Query 023915
Match_columns 275
No_of_seqs 326 out of 1443
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.1E-49 4.5E-54 355.2 32.8 160 2-161 479-640 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.6E-49 5.5E-54 354.7 33.0 267 1-268 513-789 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.6E-45 5.7E-50 324.5 28.2 258 1-264 195-488 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 7.4E-43 1.6E-47 315.5 28.3 260 1-266 158-452 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1E-42 2.2E-47 308.0 27.6 258 2-265 130-387 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-42 2.5E-47 314.2 27.4 256 2-264 330-651 (857)
7 PRK11788 tetratricopeptide rep 99.8 3.9E-18 8.6E-23 142.1 28.1 249 6-259 46-303 (389)
8 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.9E-23 144.2 25.1 260 2-268 76-353 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 2.5E-15 5.3E-20 137.6 30.0 254 3-264 609-897 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 7.5E-15 1.6E-19 134.5 30.5 243 4-253 576-819 (899)
11 KOG4422 Uncharacterized conser 99.7 2.2E-15 4.7E-20 119.5 22.7 227 2-233 214-463 (625)
12 KOG4422 Uncharacterized conser 99.7 8.6E-15 1.9E-19 116.2 22.0 220 28-252 205-447 (625)
13 PF13041 PPR_2: PPR repeat fam 99.7 2.9E-16 6.2E-21 90.3 6.1 50 28-77 1-50 (50)
14 PF13041 PPR_2: PPR repeat fam 99.6 2.2E-15 4.8E-20 86.6 6.5 50 63-112 1-50 (50)
15 PRK15174 Vi polysaccharide exp 99.6 6.9E-12 1.5E-16 110.7 29.4 151 6-161 87-238 (656)
16 KOG4318 Bicoid mRNA stability 99.6 6.2E-14 1.4E-18 120.1 15.6 221 16-252 11-285 (1088)
17 PRK15174 Vi polysaccharide exp 99.6 2.2E-11 4.8E-16 107.5 29.8 252 3-263 118-377 (656)
18 PF13429 TPR_15: Tetratricopep 99.5 2.3E-13 5.1E-18 108.3 12.8 256 3-265 16-275 (280)
19 TIGR00990 3a0801s09 mitochondr 99.5 1.1E-10 2.4E-15 103.0 30.2 245 8-260 307-564 (615)
20 PRK10747 putative protoheme IX 99.5 3.3E-10 7.2E-15 94.5 27.7 244 8-261 97-384 (398)
21 TIGR00990 3a0801s09 mitochondr 99.4 2.9E-10 6.3E-15 100.4 27.9 222 4-232 340-571 (615)
22 TIGR00540 hemY_coli hemY prote 99.4 5.9E-10 1.3E-14 93.4 26.6 252 6-262 129-394 (409)
23 TIGR02521 type_IV_pilW type IV 99.4 9.1E-10 2E-14 84.7 25.4 199 29-231 30-231 (234)
24 PF13429 TPR_15: Tetratricopep 99.4 8.4E-12 1.8E-16 99.4 13.2 219 5-230 54-275 (280)
25 PRK11447 cellulose synthase su 99.4 2.8E-09 6E-14 100.4 30.9 252 4-265 360-698 (1157)
26 TIGR02521 type_IV_pilW type IV 99.4 1.2E-09 2.7E-14 84.0 23.1 190 3-195 39-231 (234)
27 PRK10747 putative protoheme IX 99.4 1.1E-09 2.3E-14 91.5 24.1 214 6-230 129-388 (398)
28 PRK11447 cellulose synthase su 99.3 3.3E-09 7.2E-14 99.9 28.5 246 4-260 470-733 (1157)
29 TIGR00540 hemY_coli hemY prote 99.3 1.9E-09 4.1E-14 90.4 23.5 223 4-229 162-396 (409)
30 COG3071 HemY Uncharacterized e 99.3 3E-08 6.5E-13 78.8 28.0 251 7-262 96-385 (400)
31 PRK12370 invasion protein regu 99.3 5E-09 1.1E-13 91.2 25.3 215 8-233 317-536 (553)
32 PRK09782 bacteriophage N4 rece 99.3 9E-09 1.9E-13 94.0 27.7 215 8-232 489-706 (987)
33 KOG4318 Bicoid mRNA stability 99.3 1.6E-10 3.4E-15 99.7 15.2 204 51-270 11-273 (1088)
34 COG2956 Predicted N-acetylgluc 99.3 8.4E-09 1.8E-13 79.8 22.1 220 6-231 46-277 (389)
35 PRK09782 bacteriophage N4 rece 99.2 2.1E-08 4.5E-13 91.7 26.6 216 5-230 519-738 (987)
36 PRK12370 invasion protein regu 99.2 3.7E-08 8.1E-13 85.8 27.2 230 9-248 275-519 (553)
37 PRK14574 hmsH outer membrane p 99.2 7.7E-08 1.7E-12 86.4 28.6 119 5-129 44-165 (822)
38 KOG4626 O-linked N-acetylgluco 99.2 4.7E-09 1E-13 87.9 19.2 207 33-248 289-500 (966)
39 PRK10049 pgaA outer membrane p 99.2 6.7E-08 1.5E-12 87.4 28.4 181 76-261 248-450 (765)
40 PF12854 PPR_1: PPR repeat 99.2 3.4E-11 7.4E-16 62.4 4.0 32 25-56 2-33 (34)
41 PRK10049 pgaA outer membrane p 99.2 1E-07 2.2E-12 86.2 28.4 222 4-232 58-339 (765)
42 KOG2003 TPR repeat-containing 99.2 4.7E-08 1E-12 79.2 23.0 243 4-252 428-708 (840)
43 KOG1126 DNA-binding cell divis 99.2 8.3E-09 1.8E-13 86.8 19.4 241 3-257 361-610 (638)
44 KOG1126 DNA-binding cell divis 99.2 1.5E-08 3.1E-13 85.4 20.1 212 11-232 335-552 (638)
45 KOG4626 O-linked N-acetylgluco 99.1 1.5E-08 3.3E-13 84.9 19.2 238 8-257 231-475 (966)
46 PRK14574 hmsH outer membrane p 99.1 3.1E-07 6.7E-12 82.6 29.0 255 4-263 111-441 (822)
47 PF12854 PPR_1: PPR repeat 99.1 9.7E-11 2.1E-15 60.7 3.6 32 60-91 2-33 (34)
48 COG2956 Predicted N-acetylgluc 99.1 1.1E-07 2.5E-12 73.7 21.5 240 3-249 77-326 (389)
49 COG3071 HemY Uncharacterized e 99.1 3.1E-07 6.7E-12 73.2 23.2 223 6-237 164-395 (400)
50 KOG1840 Kinesin light chain [C 99.1 1.7E-07 3.6E-12 79.1 22.6 228 2-230 206-477 (508)
51 KOG1840 Kinesin light chain [C 99.0 4.5E-07 9.9E-12 76.6 23.7 232 31-263 200-475 (508)
52 KOG1155 Anaphase-promoting com 99.0 1.6E-06 3.4E-11 70.7 25.1 158 68-229 333-492 (559)
53 KOG1155 Anaphase-promoting com 99.0 1.8E-06 3.8E-11 70.4 25.1 146 45-194 345-493 (559)
54 PRK11189 lipoprotein NlpI; Pro 99.0 2.7E-06 5.7E-11 68.3 26.4 227 8-244 39-276 (296)
55 KOG1129 TPR repeat-containing 98.9 1.4E-07 3E-12 73.5 16.1 221 3-231 231-457 (478)
56 KOG2076 RNA polymerase III tra 98.9 6E-06 1.3E-10 72.3 27.5 254 4-263 149-474 (895)
57 PF04733 Coatomer_E: Coatomer 98.9 1.7E-07 3.7E-12 74.4 16.4 234 7-254 13-251 (290)
58 PRK11189 lipoprotein NlpI; Pro 98.9 4.9E-06 1.1E-10 66.8 24.9 193 4-207 73-275 (296)
59 PF12569 NARP1: NMDA receptor- 98.9 2.2E-05 4.7E-10 67.2 28.7 225 3-236 12-295 (517)
60 KOG2003 TPR repeat-containing 98.8 2.8E-06 6.1E-11 69.2 20.7 201 7-212 502-704 (840)
61 COG3063 PilF Tfp pilus assembl 98.8 1.7E-05 3.6E-10 59.1 22.8 203 32-241 37-243 (250)
62 TIGR00756 PPR pentatricopeptid 98.8 8.7E-09 1.9E-13 54.1 3.8 33 32-64 2-34 (35)
63 PF12569 NARP1: NMDA receptor- 98.7 3.1E-05 6.7E-10 66.3 25.4 242 3-247 46-364 (517)
64 PF13812 PPR_3: Pentatricopept 98.7 2E-08 4.4E-13 52.3 4.0 33 31-63 2-34 (34)
65 COG3063 PilF Tfp pilus assembl 98.7 2.7E-05 6E-10 58.0 21.5 199 3-207 43-245 (250)
66 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.4E-11 69.0 15.2 217 4-232 44-265 (290)
67 TIGR00756 PPR pentatricopeptid 98.7 4.9E-08 1.1E-12 51.1 4.2 35 66-100 1-35 (35)
68 PF13812 PPR_3: Pentatricopept 98.6 6.3E-08 1.4E-12 50.4 4.2 33 66-98 2-34 (34)
69 PF08579 RPM2: Mitochondrial r 98.6 1.2E-06 2.6E-11 57.6 10.4 80 172-251 30-117 (120)
70 PF08579 RPM2: Mitochondrial r 98.6 8.2E-07 1.8E-11 58.3 9.6 81 32-112 27-116 (120)
71 KOG0547 Translocase of outer m 98.6 2.5E-05 5.5E-10 64.3 19.9 217 7-231 338-565 (606)
72 KOG4340 Uncharacterized conser 98.6 6.2E-06 1.4E-10 63.8 15.2 201 25-235 5-210 (459)
73 KOG2002 TPR-containing nuclear 98.6 4.3E-05 9.2E-10 67.8 21.4 224 9-235 544-801 (1018)
74 cd05804 StaR_like StaR_like; a 98.6 0.00018 3.8E-09 59.4 24.7 223 5-232 53-293 (355)
75 PF06239 ECSIT: Evolutionarily 98.5 3.5E-06 7.5E-11 62.3 12.5 89 164-252 44-152 (228)
76 KOG2076 RNA polymerase III tra 98.5 0.00019 4.1E-09 63.4 24.5 247 3-252 249-540 (895)
77 TIGR03302 OM_YfiO outer membra 98.5 2.8E-05 6.2E-10 60.2 17.3 166 29-196 32-232 (235)
78 KOG1173 Anaphase-promoting com 98.5 0.00021 4.5E-09 60.0 22.7 240 4-251 253-535 (611)
79 PF10037 MRP-S27: Mitochondria 98.5 3.4E-06 7.4E-11 69.8 12.5 121 130-251 61-186 (429)
80 PF10037 MRP-S27: Mitochondria 98.5 5.6E-06 1.2E-10 68.6 13.5 124 25-148 61-186 (429)
81 PF01535 PPR: PPR repeat; Int 98.5 1.9E-07 4.2E-12 47.3 3.3 29 32-60 2-30 (31)
82 KOG1129 TPR repeat-containing 98.5 6.8E-06 1.5E-10 64.3 12.9 194 3-201 264-461 (478)
83 TIGR03302 OM_YfiO outer membra 98.5 6.5E-05 1.4E-09 58.2 18.8 167 64-232 32-232 (235)
84 cd05804 StaR_like StaR_like; a 98.4 0.00046 9.9E-09 57.0 23.8 220 8-231 93-335 (355)
85 KOG0495 HAT repeat protein [RN 98.4 0.00099 2.1E-08 57.3 26.6 251 6-264 595-877 (913)
86 KOG1070 rRNA processing protei 98.4 0.00059 1.3E-08 63.2 24.7 225 29-259 1457-1692(1710)
87 PF01535 PPR: PPR repeat; Int 98.4 6.9E-07 1.5E-11 45.2 3.6 30 67-96 2-31 (31)
88 PF06239 ECSIT: Evolutionarily 98.3 1.1E-05 2.4E-10 59.7 10.4 90 27-116 44-154 (228)
89 KOG1173 Anaphase-promoting com 98.3 0.00037 8.1E-09 58.6 20.3 199 9-213 326-533 (611)
90 KOG0547 Translocase of outer m 98.3 0.00011 2.3E-09 60.8 16.4 199 4-212 369-577 (606)
91 PRK10370 formate-dependent nit 98.3 0.00011 2.3E-09 55.3 15.0 147 3-164 24-173 (198)
92 KOG1070 rRNA processing protei 98.3 0.00036 7.9E-09 64.5 20.3 212 4-219 1467-1687(1710)
93 KOG2002 TPR-containing nuclear 98.2 0.0021 4.5E-08 57.6 24.3 184 66-252 271-466 (1018)
94 PRK14720 transcript cleavage f 98.2 0.0007 1.5E-08 61.3 21.7 55 69-125 120-174 (906)
95 KOG3081 Vesicle coat complex C 98.2 0.00019 4.2E-09 54.8 15.3 171 16-196 94-271 (299)
96 COG5010 TadD Flp pilus assembl 98.2 0.00042 9.1E-09 52.8 16.9 155 34-192 70-227 (257)
97 COG4783 Putative Zn-dependent 98.2 0.00023 5E-09 58.8 16.5 161 30-211 307-471 (484)
98 PRK15359 type III secretion sy 98.2 0.00024 5.1E-09 50.5 14.7 95 33-129 27-121 (144)
99 KOG1128 Uncharacterized conser 98.2 0.00022 4.7E-09 61.7 16.4 207 3-231 406-615 (777)
100 KOG3616 Selective LIM binding 98.2 0.00014 2.9E-09 63.2 15.2 137 3-161 740-876 (1636)
101 PRK15179 Vi polysaccharide bio 98.2 0.00071 1.5E-08 60.3 20.1 132 27-163 83-216 (694)
102 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.2E-05 1.8E-09 61.4 13.1 126 32-163 171-296 (395)
103 KOG3081 Vesicle coat complex C 98.1 0.0019 4.1E-08 49.5 20.4 182 62-252 69-255 (299)
104 TIGR02552 LcrH_SycD type III s 98.1 0.00017 3.6E-09 50.6 12.8 99 29-129 16-114 (135)
105 PF09976 TPR_21: Tetratricopep 98.1 0.00065 1.4E-08 48.4 15.6 22 73-94 56-77 (145)
106 PF09976 TPR_21: Tetratricopep 98.0 0.00083 1.8E-08 47.8 15.4 124 67-192 14-143 (145)
107 KOG2376 Signal recognition par 98.0 0.0021 4.6E-08 54.5 19.3 120 2-131 19-141 (652)
108 TIGR02552 LcrH_SycD type III s 98.0 0.00018 3.9E-09 50.4 11.5 100 3-106 25-124 (135)
109 PRK10370 formate-dependent nit 98.0 0.00096 2.1E-08 50.2 15.8 125 78-205 52-181 (198)
110 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0012 2.5E-08 54.7 17.2 122 68-194 172-295 (395)
111 PRK15179 Vi polysaccharide bio 98.0 0.0076 1.6E-07 54.0 23.1 145 61-209 82-229 (694)
112 KOG1128 Uncharacterized conser 98.0 0.00022 4.7E-09 61.7 12.9 184 1-195 430-615 (777)
113 PRK04841 transcriptional regul 98.0 0.0057 1.2E-07 57.2 23.5 228 4-232 500-760 (903)
114 PRK15359 type III secretion sy 98.0 0.00036 7.7E-09 49.6 12.1 94 4-101 33-126 (144)
115 KOG3785 Uncharacterized conser 98.0 0.0047 1E-07 49.5 19.0 149 46-196 339-490 (557)
116 PRK04841 transcriptional regul 97.9 0.023 5E-07 53.2 26.2 249 5-254 462-747 (903)
117 COG4783 Putative Zn-dependent 97.9 0.0052 1.1E-07 51.1 18.6 199 27-249 271-473 (484)
118 PF12895 Apc3: Anaphase-promot 97.9 6.6E-05 1.4E-09 47.9 6.2 80 8-90 2-83 (84)
119 cd00189 TPR Tetratricopeptide 97.8 0.00048 1.1E-08 44.1 10.4 93 33-127 3-95 (100)
120 PLN02789 farnesyltranstransfer 97.8 0.011 2.4E-07 48.0 24.2 205 4-213 46-266 (320)
121 KOG2053 Mitochondrial inherita 97.8 0.018 3.9E-07 51.5 21.8 109 4-118 18-128 (932)
122 KOG4340 Uncharacterized conser 97.8 0.0097 2.1E-07 46.6 19.4 243 3-252 18-324 (459)
123 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.001 2.2E-08 45.3 11.6 97 32-130 4-106 (119)
124 COG5010 TadD Flp pilus assembl 97.8 0.0092 2E-07 45.7 17.7 158 69-230 70-229 (257)
125 KOG0495 HAT repeat protein [RN 97.8 0.022 4.8E-07 49.5 27.1 250 6-259 490-774 (913)
126 KOG1914 mRNA cleavage and poly 97.8 0.011 2.3E-07 50.0 18.6 146 46-195 347-500 (656)
127 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0016 3.4E-08 44.3 12.0 88 5-94 12-105 (119)
128 KOG1125 TPR repeat-containing 97.7 0.0093 2E-07 50.6 18.0 242 5-255 295-559 (579)
129 KOG1156 N-terminal acetyltrans 97.7 0.027 5.9E-07 48.6 21.8 200 5-211 51-261 (700)
130 CHL00033 ycf3 photosystem I as 97.7 0.0023 5E-08 46.7 12.6 113 11-124 15-137 (168)
131 PF14559 TPR_19: Tetratricopep 97.7 0.00036 7.8E-09 42.4 7.0 64 6-72 2-65 (68)
132 KOG2053 Mitochondrial inherita 97.7 0.041 8.9E-07 49.3 24.8 189 5-197 53-256 (932)
133 KOG3785 Uncharacterized conser 97.6 0.011 2.3E-07 47.5 16.3 192 35-232 290-490 (557)
134 PLN03088 SGT1, suppressor of 97.6 0.0022 4.7E-08 53.0 13.1 99 4-107 11-110 (356)
135 cd00189 TPR Tetratricopeptide 97.6 0.0022 4.8E-08 40.9 10.7 92 68-161 3-94 (100)
136 PRK10866 outer membrane biogen 97.6 0.021 4.5E-07 44.5 18.6 57 173-230 181-239 (243)
137 PF12895 Apc3: Anaphase-promot 97.6 0.00031 6.7E-09 44.8 6.2 19 72-90 32-50 (84)
138 KOG1174 Anaphase-promoting com 97.6 0.032 6.9E-07 45.8 22.3 151 5-159 206-392 (564)
139 PF05843 Suf: Suppressor of fo 97.5 0.0073 1.6E-07 48.1 14.7 127 67-195 3-135 (280)
140 PRK14720 transcript cleavage f 97.5 0.031 6.8E-07 51.1 20.0 176 5-213 93-268 (906)
141 PF05843 Suf: Suppressor of fo 97.5 0.0041 8.9E-08 49.5 13.2 131 31-163 2-135 (280)
142 KOG3616 Selective LIM binding 97.5 0.0071 1.5E-07 53.1 15.2 108 108-226 740-847 (1636)
143 KOG3617 WD40 and TPR repeat-co 97.5 0.014 3E-07 52.0 16.9 83 4-93 737-828 (1416)
144 KOG1915 Cell cycle control pro 97.5 0.042 9E-07 46.0 23.4 187 43-236 154-354 (677)
145 KOG1914 mRNA cleavage and poly 97.5 0.029 6.4E-07 47.5 17.9 165 81-248 347-520 (656)
146 PF12921 ATP13: Mitochondrial 97.5 0.0017 3.8E-08 44.7 9.2 98 29-146 1-99 (126)
147 PRK02603 photosystem I assembl 97.5 0.015 3.3E-07 42.6 14.6 92 29-121 34-127 (172)
148 CHL00033 ycf3 photosystem I as 97.5 0.0082 1.8E-07 43.8 13.2 65 65-129 35-101 (168)
149 KOG3060 Uncharacterized conser 97.4 0.031 6.7E-07 42.8 22.5 185 43-232 25-220 (289)
150 KOG2047 mRNA splicing factor [ 97.4 0.066 1.4E-06 46.5 25.0 191 2-197 255-507 (835)
151 KOG1915 Cell cycle control pro 97.4 0.054 1.2E-06 45.4 27.0 81 7-91 153-233 (677)
152 KOG0985 Vesicle coat protein c 97.4 0.021 4.5E-07 52.1 17.0 101 8-122 1088-1188(1666)
153 PF12921 ATP13: Mitochondrial 97.4 0.0038 8.3E-08 43.0 10.1 93 1-113 8-101 (126)
154 PF13432 TPR_16: Tetratricopep 97.4 0.00097 2.1E-08 40.1 6.4 54 4-58 6-59 (65)
155 PRK02603 photosystem I assembl 97.4 0.016 3.4E-07 42.5 14.0 87 66-153 36-124 (172)
156 PF03704 BTAD: Bacterial trans 97.4 0.011 2.4E-07 42.0 12.6 69 68-137 65-138 (146)
157 PRK15363 pathogenicity island 97.4 0.0053 1.2E-07 43.6 10.4 96 31-129 36-132 (157)
158 KOG3941 Intermediate in Toll s 97.3 0.0062 1.3E-07 47.3 11.2 87 165-252 65-172 (406)
159 KOG2376 Signal recognition par 97.3 0.089 1.9E-06 45.2 25.5 127 140-268 381-521 (652)
160 PF14938 SNAP: Soluble NSF att 97.3 0.059 1.3E-06 43.0 19.2 179 32-212 37-245 (282)
161 KOG0985 Vesicle coat protein c 97.3 0.14 3E-06 47.1 22.7 160 6-191 1059-1218(1666)
162 KOG1156 N-terminal acetyltrans 97.3 0.099 2.1E-06 45.4 23.8 101 132-234 366-470 (700)
163 KOG3941 Intermediate in Toll s 97.3 0.003 6.4E-08 49.0 9.1 101 27-127 64-186 (406)
164 PF04840 Vps16_C: Vps16, C-ter 97.2 0.045 9.8E-07 44.3 16.0 124 65-211 177-300 (319)
165 KOG1125 TPR repeat-containing 97.2 0.016 3.5E-07 49.2 13.3 93 28-124 428-522 (579)
166 PF12688 TPR_5: Tetratrico pep 97.2 0.034 7.3E-07 38.0 12.6 85 39-125 10-100 (120)
167 KOG1174 Anaphase-promoting com 97.2 0.1 2.2E-06 43.1 19.1 196 27-228 191-393 (564)
168 PF03704 BTAD: Bacterial trans 97.2 0.0018 3.8E-08 46.1 6.5 73 30-103 62-139 (146)
169 PLN03088 SGT1, suppressor of 97.1 0.019 4.2E-07 47.4 13.0 91 37-130 9-100 (356)
170 PF14559 TPR_19: Tetratricopep 97.1 0.0028 6E-08 38.4 6.1 48 148-195 4-53 (68)
171 PLN02789 farnesyltranstransfer 97.1 0.12 2.5E-06 42.1 24.0 211 32-250 39-267 (320)
172 PF07035 Mic1: Colon cancer-as 97.1 0.061 1.3E-06 38.9 15.8 134 50-196 14-149 (167)
173 PF13525 YfiO: Outer membrane 97.1 0.075 1.6E-06 40.2 15.0 53 40-94 15-71 (203)
174 smart00299 CLH Clathrin heavy 97.1 0.051 1.1E-06 38.3 13.2 126 33-178 10-136 (140)
175 PF12688 TPR_5: Tetratrico pep 97.0 0.051 1.1E-06 37.1 12.6 88 73-160 9-100 (120)
176 KOG4162 Predicted calmodulin-b 97.0 0.22 4.7E-06 44.2 21.3 53 5-57 488-540 (799)
177 PF14938 SNAP: Soluble NSF att 97.0 0.13 2.9E-06 41.0 19.1 190 45-252 30-249 (282)
178 PRK10866 outer membrane biogen 97.0 0.12 2.6E-06 40.2 18.0 161 32-195 35-240 (243)
179 PRK10153 DNA-binding transcrip 96.9 0.13 2.7E-06 44.8 16.7 69 135-205 420-489 (517)
180 KOG0553 TPR repeat-containing 96.9 0.025 5.4E-07 44.3 11.1 82 41-126 92-175 (304)
181 smart00299 CLH Clathrin heavy 96.9 0.088 1.9E-06 37.1 15.0 125 69-213 11-136 (140)
182 PF13432 TPR_16: Tetratricopep 96.8 0.0098 2.1E-07 35.6 6.8 53 39-93 6-59 (65)
183 PF13371 TPR_9: Tetratricopept 96.8 0.014 3E-07 35.8 7.6 55 3-58 3-57 (73)
184 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.086 1.9E-06 43.9 13.7 144 66-213 398-546 (660)
185 PF13170 DUF4003: Protein of u 96.8 0.18 3.9E-06 40.5 15.4 40 31-70 61-102 (297)
186 PRK15363 pathogenicity island 96.8 0.084 1.8E-06 37.7 12.0 94 67-163 37-131 (157)
187 PF04840 Vps16_C: Vps16, C-ter 96.8 0.22 4.8E-06 40.4 20.5 83 138-228 180-262 (319)
188 PRK10803 tol-pal system protei 96.8 0.059 1.3E-06 42.4 12.4 94 68-163 146-245 (263)
189 PF13424 TPR_12: Tetratricopep 96.8 0.0073 1.6E-07 37.7 6.1 62 31-92 6-73 (78)
190 KOG3617 WD40 and TPR repeat-co 96.7 0.18 3.8E-06 45.4 15.8 53 138-193 941-993 (1416)
191 PRK10153 DNA-binding transcrip 96.7 0.1 2.3E-06 45.3 14.4 143 24-170 331-489 (517)
192 KOG3060 Uncharacterized conser 96.7 0.2 4.4E-06 38.5 20.9 186 7-196 24-220 (289)
193 PF13414 TPR_11: TPR repeat; P 96.6 0.014 3E-07 35.4 6.7 61 30-92 3-65 (69)
194 PRK10803 tol-pal system protei 96.6 0.11 2.4E-06 40.9 13.2 102 100-203 143-251 (263)
195 PF13414 TPR_11: TPR repeat; P 96.6 0.018 3.9E-07 34.9 6.9 64 64-128 2-66 (69)
196 KOG2047 mRNA splicing factor [ 96.5 0.52 1.1E-05 41.3 25.1 19 5-23 397-415 (835)
197 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.13 2.8E-06 43.1 12.8 64 29-94 74-141 (453)
198 PF09205 DUF1955: Domain of un 96.4 0.17 3.7E-06 34.9 12.8 58 140-197 91-150 (161)
199 KOG1127 TPR repeat-containing 96.4 0.66 1.4E-05 42.8 17.3 159 66-230 493-657 (1238)
200 KOG2796 Uncharacterized conser 96.3 0.35 7.6E-06 37.6 15.9 142 68-211 180-328 (366)
201 KOG2796 Uncharacterized conser 96.3 0.38 8.2E-06 37.4 14.5 136 32-168 179-319 (366)
202 COG4235 Cytochrome c biogenesi 96.2 0.48 1E-05 37.5 14.6 98 29-129 155-256 (287)
203 KOG0624 dsRNA-activated protei 96.1 0.58 1.3E-05 37.9 21.8 220 4-229 115-367 (504)
204 PF13371 TPR_9: Tetratricopept 96.0 0.046 9.9E-07 33.4 6.6 53 39-93 4-57 (73)
205 KOG1538 Uncharacterized conser 96.0 0.99 2.1E-05 39.8 16.8 204 13-234 618-848 (1081)
206 KOG2114 Vacuolar assembly/sort 96.0 0.48 1E-05 42.7 14.4 177 33-230 337-517 (933)
207 PF13424 TPR_12: Tetratricopep 96.0 0.019 4E-07 35.8 4.6 61 66-126 6-72 (78)
208 KOG0548 Molecular co-chaperone 95.8 1.1 2.3E-05 38.4 19.7 214 3-231 232-454 (539)
209 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.91 2E-05 38.2 14.4 148 30-180 397-548 (660)
210 PF10300 DUF3808: Protein of u 95.8 1.1 2.5E-05 38.6 17.4 159 69-230 192-374 (468)
211 KOG0553 TPR repeat-containing 95.8 0.26 5.5E-06 38.9 10.8 96 75-172 91-187 (304)
212 PF10300 DUF3808: Protein of u 95.8 1.1 2.5E-05 38.6 15.9 159 2-163 195-375 (468)
213 PF04053 Coatomer_WDAD: Coatom 95.6 0.56 1.2E-05 40.0 13.4 104 68-195 298-401 (443)
214 KOG0548 Molecular co-chaperone 95.6 1.3 2.8E-05 37.9 23.5 89 3-94 10-99 (539)
215 PRK15331 chaperone protein Sic 95.5 0.26 5.6E-06 35.4 9.1 88 39-129 46-134 (165)
216 PF13170 DUF4003: Protein of u 95.4 1.1 2.4E-05 36.0 15.4 149 81-231 78-249 (297)
217 KOG1127 TPR repeat-containing 95.2 2.6 5.7E-05 39.2 18.8 179 11-195 474-658 (1238)
218 COG4700 Uncharacterized protei 95.0 0.99 2.1E-05 33.3 17.3 101 96-196 85-189 (251)
219 PF13525 YfiO: Outer membrane 94.9 1.2 2.6E-05 33.7 18.2 168 72-256 12-196 (203)
220 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.79 1.7E-05 38.7 11.6 64 64-129 74-141 (453)
221 PF04053 Coatomer_WDAD: Coatom 94.8 0.4 8.7E-06 40.9 10.2 156 5-191 271-426 (443)
222 KOG4570 Uncharacterized conser 94.8 0.48 1E-05 37.8 9.6 104 24-129 58-164 (418)
223 KOG4162 Predicted calmodulin-b 94.8 2.9 6.3E-05 37.6 22.8 68 60-128 318-385 (799)
224 PF09205 DUF1955: Domain of un 94.7 0.91 2E-05 31.4 13.9 138 77-235 14-152 (161)
225 COG4700 Uncharacterized protei 94.7 1.3 2.7E-05 32.8 17.3 153 37-193 63-219 (251)
226 PF10602 RPN7: 26S proteasome 94.6 0.8 1.7E-05 33.7 10.2 60 67-126 38-99 (177)
227 COG3629 DnrI DNA-binding trans 94.4 0.37 7.9E-06 38.1 8.3 83 29-112 152-239 (280)
228 KOG0543 FKBP-type peptidyl-pro 94.3 2.3 5E-05 35.3 12.8 121 109-231 217-354 (397)
229 PF00637 Clathrin: Region in C 94.3 0.0016 3.5E-08 46.1 -4.5 52 73-124 15-66 (143)
230 PF13281 DUF4071: Domain of un 94.3 2.6 5.7E-05 35.0 18.8 162 69-232 145-334 (374)
231 PF13762 MNE1: Mitochondrial s 94.1 1.4 3E-05 31.1 11.2 47 102-148 81-128 (145)
232 PF00637 Clathrin: Region in C 94.1 0.031 6.6E-07 39.6 1.8 83 1-90 13-95 (143)
233 KOG2280 Vacuolar assembly/sort 94.1 0.63 1.4E-05 41.4 9.7 113 62-190 681-793 (829)
234 PF13929 mRNA_stabil: mRNA sta 94.1 2 4.3E-05 34.1 11.5 125 33-160 134-263 (292)
235 COG1729 Uncharacterized protei 94.0 1 2.2E-05 35.2 9.9 82 114-195 155-243 (262)
236 KOG0543 FKBP-type peptidyl-pro 93.9 2.1 4.7E-05 35.4 11.8 122 39-163 217-354 (397)
237 COG1729 Uncharacterized protei 93.8 1.3 2.9E-05 34.6 10.2 96 67-163 144-243 (262)
238 PF13762 MNE1: Mitochondrial s 93.8 1.6 3.6E-05 30.8 10.7 112 7-118 6-133 (145)
239 COG3629 DnrI DNA-binding trans 93.7 0.98 2.1E-05 35.8 9.5 75 137-211 155-236 (280)
240 PF07035 Mic1: Colon cancer-as 93.6 2 4.4E-05 31.2 14.5 127 14-154 13-139 (167)
241 KOG2114 Vacuolar assembly/sort 93.4 6.2 0.00013 36.1 16.1 175 2-194 341-517 (933)
242 PF13512 TPR_18: Tetratricopep 93.3 1.7 3.7E-05 30.6 9.2 25 70-94 52-76 (142)
243 KOG0624 dsRNA-activated protei 93.3 3.9 8.4E-05 33.4 22.6 190 5-203 48-257 (504)
244 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 1.1 2.5E-05 29.0 7.4 47 46-92 23-69 (103)
245 PF07079 DUF1347: Protein of u 93.2 4.1 9E-05 34.5 12.4 132 77-213 18-178 (549)
246 KOG4570 Uncharacterized conser 93.1 0.69 1.5E-05 37.0 7.7 99 132-232 61-164 (418)
247 PF02284 COX5A: Cytochrome c o 93.1 1.1 2.4E-05 29.3 7.3 46 48-93 28-73 (108)
248 PF13929 mRNA_stabil: mRNA sta 93.1 3.7 8E-05 32.6 12.6 134 117-251 145-291 (292)
249 KOG2280 Vacuolar assembly/sort 93.1 1.7 3.7E-05 38.9 10.6 117 25-160 679-795 (829)
250 PF13176 TPR_7: Tetratricopept 93.0 0.28 6E-06 25.3 3.9 23 68-90 2-24 (36)
251 KOG1538 Uncharacterized conser 93.0 6.4 0.00014 35.1 15.0 119 70-197 708-847 (1081)
252 KOG1920 IkappaB kinase complex 92.9 7.1 0.00015 37.2 14.7 171 7-192 863-1051(1265)
253 KOG4555 TPR repeat-containing 92.9 2.2 4.7E-05 29.6 11.0 87 39-126 52-141 (175)
254 COG4649 Uncharacterized protei 92.8 2.8 6.1E-05 30.6 13.0 123 41-163 69-195 (221)
255 PF13176 TPR_7: Tetratricopept 92.8 0.3 6.4E-06 25.2 3.8 26 32-57 1-26 (36)
256 PF09613 HrpB1_HrpK: Bacterial 92.7 2.8 6E-05 30.2 11.8 52 41-94 21-73 (160)
257 PF10602 RPN7: 26S proteasome 92.6 3.1 6.8E-05 30.6 11.9 72 23-94 28-102 (177)
258 PF13281 DUF4071: Domain of un 92.6 5.3 0.00012 33.2 20.1 161 34-196 145-334 (374)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 92.6 1.2 2.6E-05 28.8 6.9 63 10-73 22-84 (103)
260 PF08631 SPO22: Meiosis protei 92.3 4.8 0.0001 32.1 24.5 211 41-252 4-253 (278)
261 PF09613 HrpB1_HrpK: Bacterial 91.9 3.5 7.7E-05 29.6 11.2 110 3-120 18-129 (160)
262 KOG2041 WD40 repeat protein [G 91.8 9.7 0.00021 34.3 14.0 182 27-229 689-904 (1189)
263 PF02284 COX5A: Cytochrome c o 91.3 2.9 6.2E-05 27.5 8.4 76 68-144 11-88 (108)
264 PF00515 TPR_1: Tetratricopept 91.3 0.66 1.4E-05 23.2 4.1 27 32-58 3-29 (34)
265 KOG2610 Uncharacterized conser 91.2 7.1 0.00015 31.8 12.8 147 43-192 116-272 (491)
266 PRK15331 chaperone protein Sic 91.1 4.5 9.8E-05 29.2 12.5 94 71-166 43-136 (165)
267 KOG2041 WD40 repeat protein [G 90.9 12 0.00026 33.8 19.6 169 8-196 747-952 (1189)
268 PF13428 TPR_14: Tetratricopep 90.8 1.4 3.1E-05 23.7 5.3 25 69-93 5-29 (44)
269 KOG4555 TPR repeat-containing 90.5 4.4 9.5E-05 28.2 11.1 91 74-166 52-146 (175)
270 PF13428 TPR_14: Tetratricopep 90.5 1.4 3E-05 23.8 5.1 28 169-196 3-30 (44)
271 KOG1130 Predicted G-alpha GTPa 90.2 2.8 6.1E-05 35.0 8.4 126 103-229 198-341 (639)
272 PF14669 Asp_Glu_race_2: Putat 90.0 6.4 0.00014 29.3 10.8 168 24-191 2-205 (233)
273 COG4235 Cytochrome c biogenesi 89.5 9.4 0.0002 30.4 14.8 108 134-246 155-268 (287)
274 COG3118 Thioredoxin domain-con 89.5 9.5 0.00021 30.5 14.6 50 7-57 146-195 (304)
275 COG0457 NrfG FOG: TPR repeat [ 89.4 7.1 0.00015 28.9 21.6 220 9-232 37-265 (291)
276 PF13374 TPR_10: Tetratricopep 89.3 1.1 2.4E-05 23.4 4.1 26 32-57 4-29 (42)
277 KOG0276 Vesicle coat complex C 89.2 7.2 0.00016 34.4 10.4 100 41-161 648-747 (794)
278 PF11207 DUF2989: Protein of u 89.1 5.3 0.00011 30.0 8.5 83 72-156 114-199 (203)
279 PF13374 TPR_10: Tetratricopep 88.9 1.2 2.6E-05 23.3 4.1 27 66-92 3-29 (42)
280 KOG1585 Protein required for f 88.8 9.6 0.00021 29.7 15.6 87 138-226 153-250 (308)
281 PF11848 DUF3368: Domain of un 88.6 2.1 4.5E-05 23.8 4.9 41 204-246 5-45 (48)
282 PF04184 ST7: ST7 protein; In 88.6 15 0.00033 31.7 13.2 73 70-142 264-338 (539)
283 PF11207 DUF2989: Protein of u 88.5 6.5 0.00014 29.5 8.7 79 40-120 117-198 (203)
284 PF07719 TPR_2: Tetratricopept 88.4 1.5 3.3E-05 21.7 4.1 26 33-58 4-29 (34)
285 PF13934 ELYS: Nuclear pore co 88.1 10 0.00022 29.2 10.7 70 106-178 114-183 (226)
286 PF07163 Pex26: Pex26 protein; 87.8 8.8 0.00019 30.4 9.3 87 35-123 88-181 (309)
287 PF13431 TPR_17: Tetratricopep 87.7 1.1 2.4E-05 22.7 3.1 22 29-50 12-33 (34)
288 COG0457 NrfG FOG: TPR repeat [ 87.5 9.6 0.00021 28.2 25.1 187 43-232 36-231 (291)
289 PF02259 FAT: FAT domain; Int 87.3 15 0.00032 30.1 16.5 187 3-195 6-212 (352)
290 COG4455 ImpE Protein of avirul 87.0 8.1 0.00018 29.5 8.3 55 34-90 5-60 (273)
291 COG4455 ImpE Protein of avirul 86.1 7.7 0.00017 29.6 7.8 58 103-161 4-61 (273)
292 PHA02875 ankyrin repeat protei 86.1 14 0.00029 31.4 10.7 210 4-238 8-230 (413)
293 KOG1585 Protein required for f 86.0 15 0.00031 28.7 17.5 205 32-259 33-249 (308)
294 PF04184 ST7: ST7 protein; In 85.7 23 0.00049 30.7 12.8 59 105-163 264-323 (539)
295 PF13181 TPR_8: Tetratricopept 85.6 2 4.4E-05 21.3 3.5 27 32-58 3-29 (34)
296 PF11838 ERAP1_C: ERAP1-like C 85.4 18 0.0004 29.3 18.5 143 106-250 135-287 (324)
297 cd00280 TRFH Telomeric Repeat 85.3 8.9 0.00019 28.3 7.7 65 11-78 85-156 (200)
298 PRK10564 maltose regulon perip 85.3 2.5 5.5E-05 33.7 5.3 44 61-104 252-296 (303)
299 COG5159 RPN6 26S proteasome re 84.0 20 0.00044 28.7 11.4 20 172-191 130-149 (421)
300 TIGR02561 HrpB1_HrpK type III 84.0 13 0.00028 26.5 10.4 19 111-129 55-73 (153)
301 PF14689 SPOB_a: Sensor_kinase 83.9 4.9 0.00011 23.7 5.0 47 10-58 5-51 (62)
302 TIGR03504 FimV_Cterm FimV C-te 83.8 4.1 8.9E-05 22.2 4.3 22 107-128 6-27 (44)
303 PF00515 TPR_1: Tetratricopept 83.8 3.7 8E-05 20.3 4.0 27 67-93 3-29 (34)
304 PF13512 TPR_18: Tetratricopep 83.6 13 0.00029 26.2 12.6 76 75-150 20-97 (142)
305 KOG1920 IkappaB kinase complex 83.5 45 0.00097 32.3 21.4 116 97-230 932-1053(1265)
306 PF07163 Pex26: Pex26 protein; 83.3 21 0.00046 28.4 9.5 92 68-159 86-182 (309)
307 COG4649 Uncharacterized protei 83.2 16 0.00034 26.9 14.0 131 65-196 59-196 (221)
308 PF02259 FAT: FAT domain; Int 83.2 24 0.00052 28.9 15.6 189 36-231 4-212 (352)
309 PF10579 Rapsyn_N: Rapsyn N-te 82.5 5.5 0.00012 24.8 4.9 46 42-87 18-65 (80)
310 cd00280 TRFH Telomeric Repeat 82.1 13 0.00028 27.5 7.4 22 174-195 118-139 (200)
311 COG5108 RPO41 Mitochondrial DN 81.9 9.5 0.00021 34.1 7.8 75 1-78 34-116 (1117)
312 COG3898 Uncharacterized membra 81.9 30 0.00064 29.1 22.2 91 7-100 132-224 (531)
313 PHA02875 ankyrin repeat protei 81.7 26 0.00057 29.6 10.6 210 38-266 7-228 (413)
314 TIGR02561 HrpB1_HrpK type III 81.2 17 0.00037 25.9 10.3 50 42-95 22-74 (153)
315 PF11848 DUF3368: Domain of un 80.6 7.7 0.00017 21.5 4.9 24 81-104 18-41 (48)
316 KOG2610 Uncharacterized conser 80.6 31 0.00066 28.4 17.6 149 8-160 116-272 (491)
317 PF07721 TPR_4: Tetratricopept 80.5 3.1 6.7E-05 19.4 2.7 18 36-53 7-24 (26)
318 KOG4077 Cytochrome c oxidase, 80.4 16 0.00036 25.1 7.1 60 84-144 68-127 (149)
319 COG0735 Fur Fe2+/Zn2+ uptake r 80.1 11 0.00024 26.7 6.6 63 86-149 7-69 (145)
320 COG5108 RPO41 Mitochondrial DN 79.5 44 0.00095 30.3 10.9 47 70-116 33-81 (1117)
321 PRK10564 maltose regulon perip 79.2 4.3 9.3E-05 32.4 4.6 47 26-72 252-299 (303)
322 KOG2659 LisH motif-containing 78.8 27 0.00059 26.8 9.1 64 27-92 23-91 (228)
323 PRK14700 recombination factor 78.7 33 0.00072 27.7 9.3 87 26-114 63-175 (300)
324 TIGR03504 FimV_Cterm FimV C-te 78.7 5.9 0.00013 21.5 3.7 24 71-94 5-28 (44)
325 COG4105 ComL DNA uptake lipopr 78.5 30 0.00065 27.1 20.6 184 31-231 36-232 (254)
326 TIGR02508 type_III_yscG type I 78.3 17 0.00036 24.0 7.8 50 40-95 49-98 (115)
327 TIGR02508 type_III_yscG type I 77.6 18 0.00038 23.9 7.2 52 175-233 47-98 (115)
328 PF11663 Toxin_YhaV: Toxin wit 77.3 3 6.4E-05 28.9 2.8 31 78-110 108-138 (140)
329 KOG1130 Predicted G-alpha GTPa 77.1 29 0.00063 29.4 8.8 127 69-195 199-343 (639)
330 PRK11906 transcriptional regul 76.9 48 0.001 28.6 11.8 115 44-162 318-434 (458)
331 KOG1586 Protein required for f 76.3 34 0.00074 26.6 13.4 16 41-56 25-40 (288)
332 PF08631 SPO22: Meiosis protei 76.2 38 0.00082 27.0 25.7 220 5-228 3-271 (278)
333 PF10579 Rapsyn_N: Rapsyn N-te 75.5 13 0.00029 23.2 5.0 46 77-122 18-65 (80)
334 PF03745 DUF309: Domain of unk 74.4 15 0.00033 21.6 5.4 48 41-88 10-62 (62)
335 PF08311 Mad3_BUB1_I: Mad3/BUB 73.6 27 0.00058 24.1 9.0 44 185-228 81-124 (126)
336 KOG2063 Vacuolar assembly/sort 73.5 83 0.0018 29.7 16.0 116 32-147 506-638 (877)
337 PRK11906 transcriptional regul 73.2 60 0.0013 28.0 16.9 143 47-192 275-432 (458)
338 KOG4567 GTPase-activating prot 72.5 31 0.00067 27.9 7.6 69 121-191 264-342 (370)
339 PF04097 Nic96: Nup93/Nic96; 72.3 76 0.0017 28.8 13.9 35 40-76 268-302 (613)
340 COG3947 Response regulator con 72.0 51 0.0011 26.6 16.3 157 82-242 150-357 (361)
341 PF13174 TPR_6: Tetratricopept 71.9 7.3 0.00016 18.8 3.0 17 110-126 10-26 (33)
342 cd08819 CARD_MDA5_2 Caspase ac 71.9 23 0.0005 22.6 7.0 62 85-152 22-83 (88)
343 COG0735 Fur Fe2+/Zn2+ uptake r 71.7 28 0.0006 24.7 6.8 62 52-114 8-69 (145)
344 KOG4648 Uncharacterized conser 71.3 21 0.00046 29.3 6.6 44 40-85 107-151 (536)
345 PF12796 Ank_2: Ankyrin repeat 71.2 15 0.00033 23.0 5.1 81 4-99 3-86 (89)
346 PF11846 DUF3366: Domain of un 70.9 32 0.00069 25.6 7.4 61 69-129 112-173 (193)
347 KOG1550 Extracellular protein 70.1 81 0.0018 28.2 18.6 181 10-197 227-427 (552)
348 PF11663 Toxin_YhaV: Toxin wit 69.9 3.7 8.1E-05 28.5 1.9 24 152-175 112-136 (140)
349 PRK11639 zinc uptake transcrip 69.5 32 0.0007 25.1 6.9 30 83-112 43-72 (169)
350 PF11846 DUF3366: Domain of un 68.9 36 0.00078 25.3 7.3 64 103-166 111-175 (193)
351 COG4105 ComL DNA uptake lipopr 68.7 55 0.0012 25.7 20.8 174 5-195 44-232 (254)
352 PF09670 Cas_Cas02710: CRISPR- 67.8 74 0.0016 26.8 12.4 55 74-129 140-198 (379)
353 PRK13342 recombination factor 67.5 78 0.0017 27.0 16.4 44 12-57 154-201 (413)
354 COG5159 RPN6 26S proteasome re 67.1 65 0.0014 25.9 9.9 125 3-127 11-152 (421)
355 PF06552 TOM20_plant: Plant sp 67.0 50 0.0011 24.5 8.1 110 11-129 7-136 (186)
356 KOG0276 Vesicle coat complex C 66.9 97 0.0021 27.9 12.2 132 31-192 615-746 (794)
357 smart00028 TPR Tetratricopepti 66.9 11 0.00025 17.1 3.4 25 33-57 4-28 (34)
358 PF14689 SPOB_a: Sensor_kinase 66.7 23 0.00049 20.9 4.6 23 70-92 28-50 (62)
359 KOG4077 Cytochrome c oxidase, 66.6 40 0.00087 23.3 9.1 45 49-93 68-112 (149)
360 KOG4567 GTPase-activating prot 65.7 48 0.001 26.9 7.4 71 50-125 263-343 (370)
361 PF09454 Vps23_core: Vps23 cor 65.6 22 0.00047 21.3 4.4 33 63-95 6-38 (65)
362 KOG2297 Predicted translation 65.2 74 0.0016 25.9 13.3 13 28-40 109-121 (412)
363 KOG4648 Uncharacterized conser 65.1 28 0.0006 28.7 6.1 44 5-50 107-151 (536)
364 KOG1550 Extracellular protein 65.1 1E+02 0.0022 27.5 19.9 150 5-161 259-423 (552)
365 PF02847 MA3: MA3 domain; Int 64.3 39 0.00085 22.4 6.4 17 5-21 12-28 (113)
366 PF10366 Vps39_1: Vacuolar sor 63.9 41 0.00089 22.5 7.4 26 103-128 42-67 (108)
367 PRK09462 fur ferric uptake reg 63.8 49 0.0011 23.4 6.8 35 116-150 33-67 (148)
368 KOG0550 Molecular chaperone (D 63.4 95 0.0021 26.5 16.1 150 6-161 180-347 (486)
369 cd08819 CARD_MDA5_2 Caspase ac 62.2 39 0.00084 21.6 7.2 33 149-183 50-82 (88)
370 KOG1464 COP9 signalosome, subu 61.6 82 0.0018 25.2 14.1 48 45-92 42-92 (440)
371 PF04097 Nic96: Nup93/Nic96; 61.5 1.3E+02 0.0028 27.4 15.9 58 1-59 117-181 (613)
372 KOG1464 COP9 signalosome, subu 61.5 83 0.0018 25.2 19.2 153 8-160 40-216 (440)
373 PF07575 Nucleopor_Nup85: Nup8 61.5 28 0.00061 31.1 6.3 115 133-247 403-539 (566)
374 PRK11639 zinc uptake transcrip 61.4 60 0.0013 23.7 7.0 63 19-82 15-77 (169)
375 PRK09687 putative lyase; Provi 61.3 84 0.0018 25.2 24.6 30 153-182 192-221 (280)
376 PF11838 ERAP1_C: ERAP1-like C 60.9 88 0.0019 25.3 19.5 146 81-230 146-306 (324)
377 PRK02492 deoxyhypusine synthas 60.4 12 0.00025 30.9 3.4 62 202-266 23-88 (347)
378 KOG1941 Acetylcholine receptor 60.2 1E+02 0.0022 25.8 13.9 221 7-228 18-271 (518)
379 PF10345 Cohesin_load: Cohesin 60.0 1.4E+02 0.0029 27.2 15.8 154 7-161 72-251 (608)
380 PF10475 DUF2450: Protein of u 59.7 92 0.002 25.1 11.9 52 36-93 104-155 (291)
381 COG3898 Uncharacterized membra 59.5 1.1E+02 0.0024 26.0 18.0 33 172-206 268-300 (531)
382 PF07079 DUF1347: Protein of u 59.3 1.2E+02 0.0026 26.3 21.9 140 5-148 16-180 (549)
383 PRK09857 putative transposase; 58.6 94 0.002 25.1 8.2 66 68-134 209-274 (292)
384 KOG4234 TPR repeat-containing 57.7 83 0.0018 24.0 8.7 18 41-58 106-123 (271)
385 TIGR03581 EF_0839 conserved hy 57.7 53 0.0011 25.1 6.1 82 46-127 137-235 (236)
386 PF09454 Vps23_core: Vps23 cor 57.5 23 0.00049 21.2 3.5 52 26-78 4-55 (65)
387 COG3118 Thioredoxin domain-con 57.4 1E+02 0.0022 24.9 16.7 140 108-252 142-286 (304)
388 PF12926 MOZART2: Mitotic-spin 57.4 48 0.001 21.1 7.6 41 51-91 29-69 (88)
389 PF09797 NatB_MDM20: N-acetylt 57.0 1.2E+02 0.0025 25.4 10.5 69 69-138 184-255 (365)
390 COG1747 Uncharacterized N-term 56.3 1.4E+02 0.0031 26.3 20.1 63 63-128 64-126 (711)
391 KOG0991 Replication factor C, 56.1 97 0.0021 24.3 9.5 116 105-244 164-279 (333)
392 PF10366 Vps39_1: Vacuolar sor 55.4 60 0.0013 21.7 7.5 27 67-93 41-67 (108)
393 PF10345 Cohesin_load: Cohesin 55.4 1.6E+02 0.0035 26.7 21.4 123 4-127 109-252 (608)
394 PRK15180 Vi polysaccharide bio 55.3 1.5E+02 0.0031 26.0 10.7 115 112-230 301-418 (831)
395 PF11817 Foie-gras_1: Foie gra 55.0 1E+02 0.0022 24.1 8.1 56 105-160 183-243 (247)
396 cd07153 Fur_like Ferric uptake 54.8 35 0.00076 22.8 4.7 31 118-148 18-48 (116)
397 PF13934 ELYS: Nuclear pore co 53.9 1E+02 0.0022 23.8 16.2 102 103-213 79-183 (226)
398 COG4003 Uncharacterized protei 52.9 26 0.00056 21.9 3.2 30 204-233 32-61 (98)
399 PRK09462 fur ferric uptake reg 52.2 82 0.0018 22.3 6.8 62 54-116 6-68 (148)
400 PF12926 MOZART2: Mitotic-spin 51.7 61 0.0013 20.7 8.1 44 86-129 29-72 (88)
401 KOG0890 Protein kinase of the 51.7 3.3E+02 0.0073 29.2 13.9 143 6-157 1394-1540(2382)
402 PRK08691 DNA polymerase III su 51.6 2E+02 0.0044 26.6 11.0 33 101-134 247-279 (709)
403 KOG2063 Vacuolar assembly/sort 51.3 2.3E+02 0.0049 27.1 16.0 112 1-112 510-638 (877)
404 KOG2422 Uncharacterized conser 51.2 1.8E+02 0.004 26.0 12.9 141 36-181 348-497 (665)
405 PF11817 Foie-gras_1: Foie gra 51.0 1.2E+02 0.0026 23.7 7.8 58 70-127 183-245 (247)
406 PRK00805 putative deoxyhypusin 50.7 21 0.00045 29.3 3.4 59 204-265 13-75 (329)
407 COG0819 TenA Putative transcri 50.2 1.2E+02 0.0025 23.4 9.1 25 24-48 103-127 (218)
408 KOG0275 Conserved WD40 repeat- 50.1 1.4E+02 0.0031 24.4 8.6 47 113-160 53-99 (508)
409 PF02607 B12-binding_2: B12 bi 50.1 56 0.0012 19.9 4.7 36 217-252 15-50 (79)
410 PF01475 FUR: Ferric uptake re 49.7 32 0.00069 23.3 3.8 32 116-147 23-54 (120)
411 PRK15180 Vi polysaccharide bio 49.3 1.8E+02 0.004 25.5 9.6 115 43-161 302-417 (831)
412 cd07153 Fur_like Ferric uptake 49.0 46 0.00099 22.2 4.5 21 47-67 17-37 (116)
413 PF10155 DUF2363: Uncharacteri 48.5 89 0.0019 21.6 10.8 112 9-126 3-124 (126)
414 COG1747 Uncharacterized N-term 48.4 2E+02 0.0043 25.5 20.0 175 29-211 65-248 (711)
415 PF04762 IKI3: IKI3 family; I 48.0 2.7E+02 0.0058 27.0 15.5 27 103-129 815-843 (928)
416 PF06552 TOM20_plant: Plant sp 47.6 1.2E+02 0.0025 22.7 8.1 78 10-97 50-139 (186)
417 COG3947 Response regulator con 46.9 1.6E+02 0.0034 24.0 15.7 176 29-206 121-357 (361)
418 KOG3636 Uncharacterized conser 46.6 1.9E+02 0.0042 24.9 12.8 163 13-178 73-271 (669)
419 PF12862 Apc5: Anaphase-promot 46.1 78 0.0017 20.3 6.3 19 74-92 50-68 (94)
420 PF01475 FUR: Ferric uptake re 45.7 35 0.00075 23.1 3.5 29 39-67 16-44 (120)
421 PF07575 Nucleopor_Nup85: Nup8 45.4 62 0.0013 29.0 5.8 57 68-126 408-464 (566)
422 PF08870 DUF1832: Domain of un 45.2 95 0.0021 21.0 5.9 29 12-40 6-36 (113)
423 PF14853 Fis1_TPR_C: Fis1 C-te 44.8 59 0.0013 18.5 4.1 19 40-58 11-29 (53)
424 TIGR00321 dhys deoxyhypusine s 44.1 22 0.00047 28.8 2.5 59 204-265 12-74 (301)
425 PF08542 Rep_fac_C: Replicatio 44.1 40 0.00086 21.2 3.4 30 169-199 7-36 (89)
426 smart00777 Mad3_BUB1_I Mad3/BU 44.1 1.1E+02 0.0023 21.2 8.1 44 184-227 80-123 (125)
427 cd08315 Death_TRAILR_DR4_DR5 D 44.0 89 0.0019 20.3 5.5 47 151-197 47-94 (96)
428 PF04762 IKI3: IKI3 family; I 43.7 1.5E+02 0.0033 28.6 8.2 33 62-94 808-843 (928)
429 COG5210 GTPase-activating prot 43.7 2.3E+02 0.005 25.0 12.2 45 121-165 363-407 (496)
430 COG2256 MGS1 ATPase related to 42.8 2.2E+02 0.0047 24.4 14.2 48 67-114 248-298 (436)
431 PRK03971 putative deoxyhypusin 42.7 21 0.00047 29.2 2.3 27 169-195 30-60 (334)
432 smart00386 HAT HAT (Half-A-TPR 42.4 39 0.00085 15.8 3.9 27 9-36 1-27 (33)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 42.3 1.1E+02 0.0024 21.0 8.5 43 83-125 81-124 (126)
434 KOG1941 Acetylcholine receptor 42.3 2.1E+02 0.0046 24.1 15.7 123 70-192 127-271 (518)
435 COG2976 Uncharacterized protei 42.3 1.5E+02 0.0033 22.4 14.1 89 108-196 97-188 (207)
436 COG0819 TenA Putative transcri 42.0 1.6E+02 0.0035 22.7 8.4 29 91-119 100-128 (218)
437 PF14744 WASH-7_mid: WASH comp 41.6 80 0.0017 26.1 5.3 47 183-232 282-328 (350)
438 PF04124 Dor1: Dor1-like famil 41.3 2.1E+02 0.0044 23.7 8.0 40 32-71 108-148 (338)
439 PF12862 Apc5: Anaphase-promot 40.9 97 0.0021 19.8 6.4 54 5-58 8-69 (94)
440 PF02841 GBP_C: Guanylate-bind 40.9 1.5E+02 0.0032 24.0 6.9 66 124-192 19-87 (297)
441 COG4003 Uncharacterized protei 40.6 93 0.002 19.6 4.7 34 172-206 36-69 (98)
442 PF06957 COPI_C: Coatomer (COP 40.2 2.4E+02 0.0053 24.3 9.2 31 102-132 302-332 (422)
443 PF14162 YozD: YozD-like prote 40.0 69 0.0015 18.0 4.0 19 220-238 12-30 (57)
444 PRK12928 lipoyl synthase; Prov 39.9 64 0.0014 26.0 4.6 58 69-130 175-232 (290)
445 PF02847 MA3: MA3 domain; Int 39.9 1.1E+02 0.0024 20.2 9.8 60 139-198 6-68 (113)
446 PF07443 HARP: HepA-related pr 39.7 15 0.00033 21.1 0.8 33 44-76 6-38 (55)
447 PRK12357 glutaminase; Reviewed 39.6 2.2E+02 0.0047 23.5 8.9 13 60-72 97-109 (326)
448 PF04124 Dor1: Dor1-like famil 38.8 1.7E+02 0.0038 24.1 7.1 24 104-127 110-133 (338)
449 KOG2066 Vacuolar assembly/sort 38.5 3.4E+02 0.0073 25.4 13.8 147 39-195 365-533 (846)
450 PF00531 Death: Death domain; 38.2 58 0.0013 20.0 3.5 40 220-261 41-80 (83)
451 COG2405 Predicted nucleic acid 37.8 88 0.0019 22.1 4.3 43 203-247 111-153 (157)
452 PRK02301 putative deoxyhypusin 37.5 38 0.00082 27.6 3.0 47 216-265 39-86 (316)
453 smart00544 MA3 Domain in DAP-5 37.5 1.2E+02 0.0026 20.0 8.9 19 4-22 11-29 (113)
454 COG2909 MalT ATP-dependent tra 37.5 3.7E+02 0.008 25.6 16.3 202 4-205 424-656 (894)
455 TIGR02147 Fsuc_second hypothet 37.3 2E+02 0.0043 23.0 6.9 36 93-128 66-101 (271)
456 cd00245 Glm_e Coenzyme B12-dep 37.3 86 0.0019 26.9 5.1 54 183-238 149-202 (428)
457 COG2987 HutU Urocanate hydrata 37.0 45 0.00097 28.5 3.3 59 8-79 216-278 (561)
458 PRK14958 DNA polymerase III su 36.8 3E+02 0.0066 24.4 12.0 77 21-100 191-280 (509)
459 COG0001 HemL Glutamate-1-semia 36.6 29 0.00063 29.6 2.3 68 7-74 183-272 (432)
460 PRK13713 conjugal transfer pro 36.4 1.4E+02 0.003 20.3 5.5 64 183-252 6-71 (118)
461 cd08789 CARD_IPS-1_RIG-I Caspa 36.1 1.1E+02 0.0025 19.3 5.8 33 148-182 45-77 (84)
462 PRK09857 putative transposase; 35.9 2.4E+02 0.0051 22.9 9.0 66 103-169 209-274 (292)
463 cd08812 CARD_RIG-I_like Caspas 35.5 1.2E+02 0.0026 19.3 6.9 34 149-182 48-81 (88)
464 TIGR03581 EF_0839 conserved hy 35.4 2.1E+02 0.0045 22.1 6.2 79 151-230 137-235 (236)
465 COG2178 Predicted RNA-binding 35.3 2E+02 0.0043 21.8 11.2 18 178-195 132-149 (204)
466 PHA03095 ankyrin-like protein; 35.3 2.9E+02 0.0063 23.8 9.9 79 18-100 30-112 (471)
467 KOG0890 Protein kinase of the 35.2 6.1E+02 0.013 27.5 11.0 102 105-211 1388-1492(2382)
468 PHA03100 ankyrin repeat protei 35.0 3E+02 0.0065 23.8 12.3 196 15-227 86-304 (480)
469 PRK14136 recX recombination re 34.9 2.5E+02 0.0055 22.9 14.3 108 27-160 159-266 (309)
470 KOG1166 Mitotic checkpoint ser 34.8 4.4E+02 0.0096 25.7 9.9 75 178-252 89-163 (974)
471 PF02184 HAT: HAT (Half-A-TPR) 34.4 67 0.0014 16.1 2.6 21 11-33 3-23 (32)
472 PF00244 14-3-3: 14-3-3 protei 34.3 2.2E+02 0.0048 22.1 9.1 55 3-57 9-64 (236)
473 KOG2214 Predicted esterase of 34.0 2.8E+02 0.0061 24.5 7.5 146 87-241 192-353 (543)
474 KOG3807 Predicted membrane pro 33.8 2.8E+02 0.006 23.1 9.5 51 147-197 287-341 (556)
475 PRK14951 DNA polymerase III su 33.7 3.8E+02 0.0082 24.6 12.3 20 114-133 264-283 (618)
476 KOG2659 LisH motif-containing 33.5 2.3E+02 0.005 22.0 9.2 100 61-162 22-130 (228)
477 KOG2223 Uncharacterized conser 33.5 3.2E+02 0.0069 23.6 9.6 50 122-171 461-510 (586)
478 PF14840 DNA_pol3_delt_C: Proc 33.3 54 0.0012 22.6 2.9 26 8-33 10-35 (125)
479 TIGR01228 hutU urocanate hydra 33.2 60 0.0013 28.2 3.5 64 8-84 207-275 (545)
480 KOG0687 26S proteasome regulat 33.0 2.9E+02 0.0062 23.0 16.2 115 135-252 104-230 (393)
481 PRK08691 DNA polymerase III su 32.6 4.2E+02 0.009 24.7 12.4 72 93-167 193-277 (709)
482 PRK06645 DNA polymerase III su 32.6 3.6E+02 0.0078 24.0 11.6 32 93-126 202-233 (507)
483 smart00164 TBC Domain in Tre-2 32.5 1.6E+02 0.0035 21.7 5.7 44 121-164 152-196 (199)
