +E +
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMI 441
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180
+ ++ + S +A +L + + + KF
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLAL--------------------CGNKGMDKF------- 474
Query: 181 GNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKEL-LLKLLEWMTGQGYVVDSS 239
VN V + + + G+ D+ F+ I+ Y R E+ K+ MT G+ +
Sbjct: 475 -----VNRVFREMKSCGFEPDRDTFNTLISAY--GRCGSEVDASKMYGEMTRAGFNACVT 527
Query: 240 TRNLIL-----KNSHLFGRQLIADILSKQHMKSKSSKTL 273
T N +L K G +I+D+ SK +++S +L
Sbjct: 528 TYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSL 566
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP--- 63
RG C++ A+++ E K D+V N+++ +CR G M+ + ++ ++ E I P
Sbjct: 679 RGECWK-AEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIF 737
Query: 64 DYNTF 68
YNTF
Sbjct: 738 TYNTF 742
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/258 (17%), Positives = 99/258 (38%), Gaps = 44/258 (17%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----------- 77
DV ++L AY RTG E + + ++ E+ SP T+++++ F K
Sbjct: 209 DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268
Query: 78 -------------------------EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
E + A ++ G++P ++L+ GK
Sbjct: 269 LDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGK 328
Query: 113 MRAHSEALSVYNMLRYSKRSMCKA---LHEKILHILISGKLLKDAYVVVKDNSESISHPA 169
++EALSV L+ + + C A + +++ + K+A V++ ++ P
Sbjct: 329 AGVYTEALSV---LKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385
Query: 170 IKKFASAFVRLGNINLVNDVMKAIHATGYR--IDQGIFHIAIARYIAEREKKELLLKLLE 227
+ + G ++ +K ++ + + A+ + ++ + ++K+L
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLC 445
Query: 228 WMTGQGYVVDSSTRNLIL 245
M G + +T N +L
Sbjct: 446 DMKSNGCSPNRATWNTML 463
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVMHVMRKLD 57
+I FCR G +EA ++ + + + + N+ + Y G ++E V+ M K D
Sbjct: 707 VIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKND 766
Query: 58 ELAISPDYNTFHILIKYFCKEKMY 81
P+ TF +++ +C+ Y
Sbjct: 767 ---CRPNELTFKMVVDGYCRAGKY 787
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C+ E A ++ + + ++V ++L Y GDMES V+ ++ +
Sbjct: 197 LVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRG 256
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ +L+ +CK + A M DM + +P E +I L K + EA
Sbjct: 257 WYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEAR 316
Query: 121 SVYN 124
++++
Sbjct: 317 NMFD 320
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 60/145 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ + G E AK++ + + D ++ YC+ G VM +++
Sbjct: 232 ILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNE 291
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P+ T+ ++I+ CKEK A +M + P+ LC +I L + EA
Sbjct: 292 IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEAC 351
Query: 121 SVYNMLRYSKRSMCKALHEKILHIL 145
++ + + AL ++H L
Sbjct: 352 GLWRKMLKNNCMPDNALLSTLIHWL 376
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 5/229 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI A C+ EA+ + + + D L ++ A C ++ + RK+ +
Sbjct: 302 MIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNN 361
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD LI + CKE A R + D KG P ++LI + + +EA
Sbjct: 362 CMPDNALLSTLIHWLCKEGRVTEA-RKLFDEFEKGSIPSLLTYNTLIAGMCEKGELTEAG 420
Query: 121 SVYNMLRYSKRSMCKALHEKIL-HILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVR 179
+++ + Y ++ A +L L +K+ V+++ E P F F
Sbjct: 421 RLWDDM-YERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEG 479
Query: 180 LGNINLVNDVMKAIH--ATGYRIDQGIFHIAIARYIAEREKKELLLKLL 226
L + D MK + ++D+ + + + ++ E +K L LK L
Sbjct: 480 LQKLGKEEDAMKIVSMAVMNGKVDKESWELFLKKFAGELDKGVLPLKEL 528
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
++ N ++ A C+ D+ES V+ ++ + + P+ T+ ++ + A R +
Sbjct: 190 NIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVL 249
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122
+M +G P+ + L+ K+ SEA +V
Sbjct: 250 EEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 4/194 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F R E+A ++ + + V NS++ C G E M +L E
Sbjct: 492 LIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESG 551
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD +TF+ +I +CKE A+ + + +P+ C+ L+ L K +AL
Sbjct: 552 LLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKAL 611
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP---AIKKFASAF 177
+ +N L +R + + ++ K LK+AY ++ + E P F S
Sbjct: 612 NFFNTL-IEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLL 670
Query: 178 VRLGNINLVNDVMK 191
+ G ++ ++++K
Sbjct: 671 MEDGKLSETDELLK 684
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 52/102 (50%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
D+V ++++ AY + GD+ + +MR++ + I + T + ++ CKE+ A+ +
Sbjct: 415 DIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLL 474
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130
H++G +E +LI + +AL +++ ++ K
Sbjct: 475 NSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 102/232 (43%), Gaps = 24/232 (10%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVM-RKLDELAISPDYNTFHILIKYFCKEKMYILAYRT 87
+V N ++ YC G +E + ++ R + E ++PD T++ ++K K+
Sbjct: 203 NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK--RSMCKALHEKILHIL 145
++DM + G P ++L++ K+ + EA + +++ + +C +IL
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLC------TYNIL 316
Query: 146 ISGKL----------LKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195
I+G L DA +K + +++ LG +M+ +
Sbjct: 317 INGLCNAGSMREGLELMDAMKSLKLQPDVVTY---NTLIDGCFELGLSLEARKLMEQMEN 373
Query: 196 TGYRIDQGIFHIAIARYIAEREKKELLL-KLLEWMTGQGYVVDSSTRNLILK 246
G + +Q +I++ +++ + EK+E + K+ E + G+ D T + ++K
Sbjct: 374 DGVKANQVTHNISL-KWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIK 424
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 52/124 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C+ +EA L + D V +++ + R +E + + ++ ++
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+P +TF+ LI C LA ++ G P++ +S+I K +A
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAF 576
Query: 121 SVYN 124
YN
Sbjct: 577 EFYN 580
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A + G + K+L D + + V N+++ YC+ G ++ ++ + +
Sbjct: 246 ILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTN 305
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI---FHLG 111
+ PD T++ILI C M M QP+ ++LI F LG
Sbjct: 306 VLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELG 359
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C G E A QL +F + + +V+ + ++ +C G E ++ ++++
Sbjct: 208 LIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER 267
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
I PD TF+ILI K+ + M KG +P +++ L + + EA
Sbjct: 268 IEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEA 326
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 57/121 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
D LN ++ C +G++E+ + ++ + + P+ TF LI+ FC + + A++ +
Sbjct: 201 DACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLL 260
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148
M ++ +P+ + LI L K E + + ++ ++++L+ L+
Sbjct: 261 ERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDK 320
Query: 149 K 149
K
Sbjct: 321 K 321
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 43/98 (43%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G FEEA +L E + + D + N ++ + G +E + ++ ++
Sbjct: 243 LIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKG 302
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98
P+ T+ ++ +K + A M M G +P
Sbjct: 303 CEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISWGMRP 340
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ + FC F E E + + D+V N+++ +YCR G ++ ++ + +
Sbjct: 242 LTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRR 301
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK--MRAHSE 118
+ PD T+ LIK CK+ A++T M +G +P+ ++LI+ K M S+
Sbjct: 302 VVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSK 361
Query: 119 ALSVYNMLRYS---KRSMCKALHEKILHILISGKLLKDAYVVVK 159
L ++ ML S R CK + E + G+LL VV+
Sbjct: 362 KL-LHEMLGNSVVPDRFTCKVIVEGFVR---EGRLLSAVNFVVE 401
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 30/244 (12%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G EA Q + K D + N+++ AYC+ G M+ ++ ++ +
Sbjct: 312 LIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNS 371
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRA-- 115
+ PD T ++++ F +E + A +V++ R E+C LI L GK A
Sbjct: 372 VVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAK 431
Query: 116 -----------HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES 164