484 PF11251 DUF3050: Protein of u 32.4 2.4E+02 0.0052 21.9 13.2 135 84-229 82-221 (232)
485 PF09670 Cas_Cas02710: CRISPR- 32.4 3.1E+02 0.0067 23.2 10.8 55 39-94 140-198 (379)
486 cd00245 Glm_e Coenzyme B12-dep 32.4 2.5E+02 0.0053 24.3 7.0 108 9-123 25-149 (428)
487 COG2987 HutU Urocanate hydrata 32.4 1.8E+02 0.0039 25.2 6.0 68 148-225 216-287 (561)
488 cd08780 Death_TRADD Death Doma 32.4 1.4E+02 0.003 19.2 5.3 45 144-188 41-86 (90)
489 PRK05414 urocanate hydratase; 32.1 63 0.0014 28.2 3.5 59 8-79 216-278 (556)
490 PRK14958 DNA polymerase III su 32.0 3.7E+02 0.0079 23.9 12.5 32 169-201 248-279 (509)
491 COG1899 DYS1 Deoxyhypusine syn 32.0 20 0.00044 28.9 0.6 46 216-265 37-83 (318)
492 KOG3807 Predicted membrane pro 32.0 3E+02 0.0065 22.9 10.3 66 98-163 271-339 (556)
493 PF13877 RPAP3_C: Potential Mo 31.8 1.4E+02 0.0031 19.1 6.6 9 215-223 77-85 (94)
494 COG2405 Predicted nucleic acid 31.3 1E+02 0.0022 21.8 3.8 51 58-110 104-154 (157)
495 PRK14963 DNA polymerase III su 31.1 3.8E+02 0.0082 23.8 12.1 32 169-201 244-275 (504)
496 PF11768 DUF3312: Protein of u 31.0 3.9E+02 0.0084 23.9 9.4 42 140-181 413-458 (545)
497 PF11768 DUF3312: Protein of u 30.9 3.9E+02 0.0085 23.9 10.0 58 34-92 412-471 (545)
498 PRK14951 DNA polymerase III su 30.8 4.2E+02 0.0092 24.3 12.4 85 13-100 187-285 (618)
499 COG2976 Uncharacterized protei 30.8 2.4E+02 0.0052 21.4 14.6 129 100-233 54-189 (207)
500 PF11123 DNA_Packaging_2: DNA 30.7 1.3E+02 0.0029 18.5 4.7 36 7-43 9-44 (82)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-49 Score=355.24 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
|.+|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHH--cCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHH
Q 023915 82 ILAYRTMVDMHR--KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 82 ~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
+.|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 444444444432 233444444444444444444444444444444443433333334444444444333333333333
Q ss_pred Hh
Q 023915 160 DN 161 (275)
Q Consensus 160 ~~ 161 (275)
+|
T Consensus 639 eM 640 (1060)
T PLN03218 639 DM 640 (1060)
T ss_pred HH
Confidence 33
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-49 Score=354.69 Aligned_cols=267 Identities=16% Similarity=0.168 Sum_probs=253.7
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh--cCCCCChhhHHHHHHHHHcc
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE--LAISPDYNTFHILIKYFCKE 78 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~ 78 (275)
||.+|++.|++++|.++|++|...|+.||..+||+||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 5889999999999999999999999999999999999999999999999999999986 68999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.|+..+|+.+|.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCC
Q 023915 159 KDNSESI---SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 159 ~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~ 235 (275)
++|.+.+ +..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|+ +.|++++|.++|++|...|+.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~-k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCC
Confidence 9998854 445899999999999999999999999999999999999999999998 789999999999999999999
Q ss_pred CChhhHHHHHHHHHHhh-----HHHHHHHHhccCCCCC
Q 023915 236 VDSSTRNLILKNSHLFG-----RQLIADILSKQHMKSK 268 (275)
Q Consensus 236 p~~~t~~~li~~~~~~g-----~~~~~~~~~~~~~~~~ 268 (275)
||..||+++|.+|++.| ...+.++...++.|+.
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999998 5556666666776654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=324.52 Aligned_cols=258 Identities=11% Similarity=0.075 Sum_probs=237.8
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcH-----------------------------------HhHHHHHHHHHccCC
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDV-----------------------------------VLLNSMLCAYCRTGD 45 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----------------------------------~~~~~li~~~~~~g~ 45 (275)
||.+|++.|++++|.++|++|.+.|+.||. .+||+||++|++.|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 578999999999999999999877666554 455778889999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHH
Q 023915 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (275)
+++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..
T Consensus 275 ~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 275 IEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999965 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 126 LRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 126 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
|.+.|..|+..+|+++|++|++.|++++|.++|++|.+ ++..+||+||.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999875 56679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHhhHHHHHHHHhccC
Q 023915 206 HIAIARYIAEREKKELLLKLLEWMTG-QGYVVDSSTRNLILKNSHLFGRQLIADILSKQH 264 (275)
Q Consensus 206 ~~li~~~~~~~~~~~~a~~l~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~ 264 (275)
+++|.+|+ +.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|+...|..+.+++
T Consensus 430 ~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 430 LAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 99999986 88999999999999976 699999999999999999999877777776665
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-43 Score=315.47 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=238.5
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhH-----------------------------------HHHHHHHHccCC
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLL-----------------------------------NSMLCAYCRTGD 45 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-----------------------------------~~li~~~~~~g~ 45 (275)
||.+|++.|++++|+++|++|...|+.||..|| |+||.+|++.|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 578999999999999999999988888877666 556666777788
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHH
Q 023915 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (275)
+++|.++|++|.+ ||..+||++|.+|++.|++++|+++|.+|.+.|+.||..||+.+|.+|++.|+.+.|.+++..
T Consensus 238 ~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 8888888888864 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 126 LRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 126 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
|...|..|+..+|+++|.+|++.|++++|.++|++|.. ++..+|+++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 99999999999999999999999999999999999875 56679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhccCCC
Q 023915 206 HIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSKQHMK 266 (275)
Q Consensus 206 ~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~~~ 266 (275)
+.++.+|+ +.|++++|.++++.|.+.|+.|+..+|++||++|++.|+...|..+.+.|..
T Consensus 393 ~~ll~a~~-~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 393 ASVLSACA-CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHh-ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999987 8899999999999999999999999999999999999988888888877643
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-42 Score=308.05 Aligned_cols=258 Identities=13% Similarity=0.093 Sum_probs=189.8
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
+.+|++.++++.|.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++
T Consensus 130 l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCH
Confidence 445555555555555555555555555555555555555555555555555555543 5555666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
++|+++|++|.+.|+.|+..||+.++.+|++.|..+.+.+++..+.+.|..++..+|+++|.+|++.|++++|.++|++|
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66666666666666666666665555555555555555555555555666667777788889999999999999999988
Q ss_pred hcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhH
Q 023915 162 SESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTR 241 (275)
Q Consensus 162 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~ 241 (275)
.. .+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|+ +.|.+++|.+++.+|.+.|+.||..+|
T Consensus 286 ~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 286 PE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS-RLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred CC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 65 4667899999999999999999999999999999999999999999987 778899999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhccCC
Q 023915 242 NLILKNSHLFGRQLIADILSKQHM 265 (275)
Q Consensus 242 ~~li~~~~~~g~~~~~~~~~~~~~ 265 (275)
++|+.+|++.|+...|..+.++|.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999999998888887777664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-42 Score=314.23 Aligned_cols=256 Identities=14% Similarity=0.129 Sum_probs=181.5
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
|.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 445555555555555555553 2455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh------------------------------ccc
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY------------------------------SKR 131 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------------------~~~ 131 (275)
+.|.++++.|.+.|+.|+..+|++||++|++.|++++|.++|++|.. .+.
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 55555555555555555555555555555555544444444443322 123
Q ss_pred cccHH-----------------------------------hHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHH
Q 023915 132 SMCKA-----------------------------------LHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASA 176 (275)
Q Consensus 132 ~~~~~-----------------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 176 (275)
.|+.. +++++|++|++.|++++|.++|+.+ .++..+||++|.+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~ 563 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTG 563 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHH
Confidence 45544 4455667777888888888888887 6677799999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh-hCCCCCChhhHHHHHHHHHHhhHHH
Q 023915 177 FVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT-GQGYVVDSSTRNLILKNSHLFGRQL 255 (275)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~-~~~~~p~~~t~~~li~~~~~~g~~~ 255 (275)
|++.|+.++|.++|++|.+.|+.||..||+.+|.+|+ +.|.+++|.++|++|. +.|+.|+..+|+.++.+|++.|+..
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999976 8899999999999998 7899999999999999999999888
Q ss_pred HHHHHhccC
Q 023915 256 IADILSKQH 264 (275)
Q Consensus 256 ~~~~~~~~~ 264 (275)
.|+.+.++|
T Consensus 643 eA~~~~~~m 651 (857)
T PLN03077 643 EAYNFINKM 651 (857)
T ss_pred HHHHHHHHC
Confidence 888888876
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.9e-18 Score=142.13 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=137.8
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHccCCHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD---YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~ 82 (275)
...|++++|...|+++.+.++. +..++..+...+.+.|++++|.++++.+...+..++ ..++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3456666677777666665322 445666666666666666666666666665432221 234556666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc----HHhHHHHHHHHHhccchHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC----KALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
.|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+...+..+. ...+..+...+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666432 33455666666666666666666666666654432221 112334445555666666666666
Q ss_pred HHhhcCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 159 KDNSESI--SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 159 ~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
+++.... ....+..+...+...|++++|.+.++++.+.+-.....+++.+..+|+ ..|++++|...++++.+. .|
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh--CC
Confidence 6654421 122444555666666666666666666555321111234555555554 446666666666665543 34
Q ss_pred ChhhHHHHHHHHHHhhHHHHHHH
Q 023915 237 DSSTRNLILKNSHLFGRQLIADI 259 (275)
Q Consensus 237 ~~~t~~~li~~~~~~g~~~~~~~ 259 (275)
+...+..+...+.+.|+...+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHH
Confidence 54555555556666554443333
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.8e-18 Score=144.17 Aligned_cols=260 Identities=12% Similarity=0.090 Sum_probs=208.5
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 78 (275)
...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+++.+. -+++..+++.++..+.+.
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHh
Confidence 3567899999999999999988654332 357899999999999999999999999875 235677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
|++++|...++.+.+.+..+.. ..+..+...+.+.|++++|...|+++...... +...+..+...+...|++++|
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999876543322 24566778889999999999999998865432 345677788999999999999
Q ss_pred HHHHHHhhcCC-C--hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 155 YVVVKDNSESI-S--HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 155 ~~~~~~~~~~~-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
.+.++++.... . ...++.+..+|...|++++|...++.+.+. .|+...+..+...+. ..|++++|..+++++.+
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~-~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLE-EQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 99999987632 2 225788899999999999999999998885 477777788888876 77999999999999877
Q ss_pred CCCCCChhhHHHHHHHHHH---hh-----HHHHHHHHhccCCCCC
Q 023915 232 QGYVVDSSTRNLILKNSHL---FG-----RQLIADILSKQHMKSK 268 (275)
Q Consensus 232 ~~~~p~~~t~~~li~~~~~---~g-----~~~~~~~~~~~~~~~~ 268 (275)
. .|+..+++.++..+.. .| ...+..++.+.+.|..
T Consensus 311 ~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 311 R--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 6999999999887764 23 2334555655555443
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=2.5e-15 Score=137.64 Aligned_cols=254 Identities=11% Similarity=0.012 Sum_probs=136.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|.+.|+.+.+.... +...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3455556666666666665544321 44455555556666666666666665555421 122344445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccc------------------------------
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS------------------------------ 132 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------ 132 (275)
.|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+......
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555555554432 223334444444444445555544444444433222
Q ss_pred --ccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHH
Q 023915 133 --MCKALHEKILHILISGKLLKDAYVVVKDNSES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID-QGIFHI 207 (275)
Q Consensus 133 --~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~ 207 (275)
.+...+..+...|...|++++|...|+++... .++..++.+...+...|+ ++|...++...+. .|+ ..++..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHH
Confidence 22334444555555555555555555554431 122244555555555555 4555555554443 222 234444
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhccC
Q 023915 208 AIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSKQH 264 (275)
Q Consensus 208 li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~ 264 (275)
+...+. ..|++++|.++++++.+.+- .+..++..+..++.+.|+...+..+.+.+
T Consensus 843 ~~~~~~-~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 843 LGWLLV-EKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555554 66888888888888887653 37888888888888888777777666554
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=7.5e-15 Score=134.46 Aligned_cols=243 Identities=13% Similarity=0.032 Sum_probs=129.8
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+.+.|++++|.++++.+.... +.+...|..+..++.+.|++++|.+.|+.+.+.. +.+...+..+...+.+.|+++.
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555554432 2244455555555555555555555555554421 1233344555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
|...++++.+.. +.+..++..+...+...|++++|..+++.+..... .+...+..+...+...|++++|.+.++.+..
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555432 22344555555555555666666666555554432 2333455555566666666666666666544
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHH
Q 023915 164 -SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRN 242 (275)
Q Consensus 164 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~ 242 (275)
.+....+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. ..|++++|.+.|+++.+.. +++...++
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2333345555666666666666666666655532 234445555555554 5566666666666665542 34455566
Q ss_pred HHHHHHHHhhH
Q 023915 243 LILKNSHLFGR 253 (275)
Q Consensus 243 ~li~~~~~~g~ 253 (275)
.+...+...|+
T Consensus 809 ~l~~~~~~~~~ 819 (899)
T TIGR02917 809 NLAWLYLELKD 819 (899)
T ss_pred HHHHHHHhcCc
Confidence 66555555554
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.2e-15 Score=119.53 Aligned_cols=227 Identities=15% Similarity=0.162 Sum_probs=109.6
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
|.+.|+-.+.++|.+++++-.....+.+..+||.+|.+-+-..+ .+++.+|.+..+.||..|||+++++.++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 44555555555555555555554445555555555554332211 34555555555555555555555555555544
Q ss_pred HH----HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHH-HHHHHHHHHh----c---cccc-cHHhHHHHHHHHHhc
Q 023915 82 IL----AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE-ALSVYNMLRY----S---KRSM-CKALHEKILHILISG 148 (275)
Q Consensus 82 ~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~---~~~~-~~~~~~~li~~~~~~ 148 (275)
+. |++++.+|++-|+.|...+|..+|.-+++.++..+ +..++.++.. + ...| +...|...+..|.+.
T Consensus 290 ~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l 369 (625)
T KOG4422|consen 290 EDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSL 369 (625)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHh
Confidence 33 34455555555555555555555555555555433 2223333221 1 1111 223444455555555
Q ss_pred cchHHHHHHHHHhhcCCC----hh------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchh
Q 023915 149 KLLKDAYVVVKDNSESIS----HP------AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREK 218 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~----~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~ 218 (275)
.+.+.|.++..-.....+ ++ -|..+....|.....+.....|+.|...-+-|+..+...++++. ...++
T Consensus 370 ~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~-~v~~~ 448 (625)
T KOG4422|consen 370 RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL-DVANR 448 (625)
T ss_pred hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH-hhcCc
Confidence 555555554443322111 11 12334444555555555555555555554455555555555543 24455
Q ss_pred HHHHHHHHHHHhhCC
Q 023915 219 KELLLKLLEWMTGQG 233 (275)
Q Consensus 219 ~~~a~~l~~~m~~~~ 233 (275)
++-.-++|.+++..|
T Consensus 449 ~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHHHhh
Confidence 555555555555444
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=8.6e-15 Score=116.22 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=181.9
Q ss_pred CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 28 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
.+..+|.++|.++|+-...+.|.+++.+-.....+.+..+||.+|.+-+-..+ .++..+|....++||..|||+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 37789999999999999999999999999999999999999999988665544 67899999999999999999999
Q ss_pred HHHhccCCHHH----HHHHHHHHHhccccccHHhHHHHHHHHHhccchHH-HHHHHHHhhc-------CCChh----HHH
Q 023915 108 FHLGKMRAHSE----ALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD-AYVVVKDNSE-------SISHP----AIK 171 (275)
Q Consensus 108 ~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~-------~~~~~----~~~ 171 (275)
.+..+.|+++. |++++.+|.+-|+.|+..+|..+|.-+++.++..+ |..++.++.+ .+..| .|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56788899999999999999999999998877644 5555555433 22222 456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCCCCh---hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHH
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHAT----GYRIDQ---GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLI 244 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~---~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~l 244 (275)
..+..|.+..+.+-|.++...+... -+.|+. .-|..+....| +....+..+++|+.|.-+-+-|+..+...+
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic-q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC-QMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 7788888999999999988776653 133443 24666776666 778899999999999999999999999999
Q ss_pred HHHHHHhh
Q 023915 245 LKNSHLFG 252 (275)
Q Consensus 245 i~~~~~~g 252 (275)
+++....|
T Consensus 440 lrA~~v~~ 447 (625)
T KOG4422|consen 440 LRALDVAN 447 (625)
T ss_pred HHHHhhcC
Confidence 99886655
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.66 E-value=2.9e-16 Score=90.31 Aligned_cols=50 Identities=34% Similarity=0.765 Sum_probs=37.1
Q ss_pred CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 023915 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (275)
Q Consensus 28 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 77 (275)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.61 E-value=2.2e-15 Score=86.58 Aligned_cols=50 Identities=30% Similarity=0.498 Sum_probs=47.7
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=6.9e-12 Score=110.70 Aligned_cols=151 Identities=6% Similarity=-0.080 Sum_probs=65.9
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a 84 (275)
...|++++|.+.|+.+....+. +...+..+...+.+.|++++|.+.|++..+ +.|+ ...+..+...+...|+++.|
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCChHHH
Confidence 3455555555555555544222 334445555555555555555555555544 2233 23344455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
...++.+....-. +...+..+ ..+.+.|++++|...++.+......+....+..+...+...|++++|...+++.
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555544433211 11122111 224444555555555444433322122222222333444444444444444443
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=6.2e-14 Score=120.05 Aligned_cols=221 Identities=13% Similarity=0.112 Sum_probs=154.2
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
.++..+...|+.||.+||..+|.-||..|+.+.|- +|.-|+-+....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56788899999999999999999999999999998 8888887766666666666666666666665544
Q ss_pred CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh-------ccccccHHh--------------HHHHHHHHHhccchHH-
Q 023915 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY-------SKRSMCKAL--------------HEKILHILISGKLLKD- 153 (275)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~--------------~~~li~~~~~~~~~~~- 153 (275)
.|...||+.|..+|...||+..-..+=+.|.. .|+.....- -.+.+.-.+..|.++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 56666666677777666665442222111211 111110000 0111111222222332
Q ss_pred --------------------------------HHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 023915 154 --------------------------------AYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID 201 (275)
Q Consensus 154 --------------------------------a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 201 (275)
-..+.+...+.+++.+|.+.+..-...|+.+.|..++.+|++.|++.+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 233333333445666888899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 202 QGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 202 ~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
..-|+.|+-+ .+...-+..++.-|.+.|+.|+..|+...+..+.+.|
T Consensus 239 ~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 239 AHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9999999855 4667778899999999999999999999988887744
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.56 E-value=2.2e-11 Score=107.54 Aligned_cols=252 Identities=10% Similarity=-0.015 Sum_probs=187.2
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|...++........ +...+..+...+...|++++|...++.+.... |+.......+..+.+.|+++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~ 194 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLP 194 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHH
Confidence 4577889999999999999876332 56788899999999999999999999886543 33322222233478889999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHH----HHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD----AYVVV 158 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~ 158 (275)
+|..+++.+.+..-.++...+..+..++.+.|++++|...++........ +...+..+-..+...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999877643344455566677888999999999999998866433 45567778888999999886 78888
Q ss_pred HHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCC
Q 023915 159 KDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 159 ~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~ 235 (275)
++... ..+...+..+...+...|++++|...++...+. .|+. ..+..+...+. ..|++++|...++++... .
T Consensus 274 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~-~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 274 RHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALR-QVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh--C
Confidence 88765 223347788899999999999999999998875 3554 45555666665 779999999999988764 4
Q ss_pred CChhh-HHHHHHHHHHhhHHHHHHHHhcc
Q 023915 236 VDSST-RNLILKNSHLFGRQLIADILSKQ 263 (275)
Q Consensus 236 p~~~t-~~~li~~~~~~g~~~~~~~~~~~ 263 (275)
|+... +..+..++...|+...+....+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55433 33345567778865555554443
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=2.3e-13 Score=108.27 Aligned_cols=256 Identities=14% Similarity=0.063 Sum_probs=108.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|+++++........| |..-|..+-..+...++++.|.+.++++...+-. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 35678899999999996654443234 4444555555666789999999999999876533 45567777777 799999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-ccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+-..+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887654 3566677889999999999999999999987543 345677788888999999999999999999
Q ss_pred hhc-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCCh
Q 023915 161 NSE-SIS-HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 161 ~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~ 238 (275)
... .|. +...+.++..+...|+.+++.+++....... +.|...+..+-.+|. ..|+.++|..++++.... -+.|.
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~-~lg~~~~Al~~~~~~~~~-~p~d~ 248 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYL-QLGRYEEALEYLEKALKL-NPDDP 248 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHH-HHT-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhc-cccccccccccccccccc-ccccc
Confidence 776 443 4577889999999999999999998887754 455667777887876 779999999999998763 24478
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHhccCC
Q 023915 239 STRNLILKNSHLFGRQLIADILSKQHM 265 (275)
Q Consensus 239 ~t~~~li~~~~~~g~~~~~~~~~~~~~ 265 (275)
.....+..++...|+...|.-+.+...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 888899999999998888887776543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.51 E-value=1.1e-10 Score=102.98 Aligned_cols=245 Identities=9% Similarity=-0.090 Sum_probs=185.7
Q ss_pred cCcHHHHHHHHHHHHhcC-CCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKY-DKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a 84 (275)
.+++++|.+.|+.....+ ..| +...|+.+...+...|++++|+..|++..+ ..|+ ...|..+...+...|+++.|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 367899999999998764 233 446788888888999999999999999887 3466 44788888889999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE- 163 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 163 (275)
...|++..+.. +-+..+|..+...+...|++++|...|+......+. +...+..+-..+.+.|++++|+..+++...
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999988753 345678888999999999999999999988765433 344566777888899999999999998765
Q ss_pred C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--h------hHHHHHHHHHHhchhHHHHHHHHHHHhhCCC
Q 023915 164 S-ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ--G------IFHIAIARYIAEREKKELLLKLLEWMTGQGY 234 (275)
Q Consensus 164 ~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~------~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~ 234 (275)
. ..+..++.+...+...|++++|...|+...+.. |+. . .++..... ....|++++|.+++++.....
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~-~~~~~~~~eA~~~~~kAl~l~- 538 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALAL-FQWKQDFIEAENLCEKALIID- 538 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHhcC-
Confidence 2 334578888899999999999999999877642 321 1 11222222 224589999999999876643
Q ss_pred CCChhhHHHHHHHHHHhhHHHHHHHH
Q 023915 235 VVDSSTRNLILKNSHLFGRQLIADIL 260 (275)
Q Consensus 235 ~p~~~t~~~li~~~~~~g~~~~~~~~ 260 (275)
+.+...+..+...+...|+...|...
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 23345688888888888855554433
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=3.3e-10 Score=94.51 Aligned_cols=244 Identities=10% Similarity=-0.009 Sum_probs=158.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHH--HHHHHHHccCCHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH--ILIKYFCKEKMYILAY 85 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~ 85 (275)
.|+++.|.+.+....+..-.| ...|-....+..+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777766655432221 12233333344667777777777777765 345554333 2245666777777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc--------------------------------
Q 023915 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-------------------------------- 133 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------------------------------- 133 (275)
..+++..+.. +-+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776654 3345566777777777777777777777666443221
Q ss_pred ---------cHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 023915 134 ---------CKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI 204 (275)
Q Consensus 134 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 204 (275)
++.....+...+...|+.++|.+++++..+.... .--.++.+....++.+++.+..+...+. .|+...
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 2223445566677788888888888877663322 2223445555668888888888887765 366554
Q ss_pred -HHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 205 -FHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 205 -y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
+..+-..+ -..+++++|.+.|+...+. .|+..++..+-..+.+.|+...+....
T Consensus 330 l~l~lgrl~-~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 330 LWSTLGQLL-MKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455554 4789999999999999874 699999999999999999555554443
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=2.9e-10 Score=100.35 Aligned_cols=222 Identities=11% Similarity=-0.023 Sum_probs=174.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+...|++++|+..|+...+..+. +...|..+...+...|++++|...|++..+.. +-+..+|..+...+...|+++.
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 455689999999999999876332 46688899999999999999999999987742 2346788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
|...|++..+.. +.+...+..+...+.+.|++++|+..|+...... +.+...++.+-..+...|++++|.+.|++...
T Consensus 418 A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 418 AGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 999999998763 3356677888889999999999999999887543 23456788889999999999999999998655
Q ss_pred C-CC-hh-------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 164 S-IS-HP-------AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 164 ~-~~-~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
. +. .+ .++.....+...|++++|..+++...+.. |+. ..+..+...+. ..|++++|.+.|++..+.
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~-~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLL-QQGDVDEALKLFERAAEL 571 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Confidence 2 11 11 12222333445699999999999877653 544 46777888876 779999999999998654
No 22
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=5.9e-10 Score=93.44 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=136.7
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a 84 (275)
.+.|+.+.|.+.+....+....+.....-.....+...|+++.|.+.++.+.+.. | +......+...+.+.|+++.|
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHH
Confidence 3445555555555555443222111222223444455555666665555555532 3 223445555555566666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHH---hccCCHHHHHHHHHHHHhcccc---ccHHhHHHHHHHHHhccchHHHHHHH
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHL---GKMRAHSEALSVYNMLRYSKRS---MCKALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
.+++..+.+.++.+.......-..++ ...+..+.+...+..+....+. .+...+..+...+...|+.++|.+++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 66666655554322211111111111 1112222222233322222111 24456666777788888888888888
Q ss_pred HHhhc-CCChhH---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 159 KDNSE-SISHPA---IKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG---IFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 159 ~~~~~-~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
++..+ .++.+. ...........++.+.+.+.++...+. .|+.. ...++-..+. +.|++++|.+.|+....
T Consensus 287 ~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 287 FDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHH
Confidence 88766 333331 111222223346777777777766553 45544 3345555555 77999999999996555
Q ss_pred CCCCCChhhHHHHHHHHHHhhHHHHHHHHhc
Q 023915 232 QGYVVDSSTRNLILKNSHLFGRQLIADILSK 262 (275)
Q Consensus 232 ~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~ 262 (275)
....||...+..+-..+.+.|+...+..+.+
T Consensus 364 ~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 364 CKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5568999999999999999996555555443
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=9.1e-10 Score=84.74 Aligned_cols=199 Identities=10% Similarity=0.025 Sum_probs=146.1
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45677888888889999999999998887642 2235667778888888999999999999888754 334567777888
Q ss_pred HHhccCCHHHHHHHHHHHHhcccc-ccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--CChhHHHHHHHHHHhcCChhH
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRS-MCKALHEKILHILISGKLLKDAYVVVKDNSES--ISHPAIKKFASAFVRLGNINL 185 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~ 185 (275)
.+...|++++|.+.++........ .....+..+...+...|++++|...+.+.... ..+..+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888899999999999888764322 22345566777788888888888888886652 223466777788888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 186 VNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 186 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
|...++...+. .+.+...+..+...+. ..|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIAR-ALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh
Confidence 88888887775 2334455555555553 66888888888777654
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=8.4e-12 Score=99.35 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=106.7
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
+-..++.+.|.+.++.+...+.. +...+..++.. ...+++++|.+++....+.. ++...+...+..+.+.++++.+
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred ccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHH
Confidence 34568899999999999987655 67778888888 79999999999998876643 6667788899999999999999
Q ss_pred HHHHHHHHHcC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 85 YRTMVDMHRKG-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 85 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
..+++...... .+.+...|..+...+.+.|+.++|.+.++......+. +....+.++..+...|+.+++.++++....
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999987543 3567778888999999999999999999998765443 455788899999999999998888888766
Q ss_pred C--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 164 S--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 164 ~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
. .++..+..+..+|...|+.++|...|+...... +.|......+..++. ..|+.++|.++..+.-
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~-~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALE-QAGRKDEALRLRRQAL 275 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccc-cccccccccccccccc
Confidence 3 334466889999999999999999999988753 235666667777764 8899999999887653
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.38 E-value=2.8e-09 Score=100.38 Aligned_cols=252 Identities=11% Similarity=-0.011 Sum_probs=164.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHH------------
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHI------------ 70 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~------------ 70 (275)
.+.+.|++++|.+.|++....... +...+..+-..+...|++++|++.|++..+. .|+. ..+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHH
Confidence 356788999999999999886443 5667778888899999999999999888763 2432 12221
Q ss_pred ------------------------------HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHH
Q 023915 71 ------------------------------LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (275)
Q Consensus 71 ------------------------------li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (275)
+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2233456788888888888887653 224557777888899999999999
Q ss_pred HHHHHHHhccccccHHhHH-------------------------------------------HHHHHHHhccchHHHHHH
Q 023915 121 SVYNMLRYSKRSMCKALHE-------------------------------------------KILHILISGKLLKDAYVV 157 (275)
Q Consensus 121 ~~~~~m~~~~~~~~~~~~~-------------------------------------------~li~~~~~~~~~~~a~~~ 157 (275)
..++.............|. .....+...|+.++|..+
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9998876543221111111 112233445555555555
Q ss_pred HHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 158 VKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 158 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
++. ...++..+..+...+...|+.++|...|+...+.. +.+...+..+...|. ..|+.++|.+.++..... .|+
T Consensus 596 l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~--~p~ 669 (1157)
T PRK11447 596 LRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDI-AQGDLAAARAQLAKLPAT--AND 669 (1157)
T ss_pred HHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcc--CCC
Confidence 552 12233345566777788888888888888877753 224566777777765 568888888888876543 333
Q ss_pred -hhhHHHHHHHHHHhhHHHHHHHHhccCC
Q 023915 238 -SSTRNLILKNSHLFGRQLIADILSKQHM 265 (275)
Q Consensus 238 -~~t~~~li~~~~~~g~~~~~~~~~~~~~ 265 (275)
..+...+-.++...|+...+....+.+.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3445556666667776666655555543
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.2e-09 Score=83.97 Aligned_cols=190 Identities=11% Similarity=0.063 Sum_probs=153.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+...|++++|.+.+++....... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHH
Confidence 4577889999999999999876432 56788899999999999999999999988753 234566778888999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
.|...+++..+....+ ....+..+...+...|++++|...++........ +...+..+...+...|++++|...+++.
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753323 3456777888899999999999999988765433 3456778888999999999999999987
Q ss_pred hcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 162 SES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 162 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
... ..+..+..+...+...|+.+.|..+.+.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 196 QQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 653 2334566778888899999999999887765
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=1.1e-09 Score=91.50 Aligned_cols=214 Identities=12% Similarity=0.005 Sum_probs=149.4
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHH--HHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLN--SMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~ 82 (275)
.+.|+++.|.+.|.++.+. .|+...+- .....+...|+++.|.+.++++.+.. |+ ......+...|.+.|+++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHH
Confidence 5667777777777776654 33332222 23455666677777777777766533 43 344556666677777777
Q ss_pred HHHHHHHHHHHcCCC-----------------------------------------CCHHhHHHHHHHHhccCCHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQ-----------------------------------------PEEELCSSLIFHLGKMRAHSEALS 121 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~-----------------------------------------~~~~~~~~li~~~~~~g~~~~a~~ 121 (275)
.|..++..+.+.+.. .++.....+..++...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777666666654332 233455566778888999999999
Q ss_pred HHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 023915 122 VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SISHP-AIKKFASAFVRLGNINLVNDVMKAIHATGYR 199 (275)
Q Consensus 122 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 199 (275)
+++....... +. -..++.+....++.+++.+..+...+ .++.+ ...++-..+.+.+++++|.+.|+...+. .
T Consensus 285 ~L~~~l~~~~--~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~ 358 (398)
T PRK10747 285 IILDGLKRQY--DE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--R 358 (398)
T ss_pred HHHHHHhcCC--CH--HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 9998876433 33 12234455566999999999998766 44444 5678889999999999999999998875 5
Q ss_pred CChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 200 IDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 200 p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
|+..+|..+-..+. +.|+.++|.+++++-.
T Consensus 359 P~~~~~~~La~~~~-~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 359 PDAYDYAWLADALD-RLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 99999888888875 7899999999998653
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.33 E-value=3.3e-09 Score=99.87 Aligned_cols=246 Identities=11% Similarity=0.011 Sum_probs=179.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~ 82 (275)
.+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...|++..+. .|+ ...+..+...+...++.+
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHH
Confidence 355789999999999999987544 6677888999999999999999999998763 343 333444445567889999
Q ss_pred HHHHHHHHHHHcCCCCCHH---------hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHH
Q 023915 83 LAYRTMVDMHRKGHQPEEE---------LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD 153 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~---------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 153 (275)
+|...++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+-..+.+.|+.++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 9999998865433333322 223456678889999999999872 23344456778888999999999
Q ss_pred HHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 154 AYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 154 a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
|+..|++... ..++.....+...|...|+.++|.+.++...+. .|+. ..+..+-..+. ..|++++|.++++.+.
T Consensus 622 A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~-~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWA-ALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 9999999776 233447788899999999999999999987664 3443 44555566664 6799999999999987
Q ss_pred hCCC--CC---ChhhHHHHHHHHHHhhHHHHHHHH
Q 023915 231 GQGY--VV---DSSTRNLILKNSHLFGRQLIADIL 260 (275)
Q Consensus 231 ~~~~--~p---~~~t~~~li~~~~~~g~~~~~~~~ 260 (275)
...- .| +...+..+-..+...|+...|...
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6432 22 224555566677777744444433
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=1.9e-09 Score=90.42 Aligned_cols=223 Identities=11% Similarity=0.050 Sum_probs=161.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HccCC
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF---CKEKM 80 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~---~~~~~ 80 (275)
.+...|+++.|.+.++.+.+..+. +...+..+...+.+.|+++.|.+++..+.+.++.++......-..++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999998654 66789999999999999999999999999987543332212111222 22333
Q ss_pred HHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH--HhccchHHHH
Q 023915 81 YILAYRTMVDMHRKGH---QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL--ISGKLLKDAY 155 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~a~ 155 (275)
.+.....+..+.+... +.+...+..+...+...|+.++|.+++++............+. ++..+ ...++.+.+.
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHH
Confidence 3333445555544321 1377888999999999999999999999988764444322211 33333 3356778888
Q ss_pred HHHHHhhc-CCChh---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHH
Q 023915 156 VVVKDNSE-SISHP---AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWM 229 (275)
Q Consensus 156 ~~~~~~~~-~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m 229 (275)
+.++...+ .+..+ ...++-..+.+.|++++|.+.|+........|+...+..+...+. +.|+.++|.++|++-
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~-~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD-QAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 88877654 44444 345888999999999999999996445445799999998888876 779999999999874
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=3e-08 Score=78.81 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=182.2
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
-.|++.+|.++...-.+.+.. ....|-.-..+.-+.|+.+.+-+.+.+..+..-.++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 368999999999887777655 4566777788888899999999999998875444566666677777888899999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccH-------HhHHHHHHHHHhccchHHHHHHHH
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK-------ALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
-..++.+.+ +.++........+|.+.|++..+..++..+.+.+.-.++ .+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888888765 445667888899999999999999999998877654433 255666666665555555555666
Q ss_pred Hhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------------------------------ChhhHHH
Q 023915 160 DNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRI------------------------------DQGIFHI 207 (275)
Q Consensus 160 ~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------------------------------~~~~y~~ 207 (275)
+... ..++..-.+++.-+.++|+.++|.++..+-.+.+..| +...+.+
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 6544 3334455667777777777777777766544433222 2234455
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhc
Q 023915 208 AIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSK 262 (275)
Q Consensus 208 li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~ 262 (275)
|-..|. +.+.|.+|.+.|+... ...|+..+|+.+-+++.+.|....++...+
T Consensus 334 LG~L~~-k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 334 LGRLAL-KNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 555544 7799999999999544 468999999999999999996666555544
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=5e-09 Score=91.19 Aligned_cols=215 Identities=9% Similarity=-0.060 Sum_probs=132.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~ 86 (275)
.+++++|...++...+.++. +...+..+-..+...|++++|...|++..+. .|+ ...+..+...+...|++++|..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35577888888877776544 5667777777777788888888888887763 354 3456667777788888888888
Q ss_pred HHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC
Q 023915 87 TMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESI 165 (275)
Q Consensus 87 ~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (275)
.+++..+.. |+. ..+..+...+...|++++|...+++......+-.+..+..+-..+...|+.++|...+.+.....
T Consensus 394 ~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 394 TINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 888877653 332 22333444455677788888888776654332234445566666777888888888887754432
Q ss_pred Ch-h-HHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 166 SH-P-AIKKFASAFVRLGNINLVNDVMKAIHAT-GYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 166 ~~-~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
.. . ..+.+...|...| +.|...++.+.+. +-.|....+..++.++ + |+-+.+. +++++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~--~-g~~~~~~-~~~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA--H-GEAIAEK-MWNKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH--H-hhhHHHH-HHHHhhccc
Confidence 21 1 3344555566666 4666666665553 3334444445555443 2 4444333 337776654
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=9e-09 Score=94.01 Aligned_cols=215 Identities=9% Similarity=-0.067 Sum_probs=144.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 87 (275)
.++.++|...|...... .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+++.|...
T Consensus 489 ~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 489 DTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred hCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 36777788877766654 355444333444445788888888888876543 35545556666777788888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCC
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SIS 166 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~ 166 (275)
+++..+.. +.+...+..+.....+.|++++|...+++.....+ +...+..+-..+.+.|+.++|...+++... .+.
T Consensus 565 l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 565 LQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 88887654 22223333334444456888888888887765544 355677777888888888888888887665 333
Q ss_pred -hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 167 -HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID-QGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 167 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
+..++.+..++...|++++|...++...+. .|+ ...+..+-..+. ..|++++|...+++..+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~-~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQ-RLDDMAATQHYARLVIDD 706 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc
Confidence 335667777788888888888888877664 343 345555666654 668888888888877653
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=1.6e-10 Score=99.75 Aligned_cols=204 Identities=13% Similarity=0.057 Sum_probs=149.5
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 51 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
.++-.+...|+.|+.+||..+|.-||..|+++.|- +|.-|.....+.+...|+.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46778889999999999999999999999999998 9999998888889999999999999999988775
Q ss_pred ccccHHhHHHHHHHHHhccchHH---HHHHHHHhhcC------CC---------------hhHHHHHHHHHHhcCChhHH
Q 023915 131 RSMCKALHEKILHILISGKLLKD---AYVVVKDNSES------IS---------------HPAIKKFASAFVRLGNINLV 186 (275)
Q Consensus 131 ~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~------~~---------------~~~~~~li~~~~~~~~~~~a 186 (275)
.|.+.+|..++.+|...|++.. +.+.+..+... ++ .|.-...+....-.|.|+.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 7788899999999999998665 22211111110 00 11111222222222333333
Q ss_pred HH------------------------------HHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 187 ND------------------------------VMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 187 ~~------------------------------~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
.+ +.+..+...-.|+..+|.++++.-. ..|+.+.|..++.+|++.|++.
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~al-aag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRAL-AAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHH-hcCchhhHHHHHHHHHHcCCCc
Confidence 22 2222222211599999999999865 7899999999999999999999
Q ss_pred ChhhHHHHHHHHHHhh-----HHHHHHHHhccCCCCCcc
Q 023915 237 DSSTRNLILKNSHLFG-----RQLIADILSKQHMKSKSS 270 (275)
Q Consensus 237 ~~~t~~~li~~~~~~g-----~~~~~~~~~~~~~~~~~~ 270 (275)
+.+-|..|+-+ .+ .....-|...++.|....
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 99988888876 33 555666666777776543
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=8.4e-09 Score=79.83 Aligned_cols=220 Identities=11% Similarity=0.072 Sum_probs=151.2
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh------hHHHHHHHHHccC
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN------TFHILIKYFCKEK 79 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~li~~~~~~~ 79 (275)
.-+++.++|.++|-+|.+.... +..+--+|-+.|-+.|..|.|+++.+.+.++ ||.. ..-.|-.-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 3467889999999999875322 4455567888888999999999999888775 5532 3345666788899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccH----HhHHHHHHHHHhccchHHHH
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK----ALHEKILHILISGKLLKDAY 155 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 155 (275)
-+|.|+.+|..+.+.|. --..+...|+.-|-...++++|.++-.++...+..+.. ..|.-+-..+....+++.|.
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999987552 23346778899999999999999998888776544432 24455555555667777777
Q ss_pred HHHHHhhcCCCh-h-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 156 VVVKDNSESISH-P-AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 156 ~~~~~~~~~~~~-~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
.++++....... . .--.+-+.....|+++.|.+.++...+.+..--..+...|..+|. +.|+.++....+.++.+
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~-~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA-QLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 777775542211 1 222344566677777777777777776653333445666666664 66666666666665544
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.23 E-value=2.1e-08 Score=91.69 Aligned_cols=216 Identities=9% Similarity=-0.039 Sum_probs=164.4
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYIL 83 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~ 83 (275)
+...|++++|...|+.+... .|+...+..+..++.+.|++++|.+.|+...+.+ |+.. .+..+.....+.|+++.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 45789999999999998654 4445556777788899999999999999998754 4443 33333444556699999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
|...+++..+. .|+...+..+...+.+.|+.++|...++......+. +...++.+-..+...|+.++|+..+++...
T Consensus 595 Al~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999875 567889999999999999999999999998866433 345777888899999999999999998766
Q ss_pred -CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 164 -SI-SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG-IFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 164 -~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
.+ ++..+..+..++...|++++|...++...+. .|+.. +.-..-... ....+++.+.+-+++--
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~-~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQN-QQRFNFRRLHEEVGRRW 738 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHH-HHHHHHHHHHHHHHHHh
Confidence 33 3447788999999999999999999998874 46543 222222222 23455666666665543
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=3.7e-08 Score=85.80 Aligned_cols=230 Identities=13% Similarity=0.033 Sum_probs=158.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH---------ccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHcc
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYC---------RTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKE 78 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~ 78 (275)
+++++|.++|++..+..+. +...|..+-.++. ..+++++|...+++..+. .|+ ...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHc
Confidence 4567999999998876433 4455655554443 234588999999998874 464 55677777888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
|++++|...|++..+.. +.+...+..+...+...|++++|...++......+.... .+..+...+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999998864 334567888888999999999999999998876554332 2333444566688999999999
Q ss_pred HHhhcC--CChh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHHhchhHHHHHHHHHHHhhC-C
Q 023915 159 KDNSES--ISHP-AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHI-AIARYIAEREKKELLLKLLEWMTGQ-G 233 (275)
Q Consensus 159 ~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~-li~~~~~~~~~~~~a~~l~~~m~~~-~ 233 (275)
++.... +..+ .+..+...+...|+.++|...+..+... .|+...... +...|+ ..| +.+...++.+.+. .
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~-~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC-QNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh-ccH--HHHHHHHHHHHHHhh
Confidence 987653 3333 4667778888999999999999887653 455444443 444444 334 4677766666442 2
Q ss_pred CCCChhhHHHHHHHH
Q 023915 234 YVVDSSTRNLILKNS 248 (275)
Q Consensus 234 ~~p~~~t~~~li~~~ 248 (275)
-.|...-+..++.++
T Consensus 505 ~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 505 RIDNNPGLLPLVLVA 519 (553)
T ss_pred HhhcCchHHHHHHHH
Confidence 233333334444444
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.21 E-value=7.7e-08 Score=86.35 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=74.2
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh---hHHHHHHHHHccCCH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCKEKMY 81 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~ 81 (275)
..+.|+++.|++.|++..+..+.-....+ .++..+...|+.++|+..+++.. .|+.. ....+...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45677888888888777765333112233 66666777777777777777766 23322 222334466666777
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
++|..+|+++.+.. +-+...+..++..+...++.++|++.++.+...
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 77777777777653 223445556666777777777777777666544
No 38
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=4.7e-09 Score=87.87 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=112.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (275)
|..+-..|-.+|..|.|++.|++..+ +.|+ ...|+.|..++-..|++.+|.+.++..+... +--..+.+.|-..|.
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33333334444444444444444443 3333 2345555555555555555555555555432 112234555555555
Q ss_pred ccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC--ChhHHHHHHHHHHhcCChhHHHHH
Q 023915 112 KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESI--SHPAIKKFASAFVRLGNINLVNDV 189 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~ 189 (275)
..|.++.|..+|.....-.... ...++.+-..|-..|++++|+..+++..... ....|+.+-..|-..|+.+.|.+.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred HhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 5555555555555443322221 2245666666666667777766666654421 122566666667777777777777
Q ss_pred HHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHH
Q 023915 190 MKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDS-STRNLILKNS 248 (275)
Q Consensus 190 ~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~-~t~~~li~~~ 248 (275)
+..... +.|.- ...+.|-..| +..|++.+|.+-|++..+ ++||. ..|..++.++
T Consensus 445 y~rAI~--~nPt~AeAhsNLasi~-kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 445 YTRAIQ--INPTFAEAHSNLASIY-KDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHh--cCcHHHHHHhhHHHHh-hccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 665554 23443 3556666665 577888888888877654 46662 4455555443
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.20 E-value=6.7e-08 Score=87.38 Aligned_cols=181 Identities=9% Similarity=-0.020 Sum_probs=87.1
Q ss_pred HccCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc---cHHhHHHHHHHHHhccch
Q 023915 76 CKEKMYILAYRTMVDMHRKGHQ-PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM---CKALHEKILHILISGKLL 151 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~ 151 (275)
...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|...|+.+....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3445556666666665554421 221 11113445556666666666666554332111 122334444455566666
Q ss_pred HHHHHHHHHhhcCCC--------------h---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 023915 152 KDAYVVVKDNSESIS--------------H---PAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIA 214 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~--------------~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 214 (275)
++|..+++.+....+ . ..+..+...+...|+.++|+++++++.... +-+...+..+...+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~- 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ- 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 666666665544211 0 012234455556666666666666655431 222334444444443
Q ss_pred hchhHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 215 EREKKELLLKLLEWMTGQGYVVD-SSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 215 ~~~~~~~a~~l~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
..|+.++|.+.+++.... .|| ...+......+.+.|+...++...
T Consensus 405 ~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred hcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456666666666655543 244 344444444455555444444443
No 40
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=3.4e-11 Score=62.43 Aligned_cols=32 Identities=22% Similarity=0.541 Sum_probs=22.7
Q ss_pred CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 023915 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKL 56 (275)
Q Consensus 25 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 56 (275)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.18 E-value=1e-07 Score=86.23 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=129.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+.+.|++++|.++|+...+..+. +...+..+...+...|++++|+..+++..+. .|+...+..+...+...|+.+.
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWD 134 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHH
Confidence 466677788888888777665222 4555667777777788888888888777664 2433226667777777788888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHH---------------------------------------
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN--------------------------------------- 124 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------------------------------------- 124 (275)
|+..+++..+.. +-+...+..+..++.+.|..+.|++.++
T Consensus 135 Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 135 ELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 888888877652 2233344445555555555554444333
Q ss_pred -------HHHhc-cccccHH-hHH----HHHHHHHhccchHHHHHHHHHhhcCCCh-hHH--HHHHHHHHhcCChhHHHH
Q 023915 125 -------MLRYS-KRSMCKA-LHE----KILHILISGKLLKDAYVVVKDNSESISH-PAI--KKFASAFVRLGNINLVND 188 (275)
Q Consensus 125 -------~m~~~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~li~~~~~~~~~~~a~~ 188 (275)
.+... ...|... .+. ..+..+...|++++|+..|+.+.....+ |.+ ..+..+|...|++++|..
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 22211 1111110 010 0122345567777777777777664321 322 224567777778888888
Q ss_pred HHHHHHHcCCCCC-----hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 189 VMKAIHATGYRID-----QGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 189 ~~~~m~~~g~~p~-----~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
.|+.+.+.. |. ......+..++. ..|++++|..+++.+...
T Consensus 294 ~l~~~l~~~--p~~~~~~~~~~~~L~~a~~-~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 294 ILTELFYHP--ETIADLSDEELADLFYSLL-ESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHHHhhcC--CCCCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHhhc
Confidence 777766532 22 123444444554 567777777777777654
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=4.7e-08 Score=79.21 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=156.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHH-HHHH-----------------------------------HccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSM-LCAY-----------------------------------CRTGDME 47 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~-----------------------------------~~~g~~~ 47 (275)
.+.+.|+++.|.++++.+.+.+-+.-...-|.| .--| .-+|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 477899999999999988875432211111111 1111 1234566
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 48 SVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 48 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
+|.+.|.+.....-.-....||+=+ .+-..|++++|+.+|-.+..- +.-+..+..-+...|-...+...|.+++.+..
T Consensus 508 ka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 6666666655432222222222222 244556677777666665421 12233445555555666666666666665543
Q ss_pred hccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 128 YSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 128 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
.-++.++...+.+-..|-+.|+-.+|...+-+.-. ..+..+..-|...|....-+++++..|+...- ++|+..-|
T Consensus 586 -slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 586 -SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred -ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 23444566677777777777777777776554333 22223555666777777778888888876443 68999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 206 HIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 206 ~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
..+|..|+++.|++..|+++|++.. +.++-|..+..-|++.+...|
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhcccc
Confidence 9999999999999999999999985 468889999999999998888
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=8.3e-09 Score=86.76 Aligned_cols=241 Identities=11% Similarity=-0.014 Sum_probs=159.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCC--CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 80 (275)
.+|-..+++++|.++|+.+.+... .-+..+|++.+.-+-+ +-++..+.+-.-.--+-...||.++-+.|+-.++
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhH
Confidence 356778899999999999987532 2366778888776533 2222332221111122345688888888888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH---HHHHHHhccchHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK---ILHILISGKLLKDAYV 156 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~ 156 (275)
.+.|++.|++..+. .| ..++|+.+-.-+.....+|.|...|+... ..++..|++ +--.|.+.++++.|+-
T Consensus 437 h~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred HHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHH
Confidence 88888888887753 55 56788888888888888888888887654 334455665 4556778888888888
Q ss_pred HHHHhhcCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCC
Q 023915 157 VVKDNSESISH--PAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGY 234 (275)
Q Consensus 157 ~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~ 234 (275)
.|++..+.... .....+...+-+.|+.++|++++++.....-+-...-|...- .+. ..++.++|+..++++++ +
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~-il~-~~~~~~eal~~LEeLk~--~ 586 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS-ILF-SLGRYVEALQELEELKE--L 586 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH-HHH-hhcchHHHHHHHHHHHH--h
Confidence 88887663222 234556677778888888888888876644222222333322 222 35777888888888876 3
Q ss_pred CCC-hhhHHHHHHHHHHhhHHHHH
Q 023915 235 VVD-SSTRNLILKNSHLFGRQLIA 257 (275)
Q Consensus 235 ~p~-~~t~~~li~~~~~~g~~~~~ 257 (275)
.|+ ...|-.+-+.|.+.|+...|
T Consensus 587 vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHH
Confidence 454 56666667778777744433
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.5e-08 Score=85.35 Aligned_cols=212 Identities=9% Similarity=0.042 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCCHHHHHHHH
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA--ISPDYNTFHILIKYFCKEKMYILAYRTM 88 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~ 88 (275)
.++|...|..++..-.. +..+...+-.+|...+++++|.++|+..++.. ..-+..+|.+++-..-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45666666665544222 22455566667777777777777777766521 112344566555433221 122222
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh
Q 023915 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP 168 (275)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (275)
.+-+-.--+-.+.+|.++-.+|.-.++++.|++.|++..+-... ...+|+.+-.-++....+|.|...|+.... .++.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~-~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG-VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc-CCch
Confidence 22211111334557777777777777777777777765543222 234566666666666777777777776443 3344
Q ss_pred HHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 169 AIKK---FASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 169 ~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
.|++ +--.|.+.++++.|+-.|+...+- .|.. +....+...+- +.|+.|+|++++++....
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~-~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQH-QLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHH-HhhhhhHHHHHHHHHHhc
Confidence 5544 345667777777777777665553 3432 23333333332 456677777777766543
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.13 E-value=1.5e-08 Score=84.89 Aligned_cols=238 Identities=13% Similarity=0.012 Sum_probs=128.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~ 85 (275)
.|++..|+.-|++.... .|+- ..|-.|-..|...+.+++|+..|.+... ..|+. ..|..+...|-..|.+|.|.
T Consensus 231 ~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHH
Confidence 34444444444444332 2221 2344444444444444444444443332 33332 23344444445556666666
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 86 RTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 86 ~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
..+++.++. .|+ ...|+.|..++-..|++.+|...|+....-... .....+.+-..+...|.+++|..+|....+-
T Consensus 307 ~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 307 DTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 666665543 444 236666666666666666666666655433221 1224555666666666666666666665442
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC-hhh
Q 023915 165 --ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD-SST 240 (275)
Q Consensus 165 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~-~~t 240 (275)
......+.|...|...|++++|...+++... +.|+. ..|+.+-..|- ..|+.+.|.+.+.+... +.|. ...
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~--~nPt~AeA 458 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQ--INPTFAEA 458 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHh--cCcHHHHH
Confidence 1222556666677777777777777766555 45553 46666666653 56777777777766554 3454 456
Q ss_pred HHHHHHHHHHhhHHHHH
Q 023915 241 RNLILKNSHLFGRQLIA 257 (275)
Q Consensus 241 ~~~li~~~~~~g~~~~~ 257 (275)
.+.|-..|-.+|+...+
T Consensus 459 hsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEA 475 (966)
T ss_pred HhhHHHHhhccCCcHHH
Confidence 66777777777744333
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.13 E-value=3.1e-07 Score=82.55 Aligned_cols=255 Identities=14% Similarity=0.040 Sum_probs=159.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+...|++++|.++|+.+.+..+. +...+..++..+...++.++|++.++.+.. ..|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHH
Confidence 566779999999999999987655 566777888889999999999999999877 45777677555555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHH-----------------------------------------
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV----------------------------------------- 122 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~----------------------------------------- 122 (275)
|+..++++.+.. +-+...+..++.+..+.|-...|.++
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 888888888763 22344555555555555543333322
Q ss_pred -------HHHHHh-ccccccH-HhH-HH---HHHHHHhccchHHHHHHHHHhhcCC-ChhHH--HHHHHHHHhcCChhHH
Q 023915 123 -------YNMLRY-SKRSMCK-ALH-EK---ILHILISGKLLKDAYVVVKDNSESI-SHPAI--KKFASAFVRLGNINLV 186 (275)
Q Consensus 123 -------~~~m~~-~~~~~~~-~~~-~~---li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~li~~~~~~~~~~~a 186 (275)
++.+.. .+..|.. ..| .+ .+-++...+++.++++.++.+...+ ..|.| ..+..+|...+.+++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 222221 1111211 111 12 3446667777888888888877644 23444 4677788888888888
Q ss_pred HHHHHHHHHcC-----CCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC-----------CCCC---hhhHHHHHHH
Q 023915 187 NDVMKAIHATG-----YRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG-----------YVVD---SSTRNLILKN 247 (275)
Q Consensus 187 ~~~~~~m~~~g-----~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~-----------~~p~---~~t~~~li~~ 247 (275)
+.++..+.... ..++......|..+|. ..+++++|..+++.+.+.- -.|| ...+..++..
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l-d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLN-ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 88887775532 1122333566777776 6678888888888776621 1233 2333344555
Q ss_pred HHHhhHHHHHHHHhcc
Q 023915 248 SHLFGRQLIADILSKQ 263 (275)
Q Consensus 248 ~~~~g~~~~~~~~~~~ 263 (275)
+...|+...|+...++
T Consensus 426 ~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 426 LVALNDLPTAQKKLED 441 (822)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 6666655555554443
No 47
>PF12854 PPR_1: PPR repeat
Probab=99.11 E-value=9.7e-11 Score=60.72 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=18.1
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023915 60 AISPDYNTFHILIKYFCKEKMYILAYRTMVDM 91 (275)
Q Consensus 60 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 91 (275)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.1e-07 Score=73.73 Aligned_cols=240 Identities=9% Similarity=0.043 Sum_probs=160.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcC-CCCcH--HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKY-DKYDV--VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g-~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 79 (275)
+.|-+.|.++.|+++.+.+.+.. ..-+. ...-.|-.-|...|-+|.|.++|..+.+.|. --......|+..|-...
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tr 155 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATR 155 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhh
Confidence 45778899999999998888753 22222 2345666778888999999999988877542 22335678888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHH
Q 023915 80 MYILAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (275)
+|++|..+-+++.+.|-.+.. .-|..+...+....+++.|...+....+...+.... --.+-+.....|+++.|.
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-si~lG~v~~~~g~y~~AV 234 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-SIILGRVELAKGDYQKAV 234 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-hhhhhHHHHhccchHHHH
Confidence 999999998888877655543 356677778888888888888888777654443321 123445666788888888
Q ss_pred HHHHHhhcCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 156 VVVKDNSESIS---HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 156 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
+.++...+... +.....|..+|...|+.++....+..+.+....++. -..+-..-....|.-+....+.+++..
T Consensus 235 ~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r- 311 (389)
T COG2956 235 EALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR- 311 (389)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh-
Confidence 88888766322 235677888888889888888888887775322332 222222211133444433334444443
Q ss_pred CCCCChhhHHHHHHHHH
Q 023915 233 GYVVDSSTRNLILKNSH 249 (275)
Q Consensus 233 ~~~p~~~t~~~li~~~~ 249 (275)
+|+..-+..+|+.-.
T Consensus 312 --~Pt~~gf~rl~~~~l 326 (389)
T COG2956 312 --KPTMRGFHRLMDYHL 326 (389)
T ss_pred --CCcHHHHHHHHHhhh
Confidence 588888888887653
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=3.1e-07 Score=73.18 Aligned_cols=223 Identities=10% Similarity=-0.005 Sum_probs=143.2
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHcc
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-------NTFHILIKYFCKE 78 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~ 78 (275)
...|+.+.|..-++++.+.+.. +.........+|.+.|++.....++..|.+.|+--|. .+|+.+++-....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666655443 5556666666777777777777777777666654433 3566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
+..+.-...|++..+. .+-++..-.+++.-+.++|+.++|.++..+-...+..+.. ...-.+.+.++.+.-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHH
Confidence 6655555555554432 2334445556666777777777777777777666665541 1222333444444444444
Q ss_pred HHhhc-CCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 159 KDNSE-SISH-PAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 159 ~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
++-.. .+.. ..+.++-..|.+.+.|.+|...|+.-.+ ..|+..+|+.+-++|- +.|+..+|.+..++-...-.+|
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~-~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALD-QLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHH-HcCChHHHHHHHHHHHHHhcCC
Confidence 43222 3333 4677888999999999999999996555 5799999999999986 7799999999998866444444
Q ss_pred C
Q 023915 237 D 237 (275)
Q Consensus 237 ~ 237 (275)
+
T Consensus 395 ~ 395 (400)
T COG3071 395 N 395 (400)
T ss_pred C
Confidence 4
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.7e-07 Score=79.11 Aligned_cols=228 Identities=16% Similarity=0.126 Sum_probs=164.9
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhc-----CC-CCcHH-hHHHHHHHHHccCCHHHHHHHHHHHhhc-----C-CCCC-hhh
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAK-----YD-KYDVV-LLNSMLCAYCRTGDMESVMHVMRKLDEL-----A-ISPD-YNT 67 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~t 67 (275)
-..|...|+++.|..+++...+. |. .|.+. ..+.+-..|...+++++|..+|+++..- | ..|. ..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35688999999999999887654 32 33443 3445667888899999999999998752 2 2232 346
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH-----cCC-CCCHH-hHHHHHHHHhccCCHHHHHHHHHHHHhc---ccc----c
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHR-----KGH-QPEEE-LCSSLIFHLGKMRAHSEALSVYNMLRYS---KRS----M 133 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~----~ 133 (275)
++.|-..|.+.|++++|...++...+ .|. .|.+. .++.+...|+..++++.|..+++..... .+. .
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 78888899999999998888877652 122 23333 5667888889999999999998865432 111 2
Q ss_pred cHHhHHHHHHHHHhccchHHHHHHHHHhhcC-----C--C---hhHHHHHHHHHHhcCChhHHHHHHHH----HHHcCC-
Q 023915 134 CKALHEKILHILISGKLLKDAYVVVKDNSES-----I--S---HPAIKKFASAFVRLGNINLVNDVMKA----IHATGY- 198 (275)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~---~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~- 198 (275)
...+++.+-..|-..|++++|++++++.... + + ...++.+-..|.+.++.+.|.++|.+ |+..|.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~ 445 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD 445 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence 3457888999999999999999999986441 1 1 22567888899999999999999876 433332
Q ss_pred CCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 199 RID-QGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 199 ~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
.|+ ..+|..|...| +..|+++.|.++.+...
T Consensus 446 ~~~~~~~~~nL~~~Y-~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALY-RAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCchHHHHHHHHHHH-HHcccHHHHHHHHHHHH
Confidence 122 24788899888 47899999999888765
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=4.5e-07 Score=76.56 Aligned_cols=232 Identities=15% Similarity=0.068 Sum_probs=168.2
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhc-----C-CCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CC
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDEL-----A-ISPDYNT-FHILIKYFCKEKMYILAYRTMVDMHRK-----G-HQ 97 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~ 97 (275)
.+...|-..|...|+++.|+.++....+. | .-|...+ .+.+-..|...+++++|..+|+++..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667999999999999999999887653 2 2344444 345777899999999999999998742 2 22
Q ss_pred CC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhc-------cccccHHhHHHHHHHHHhccchHHHHHHHHHhhc------
Q 023915 98 PE-EELCSSLIFHLGKMRAHSEALSVYNMLRYS-------KRSMCKALHEKILHILISGKLLKDAYVVVKDNSE------ 163 (275)
Q Consensus 98 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------ 163 (275)
|. ..+++.|-.+|.+.|++++|...++....- ..+--...++.+...++..+++++|..++....+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 33 247788888999999999888777754421 1111233567788888999999999999887443
Q ss_pred ---C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhh-
Q 023915 164 ---S-ISHPAIKKFASAFVRLGNINLVNDVMKAIHAT----GY--RID-QGIFHIAIARYIAEREKKELLLKLLEWMTG- 231 (275)
Q Consensus 164 ---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~- 231 (275)
. ....+++.|-..|...|++++|.++++..... +. .+. ...++.|-..|. +.++.++|.++|.+-..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHH
Confidence 1 11227889999999999999999999986653 22 222 346777777774 77888888888876432
Q ss_pred ---CCC-CCC-hhhHHHHHHHHHHhhHHHHHHHHhcc
Q 023915 232 ---QGY-VVD-SSTRNLILKNSHLFGRQLIADILSKQ 263 (275)
Q Consensus 232 ---~~~-~p~-~~t~~~li~~~~~~g~~~~~~~~~~~ 263 (275)
.|. .|+ ..+|..|...|.+.|+.+.+..+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 231 233 58999999999999988777766543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.6e-06 Score=70.68 Aligned_cols=158 Identities=9% Similarity=-0.030 Sum_probs=89.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
+.++.+-|+-.++.++|...|++..+.+ +-....|+.+-+-|....+...|.+-++....-.+. +-..|-.+-++|.-
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEI 410 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHH
Confidence 3344444555667777777777766543 222345666666666666666666666665543222 33345556666666
Q ss_pred ccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHH
Q 023915 148 GKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKL 225 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l 225 (275)
.+...-|+-.|++... ..++..+.+|-..|.+.++.++|+..|+.....| ..+...|..|-+.|= +.++..+|...
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye-~l~d~~eAa~~ 488 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYE-ELKDLNEAAQY 488 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHH-HHHhHHHHHHH
Confidence 6666666666666544 2333356666666666666666666666655543 224455666666553 55555555555
Q ss_pred HHHH
Q 023915 226 LEWM 229 (275)
Q Consensus 226 ~~~m 229 (275)
|+.-
T Consensus 489 yek~ 492 (559)
T KOG1155|consen 489 YEKY 492 (559)
T ss_pred HHHH
Confidence 5443
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.8e-06 Score=70.37 Aligned_cols=146 Identities=13% Similarity=0.068 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHH
Q 023915 45 DMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123 (275)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 123 (275)
+.++|...|+...+ +.|.. ..|+.+-+-|...++...|.+-++...+-. +.|-..|-.|-++|.-.+.+.-|+-.|
T Consensus 345 eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 345 EHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred hHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHH
Confidence 44555555555544 22332 234444455555555555555555555432 334455555555555555555555555
Q ss_pred HHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 124 NMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH--PAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 124 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
++...-. +-++..|.++-++|.+.++.++|++.|+.....++. ..+..+.+.|-+.++.++|-..|....
T Consensus 422 qkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 422 QKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5544321 223445555555555555666666555555443333 345555555555555555555555433
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=2.7e-06 Score=68.30 Aligned_cols=227 Identities=13% Similarity=-0.017 Sum_probs=157.0
Q ss_pred cCcHHHHHHHHHHHHhcC-CCCc--HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHH
Q 023915 8 GGCFEEAKQLAGDFEAKY-DKYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~ 83 (275)
.+..+.++.-+.++.... ..|+ ...|..+-..+.+.|+.++|...|++..+. .|+ ...|+.+...+...|+++.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 456677778887777532 2332 356888888899999999999999998874 454 5789999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 84 AYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
|...|+...+. .|+ ..+|..+..++...|++++|.+.|+......+.... .......+...++.++|...+.+..
T Consensus 117 A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY--RALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999875 454 567888888899999999999999988765433221 1122222345678999999997755
Q ss_pred cCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCC-ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 163 ESISHPAIKKFASAFVRLGNINLVNDVMKAIHAT---G--YRI-DQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 163 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g--~~p-~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
...+++.+.. .......|+...+ +.+..+.+. . +.| ....|..+-..+. ..|+.++|...|++....+ +|
T Consensus 193 ~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~-~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 193 EKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYL-SLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred hhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC-Cc
Confidence 5444444432 2333345666554 345554431 1 111 2246777777775 7799999999999998755 34
Q ss_pred ChhhHHHH
Q 023915 237 DSSTRNLI 244 (275)
Q Consensus 237 ~~~t~~~l 244 (275)
|..-+...
T Consensus 269 ~~~e~~~~ 276 (296)
T PRK11189 269 NFVEHRYA 276 (296)
T ss_pred hHHHHHHH
Confidence 54444443
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.4e-07 Score=73.47 Aligned_cols=221 Identities=10% Similarity=-0.042 Sum_probs=175.0
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHH-HHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH-ILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~~~~~~ 81 (275)
+.|.+.|...+|...|+.-.+. .|-+.||-.|-.+|.+..++..|+.+|.+-.+ ..|-.+||- -..+.+-..++.
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhH
Confidence 4677889999999999988876 56777899999999999999999999988766 446666664 556677788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+.|.+++....+.. ..++.....+-..|.-.++++.|+..|+.+.+.|... +..|+.+--+|.-.++++-++.-|...
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-peLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-PELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-hHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999988653 4566677778888888999999999999999988874 447888888888899999999988876
Q ss_pred hcCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 162 SESIS-----HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 162 ~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
..... .+.|-.+-......|++..|.+.|+.....+ .-+...+|.|--. ..+.|++++|..+++....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL-~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVL-AARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHH-HhhcCchHHHHHHHHHhhh
Confidence 55322 2256666677778899999999998877654 2244677776644 3477999999999997765
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.93 E-value=6e-06 Score=72.32 Aligned_cols=254 Identities=13% Similarity=0.073 Sum_probs=174.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~ 82 (275)
.+++ |++++|.+++.+..+..+. +...|-+|-..|-+.|+.+++...+-.. .-+.| |...|..+-....+.|+++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHH
Confidence 3455 9999999999999987654 7789999999999999999999887443 33444 5567888888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhH----HHHHHHHHhccchHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALH----EKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~ 158 (275)
.|.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.+..++.+-.-+ -.+++.+...+..+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998764 455556666777888899999999999888765443332222 23455566666667777777
Q ss_pred HHhhc----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH---------------------------------------
Q 023915 159 KDNSE----SISHPAIKKFASAFVRLGNINLVNDVMKAIHA--------------------------------------- 195 (275)
Q Consensus 159 ~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------------------------------- 195 (275)
..... ....++++.++..+.+...++.+......+..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 76543 33445777777777777777777666665554
Q ss_pred ----------------------cCCCC--ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHh
Q 023915 196 ----------------------TGYRI--DQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLF 251 (275)
Q Consensus 196 ----------------------~g~~p--~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~ 251 (275)
..+.| +...|.-+..+|. ..|++.+|..+|..+...-..-+...|--+-++|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~-~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT-NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH-hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 11111 1123333444554 5677777888887777665555566666677777666
Q ss_pred hHHHHHHHHhcc
Q 023915 252 GRQLIADILSKQ 263 (275)
Q Consensus 252 g~~~~~~~~~~~ 263 (275)
|....|....+.
T Consensus 463 ~e~e~A~e~y~k 474 (895)
T KOG2076|consen 463 GEYEEAIEFYEK 474 (895)
T ss_pred hhHHHHHHHHHH
Confidence 655555444433
No 57
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.7e-07 Score=74.41 Aligned_cols=234 Identities=14% Similarity=0.078 Sum_probs=144.8
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
=.|++..++.-.+ ........+......+.+++.-.|+.+.++ .+..... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3577777776555 332322334556677888888888877544 4444433 6777766666555554455555555
Q ss_pred HHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC
Q 023915 87 TMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESI 165 (275)
Q Consensus 87 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (275)
-+++....+..+ +.......-..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+..
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 544443333332 2222233334566789999998887642 234456678888999999999999999988765
Q ss_pred ChhHHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhH
Q 023915 166 SHPAIKKFASAFV----RLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTR 241 (275)
Q Consensus 166 ~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~ 241 (275)
...+...+..++. -..++++|..+|+++.+. ..++..+.+.+..+.. ..|++++|.+++.+..... +-|..|.
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~-~~~~d~L 238 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKD-PNDPDTL 238 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC--CCHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhc-cCCHHHH
Confidence 5555554544433 334789999999998664 5577778887777766 7799999999998876543 3345666
Q ss_pred HHHHHHHHHhhHH
Q 023915 242 NLILKNSHLFGRQ 254 (275)
Q Consensus 242 ~~li~~~~~~g~~ 254 (275)
..++-.....|+.
T Consensus 239 aNliv~~~~~gk~ 251 (290)
T PF04733_consen 239 ANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHTT-T
T ss_pred HHHHHHHHHhCCC
Confidence 7777777776744
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=4.9e-06 Score=66.77 Aligned_cols=193 Identities=9% Similarity=-0.002 Sum_probs=135.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~ 82 (275)
.+.+.|+.++|...|+...+..+. +...|+.+-..+...|++++|.+.|+...+ +.|+ ..+|..+...+...|+++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 466789999999999999887544 678999999999999999999999999987 4575 457788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
+|.+.|+...+. .|+..........+...++.++|...|....... .++ .|.. .......|+...+ +.+..+.
T Consensus 150 eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 150 LAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE--QWGW-NIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc--ccHH-HHHHHHccCCCHH-HHHHHHH
Confidence 999999999875 4543322222223445678999999997654332 222 1221 1222234554433 2333332
Q ss_pred cC---------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 023915 163 ES---------ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHI 207 (275)
Q Consensus 163 ~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~ 207 (275)
.. .....|..+...+...|++++|...|+...+.+ +||..-+..
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 21 112257788899999999999999999988754 345444443
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.87 E-value=2.2e-05 Score=67.22 Aligned_cols=225 Identities=15% Similarity=0.047 Sum_probs=141.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH----c
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFC----K 77 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~ 77 (275)
..+...|++++|++.++.-... -+|. ..+...-..+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4567789999999998775543 3354 456677778888999999999999998865 77777655444443 1
Q ss_pred --cCCHHHHHHHHHHHHH----------------------------------cCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 023915 78 --EKMYILAYRTMVDMHR----------------------------------KGHQPEEELCSSLIFHLGKMRAHSEALS 121 (275)
Q Consensus 78 --~~~~~~a~~~~~~m~~----------------------------------~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (275)
..+.+....+++++.. .|++ .+|+.|-..|.......-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 1245555666666543 2221 234444444443334444444
Q ss_pred HHHHHHhc--------------cccccHHhH--HHHHHHHHhccchHHHHHHHHHhhc-CCC-hhHHHHHHHHHHhcCCh
Q 023915 122 VYNMLRYS--------------KRSMCKALH--EKILHILISGKLLKDAYVVVKDNSE-SIS-HPAIKKFASAFVRLGNI 183 (275)
Q Consensus 122 ~~~~m~~~--------------~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~ 183 (275)
++...... .-+|+...| .-+-+.|-..|++++|++.+++..+ .|+ +..|..-.+.+-..|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 44443321 112333233 3455666778888888888887555 333 33666777888888888
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 184 NLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 184 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
++|.+.++..+.... -|...=+.....+. +.|++++|.+++......+..|
T Consensus 245 ~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L-Ra~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 245 KEAAEAMDEARELDL-ADRYINSKCAKYLL-RAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHHhCCh-hhHHHHHHHHHHHH-HCCCHHHHHHHHHhhcCCCCCc
Confidence 888888888777542 24444444454444 7788888888888887766544
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=2.8e-06 Score=69.22 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=151.9
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
-+|++++|.+.+.+....+..-....||+=+ .+-..|+.++|++.|-.+..- +.-+......+.+.|-...+...|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4699999999999998764333333444433 345679999999999887642 23455666777888888999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CC
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SI 165 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~ 165 (275)
++.+.... ++-|+...+.|-+.|-+.|+...|++.+-+-- .-.+.+..+...+-.-|....-++.++..|++..- .+
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 98776532 45567889999999999999999998865432 22344555677788888888889999999998654 66
Q ss_pred ChhHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 023915 166 SHPAIKKFASAF-VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARY 212 (275)
Q Consensus 166 ~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 212 (275)
+...|..||..| .+.|++++|..+++.... .++-|..+..-|++.+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~ 704 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIA 704 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHh
Confidence 677888887655 567999999999999877 4667888888887764
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=1.7e-05 Score=59.14 Aligned_cols=203 Identities=12% Similarity=0.059 Sum_probs=156.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (275)
+...|--+|.+.|+...|..-+++..+. .|+ ..+|..+...|-+.|..+.|.+-|+...... +-+..+.|..-..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4566777899999999999999998884 355 4578888889999999999999999987653 23445777888888
Q ss_pred hccCCHHHHHHHHHHHHhccc-cccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHH
Q 023915 111 GKMRAHSEALSVYNMLRYSKR-SMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVN 187 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 187 (275)
|..|++++|...|+....... .-...+|..+.-+..+.|+.+.|.+.|++... ...+++.-.+.......|+...|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998776533 33345788888888899999999999998765 344557788889999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhH
Q 023915 188 DVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTR 241 (275)
Q Consensus 188 ~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~ 241 (275)
..++.....+. ++..+....|+. .+..|+-+.+.+.=..+... .|...-|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iri-ak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRI-AKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHH-HHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99998888665 888888877765 46778888666665555543 3444333
No 62
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.79 E-value=8.7e-09 Score=54.07 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=22.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 64 (275)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777776666665
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.74 E-value=3.1e-05 Score=66.30 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=156.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHcc-----CCHHHHHHHHHHHhhcC---CCC--------C--
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRT-----GDMESVMHVMRKLDELA---ISP--------D-- 64 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g---~~p--------~-- 64 (275)
..+.+.|+.++|..+|..+...++. |..-|..+..+..-. .+.+...++|+++.+.- ..| +
T Consensus 46 ~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~ 124 (517)
T PF12569_consen 46 ELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGD 124 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHH
Confidence 4578899999999999999988543 444555555555222 24666777777775431 000 0
Q ss_pred ------------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHH
Q 023915 65 ------------------YNTFHILIKYFCKEKMYILAYRTMVDMHRK----G----------HQPEE--ELCSSLIFHL 110 (275)
Q Consensus 65 ------------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g----------~~~~~--~~~~~li~~~ 110 (275)
..+|+.|-..|....+.+-..+++...... | -.|+. .++..+-..|
T Consensus 125 ~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 125 EFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 124455555555555555556666665432 1 13444 3456667788
Q ss_pred hccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh--HHHHHHHHHHhcCChhHHHH
Q 023915 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP--AIKKFASAFVRLGNINLVND 188 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~ 188 (275)
-..|+.++|+++.+......++ ....|..--+.+-+.|++.+|.+.++....--..+ .-+.....+.+.|++++|.+
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999987766433 25578888899999999999999999877633333 44567889999999999999
Q ss_pred HHHHHHHcCCCCChhhH--------HHHHHHHHHhchhHHHHHH-------HHHHHhhCCC--------CCChhhHHHHH
Q 023915 189 VMKAIHATGYRIDQGIF--------HIAIARYIAEREKKELLLK-------LLEWMTGQGY--------VVDSSTRNLIL 245 (275)
Q Consensus 189 ~~~~m~~~g~~p~~~~y--------~~li~~~~~~~~~~~~a~~-------l~~~m~~~~~--------~p~~~t~~~li 245 (275)
++......+..|-...+ ...-.+|. +.|++..|++ .|+++.+..+ +.+..+|..++
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~-r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L 362 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYL-RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDML 362 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHH
Confidence 99998877654433222 22333444 3455555554 4455544332 24455555555
Q ss_pred HH
Q 023915 246 KN 247 (275)
Q Consensus 246 ~~ 247 (275)
+.
T Consensus 363 ~~ 364 (517)
T PF12569_consen 363 RW 364 (517)
T ss_pred HH
Confidence 54
No 64
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.73 E-value=2e-08 Score=52.26 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISP 63 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 63 (275)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=2.7e-05 Score=58.02 Aligned_cols=199 Identities=9% Similarity=-0.011 Sum_probs=156.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~ 81 (275)
-.|.+.|+...|..-+++..+.++. +..+|..+-..|.+.|..+.|.+-|+...+ +.|+. ...|.--..+|..|.+
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCCh
Confidence 3688999999999999999998655 677999999999999999999999999887 44654 4567777778999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++|.+.|++....---| -..+|..+.-+..+.|+.+.|...|++-......... ....+.+...+.|++..|...++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999988643222 2358999999999999999999999988776544333 566788888899999999999998
Q ss_pred hhcCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 023915 161 NSESISH--PAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHI 207 (275)
Q Consensus 161 ~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~ 207 (275)
....... .+.-.-|+.-.+.|+-+.+.+.=..+... -|...-|..
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 7765443 24455577777888888887776666653 455555443
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=1.6e-06 Score=68.97 Aligned_cols=217 Identities=13% Similarity=0.143 Sum_probs=135.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHH-HHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH-ILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~~~~~~~ 82 (275)
++.-.|+.+.+ +.++... ..|.......+-..+...++-+.++.-+++....+..++..++. .....+...|+++
T Consensus 44 s~iAlg~~~~v---l~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 44 SYIALGQYDSV---LSEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHTT-HHHH---HHHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHcCChhHH---HHHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 34444554433 3344333 36677766555555544455566666666655444433333333 3335577789999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc-HHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC-KALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
.|++++..- .+.......+..|.+.++++.|.+.++.|.+....-. .....+.+....-.+.+.+|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 999888652 4566777889999999999999999999986532211 112233343333445799999999999
Q ss_pred hcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhH-HHHHHHHHHHhhC
Q 023915 162 SES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKK-ELLLKLLEWMTGQ 232 (275)
Q Consensus 162 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~-~~a~~l~~~m~~~ 232 (275)
.+. .++...+.+..++...|++++|..++.+..+.+ +-+..+...++-... ..|+. +.+.+++.+++..
T Consensus 194 ~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 194 SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSL-HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHH
T ss_pred HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHh
Confidence 875 344477888899999999999999998866543 223445444554433 55555 6788899988764
No 67
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.66 E-value=4.9e-08 Score=51.12 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (275)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37888888999999999999999988888888873
No 68
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.64 E-value=6.3e-08 Score=50.37 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP 98 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 98 (275)
.||+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 69
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.62 E-value=1.2e-06 Score=57.58 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHhc-------hhHHHHHHHHHHHhhCCCCCChhhHHH
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHATGY-RIDQGIFHIAIARYIAER-------EKKELLLKLLEWMTGQGYVVDSSTRNL 243 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~~~~~~-------~~~~~a~~l~~~m~~~~~~p~~~t~~~ 243 (275)
.-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++.-+++.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456667777999999999999999999 999999999999987441 144568899999999999999999999
Q ss_pred HHHHHHHh
Q 023915 244 ILKNSHLF 251 (275)
Q Consensus 244 li~~~~~~ 251 (275)
++.++.+.