H YN L S S C A+ E +++ GKL K+ ++
Sbjct: 432 HLLDRIIEEEGHEAKPETYNNLIES-LSRCDAIEEA---LVLKGKL--------KNQNQV 479
Query: 165 ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER--EKKELL 222
+ + R+G +M + + + D I + Y E +K E L
Sbjct: 480 LDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAERL 539
Query: 223 LKLL 226
L L
Sbjct: 540 LSLF 543
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 18/141 (12%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92
N + +C + V + K++E PD T++ L+ +C+ A+ M+
Sbjct: 239 FNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMY 298
Query: 93 RKGHQPEEELCSSLI---------------FHLGKMRAHSEALSVYNMLRYS--KRSMCK 135
R+ P+ +SLI FH R YN L Y+ K M +
Sbjct: 299 RRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQ 358
Query: 136 ALHEKILHILISGKLLKDAYV 156
+K+LH ++ ++ D +
Sbjct: 359 Q-SKKLLHEMLGNSVVPDRFT 378
>sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240
OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1
Length = 629
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDK-----YDVVLLNSMLCAYCRTGDMESVMHVMRK 55
++ A G F+EA +L + +++ ++ N M+ YC G E M V R+
Sbjct: 316 VLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQ 375
Query: 56 LDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE---ELCSSLIFHLGK 112
+ + SPD +F+ L+ C ++ A + +M K +P+E L F GK
Sbjct: 376 MGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGK 435
Query: 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
+ E + Y + S A++ ++ LI L DA
Sbjct: 436 I---DEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA 474
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650,
mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2
SV=1
Length = 576
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 45/76 (59%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS + +GG +EA+++ + + K+ K V ++++ YC+ + + + ++ ++D
Sbjct: 448 IISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNEMDRFG 507
Query: 61 ISPDYNTFHILIKYFC 76
+ P+ + ++ LI+ FC
Sbjct: 508 VQPNADEYNKLIQSFC 523
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMR--KLDE 58
++ A + G +EAK++ E++ K DV ++ Y + G M+ ++ K
Sbjct: 413 VVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKH 472
Query: 59 LAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+SP T+H LI+ +CK + Y A + + +M R G QP + + LI
Sbjct: 473 KKLSP--VTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLI 519
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + CR ++AK L D +K + N ++ A +TGD++ V++ ++
Sbjct: 378 VIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLMESRG 437
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ ++I + K M A + + +K + +LI K+ + EAL
Sbjct: 438 LKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEAL 497
Query: 121 SVYN 124
+ N
Sbjct: 498 KLLN 501
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 93/215 (43%), Gaps = 4/215 (1%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93
N++L + ++G+ SV ++++ + I PD TF+ILI C E + + M M +
Sbjct: 162 NAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEK 221
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD 153
G+ P ++++ K A+ + + ++ + ++H L +
Sbjct: 222 SGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK 281
Query: 154 AYVVVKDNSESISHP---AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIA 210
Y++++D + + HP + F G + + + ++ + + G + F+ I
Sbjct: 282 GYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALID 341
Query: 211 RYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLIL 245
+I+E KE LK+ M +G + ++L
Sbjct: 342 GHISEGNFKE-ALKMFYMMEAKGLTPSEVSYGVLL 375
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C+GG EA++ A D V+ N++L A C++G++ + + ++ + +
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643
Query: 61 ISPDYNTFHILIKYFCKEKMYILA 84
I PD T+ LI C++ ++A
Sbjct: 644 ILPDSYTYTSLISGLCRKGKTVIA 667
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93
M+ C+ G ++ + ++ ++ + I PD T+ LI FCK + A + ++R
Sbjct: 407 TGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 466
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
G P + S+LI++ +M EA+ +Y
Sbjct: 467 VGLSPNGIIYSTLIYNCCRMGCLKEAIRIY 496
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G FE++ L E +V N++L YC+ G ++ + ++ +
Sbjct: 199 LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 258
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+ D T+++LI C+ Y + DM ++ P E ++LI
Sbjct: 259 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 305
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 99/248 (39%), Gaps = 4/248 (1%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I CR + L D + + V N+++ + G + ++ ++
Sbjct: 269 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SP++ TF+ LI E + A + M KG P E L+ L K A
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFAS---AF 177
Y ++ + + + + ++ L L +A V++ + S+ P I +++ F
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
++G +++ I+ G + I+ I KE +++ E M +G+ D
Sbjct: 449 CKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE-AIRIYEAMILEGHTRD 507
Query: 238 SSTRNLIL 245
T N+++
Sbjct: 508 HFTFNVLV 515
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64
+C+ G F+ A +L ++K DV N ++ CR+ + ++R + + I P+
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297
Query: 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
T++ LI F E ++A + + +M G P ++LI
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK---MYILAY 85
D+V N+M+ Y R G +E ++ ++ P+ T++IL+ + K K L Y
Sbjct: 718 DIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 777
Query: 86 RTMVDMHRKGHQPEEELCSSLIFHL 110
R+++ G P++ C SL+ +
Sbjct: 778 RSII---LNGILPDKLTCHSLVLGI 799
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I AFC+ G +EA + + + D+V+ S++ +C G+++ + ++ E
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP T++ LI+ FCK A M +G +P + LI L + EAL
Sbjct: 278 DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVK 159
+ N++ + I++ L L+ DA +V+
Sbjct: 338 QLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVE 376
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S+ C+ G ++A +L + + + DVV N M+ + GD++S ++ +
Sbjct: 535 LLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG 594
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
+SPD T+ LI F K A M G +P+ +C S++
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVL 641
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI FC+ G AK L + V N +L + C+ G ++ + ++
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD +F+I+I K A +V M R G P+ S LI K+ EA+
Sbjct: 560 NFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAI 619
Query: 121 SVYN 124
S ++
Sbjct: 620 SFFD 623
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G E+A +LA + + + +V ++ A+C+ G M+ M ++++ +
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMG 242
Query: 61 ISPDYNTFHILIKYFC 76
+ D + LI+ FC
Sbjct: 243 LEADLVVYTSLIRGFC 258
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 94/215 (43%), Gaps = 18/215 (8%)
Query: 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVD 90
+LLNS L + GD+ M + +++ + I + +T+ +I FCK M +A +
Sbjct: 464 ILLNSTL----KAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCK 519
Query: 91 MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKI-LHILISGK 149
M QP + L+ L K + +A ++ ++ + + +I+I G
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNN-----FPDVVSFNIMIDGS 574
Query: 150 L----LKDAYVVVKDNSESISHPAI---KKFASAFVRLGNINLVNDVMKAIHATGYRIDQ 202
L +K A ++ S + P + K + F++LG ++ + +G+ D
Sbjct: 575 LKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Query: 203 GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237
I ++ +Y + + + L +L++ + + V+D
Sbjct: 635 HICD-SVLKYCISQGETDKLTELVKKLVDKDIVLD 668
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMES---VMHVMRKLD 57
+I+ C+ G +A ++ + + + D + N +L C GD++ ++++M K D
Sbjct: 358 IINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLK-D 416
Query: 58 ELAISPDYNTFHILIKYFCKE 78
PD +++ LI CKE
Sbjct: 417 SSYTDPDVISYNALIHGLCKE 437
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FCR +A +L + K +VV S++ A+ R G+ ++ ++ EL
Sbjct: 331 LIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELG 390
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD + ++ + CK AY DM P+ +SLI L + +EA+
Sbjct: 391 LSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAI 450
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVV 157
++ ++ + + + I+ LI GK L AY V
Sbjct: 451 KLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKV 487
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86
K V+ N+++ +C+ G +E + + ++ PD T+++L+ Y+ M A
Sbjct: 217 KLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEG 276
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL-HEKILHIL 145