T Consensus 110 vl~~Llkg 117 (120)
T PF08579_consen 110 VLGSLLKG 117 (120)
T ss_pred HHHHHHHh
Confidence 99988664
No 70
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.61 E-value=8.2e-07 Score=58.35 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=61.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCChhhHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCCHHh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDYNTFHILIKYFCKEK--------MYILAYRTMVDMHRKGHQPEEEL 102 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~ 102 (275)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566667777888888888888888888 888888888888877653 23346778888888888888888
Q ss_pred HHHHHHHHhc
Q 023915 103 CSSLIFHLGK 112 (275)
Q Consensus 103 ~~~li~~~~~ 112 (275)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.5e-05 Score=64.30 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=160.2
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
-+|+...|..-|+........++. .|--+-..|....+.++.+..|++..+-+ +-|..+|..--....-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 357888888999988876554333 27778888999999999999999987732 1244567777777777888999999
Q ss_pred HHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-C
Q 023915 87 TMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-S 164 (275)
Q Consensus 87 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~ 164 (275)
=|+..... .| +...|--+--+.-|.+++++++..|++.... .+-.+..|+..-..+...++++.|.+.|+.... .
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99988764 44 4456666666777889999999999998755 444556899999999999999999999997554 1
Q ss_pred C--------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 165 I--------SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRI-DQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 165 ~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
+ ..|..+.-+-.+.=.+++..|.++++...+.. | ....|-.|-..-+ +.|+.++|.++|++-..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~l-Q~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFEL-QRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 1 12222222222222388999999998877743 3 3457888887766 77999999999997543
No 72
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=6.2e-06 Score=63.75 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=151.4
Q ss_pred CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 023915 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELC 103 (275)
Q Consensus 25 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 103 (275)
|+.....-|++.+..+.+..++.+|++++..-.++. | +....+.|-..|....++..|-..++++... -|...-|
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 444444557888888889999999999998877754 5 6677888888999999999999999998764 5665555
Q ss_pred HH-HHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH--HhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhc
Q 023915 104 SS-LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL--ISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180 (275)
Q Consensus 104 ~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 180 (275)
.. -...+-+.+.+..|+.+...|... +....-..-+.+- -..+++..+..++++....+...+.+..-....+.
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 43 345566788899999999888643 1111111122222 24688888999999887767777777777778899
Q ss_pred CChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCC
Q 023915 181 GNINLVNDVMKAIHAT-GYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 181 ~~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~ 235 (275)
|+.+.|.+-|+...+. |..| ...||.-+..| +.++.+.|.++..++.++|++
T Consensus 158 gqyEaAvqkFqaAlqvsGyqp-llAYniALaHy--~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY--SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH--hhhhHHHHHHHHHHHHHhhhh
Confidence 9999999999987775 6554 57899888776 458888899999999988764
No 73
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.56 E-value=4.3e-05 Score=67.80 Aligned_cols=224 Identities=11% Similarity=0.058 Sum_probs=154.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHc----------
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCK---------- 77 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~---------- 77 (275)
++..+|..++.+....+ .-|+..++.+-..+.+...+..|.+-|....+.- ..+|+...-+|-+.|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 56667777777766533 2245555556666777777777777665555432 23666666666665543
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHH
Q 023915 78 --EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (275)
Q Consensus 78 --~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (275)
.+..++|+++|.+.++.. +-|..+-|-+--.++..|+++.|..+|.+....... ...+|-.+-.+|...|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHH
Confidence 245678999999888753 456667777888889999999999999999877552 2236888999999999999999
Q ss_pred HHHHHhhc----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--H---------------H
Q 023915 156 VVVKDNSE----SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARY--I---------------A 214 (275)
Q Consensus 156 ~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~--~---------------~ 214 (275)
++|+.... ..++...+.|.+++.+.|.+.+|.+.+.........-...-||..+-.. + .
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99998554 3344567888899999999999998876655543222334555544322 0 1
Q ss_pred hchhHHHHHHHHHHHhhCCCC
Q 023915 215 EREKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 215 ~~~~~~~a~~l~~~m~~~~~~ 235 (275)
..+..+.|.++|.+|...+-+
T Consensus 781 a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 781 AVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 134577789999999876543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00018 Score=59.43 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=128.0
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHH---HHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCC
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNS---MLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKM 80 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~ 80 (275)
+...|++++|.+.++...+..+. |...++. ........+..+.+.+.+.. ..+..|+. .....+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 45678888999988888776332 3334442 11112223455555555544 12233433 233455567788899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccc-cccH--HhHHHHHHHHHhccchHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-SMCK--ALHEKILHILISGKLLKDAYVV 157 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~ 157 (275)
++.|...+++..+.. +.+...+..+-..+...|++++|...++....... .+.. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999988764 34456777788888889999999999887765432 2222 2344677778888999999999
Q ss_pred HHHhhcCCC-hhHH----H--HHHHHHHhcCChhHHHHH--HHHHHHcCCCCChhhHH--HHHHHHHHhchhHHHHHHHH
Q 023915 158 VKDNSESIS-HPAI----K--KFASAFVRLGNINLVNDV--MKAIHATGYRIDQGIFH--IAIARYIAEREKKELLLKLL 226 (275)
Q Consensus 158 ~~~~~~~~~-~~~~----~--~li~~~~~~~~~~~a~~~--~~~m~~~g~~p~~~~y~--~li~~~~~~~~~~~~a~~l~ 226 (275)
+++...... .+.. + .++.-+...|..+.+.+. ...............+. ....+++ ..|+.+.|..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~a~~~L 287 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA-GAGDKDALDKLL 287 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh-cCCCHHHHHHHH
Confidence 988653211 1211 1 223334444443333332 11111111111111222 2333433 567788898888
Q ss_pred HHHhhC
Q 023915 227 EWMTGQ 232 (275)
Q Consensus 227 ~~m~~~ 232 (275)
+.+...
T Consensus 288 ~~l~~~ 293 (355)
T cd05804 288 AALKGR 293 (355)
T ss_pred HHHHHH
Confidence 888653
No 75
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.55 E-value=3.5e-06 Score=62.35 Aligned_cols=89 Identities=16% Similarity=0.265 Sum_probs=73.6
Q ss_pred CCChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH---------------HhchhHHHHH
Q 023915 164 SISHPAIKKFASAFVR-----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYI---------------AEREKKELLL 223 (275)
Q Consensus 164 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~---------------~~~~~~~~a~ 223 (275)
..+..+|..++..|.+ .|+.+-....++.|.+.|+.-|..+|+.||+.+= .-..+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4445566666666654 4788888899999999999999999999999752 1133567799
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 224 KLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 224 ~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
+++++|+..|+-||..|+..|+..+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 99999999999999999999999998888
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.53 E-value=0.00019 Score=63.36 Aligned_cols=247 Identities=13% Similarity=0.083 Sum_probs=156.0
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHH----HHHHHccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHc
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSM----LCAYCRTGDMESVMHVMRKLDEL-AISPDYNTFHILIKYFCK 77 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~ 77 (275)
..|-+.|+...|.+-|.++....+..|..-+..+ +..+...++-+.|.+.++...+. +-..+...++.++..+.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 3456677777777777777765432233333333 33455556667777776666542 233445567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCC---------------------------CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 78 EKMYILAYRTMVDMHRKGHQ---------------------------PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~---------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
...++.|......+.....+ ++..+ -.++-++.+....+...-+...+....
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhc
Confidence 77788877777777652112 22222 123333444444444444444444444
Q ss_pred --ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 131 --RSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH---PAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 131 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
+.-....|.-+..+|...|++.+|+.+|..+...... ..|-.+...|...|..+.|.+.|+..... .|+..--
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~ 485 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDA 485 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhh
Confidence 4445567888889999999999999999998774332 26777888999999999999999988774 4554333
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHHhh
Q 023915 206 HIAIARYIAEREKKELLLKLLEWMT--------GQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 206 ~~li~~~~~~~~~~~~a~~l~~~m~--------~~~~~p~~~t~~~li~~~~~~g 252 (275)
.+=+.....+.|+.++|.+.+..|. ..++.|+...-......+...|
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 3333333346789999999999854 3346676666656666666666
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=2.8e-05 Score=60.22 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=102.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCH-Hh
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQ-PEE-EL 102 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~ 102 (275)
....+-.+...+.+.|++++|...|++.... .|+. .++..+...+.+.|+++.|...++++.+..-. |.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4455666666666777777777777766552 2332 24555666667777777777777776654211 111 12
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHhccccccHH----------------hHHHHHHHHHhccchHHHHHHH
Q 023915 103 CSSLIFHLGKM--------RAHSEALSVYNMLRYSKRSMCKA----------------LHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 103 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~----------------~~~~li~~~~~~~~~~~a~~~~ 158 (275)
+..+-.++.+. |+.+.|.+.|+.+....+..... ....+-..+.+.|++.+|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33333333332 56667777777665432221100 0113456688899999999999
Q ss_pred HHhhcC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 159 KDNSES-IS----HPAIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 159 ~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
++.... +. +..+..+..++...|++++|...++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 987653 22 236778899999999999999998887764
No 78
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.00021 Score=60.05 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=158.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
-|-..+++++.+++++.+.+.. +++...+-.=|.++...|+..+-+.+=.+|.+. .+-...+|-++--.|.-.|+.++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3556788888888888888753 345566666677777777777766666666653 33334567777777777777778
Q ss_pred HHHHHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhc--------------------------------c
Q 023915 84 AYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSVYNMLRYS--------------------------------K 130 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------------------~ 130 (275)
|.+.|...... .|.- ..|-..-..|+-.|..|+|+..+...-+- +
T Consensus 331 ARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 331 ARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 87777775532 3321 25555566666666666665554432210 1
Q ss_pred ccc-cHHhHHHHHHHHHhccchHHHHHHHHHhhc---------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 023915 131 RSM-CKALHEKILHILISGKLLKDAYVVVKDNSE---------SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRI 200 (275)
Q Consensus 131 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 200 (275)
+.| ++...+-+--..-..+.+.+|..+|+.... ....|+++.|-.+|.+.+..++|+..++.-.... +-
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k 487 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PK 487 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CC
Confidence 111 222222222222345677888888876441 1245678899999999999999999999877753 34
Q ss_pred ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHh
Q 023915 201 DQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLF 251 (275)
Q Consensus 201 ~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~ 251 (275)
+..+|.++--.|. ..|+++.|.+.|.+-. .+.||-.+...++..+...
T Consensus 488 ~~~~~asig~iy~-llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 488 DASTHASIGYIYH-LLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred chhHHHHHHHHHH-HhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 6677777776665 6799999999999754 5789988888888766443
No 79
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.49 E-value=3.4e-06 Score=69.78 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=102.9
Q ss_pred cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC-----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 023915 130 KRSMCKALHEKILHILISGKLLKDAYVVVKDNSES-----ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI 204 (275)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 204 (275)
+.+.+......+++.+....+++.+..++-+.... ..+.|.+++++.|...|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556666777888888888888888887776653 2234778999999999999999999999888999999999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHh
Q 023915 205 FHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLF 251 (275)
Q Consensus 205 y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~ 251 (275)
||.||+.+. +.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl-~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFL-KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHh-hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999998 7799999999999999998888889999889888877
No 80
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.48 E-value=5.6e-06 Score=68.55 Aligned_cols=124 Identities=13% Similarity=-0.002 Sum_probs=103.5
Q ss_pred CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 023915 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL--AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEEL 102 (275)
Q Consensus 25 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 102 (275)
+...+......+++.+....+.+.+..++-..+.. ....-..|..++|+.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34557788888999999999999999998888865 3334445667999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
|+.||+.+.+.|++..|.++..+|.......++.++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888776666667777666666655
No 81
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.48 E-value=1.9e-07 Score=47.32 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=18.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELA 60 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 60 (275)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=6.8e-06 Score=64.32 Aligned_cols=194 Identities=12% Similarity=0.044 Sum_probs=152.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
++|.+..+...|+.+|.+-.+. .+-|+....-+-+.+-..++.++|.++|+...+.. +-++.....+..+|.-.++++
T Consensus 264 kvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChH
Confidence 5688889999999999888765 22244455667777888899999999999887632 234555666777888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccc--cccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR--SMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
.|+..++++++.|+ .+...|+.+--+|.-.+++|.++.-|+.....-. .....+|-.+-...+..|++..|...|+-
T Consensus 342 ~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 342 MALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 99999999999995 5667899999999999999999999998776433 33345677787888889999999999997
Q ss_pred hhcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 023915 161 NSES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID 201 (275)
Q Consensus 161 ~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 201 (275)
.... .....+|.|.-.-.+.|+++.|..+++..... .|+
T Consensus 421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~ 461 (478)
T KOG1129|consen 421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV--MPD 461 (478)
T ss_pred HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--Ccc
Confidence 6553 23347888888889999999999999887663 354
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=6.5e-05 Score=58.21 Aligned_cols=167 Identities=9% Similarity=-0.027 Sum_probs=116.7
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hH
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE---ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LH 138 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~ 138 (275)
....+-.+...+.+.|+++.|...|++..... +.+. .++..+..++.+.|++++|...++.+....+..... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44567778888999999999999999987653 2222 467778889999999999999999998654432221 23
Q ss_pred HHHHHHHHhc--------cchHHHHHHHHHhhc-CCChh-HH-----------------HHHHHHHHhcCChhHHHHHHH
Q 023915 139 EKILHILISG--------KLLKDAYVVVKDNSE-SISHP-AI-----------------KKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 139 ~~li~~~~~~--------~~~~~a~~~~~~~~~-~~~~~-~~-----------------~~li~~~~~~~~~~~a~~~~~ 191 (275)
..+-.++... |+.++|.+.+++... .+..+ .. ..+...|.+.|++++|...+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3333344433 778899999998765 22222 11 134456778899999999988
Q ss_pred HHHHcC--CCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 192 AIHATG--YRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 192 ~m~~~g--~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
...+.. -+.....+..+..++. +.|++++|..+++.+..+
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 877652 1123456777777775 778889999988887654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=0.00046 Score=56.98 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=134.2
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~ 85 (275)
.+..+.+.+.+.. .....|+. .....+...+...|++++|.+.+++..+.. |+ ...+..+...+...|++++|.
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~ 168 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGI 168 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555544 12223333 344566678889999999999999998853 54 556778888999999999999
Q ss_pred HHHHHHHHcCC-CCCH--HhHHHHHHHHhccCCHHHHHHHHHHHHhccc-cccHHhH-H--HHHHHHHhccchHHHHHH-
Q 023915 86 RTMVDMHRKGH-QPEE--ELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-SMCKALH-E--KILHILISGKLLKDAYVV- 157 (275)
Q Consensus 86 ~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~- 157 (275)
.++++.....- .|+. ..|..+...+...|+.++|..+++....... .+..... + .++.-+...|....+..+
T Consensus 169 ~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~ 248 (355)
T cd05804 169 AFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWE 248 (355)
T ss_pred HHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHH
Confidence 99999876432 2332 3455788889999999999999999754322 1111111 1 233333344433322222
Q ss_pred -HHHh-hcC-C-ChhHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C-h---hhHHHHHHHHH-HhchhHHHHHH
Q 023915 158 -VKDN-SES-I-SHPAI--KKFASAFVRLGNINLVNDVMKAIHATGYRI--D-Q---GIFHIAIARYI-AEREKKELLLK 224 (275)
Q Consensus 158 -~~~~-~~~-~-~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~-~---~~y~~li~~~~-~~~~~~~~a~~ 224 (275)
+... ... . ....+ .....++...|+.+.|..++..+....-.+ . . .+-..++.+.. ...|+.++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~ 328 (355)
T cd05804 249 DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALE 328 (355)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHH
Confidence 1111 111 1 11122 256778888999999999999987743221 1 0 11122222221 24688888998
Q ss_pred HHHHHhh
Q 023915 225 LLEWMTG 231 (275)
Q Consensus 225 l~~~m~~ 231 (275)
++.+...
T Consensus 329 ~L~~al~ 335 (355)
T cd05804 329 LLGPVRD 335 (355)
T ss_pred HHHHHHH
Confidence 8887654
No 85
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.40 E-value=0.00099 Score=57.29 Aligned_cols=251 Identities=12% Similarity=-0.003 Sum_probs=177.2
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 85 (275)
-..|++..|..++....+.... +...|-.-+..-..+..++.|..+|.+.+. ..|+...|.--++.-.-.+..++|.
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 3568899999999888887555 778888888888999999999999988776 5588888877777777778899999
Q ss_pred HHHHHHHHcCCCCCHH-hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-
Q 023915 86 RTMVDMHRKGHQPEEE-LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE- 163 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 163 (275)
+++++.++. -|+.. .|-.+-+.+-+.++++.|.+.|..=.. .++-+...|-.+.+.=-+.|++-.|..+++...-
T Consensus 672 rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999888764 45543 566666677777888888777765332 2333344666666666677888889888887543
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-------------------------CCCChhhHHHHHHHHH
Q 023915 164 -SISHPAIKKFASAFVRLGNINLVNDVMKAIHAT----G-------------------------YRIDQGIFHIAIARYI 213 (275)
Q Consensus 164 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-------------------------~~p~~~~y~~li~~~~ 213 (275)
..+...|-..|++=.+.|+.+.|..+.....+. | +.-|....-++-..|.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 334447788888888999888888776554332 1 1222223333334444
Q ss_pred HhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhccC
Q 023915 214 AEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSKQH 264 (275)
Q Consensus 214 ~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~ 264 (275)
...+++.|.+.|.+..+.+ +-+-.+|..+.+-+..+|.+.....+.+.+
T Consensus 829 -~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 829 -SEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred -HHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4577888999999887643 234578889999999999555555444433
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=0.00059 Score=63.20 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=173.7
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-----YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELC 103 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 103 (275)
+...|-..|.-..+.++.++|.+++++.... +.+. ...|.++++.-.--|.-+...++|++..+.- -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4567888899999999999999999998753 3232 2356777777677777888899999988652 223478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh----hHHHHHHHHHHh
Q 023915 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH----PAIKKFASAFVR 179 (275)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~li~~~~~ 179 (275)
..|..-|.+.+..++|.++|+.|.++-. -....|......+.+..+-+.|..++.+....... .....++..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8999999999999999999999987633 45568999999999999999999999987664333 245566777788
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHHhhHHHHH
Q 023915 180 LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDS--STRNLILKNSHLFGRQLIA 257 (275)
Q Consensus 180 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~--~t~~~li~~~~~~g~~~~~ 257 (275)
.|+.+.+..+|+.....- +--...|+..|+.=. +.|..+.+..+|++....++.|-. ..|.-.++.=-..|.+.-.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~ei-k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEI-KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHH-ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 999999999999988753 335678999999866 667788899999999999988763 5666666655556644443
Q ss_pred HH
Q 023915 258 DI 259 (275)
Q Consensus 258 ~~ 259 (275)
+.
T Consensus 1691 E~ 1692 (1710)
T KOG1070|consen 1691 EY 1692 (1710)
T ss_pred HH
Confidence 33
No 87
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.36 E-value=6.9e-07 Score=45.22 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=21.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGH 96 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 96 (275)
||+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 88
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.32 E-value=1.1e-05 Score=59.72 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=72.9
Q ss_pred CCcHHhHHHHHHHHHcc-----CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc----------------CCHHHHH
Q 023915 27 KYDVVLLNSMLCAYCRT-----GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE----------------KMYILAY 85 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----------------~~~~~a~ 85 (275)
..|..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 55888999999988765 66777777888899999999999999999987653 2345588
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
+++++|...|+.||..++..+++.|++.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 8888888888888888888888888877664
No 89
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00037 Score=58.57 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=130.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHHHHHH
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~ 87 (275)
|+..+|.+.|...-..+.. =...|-..-..|+-.|..|.|+..+...-+- -|..+ -+--+---|.+.++.+.|.++
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 4455555555444322111 1234455555555555555555544443321 11111 111222336677788888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc------cccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS------KRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
|.+.... .+-|+...+.+--.....+.+.+|...|+..... ....+..+++.+-.+|.+.+..++|+..+++.
T Consensus 403 f~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 8876643 1345667777777777789999999999876521 11235667888999999999999999999986
Q ss_pred hc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 162 SE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 162 ~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
.. ..+..++.++--.|...|+++.|...|++-. .+.|+..+-..++..+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 55 5556689999999999999999999998755 46799888888887654
No 90
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00011 Score=60.80 Aligned_cols=199 Identities=11% Similarity=0.060 Sum_probs=145.7
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~ 82 (275)
.|....+-++....|+.....+.. |..+|..=-....-.+++++|..=|++..+ +.|. +..|.-+.-+..|.+.++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHH
Confidence 577788888999999998876654 555555555555556789999999999887 4454 456777777778899999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-------ccccHHhHHHHHHHHHhccchHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-------RSMCKALHEKILHILISGKLLKDAY 155 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~ 155 (275)
.+...|++.++. ++--+..|+..-..+...+++++|.+.|+....-- +.+.+.+.-.++..- =.+++..|+
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~ 523 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHH
Confidence 999999999875 45556789999999999999999999999765321 122222222222221 248899999
Q ss_pred HHHHHhhcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 023915 156 VVVKDNSES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARY 212 (275)
Q Consensus 156 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 212 (275)
+++++..+. ...-.|.+|...-...|++++|+++|+.-... ..|-.-++++|
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~ 577 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAY 577 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHH
Confidence 999987762 23337899999999999999999999875542 23444455554
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=0.00011 Score=55.31 Aligned_cols=147 Identities=7% Similarity=-0.026 Sum_probs=101.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -+.|...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHH
Confidence 467788888887555433221 11 0 122356667777777666553 2355667888888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHH-hccCC--HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHL-GKMRA--HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
.|...|++..+.. +-+...+..+-.++ ...|+ .++|.+++++....... +...+..+-..+...|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888754 33556677776653 56676 48899999888766554 33466777778888999999999999
Q ss_pred HhhcC
Q 023915 160 DNSES 164 (275)
Q Consensus 160 ~~~~~ 164 (275)
++.+.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 88763
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00036 Score=64.48 Aligned_cols=212 Identities=12% Similarity=0.038 Sum_probs=161.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhc-CCCC---cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC
Q 023915 4 AFCRGGCFEEAKQLAGDFEAK-YDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 79 (275)
...+.++++.|.+++++.... ++.- -...|.++++.--.-|.-+...++|++..+- .-....|..|...|.+..
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSE 1544 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhh
Confidence 455678999999999988752 2221 1245777777766678888899999999873 233456889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccc-ccHHhHHHHHHHHHhccchHHHHHHH
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS-MCKALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
..+.|.++++.|.+.- .-....|...++.+.+.++-+.|.+++.+..+.-+. -...........-.+.|+.+.+..+|
T Consensus 1545 k~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred cchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHH
Confidence 9999999999998753 355678999999999999999999999987654332 12223444555556799999999999
Q ss_pred HHhhcCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHHhchhH
Q 023915 159 KDNSESI--SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ--GIFHIAIARYIAEREKK 219 (275)
Q Consensus 159 ~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~y~~li~~~~~~~~~~ 219 (275)
+.....- ..+.|+.+|+.=.++|+.+.+..+|+.....++.|-. ..|...+. |=.+.|+-
T Consensus 1624 Egll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe-yEk~~Gde 1687 (1710)
T KOG1070|consen 1624 EGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE-YEKSHGDE 1687 (1710)
T ss_pred HHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH-HHHhcCch
Confidence 9877633 4568999999999999999999999999999887764 35666664 33343443
No 93
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.25 E-value=0.0021 Score=57.63 Aligned_cols=184 Identities=9% Similarity=0.031 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQ--PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 143 (275)
...+.|.+.|.-.|++..+.++...+...... .-...|-.+-.+|...|++++|...|.+-.+....-....+--+.+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 34566777777788888888888887754311 1223577788888888999999988887665433332223445788
Q ss_pred HHHhccchHHHHHHHHHhhcC-CC-hhHHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhch
Q 023915 144 ILISGKLLKDAYVVVKDNSES-IS-HPAIKKFASAFVRLG----NINLVNDVMKAIHATGYRIDQGIFHIAIARYIAERE 217 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~ 217 (275)
.+.+.|+++.+...|+..... ++ ..+...+-..|...+ ..+.|..++....+.- +-|...|-.+-..+- . +
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~-~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-Q-T 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-h-c
Confidence 888899999998888887652 22 235555555566554 4456666655544432 234556665555542 3 3
Q ss_pred hHHHHHHHHH----HHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 218 KKELLLKLLE----WMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 218 ~~~~a~~l~~----~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
+....+..|. .|...+-.+-....|.+-......|
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 3333344444 3344555566666777766666666
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.0007 Score=61.35 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=27.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (275)
-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+-..|... ++++|.+++..
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 334444444455555555555555443 33344455555555555 55555555444
No 95
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00019 Score=54.77 Aligned_cols=171 Identities=11% Similarity=0.102 Sum_probs=114.3
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
++.+.+...-..-+......-...|+..|++++|++..... -+......=...+.+..+.|.|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 34444444433434344444455688999999999987762 12222333344567788899999999999863
Q ss_pred CCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhH
Q 023915 96 HQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPA 169 (275)
Q Consensus 96 ~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 169 (275)
-+..|.+-|..++.+ .+....|.-+|++|.+ ...|++.+.+-...++...+++++|..++++... ...|.+
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 344566666666654 4668999999999974 3566666788888888899999999999998765 444555
Q ss_pred HHHHH-HHHHhcCChhHHHHHHHHHHHc
Q 023915 170 IKKFA-SAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 170 ~~~li-~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
...+| .+.-...+.+-..+.+.+++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 54444 4444444555666677777664
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00042 Score=52.79 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=105.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcc
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (275)
..+=..+...|+-+....+....... -.-|....+..+....+.|++..|...+++..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44455566667777776665553321 12233344557778888888888888888876543 66777888888888888
Q ss_pred CCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHhcCChhHHHHHH
Q 023915 114 RAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS--HPAIKKFASAFVRLGNINLVNDVM 190 (275)
Q Consensus 114 g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~ 190 (275)
|+++.|..-|.+..+- +-.| ...+.+--.+.-.|+.+.|..++......+. +..-..+.-.....|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888887776643 2222 3467777777778888888888877655433 335567777778888888888876
Q ss_pred HH
Q 023915 191 KA 192 (275)
Q Consensus 191 ~~ 192 (275)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00023 Score=58.79 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=106.4
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH-ILIKYFCKEKMYILAYRTMVDMHRKGHQPE-EELCSSLI 107 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li 107 (275)
..-|..-+..| ..|++++|+..++.+.. -.||..-|. .....+.+.++..+|.+.++.+... .|+ ....-.+-
T Consensus 307 aa~YG~A~~~~-~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTY-LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHH-HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHH
Confidence 33455555443 56788888888888765 335555444 5556777888888888888887765 455 44556677
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHH
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVN 187 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 187 (275)
.+|.+.|++.+|..+++..... .+-++..|..+-++|...|+..++..-..+ .|...|+++.|.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~ 445 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAI 445 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHH
Confidence 7788888888888888776543 334556788888888888888877776666 345567788888
Q ss_pred HHHHHHHHcC--CCCChhhHHHHHHH
Q 023915 188 DVMKAIHATG--YRIDQGIFHIAIAR 211 (275)
Q Consensus 188 ~~~~~m~~~g--~~p~~~~y~~li~~ 211 (275)
..+...++.. -.|+-.=+...|..
T Consensus 446 ~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 446 IFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 7777666642 12333334445544
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.19 E-value=0.00024 Score=50.52 Aligned_cols=95 Identities=13% Similarity=-0.046 Sum_probs=69.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
+..+-.++...|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+.. +.+..++..+-.++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4456667777888888888888876632 2355667777778888888888888888887643 4456677777778888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 023915 113 MRAHSEALSVYNMLRYS 129 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~~~ 129 (275)
.|+.++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888876543
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00022 Score=61.69 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=130.1
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+...|-+..|..+|+.+. .|.-+|.+|+..|+..+|..+..+-.+ -+||...|..+.+......-++
T Consensus 406 ell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 34566777888888877664 366778888888888888888777666 5588888888888877777777
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+|..+++..... +-..+-....+.++++++.+.|+.-..- ... ..+|-..-.+..+.+++..|.+-|..-
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 777777765432 1111111122356777777776643322 222 234545555555667777777777664
Q ss_pred hc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 162 SE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 162 ~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
.. ......||.+-.+|.+.++-.+|...+++..+.+..| -..|..-+.... .-|.+++|++.+.+|..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsv-dvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSV-DVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ceeeechhhhhh-hcccHHHHHHHHHHHHH
Confidence 44 2233377777777888877777777777776665332 223322222223 56777777777776654
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.17 E-value=0.00014 Score=63.24 Aligned_cols=137 Identities=17% Similarity=0.205 Sum_probs=82.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
.+......|.+|+.+++.+... +.-..-|.-+-+-|+..|+++.|.++|.+.- .|+-.|..|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 3445566777777777777654 2123346667777888888888888876532 3667778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
.|.++-.+.. |-......|-+-..-.-+.|++.+|.++|-.+. .| ...|.+|-+.|..++.+++..+.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p-----~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP-----DKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc-----hHHHHHHHhhCcchHHHHHHHHh
Confidence 8877766543 333444455555555555666666655543221 11 23455666666666666665543
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.00071 Score=60.33 Aligned_cols=132 Identities=9% Similarity=-0.017 Sum_probs=109.9
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE-EELCS 104 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~ 104 (275)
..++..+-.|-....+.|..++|..+++...+ +.||.. ....+...+.+.+++++|+...++..+. .|+ .....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 34678888888999999999999999999988 668865 4567788899999999999999999876 454 45667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
.+-.++.+.|++++|..+|++.... .+-+..++..+-..+-..|+.++|...|++..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888889999999999999999873 333466788888888999999999999998765
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=8.2e-05 Score=61.42 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=84.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (275)
.-.+|+..+...++++.|.++|+++.+.. |+. ...+++.+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666666777888888888887754 553 3346666666777777888877777442 334555555666677
Q ss_pred ccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 112 KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
+.++.+.|+++.++.....+. +-.+|..|..+|...|+++.|+..+..+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 788888888888877644222 233677788888888888888877776543
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0019 Score=49.54 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=113.7
Q ss_pred CCChhhHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH
Q 023915 62 SPDYNTFHILIKYFCKEKMYIL-AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK 140 (275)
Q Consensus 62 ~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 140 (275)
.|....+..+-......++.+. ..++.+.+.......+...-..-...|++.|++++|++...... +......
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al 142 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAAL 142 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHH
Confidence 3444444444444444444443 33344445444444443333344455788888999888876621 1223334
Q ss_pred HHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc
Q 023915 141 ILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER 216 (275)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~ 216 (275)
=+..+.+..+.+.|.+.+++|.+.-...+.+-|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-..-... ..
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l-~~ 220 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHL-QL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHH-Hh
Confidence 455666778888888888888887776677666555544 4578888888888876 35677777777766554 66
Q ss_pred hhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 217 EKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 217 ~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
+++++|..++++.....- -+..|...+|-.-...|
T Consensus 221 ~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDA-KDPETLANLIVLALHLG 255 (299)
T ss_pred cCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhC
Confidence 888889998888876543 33555555555555555
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=0.00017 Score=50.60 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=71.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+......+...+...|++++|.+.|+...+.+ +.+...+..+...+.+.|+++.|...+++..+.+ +.+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33456666677778888888888888876643 2355666777777888888888888888876654 445566777777
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 023915 109 HLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~ 129 (275)
.|...|+.++|...|+.....
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888776654
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00065 Score=48.35 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=10.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 023915 73 KYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00083 Score=47.80 Aligned_cols=124 Identities=7% Similarity=0.020 Sum_probs=85.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc--HHhHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC--KALHEKI 141 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l 141 (275)
.|..++..+ ..++.+.+...++.+.+.. +.+ ....-.+-..+...|++++|...|+........+. ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344555555 4788888888888887653 222 12333455677888999999999998887653332 2234456
Q ss_pred HHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCChhHHHHHHHH
Q 023915 142 LHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
-..+...|++++|+..++........+ .+...-..|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777888999999999997755444444 445566888999999999988865
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0021 Score=54.55 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=84.4
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH--HccC
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF--CKEK 79 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~--~~~~ 79 (275)
++-+.+.|++++|.+....+...+.. +...+..=+-+..+.+++++|+.+.+.-.. ...+..-+ +=.+| .+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHcc
Confidence 45677899999999999999987633 556677777788999999999966543221 11111111 23344 4789
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 023915 80 MYILAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 131 (275)
..|.|+..++ |..++. .+...--..+-+.|++++|+.+|+.+..++.
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999999888 444433 3555566678889999999999999976543
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.02 E-value=0.00018 Score=50.42 Aligned_cols=100 Identities=12% Similarity=0.005 Sum_probs=81.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|.+.|+.....+.. +...+..+-..+.+.|++++|...|+...+.+ +.+...+..+...+...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 4567889999999999999886543 77888999999999999999999999887753 345667778888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
.|...|+...+. .|+...+..+
T Consensus 103 ~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 103 SALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHHHHHHh--ccccchHHHH
Confidence 999999998875 4655554433
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.00096 Score=50.16 Aligned_cols=125 Identities=10% Similarity=-0.022 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH-Hhccc--hHHH
Q 023915 78 EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL-ISGKL--LKDA 154 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 154 (275)
.++.+++...++...+.. +.|...|..+-..|...|++++|...|+........ +...+..+-.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555566666666655543 455667777777777777888877777776654332 333444444443 45555 4777
Q ss_pred HHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 155 YVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 155 ~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
.+++++... ..++..+..+...+...|++++|...|+.+.+.. .|+..-+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 777777655 2233356666667777777777777777776643 3444333
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.0012 Score=54.75 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=97.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
-.+|+..+...++++.|..+|+++.+.. |+. ...+...+...++-.+|.+++++....... +......-.+.|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3566677777899999999999999764 654 445788888888999999999988754332 34455666677889
Q ss_pred ccchHHHHHHHHHhhcCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 148 GKLLKDAYVVVKDNSESISH--PAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
.++.+.|+.+.++.....+. .+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999998873332 388999999999999999999998765
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=0.0076 Score=53.98 Aligned_cols=145 Identities=8% Similarity=-0.046 Sum_probs=115.2
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHH
Q 023915 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE 139 (275)
Q Consensus 61 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 139 (275)
...+...+-.|.....+.|.+++|+.+++...+. .|+. .....+...+.+.+++++|+...++.....+. +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 4455778888889999999999999999999875 6764 47778999999999999999999988755433 444667
Q ss_pred HHHHHHHhccchHHHHHHHHHhhc-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 023915 140 KILHILISGKLLKDAYVVVKDNSE-SIS-HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAI 209 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li 209 (275)
.+-.++...|++++|..+|++... .+. +..+..+-..+...|+.++|...|+...+. ..|....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 778888999999999999999885 322 347788888999999999999999987774 234555555444
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.00022 Score=61.66 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=129.2
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 80 (275)
+|..|+..|+..+|..+..+..+. +||...|..+.+......-+++|.++++....+ .-..+-....+.++
T Consensus 430 vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence 366788999999999998877763 789999999999988888899999998775432 11111112233677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++.+.+.|+.-.+.. +....+|-.+-.+..+.++++.|.+.|..-... -+-....||.+-.+|.+.++-.+|...+++
T Consensus 501 fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 501 FSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 888888777755432 334457777777777788888888888776532 222345688888888888888888888887
Q ss_pred hhcCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 161 NSESISH--PAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 161 ~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
..+.... ..+...+-.....|.+++|.+.+..+..
T Consensus 579 AlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6653222 2455666667778888888888877655
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.98 E-value=0.0057 Score=57.20 Aligned_cols=228 Identities=12% Similarity=-0.023 Sum_probs=143.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhc----CC-CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCC--C-ChhhHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAK----YD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AIS--P-DYNTFHIL 71 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~t~~~l 71 (275)
.+...|++++|...+++.... |. .+-..+++.+-..+...|+++.|.+.+++.... +.. | ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 345689999999998887642 11 112235566667788899999999988876542 221 1 22334455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC--CCCC--HHhHHHHHHHHhccCCHHHHHHHHHHHHhc----cccccH-Hh-HHHH
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKG--HQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMCK-AL-HEKI 141 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g--~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~-~~~l 141 (275)
...+...|+++.|...+.+..... ..+. ...+..+...+...|+.+.|...+...... +..... .. ....
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 566777899999999988876431 1122 234445666777889999999988877542 111100 00 0112
Q ss_pred HHHHHhccchHHHHHHHHHhhcCCChhH------HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCh-hhHHHHHH
Q 023915 142 LHILISGKLLKDAYVVVKDNSESISHPA------IKKFASAFVRLGNINLVNDVMKAIHAT----GYRIDQ-GIFHIAIA 210 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~y~~li~ 210 (275)
+..+...|+.+.|..++........... ...+..++...|+.++|...+...... |..++. .+...+-.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2444557889999988877554211111 245667788999999999999886653 333322 24444444
Q ss_pred HHHHhchhHHHHHHHHHHHhhC
Q 023915 211 RYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 211 ~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
++. ..|+.++|...+.+..+.
T Consensus 740 a~~-~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYW-QQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHH-HcCCHHHHHHHHHHHHHH
Confidence 554 678888899998887654
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.97 E-value=0.00036 Score=49.62 Aligned_cols=94 Identities=6% Similarity=-0.138 Sum_probs=80.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+.+.|++++|...|+......+. +...|..+-.++.+.|++++|...|+.....+ +.+...+..+..++.+.|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 567889999999999999876544 78899999999999999999999999998742 3466778899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 023915 84 AYRTMVDMHRKGHQPEEE 101 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~ 101 (275)
|...|+...+. .|+..
T Consensus 111 Ai~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 111 AREAFQTAIKM--SYADA 126 (144)
T ss_pred HHHHHHHHHHh--CCCCh
Confidence 99999999875 45543
No 115
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0047 Score=49.46 Aligned_cols=149 Identities=9% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHH
Q 023915 46 MESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (275)
..-|.+.|+-.-+++..-|.. --.++.+.+.-..++|.++-.++.+...-..-|...| .+..+++..|...+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 334555554444444332222 2234444444455555555555555544322222222 25556666666666666665
Q ss_pred HHHhccccccHHhHHH-HHHHHHhccchHHHHHHHHHhhcCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 125 MLRYSKRSMCKALHEK-ILHILISGKLLKDAYVVVKDNSESISHPAI-KKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 125 ~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
.+....+.- ..+|.+ +-++|++++..+.|++++-++......-+. ..+.+-|.+++.+--|.+.|+.+...
T Consensus 418 ~is~~~ikn-~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 418 RISGPEIKN-KILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhcChhhhh-hHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 554333222 223433 445556666666666666554433322222 23345566666666666666665553
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.88 E-value=0.023 Score=53.22 Aligned_cols=249 Identities=13% Similarity=0.011 Sum_probs=153.3
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHccCCHHHHHHHHHHHhhc----C-CCCChhhHHHHHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDEL----A-ISPDYNTFHILIKYF 75 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~t~~~li~~~ 75 (275)
+...|++++|...+++....-...+. ...+.+-..+...|++++|...+++.... | ..+...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 45688999999999987653112121 34566666778899999999999887642 1 111123455666778
Q ss_pred HccCCHHHHHHHHHHHHH----cCCC--C-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc----cccccHHhHHHHHHH
Q 023915 76 CKEKMYILAYRTMVDMHR----KGHQ--P-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMCKALHEKILHI 144 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~ 144 (275)
...|+++.|...+++..+ .|.. + ....+..+...+...|++++|...+++.... +.......+..+-..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999888764 2221 1 2233445555667789999999998876542 211122344445566
Q ss_pred HHhccchHHHHHHHHHhhc----CCChhHH-----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHH
Q 023915 145 LISGKLLKDAYVVVKDNSE----SISHPAI-----KKFASAFVRLGNINLVNDVMKAIHATGYRIDQG---IFHIAIARY 212 (275)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~----~~~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~ 212 (275)
....|+.+.|...+..... ......+ ...+..+...|+.+.|...+............. .+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7789999999998887643 1111111 112244556889999999876654321111111 123344444
Q ss_pred HHhchhHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHHhhHH
Q 023915 213 IAEREKKELLLKLLEWMTGQ----GYVVD-SSTRNLILKNSHLFGRQ 254 (275)
Q Consensus 213 ~~~~~~~~~a~~l~~~m~~~----~~~p~-~~t~~~li~~~~~~g~~ 254 (275)
. ..|+.++|..++++.... |..++ ..+...+-.++.+.|+.
T Consensus 702 ~-~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 702 I-LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred H-HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 4 568888899988887543 33332 24455555666777743
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.0052 Score=51.10 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=134.5
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
.|+...+...+.+......-..+-.++.+-.+.+ -...-|..-+ .+...|.++.|+..++.+... .+-|+.-....
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 4566777888877665554444444443333311 1122243333 455779999999999998865 23455566678
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChh
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNIN 184 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 184 (275)
.+.+.+.++.++|.+.++.+....+.- ....-.+-.+|.+.|+..+|..+++.... ..++..|..|..+|...|+..
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 888999999999999999988654332 44667788899999999999999998655 445568999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHH
Q 023915 185 LVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG--YVVDSSTRNLILKNSH 249 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~--~~p~~~t~~~li~~~~ 249 (275)
++..-..+.. . ..|++++|...+....+.. -.|+-.=+...|....
T Consensus 426 ~a~~A~AE~~------------------~-~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 426 EALLARAEGY------------------A-LAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHHHH------------------H-hCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 9887765542 2 3466666666666655432 2344444444444443
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=6.6e-05 Score=47.95 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=42.5
Q ss_pred cCcHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~ 85 (275)
.|+++.|+.+++.+.+.... |+...+-.+-.++.+.|++++|+++++. .+ ..|+. ...-.+..++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666665331 2333444466666666666666666666 21 22222 22223355566666666666
Q ss_pred HHHHH
Q 023915 86 RTMVD 90 (275)
Q Consensus 86 ~~~~~ 90 (275)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00048 Score=44.15 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=50.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
+..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344455555666666666666655421 1122445555555666666666666666655543 2233455555566666
Q ss_pred cCCHHHHHHHHHHHH
Q 023915 113 MRAHSEALSVYNMLR 127 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~ 127 (275)
.|+.+.|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666655543
No 120
>PLN02789 farnesyltranstransferase
Probab=97.83 E-value=0.011 Score=47.95 Aligned_cols=205 Identities=9% Similarity=-0.041 Sum_probs=126.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC--
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-- 80 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-- 80 (275)
.+...++.++|+.+.+++....+. +..+|+.--.++...| +++++++.++++.+.+- -+..+|+.--..+.+.|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 345567788888888888876433 4456665555566666 57889999888877432 223345544444445554
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc---cch----HH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG---KLL----KD 153 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~----~~ 153 (275)
.+.++.+++.+.+.. +-|..+|+....++.+.|+++++++.++.+....+.... .|+..-..+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-AW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-AWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-HHHHHHHHHHhccccccccccHHH
Confidence 366788888887653 446678888888888888999999999988776544333 454444344333 222 34
Q ss_pred HHHHHHHhhc-CC-ChhHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 154 AYVVVKDNSE-SI-SHPAIKKFASAFVRL----GNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 154 a~~~~~~~~~-~~-~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
.++...+... .+ +...|+-+...+... ++..+|...+.+....+ ..+......|++.|+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 5555544433 22 233555555555552 33455777776655533 235567777888876
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.81 E-value=0.018 Score=51.50 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=73.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHH--HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCA--YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
.....+++..|++..+.+.+. .||. .|..++.+ ..+.|+.++|..+++....-+.. |..|..++-..|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345567788888888777764 3332 23333333 34678888888777776654443 777788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHH
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (275)
++|..+|++.... -|+......+..+|.|.+.+.+
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 8888888887643 5666666667777777766644
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0097 Score=46.64 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=142.0
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI-LIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-li~~~~~~~~~ 81 (275)
..+.+..++++|++++....+...+ +....+.|-.+|-...++..|-+.++++.. .-|...-|.. -...+.+.+.+
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhccc
Confidence 4457788899999998887776433 778888999999999999999888888876 4465554431 22344455555
Q ss_pred HHHHHHHHHHHHc------------------CC----------CC---CHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 82 ILAYRTMVDMHRK------------------GH----------QP---EEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 82 ~~a~~~~~~m~~~------------------g~----------~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
..|+++...|.+. +- .| +..+.+..-....+.|+++.|.+-|+...+-+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 5555555555331 00 01 11122222222346788888888888776654
Q ss_pred ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh----------------h--------HHHHH-------HHHHHh
Q 023915 131 RSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH----------------P--------AIKKF-------ASAFVR 179 (275)
Q Consensus 131 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------------~--------~~~~l-------i~~~~~ 179 (275)
.--+...|+..+.-| +.|+.+.|++...++.+.+.. . ....+ ...+.+
T Consensus 175 GyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred CCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 333444677666544 456778888877765432110 0 11222 234556
Q ss_pred cCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 180 LGNINLVNDVMKAIHAT-GYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 180 ~~~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
.|+++.|.+-+-.|... .-..|+.|.+.+.-. ...+++-+..+-+.-+.... +-...||..++-.|||..
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALM--NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHh--cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 78888888887777654 234455666554432 12333333444344333321 223467777777777776
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.001 Score=45.29 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=57.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHhHHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHRKGH--QPEEELCSS 105 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ 105 (275)
++-.+...+.+.|++++|.+.|..+.+.. |+ ...+..+...+.+.|+++.|...|+.+....- +.....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34455556666677777777776666532 22 23444566667777777777777777665321 111344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 106 LIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
+..++.+.|+.+.|...++++....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6666666777777777777666553
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0092 Score=45.70 Aligned_cols=158 Identities=8% Similarity=-0.107 Sum_probs=117.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
..+-..+.-.|+-+....+....... ..-|............+.|++..|...+++... .-+++...|+.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence 55556677778877777777665432 234445566688889999999999999998874 4556777899999999999
Q ss_pred cchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHH
Q 023915 149 KLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLL 226 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~ 226 (275)
|+.++|..-|.+..+ ...+..+|.+.-.|.-.|+.+.|..++......+-. |...-..+..... ..|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~-~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVG-LQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHh-hcCChHHHHhhc
Confidence 999999999988766 344457788989999999999999999887775432 4444455554543 678899888877
Q ss_pred HHHh
Q 023915 227 EWMT 230 (275)
Q Consensus 227 ~~m~ 230 (275)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6543
No 125
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.77 E-value=0.022 Score=49.46 Aligned_cols=250 Identities=8% Similarity=-0.072 Sum_probs=103.8
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
-+.|..--+..+.......|+.-. ..||+.--..|.+.+.++-|..+|....+- ++-+...|......=-..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 334444444455444444443211 134444444555555555555555444431 11122333333333333344444
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
...+|++.... ++-....|-....-+-..|+...|..++...-+.... +...|-+.+..-..+..++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 44444444432 1112223333333334444444444444443333222 333444444444444444444444444332
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH--------------------------------cCCCCChhhHHHHHH
Q 023915 164 -SISHPAIKKFASAFVRLGNINLVNDVMKAIHA--------------------------------TGYRIDQGIFHIAIA 210 (275)
Q Consensus 164 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------------------------~g~~p~~~~y~~li~ 210 (275)
.++...|..-++.-.-.++.++|.+++++..+ ....|+......++.
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 22222333323333333333333333322211 112344444444443
Q ss_pred HHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHH
Q 023915 211 RYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADI 259 (275)
Q Consensus 211 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~ 259 (275)
-+=.+.|..-.|..++++-.-.+ +-|...|-..|+.=.+.|....++.
T Consensus 727 kleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 33323344555666666554332 3356667777777777774444443
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.75 E-value=0.011 Score=50.04 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHH
Q 023915 46 MESVMHVMRKLDEL-AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVY 123 (275)
Q Consensus 46 ~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 123 (275)
.+...+.++++... .+.|+ .+|...++...+..-+..|..+|.+.++.+..+ .+..++++|.-||. ++...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55566666666653 23444 368888888888888999999999999888877 77788888888875 7888899999
Q ss_pred HHHHhc-cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 124 NMLRYS-KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH-----PAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 124 ~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
+.=... |.. +.--...++-+...++-..+..+|+.......+ +.|..+|..=..-|++..+.++-+.+..