M +M R G Q + + L+ ++ +H + + + R C + + ++
Sbjct: 277 VMAEMVRSGIQLDAYSYNQLLKRHCRV-SHPDKCYNFMVKEMEPRGFCDVVSYSTLIETF 335
Query: 146 ISGKLLKDAYVVVKDNSESISHPAIKKFAS---AFVRLGNINLVNDVMKAIHATGYRIDQ 202
+ AY + ++ + + + S AF+R GN ++ ++ + G D+
Sbjct: 336 CRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDR 395
Query: 203 GIFHIAI 209
IF+ I
Sbjct: 396 -IFYTTI 401
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I AF R G AK+L D + ++L C++G+++ V + E
Sbjct: 366 LIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHE 425
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+PD +++ LI C+ A + DM K P+E +I L + + S A
Sbjct: 426 ITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAY 485
Query: 121 SVYNML 126
V++ +
Sbjct: 486 KVWDQM 491
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64
C+ G ++A + D D + NS++ CR+G + + + + PD
Sbjct: 405 LCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPD 464
Query: 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107
TF +I + K AY+ M KG + ++ +LI
Sbjct: 465 ELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLI 507
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 13/214 (6%)
Query: 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE 100
C+ + + ++ ++ L PD F++ + C+E A +T M ++G +P+
Sbjct: 90 CKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDV 149
Query: 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS----MCKALHEKILHILISGKLLKDAYV 156
+ LI L + ++A+ ++N + S S C AL + H + + AY
Sbjct: 150 VSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCH----ARKVDLAYE 205
Query: 157 VVKDNSES----ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARY 212
+V + +S +S S F + G I + + G D +++ + Y
Sbjct: 206 MVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYY 265
Query: 213 IAEREKKELLLKLLEWMTGQGYVVDSSTRNLILK 246
K + E M G +D+ + N +LK
Sbjct: 266 YDNNMLKRAEGVMAE-MVRSGIQLDAYSYNQLLK 298
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTM 88
DVV ++++ +CR + + ++ + + + T+ LIK F +E +A + +
Sbjct: 324 DVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLL 383
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
M G P+ ++++ HL K +A V+N
Sbjct: 384 DQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFN 419
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 108/260 (41%), Gaps = 9/260 (3%)
Query: 12 EEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHIL 71
++A L GD +V N +L A + E V+ + ++ L IS D T+ I
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIF 124
Query: 72 IKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131
I FC+ LA + M + G++P+ SSL+ + S+A+++ + +
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 132 SMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFAS---AFVRLGNINLVND 188
++H L +A +V + P + + + + G+I+L +
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALN 244
Query: 189 VMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNS 248
++ + A + + IF+ I R E+ + L M +G + T N ++
Sbjct: 245 LLNKMEAARIKANVVIFNTIIDSLCKYRH-VEVAVDLFTEMETKGIRPNVVTYNSLINCL 303
Query: 249 HLFGR-----QLIADILSKQ 263
+GR +L++++L K+
Sbjct: 304 CNYGRWSDASRLLSNMLEKK 323
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + C+ E A L + E K + +VV NS++ C G ++ + E
Sbjct: 264 IIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKK 323
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99
I+P+ TF+ LI F KE + A + +M ++ P+
Sbjct: 324 INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G + +A +L + K +VV N+++ A+ + G + + ++ + +
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358
Query: 61 ISPDYNTFHILIKYFC 76
I PD T+++LI FC
Sbjct: 359 IDPDTITYNLLINGFC 374
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 54/126 (42%)
Query: 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++SA + FE L + +D+ + + +CR + + V+ K+ +L
Sbjct: 89 LLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLG 148
Query: 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T L+ +C K A + M G++P+ ++LI L SEA+
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 121 SVYNML 126
++ + +
Sbjct: 209 ALVDQM 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,527,279
Number of Sequences: 539616
Number of extensions: 3746834
Number of successful extensions: 14171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 12462
Number of HSP's gapped (non-prelim): 1359
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)