T Consensus 425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 854433 332 234456777888888888899999987775333 4788888888888998888888777654
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0016 Score=44.27 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=39.9
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHcc
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKE 78 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~ 78 (275)
+.+.|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.|+...... |+ ...+..+...+.+.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHHHHHh
Confidence 34445555555555555443211 012234444555555555555555555544321 22 22334444444555
Q ss_pred CCHHHHHHHHHHHHHc
Q 023915 79 KMYILAYRTMVDMHRK 94 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~ 94 (275)
|+++.|...++++.+.
T Consensus 90 ~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 90 GDKEKAKATLQQVIKR 105 (119)
T ss_pred CChHHHHHHHHHHHHH
Confidence 5555555555555444
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0093 Score=50.63 Aligned_cols=242 Identities=7% Similarity=0.009 Sum_probs=172.4
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~ 83 (275)
+.+.|++.+|.-.|+.....++. +...|--|-..-...++-..|+..+.+..+ +.|+- ...-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 57889999999999999888655 778999999999999999999999999887 55764 456677778888888888
Q ss_pred HHHHHHHHHHcCCC--------CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHH
Q 023915 84 AYRTMVDMHRKGHQ--------PEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 84 a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
|+..+..=+....+ ++...-.. ..+.....+....++|-++... +..+++.++..|---|--.|.++.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888776543211 01000000 2233334455566666666544 5457888888888888889999999
Q ss_pred HHHHHHhhcC-C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 155 YVVVKDNSES-I-SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG--IFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 155 ~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
.+.|+..... | +...||.|-..++...+.++|..-|++..+ ++|+.+ =||.-|. |. ..|.+++|.+.|-+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS-~m-NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGIS-CM-NLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhh-hh-hhhhHHHHHHHHHHHH
Confidence 9999987663 2 333899999999999999999999998887 467653 5777774 45 7799999888776543
Q ss_pred ---hCCC------CCChhhHHHHHHHHHHhhHHH
Q 023915 231 ---GQGY------VVDSSTRNLILKNSHLFGRQL 255 (275)
Q Consensus 231 ---~~~~------~p~~~t~~~li~~~~~~g~~~ 255 (275)
..+- .++...|..|=.++.-.++.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 3321 223445555555555555444
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.70 E-value=0.027 Score=48.63 Aligned_cols=200 Identities=17% Similarity=0.089 Sum_probs=138.4
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~ 83 (275)
++..|+.++|.+....-.+.++. +.++|+++--.+-...++++|+..|..... +.|| ...+.-+--.-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhh
Confidence 34567778888887777665555 778888888877778888888888888766 3354 3445544444566777887
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-ccccHHhHHHHH------HHHHhccchHHHH
Q 023915 84 AYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSMCKALHEKIL------HILISGKLLKDAY 155 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~ 155 (275)
......+..+. .|+ ...|..+.-++.-.|+...|.+++++..+.. -.|+...|.... ....+.|..++|.
T Consensus 128 ~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 128 YLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 77777777654 344 3467778888888899999999999988764 355555554332 3345677888888
Q ss_pred HHHHHhhcCC-ChhHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 156 VVVKDNSESI-SHPAI-KKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 156 ~~~~~~~~~~-~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
+.+.+..... +...+ .+-...+.+.+++++|..++..+...+ ||..-|...+..
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 8777654422 22222 345677888899999999999988864 777766555544
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0023 Score=46.74 Aligned_cols=113 Identities=6% Similarity=-0.045 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHH-hcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHccCCHHHHHHH
Q 023915 11 FEEAKQLAGDFE-AKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP--DYNTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 11 ~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~ 87 (275)
+..+.+.+..+. ..+..-....|..+...+...|++++|+..|+......-.| ...++..+-..+...|+++.|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555553 33333345566777777778888888888888876543222 134677777888888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHh-------ccCCHHHHHHHHH
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLG-------KMRAHSEALSVYN 124 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~ 124 (275)
++...... +....++..+...+. +.|+++.|...++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 88877542 222334555555555 4555554444443
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=0.00036 Score=42.39 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=45.8
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI 72 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 72 (275)
.+.|++++|.++|+.+....+. +...+-.+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4678888888888888776544 6667777888888888888888888887763 36655554443
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.041 Score=49.35 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=110.3
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
..+.|+.++|..+++....-+.. |..|..++-.+|-..++.++|..+|+...+ .-|+......+..+|.|.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888777777665555 777788888888888888888888877765 447766677777777777777654
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCC----------HHHHHHHHHHHHhcc-ccccHHhHHHHHHHHHhccchHH
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRA----------HSEALSVYNMLRYSK-RSMCKALHEKILHILISGKLLKD 153 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~ 153 (275)
-++--+|-+ .++-+...|-+++......-. ..-|.+.++.+...+ ..-+..-...-...+-..+.+++
T Consensus 130 Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 444333333 233344555566655544321 122444444444433 11122222222334445666777
Q ss_pred HHHHHH-HhhcCCChh---HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 154 AYVVVK-DNSESISHP---AIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 154 a~~~~~-~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
|++++. ...+...+. .-+.-+..+...++|.+..++-.++...|
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 777773 333322222 22345666777777777777777766655
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.011 Score=47.51 Aligned_cols=192 Identities=10% Similarity=0.010 Sum_probs=126.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-----HHccCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHH
Q 023915 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-----FCKEKMYILAYRTMVDMHRKGHQPEEE-LCSSLIF 108 (275)
Q Consensus 35 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~ 108 (275)
.|+--|.+++++.+|..+..++.- ..|-......+..+ ......+.-|.+.|+-.-.++..-|.. --.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 455567899999999998766532 22322222222221 222234556777777776666655443 3345556
Q ss_pred HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--CChhHHH-HHHHHHHhcCChhH
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES--ISHPAIK-KFASAFVRLGNINL 185 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~-~li~~~~~~~~~~~ 185 (275)
++.-..++++++-.++.++.--...+. .--.+-++.+..|.+.+|+++|-.+... .+..+|- .+.+.|.++++++.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 666677889999888888755443333 2234788999999999999999887653 3344665 45678999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 186 VNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 186 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
|+.++-.+ +-..+..+.-.+|.--|-+.+.+--|-+.|++++..
T Consensus 447 AW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 447 AWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 98886444 334455666666665565778877788888888764
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0022 Score=52.96 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=80.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~ 82 (275)
.+...|++++|++.|++..+.... +...|..+-.+|.+.|++++|+..++...+. .| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 356789999999999999987554 6778888889999999999999999999874 45 4557888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
.|...|++..+. .|+.......+
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999998875 45544444443
No 135
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0022 Score=40.95 Aligned_cols=92 Identities=12% Similarity=-0.055 Sum_probs=49.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|.+.++......... ...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 3445555666677777777777665542 2233455556666666666666666666655432221 1344444455555
Q ss_pred ccchHHHHHHHHHh
Q 023915 148 GKLLKDAYVVVKDN 161 (275)
Q Consensus 148 ~~~~~~a~~~~~~~ 161 (275)
.|+.+.|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 55555555555443
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.021 Score=44.45 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=34.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 173 FASAFVRLGNINLVNDVMKAIHAT--GYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 173 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
+.+.|.+.|.+..|..-++.+.+. +-+........++.+|. ..|..++|......+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~-~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR-QLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH-HcCChHHHHHHHHHHh
Confidence 345566777777777777776664 33333445556666664 5566666666655443
No 137
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00031 Score=44.81 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=7.5
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 023915 72 IKYFCKEKMYILAYRTMVD 90 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~ 90 (275)
..++.+.|++++|..+++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333334444444333333
No 138
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.032 Score=45.84 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=81.6
Q ss_pred hhhcCcHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh----HHHHHH------
Q 023915 5 FCRGGCFEEAKQLAGDFEAKY-DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT----FHILIK------ 73 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~li~------ 73 (275)
.+-.++...|.+.+-.+.... +.-|+.....+-..+...|+.++|+..|++... +.|+..+ |..|+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHh
Confidence 344455555555555444433 333556677777778888888888877777655 3343322 222221
Q ss_pred -------------------------HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 74 -------------------------YFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 74 -------------------------~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
.....++++.|+.+-+..++.. +.+...|-.=-.++...|++++|.--|+....
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 1112234444444444444321 12223333333445566777777777776543
Q ss_pred ccccccHHhHHHHHHHHHhccchHHHHHHHH
Q 023915 129 SKRSMCKALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 129 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
- .+.....|.-++.+|...|++.+|..+-+
T Consensus 363 L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 363 L-APYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred c-chhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 2 12344567778888887777777654443
No 139
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0073 Score=48.10 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=53.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKG-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 145 (275)
+|..+++..-+.+..+.|..+|.+.++.+ ...++....++|..++ .++.+.|.++|+...+. ...+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554322 1122222222222211 23344455555544422 222333444444555
Q ss_pred HhccchHHHHHHHHHhhcCC-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 146 ISGKLLKDAYVVVKDNSESI-----SHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
...++.+.|..+|+...... ....|..++..=.+.|+++.+..+.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555443321 122455555555555555555555555554
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.54 E-value=0.031 Score=51.13 Aligned_cols=176 Identities=10% Similarity=0.060 Sum_probs=110.2
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
+....++..+..+.+.|...+- +...+-.+-.+|-+.|+.++|..+|+++.+.. +-|....|.+...|+.. ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 3344455444444555554322 44577888889999999999999999999866 45677889999999999 99999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
.+++.+.... |...+++..+.++|..+....+.--. .+..+++..... ....
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d-~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFD-FFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccch-HHHHHHHHHHhh------------hccc
Confidence 9999987765 66667888888888887754322111 111111111111 0111
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 165 ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 165 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
....++-.+-..|....+|+++..+++.+.+.. +-|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 112233444556666667777777777766643 124445555665553
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0041 Score=49.54 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=80.8
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
.+|..+|...-+.+..+.|..+|.+.++.+ +...+....+++. +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777777888887777432 2233323233332 22345666678888777654 45556667777777
Q ss_pred HhccCCHHHHHHHHHHHHhc-cccc-cHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 110 LGKMRAHSEALSVYNMLRYS-KRSM-CKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
+.+.|+.+.|..+|+..... .... ....|...++-=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888776644 1122 234777777777777777777777776655
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.54 E-value=0.0071 Score=53.09 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=57.2
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHH
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVN 187 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 187 (275)
.+-.....+.+|+.+++.++..+... .-|-.+-+-|+..|+++.|.++|.+. ..++-.|..|.+.|+|++|.
T Consensus 740 eaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEA------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhc------chhHHHHHHHhccccHHHHH
Confidence 34445566666666666655433222 23555666667777777777766652 23455666777777777776
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHH
Q 023915 188 DVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLL 226 (275)
Q Consensus 188 ~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~ 226 (275)
++-.+. .|-......|-+-..-+ ...|++.+|.++|
T Consensus 812 kla~e~--~~~e~t~~~yiakaedl-dehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDL-DEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhH-Hhhcchhhhhhee
Confidence 665332 23222333343333332 2345555555554
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.014 Score=51.98 Aligned_cols=83 Identities=8% Similarity=0.024 Sum_probs=56.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc-C--------CCCChhhHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-A--------ISPDYNTFHILIKY 74 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~t~~~li~~ 74 (275)
.|...|+.+.|.+-.+.++ +...|..+-+.|.+..+.|-|.-.+..|... | -.|+ .+=..+.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4667899999998887776 6678999999999999988888777777542 2 1232 222222233
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 023915 75 FCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~ 93 (275)
....|.+++|+.+|.+.++
T Consensus 810 AieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4566777777777776654
No 144
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.042 Score=46.01 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHH
Q 023915 43 TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (275)
.|++..|.++|+...+ ..|+...|++.|+.=.+-+.++.|..+++...-. .|++.+|-.....=.++|....+.++
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4555555555555444 4466666666666656666666666666655432 35555555555555555655555555
Q ss_pred HHHHHhc--cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh----hHHHHHHHHHHhcCChhHHHHHH------
Q 023915 123 YNMLRYS--KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH----PAIKKFASAFVRLGNINLVNDVM------ 190 (275)
Q Consensus 123 ~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~------ 190 (275)
|...... .-......|.+.-.-=..++.++.|.-+|+-..+..+. ..|..+...=-+-|+....+.+.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 5544322 11111222222222222344455555555543332211 12333332222333333222221
Q ss_pred --HHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 191 --KAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 191 --~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
+.+... -+-|-.+|--.++.- ...|+.+...++|++... +++|
T Consensus 310 qYE~~v~~-np~nYDsWfdylrL~-e~~g~~~~Ire~yErAIa-nvpp 354 (677)
T KOG1915|consen 310 QYEKEVSK-NPYNYDSWFDYLRLE-ESVGDKDRIRETYERAIA-NVPP 354 (677)
T ss_pred HHHHHHHh-CCCCchHHHHHHHHH-HhcCCHHHHHHHHHHHHc-cCCc
Confidence 111111 123444555455432 345666777777777654 3444
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.51 E-value=0.029 Score=47.54 Aligned_cols=165 Identities=10% Similarity=0.068 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc-cHHhHHHHHHHHHhccchHHHHHHH
Q 023915 81 YILAYRTMVDMHRKG-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-CKALHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 158 (275)
.+.....++++...- ..|+ .+|..+|+.-.|..-+..|..+|.+....+..+ ...++++++.-+| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 445555666665433 3444 578889999999999999999999999988887 5556666776665 56778899999
Q ss_pred HH-hhcCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHHhchhHHHHHHHHHHHhhC--
Q 023915 159 KD-NSESISHPAI-KKFASAFVRLGNINLVNDVMKAIHATGYRIDQ--GIFHIAIARYIAEREKKELLLKLLEWMTGQ-- 232 (275)
Q Consensus 159 ~~-~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~y~~li~~~~~~~~~~~~a~~l~~~m~~~-- 232 (275)
+- +..-++.|.| ...+..+...++-..+..+|+.....++.||. ..|..+|.- =..-|+...+.++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y-ES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY-ESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhcc
Confidence 97 4456666655 78899999999999999999999998777665 589999964 45789999888888877542
Q ss_pred -CCCCChhhHHHHHHHH
Q 023915 233 -GYVVDSSTRNLILKNS 248 (275)
Q Consensus 233 -~~~p~~~t~~~li~~~ 248 (275)
...|...+-..+++-|
T Consensus 504 ~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRY 520 (656)
T ss_pred hhhcCCCChHHHHHHHH
Confidence 1333334445555554
No 146
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.49 E-value=0.0017 Score=44.68 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=55.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
|..++.++|.++++.|+.+....+++..- |+.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666666666666666666654332 22222110 0000 0112334567777777777
Q ss_pred HHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILI 146 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~ 146 (275)
+|+..|++..|+++.+.+... +++.+..+|..|++-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777766653 56666667776666544
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.015 Score=42.64 Aligned_cols=92 Identities=7% Similarity=-0.023 Sum_probs=66.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
....|..+...+...|++++|...|++..+.+-.|. ...+..+...+.+.|+++.|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677888888889999999999998876443222 3567888888999999999999999888642 2234566666
Q ss_pred HHHHhccCCHHHHHH
Q 023915 107 IFHLGKMRAHSEALS 121 (275)
Q Consensus 107 i~~~~~~g~~~~a~~ 121 (275)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776544443
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0082 Score=43.83 Aligned_cols=65 Identities=15% Similarity=0.001 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 65 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
...|..+...+...|+++.|+..|+........| ...++..+-..+...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456666677777788888888888877553222 1246777777778888888888888776644
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.031 Score=42.83 Aligned_cols=185 Identities=13% Similarity=0.098 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHHHhh---cC-CCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhccCCH
Q 023915 43 TGDMESVMHVMRKLDE---LA-ISPDYNT-FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE-LCSSLIFHLGKMRAH 116 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~---~g-~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~ 116 (275)
..+.++.++++.++.. .| ..|+..+ |..++-+....|+.+.|..+++++.+.- |... +-..----+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4567888888888763 34 6677765 5577777788888999999999988763 4332 211111123346888
Q ss_pred HHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 117 SEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 117 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
++|.++++.+.... +.+..++-.-+-..-..|+--+|++-+.+-.+ ..++..|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999888765 33445666666666666776677777776555 4566688889999999999999999999887
Q ss_pred HcCCCCChhh-HHHHHHHHHHh--chhHHHHHHHHHHHhhC
Q 023915 195 ATGYRIDQGI-FHIAIARYIAE--REKKELLLKLLEWMTGQ 232 (275)
Q Consensus 195 ~~g~~p~~~~-y~~li~~~~~~--~~~~~~a~~l~~~m~~~ 232 (275)
-. .|.... +..+-..+... ..+.+-+.++|.+-.+.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 74 465443 33444433323 23455677777776553
No 150
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.44 E-value=0.066 Score=46.51 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=108.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHh--hcCCCCC-------hhhHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD--ELAISPD-------YNTFHILI 72 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~-------~~t~~~li 72 (275)
-+.|.+.|.++.|.++|++.... ..++.-|+.+.++|++-..-.-+..+ + +. +.|-.-+ ..+|..++
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHHHHHHHHHHHH
Confidence 35678888888888888887764 44666777777777653322111111 0 10 0010001 11122222
Q ss_pred HH------------------------HHccCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHhccCCHHHHHHH
Q 023915 73 KY------------------------FCKEKMYILAYRTMVDMHRKGHQPEE------ELCSSLIFHLGKMRAHSEALSV 122 (275)
Q Consensus 73 ~~------------------------~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~ 122 (275)
+. -...|+..+...++.+..+. +.|.. ..|..+-+.|-..|+++.|..+
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 11 11235566666677776543 33321 3567778888889999999999
Q ss_pred HHHHHhcccccc---HHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh--------------------HHHHHHHHHHh
Q 023915 123 YNMLRYSKRSMC---KALHEKILHILISGKLLKDAYVVVKDNSESISHP--------------------AIKKFASAFVR 179 (275)
Q Consensus 123 ~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------~~~~li~~~~~ 179 (275)
|+.....+.+.- ..+|..--..=.+..+++.|+++++.....|.++ .|..++..--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 988765543332 3455555555566778888888888754432221 23334455556
Q ss_pred cCChhHHHHHHHHHHHcC
Q 023915 180 LGNINLVNDVMKAIHATG 197 (275)
Q Consensus 180 ~~~~~~a~~~~~~m~~~g 197 (275)
.|-++....+++.+.+..
T Consensus 490 ~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLR 507 (835)
T ss_pred hccHHHHHHHHHHHHHHh
Confidence 677777777777666543
No 151
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.054 Score=45.38 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=62.4
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
..|++..|.++|+.-.+ ..|+...|++.|.-=.+-..++.|..+|+...- +-|++.+|---...=-+.|....|.+
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 35888899999988775 489999999999999999999999999999876 44888877655555555555555555
Q ss_pred HHHHH
Q 023915 87 TMVDM 91 (275)
Q Consensus 87 ~~~~m 91 (275)
+|+..
T Consensus 229 VyerA 233 (677)
T KOG1915|consen 229 VYERA 233 (677)
T ss_pred HHHHH
Confidence 55444
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.021 Score=52.06 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=70.4
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 87 (275)
-+++++|.+.-+... ....|+.+-.+-.+.|.+.+|++-|-+. -|...|.-+++...+.|.+++-.+.
T Consensus 1088 i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 356677776654432 4567888888888888888887776443 3455677888888888888888777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHH
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (275)
+...++..-+|.+. +.||-+|++.+++.+..++
T Consensus 1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 77777666666543 4677888887777665554
No 153
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.42 E-value=0.0038 Score=43.01 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=67.2
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 80 (275)
+|.++++.|+++....+++..- |+.++... ..+. .-......|+..+..+++.+|+..++
T Consensus 8 ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~~ 67 (126)
T PF12921_consen 8 IIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHSFGYNGD 67 (126)
T ss_pred HHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHHHHhccc
Confidence 4678999999999999987654 44333200 0011 22345688999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHhHHHHHHHHhcc
Q 023915 81 YILAYRTMVDMH-RKGHQPEEELCSSLIFHLGKM 113 (275)
Q Consensus 81 ~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~ 113 (275)
+..|+++.+... ..+++.+..+|..|+.-....
T Consensus 68 i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 68 IFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999876 467777788888888765443
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00097 Score=40.07 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=33.4
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
.+.+.|++++|.+.|+.+.+..+. +...+..+-.++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666666665433 555666666666666666666666666654
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.016 Score=42.54 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 143 (275)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++........ ....+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3567777888899999999999999886543332 357888888899999999999999887764332 2334555555
Q ss_pred HHHhccchHH
Q 023915 144 ILISGKLLKD 153 (275)
Q Consensus 144 ~~~~~~~~~~ 153 (275)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 6666555433
No 156
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.011 Score=42.01 Aligned_cols=69 Identities=20% Similarity=0.125 Sum_probs=46.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh-----ccccccHHh
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKAL 137 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 137 (275)
...++..+...|+++.|..+.+.+.... +.|...|..+|.+|...|+...|.++|+.+.. -|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3455566667888888888888887653 55677888888888888888888888887753 266666543
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.0053 Score=43.63 Aligned_cols=96 Identities=6% Similarity=-0.133 Sum_probs=71.4
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT-FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
...-.+-..+...|++++|..+|+-+.. +.|.... |-.|--.+-..|++++|+..|....... +-|+..+-.+-.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344455556678899999999988877 4465554 4466666677789999999999888765 3456778888888
Q ss_pred HhccCCHHHHHHHHHHHHhc
Q 023915 110 LGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~ 129 (275)
+...|+.+.|.+.|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999988866543
No 158
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.33 E-value=0.0062 Score=47.31 Aligned_cols=87 Identities=11% Similarity=0.237 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHh----------------chhHHHHH
Q 023915 165 ISHPAIKKFASAFVR-----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAE----------------REKKELLL 223 (275)
Q Consensus 165 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~----------------~~~~~~a~ 223 (275)
.+..+|-+.+..+.. .++++-....++.|.+.|+.-|..+|+.||..+= + ..+-+-+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP-KgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP-KGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc-ccccccHHHHHHHHhhCchhhhHHH
Confidence 344456555555543 3677888888888999999999999999988752 2 22345588
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 224 KLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 224 ~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
+++++|+..|+.||..+-..|+.++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 99999999999999999999999999988
No 159
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.089 Score=45.19 Aligned_cols=127 Identities=12% Similarity=0.029 Sum_probs=71.5
Q ss_pred HHHHHHHhccchHHHHHHHH--------HhhcCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCChhhHHHH
Q 023915 140 KILHILISGKLLKDAYVVVK--------DNSESI-SHPAIKKFASAFVRLGNINLVNDVMKAIHAT--GYRIDQGIFHIA 208 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~--------~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~y~~l 208 (275)
..+......|+++.|.+++. .+.+.. .|.+..++...+.+.++-+.|..+++..... .-.+......++
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 34444455666666666666 333322 2235555566666666665555555543331 111122222222
Q ss_pred HH---HHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhccCCCCC
Q 023915 209 IA---RYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSKQHMKSK 268 (275)
Q Consensus 209 i~---~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~~~~~ 268 (275)
+. .|=-+.|+.++|..+++++.+. -++|..+...++.+|++...+. ++.+.+.+.|.+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~ek-a~~l~k~L~p~~ 521 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEK-AESLSKKLPPLK 521 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHH-HHHHhhcCCCcc
Confidence 22 2212458889999999999874 3688899999999998877433 444555555543
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.059 Score=43.04 Aligned_cols=179 Identities=8% Similarity=0.011 Sum_probs=94.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCCH--
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHR----KGHQPEE-- 100 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~~~-- 100 (275)
.|+..-..|-..+++++|.+.|....+. +-.. -...|......|.+. +++.|...+++..+ .| .|+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 3555555666677777777777665432 1111 112344444444443 77777777776653 23 2322
Q ss_pred HhHHHHHHHHhcc-CCHHHHHHHHHHHHhc----c-ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC-----Chh-
Q 023915 101 ELCSSLIFHLGKM-RAHSEALSVYNMLRYS----K-RSMCKALHEKILHILISGKLLKDAYVVVKDNSESI-----SHP- 168 (275)
Q Consensus 101 ~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~- 168 (275)
..+..+-..|-.. |+++.|.+.|++...- + .......+..+...+++.|++++|.++|++..... ...
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3556666677776 7788877777765431 2 11123355566667777778888888777754421 111
Q ss_pred ---HHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--hhhHHHHHHHH
Q 023915 169 ---AIKKFASAFVRLGNINLVNDVMKAIHAT--GYRID--QGIFHIAIARY 212 (275)
Q Consensus 169 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~y~~li~~~ 212 (275)
.+-..+-.+...|+...|.+.++..... ++..+ ......||.++
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 1222233445567777777777776653 22222 23455566664
No 161
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.14 Score=47.13 Aligned_cols=160 Identities=11% Similarity=0.117 Sum_probs=99.5
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 85 (275)
...+-+++|+.+|+... .+....+.||.- -+..+.|.++-+...+ | ..|..+..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n~----p--~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCNE----P--AVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhCC----h--HHHHHHHHHHHhcCchHHHH
Confidence 34455666666666543 244555555543 3455666666555433 2 35777777777777777766
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC
Q 023915 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESI 165 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (275)
.-|-. .-|+..|..+++...+.|.+++..+.+...+++...|.. -+.+|-+|++.+++.+.++++. .+
T Consensus 1125 eSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gp 1192 (1666)
T KOG0985|consen 1125 ESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA----GP 1192 (1666)
T ss_pred HHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc----CC
Confidence 55433 234567888888888889998888888877776666643 4578888888888877665543 33
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHH
Q 023915 166 SHPAIKKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 166 ~~~~~~~li~~~~~~~~~~~a~~~~~ 191 (275)
+......+-+-|...+.++.|.-+|.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 33344444455555555555554443
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.30 E-value=0.099 Score=45.40 Aligned_cols=101 Identities=11% Similarity=0.007 Sum_probs=70.1
Q ss_pred cccHHhHH--HHHHHHHhccchHHHHHHHHHhhcCC-Chh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 023915 132 SMCKALHE--KILHILISGKLLKDAYVVVKDNSESI-SHP-AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHI 207 (275)
Q Consensus 132 ~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~ 207 (275)
+|+...|. -+...+-..|+++.|...++.....- +.+ .|-.=.+.+...|.++.|..++++.++.. .||...=.-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 44544444 47778888999999999998766532 222 34444578888999999999999888754 344433323
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhCCC
Q 023915 208 AIARYIAEREKKELLLKLLEWMTGQGY 234 (275)
Q Consensus 208 li~~~~~~~~~~~~a~~l~~~m~~~~~ 234 (275)
-..-.+ +.++.++|.++.....+.|.
T Consensus 445 cAKYmL-rAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYML-RANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHH-HccccHHHHHHHHHhhhccc
Confidence 444333 66888899999988888876
No 163
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.29 E-value=0.003 Score=49.00 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCcHHhHHHHHHHHHcc-----CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC----------------HHHHH
Q 023915 27 KYDVVLLNSMLCAYCRT-----GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM----------------YILAY 85 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~----------------~~~a~ 85 (275)
+.|..+|-+.+..+... +.++-....+..|++-|+.-|..+|+.||+.+-+-.- -+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45777888888777654 5566677778889999999999999999998765432 22378
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhccCCHH-HHHHHHHHHH
Q 023915 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS-EALSVYNMLR 127 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~ 127 (275)
.++++|...|+.||..+-..|+++|++.+-.- +..++.-.|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 89999999999999999999999999987643 3444444443
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.045 Score=44.34 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH
Q 023915 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (275)
Q Consensus 65 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 144 (275)
..+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++..++-.. .. ++..|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHH
Confidence 3456667778888899888888876664 68989999999999999999987765432 22 34579999999
Q ss_pred HHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 145 LISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
|.+.|+..+|..++..+ ++..-+..|.++|++.+|.+.-.+. -|......+...
T Consensus 247 ~~~~~~~~eA~~yI~k~-------~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~ 300 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI-------PDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKR 300 (319)
T ss_pred HHHCCCHHHHHHHHHhC-------ChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHH
Confidence 99999999999998872 2266788999999999998875432 355556555554
No 165
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.016 Score=49.23 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=45.0
Q ss_pred CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-hHHH
Q 023915 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE-LCSS 105 (275)
Q Consensus 28 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ 105 (275)
+|..+++.|--.|--.|++++|.+.|+...+ ++|+ ..+||-|-..++...+..+|+..|++.++. +|+.+ +...
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh
Confidence 4444455555555555555555555555544 3343 234555555555555555555555555442 34322 3333
Q ss_pred HHHHHhccCCHHHHHHHHH
Q 023915 106 LIFHLGKMRAHSEALSVYN 124 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~ 124 (275)
|--+|...|.+.+|.+.|-
T Consensus 504 lgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred hhhhhhhhhhHHHHHHHHH
Confidence 4444555555555544443
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.034 Score=37.98 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHhc
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE----EELCSSLIFHLGK 112 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~ 112 (275)
++-..|+.++|+.+|++....|...+ ...+-.+-+.+...|++++|+.++++..... |+ ......+-.++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 34455666666666666666665443 2234455556666666666666666665431 22 1111222334555
Q ss_pred cCCHHHHHHHHHH
Q 023915 113 MRAHSEALSVYNM 125 (275)
Q Consensus 113 ~g~~~~a~~~~~~ 125 (275)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666665544
No 167
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.1 Score=43.08 Aligned_cols=196 Identities=12% Similarity=0.075 Sum_probs=118.4
Q ss_pred CCcHHhHHHHHHHHHc--cCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-h
Q 023915 27 KYDVVLLNSMLCAYCR--TGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE-L 102 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~ 102 (275)
.|+..+....|.+++. .++...|...+-.+.... ++-|......+.+.+...|+.+.|...|++.+.. .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 3444445555665554 455566666665555443 5556677889999999999999999999998754 34332 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC--ChhHHHHHHHHHHhc
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESI--SHPAIKKFASAFVRL 180 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~ 180 (275)
....--.+.+.|+.++...+...+-... .-+...|-.-...+-..++++.|+.+-++..... +.+.|-.=-+.+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 2222333456788888777777665332 1112223233333445667777777777655422 222333333556677
Q ss_pred CChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhchhHHHHHHHHHH
Q 023915 181 GNINLVNDVMKAIHATGYRI-DQGIFHIAIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 181 ~~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~~~~~~~a~~l~~~ 228 (275)
++.+.|.--|+..+.. .| +..+|.-|++.|. ..|++.+|.-+-++
T Consensus 348 ~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYL-A~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQML--APYRLEIYRGLFHSYL-AQKRFKEANALANW 393 (564)
T ss_pred cchHHHHHHHHHHHhc--chhhHHHHHHHHHHHH-hhchHHHHHHHHHH
Confidence 7888888777776653 33 5568888888887 44777766654443
No 168
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.15 E-value=0.0018 Score=46.14 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHhH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH-----RKGHQPEEELC 103 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~ 103 (275)
..+...++..+...|+++.|.++.+.+.... +-|...|..+|.++...|+...|.++|+.+. +.|+.|+..+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3456777888888999999999999988732 2356688899999999999999999999885 46899987654
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.019 Score=47.43 Aligned_cols=91 Identities=8% Similarity=-0.104 Sum_probs=73.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 37 LCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 37 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
-..+...|++++|++.|++..+. .|+ ...|..+..+|.+.|+++.|+..+++..+.. +.+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 34566789999999999999874 343 5567788888999999999999999998763 3356688888889999999
Q ss_pred HHHHHHHHHHHHhcc
Q 023915 116 HSEALSVYNMLRYSK 130 (275)
Q Consensus 116 ~~~a~~~~~~m~~~~ 130 (275)
++.|...|+......
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999877543
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.0028 Score=38.37 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHHhhc-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 148 GKLLKDAYVVVKDNSE-SI-SHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.|++++|+.+|++... .+ ++.....+...|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444332 11 222333444444444444444444444443
No 171
>PLN02789 farnesyltranstransferase
Probab=97.08 E-value=0.12 Score=42.11 Aligned_cols=211 Identities=6% Similarity=-0.033 Sum_probs=135.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEK-MYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
+++.+-..+...++.++|+.+.++..+ +.|+.. .|+.--..+...| ++++++..++++.+.. +-+..+|+.--..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 345555556677889999999999987 457654 3554444555666 6799999999998764 3344567655444
Q ss_pred HhccCCH--HHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--CChhHHHHHHHHHHhc---CC
Q 023915 110 LGKMRAH--SEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES--ISHPAIKKFASAFVRL---GN 182 (275)
Q Consensus 110 ~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~---~~ 182 (275)
+.+.|+. ++++.+++.+...... +-..|+..-..+...|+++++++.+.++.+. .+...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 5555653 6778888777755443 3447777778888889999999999998762 3333555443333333 22
Q ss_pred h----hHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhc----hhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 023915 183 I----NLVNDVMKAIHATGYRI-DQGIFHIAIARYIAER----EKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHL 250 (275)
Q Consensus 183 ~----~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~~----~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~ 250 (275)
. +............ .| |...|+-+-..+. .. ++..+|.+.+.+....+ +.+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~-~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFK-DDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHh-cCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 3555555555553 34 4556776666554 31 23445888887766533 3456677778888865
No 172
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=97.08 E-value=0.061 Score=38.89 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC--CHHHHHHHHHHHH
Q 023915 50 MHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR--AHSEALSVYNMLR 127 (275)
Q Consensus 50 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 127 (275)
.+.++.+.+.|+.|+...|..+|+.+.+.|.+.. +.++...++-+|.......+-.+.... -..-|+.++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566677778888888888888888888887554 566667777777766665554443321 1233444444432
Q ss_pred hccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 128 YSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 128 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
..+..+++.+...|++-+|..+.+...... ......++.+-...++...-..+++-..+.
T Consensus 90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 --------TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 135667777888888888888887643321 223345667777777766666666665553
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.075 Score=40.17 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
+...|++++|.+.|+.+...- |+ ....-.+..++.+.|+++.|...+++..+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677777777777776531 21 112335556666777777777777776653
No 174
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.06 E-value=0.051 Score=38.27 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=73.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
...+|..+.+.+.+.....+++.+...+ ..+...++.++..|++.+. +.....+.. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456666666667777777777776665 2555567777777776532 333333332 1233444557777777
Q ss_pred cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc-cchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 023915 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG-KLLKDAYVVVKDNSESISHPAIKKFASAFV 178 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 178 (275)
.+.++.+..++..+. -+...+..+... ++.+.|.+.+.+ ..++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~---------~~~~Al~~~l~~~~d~~~a~~~~~~---~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDG---------NFKDAIVTLIEHLGNYEKAIEYFVK---QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhc---------CHHHHHHHHHHcccCHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 777777777776653 233344444444 667777777665 234446666665554
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.051 Score=37.12 Aligned_cols=88 Identities=14% Similarity=-0.081 Sum_probs=53.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhccCCHHHHHHHHHHHHhcccc--ccHHhHHHHHHHHHhc
Q 023915 73 KYFCKEKMYILAYRTMVDMHRKGHQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS--MCKALHEKILHILISG 148 (275)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~ 148 (275)
.++-..|+.++|+.+|++....|.... ...+-.+-..+...|++++|..+++......+. .+......+-.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 455667888888888888887776554 234555666777778888888888776654221 1111222223355566
Q ss_pred cchHHHHHHHHH
Q 023915 149 KLLKDAYVVVKD 160 (275)
Q Consensus 149 ~~~~~a~~~~~~ 160 (275)
|+.++|+..+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 777777666654
No 176
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.02 E-value=0.22 Score=44.23 Aligned_cols=53 Identities=8% Similarity=0.000 Sum_probs=35.1
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
|+..++++.|.+...+..+.+..-+...|..|.-.+...+++.+|+.+.+...
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44556677777777776666555566777777777777777777777665544
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.98 E-value=0.13 Score=41.04 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHhccCCHHHH
Q 023915 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK----GHQPE-EELCSSLIFHLGKMRAHSEA 119 (275)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a 119 (275)
++++|.++|.+. ...|-..+++++|...|....+. +-+.+ ...|......|.+. ++++|
T Consensus 30 ~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 566666666554 33445556666665555554321 11111 12333333344333 66666
Q ss_pred HHHHHHHHh----ccc-cccHHhHHHHHHHHHhc-cchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcCChhH
Q 023915 120 LSVYNMLRY----SKR-SMCKALHEKILHILISG-KLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLGNINL 185 (275)
Q Consensus 120 ~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~ 185 (275)
...++.... .|. ..-...+..+-..|-.. |+++.|.+.|++..+ ...+. .+..+...+.+.|++++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 666655432 121 11223445555666666 889999998887554 22222 45667888999999999
Q ss_pred HHHHHHHHHHcCCC-----CChh--hHHHHHHHHHHhchhHHHHHHHHHHHhhC--CCCCC--hhhHHHHHHHHHHhh
Q 023915 186 VNDVMKAIHATGYR-----IDQG--IFHIAIARYIAEREKKELLLKLLEWMTGQ--GYVVD--SSTRNLILKNSHLFG 252 (275)
Q Consensus 186 a~~~~~~m~~~g~~-----p~~~--~y~~li~~~~~~~~~~~~a~~l~~~m~~~--~~~p~--~~t~~~li~~~~~~g 252 (275)
|.++|++....-.. ++.. .+..+|-. + ..|+.-.|.+.+++.... ++..+ ......||+++-...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~-L-~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH-L-AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH-H-HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHH-H-HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 99999998764322 2222 23444433 3 346777799999998654 34333 566677777775544
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.96 E-value=0.12 Score=40.23 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=96.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF----HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~----~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
.|.. ...+.+.|++++|.+.|+++... -|+...- -.+..++.+.++++.|...+++..+.--.-...-|...+
T Consensus 35 ~Y~~-A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYAT-AQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3443 34445688899999999888773 3443221 245577788899999999998887653222222344444
Q ss_pred HHHhc--c---------------CC---HHHHHHHHHHHHhccccc----cHHh------------HHHHHHHHHhccch
Q 023915 108 FHLGK--M---------------RA---HSEALSVYNMLRYSKRSM----CKAL------------HEKILHILISGKLL 151 (275)
Q Consensus 108 ~~~~~--~---------------g~---~~~a~~~~~~m~~~~~~~----~~~~------------~~~li~~~~~~~~~ 151 (275)
.+.+. . .+ ...|+..|+.+...-+.. .... --.+-+-|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 44321 1 12 234556666665432111 1110 01233346678888
Q ss_pred HHHHHHHHHhhcC-CCh----hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 152 KDAYVVVKDNSES-ISH----PAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 152 ~~a~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
..|..-++.+.+. +.. .....++.+|...|..+.|..+...+..
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 8888888887762 222 2456778999999999999888776543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.13 Score=44.85 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=39.3
Q ss_pred HHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 135 KALHEKILHILISGKLLKDAYVVVKDNSE-SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
+..|.++--.....|++++|...+++... .++...|..+...+...|+.++|.+.+...... .|...+|
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 34455444444455666666666666544 333345666666677777777777776665543 3444444
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.025 Score=44.35 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=43.0
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHH
Q 023915 41 CRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSE 118 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~ 118 (275)
.+.+++.+|+..|.+..+ +.|+- +-|..=..+|++.|.++.|.+=-+..+. +.|.. .+|..|-.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 445566666666666555 33433 2334555556666666555554444433 23332 356666666666666666
Q ss_pred HHHHHHHH
Q 023915 119 ALSVYNML 126 (275)
Q Consensus 119 a~~~~~~m 126 (275)
|.+.|+..
T Consensus 168 A~~aykKa 175 (304)
T KOG0553|consen 168 AIEAYKKA 175 (304)
T ss_pred HHHHHHhh
Confidence 66655543
No 181
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.86 E-value=0.088 Score=37.06 Aligned_cols=125 Identities=12% Similarity=0.125 Sum_probs=72.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
..++..+.+.+.......+++.+...+ ..+....+.++..|++.+ .++..+.+.. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 456666666677777777777777665 356667777777777653 3344444432 1 1222334477777777
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 149 KLLKDAYVVVKDNSESISHPAIKKFASAFVRL-GNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
+.++++..++.++.. +...+..+... ++.+.|.+.+.. .-+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 777777777776533 22233333333 667777776553 124556666665543
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.81 E-value=0.0098 Score=35.57 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
.+.+.|++++|.+.|++..+.. | +...+..+...+.+.|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555533 3 333444555555555555555555555543
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.80 E-value=0.014 Score=35.83 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=31.2
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
..|.+.++++.|.++++.+...++. +...|...-.++.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666666555333 444555555555566666666666665554
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.80 E-value=0.086 Score=43.94 Aligned_cols=144 Identities=13% Similarity=0.171 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKG-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 144 (275)
..|...|++..+..-++.|..+|-+.++.| +.+++..++++|..++. |+...|.++|+.-...- +-+..--+..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 457778888888888999999999999999 68899999999998875 78888999998544332 2222234567778
Q ss_pred HHhccchHHHHHHHHHhhc----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 145 LISGKLLKDAYVVVKDNSE----SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
+...++-+.|..+|+.... ..-.+.|..+|.-=..-|++..+..+=+.|.+. .|-..+-....+.|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 8889999999999995433 334568999999888999998888887777763 455555555554443
No 185
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.79 E-value=0.18 Score=40.49 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHc--cCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 023915 31 VLLNSMLCAYCR--TGDMESVMHVMRKLDELAISPDYNTFHI 70 (275)
Q Consensus 31 ~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 70 (275)
.++.+++..-.. ...+++.+++++.|.+.|++-+..+|-+
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHH
Confidence 344444444444 1235555555566665555555555443
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.78 E-value=0.084 Score=37.66 Aligned_cols=94 Identities=12% Similarity=-0.095 Sum_probs=70.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 145 (275)
..-.+-.-+...|+++.|..+|+-+... .|. ..-|-.|-.++-..|++++|+..|.....-.+ -++..+-.+-.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3445555567889999999999988765 444 44556677777788999999999998776553 3445666777788
Q ss_pred HhccchHHHHHHHHHhhc
Q 023915 146 ISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~ 163 (275)
...|+.+.|.+-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 899999999999987655
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.76 E-value=0.22 Score=40.40 Aligned_cols=83 Identities=11% Similarity=-0.025 Sum_probs=39.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhch
Q 023915 138 HEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAERE 217 (275)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~ 217 (275)
.+..|..+...|+...|.++-++. +-++...|..-+.+++..++|++...+... +-.+..|..++..+. ..|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F-kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~-~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF-KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL-KYG 251 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH-HCC
Confidence 334444555555555555554443 122333455555555555555555444221 112345555555544 345
Q ss_pred hHHHHHHHHHH
Q 023915 218 KKELLLKLLEW 228 (275)
Q Consensus 218 ~~~~a~~l~~~ 228 (275)
+.++|..++..
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 55555555554
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.059 Score=42.42 Aligned_cols=94 Identities=11% Similarity=-0.057 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhccCCHHHHHHHHHHHHhccc--cccHHhHHHH
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKR--SMCKALHEKI 141 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l 141 (275)
|...+..+.+.|++++|...|+.+.+.- |+. .++..+-.+|...|++++|...|+.+....+ +.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3343333344455555555555554431 221 2344455555555555555555555543211 1112222233
Q ss_pred HHHHHhccchHHHHHHHHHhhc
Q 023915 142 LHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~ 163 (275)
...+...|+.+.|...+++...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555443
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0073 Score=37.68 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhc----C-CCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDEL----A-ISPD-YNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
.+|+.+-..|...|++++|++.|++..+. | -.|+ ..+++.+...+...|+++.|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777777888888888777776642 1 1122 4456677777777777777777777654
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.71 E-value=0.18 Score=45.43 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 023915 138 HEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAI 193 (275)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 193 (275)
|-++++..|-.|+.++|-.+-++ .++....-.+.+.|-..|++.+|...|...
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444444555555555554443 333334445666677777777777666543
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.69 E-value=0.1 Score=45.32 Aligned_cols=143 Identities=7% Similarity=-0.125 Sum_probs=95.8
Q ss_pred cCCCCcHHhHHHHHHHHH-----ccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHcc--------CCHHHHHHHHH
Q 023915 24 KYDKYDVVLLNSMLCAYC-----RTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKE--------KMYILAYRTMV 89 (275)
Q Consensus 24 ~g~~p~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~--------~~~~~a~~~~~ 89 (275)
.+...|...|...+++.. ..+..+.|.++|++..+ ..|+-. .|..+..++... .++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 455668888888888754 35888899999999887 457742 333322222211 12344555555
Q ss_pred HHHHc-CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCCh
Q 023915 90 DMHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SISH 167 (275)
Q Consensus 90 ~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~ 167 (275)
+.... ....+...|..+-......|++++|...+++...... +...|..+-..+...|+.++|.+.+++... .+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 44432 2334556777765666667999999999998876663 566888888899999999999999988654 5555
Q ss_pred hHH
Q 023915 168 PAI 170 (275)
Q Consensus 168 ~~~ 170 (275)
|+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 654
No 192
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.2 Score=38.55 Aligned_cols=186 Identities=14% Similarity=0.080 Sum_probs=132.4
Q ss_pred hcCcHHHHHHHHHHHHh---cC-CCCcHH-hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHccCC
Q 023915 7 RGGCFEEAKQLAGDFEA---KY-DKYDVV-LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-FCKEKM 80 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~---~g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~~~ 80 (275)
...+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- |...--..+=.. +-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 45678889999988875 34 555664 46777778888899999999999988753 544322222111 334688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
+++|.++++.+.+.. +.|..++-.=+...-..|+.-.|++-+..... ....|...|.-+-..|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999775 56677777666666667777787777776653 3455777999999999999999999999999
Q ss_pred hhc-CCChhH-HHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 023915 161 NSE-SISHPA-IKKFASAFVRLG---NINLVNDVMKAIHAT 196 (275)
Q Consensus 161 ~~~-~~~~~~-~~~li~~~~~~~---~~~~a~~~~~~m~~~ 196 (275)
+.- .|..|. +..+...+.-.| +.+.+...|..-.+.
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 764 555553 344555444443 666777777766553
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.64 E-value=0.014 Score=35.35 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccC-CHHHHHHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEK-MYILAYRTMVDMH 92 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~-~~~~a~~~~~~m~ 92 (275)
+.+|..+-..+.+.|++++|+..|++..+. .| +...|..+-.++.+.| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555542 23 2334444445555555 4555555555444
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.64 E-value=0.11 Score=40.86 Aligned_cols=102 Identities=8% Similarity=-0.018 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc--cHHhHHHHHHHHHhccchHHHHHHHHHhhcC-CCh----hHHHH
Q 023915 100 EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM--CKALHEKILHILISGKLLKDAYVVVKDNSES-ISH----PAIKK 172 (275)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~ 172 (275)
...|...+..+.+.|++++|...|+.+....+.. .+..+-.+-..|...|++++|...|+..... +.. ..+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3467777766677899999999999998764332 2346677888999999999999999998752 222 24445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 023915 173 FASAFVRLGNINLVNDVMKAIHATGYRIDQG 203 (275)
Q Consensus 173 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 203 (275)
+...+...|+.+.|..+|+.+.+. -|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 566788899999999999998875 35544
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.58 E-value=0.018 Score=34.85 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHh
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRY 128 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 128 (275)
+..+|..+-..+.+.|+++.|+..|++..+.. +-+...|..+-.+|.+.| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567777777888888888888888877753 334557777777788887 68888887776543
No 196
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.50 E-value=0.52 Score=41.34 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=10.1
Q ss_pred hhhcCcHHHHHHHHHHHHh
Q 023915 5 FCRGGCFEEAKQLAGDFEA 23 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~ 23 (275)
|-..|+++.|..+|+...+
T Consensus 397 Ye~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHhcCcHHHHHHHHHHhhc
Confidence 4445555555555555544
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.44 E-value=0.13 Score=43.14 Aligned_cols=64 Identities=8% Similarity=-0.002 Sum_probs=56.2
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh----hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN----TFHILIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
+...++.+-.+|.+.|++++|+..|++..+ +.|+.. +|..+..+|.+.|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999887 557754 5899999999999999999999998875
No 198
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.42 E-value=0.17 Score=34.86 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHhccchHHHHHHHHHhh--cCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 140 KILHILISGKLLKDAYVVVKDNS--ESISHPAIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
..+..++..|+-+.-.++..++. +..+|+..-.+..+|.+.|+..++.+++.+..+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34444444444444444444443 12333344444455555555555555555544444
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.37 E-value=0.66 Score=42.79 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHH--HH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKI--LH 143 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~ 143 (275)
..|..|-..|+...|...|.+.|+...+.. ..+......+.+.|++..+++.|..+.-..-+.. +.-...++.. --
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 367788888888888888888888877543 3455677889999999999999998833222211 1111122222 22
Q ss_pred HHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHHhchhH
Q 023915 144 ILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI--FHIAIARYIAEREKK 219 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~~~~~ 219 (275)
.|.+.++..+|..-|+.... ..+...+..+..+|.++|+...|.++|..... +.|+... |-.-+.- | ..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~e-c-d~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVME-C-DNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHH-H-HhhhH
Confidence 34567788888888877554 22333567788999999999999999987766 3465431 2211111 2 45777
Q ss_pred HHHHHHHHHHh
Q 023915 220 ELLLKLLEWMT 230 (275)
Q Consensus 220 ~~a~~l~~~m~ 230 (275)
.++...+....
T Consensus 647 keald~l~~ii 657 (1238)
T KOG1127|consen 647 KEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.35 Score=37.60 Aligned_cols=142 Identities=10% Similarity=0.038 Sum_probs=93.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH----
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH---- 143 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~---- 143 (275)
.+.++..+.-.|.+.-...++.+.++..-+.++...+.|...-.+.|+.+.|...|+..++.....+...++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3556666666778888888888888876667777888888888889999999999998877655555555555443
Q ss_pred -HHHhccchHHHHHHHHHhhcC-CChh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 144 -ILISGKLLKDAYVVVKDNSES-ISHP-AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 144 -~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
.+.-.+++..|...+.+.... +..+ ..|.=.-...-.|+..+|.+.+..|.+. .|...+-++++--
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n 328 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN 328 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence 333456777777777766552 2222 2232222223357788888888888774 4555555544433
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.38 Score=37.41 Aligned_cols=136 Identities=9% Similarity=-0.032 Sum_probs=98.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH---
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF--- 108 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~--- 108 (275)
+.+.++..+.-.|.+.-.+.++.+..+..-+.+......|.+.-.+.||.+.|...|++..+..-..|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667777777788888999999998876667777788888999999999999999998887655666666665544
Q ss_pred --HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh
Q 023915 109 --HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP 168 (275)
Q Consensus 109 --~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (275)
.|.-.+++-.|...+.++...... +....|.---+..-.|+..+|++.++.+....+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 344466777788888776654322 12223333333445789999999999998865555
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.48 Score=37.47 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=55.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYNTFHILIKYFC---KEKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
|...|-.|-.+|...|+++.|..-|....+ .|-.|+. +..+..++. ...+..++..+|+++.... +-|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 666677777777777777777777766655 2322222 222222222 2234455666676666542 23444555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
.|-..+...|++.+|...|+.|...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5666666677777777777766654
No 203
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.11 E-value=0.58 Score=37.89 Aligned_cols=220 Identities=12% Similarity=0.040 Sum_probs=139.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCC--cHHhH------------HHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKY--DVVLL------------NSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTF 68 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~ 68 (275)
.+.+.|.+++|..=|+........- +...+ -..+..+...|+...|+++...+.+ +.| |...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHH
Confidence 4678999999999999998764321 11111 2233456677899999999999887 445 55667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc--HHhHHH---HH-
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC--KALHEK---IL- 142 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~---li- 142 (275)
..-..+|...|++..|+.=+....+.. .-+..++..+-..+-..|+.+.++...++-..-.+.-. -..|-. ++
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 777889999999999887776665543 34455677777788888999998888887664321110 012221 11
Q ss_pred -----HHHHhccchHHHHHHHHHhhc-CCChh--HH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 023915 143 -----HILISGKLLKDAYVVVKDNSE-SISHP--AI---KKFASAFVRLGNINLVNDVMKAIHATGYRID-QGIFHIAIA 210 (275)
Q Consensus 143 -----~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~ 210 (275)
......++|.++++-.+...+ .+..+ .| ..+-..+...+++.+|++.-.+..+ +.|| ..++---..
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 123345667777766665443 34322 23 3445566667889999988887766 3465 555555555
Q ss_pred HHHHhchhHHHHHHHHHHH
Q 023915 211 RYIAEREKKELLLKLLEWM 229 (275)
Q Consensus 211 ~~~~~~~~~~~a~~l~~~m 229 (275)
+|. -...+|.|..=|+..
T Consensus 350 A~l-~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 350 AYL-GDEMYDDAIHDYEKA 367 (504)
T ss_pred HHh-hhHHHHHHHHHHHHH
Confidence 554 334455555544444
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.04 E-value=0.046 Score=33.43 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
.|.+.+++++|.++++.+... .|+ ...+...-..+.+.|+++.|...|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555442 122 22333444444455555555555555443
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.01 E-value=0.99 Score=39.76 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHccCCHHHHHHHH
Q 023915 13 EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA----ISPDYNTFHILIKYFCKEKMYILAYRTM 88 (275)
Q Consensus 13 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~~~~~~a~~~~ 88 (275)
+...-++++++.|-.|+..... ..|+-.|++.+|-++|.+--..+ .-.|...|. ..+-+...|+.++-..+.
T Consensus 618 ~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHH
Confidence 3444456777788888875432 34455677777777765532211 001111111 223344445544433333
Q ss_pred HHHHH--cCC-CCCHHhHHHHHHHHhccCCHHHHHHHHHH-----HH-hcccccc---HHhHHHHHHHHHhccchHHHHH
Q 023915 89 VDMHR--KGH-QPEEELCSSLIFHLGKMRAHSEALSVYNM-----LR-YSKRSMC---KALHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 89 ~~m~~--~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~-~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 156 (275)
+.--+ ..+ +|. +....+...|+.++|..+.-+ |. .-+...+ ..+...+-.-+.+...+..|-+
T Consensus 694 RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 694 RKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 32211 111 222 233444556777777655321 11 1112222 2233333344445666777888
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-----------hHHHHHHHHHHhchhHHHHHHH
Q 023915 157 VVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG-----------IFHIAIARYIAEREKKELLLKL 225 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~y~~li~~~~~~~~~~~~a~~l 225 (275)
+|.+|.+. .+++..+...++|++|..+-+...+ +.||.. -|.-.-.+|- +.|+..+|..+
T Consensus 769 IF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfh-kAGr~~EA~~v 839 (1081)
T KOG1538|consen 769 IFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFH-KAGRQREAVQV 839 (1081)
T ss_pred HHHHhccH------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHH-HhcchHHHHHH
Confidence 88776542 3566777888899998888776554 345543 2333444554 56777778888
Q ss_pred HHHHhhCCC
Q 023915 226 LEWMTGQGY 234 (275)
Q Consensus 226 ~~~m~~~~~ 234 (275)
++++....+
T Consensus 840 LeQLtnnav 848 (1081)
T KOG1538|consen 840 LEQLTNNAV 848 (1081)
T ss_pred HHHhhhhhh
Confidence 888765543
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.48 Score=42.66 Aligned_cols=177 Identities=10% Similarity=0.078 Sum_probs=106.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHH----HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI----KYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
...-|+.+++...++.|+.+-. ..+..|+ +-..+. +.+.+.|++++|..-|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4455666666667777776633 3333333 333333 3345678888887766665422 233 23666
Q ss_pred HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVND 188 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 188 (275)
-|....+...-..+++.+-..|.... ..-..|+.+|.+.++.+.-.++.+........-.....+..+.+.+-.+.|..
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHH
Confidence 66666777777777777776666543 34567888888888888877777765532222245667777777777777776
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 189 VMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 189 ~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
+-..... +......++. ..+++++|.+.+..|.
T Consensus 485 LA~k~~~-----he~vl~ille----~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILLE----DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-----CHHHHHHHHH----HhcCHHHHHHHHhcCC
Confidence 6543322 3334444443 3466777777776654
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.96 E-value=0.019 Score=35.81 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCC-HHhHHHHHHHHhccCCHHHHHHHHHHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRK----GH-QPE-EELCSSLIFHLGKMRAHSEALSVYNML 126 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 126 (275)
.+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+-..|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667777777777777777777776632 11 122 345666666777777777777776654
No 208
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=1.1 Score=38.41 Aligned_cols=214 Identities=14% Similarity=0.082 Sum_probs=113.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC--Ch----hhHHHHHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP--DY----NTFHILIKYFC 76 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~----~t~~~li~~~~ 76 (275)
++.-+..++..|.+-++...+.. -+..-++..-.+|...|...++...-+.-.+.|-.. |. ..+..+-.+|.
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 34456677888888888777654 355566777778888888877777766655554211 11 11222334666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (275)
+.++++.+...|.+....-..|+.. .+....+++++........+......... --..+.+.|++..|..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~-kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKAEEERE-KGNEAFKKGDYPEAVK 379 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHHHHHHH-HHHHHHhccCHHHHHH
Confidence 7788888888888866544444431 12223333333333332222222111111 1334455666667766
Q ss_pred HHHHhhcC-C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 157 VVKDNSES-I-SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 157 ~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
.+.++... + +...|..-.-+|.+.|.+..|..=-+...+. .|+. ..|.-=..++ ....+++.|.+.|++-.+
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al-~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL-RAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 66665442 2 2225666666666666666666655554443 2322 1222111122 133556666666665544
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.80 E-value=0.91 Score=38.20 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=109.3
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH-HHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELC-SSLI 107 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li 107 (275)
..+|...|....+..-.+.|..+|-+.++.| +.+++..+++.|..++. |+...|..+|+-=... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4568889999989999999999999999999 77999999999988775 5677788888763332 3555544 4577
Q ss_pred HHHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh-hHHHHHHHHHHhc
Q 023915 108 FHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH-PAIKKFASAFVRL 180 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~ 180 (275)
..+.+.++-+.|..+|+.-... ...--...|..+|+-=..-|++..+..+=+.+....+. .+...+.+.|...
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 7888899999999999944322 11112348999999999999999888887777664333 3444555555443
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.78 E-value=1.1 Score=38.61 Aligned_cols=159 Identities=8% Similarity=-0.043 Sum_probs=97.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHhc----cCCHHHHHHHHHHHHhccccccHHhH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEE------ELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALH 138 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 138 (275)
..+++..+-.||-+.+++.+.+-.+.+-.-.+ ..|..++..++. ..+.+.|.++++.+... .|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455556678888888888876653322221 244555554443 35677788888888754 3344344
Q ss_pred HH-HHHHHHhccchHHHHHHHHHhhc-CCChh-----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 139 EK-ILHILISGKLLKDAYVVVKDNSE-SISHP-----AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 139 ~~-li~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
.. --+.+...|++++|++.|++... ...-+ .+--+.-.+...++|++|.+.|..+.+.+ ..+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 33 22344567889999999986543 11111 22234556777889999999998888754 3345566666555
Q ss_pred HHHhchhH-------HHHHHHHHHHh
Q 023915 212 YIAEREKK-------ELLLKLLEWMT 230 (275)
Q Consensus 212 ~~~~~~~~-------~~a~~l~~~m~ 230 (275)
+....++. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 54455655 77777777653
No 211
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.26 Score=38.92 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=71.3
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHH
Q 023915 75 FCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
..+.+++.+|+..|.+.++.. +-|.+-|..=-.+|++.|.++.|.+=-+....-.... ...|..|=.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccCcHHHH
Confidence 567789999999999988752 3455666778889999999998887766555433332 34788888899999999999
Q ss_pred HHHHHHhhc-CCChhHHHH
Q 023915 155 YVVVKDNSE-SISHPAIKK 172 (275)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~ 172 (275)
++-|++..+ .++..+|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHhhhccCCCcHHHHH
Confidence 999888666 555555543
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.76 E-value=1.1 Score=38.62 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=102.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhc-CCCC-----cHHhHHHHHHHHHcc----CCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAK-YDKY-----DVVLLNSMLCAYCRT----GDMESVMHVMRKLDELAISPDYNTFHIL 71 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~-g~~p-----~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~l 71 (275)
++..+=.||-+.+++++.+-.+. |+.- -.-.|+.++..++.. .+.+.|.++++.+.+ --|+...|...
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 45566678888888888876653 2321 123466666655543 467788899988877 34887777643
Q ss_pred H-HHHHccCCHHHHHHHHHHHHHcC--C-CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH-H
Q 023915 72 I-KYFCKEKMYILAYRTMVDMHRKG--H-QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL-I 146 (275)
Q Consensus 72 i-~~~~~~~~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~ 146 (275)
- +.+...|+++.|.+.|+...... . +.....+-.+...+.-.+++++|.+.|..+.+... -+..+|.-+..+| .
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 3 45667799999999999765321 1 22334566677778888999999999998876422 1333444333332 2
Q ss_pred hccch-------HHHHHHHHHhhc
Q 023915 147 SGKLL-------KDAYVVVKDNSE 163 (275)
Q Consensus 147 ~~~~~-------~~a~~~~~~~~~ 163 (275)
..++. ++|.++|++...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 45555 777888877543
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.65 E-value=0.56 Score=40.00 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=50.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
.+.++..+-+.|..+.|+++-.+-.. -.+...+.|+++.|.++-++.. ++..|..|-+....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKELD------DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHH
Confidence 45555555555655555554433211 1222334555555555433321 33455555555556
Q ss_pred ccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 148 GKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.|+++-|.+.+.+.. .+..|+-.|...|+.+...++.+....
T Consensus 360 ~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 360 QGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp TTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666665555522 345555555556665555555554444
No 214
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.3 Score=37.92 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=71.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~ 81 (275)
++.+..|+++.|...|.+.....+. |.+.|+.=..+|++.|++++|++=-.+-++ +.|+- ..|+-.-.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3567889999999999999876555 888999999999999999999876555554 66774 4688888888888999
Q ss_pred HHHHHHHHHHHHc
Q 023915 82 ILAYRTMVDMHRK 94 (275)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (275)
+.|+..|.+=++.
T Consensus 87 ~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 87 EEAILAYSEGLEK 99 (539)
T ss_pred HHHHHHHHHHhhc
Confidence 9998888775543
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=95.45 E-value=0.26 Score=35.45 Aligned_cols=88 Identities=10% Similarity=-0.064 Sum_probs=62.3
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHH
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPDYNT-FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 117 (275)
.+-..|++++|..+|.-+.--+ |...- |..|-..+-..+++++|..+|...-..+. -|+..+-..-.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3457789999999988887633 33333 34555556666889999998888766542 34445666778888889999
Q ss_pred HHHHHHHHHHhc
Q 023915 118 EALSVYNMLRYS 129 (275)
Q Consensus 118 ~a~~~~~~m~~~ 129 (275)
.|...|......
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999988887763
No 216
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.39 E-value=1.1 Score=35.99 Aligned_cols=149 Identities=9% Similarity=0.081 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc--cC----CHHHHHHHHHHHHhcccccc---HHhHHHHHHHHHhccc-
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGK--MR----AHSEALSVYNMLRYSKRSMC---KALHEKILHILISGKL- 150 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~- 150 (275)
++..+.+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|.+.++-.+ ...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567899999999999988777663333322 22 35679999999998765433 2344445433 2222
Q ss_pred ---hHHHHHHHHHhhcCC----ChhHH-HHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchh--
Q 023915 151 ---LKDAYVVVKDNSESI----SHPAI-KKFASAFVRLG--NINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREK-- 218 (275)
Q Consensus 151 ---~~~a~~~~~~~~~~~----~~~~~-~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~-- 218 (275)
.+.++.+++.+.+.+ +.-.+ ..++..+.... ...++.++++.+.+.|+++....|..+--.-....+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 345566666666522 22122 22222222222 2458889999999999998888777543221112222
Q ss_pred -HHHHHHHHHHHhh
Q 023915 219 -KELLLKLLEWMTG 231 (275)
Q Consensus 219 -~~~a~~l~~~m~~ 231 (275)
.+...++.+.+.+
T Consensus 236 ~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 236 IVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHhh
Confidence 4455566666644
No 217
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.21 E-value=2.6 Score=39.16 Aligned_cols=179 Identities=11% Similarity=-0.048 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHH
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMV 89 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~ 89 (275)
...|+..|-...+.... =...|..|-..|+...+...|...|+...+ +.| |......+.+.|++..+++.|....-
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44455554444433221 235678888888777777788888888766 333 34456778888888888888887722
Q ss_pred HHHHcCCCCCH---HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC
Q 023915 90 DMHRKGHQPEE---ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS 166 (275)
Q Consensus 90 ~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (275)
.. ....|-. ..|-..--.|...++...+..-|+......+. +-..|..+.++|...|++..|.++|.+...-.+
T Consensus 551 ~~--~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 551 RA--AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HH--hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 22 1111211 11222333455667777777766665433222 344667777788888888888888777655444
Q ss_pred hhHHHHHHH--HHHhcCChhHHHHHHHHHHH
Q 023915 167 HPAIKKFAS--AFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 167 ~~~~~~li~--~~~~~~~~~~a~~~~~~m~~ 195 (275)
...|..+-. ..+..|.+.++...+.....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445544332 23455666666666655443
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.04 E-value=0.99 Score=33.32 Aligned_cols=101 Identities=14% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC----CChhHHH
Q 023915 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES----ISHPAIK 171 (275)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 171 (275)
.-|++..--.|-.+....|+..+|...|++-......-+......+-++....++...|...++++.+. .+|++--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666677777777777777777777766555556666666667777777777777777776552 2333455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
.+.+.|...|+..+|+.-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 6667788888888888888777664
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.93 E-value=1.2 Score=33.67 Aligned_cols=168 Identities=10% Similarity=0.009 Sum_probs=94.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGHQ--PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
...+...|+++.|...|+.+...--. .-....-.+..++.+.|+++.|...++.+....+.-...-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34467789999999999999875321 2234566788899999999999999999887544333333444444433222
Q ss_pred ch-------------HHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc
Q 023915 150 LL-------------KDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER 216 (275)
Q Consensus 150 ~~-------------~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~ 216 (275)
.. .+|.. .+..++.-|-.+....+|...+..+.+. .-..-+. +..-|. +.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~~-ia~~Y~-~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE------------EFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHELY-IARFYY-KR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHHH-HHHHHH-CT
T ss_pred hCccchhcccChHHHHHHHH------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHHH-HHHHHH-Hc
Confidence 21 22222 3445555555556666666655555441 1112222 233344 56
Q ss_pred hhHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHhhHHHH
Q 023915 217 EKKELLLKLLEWMTGQ--GYVVDSSTRNLILKNSHLFGRQLI 256 (275)
Q Consensus 217 ~~~~~a~~l~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~ 256 (275)
|.+..|..-++.+.+. +.+-.....-.+++++.+.|....
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 7777787777777664 111123455667777777775443
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.86 E-value=0.79 Score=38.68 Aligned_cols=64 Identities=6% Similarity=-0.155 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
+...++.+-.+|.+.|++++|+..|++.++. .|+. .+|..+-.+|.+.|+.++|...++.....
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888888999999999999999987765 4653 35888888999999999999998887653
No 221
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.83 E-value=0.4 Score=40.85 Aligned_cols=156 Identities=14% Similarity=0.007 Sum_probs=98.1
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
..-.|+++.+.+....=.-- ...+..-.+.+++-+-+.|..+.|+++-.+-. .-.....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 45578888877776411111 11235568999999999999999998864422 223445678888887
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
.+..++ ..+...|..|-+...+.|+++-|.+.|+... -|..++--|...|+.+.-.++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 765544 3466788999999999999999998888754 4677777788888877766666655444
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHH
Q 023915 165 ISHPAIKKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 165 ~~~~~~~~li~~~~~~~~~~~a~~~~~ 191 (275)
+. +|....++.-.|+.++..+++.
T Consensus 403 ~~---~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD---INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC---HHHHHHHHHHcCCHHHHHHHHH
Confidence 33 5555666666788887777754
No 222
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.48 Score=37.82 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=78.7
Q ss_pred cCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 023915 24 KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL---AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 24 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (275)
.|...+..+-..++..-....+++++...+-.++.. ...|+... .++++-+.+ -+++.++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 355667778888888888888999999988777754 13333322 233333333 4677899999999999999999
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
.+++.+|+.+.+.++...|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999998887766543
No 223
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.81 E-value=2.9 Score=37.59 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=38.7
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 60 AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 60 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
.+.-|...|..+--+..+.|+++.+-+.|++.... ..-....|..+-..|..+|....|..+++.-..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 34445556666666666666666666666665432 223334555666666666666666666665443
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.73 E-value=0.91 Score=31.42 Aligned_cols=138 Identities=7% Similarity=0.050 Sum_probs=80.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDAY 155 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (275)
-.|..++..++..+.... .+..-||.+|--....-+.+-..++++.+-.. .+.+.. -.-.++..|+..+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n------ 83 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRN------ 83 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT------
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhc------
Confidence 346666667777776643 34455666666666666666666666665322 111110 1122333333332
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCC
Q 023915 156 VVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~ 235 (275)
.....++..+..+...|+-+...++++++.. +-.|++...-.+-.+|- +.|...++.+++.+.-+.|++
T Consensus 84 ---------~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 ---------KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYK-KLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHhchH
Confidence 2233556778889999999999999999875 33677777788888885 889999999999999998874
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.68 E-value=1.3 Score=32.80 Aligned_cols=153 Identities=16% Similarity=0.039 Sum_probs=105.3
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 37 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
..+..+.-+++...+-..+- -...|+...--.|..+....|+..+|...|++....-+--|....-.+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~--~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEE--LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHH--HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 33344444444443322222 2356888777788999999999999999999988654566777788888888889999
Q ss_pred HHHHHHHHHHHhcc---ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 023915 117 SEALSVYNMLRYSK---RSMCKALHEKILHILISGKLLKDAYVVVKDNSESI-SHPAIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 117 ~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
-.|...++.+.+.+ ..|+ +...+-+.+...|...+|..-|+.....- .+..-.-.-..+.+.|+.+++..-+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999877653 3333 45667788889999999999998877633 333333334556677766665554444
Q ss_pred H
Q 023915 193 I 193 (275)
Q Consensus 193 m 193 (275)
+
T Consensus 219 v 219 (251)
T COG4700 219 V 219 (251)
T ss_pred H
Confidence 3
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.62 E-value=0.8 Score=33.74 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=30.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHhccCCHHHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE--ELCSSLIFHLGKMRAHSEALSVYNML 126 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m 126 (275)
.+..+...|.+.|+.+.|++.|.++++....|.. ..+-.+|....-.+++..+.......
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555555555555555555554333322 23444555555555555555554443
No 227
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.42 E-value=0.37 Score=38.11 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=67.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR-----KGHQPEEELC 103 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~ 103 (275)
-..++..++..+...|+++.+.+.++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34578889999999999999999999988742 24667899999999999999999999988864 6899988887
Q ss_pred HHHHHHHhc
Q 023915 104 SSLIFHLGK 112 (275)
Q Consensus 104 ~~li~~~~~ 112 (275)
........+
T Consensus 231 ~~y~~~~~~ 239 (280)
T COG3629 231 ALYEEILRQ 239 (280)
T ss_pred HHHHHHhcc
Confidence 777776443
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=2.3 Score=35.25 Aligned_cols=121 Identities=17% Similarity=0.062 Sum_probs=78.3
Q ss_pred HHhccCCHHHHHHHHHHHHhc--------------cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh--HHHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYS--------------KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP--AIKK 172 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 172 (275)
.|.+.|++..|..-|+..... -..+-..+++.+.-++.+.+++..|+..........+.. ..--
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 455666666666666553321 111223367778888889999999988888766532222 2223
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc-hhHHHHHHHHHHHhh
Q 023915 173 FASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER-EKKELLLKLLEWMTG 231 (275)
Q Consensus 173 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~-~~~~~a~~l~~~m~~ 231 (275)
=-.+|...|+++.|...|+.+++ +.|+....+.=|..+..+. ...+...++|..|-.
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678888999999999999988 4687776666555544332 334445778888854
No 229
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.32 E-value=0.0016 Score=46.13 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=21.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHH
Q 023915 73 KYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (275)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (275)
+.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444443333334444444444444444444444433
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.31 E-value=2.6 Score=34.96 Aligned_cols=162 Identities=9% Similarity=-0.042 Sum_probs=99.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHhc---cCCHHHHHHHHHHHHhccccccHHhHHHHH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKG---HQPEEELCSSLIFHLGK---MRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 142 (275)
..++-+|....+++...++.+.+...- +.-....-.....|+.+ .|+.++|+.++..+......+++.+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 355557889999999999999998641 11122233345556667 899999999999977777777777887766
Q ss_pred HHHHh---------ccchHHHHHHHHHhhcCCChhHH---HHHHHHHHhcCChh---HHHHHH---H-HHHHcCCC---C
Q 023915 143 HILIS---------GKLLKDAYVVVKDNSESISHPAI---KKFASAFVRLGNIN---LVNDVM---K-AIHATGYR---I 200 (275)
Q Consensus 143 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~---~a~~~~---~-~m~~~g~~---p 200 (275)
..|-. ...++.|+..|++--... +..| |...-......+++ +..++- . .+.+.|.. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 65542 224777888888754422 3322 22222222222222 222222 1 12223332 3
Q ss_pred ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 201 DQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 201 ~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
|-.-+.+++.+.+ -.|+.++|.+..+.|...
T Consensus 304 dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASV-LAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhc
Confidence 3345566777766 678999999999999876
No 231
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.14 E-value=1.4 Score=31.12 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=21.6
Q ss_pred hHHHHHHHHhccCC-HHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 102 LCSSLIFHLGKMRA-HSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 102 ~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
.|..++.+..+..- .-.+..+|+-|++.+.++++.-|..++.++.+.
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44455555444333 333444444444444444444455555444443
No 232
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.11 E-value=0.031 Score=39.55 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=46.1
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 80 (275)
+|..+.+.+.++.+..+++.+...+..-+....+.++..|++.+..++..++++. .+..-...++..|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3555666666666667777766655455566677777777777666666666551 111222345555555555
Q ss_pred HHHHHHHHHH
Q 023915 81 YILAYRTMVD 90 (275)
Q Consensus 81 ~~~a~~~~~~ 90 (275)
++.+.-++..
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.63 Score=41.42 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=73.4
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHH
Q 023915 62 SPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKI 141 (275)
Q Consensus 62 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 141 (275)
.-..-+.+--+.-+..-|+..+|.++-.+.+ .||...|-.=+.+++..+++++-+++-+... ++..|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3344455555666667777777777666654 6777777777777887777777655544332 13457777
Q ss_pred HHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHH
Q 023915 142 LHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVM 190 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 190 (275)
+.+|.+.|+.++|.+.+.+..... -...+|.+.|++.+|.++-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHH
Confidence 777888888887777776543321 4556777777777766654
No 234
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.07 E-value=2 Score=34.07 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=88.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHc-cC-CHHHHHHHHHHHH-HcCCCCCHHhHHHHHH
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYNTFHILIKYFCK-EK-MYILAYRTMVDMH-RKGHQPEEELCSSLIF 108 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~-~~-~~~~a~~~~~~m~-~~g~~~~~~~~~~li~ 108 (275)
|..|+. ++..+-+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+. ..|..++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666664 34456778888874433 3466777777777777766 32 2333333444443 3346777888888999
Q ss_pred HHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
.+++.+++.+-+++++..... +..-+...|..+|+.....|+..-..+++.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999999998876654 5666777899999999999998888888876
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.00 E-value=1 Score=35.16 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcc--ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-C----CChhHHHHHHHHHHhcCChhHH
Q 023915 114 RAHSEALSVYNMLRYSK--RSMCKALHEKILHILISGKLLKDAYVVVKDNSE-S----ISHPAIKKFASAFVRLGNINLV 186 (275)
Q Consensus 114 g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~~li~~~~~~~~~~~a 186 (275)
|++..|..-|....+.. .......+-.|-.++...|++++|..+|..+.. . ..|..+-.+.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 34555555555444431 111222333344444445555554444444332 1 1112333444444555555555
Q ss_pred HHHHHHHHH
Q 023915 187 NDVMKAIHA 195 (275)
Q Consensus 187 ~~~~~~m~~ 195 (275)
..+|.++.+
T Consensus 235 ~atl~qv~k 243 (262)
T COG1729 235 CATLQQVIK 243 (262)
T ss_pred HHHHHHHHH
Confidence 555555444
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=2.1 Score=35.40 Aligned_cols=122 Identities=7% Similarity=-0.057 Sum_probs=79.7
Q ss_pred HHHccCCHHHHHHHHHHHhhc-----CCC---------CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 39 AYCRTGDMESVMHVMRKLDEL-----AIS---------PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~-----g~~---------p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
.+.+.|++..|..-|+...+. +.. .-..+++.|.-++.+.+++..|++.-+..+..+ ++|+....
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 566778888888777764431 121 223467788888889999999998888888765 66777777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH-HHHHHHhccc-hHHHHHHHHHhhc
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK-ILHILISGKL-LKDAYVVVKDNSE 163 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~-~~~a~~~~~~~~~ 163 (275)
.=-.+|...|+++.|...|+.+.+.. |+....+. ++..--+... .+...++|..|-.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888899999999998887543 32233333 3333333333 2333556666544
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.84 E-value=1.3 Score=34.56 Aligned_cols=96 Identities=11% Similarity=-0.044 Sum_probs=74.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-ccc-cHHhHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGH--QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSM-CKALHEKIL 142 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~li 142 (275)
.|+.-+.. .+.|++..|.+.|....+..- ......+-.|..++...|+++.|..+|..+.+.- -.| .+...-.+-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 47776665 567789999999999987642 1223467779999999999999999999887652 222 234566777
Q ss_pred HHHHhccchHHHHHHHHHhhc
Q 023915 143 HILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~ 163 (275)
....+.|+.++|..+|++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 888899999999999999876
No 238
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.80 E-value=1.6 Score=30.76 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=80.8
Q ss_pred hcCcHHHHHHHHHHH--------HhcCCCCcHH--hHHHHHHHHHccCCHHHHHHHHHHHhhcC-----CCCChhhHHHH
Q 023915 7 RGGCFEEAKQLAGDF--------EAKYDKYDVV--LLNSMLCAYCRTGDMESVMHVMRKLDELA-----ISPDYNTFHIL 71 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m--------~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~l 71 (275)
+.|++-..++.|.+. .+.+..++.. ..|.++.-....+++...+.+++.+.--. -..+..+|.++
T Consensus 6 k~g~~~~nL~~w~~fi~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~i 85 (145)
T PF13762_consen 6 KLGNVLANLEVWKTFINSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHII 85 (145)
T ss_pred cCcchhhhHHHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHH
Confidence 344444445554443 3345555554 36888888888899999999988885321 12455679999
Q ss_pred HHHHHccCC-HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHH
Q 023915 72 IKYFCKEKM-YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (275)
Q Consensus 72 i~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (275)
+.+.+++.- ---+..+|+.|++.+.+++..-|..+|.++.+....+.
T Consensus 86 f~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 86 FKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 999988876 44578899999998899999999999999988644443
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.74 E-value=0.98 Score=35.77 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCChhhHHHHH
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHA-----TGYRIDQGIFHIAI 209 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~y~~li 209 (275)
++..++..+...|+.+.+.+.++++.. ..+.+.|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 455566666666777777776666554 44455677777777777777777777766655 36666666555444
Q ss_pred HH
Q 023915 210 AR 211 (275)
Q Consensus 210 ~~ 211 (275)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 240
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.59 E-value=2 Score=31.17 Aligned_cols=127 Identities=14% Similarity=0.076 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 14 AKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
..+.+..+...++.|+...|..+|+.+.+.|++. .+..+.+.++-||.......+-.+.. ....+.++=-+|..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 3456667778899999999999999999999875 45556677788888777666544443 33445555555553
Q ss_pred cCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHH
Q 023915 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 94 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
+= ...+..+++.+...|++-+|+++.+........| ...++.+..+.++...-
T Consensus 87 RL----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~----~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 87 RL----GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP----ARKFLEAAANSNDDQLF 139 (167)
T ss_pred Hh----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC----HHHHHHHHHHcCCHHHH
Confidence 20 0246778889999999999999988753221111 23456666555554433
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=6.2 Score=36.07 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=104.6
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcH--HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDV--VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 79 (275)
|+.+++...++-|+.+ .+..+..++. ...-.--+-+.+.|++++|..-|-+-... +.|+ .+|.-|....
T Consensus 341 L~iL~kK~ly~~Ai~L---Ak~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINL---AKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHH---HHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 3455666667777766 3333333332 12333344456789999999887665432 3332 4566677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHH
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
.+..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.-. .-....+..|.+.+-.++|..+-.
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHH
Confidence 777778888888888863 44566789999999999998877776544 22111 113445666666666666666555
Q ss_pred HhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 160 DNSESISHPAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 160 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
+... .+. .+--.+-..+++++|.+.+..+.
T Consensus 488 k~~~--he~---vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK--HEW---VLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc--CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence 4333 111 12222334566777776665543
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.34 E-value=1.7 Score=30.56 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=12.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
.|+.+|.+.++++.|...+++.++.
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444455555555555555554443
No 243
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.27 E-value=3.9 Score=33.40 Aligned_cols=190 Identities=12% Similarity=0.050 Sum_probs=115.6
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHH---HHHHccCCHHHHHHHHHHHhhcCCCCChhhHH-HHHHHHHccCC
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSML---CAYCRTGDMESVMHVMRKLDELAISPDYNTFH-ILIKYFCKEKM 80 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~~~~~ 80 (275)
+.-.|++.+|+.-|....+- |+..|-++. ..|...|+..-|+.=|+...+ ++||-..-. ---..+.+.|.
T Consensus 48 lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 34456666676666665543 333343333 345666776666666666655 557643211 11234668899
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHh------------HHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPE--EEL------------CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
++.|..=|+..++..-.-+ ... ....+..+.-.|+...|......+.+.. +-+...|..--.+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 9999999998886532111 111 1233444556688888888888776432 224446677778888
Q ss_pred hccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 023915 147 SGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG 203 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 203 (275)
..|.+..|+.=++.... .-+....--+-..+...|+.+.++...++..+ +.||..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 89999888877776544 22233444556667778888888877777665 346654
No 244
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.22 E-value=1.1 Score=28.98 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++|+..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555555556666666666666666666666666666666655
No 245
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.17 E-value=4.1 Score=34.49 Aligned_cols=132 Identities=12% Similarity=0.094 Sum_probs=86.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH--hc
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPE------EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI--SG 148 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~ 148 (275)
+.++.+.|..+|.+.-+.. ..+ ...-+.+++||.. .+.+.....+.+..+... ...|-.+..++. +.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHh
Confidence 6689999999999987542 222 2334567888775 456666666666654322 224556665554 56
Q ss_pred cchHHHHHHHHHhhcC--C-Chh-----------HH---HHHHHHHHhcCChhHHHHHHHHHHHc----CCCCChhhHHH
Q 023915 149 KLLKDAYVVVKDNSES--I-SHP-----------AI---KKFASAFVRLGNINLVNDVMKAIHAT----GYRIDQGIFHI 207 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~--~-~~~-----------~~---~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~y~~ 207 (275)
+.+..|.+.+....+. . .++ +| +..+..+...|++.++..+++.+... ....+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7788887777654442 1 111 11 34567788899999999999988875 34488889998
Q ss_pred HHHHHH
Q 023915 208 AIARYI 213 (275)
Q Consensus 208 li~~~~ 213 (275)
++-.+.
T Consensus 173 ~vlmls 178 (549)
T PF07079_consen 173 AVLMLS 178 (549)
T ss_pred HHHHHh
Confidence 776553
No 246
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=0.69 Score=36.97 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=56.8
Q ss_pred cccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh-----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 023915 132 SMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP-----AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 132 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
+.+..+....+..-....+++++...+-++...+... +..+.++.+. .-+.++++-++..=.+.|+-||.++++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 3333344444444444555666666555554433221 2223333333 335567777776666778888888888
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 207 IAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 207 ~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
.+|+.+. +.+++.+|..+...|...
T Consensus 140 ~l~D~fl-k~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFL-KKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHH-hcccHHHHHHHHHHHHHH
Confidence 8888877 556666677766666543
No 247
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.07 E-value=1.1 Score=29.33 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 48 SVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 48 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
+..+-++.+....+.|+.....+.+++|.+.+|+..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555556666666777777777777777777777777777777664
No 248
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.06 E-value=3.7 Score=32.60 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHh-ccccccHHhHHHHHHHHHhcc--chHHHHHHHHHhh----cCCChhHHHHHHHHHHhcCChhHHHHH
Q 023915 117 SEALSVYNMLRY-SKRSMCKALHEKILHILISGK--LLKDAYVVVKDNS----ESISHPAIKKFASAFVRLGNINLVNDV 189 (275)
Q Consensus 117 ~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~ 189 (275)
.+|+++|+...- ..+-.++.+...+++...... ....-.++.+-+. ...+++....++..++..++|.+..++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Confidence 445555542221 234445666667777766522 2222233333332 245555777888888888888888888
Q ss_pred HHHHHHc-CCCCChhhHHHHHHHHHHhchhHHHHHHHHHH-----HhhCCCCCChhhHHHHHHHHHHh
Q 023915 190 MKAIHAT-GYRIDQGIFHIAIARYIAEREKKELLLKLLEW-----MTGQGYVVDSSTRNLILKNSHLF 251 (275)
Q Consensus 190 ~~~m~~~-g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~-----m~~~~~~p~~~t~~~li~~~~~~ 251 (275)
++..... +..-|...|..+|+... ..|+..-..++.++ +++.|+..+...-..|-+.+.+.
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~-~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIV-ESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHH-HcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 8776654 55567778888888865 66776655555542 34556666666666666555443
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=1.7 Score=38.89 Aligned_cols=117 Identities=9% Similarity=0.001 Sum_probs=91.2
Q ss_pred CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 25 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
|....--+.+--+.-+..-|+..+|.++-.+.+- ||...|--=+.+++..++|++-+++-+.++ ++.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 3334445667777888889999999999888765 999999999999999999988665544432 256788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
-.+.+|.+.|+.++|.+.+..... +.-.+.+|.+.|++.+|.++--+
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 899999999999999999876531 12577888999998888776554
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.01 E-value=0.28 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 023915 68 FHILIKYFCKEKMYILAYRTMVD 90 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~ 90 (275)
|+.|-..|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
No 251
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.97 E-value=6.4 Score=35.06 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=77.3
Q ss_pred HHHHHHHccCCHHHHHHHHH------HHHHcCCCC---CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH
Q 023915 70 ILIKYFCKEKMYILAYRTMV------DMHRKGHQP---EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK 140 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~------~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 140 (275)
+....+..+|+.++|..+.- -+.+-+-+. +..+...+-.-+.+...+.-|-++|..|.. -.+
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ks 778 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKS 778 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHH
Confidence 44455566777777655422 112222222 333455555555667778889999988752 356
Q ss_pred HHHHHHhccchHHHHHHHHHhhcCCChh------------HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 141 ILHILISGKLLKDAYVVVKDNSESISHP------------AIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
+++..+..++|++|..+-+...+-.+.. -|.-.-.+|-+.|+-.+|.++++++....
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 7888889999999999998876633221 12333467888999999999998876643
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.94 E-value=7.1 Score=37.15 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=99.5
Q ss_pred hcCcHHHHHHHHHHHHhc-----CCCCcH--HhHHHHHHHHHccC--CHHHHHHHHHHHh--hcC---CCCChhhHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAK-----YDKYDV--VLLNSMLCAYCRTG--DMESVMHVMRKLD--ELA---ISPDYNTFHILI 72 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~-----g~~p~~--~~~~~li~~~~~~g--~~~~a~~~~~~m~--~~g---~~p~~~t~~~li 72 (275)
...|..+-+-++++++.. ..+.|. .-|...+..+.+.| .++++..+.++=. ..+ .+|+...+..+.
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~ 942 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIY 942 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHH
Confidence 345667777777777632 112222 23555666666665 4566555543311 111 457777766666
Q ss_pred HHHH----ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 73 KYFC----KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 73 ~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
.+|+ ....++.|.-+|+..-+ ..-.+.+|-.+|++.+|+.+-.++.......- .+-..|+..+...
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~-~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELV-ILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHH-HHHHHHHHHHHHc
Confidence 5544 44666666655554321 23467777788888888888776653322221 1235677888888
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 023915 149 KLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
++.-+|-++..+....+. -.+..|++...|++|.++-..
T Consensus 1013 ~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 888888888887655432 234556666677777766543
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.94 E-value=2.2 Score=29.59 Aligned_cols=87 Identities=8% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH---HHHHhccCC
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL---IFHLGKMRA 115 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~ 115 (275)
+++..|+.+.|++.|.+...- .+-+...||.-..++.-.|+.++|+.=+++..+..-..+...+.+. -..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666655442 1223445666666666666666666666655543222222222222 223444555
Q ss_pred HHHHHHHHHHH
Q 023915 116 HSEALSVYNML 126 (275)
Q Consensus 116 ~~~a~~~~~~m 126 (275)
.+.|..=|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 55555544433
No 254
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.82 E-value=2.8 Score=30.61 Aligned_cols=123 Identities=8% Similarity=-0.042 Sum_probs=56.5
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHH--HHhccCCH
Q 023915 41 CRTGDMESVMHVMRKLDELAISPDYNT-FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE-LCSSLIF--HLGKMRAH 116 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~--~~~~~g~~ 116 (275)
++.++.++|+.-|.++.+.|...-... ---.-......|+...|...|.+.-.-.-.|-.. -...|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344555666666666655443211110 0011122345566666666666655433233221 1111111 23445666
Q ss_pred HHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 117 SEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 117 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
+....-.+.+...+.+.....-..|--+--+.|++..|..+|..+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66555555554444433333334444444556666666666666554
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.79 E-value=0.3 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999854
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=2.8 Score=30.16 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=27.4
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHccCCHHHHHHHHHHHHHc
Q 023915 41 CRTGDMESVMHVMRKLDELAISPDYNTFHIL-IKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
.+.++.+++..+++-++- +.|.......+ ..-+.+.|+|++|.++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566666666666655 33443332211 12245566666666666665543
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.63 E-value=3.1 Score=30.65 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=56.9
Q ss_pred hcCCCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 023915 23 AKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 23 ~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
....+-++ ..+..+..-|++.|+.+.|++.|.++++....|.. ..+-.+|....-.+++..+.....+....
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33344343 46889999999999999999999999987655544 45678888999999999999888887643
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.60 E-value=5.3 Score=33.23 Aligned_cols=161 Identities=10% Similarity=0.057 Sum_probs=97.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCC--CCChhh-HHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAI--SPDYNT-FHILIKYFCK---EKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t-~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
..++-+|-...+++.++++.+.+..... .++... --...-++.+ .|+.++|++++..+......++..+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3555568888999999999999987421 111111 1123334555 899999999999977777778888888777
Q ss_pred HHHhc---------cCCHHHHHHHHHHHHhcc-ccccHHhHHHHHHHHHhccchHH---HHHHH---HH-hhcCCC---h
Q 023915 108 FHLGK---------MRAHSEALSVYNMLRYSK-RSMCKALHEKILHILISGKLLKD---AYVVV---KD-NSESIS---H 167 (275)
Q Consensus 108 ~~~~~---------~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~---a~~~~---~~-~~~~~~---~ 167 (275)
..|-. ....++|...|.+--... ..-+..-+..++... ..+.+. ..++- .. ....++ .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~--g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA--GHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc--CCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 76643 223667777776543222 111111222233322 222222 22222 11 111111 1
Q ss_pred h---HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 168 P---AIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 168 ~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
. .+.+++.++.-.|+.++|.+..+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 5689999999999999999999999875
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.57 E-value=1.2 Score=28.85 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK 73 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 73 (275)
+.=++.+-++.+...++.|++...++.+++|-+.+++..|.++|+-.+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44466777778888899999999999999999999999999999987743 2124445665554
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.34 E-value=4.8 Score=32.11 Aligned_cols=211 Identities=15% Similarity=0.176 Sum_probs=117.4
Q ss_pred HccCCHHHHHHHHHHHhhc--CCCCChh------hHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCCCH----
Q 023915 41 CRTGDMESVMHVMRKLDEL--AISPDYN------TFHILIKYFCKEKMYILAYRTMVDMHRK--------GHQPEE---- 100 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~--g~~p~~~------t~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~~~~---- 100 (275)
.+.|+.+.|..++.+.... ...|+.. .|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777666542 2233322 3444444444444777776666665432 123333
Q ss_pred -HhHHHHHHHHhccCCHH---HHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC--hhHHHHHH
Q 023915 101 -ELCSSLIFHLGKMRAHS---EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS--HPAIKKFA 174 (275)
Q Consensus 101 -~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li 174 (275)
.+...++.+|...+..+ +|.++++.+......+ +.++-.-++.+.+.++.+.+.+.+..|....+ ...+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~-~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK-PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC-cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 45667777887777654 4555666665443332 23455566666668888899999988877544 34666666
Q ss_pred HHHHhc--CChhHHHHHHHHHHHcCCCCChh-hHH-HHHHHHH--Hh------chhHHHHHHHHHHHhh-CCCCCChhhH
Q 023915 175 SAFVRL--GNINLVNDVMKAIHATGYRIDQG-IFH-IAIARYI--AE------REKKELLLKLLEWMTG-QGYVVDSSTR 241 (275)
Q Consensus 175 ~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~-~y~-~li~~~~--~~------~~~~~~a~~l~~~m~~-~~~~p~~~t~ 241 (275)
..+... .....+...+..+....+.|... ... .++.... .. .++.+.+.++++...+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 655322 33455666666666555555553 111 1111111 01 1225556666665443 3556667777
Q ss_pred HHHHHHHHHhh
Q 023915 242 NLILKNSHLFG 252 (275)
Q Consensus 242 ~~li~~~~~~g 252 (275)
.++...+.+.|
T Consensus 243 ~a~~~LLW~~~ 253 (278)
T PF08631_consen 243 SAIHTLLWNKG 253 (278)
T ss_pred HHHHHHHHHHH
Confidence 77777666666
No 261
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.90 E-value=3.5 Score=29.63 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=64.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCC-CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc-CC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE-KM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-~~ 80 (275)
..-.+.++.+++..+++-+..-.+ .|...++...+. .+.|++.+|.++|+++...+ |...--..|+..|... ||
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 445677899999999999987432 233445555554 57899999999999987653 4333334444444433 33
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (275)
.+- ...-+++.+.+-.|+. ..++..+....+...|.
T Consensus 94 ~~W-r~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 94 PSW-RRYADEVLESGADPDA---RALVRALLARADLEPAH 129 (160)
T ss_pred hHH-HHHHHHHHhcCCChHH---HHHHHHHHHhccccchh
Confidence 322 2233445555544443 33455554444444433
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.75 E-value=9.7 Score=34.34 Aligned_cols=182 Identities=9% Similarity=-0.043 Sum_probs=89.1
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh-cCCCCChh--------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYN--------TFHILIKYFCKEKMYILAYRTMVDMHRKGHQ 97 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~--------t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 97 (275)
.|....|..|-......-.++.|...|-+... .|++.-.. .-.+=|.+ --|.+++|+++|-+|.++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 57778888888877777777888777766554 23321111 11111222 23778888888887765432
Q ss_pred CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHHHHHHhccchHHHHHHHHH----------------
Q 023915 98 PEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKILHILISGKLLKDAYVVVKD---------------- 160 (275)
Q Consensus 98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------------- 160 (275)
.|..+.+.|++-.+.++++.--.. ....-...|+.+-..+.....|++|.+.+..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 344444455554444433320000 0011112233333333333333333333322
Q ss_pred ---hhc-----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHH
Q 023915 161 ---NSE-----SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWM 229 (275)
Q Consensus 161 ---~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m 229 (275)
+.. .-+.+..-.+..++.+.|.-++|.+.+-. .+. | .+.++.+ .+.++|.+|.++-+..
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tC-v~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTC-VELNQWGEAVELAQRF 904 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHH-HHHHHHHHHHHHHHhc
Confidence 111 11122344566677777777766665522 121 2 1234454 3677787787776654
No 263
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.33 E-value=2.9 Score=27.47 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=45.6
Q ss_pred HHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH
Q 023915 68 FHILIKYFCKEKMYI--LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (275)
Q Consensus 68 ~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 144 (275)
|++--..|....+.| ...+-++.+....+.|++....+.+.+|.|.+++..|.++|+.++.+-.. ....|..+++.
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHHH
Confidence 333333444444333 34556666667778899999999999999999999999999988754222 22256666554
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.31 E-value=0.66 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
+|..+-.++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555544
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=7.1 Score=31.84 Aligned_cols=147 Identities=10% Similarity=-0.045 Sum_probs=85.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhccCCHHH
Q 023915 43 TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSE 118 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~ 118 (275)
.|++.+|-..++++.+. .+.|...++..=.+|.-.|+.+.....++.+... ..||. +.-..+--++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555666666666553 5556666777777778888887777777777632 12332 222333344456788888
Q ss_pred HHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh------hHHHHHHHHHHhcCChhHHHHHHHH
Q 023915 119 ALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH------PAIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 119 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
|.+.-++..+-+... .-...+.-..+-..+++.++.++..+-...-.. ..|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 887777655443322 222334555555677788887777664442211 1232233344555778888888865
No 266
>PRK15331 chaperone protein SicA; Provisional
Probab=91.06 E-value=4.5 Score=29.25 Aligned_cols=94 Identities=7% Similarity=-0.183 Sum_probs=66.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
...-+...|++++|..+|.-+...+ ..+..-+..|-.++-..+++++|...|...-.... -++..+-..-.++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3444667899999999999988754 23333455666677778999999999986554321 112223345667888999
Q ss_pred hHHHHHHHHHhhcCCC
Q 023915 151 LKDAYVVVKDNSESIS 166 (275)
Q Consensus 151 ~~~a~~~~~~~~~~~~ 166 (275)
.+.|...|....+.+.
T Consensus 121 ~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999998777543
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.87 E-value=12 Score=33.79 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=94.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHH----------------HhhcCCCCChhhHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRK----------------LDELAISPDYNTFHIL 71 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----------------m~~~g~~p~~~t~~~l 71 (275)
-|.+++|.+++-+|.+.++ .|....+.|++-.+.++++. |-+ .-.+...|...
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~--~fa~~~~We~A 815 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE--TFAEMMEWEEA 815 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4778888888887776533 24444455555555444432 111 00122234444
Q ss_pred HHHHHccCCHHHHHHH------HHHHH--HcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH
Q 023915 72 IKYFCKEKMYILAYRT------MVDMH--RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~------~~~m~--~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 143 (275)
...|.+.|+.+.-.+. |.++. ...++-+....-.+.+++.+.|..++|.+.|-.-. . -.+.+.
T Consensus 816 ~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~-----pkaAv~ 886 (1189)
T KOG2041|consen 816 AKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----L-----PKAAVH 886 (1189)
T ss_pred HHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----C-----cHHHHH
Confidence 4445555554442222 22221 12234455566677888888888888887765422 1 135677
Q ss_pred HHHhccchHHHHHHHHHhhcCCChh-------------HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 144 ILISGKLLKDAYVVVKDNSESISHP-------------AIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
+|....+|.+|.++-+...-..... ..---|..+.+.|++-+|.+++.+|.+.
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 8888889999888877533211111 0111356677778777788888777663
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.81 E-value=1.4 Score=23.72 Aligned_cols=25 Identities=12% Similarity=-0.098 Sum_probs=11.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
..+...|.+.|++++|.++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.52 E-value=4.4 Score=28.16 Aligned_cols=91 Identities=9% Similarity=-0.140 Sum_probs=63.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-cccccHHhHHHHH---HHHHhcc
Q 023915 74 YFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKIL---HILISGK 149 (275)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li---~~~~~~~ 149 (275)
+.+..|+++.|++.|.+.... .+-+...||.-..++.-.|+.++|+.=+++..+- |.. +.....+.+ ..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467789999999999988754 2446678999999999999999998888876653 333 333333322 2455678
Q ss_pred chHHHHHHHHHhhcCCC
Q 023915 150 LLKDAYVVVKDNSESIS 166 (275)
Q Consensus 150 ~~~~a~~~~~~~~~~~~ 166 (275)
+.+.|..=|+....-++
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888876555443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.50 E-value=1.4 Score=23.77 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
.+..+...|...|++++|.++|+...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666677777777777777776664
No 271
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=90.17 E-value=2.8 Score=35.02 Aligned_cols=126 Identities=7% Similarity=-0.110 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH----hccc-cccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCCh----hH
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLR----YSKR-SMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISH----PA 169 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~----~~ 169 (275)
|..|-..|.-.|+++.|....+.-. +-|. ..-...++.+-.+++-.|+++.|.+.++.-.. .++. ..
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3344444445577777776554321 1122 22234666777788888888888888875321 1111 14
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH----Hc-CCCCChhhHHHHHHHHHHhchhHHHHHHHHHHH
Q 023915 170 IKKFASAFVRLGNINLVNDVMKAIH----AT-GYRIDQGIFHIAIARYIAEREKKELLLKLLEWM 229 (275)
Q Consensus 170 ~~~li~~~~~~~~~~~a~~~~~~m~----~~-g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m 229 (275)
.-+|-+.|.-...+++|+..+..-. +. ...-....|++|-.+|- ..|.-++|+.+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~-alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN-ALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 4466677777777888877765421 11 11223457777877775 455556666555443
No 272
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=90.02 E-value=6.4 Score=29.29 Aligned_cols=168 Identities=8% Similarity=0.044 Sum_probs=87.3
Q ss_pred cCCCCcHHhHHHHHHHHHccCC----HHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 24 KYDKYDVVLLNSMLCAYCRTGD----MESVMHVMRKLDELAISPDY----NTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 24 ~g~~p~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
.|..++...+|.++..+.+..- .+-++.+=.+....+..++- ...-.=+..|-..|||.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 5777888888888877766543 33344443333344444433 233344456666777776655555544322
Q ss_pred CCCCH-HhHHH-HHHHHhccC--CHHHHHHHHHHHHhccccc-------cHHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 96 HQPEE-ELCSS-LIFHLGKMR--AHSEALSVYNMLRYSKRSM-------CKALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 96 ~~~~~-~~~~~-li~~~~~~g--~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
-.++. ..+.. +..++.+.- +..--+-.|.+-....++- -..+--+++-.|-+..+|.++.++++.+.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 11111 111221111 1100111122222111111 1123345667778888888888888876531
Q ss_pred ---------CCh--------hHHHHHHHHHHhcCChhHHHHHHH
Q 023915 165 ---------ISH--------PAIKKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 165 ---------~~~--------~~~~~li~~~~~~~~~~~a~~~~~ 191 (275)
... ...|.....+.++|+++.|..+++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 111 145777889999999999999976
No 273
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=9.4 Score=30.45 Aligned_cols=108 Identities=7% Similarity=0.002 Sum_probs=53.5
Q ss_pred cHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChh-HHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCChhh-HHH
Q 023915 134 CKALHEKILHILISGKLLKDAYVVVKDNSE-SISHP-AIKKFASAFVRL---GNINLVNDVMKAIHATGYRIDQGI-FHI 207 (275)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~-y~~ 207 (275)
+...|..|-..|...|+.+.|..-|.+... .++.+ .+..+..++... ....++..+|++.... .|+... -.-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHH
Confidence 344566666666666666666666666544 22222 333333333222 2344666666666553 243332 222
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 023915 208 AIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILK 246 (275)
Q Consensus 208 li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~ 246 (275)
|-..+. ..|++.+|...|+.|.+. -|....+..+|+
T Consensus 233 LA~~af-e~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAF-EQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHH-HcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 333333 556666666666666653 233334444443
No 274
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=9.5 Score=30.47 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=25.5
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
..|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+-
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 445555555555555543222 23344445555555555555555555543
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.38 E-value=7.1 Score=28.90 Aligned_cols=220 Identities=15% Similarity=0.059 Sum_probs=154.2
Q ss_pred CcHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 9 GCFEEAKQLAGDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4556666666666654332 14678888888999999999999888887653 344555667777788888888999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHH-HHhccCCHHHHHHHHHHHHhccc--cccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 87 TMVDMHRKGHQPEEELCSSLIF-HLGKMRAHSEALSVYNMLRYSKR--SMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
.+.........+. ........ .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999887554442 22223333 78899999999999998854222 12333444455557788999999999998776
Q ss_pred CCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 164 SIS---HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID-QGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 164 ~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
... ...+..+-..+...+.++.+...+...... .|+ ...+..+...+. ..+..+.+...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 333 346777888888888999999999887774 343 344555555555 567788888888877654
No 276
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.31 E-value=1.1 Score=23.44 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=13.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
+++.|-..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
No 277
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=7.2 Score=34.38 Aligned_cols=100 Identities=6% Similarity=0.019 Sum_probs=61.2
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHH
Q 023915 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (275)
.+.|+.+.|.++..+. -+..-|..|-++..+.+++..|.+.|....+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3567777777765554 3345577777777777777777777766543 445666666666666555
Q ss_pred HHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 121 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
.+-..-...|.. |...-+|-..|+++++.+++.+-
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 554444443332 33344555667777777776653
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.13 E-value=5.3 Score=29.97 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc---cccccHHhHHHHHHHHHhc
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS---KRSMCKALHEKILHILISG 148 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~ 148 (275)
--.+.+.|| +.|.+.|-++...+.--++.....|...|. ..+.+++..++...... +-.+++..+.+|...+-+.
T Consensus 114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 334555565 557888888877765555555555555555 67888888888876642 3477888899999999999
Q ss_pred cchHHHHH
Q 023915 149 KLLKDAYV 156 (275)
Q Consensus 149 ~~~~~a~~ 156 (275)
++.+.|.-
T Consensus 192 ~~~e~AYi 199 (203)
T PF11207_consen 192 KNYEQAYI 199 (203)
T ss_pred cchhhhhh
Confidence 99988863
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.93 E-value=1.2 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555556666666666666665554
No 280
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.79 E-value=9.6 Score=29.66 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHhhc-------CCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCChhhHH
Q 023915 138 HEKILHILISGKLLKDAYVVVKDNSE-------SISH-PAIKKFASAFVRLGNINLVNDVMKAIHAT---GYRIDQGIFH 206 (275)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~y~ 206 (275)
+..+-+.+++...+++|-..+.+... -+++ ..|-..|-.|.-..++..|...++.-.+. .-.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 44444555556666555444433221 1111 12444555566666777777777663332 1122345677
Q ss_pred HHHHHHHHhchhHHHHHHHH
Q 023915 207 IAIARYIAEREKKELLLKLL 226 (275)
Q Consensus 207 ~li~~~~~~~~~~~~a~~l~ 226 (275)
.||.+| ..|+.+++.++.
T Consensus 233 nLL~ay--d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY--DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh--ccCCHHHHHHHH
Confidence 777776 456666665544
No 281
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.64 E-value=2.1 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 023915 204 IFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILK 246 (275)
Q Consensus 204 ~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~ 246 (275)
|...|+.+ .+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 5 TlGiL~~A--k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 5 TLGILLLA--KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred hHHHHHHH--HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44556655 255777778888888888888888877777765
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.60 E-value=15 Score=31.70 Aligned_cols=73 Identities=12% Similarity=-0.013 Sum_probs=45.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccc-cccHHhHHHHH
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMHRKGHQ-PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-SMCKALHEKIL 142 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li 142 (275)
.+...+.+.|+.++|.+.+.+|.+..-. -+......|+.++...+.+.++..++..-..... +.-...|++.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4455556778888888888888754311 1233566788888888888888888777643222 22334566544
No 283
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.53 E-value=6.5 Score=29.49 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHhccCCH
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK---GHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 116 (275)
.++.|+ +.|.+.|-.+...+.--|+...-.|...|. ..|.+++.+++.+..+. +-.+|+..+.+|...|.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444455 688889989888877656555555555555 67889999999988753 3367889999999999999999
Q ss_pred HHHH
Q 023915 117 SEAL 120 (275)
Q Consensus 117 ~~a~ 120 (275)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.43 E-value=1.5 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
|..+-..+.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555544
No 285
>PF13934 ELYS: Nuclear pore complex assembly
Probab=88.12 E-value=10 Score=29.21 Aligned_cols=70 Identities=9% Similarity=0.102 Sum_probs=30.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 023915 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFV 178 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 178 (275)
++.++...|+.+.|+.+++...-.... ...-..++.. ..++.+.+|+.+-+...+....+.+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 555555555555555555543211111 1111222222 444555555555555444333344444444444
No 286
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.85 E-value=8.8 Score=30.41 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=54.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 35 SMLCAYCRTGDMESVMHVMRKLDEL--AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 35 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
.=|.+++..+++.+++...-+-.+. .++|.+ ....|-.|+|.+.+..+.++-..=.+.--.-+...|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3467888888888877665555443 244443 444555577888888777776665543222223346666666654
Q ss_pred -----cCCHHHHHHHH
Q 023915 113 -----MRAHSEALSVY 123 (275)
Q Consensus 113 -----~g~~~~a~~~~ 123 (275)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888776
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.71 E-value=1.1 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVM 50 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~ 50 (275)
|...|+.+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777777777777777664
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.50 E-value=9.6 Score=28.16 Aligned_cols=187 Identities=13% Similarity=0.004 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHhccCCHHHHH
Q 023915 43 TGDMESVMHVMRKLDELAIS-PDYNTFHILIKYFCKEKMYILAYRTMVDMHRK-GHQPEEELCSSLIFHLGKMRAHSEAL 120 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (275)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666676776666654322 13566777778888888888888888877653 33445556777777777888888888
Q ss_pred HHHHHHHhccccccHHhHHHHHH-HHHhccchHHHHHHHHHhhcCCCh------hHHHHHHHHHHhcCChhHHHHHHHHH
Q 023915 121 SVYNMLRYSKRSMCKALHEKILH-ILISGKLLKDAYVVVKDNSESISH------PAIKKFASAFVRLGNINLVNDVMKAI 193 (275)
Q Consensus 121 ~~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m 193 (275)
+.+.........+.. ....... .+...|+++.|...+.+... ..+ ..+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 888887764444321 2222222 67888888888888888755 222 12333344466778888888888877
Q ss_pred HHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 194 HATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 194 ~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
...........+..+-..+. ..+.++.+...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALEL 231 (291)
T ss_pred HhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhh
Confidence 76421112455666665654 556677788888877654
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.28 E-value=15 Score=30.13 Aligned_cols=187 Identities=11% Similarity=0.056 Sum_probs=100.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---CCC-ChhhHHHHHHHHHcc
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA---ISP-DYNTFHILIKYFCKE 78 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p-~~~t~~~li~~~~~~ 78 (275)
.+.-+.|+++...+........ .++...|.++... +.++.+++....+...+.- +.+ ....|........+.
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4556778888866665555432 3355556655554 7889999888888776531 111 112233333333333
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc-----cCCHHH---HHHHHHHHHh--ccccccHHhHHHHHHHHHhc
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK-----MRAHSE---ALSVYNMLRY--SKRSMCKALHEKILHILISG 148 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-----~g~~~~---a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~ 148 (275)
..+.+..++.+-.... ..+......++..... ..+++. .+.+-..+.. ........++..+.+.+.+.
T Consensus 82 q~L~Elee~~~~~~~~--~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~ 159 (352)
T PF02259_consen 82 QQLVELEEIIELKSNL--SQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA 159 (352)
T ss_pred hHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence 2222222222222111 0001122222222211 111111 1111111111 12333445788889999999
Q ss_pred cchHHHHHHHHHhhcCC------ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 149 KLLKDAYVVVKDNSESI------SHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
|+++.|...+..+.... .+...-...+.+-..|+..+|...++....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999877643 444556667888888999999998888776
No 290
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.96 E-value=8.1 Score=29.49 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHH
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVD 90 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~ 90 (275)
+..|+.+.+.+..++|+.+.++-.+. +|+ ..+-..+++.++-.|+|++|..-++-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 34455555555556655555444332 232 22333555555666666655544443
No 291
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.06 E-value=7.7 Score=29.62 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
.+..+..+.+.+.+.+++...++-.+.++. +..+-..+++-+|-.|+|++|..-++-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344555566666666666666654433222 2234455666666677777666555543
No 292
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.05 E-value=14 Score=31.36 Aligned_cols=210 Identities=12% Similarity=-0.005 Sum_probs=100.7
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh--hHHHHHHHHHccC
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN--TFHILIKYFCKEK 79 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~ 79 (275)
..++.|+.+-+..++ +.|..|+... ..+.+...++.|+.+- .+.+.+.|..|+.. ...+.+...+..|
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 445667776555554 4677766543 3445556667777753 34445566656543 1234566667788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccchHHH
Q 023915 80 MYILAYRTMVDMHRKGHQPEEE---LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDA 154 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a 154 (275)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+-+. .+.+.|..++.. .-...+...+..|+.+-+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~----~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMK----LLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8876555443 34222111 1123334444556664433 334444443221 112334455567777766
Q ss_pred HHHHHHhhcCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 155 YVVVKDNSESISHP-AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI---FHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 155 ~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
..+++.-....... .-.+.+...+..|+.+ +.+.+.+.|..|+... ..+++...+ ..|+.+ +.+.+.
T Consensus 152 ~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~-~~~~~~----iv~~Ll 222 (413)
T PHA02875 152 ELLIDHKACLDIEDCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAI-ENNKID----IVRLFI 222 (413)
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHH-HcCCHH----HHHHHH
Confidence 66655422211011 0112233344456654 3344556676665432 123443223 456655 334444
Q ss_pred hCCCCCCh
Q 023915 231 GQGYVVDS 238 (275)
Q Consensus 231 ~~~~~p~~ 238 (275)
+.|..|+.
T Consensus 223 ~~gad~n~ 230 (413)
T PHA02875 223 KRGADCNI 230 (413)
T ss_pred HCCcCcch
Confidence 56666553
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.01 E-value=15 Score=28.73 Aligned_cols=205 Identities=13% Similarity=0.026 Sum_probs=107.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (275)
.|..--.+|-...++++|..-+.+..+ +..-+...| -..+..+.|..+.++|.+.. --+..|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 455555666667777777766555442 111121111 11233455555555555421 11235666777777
Q ss_pred ccCCHHHHHHHHHHHHh--ccccccH--HhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHH
Q 023915 112 KMRAHSEALSVYNMLRY--SKRSMCK--ALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVN 187 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~--~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 187 (275)
.+|.++.|-..++..-. .++.|+. ..|.--+...-..++...|.+ .|...-+.+.+..++++|-
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e------------l~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE------------LYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH------------HHHHhhhHhhhhHHhhHHH
Confidence 88887777666655432 1233322 122222222222333333333 3445567777788887776
Q ss_pred HHHHHHHHc----CCCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHHhhHHHHHHH
Q 023915 188 DVMKAIHAT----GYRIDQ-GIFHIAIARYIAEREKKELLLKLLEWMTG---QGYVVDSSTRNLILKNSHLFGRQLIADI 259 (275)
Q Consensus 188 ~~~~~m~~~----g~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m~~---~~~~p~~~t~~~li~~~~~~g~~~~~~~ 259 (275)
..+..-... .--|+. ..|...|-.|+ ...++..|.+.++.--+ ..-+-+..+...||.+|-....+....+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L-~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYL-YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHh-hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHH
Confidence 665432221 111222 23444444555 55788889999987433 3334567899999999966554444433
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.71 E-value=23 Score=30.70 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=44.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcccc-ccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYSKRS-MCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
.+-.++-+.|+.++|.+.|++|.+.... ........++.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3555666789999999999988764333 3444677889999999999999888888654
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.55 E-value=2 Score=21.26 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=14.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 296
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=85.40 E-value=18 Score=29.33 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=84.3
Q ss_pred HHHHHh-ccCCHHHHHHHHHHHHhccc----cccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhc
Q 023915 106 LIFHLG-KMRAHSEALSVYNMLRYSKR----SMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180 (275)
Q Consensus 106 li~~~~-~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 180 (275)
++...| ..+..+.|.+.|+.....+. .+++.....++...++.|..+.-..+++......++..-..++.+++..
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 344444 22235678888888776522 4566677778888888888777666666666666777788999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-HhchhHHHHHHHHH----HHhhCCCCCChhhHHHHHHHHHH
Q 023915 181 GNINLVNDVMKAIHATGYRIDQGIFHIAIARYI-AEREKKELLLKLLE----WMTGQGYVVDSSTRNLILKNSHL 250 (275)
Q Consensus 181 ~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~-~~~~~~~~a~~l~~----~m~~~~~~p~~~t~~~li~~~~~ 250 (275)
.+.+...++++.....+..++...+. ++.++. ....-.+.+.+.+. .+. ..+.++......++.++..
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~n~~~i~-~~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRY-VLAGLASSNPVGRDLAWEFFKENWDAII-KKFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHH-HHHHHH-CSTTCHHHHHHHHHHCHHHHH-CHC-TTSHCCHHHHHCCCT
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHH-HHHHHhcCChhhHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHhc
Confidence 99999999999888854233444444 444443 22121244555544 332 2344444466667765433
No 297
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=85.33 E-value=8.9 Score=28.32 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCCcH--Hh-----HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 023915 11 FEEAKQLAGDFEAKYDKYDV--VL-----LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~--~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 78 (275)
++.|+.+|+.+.+.-..|.. .. --..+..|.+.|.+++|.++++...+. |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 35566666666654222211 11 122334566666666666666666552 4444444444444433
No 298
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=85.25 E-value=2.5 Score=33.71 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=29.1
Q ss_pred CCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 61 ISPDYNT-FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 61 ~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
+.||..+ |+..|....+.||+++|++++++..+.|..--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4455555 4577777777777777777777777777655444443
No 299
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=20 Score=28.67 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=10.7
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 023915 172 KFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~ 191 (275)
.++..+.+.|.+.+|..+.+
T Consensus 130 Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 130 KLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHhcccHHHHHHHHH
Confidence 34555555555555555443
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.96 E-value=13 Score=26.46 Aligned_cols=19 Identities=21% Similarity=-0.024 Sum_probs=9.2
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 023915 111 GKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~ 129 (275)
...|++++|..+|+++...
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555554433
No 301
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=83.87 E-value=4.9 Score=23.72 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
.++.+.++++.++.. ..|-.-.-.+|.++...|++++|.+...++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555543 33555555677777777777777777766654
No 302
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.81 E-value=4.1 Score=22.15 Aligned_cols=22 Identities=9% Similarity=-0.145 Sum_probs=10.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 023915 107 IFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~ 128 (275)
-.+|...|+.+.|.++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555554443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.78 E-value=3.7 Score=20.30 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=16.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
+|..+...|...|+++.|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666554
No 304
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.56 E-value=13 Score=26.21 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=47.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 75 FCKEKMYILAYRTMVDMHRKGH--QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
..+.|+++.|...|+.+...=- +-...+--.++.+|.+.++++.|...+++..+.++.-...-|...+.+++.-..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3566777777777777765411 122345556777777888888888887777765544444455555555554443
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.51 E-value=45 Score=32.27 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=68.1
Q ss_pred CCCHHhHHHHHHHHh----ccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh--HH
Q 023915 97 QPEEELCSSLIFHLG----KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP--AI 170 (275)
Q Consensus 97 ~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 170 (275)
.|+...+..+..+|+ ..+.+++|.-.|+..- -....+.+|..+|+|.+|..+-.++....+.- +-
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G---------klekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCG---------KLEKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc---------cHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 455555555444443 3455566655555432 12345667777888888888877766544443 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 171 KKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 171 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
..|+.-+...++.-+|-++..+.... |. -.+..|| ++..|++|..+-..-.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~-ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLC-KAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHh-hHhHHHHHHHHHHhcc
Confidence 56777888888888888887665441 21 2233344 5566777776655443
No 306
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.32 E-value=21 Score=28.39 Aligned_cols=92 Identities=8% Similarity=0.015 Sum_probs=61.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH--
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL-- 145 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-- 145 (275)
...=|.+++..++|.+++...-+--+.--+.-......-|-.|.|.+++..+.++-..=.+....-....|..+..-|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 345578899999999987766554432223334466777788999999998888877555443322333466655554
Q ss_pred ---HhccchHHHHHHHH
Q 023915 146 ---ISGKLLKDAYVVVK 159 (275)
Q Consensus 146 ---~~~~~~~~a~~~~~ 159 (275)
.=.|.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 45799999998883
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.24 E-value=16 Score=26.91 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH-hHHHHH
Q 023915 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE-LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA-LHEKIL 142 (275)
Q Consensus 65 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li 142 (275)
..+|...++. .+.+..++|+.-|.++.+.|..--+. .--..-......|+...|...|+++-.....|... -...+-
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3445555543 56677788888888888776543222 22233344567788888888888876554444332 112222
Q ss_pred H--HHHhccchHHHHHHHHHhhcCCChh-H--HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 143 H--ILISGKLLKDAYVVVKDNSESISHP-A--IKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 143 ~--~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
. .++.+|.+++....++.+....++- + -..|--+-.+.|++.+|...|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2 3346777777777777665544432 2 235555666778888888888776664
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.18 E-value=24 Score=28.92 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=96.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC---C-CCHHhHHHHHHHHh
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGH---Q-PEEELCSSLIFHLG 111 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~-~~~~~~~~li~~~~ 111 (275)
...+..+.|+++...+....... -.|+...|.++... +.++.+.+....+.....-. . .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~--~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE--DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC--CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34677888999986666555543 22456666666554 88999999888888764311 1 11223333333333
Q ss_pred ccCCHHHHHHHHHHHHhccc-cc----cHHhHHHHHHHHHhccchHHHHHHHH---Hhhc-----CCChhHHHHHHHHHH
Q 023915 112 KMRAHSEALSVYNMLRYSKR-SM----CKALHEKILHILISGKLLKDAYVVVK---DNSE-----SISHPAIKKFASAFV 178 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~---~~~~-----~~~~~~~~~li~~~~ 178 (275)
+...+.+..++.+-...... .. -...|..-+... .++++.-..++. .+.. .....++..+...+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 33333333333332211100 00 001122222111 122222111111 1111 122236778899999
Q ss_pred hcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 179 RLGNINLVNDVMKAIHATGYRI---DQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~g~~p---~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
+.|+++.|...+..+...+..+ +....-.-.+.+. ..|+.++|...+++...
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 9999999999999888754211 1222222223333 34666678888877766
No 309
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.49 E-value=5.5 Score=24.80 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=22.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCC-h-hhHHHHHHHHHccCCHHHHHHH
Q 023915 42 RTGDMESVMHVMRKLDELAISPD-Y-NTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 42 ~~g~~~~a~~~~~~m~~~g~~p~-~-~t~~~li~~~~~~~~~~~a~~~ 87 (275)
...+.++|+..|....+.-..|. . .++..++.+|+..|+++.++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655554322221 1 2445556666666666555443
No 310
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=82.09 E-value=13 Score=27.48 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 023915 174 ASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 174 i~~~~~~~~~~~a~~~~~~m~~ 195 (275)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3455556666666666655544
No 311
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=81.92 E-value=9.5 Score=34.15 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=54.2
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHccCCHHH------HHHHHHHHhhcCCCCChhhHHHHH
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAK--YDKYDVVLLNSMLCAYCRTGDMES------VMHVMRKLDELAISPDYNTFHILI 72 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~t~~~li 72 (275)
|+.+|..+|++.++.++++.+... |-+.-...||..|+.+.+.|.++- |.++++. .-+.-|..||..++
T Consensus 34 l~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all~ 110 (1117)
T COG5108 34 LFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHHH
Confidence 467899999999999999988763 444556778999999999997642 3333333 33667778888888
Q ss_pred HHHHcc
Q 023915 73 KYFCKE 78 (275)
Q Consensus 73 ~~~~~~ 78 (275)
.+-...
T Consensus 111 ~~sln~ 116 (1117)
T COG5108 111 QASLNP 116 (1117)
T ss_pred HhhcCh
Confidence 776554
No 312
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.91 E-value=30 Score=29.11 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=46.4
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~ 85 (275)
-.|+.+.|.+-|+-|... +..-..-...|.-..-+.|..+.|...-+..-. .-|. ...+.+++...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHH
Confidence 346667777777766541 010111122233333345555555554444332 2233 234567777777777777777
Q ss_pred HHHHHHHHcC-CCCCH
Q 023915 86 RTMVDMHRKG-HQPEE 100 (275)
Q Consensus 86 ~~~~~m~~~g-~~~~~ 100 (275)
++.+.-++.. +.++.
T Consensus 209 kLvd~~~~~~vie~~~ 224 (531)
T COG3898 209 KLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHHHHHHHHhhchhh
Confidence 7777665432 34443
No 313
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.66 E-value=26 Score=29.62 Aligned_cols=210 Identities=11% Similarity=0.058 Sum_probs=104.0
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHhcc
Q 023915 38 CAYCRTGDMESVMHVMRKLDELAISPDYNT--FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE--LCSSLIFHLGKM 113 (275)
Q Consensus 38 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~ 113 (275)
...++.|+.+-+. .+.+.|..|+... ..+.+..+++.|+.+ +.+.+.+.|..|+.. ...+.+...++.
T Consensus 7 ~~A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3345567765544 4445677776543 335566667778876 445556677666543 223445566677
Q ss_pred CCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCChhHHHHHHHH
Q 023915 114 RAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 114 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
|+.+.+..+++.-.......+... ...+...+..|+.+-+..+++.-.....+. .-.+.+...+..|+.+.+..+
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L--- 154 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL--- 154 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH---
Confidence 888877666653211100001111 123344456677765555555422211111 112344555567776655444
Q ss_pred HHHcCCCCC---hhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhH---HHHHHHHHHhh-HHHHHHHHhccCC
Q 023915 193 IHATGYRID---QGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTR---NLILKNSHLFG-RQLIADILSKQHM 265 (275)
Q Consensus 193 m~~~g~~p~---~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~---~~li~~~~~~g-~~~~~~~~~~~~~ 265 (275)
.+.|..++ ..-.+.|..+ + ..|+.+ +.+.+.+.|..|+.... ..++...+..| .+....++.++.-
T Consensus 155 -l~~g~~~~~~d~~g~TpL~~A-~-~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad 227 (413)
T PHA02875 155 -IDHKACLDIEDCCGCTPLIIA-M-AKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227 (413)
T ss_pred -HhcCCCCCCCCCCCCCHHHHH-H-HcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence 44454443 3345556655 3 457665 34445566766654321 23444233444 4444444445544
Q ss_pred C
Q 023915 266 K 266 (275)
Q Consensus 266 ~ 266 (275)
+
T Consensus 228 ~ 228 (413)
T PHA02875 228 C 228 (413)
T ss_pred c
Confidence 3
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.21 E-value=17 Score=25.88 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 42 RTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 42 ~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
..++++++..+++.|+- +.|+. .+|...+ +.+.|+|++|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 46788888888888876 44544 3444444 567788888888888887654
No 315
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=80.62 E-value=7.7 Score=21.49 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
.+++..++++|.+.|+..+...|.
T Consensus 18 I~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred hhhHHHHHHHHHHcCcccCHHHHH
Confidence 333344444444444433333333
No 316
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.62 E-value=31 Score=28.41 Aligned_cols=149 Identities=11% Similarity=-0.051 Sum_probs=102.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHH----HHHHHHccCCHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI----LIKYFCKEKMYIL 83 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~----li~~~~~~~~~~~ 83 (275)
.|++.+|-..++.+... .+.|...++-.=++|.-.|+.+.....+++.... ..||...|.- ..-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 57788888888888875 3448888888889999999999999888887753 3355544433 2334456799999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc---c-ccccHHhHHHHHHHHHhccchHHHHHHHH
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS---K-RSMCKALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
|++.-++..+.+ +-|..+-.+....+-..|++.++.+++.+-... + ...+. .|=..--.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH-NyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH-NYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh-hhHHHHHhhhcccchhHHHHHHH
Confidence 998887766543 445566677777888889999999887764422 1 11111 12122234556688999999998
Q ss_pred H
Q 023915 160 D 160 (275)
Q Consensus 160 ~ 160 (275)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 6
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.51 E-value=3.1 Score=19.42 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=8.5
Q ss_pred HHHHHHccCCHHHHHHHH
Q 023915 36 MLCAYCRTGDMESVMHVM 53 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~ 53 (275)
+-.++...|++++|.+++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444445555554444
No 318
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.37 E-value=16 Score=25.15 Aligned_cols=60 Identities=5% Similarity=0.084 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 144 (275)
..+.++.+....+.|++.....-+.+|.+.+++..|..+|+-+..+ ..+....|-.+++-
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 3445556666667777777777777777777777777777766533 22223345555544
No 319
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=80.08 E-value=11 Score=26.71 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
.+.+.+.+.|++++. --..+++.+...++.-.|.++++++...++..+..|.-..++.+...|
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344556667766654 334566666666666778888888877766666555444455555444
No 320
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=79.54 E-value=44 Score=30.30 Aligned_cols=47 Identities=4% Similarity=-0.028 Sum_probs=26.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHhccCCH
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMHRKG--HQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~ 116 (275)
+|+.+|...|++-.+.++++...... -+.=...||..|..+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666666666666665432 122223455556666666554
No 321
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=79.17 E-value=4.3 Score=32.44 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCCcHHh-HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 023915 26 DKYDVVL-LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI 72 (275)
Q Consensus 26 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 72 (275)
+.|+..+ ||..|....+.||+++|+.+++|.++.|+.--..||-..+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3456655 6899999999999999999999999999876666665444
No 322
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=78.81 E-value=27 Score=26.79 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=28.9
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC---ChhhHH--HHHHHHHccCCHHHHHHHHHHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---DYNTFH--ILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~--~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
.+...-+|.||--|.-...+.+|-+.| ..+.|+.| |..+++ .-|......|+++.|....+++-
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 334444555554444444444444444 22344444 222222 34444555555555555555543
No 323
>PRK14700 recombination factor protein RarA; Provisional
Probab=78.67 E-value=33 Score=27.67 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=48.3
Q ss_pred CCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc-----C--CC--------------C--ChhhHHHHHHHHHcc---C
Q 023915 26 DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-----A--IS--------------P--DYNTFHILIKYFCKE---K 79 (275)
Q Consensus 26 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~--------------p--~~~t~~~li~~~~~~---~ 79 (275)
+..+......++.. ..||...|+..++.+... + +. - +...+--+|+++.|+ .
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGS 140 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGT 140 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcC
Confidence 34455555555554 357777777777664321 0 00 0 111223345555444 5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (275)
|+|.|+-.+..|.+.|..|....-..++.++-..|
T Consensus 141 DpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 141 DPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 66777777777777776666666666666666555
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.66 E-value=5.9 Score=21.53 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=13.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 325
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=78.48 E-value=30 Score=27.10 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=87.7
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHhHHHHH
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRK-GHQPEEELCSSLI 107 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li 107 (275)
..|+.-+..+ +.|++++|.+.|+.+.+.- ..| ...+--.++.++-+.++++.|...+++.... +-.|| .-|-.-|
T Consensus 36 ~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 3455544443 5677777777777776431 111 2334445666677777777777777776543 23333 2344444
Q ss_pred HHHhcc-------CCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhc
Q 023915 108 FHLGKM-------RAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180 (275)
Q Consensus 108 ~~~~~~-------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 180 (275)
.+++.. .+...+..-+..+. .+|.-|=.+.-..+|...+........ ..--.+.+.|.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~LA-~~Em~IaryY~kr 180 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDALA-GHEMAIARYYLKR 180 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 444321 12222222222221 112222122222222222222111100 0112345677777
Q ss_pred CChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 181 GNINLVNDVMKAIHATGYRIDQG---IFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 181 ~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
|.+..|..=++.|.+. .+-+.. ..-.+..+|. ..|-.++|.+.-.-+..
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~-~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYY-ALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHH-HhCChHHHHHHHHHHHh
Confidence 8887777777777775 222222 3344555554 45666666665555543
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.32 E-value=17 Score=24.00 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
+...|++++|+.+.+.+ ..||...|-+|.. .+.|-.+....-+.+|-..|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34445555555554443 2355554444432 23444444444444444433
No 327
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.59 E-value=18 Score=23.90 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=32.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 175 SAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
..+...|+++.|..+.+.+ ..||...|-+|-.. +.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~---rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW---RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH---hhccHHHHHHHHHHHHhCC
Confidence 4555667777777765544 35777777666543 4466665666666666555
No 328
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.33 E-value=3 Score=28.93 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 023915 78 EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (275)
.|.-..|-.+|..|++.|-+||. |+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34445577788888888877773 66666543
No 329
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=77.11 E-value=29 Score=29.37 Aligned_cols=127 Identities=13% Similarity=-0.066 Sum_probs=86.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH----HcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHh-----ccccccHHhH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMH----RKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALH 138 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~----~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 138 (275)
..|-+.|.-.|+++.|+...+.-+ +.|-.. ...+++.+-.++.-.|+++.|.+.|+.-.. ..........
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 333334445689999988777643 233222 235788899999999999999998875432 2233334455
Q ss_pred HHHHHHHHhccchHHHHHHHHHhhc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 139 EKILHILISGKLLKDAYVVVKDNSE--------SISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
-++-.+|.-...++.|+..+.+... .+....+-+|-.+|...|..++|......-.+
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5677778778888999888876432 23334778888999999999988887765444
No 330
>PRK11906 transcriptional regulator; Provisional
Probab=76.95 E-value=48 Score=28.56 Aligned_cols=115 Identities=8% Similarity=0.013 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHHHHHH
Q 023915 44 GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSV 122 (275)
Q Consensus 44 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~ 122 (275)
....+|.++-+...+.+ .-|......+-.+..-.++.+.|..+|++.... .||. .+|...-..+.-.|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556666666666532 133444445555556667788888888887764 4553 3454444555567888888888
Q ss_pred HHH-HHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 123 YNM-LRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 123 ~~~-m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
++. +.-.+...........++.|+.+ .+++|+.++-+-.
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 887 44444444444444455566555 4566666665433
No 331
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.34 E-value=34 Score=26.60 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=9.9
Q ss_pred HccCCHHHHHHHHHHH
Q 023915 41 CRTGDMESVMHVMRKL 56 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m 56 (275)
.-.+++++|-++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3345677777776654
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.23 E-value=38 Score=27.04 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=122.2
Q ss_pred hhhcCcHHHHHHHHHHHHhcC--CCCcH------HhHHHHHHHHHccCCHHHHHHHHHHHhhc--------CCCCCh---
Q 023915 5 FCRGGCFEEAKQLAGDFEAKY--DKYDV------VLLNSMLCAYCRTGDMESVMHVMRKLDEL--------AISPDY--- 65 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~--- 65 (275)
..+.|+++.|.-++......- ..|+. ..||.=.+.+.+..+++.|...+++..+- ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999888633 33332 34666666665554777776666554432 233443
Q ss_pred --hhHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHH
Q 023915 66 --NTFHILIKYFCKEKMYIL---AYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE 139 (275)
Q Consensus 66 --~t~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 139 (275)
.+...++.+|...+..+. |..+++.+... -|+ +..+..-+..+.+.++.+.+.+++..|...-.-+ ...+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHH
Confidence 467788888888877665 55555555432 233 4456667777777999999999999998763322 23455
Q ss_pred HHHHHH---HhccchHHHHHHHHHhh-cC--CChhHH-H-HHHH---HHHhcC------ChhHHHHHHHHHHHc-CCCCC
Q 023915 140 KILHIL---ISGKLLKDAYVVVKDNS-ES--ISHPAI-K-KFAS---AFVRLG------NINLVNDVMKAIHAT-GYRID 201 (275)
Q Consensus 140 ~li~~~---~~~~~~~~a~~~~~~~~-~~--~~~~~~-~-~li~---~~~~~~------~~~~a~~~~~~m~~~-g~~p~ 201 (275)
.++..+ ..... +.|...+..+. .. +.+..+ . .++. ...+.+ +++.+.+++...... +.+.+
T Consensus 160 ~~l~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555544 44333 34444444432 22 222112 1 1111 111211 245555556543332 33344
Q ss_pred hhhHHHHHHHHH------HhchhHHHHHHHHHH
Q 023915 202 QGIFHIAIARYI------AEREKKELLLKLLEW 228 (275)
Q Consensus 202 ~~~y~~li~~~~------~~~~~~~~a~~l~~~ 228 (275)
..+-.++...+. -+.++++.|.++|+-
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 443322222211 146888889888874
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.49 E-value=13 Score=23.16 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=27.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC-H-HhHHHHHHHHhccCCHHHHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPE-E-ELCSSLIFHLGKMRAHSEALSV 122 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~-~-~~~~~li~~~~~~g~~~~a~~~ 122 (275)
..++.+.|+..|....+.-..|. . .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777665433222 1 3566677777777777666554
No 334
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=74.45 E-value=15 Score=21.65 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=26.3
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-----ccCCHHHHHHHH
Q 023915 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFC-----KEKMYILAYRTM 88 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-----~~~~~~~a~~~~ 88 (275)
...|++-+|.++++++=...-.|....+..+|.... +.|+.+.|..++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 346777777777777654333344555556665433 456666665543
No 335
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.56 E-value=27 Score=24.07 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHH
Q 023915 185 LVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~ 228 (275)
.+.++|..|...|+--....|-.--..++...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888888776655544333333344466888888887764
No 336
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.54 E-value=83 Score=29.75 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=69.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHccCCH--HHHHHHHHHHHHcCCCCCHHhHH--
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELA---ISPDYNTFHILIKYFCKEKMY--ILAYRTMVDMHRKGHQPEEELCS-- 104 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~-- 104 (275)
-|..|+..|...|+.++|+++|.+..+.. ..--...+..++...-+.+.. +.++++-.......-.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888899999999999999998887632 111112233455555555544 55555444444322111111111
Q ss_pred ----------HHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 105 ----------SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 105 ----------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
.-+-.|......+-+...++.+.......+...++.++.-|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1334555666777778888888777666677777777777764
No 337
>PRK11906 transcriptional regulator; Provisional
Probab=73.25 E-value=60 Score=27.97 Aligned_cols=143 Identities=8% Similarity=0.062 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhh-cCCCCChh-hHHHHHHHHH---------ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 47 ESVMHVMRKLDE-LAISPDYN-TFHILIKYFC---------KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 47 ~~a~~~~~~m~~-~g~~p~~~-t~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
+.|+.+|.+... ..+.|+-. .|..+-..+. ...+..+|.++-+...+.+ +-|..+...+-.+..-.++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 566677777662 23556533 2222222211 1334556777777777665 5567777777777788888
Q ss_pred HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChh--HH-HHHHHHHHhcCChhHHHHHHH
Q 023915 116 HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SISHP--AI-KKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~-~~li~~~~~~~~~~~a~~~~~ 191 (275)
++.|...|++...-++.. ..+|-..-..+.-.|+.++|.+.+++... .|... .. ...+..|+-. .++.+..++-
T Consensus 354 ~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred hhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 999999999877554332 22344444455668999999999998544 33322 22 2223355544 4777777774
Q ss_pred H
Q 023915 192 A 192 (275)
Q Consensus 192 ~ 192 (275)
.
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 4
No 338
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=72.47 E-value=31 Score=27.94 Aligned_cols=69 Identities=9% Similarity=-0.023 Sum_probs=34.0
Q ss_pred HHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHH----------hcCChhHHHHHH
Q 023915 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFV----------RLGNINLVNDVM 190 (275)
Q Consensus 121 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~a~~~~ 190 (275)
++|+.++..++.|.-..|..+.-.+...=.+.+++.+|+.+...+.. |..++..|| -.|++....+++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--fd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--FDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--hHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 45555555555555555555555555555555555555554433222 333333333 246666666654
Q ss_pred H
Q 023915 191 K 191 (275)
Q Consensus 191 ~ 191 (275)
+
T Consensus 342 Q 342 (370)
T KOG4567|consen 342 Q 342 (370)
T ss_pred h
Confidence 3
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.31 E-value=76 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=16.5
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 76 (275)
+.-.|+++.|++++-+ ..+...|.+.+...+..|.
T Consensus 268 LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g 302 (613)
T PF04097_consen 268 LLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG 302 (613)
T ss_dssp HHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC
Confidence 3345666766666554 2234455555555554443
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.02 E-value=51 Score=26.61 Aligned_cols=157 Identities=12% Similarity=0.002 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH-------h-------------------ccccccH
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR-------Y-------------------SKRSMCK 135 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~-------------------~~~~~~~ 135 (275)
.+|+++|.-+.++.-+| .+-..++.++....+..+|...+.... . +++..+.
T Consensus 150 ~KA~ELFayLv~hkgk~--v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHKGKE--VTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhcCCc--ccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 56888888887653222 344667778877777777766655332 0 1233344
Q ss_pred HhHHHHHHHHHh-ccchHHHHHHHHHhhcCCC---------------hhHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 136 ALHEKILHILIS-GKLLKDAYVVVKDNSESIS---------------HPAI----KKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 136 ~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~---------------~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.-|-+.+...-. +..++++.+++........ ...| +...+.|..+|.+.+|.++.+....
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 445455544433 2346666666655432111 1133 4456789999999999999888777
Q ss_pred cCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh-----hCCCCCChhhHH
Q 023915 196 TGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT-----GQGYVVDSSTRN 242 (275)
Q Consensus 196 ~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~-----~~~~~p~~~t~~ 242 (275)
.+ +.+...+-.|+..+. ..|+--.+.+-++.+. +.|+..|...++
T Consensus 308 ld-pL~e~~nk~lm~~la-~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 308 LD-PLSEQDNKGLMASLA-TLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred cC-hhhhHHHHHHHHHHH-HhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 54 345667777887776 4454334776666664 347777765554
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.90 E-value=7.3 Score=18.80 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=7.2
Q ss_pred HhccCCHHHHHHHHHHH
Q 023915 110 LGKMRAHSEALSVYNML 126 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m 126 (275)
+.+.|+.++|.+.|+++
T Consensus 10 ~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 33344444444444443
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.87 E-value=23 Score=22.59 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchH
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 152 (275)
.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .|.. .|..+++++...|.-+
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchh
Confidence 344444444442 222223333333334455555555555544 2221 2444444444444433
No 343
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.69 E-value=28 Score=24.72 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC
Q 023915 52 VMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (275)
Q Consensus 52 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (275)
+...+++.|++++..- ..++..+...++.-.|..+++++.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344555565554432 2445555555555556666666666655555554444444444443
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.27 E-value=21 Score=29.34 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHH
Q 023915 40 YCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAY 85 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~ 85 (275)
|.++|++++|++.|..-.. +.| +.+++..-..+|.+...+..|+
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 4445555555555443322 334 4444444444444444444433
No 345
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=71.21 E-value=15 Score=22.97 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=34.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh---hHHHHHHHHHccCC
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCKEKM 80 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~ 80 (275)
..++.|+++-+..+++ .+...+. -+..+...+..|+. ++++.+.+.|..|+.. -++.+.. .+..|+
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCC
Confidence 3455666555555444 3333332 11233344455554 3444444455555543 2223333 344444
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 023915 81 YILAYRTMVDMHRKGHQPE 99 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~ 99 (275)
.+ +++.+.+.|..++
T Consensus 72 ~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LE----IVKLLLEHGADVN 86 (89)
T ss_dssp HH----HHHHHHHTTT-TT
T ss_pred HH----HHHHHHHcCCCCC
Confidence 33 4455555555554
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.90 E-value=32 Score=25.62 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=36.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHR-KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
...+.......+.+......+...+ ....|+..+|..++.++...|+.++|....+++..-
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333355555544444444332 224677777888888888888888887777776643
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.12 E-value=81 Score=28.18 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHH---HHccCCHHHHHHHHHHHhh-------cCCCCChhhHHHHHHHHHcc-
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCA---YCRTGDMESVMHVMRKLDE-------LAISPDYNTFHILIKYFCKE- 78 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~li~~~~~~- 78 (275)
....|.++++.....|.. .....-.++.. +....+++.|+..|....+ .|. .....-+-..|.+.
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCC
Confidence 356788888888776632 22222222222 4466788999999888876 452 23445555556553
Q ss_pred ---C-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc-cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH--hccch
Q 023915 79 ---K-MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK-MRAHSEALSVYNMLRYSKRSMCKALHEKILHILI--SGKLL 151 (275)
Q Consensus 79 ---~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~ 151 (275)
. +.+.|+.++...-+.| .|+...+-..+.-... ..+...|.+.|......|..+.. .+.++.-... ...+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCcCCCH
Confidence 2 6677888888888877 4554444333333333 35677899998887766655432 1222222222 34567
Q ss_pred HHHHHHHHHhhcCCChhHHH--HHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 152 KDAYVVVKDNSESISHPAIK--KFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
..|..++++..+.+.+.+.- ..+..+.. +.++.+.-.+..+.+.|
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 78888888877766544222 22233333 66666666655555544
No 348
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.87 E-value=3.7 Score=28.45 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcCCChh-HHHHHHH
Q 023915 152 KDAYVVVKDNSESISHP-AIKKFAS 175 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~-~~~~li~ 175 (275)
.+|+.+|++|.+.+.|| .++.|+.
T Consensus 112 ~DaY~VF~kML~~G~pPddW~~Ll~ 136 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPDDWDALLK 136 (140)
T ss_pred CcHHHHHHHHHhCCCCCccHHHHHH
Confidence 33444444444444433 4444443
No 349
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=69.51 E-value=32 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
.|.++++.+.+.+..++..|....|..+.+
T Consensus 43 Sa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 43 SAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred CHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 344444444444433333333333333333
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.86 E-value=36 Score=25.32 Aligned_cols=64 Identities=6% Similarity=-0.118 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh-ccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRY-SKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS 166 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (275)
+...+.......+.+......+..++ ....|++.+|..++..+...|+.++|..+..++..--.
T Consensus 111 ~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 111 YAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33334444455555555555554443 25677888899999999999999999999888776433
No 351
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=68.71 E-value=55 Score=25.70 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=97.2
Q ss_pred hhhcCcHHHHHHHHHHHHhcCC--CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHH---cc
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYNTFHILIKYFC---KE 78 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~---~~ 78 (275)
-.+.|++++|.+.|+.+...-+ +-...+--.++-++-+.+++++|+..+++... .+-.||. -|..-|.+.+ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 3578999999999999997422 22456677788889999999999999999876 3444444 2333344433 22
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHH
Q 023915 79 ----KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 79 ----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
.|...+...|..+.+ +|.-|=...=...|...+..+... . ...=..+-+-|.+.|.+..|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHH
Confidence 333444444444432 111111111112222211111100 0 00012344556667777777
Q ss_pred HHHHHHhhcCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 155 YVVVKDNSESIS-----HPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 155 ~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
..-++.+.+... .+.+-.+..+|...|-.++|...-.-+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 776666665321 22445566778888877777777666555
No 352
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.75 E-value=74 Score=26.82 Aligned_cols=55 Identities=22% Similarity=0.135 Sum_probs=39.5
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHh--ccCCHHHHHHHHHHHHhc
Q 023915 74 YFCKEKMYILAYRTMVDMHRKGHQPEEE--LCSSLIFHLG--KMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 129 (275)
.+.+.+++..|.++++++.+. ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455788999999999999887 555554 4455555554 467788888888876544
No 353
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.48 E-value=78 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHh---cCC-CCcHHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 12 EEAKQLAGDFEA---KYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 12 ~~a~~~~~~m~~---~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
++...++..... .|+ ..+......++..+ .|+...++.+++...
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 455555555432 133 44555555554432 677777777776654
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.10 E-value=65 Score=25.94 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=79.1
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhH-------HHHHHHHHccCCHHHHHHHHHHHhhc----CCCCChhhHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLL-------NSMLCAYCRTGDMESVMHVMRKLDEL----AISPDYNTFHIL 71 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l 71 (275)
+...+.+++++|..++.++...|+..+..+. .-+...|.+.|+...--++....++. .-+-......+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 4567889999999999999999887765544 45667788888876655554443321 111223345667
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 72 IKYFCKE-KMYILAYRTMVDMHRKGHQPE-----EELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 72 i~~~~~~-~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
|..+... ..++..+.+.+...+....-+ ...-..++..+.+.|.+.+|+.+.+.+.
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7666554 345555666555544322111 1222457888999999999988766543
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.98 E-value=50 Score=24.50 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCCCcHHh---HHHHHHHHHccCCHHHHHHHHHHHhhc-----CCCCCh-hhHHHHHHHHHccC--
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVL---LNSMLCAYCRTGDMESVMHVMRKLDEL-----AISPDY-NTFHILIKYFCKEK-- 79 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~-~t~~~li~~~~~~~-- 79 (275)
++.|.+-.+.--..++. |... |...+.-+++.....++.+++++..+. .+.|+. .++..+-.++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 45555555554443322 4443 444444444444444555555544432 267876 45555555555432
Q ss_pred --C-------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 80 --M-------YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 80 --~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
+ +++|...|+...+ ..|+..+|+.-+....+ |-++..++.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK------APELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT------HHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh------hHHHHHHHHHH
Confidence 2 3445555555444 47888899888877643 44555555443
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.93 E-value=97 Score=27.86 Aligned_cols=132 Identities=13% Similarity=0.017 Sum_probs=91.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (275)
..-+.+.+-+.+.|..++|+++-. .||.. | ....+.|+++.|.++..+. -+..-|..|-++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~-------D~d~r-F----elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELST-------DPDQR-F----ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCC-------Chhhh-h----hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 456777788888888888876521 13221 2 3345789999988877664 3456799999999
Q ss_pred hccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHH
Q 023915 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVM 190 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 190 (275)
.+.|++..|.+.|.... -|..|+-.+...|+-+....+-......+ ..|...-+|...|+++++.+++
T Consensus 677 l~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g---~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 677 LSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQG---KNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred hhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhc---ccchHHHHHHHcCCHHHHHHHH
Confidence 99999999999998754 45667777777777664444433333322 2345556788899999999986
Q ss_pred HH
Q 023915 191 KA 192 (275)
Q Consensus 191 ~~ 192 (275)
..
T Consensus 745 i~ 746 (794)
T KOG0276|consen 745 IS 746 (794)
T ss_pred Hh
Confidence 44
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.88 E-value=11 Score=17.12 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=12.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
|..+-..+...++++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.74 E-value=23 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=11.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
.+|.++...|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555544443
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.63 E-value=40 Score=23.34 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 49 VMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 49 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
..+-++.+..-.+.|+.......+++|.+.+|+..|.++|+.++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455556667777777777777777777777777776654
No 360
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=65.74 E-value=48 Score=26.90 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc----------cCCHHHH
Q 023915 50 MHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK----------MRAHSEA 119 (275)
Q Consensus 50 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~a 119 (275)
.++|+.|.+.++.|.-..|.=+.-.+++.=.+..++.+|+.+..-. .-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4788888888999998888877777888888888999999887432 226666666664 4788877
Q ss_pred HHHHHH
Q 023915 120 LSVYNM 125 (275)
Q Consensus 120 ~~~~~~ 125 (275)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777654
No 361
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=65.63 E-value=22 Score=21.28 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=15.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
|+...++.++..+++..-++.++..+.+....|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444444
No 362
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.18 E-value=74 Score=25.89 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=8.4
Q ss_pred CcHHhHHHHHHHH
Q 023915 28 YDVVLLNSMLCAY 40 (275)
Q Consensus 28 p~~~~~~~li~~~ 40 (275)
|.+..|+.+|+-|
T Consensus 109 ~~~qvf~KliRRy 121 (412)
T KOG2297|consen 109 NSVQVFQKLIRRY 121 (412)
T ss_pred HHHHHHHHHHHHH
Confidence 4566677777754
No 363
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.13 E-value=28 Score=28.71 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=20.8
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHccCCHHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVM 50 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 50 (275)
|-+.|++++|++.+..-... .| |.++|..--.+|.+...+..|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHH
Confidence 44455555555555444332 22 4445544444555554444443
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.09 E-value=1e+02 Score=27.52 Aligned_cols=150 Identities=16% Similarity=0.026 Sum_probs=96.3
Q ss_pred hhhcCcHHHHHHHHHHHHh-------cCCCCcHHhHHHHHHHHHccC-----CHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEA-------KYDKYDVVLLNSMLCAYCRTG-----DMESVMHVMRKLDELAISPDYNTFHILI 72 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li 72 (275)
++...+++.|+..|+.... .| +....+-+-.+|.+.. +.+.|+.+|...-+.|. |+...+-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 6678899999999999876 45 3445666777776643 66779999988888776 6665555555
Q ss_pred HHHHc-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH--hccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 73 KYFCK-EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL--GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 73 ~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
..... ..+...|.++|...-+.|..+.. -+-.++... .-..+.+.|...+......+ .|....-...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 44444 46788999999999988865432 222222222 24567888999998888777 3322222223334444 5
Q ss_pred chHHHHHHHHHh
Q 023915 150 LLKDAYVVVKDN 161 (275)
Q Consensus 150 ~~~~a~~~~~~~ 161 (275)
+.+.+...+..+
T Consensus 412 ~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 412 RYDTALALYLYL 423 (552)
T ss_pred cccHHHHHHHHH
Confidence 555554444443
No 365
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=64.30 E-value=39 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=7.4
Q ss_pred hhhcCcHHHHHHHHHHH
Q 023915 5 FCRGGCFEEAKQLAGDF 21 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m 21 (275)
|...|+.++|..-+.++
T Consensus 12 y~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 12 YFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHT-HHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHh
Confidence 34444555554444443
No 366
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.95 E-value=41 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=16.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
|..++..|...|.+++|++++..+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 367
>PRK09462 fur ferric uptake regulator; Provisional
Probab=63.76 E-value=49 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 116 HSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
.-.|.++++.+...+..++..|.-..|+.+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44444555555444444444443344444444433
No 368
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.35 E-value=95 Score=26.47 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=74.3
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH--ccCCHHHHHHHHHHHhhcCCCCChhhHHHHH-----------
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYC--RTGDMESVMHVMRKLDELAISPDYNTFHILI----------- 72 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li----------- 72 (275)
.-.|+.++|.++--...+.+ ....+...+++.+ -.++.+.|...|++-.. +.|+...-.++-
T Consensus 180 ~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 34455555555544444331 1122333333322 34566677777766655 335544322221
Q ss_pred --HHHHccCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 73 --KYFCKEKMYILAYRTMVDMHRK---GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 73 --~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
+-..+.|.+..|...|.+.+.. .+.|+...|...-....+.|+..+|+.--++...-.... ...+..--.++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHHHHHHH
Confidence 1234667777777777776632 244555566666666677777777766655443221110 0011111222333
Q ss_pred ccchHHHHHHHHHh
Q 023915 148 GKLLKDAYVVVKDN 161 (275)
Q Consensus 148 ~~~~~~a~~~~~~~ 161 (275)
.++|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666553
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.17 E-value=39 Score=21.60 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=14.4
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCCh
Q 023915 149 KLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNI 183 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 183 (275)
|+.+.|.+++..+. ..+..|..++.++...|.-
T Consensus 50 g~~~~ar~LL~~L~--rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV--QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc--cCCcHHHHHHHHHHHcCch
Confidence 44444444444444 2233444444444444443
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.61 E-value=82 Score=25.18 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHhhcCCCCChhh---HHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 45 DMESVMHVMRKLDELAISPDYNT---FHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
++++|+.-|.+..+..-.-.... ...+|....+.+++++....+.+|.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45555555555444211111111 2234444555555555555555543
No 371
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.50 E-value=1.3e+02 Score=27.39 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=37.5
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCC-------HHHHHHHHHHHhhc
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-------MESVMHVMRKLDEL 59 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~ 59 (275)
+|..|.|+|++++|.++..+... ........|-..+..|....+ -++...-|+.....
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 36678999999999999855554 344466778888888877533 23444555555443
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.49 E-value=83 Score=25.16 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=78.6
Q ss_pred cCcHHHHHHHHHHHH---hcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh---cCCC--CChhhHHHHHHHHHccC
Q 023915 8 GGCFEEAKQLAGDFE---AKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE---LAIS--PDYNTFHILIKYFCKEK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~--p~~~t~~~li~~~~~~~ 79 (275)
....++|+.-|+... ...-.-.....-.+|....+.++++++++-|.+|.. +.+. -+..+.|++++..+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 345666666665432 222233555666777777777777777777766642 2222 23345666666666665
Q ss_pred CHHHHHHHHHHHHH----cC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-----------cccccHHhHHHHHH
Q 023915 80 MYILAYRTMVDMHR----KG-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-----------KRSMCKALHEKILH 143 (275)
Q Consensus 80 ~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------~~~~~~~~~~~li~ 143 (275)
+.+.-..+++.-.+ .. -..=..|-+.|-..|...|.+.+..++++++.++ ....-...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55544443333221 11 0111112234555566666666666666655421 11112235666666
Q ss_pred HHHhccchHHHHHHHHH
Q 023915 144 ILISGKLLKDAYVVVKD 160 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~ 160 (275)
.|...++-..-..++++
T Consensus 200 mYT~qKnNKkLK~lYeq 216 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQ 216 (440)
T ss_pred hhhhhcccHHHHHHHHH
Confidence 66666655555555554
No 373
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.49 E-value=28 Score=31.12 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=31.2
Q ss_pred ccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCChhhHHH
Q 023915 133 MCKALHEKILHILISGKLLKDAYVVVKDNSESI-SHPAIKKFASAFVRLGNINLVNDVMKAIHAT----GYRIDQGIFHI 207 (275)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~y~~ 207 (275)
.+...-..++..|.+.|..+.|.++.+.+.... ....|..-+..+.++|+...+..+-+.+.+. |..++....+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~ 482 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDN 482 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 344456778888888888888888888765522 2336777788888888887777766665543 22222222211
Q ss_pred HHHH---------------HH--HhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 023915 208 AIAR---------------YI--AEREKKELLLKLLEWMTGQGYVVDSSTRNLILKN 247 (275)
Q Consensus 208 li~~---------------~~--~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~ 247 (275)
+... |. ...+++.+|.+.+-.+...++.|...-...|.++
T Consensus 483 i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 483 IGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------------------------------
T ss_pred hcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 1111 00 1235566666666666666666665554444443
No 374
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.42 E-value=60 Score=23.72 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=45.0
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 19 GDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 19 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
+.++..|++++..- -.++..+...++.-.|.++++.+.+.+..++..|---.|..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33566788755543 3566666666777899999999999987788877666666777666543
No 375
>PRK09687 putative lyase; Provisional
Probab=61.32 E-value=84 Score=25.19 Aligned_cols=30 Identities=3% Similarity=-0.160 Sum_probs=12.9
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHhcCC
Q 023915 153 DAYVVVKDNSESISHPAIKKFASAFVRLGN 182 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 182 (275)
.+...+..+....+...-...+.++.+.++
T Consensus 192 ~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 334444444433333344444444555444
No 376
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.86 E-value=88 Score=25.31 Aligned_cols=146 Identities=10% Similarity=0.050 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHH
Q 023915 81 YILAYRTMVDMHRKGH----QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (275)
.+.|.+.|.+....+. ..++..-..++....+.|+.+.-..+++...... +...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHH
Confidence 4567888888877422 3455666778888888888777666666655333 34567889999999999888888
Q ss_pred HHHHhhcC--CChhHHHHHHHHHHhcCCh--hHHHHHHHH----HHHcCCCCChhhHHHHHHHHH---HhchhHHHHHHH
Q 023915 157 VVKDNSES--ISHPAIKKFASAFVRLGNI--NLVNDVMKA----IHATGYRIDQGIFHIAIARYI---AEREKKELLLKL 225 (275)
Q Consensus 157 ~~~~~~~~--~~~~~~~~li~~~~~~~~~--~~a~~~~~~----m~~~g~~p~~~~y~~li~~~~---~~~~~~~~a~~l 225 (275)
+++..... ........++.++...+.. +.+.+.+.. +.+. +.++......++..+. ......+++.++
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 88887764 3344566666666644433 555555543 3332 2233224445554422 145666667777
Q ss_pred HHHHh
Q 023915 226 LEWMT 230 (275)
Q Consensus 226 ~~~m~ 230 (275)
|+.-.
T Consensus 302 ~~~~~ 306 (324)
T PF11838_consen 302 FEDKP 306 (324)
T ss_dssp HHHHC
T ss_pred HhhCc
Confidence 76553
No 377
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=60.44 E-value=12 Score=30.91 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHH---hchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh-HHHHHHHHhccCCC
Q 023915 202 QGIFHIAIARYIA---EREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG-RQLIADILSKQHMK 266 (275)
Q Consensus 202 ~~~y~~li~~~~~---~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~~~~~~~~~~~ 266 (275)
..++..|++.|.. +++++.+|.+++++|.+. ++...+-.+-.+...+| +...++++.++++-
T Consensus 23 ~~~v~~Lv~~~~~~gF~A~~L~~A~~i~~~Ml~~---~~~~ifL~~tgamvsaGlr~~i~~Li~~~~VD 88 (347)
T PRK02492 23 SFDAVPIIDAMGKMAFQSRDLARAADIYDMMLQD---KECAVILTLAGSLSSAGCMQVYIDLVRNNMVD 88 (347)
T ss_pred CCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHhC---CCCeEEEEeccchHHHHHHHHHHHHHHcCCee
Confidence 3467777776643 356677788888888642 34444555555666666 67777777777653
No 378
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=60.17 E-value=1e+02 Score=25.84 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=109.2
Q ss_pred hcCcHHHHHHHHHHHHhc--CCCCcHHhHHHHHHHHHccCCHHHHHHHHHH-Hhhc-CCCCC---hhhHHHHHHHHHccC
Q 023915 7 RGGCFEEAKQLAGDFEAK--YDKYDVVLLNSMLCAYCRTGDMESVMHVMRK-LDEL-AISPD---YNTFHILIKYFCKEK 79 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~-g~~p~---~~t~~~li~~~~~~~ 79 (275)
...+.++|+..|..-... ...--..+|..+..+.++.|.+++++..--. |.-. ...-+ ...|-.+-+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777655432 1111234667777778888887776543211 1100 01111 123444555555555
Q ss_pred CHHHHHHHHHHHHHc-CCCC---CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc-----cccccHHhHHHHHHHHHhccc
Q 023915 80 MYILAYRTMVDMHRK-GHQP---EEELCSSLIFHLGKMRAHSEALSVYNMLRYS-----KRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~ 150 (275)
++.+++++-..-... |..| -...--++-.++.-.+.++++++.|+....- .......++..+-+-|....+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555544443321 2222 1123334556666667777887777754431 122223456667777777777
Q ss_pred hHHHHHHHHHhhc-------CCChhHHH-----HHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-hhhHHHHHHHHH
Q 023915 151 LKDAYVVVKDNSE-------SISHPAIK-----KFASAFVRLGNINLVNDVMKAIHA----TGYRID-QGIFHIAIARYI 213 (275)
Q Consensus 151 ~~~a~~~~~~~~~-------~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~y~~li~~~~ 213 (275)
+++|.-+..+..+ .....-|. .|.-++...|.+.+|.+.-++-.+ .|-+|. ......+-+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy- 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY- 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH-
Confidence 7776665554332 11111232 233456666777766666655333 232221 12333344444
Q ss_pred HhchhHHHHHHHHHH
Q 023915 214 AEREKKELLLKLLEW 228 (275)
Q Consensus 214 ~~~~~~~~a~~l~~~ 228 (275)
+..|+.|.|+.-|++
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 355666655554443
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.99 E-value=1.4e+02 Score=27.16 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=96.1
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHH-----hHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCChhhHHHH-HHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVV-----LLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPDYNTFHIL-IKYFC 76 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l-i~~~~ 76 (275)
...+++.|...+.......-.++.. +-..++..+.+.+... |...+++..+. +..+-...|..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 5678899999998765433223322 2345566666666555 88888886653 333445556655 44444
Q ss_pred ccCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHh--ccCCHHHHHHHHHHHHhcc---------ccccHHhHHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKG---HQPEEELCSSLIFHLG--KMRAHSEALSVYNMLRYSK---------RSMCKALHEKIL 142 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~---------~~~~~~~~~~li 142 (275)
..++...|.+.++.....- ..|...++..++.+.. +.+..+.+.+..+.+.... ..|...+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 4589999999999887432 3555566666666654 4465677777777664322 234556777777
Q ss_pred HHHH--hccchHHHHHHHHHh
Q 023915 143 HILI--SGKLLKDAYVVVKDN 161 (275)
Q Consensus 143 ~~~~--~~~~~~~a~~~~~~~ 161 (275)
+.++ ..|+++.+...++++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 7665 466766766665543
No 380
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.67 E-value=92 Score=25.11 Aligned_cols=52 Identities=8% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
++...-+..+.....+.+..+.. ...-...++.....|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444455555555544432 22233455555666777777666666654
No 381
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=59.54 E-value=1.1e+02 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
.-..++.+.|+..++-.+++.+=+.. |......
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~ 300 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAE--PHPDIAL 300 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH
Confidence 33466777777777777777766643 4444443
No 382
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=59.31 E-value=1.2e+02 Score=26.30 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=90.2
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCC-Cc----HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH--HHc
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDK-YD----VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY--FCK 77 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--~~~ 77 (275)
+-+.+++.+|..+|..+-..--. |. ...-+.+|++|.. ++.+.....+.+..+. .| ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45778999999999988764211 11 2334678888865 4667766666666652 23 3334444443 457
Q ss_pred cCCHHHHHHHHHHHHHc--CCCC------------CHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc----ccccHHhHH
Q 023915 78 EKMYILAYRTMVDMHRK--GHQP------------EEELCSSLIFHLGKMRAHSEALSVYNMLRYSK----RSMCKALHE 139 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~ 139 (275)
.+++++|.+.+..-... +-.| |..-=+..++++...|+++++..+++.+...- ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888877665543 2222 22222456778889999999999999887543 336777888
Q ss_pred HHHHHHHhc
Q 023915 140 KILHILISG 148 (275)
Q Consensus 140 ~li~~~~~~ 148 (275)
.++-.++++
T Consensus 172 ~~vlmlsrS 180 (549)
T PF07079_consen 172 RAVLMLSRS 180 (549)
T ss_pred HHHHHHhHH
Confidence 866666553
No 383
>PRK09857 putative transposase; Provisional
Probab=58.63 E-value=94 Score=25.13 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC 134 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 134 (275)
+..++....+.++.+...++++.+.+. ++.......++..-+.+.|.-+++.++...|...|...+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666666777777677777777655 333344455666777777777778888888888877654
No 384
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.75 E-value=83 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=8.4
Q ss_pred HccCCHHHHHHHHHHHhh
Q 023915 41 CRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~ 58 (275)
.++|++++|..-|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhcccHHHHHHHHHHHHH
Confidence 344445555444444443
No 385
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=57.73 E-value=53 Score=25.08 Aligned_cols=82 Identities=9% Similarity=0.078 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhcCCC-------CChhhHHHHHHHHHccC---------CHHHHHHHHHHHHHcCCCC-CHHhHHHHHH
Q 023915 46 MESVMHVMRKLDELAIS-------PDYNTFHILIKYFCKEK---------MYILAYRTMVDMHRKGHQP-EEELCSSLIF 108 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~-------p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~~-~~~~~~~li~ 108 (275)
.+.|+.++.+|--..++ -...-|..+..+|.+.| +.+....+++-.++.|++. =+..|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 57788888888654332 23456888888888886 3445566666666666532 2346667776
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~ 127 (275)
--.-.-+++++.+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555556666666666543
No 386
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.52 E-value=23 Score=21.18 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=40.1
Q ss_pred CCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 023915 26 DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (275)
Q Consensus 26 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 78 (275)
+.|+...++.++..+++..-.++++..+++..++|. .+..+|---++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999886 4566666666666654
No 387
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.43 E-value=1e+02 Score=24.92 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=83.2
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHH---HHHHHHhcCChh
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKK---FASAFVRLGNIN 184 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~ 184 (275)
......|+...|...|+......... ...--.+..+|...|+.+.|..++..+........+.. =|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556788888888888776543333 23455677888888888888888888766544443333 345555555555
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHhh
Q 023915 185 LVNDVMKAIHATGYRI-DQGIFHIAIARYIAEREKKELLLKLLEWMTGQG-YVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~-~~p~~~t~~~li~~~~~~g 252 (275)
+...+-...-. .| |...--.+-..+. ..|+.++|.+.+-.+.++. -.-|...-..+++.+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555444444 35 4444444555554 5577777776655554332 2234455556666655444
No 388
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=57.39 E-value=48 Score=21.13 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023915 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDM 91 (275)
Q Consensus 51 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 91 (275)
++|+-....|+..|...|..++....-.--++...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 389
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.96 E-value=1.2e+02 Score=25.42 Aligned_cols=69 Identities=22% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHHHHHccCCHHH---HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhH
Q 023915 69 HILIKYFCKEKMYIL---AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALH 138 (275)
Q Consensus 69 ~~li~~~~~~~~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 138 (275)
..+++.+.+.++... |..+++...... +.|...--.++..|...|..+.|...|..+.-+.+..+.-.|
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 455555555555544 555556555442 334445556888999999999999999988877777665444
No 390
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.26 E-value=1.4e+02 Score=26.31 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=42.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
.|.....+++..++..-.+.-++.+-.+|...| -+...|-.++..|... ..+.-..+|+++.+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 455566677777777777777777777777654 3455677777777776 55555666665543
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.06 E-value=97 Score=24.29 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChh
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNIN 184 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 184 (275)
..|--|.+..+-+-..++.+-....+++.+.....+++ +...|++.+|+.-++.-.... .+-
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~----------------g~V 225 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGF----------------GLV 225 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccc----------------ccc
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHH
Q 023915 185 LVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLI 244 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~l 244 (275)
.++.+|+-.-+ |.+.....++.. | ..+++++|.+++.++-+.|+.|....-+..
T Consensus 226 n~enVfKv~d~----PhP~~v~~ml~~-~-~~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 226 NQENVFKVCDE----PHPLLVKKMLQA-C-LKRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred chhhhhhccCC----CChHHHHHHHHH-H-HhccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.44 E-value=60 Score=21.67 Aligned_cols=27 Identities=7% Similarity=0.173 Sum_probs=23.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888889999999999999988876
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.42 E-value=1.6e+02 Score=26.67 Aligned_cols=123 Identities=7% Similarity=-0.038 Sum_probs=73.8
Q ss_pred hhhhcCcHHHHHHHHHHHHhc----CCCCcHHhHHHH-HHHHHccCCHHHHHHHHHHHhhcC---CCCChhhHHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAK----YDKYDVVLLNSM-LCAYCRTGDMESVMHVMRKLDELA---ISPDYNTFHILIKYF 75 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~ 75 (275)
.+.+.+... |...++...+. +..+-...|.-+ +..+...+++..|++.++...... ..|-...+-.++.+.
T Consensus 109 i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 109 IYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred HHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 344444444 77777765542 233444555555 444434479999999998887542 345555555666654
Q ss_pred H--ccCCHHHHHHHHHHHHHcCC---------CCCHHhHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 023915 76 C--KEKMYILAYRTMVDMHRKGH---------QPEEELCSSLIFHLG--KMRAHSEALSVYNMLR 127 (275)
Q Consensus 76 ~--~~~~~~~a~~~~~~m~~~g~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 127 (275)
. +.+..+.+.+..+++..... .|-..+|..+++.++ ..|++..+...++++.
T Consensus 188 l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 44656777777777744322 335567777777665 4677667766666554
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.26 E-value=1.5e+02 Score=26.04 Aligned_cols=115 Identities=8% Similarity=0.001 Sum_probs=67.8
Q ss_pred ccCCHHHHH-HHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--CChhHHHHHHHHHHhcCChhHHHH
Q 023915 112 KMRAHSEAL-SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES--ISHPAIKKFASAFVRLGNINLVND 188 (275)
Q Consensus 112 ~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~ 188 (275)
..|+.-.|- +++..++.....|+.... .-......|+++.++..+...... ....+..++++.....|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 345555443 344444444444443222 223345678888888888776552 223366788888888888998888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 189 VMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 189 ~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
+-..|....+.- ....+.-. +-.+..|-+|++.-.|++..
T Consensus 379 ~a~~~l~~eie~-~ei~~iaa-~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIED-EEVLTVAA-GSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccCC-hhheeeec-ccHHHHhHHHHHHHHHHHHh
Confidence 888887765542 22222111 11245677788888777764
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.02 E-value=1e+02 Score=24.14 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=31.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhc----c-ccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYS----K-RSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
.+-.-|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+..+.+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555666677777777777666421 2 233344455566666666766665554433
No 396
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.81 E-value=35 Score=22.81 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 118 EALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 118 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
.|.++++.+.+.+..++..|.-..++.+...
T Consensus 18 sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~ 48 (116)
T cd07153 18 TAEEIYERLRKKGPSISLATVYRTLELLEEA 48 (116)
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence 3334444443333333333333333333333
No 397
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.94 E-value=1e+02 Score=23.83 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=61.4
Q ss_pred HHHHHHHHh--ccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhH-HHHHHHHHHh
Q 023915 103 CSSLIFHLG--KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPA-IKKFASAFVR 179 (275)
Q Consensus 103 ~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~li~~~~~ 179 (275)
|...+++|. ..++++.|.+.+-. +...+..-..++.++...|+.+.|..+++........+. ...++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 555666654 35667777777622 122222334688888888888888888888666554443 3333334 66
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 180 LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 180 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
++.+.+|...-+...+. -....+..++..+.
T Consensus 153 ~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred cCCHHHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 78888888776554441 11346666666654
No 398
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.93 E-value=26 Score=21.95 Aligned_cols=30 Identities=10% Similarity=0.406 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 204 IFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 204 ~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
-|+.-+.-|++.++-.++|+++++.|.++|
T Consensus 32 gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 32 GYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred CCCchHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 343333334445566666777777776665
No 399
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.19 E-value=82 Score=22.29 Aligned_cols=62 Identities=5% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 54 RKLDELAISPDYNTFHILIKYFCKE-KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 54 ~~m~~~g~~p~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
+.+++.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556676665543 2344444433 44566778888887777666666666666666665544
No 400
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=51.75 E-value=61 Score=20.66 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
++|+-....|+..|...|..+++...-.=.++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777778888888888888887777666677777777776543
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.69 E-value=3.3e+02 Score=29.17 Aligned_cols=143 Identities=12% Similarity=0.002 Sum_probs=85.2
Q ss_pred hhcCcHHHHHHHHHHH----HhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 6 CRGGCFEEAKQLAGDF----EAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
-+++.+.+|.-.|+.- ++. .....-|..+...|+.-+++|...-+...-.. .|+ ...-|-.....|++
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhhccH
Confidence 4667778888887772 221 12334456666688888888887777653111 132 23445556778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVV 157 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (275)
+.|...|+.+.+.+ ++...+++-++..-...|.++.+....+........-....++.-+.+-=+.++++.....
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999998654 3336678777777777777777766555443322222222223333333455555554444
No 402
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.57 E-value=2e+02 Score=26.63 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=19.1
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc
Q 023915 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC 134 (275)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 134 (275)
.....+++++.+ ++...++.+++++...|..+.
T Consensus 247 ~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 247 QYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 344455555554 666666666666666655443
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=2.3e+02 Score=27.09 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=67.4
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcC--CCC-cHHhHHHHHHHHHccCCH--HHHHHHHHHHhhc----CCC--C-----C
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKY--DKY-DVVLLNSMLCAYCRTGDM--ESVMHVMRKLDEL----AIS--P-----D 64 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g--~~p-~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~----g~~--p-----~ 64 (275)
||..|...|+.++|+++|.+..... ..+ -...+--++.-+-+.+.. +-+++.-+-.... |++ - .
T Consensus 510 Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~ 589 (877)
T KOG2063|consen 510 LIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQE 589 (877)
T ss_pred HHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhh
Confidence 4678999999999999999998632 111 112234455555555544 4444433332222 110 0 0
Q ss_pred hhhHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 65 YNTFH-ILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 65 ~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
..+.+ ..+-.|......+.+...++.+....-.++..-.+.++..|+.
T Consensus 590 ~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 590 AESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01111 2334566777888899999999876666777777888887765
No 404
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.18 E-value=1.8e+02 Score=26.03 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-ccCCHHHHHHHHHHHHHcC---CCCCHHhHHH-HHHHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFC-KEKMYILAYRTMVDMHRKG---HQPEEELCSS-LIFHL 110 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~-li~~~ 110 (275)
-|..+.+.|.+..|++.-.-+.+..-.-|....-.+|+.|+ ++.++.-.++++++..... ..||- .|+. |...|
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~ 426 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFF 426 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHH
Confidence 35567788999999998888877443334566667787765 6688888888888875432 34553 5554 44444
Q ss_pred hccCC---HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc-hHHHHHHHHHhhcCCChhHHHHHHHHHHhcC
Q 023915 111 GKMRA---HSEALSVYNMLRYSKRSMCKALHEKILHILISGKL-LKDAYVVVKDNSESISHPAIKKFASAFVRLG 181 (275)
Q Consensus 111 ~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~ 181 (275)
.+... .+.|...+.+..... +...+-|+..+.-..+ +..-.+++..-......|.+..++..|+...
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~----P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~ 497 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHH----PLVLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKLYANRN 497 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhC----cHHHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHHHHhhh
Confidence 44443 233444444332221 1123333333322211 1111222222233455567788888887665
No 405
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.96 E-value=1.2e+02 Score=23.75 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=43.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH----HcCC-CCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMH----RKGH-QPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
-+...|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+--++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 56677888899999999988875 2343 4555677788888888899888777655543
No 406
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=50.72 E-value=21 Score=29.26 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=29.6
Q ss_pred hHHHHHHHHHH---hchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh-HHHHHHHHhccCC
Q 023915 204 IFHIAIARYIA---EREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG-RQLIADILSKQHM 265 (275)
Q Consensus 204 ~y~~li~~~~~---~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~~~~~~~~~~ 265 (275)
++..|+..|.. +++++.+|.+++++|... ++...+-.+-.+...+| +...++++.++++
T Consensus 13 ~~~~lv~~~~~~gF~A~~l~~A~~i~~~Ml~d---~~~~ifL~~tg~mvsaGlr~~i~~Li~~g~V 75 (329)
T PRK00805 13 SISELLDAMADTGFQGRKLGESVRVWTEMLKD---PDNTIFMGLSGAMVPAGMRKIIKWLIRNRYV 75 (329)
T ss_pred CHHHHHHHHHHhCccHHHHHHHHHHHHHHHhC---CCCeEEEEeccchHHHHHHHHHHHHHHcCCe
Confidence 45555554432 244555666666666421 23333444444445555 5556666655554
No 407
>COG0819 TenA Putative transcription activator [Transcription]
Probab=50.21 E-value=1.2e+02 Score=23.41 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=15.6
Q ss_pred cCCCCcHHhHHHHHHHHHccCCHHH
Q 023915 24 KYDKYDVVLLNSMLCAYCRTGDMES 48 (275)
Q Consensus 24 ~g~~p~~~~~~~li~~~~~~g~~~~ 48 (275)
....|....|+.-|...+..|++.+
T Consensus 103 ~~~~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 103 TEPSPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred cCCCchHHHHHHHHHHHHhcCCHHH
Confidence 3445556667777777777776554
No 408
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=50.07 E-value=1.4e+02 Score=24.39 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
.|+++.+++..+.+.-.. .--...|.-++-.+.....+..|..++++
T Consensus 53 sG~WD~VL~~vqsLKLP~-kkL~dLYEqivlEliELREL~tAR~~lRQ 99 (508)
T KOG0275|consen 53 SGHWDTVLKTVQSLKLPD-KKLIDLYEQIVLELIELRELGTARSLLRQ 99 (508)
T ss_pred cCchHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 455665555554443211 11123455555555555566666666554
No 409
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=50.05 E-value=56 Score=19.94 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 217 EKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 217 ~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
++.+.+.+++++....|+.|.......+..+..+.|
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444554444444
No 410
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.65 E-value=32 Score=23.26 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhccccccHHhHHHHHHHHHh
Q 023915 116 HSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (275)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 147 (275)
.-.|.++++.+...+..++..|.-.-|+.+.+
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 33344444444433333333333333333333
No 411
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.26 E-value=1.8e+02 Score=25.46 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=58.8
Q ss_pred cCCHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 023915 43 TGDMESV-MHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (275)
Q Consensus 43 ~g~~~~a-~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (275)
.|+.-.| .++++-++...-.|+....-+.| +...|+++.+.+.+...... +-....+...++....+.|+++.|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3444333 34555555444445554444433 34556777766666655422 23334566667777777777777777
Q ss_pred HHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 122 VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 122 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+-..|....+...+. ....--..-..|-+++++..|++.
T Consensus 379 ~a~~~l~~eie~~ei-~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 379 TAEMMLSNEIEDEEV-LTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHhccccCChhh-eeeecccHHHHhHHHHHHHHHHHH
Confidence 766666544433221 111111122344556666666654
No 412
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.03 E-value=46 Score=22.23 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhcCCCCChhh
Q 023915 47 ESVMHVMRKLDELAISPDYNT 67 (275)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~t 67 (275)
-.|.++++.+.+.+..++..|
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~T 37 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLAT 37 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHH
Confidence 334444444444433333333
No 413
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=48.47 E-value=89 Score=21.61 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH---HHHHHHHHc-------c
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF---HILIKYFCK-------E 78 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~-------~ 78 (275)
++..-|.+++..+...+ -+...++.+....-.-.++++...+....-.|....- +..|+.|-. .
T Consensus 3 nNp~IA~~~l~~l~~s~------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~ 76 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQN 76 (126)
T ss_pred CcHHHHHHHHHHHcCCc------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhccccccc
Confidence 45666777766665432 2777778888887778888888888776655554321 122333322 1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 126 (275)
....-.-.+++.+.+.++.-....+..+=..|.+..+..+|-.+|+.+
T Consensus 77 R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 77 RLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred chhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 223334445555666665444445555555555666666666666654
No 414
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=48.41 E-value=2e+02 Score=25.55 Aligned_cols=175 Identities=12% Similarity=0.060 Sum_probs=112.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
|-...-+++..+..+.++.-+..+-.+|..-| -+...|-.++..|... ..+.-..+|+++.+.. -|...+..-+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 45556677778888878888888888888744 6777888999999988 5567788999888764 34444544444
Q ss_pred HHhccCCHHHHHHHHHHHHhcccc-----ccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh----HHHHHHHHHHh
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRS-----MCKALHEKILHILISGKLLKDAYVVVKDNSESISHP----AIKKFASAFVR 179 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~ 179 (275)
.+...++.+++...|......-++ .-...|..++.-. ..+.+..+.+..++....... .+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 444448888888888776543222 1122344433221 345566666666655433222 34445567888
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 180 LGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 180 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
..++++|.+++..+.+.. ..|...-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 889999999999877754 2355555555554
No 415
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.03 E-value=2.7e+02 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHHHHhccC--CHHHHHHHHHHHHhc
Q 023915 103 CSSLIFHLGKMR--AHSEALSVYNMLRYS 129 (275)
Q Consensus 103 ~~~li~~~~~~g--~~~~a~~~~~~m~~~ 129 (275)
+..+|.+|.+.+ +++.|+.....+++.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345666666665 566666666666544
No 416
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.57 E-value=1.2e+02 Score=22.65 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHccC----C-------HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 023915 10 CFEEAKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTG----D-------MESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g----~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 77 (275)
.+++|..=|++.... .|+. .++..+-.++...+ + +++|.+.|+...+ ..|+..+|+.-+....+
T Consensus 50 miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 50 MIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 345555566666554 4444 45555555555443 3 4445555555554 67999999999888743
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 023915 78 EKMYILAYRTMVDMHRKGHQ 97 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~ 97 (275)
|-.++.++.+.+..
T Consensus 126 ------ap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 126 ------APELHMEIHKQGLG 139 (186)
T ss_dssp ------HHHHHHHHHHSSS-
T ss_pred ------hHHHHHHHHHHHhh
Confidence 56677777666543
No 417
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=46.87 E-value=1.6e+02 Score=23.99 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=107.8
Q ss_pred cHHhHHHHHHHHHc------cC-----CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH-----
Q 023915 29 DVVLLNSMLCAYCR------TG-----DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH----- 92 (275)
Q Consensus 29 ~~~~~~~li~~~~~------~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~----- 92 (275)
...+|.+.|+++.. +| -..+|+++|.-+.++.-+ ..+-+-+|.++....+..+|...+....
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 44567777776662 12 146789999888875322 2344567777777777777665544321
Q ss_pred --H-------------------cCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhc----cc------------ccc
Q 023915 93 --R-------------------KGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYS----KR------------SMC 134 (275)
Q Consensus 93 --~-------------------~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~----~~------------~~~ 134 (275)
. .++..|+.-|...+...-+.. ..+++.++....... .- ..-
T Consensus 199 aLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly 278 (361)
T COG3947 199 ALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred HhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHH
Confidence 1 134456666766666554433 355555555544311 00 011
Q ss_pred HHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCChhhHH
Q 023915 135 KALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHA-----TGYRIDQGIFH 206 (275)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~y~ 206 (275)
..++...-..|..+|.+.+|.++.+.... ..+...+-.++..+...|+--.+..-++.+.+ .|+..|...++
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 12344556688899999999999998765 44455777899999999987666666666544 36666655544
No 418
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=46.56 E-value=1.9e+02 Score=24.94 Aligned_cols=163 Identities=13% Similarity=0.254 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhc--CCCCcHHhHHHHHHHHHccCCHHH-----HHHHHHHHhhcCCCCChhhHHHHH---HHHH-----c
Q 023915 13 EAKQLAGDFEAK--YDKYDVVLLNSMLCAYCRTGDMES-----VMHVMRKLDELAISPDYNTFHILI---KYFC-----K 77 (275)
Q Consensus 13 ~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~-----a~~~~~~m~~~g~~p~~~t~~~li---~~~~-----~ 77 (275)
++.++.+.|... .-.|-+.-..++|.-||+..+.+- -+.++.-+...++ |...+||..- .-|. .
T Consensus 73 DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN~F~ai~~kYIPkdcrp 151 (669)
T KOG3636|consen 73 DCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PRSDEFNVFFAITTKYIPKDCRP 151 (669)
T ss_pred HHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-CcchhhhhhHhhhhcccCCCCCC
Confidence 344444444321 113333345677777777765432 2344444444333 4455555332 2222 2
Q ss_pred cCCHHHHHHHHHH---------HHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH--
Q 023915 78 EKMYILAYRTMVD---------MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI-- 146 (275)
Q Consensus 78 ~~~~~~a~~~~~~---------m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-- 146 (275)
.|++=...+++-+ +....+.||.++.+.+-..++..-..+-...+|+--.+.+.+.-. .|.++| .++
T Consensus 152 kg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~v-ffLali-iLiNa 229 (669)
T KOG3636|consen 152 KGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLV-FFLALI-ILINA 229 (669)
T ss_pred CCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceeh-HHHHHH-Hhccc
Confidence 2333222222211 123457888888888888777777777777788766655444332 222222 121
Q ss_pred -------hccchHHHHHHHHHhhcCC---ChhHHHHHHHHHH
Q 023915 147 -------SGKLLKDAYVVVKDNSESI---SHPAIKKFASAFV 178 (275)
Q Consensus 147 -------~~~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~ 178 (275)
+...-++++++++.|.... +.|.+-+|...|+
T Consensus 230 ke~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 230 KEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 3344677888888876533 3345555555444
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.10 E-value=78 Score=20.27 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=10.4
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 023915 74 YFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~ 92 (275)
.....|++++|...+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444566666666655554
No 420
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.66 E-value=35 Score=23.08 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=11.3
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCChhh
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPDYNT 67 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 67 (275)
.+...+..-.|.++++.+.+.+...+..|
T Consensus 16 ~l~~~~~~~ta~ei~~~l~~~~~~is~~T 44 (120)
T PF01475_consen 16 LLKESPEHLTAEEIYDKLRKKGPRISLAT 44 (120)
T ss_dssp HHHHHSSSEEHHHHHHHHHHTTTT--HHH
T ss_pred HHHcCCCCCCHHHHHHHhhhccCCcCHHH
Confidence 33333334444444444444444444333
No 421
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.43 E-value=62 Score=29.00 Aligned_cols=57 Identities=9% Similarity=-0.050 Sum_probs=17.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 126 (275)
-.-++..|.+.|-.+.|..+.+.+-..-. ...-|..-+.-+.++|+...+..+-+.+
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444445555544444444444332211 1123444444445555554444444433
No 422
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=45.24 E-value=95 Score=20.99 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHh-cCCCC-cHHhHHHHHHHH
Q 023915 12 EEAKQLAGDFEA-KYDKY-DVVLLNSMLCAY 40 (275)
Q Consensus 12 ~~a~~~~~~m~~-~g~~p-~~~~~~~li~~~ 40 (275)
+++.+.+..++. .|+.| |+.+--++-..+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL 36 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSL 36 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 345555555554 45666 544443333333
No 423
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.84 E-value=59 Score=18.47 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=8.5
Q ss_pred HHccCCHHHHHHHHHHHhh
Q 023915 40 YCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~ 58 (275)
+.+.|++++|.+..+.+.+
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444444
No 424
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=44.09 E-value=22 Score=28.76 Aligned_cols=59 Identities=14% Similarity=-0.027 Sum_probs=26.4
Q ss_pred hHHHHHHHHHH---hchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh-HHHHHHHHhccCC
Q 023915 204 IFHIAIARYIA---EREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG-RQLIADILSKQHM 265 (275)
Q Consensus 204 ~y~~li~~~~~---~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~~~~~~~~~~ 265 (275)
++..|++.|.+ ++++..+|.+++++|.+. ++...+-.+-.+...+| +...+++++++++
T Consensus 12 ~v~~lv~~~~~~gF~a~~l~~A~~i~~~m~~~---~~~~ifLt~tg~mvsaGlr~ii~~Li~~g~V 74 (301)
T TIGR00321 12 TVCELIDSMGRTGFQGRRIGEADKIWKEMCFD---EEITIFMGYAGNLVPSGMREIIAYLIQHGMI 74 (301)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHHHHHHhC---CCCeEEEEeccccchhhHHHHHHHHHHcCCe
Confidence 44444444432 234455555555555431 22233333333444444 4555555555443
No 425
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=44.06 E-value=40 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYR 199 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 199 (275)
....++..+.. ++++++...+.++...|+.
T Consensus 7 ~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s 36 (89)
T PF08542_consen 7 VIEEILESCLN-GDFKEARKKLYELLVEGYS 36 (89)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHcCCC
Confidence 33444444433 3666666666665555543
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.05 E-value=1.1e+02 Score=21.21 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHH
Q 023915 184 NLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLE 227 (275)
Q Consensus 184 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~ 227 (275)
++..++|..|...|+--....|-.--..+....|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566788788877665544433333333445677777877775
No 427
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=44.03 E-value=89 Score=20.34 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhc-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 151 LKDAYVVVKDNSE-SISHPAIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 151 ~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
.+...+++..... .+...+++.|+.++...|.-..|..+-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3344444444333 3444466666666666666666666655555544
No 428
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.75 E-value=1.5e+02 Score=28.56 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCChhhH-HHHHHHHHccC--CHHHHHHHHHHHHHc
Q 023915 62 SPDYNTF-HILIKYFCKEK--MYILAYRTMVDMHRK 94 (275)
Q Consensus 62 ~p~~~t~-~~li~~~~~~~--~~~~a~~~~~~m~~~ 94 (275)
.++...| ..+|.+|.+.+ +++.|+++..++++.
T Consensus 808 ~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 808 PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444444 58888898888 899999999999876
No 429
>COG5210 GTPase-activating protein [General function prediction only]
Probab=43.75 E-value=2.3e+02 Score=24.98 Aligned_cols=45 Identities=11% Similarity=-0.054 Sum_probs=24.2
Q ss_pred HHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC
Q 023915 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESI 165 (275)
Q Consensus 121 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (275)
+++..+...++.+...++..++..+.+.-.++.+..+++.+--.+
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 345555555555555555555555555555555555555544433
No 430
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.83 E-value=2.2e+02 Score=24.41 Aligned_cols=48 Identities=15% Similarity=-0.017 Sum_probs=24.1
Q ss_pred hHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC
Q 023915 67 TFHILIKYFCKE---KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (275)
Q Consensus 67 t~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (275)
.+-.+|+++-|+ .|++.|+..+.+|.+.|-.|-...-..++-++-..|
T Consensus 248 ~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 248 AHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred hHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 334444444443 455555666666665555555444444444444433
No 431
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=42.67 E-value=21 Score=29.24 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcC----ChhHHHHHHHHHHH
Q 023915 169 AIKKFASAFVRLG----NINLVNDVMKAIHA 195 (275)
Q Consensus 169 ~~~~li~~~~~~~----~~~~a~~~~~~m~~ 195 (275)
++..|++.|...| ++.+|.+++++|.+
T Consensus 30 ~~~~l~~~~~~~gF~A~~l~~A~~i~~~M~~ 60 (334)
T PRK03971 30 DLEEVLDYYAKIGFQATHLGKAIKIWKKIEE 60 (334)
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHh
Confidence 4445555555433 44555555555543
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.40 E-value=39 Score=15.78 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=13.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHH
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSM 36 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~l 36 (275)
|+.+.|..+|+.+..... -+...|...
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHH
Confidence 455666666666665422 244444433
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.33 E-value=1.1e+02 Score=21.00 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNM 125 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (275)
.+..+|..|...|+-.. ..-|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777777776444 34566666667777777777777764
No 434
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.27 E-value=2.1e+02 Score=24.14 Aligned_cols=123 Identities=13% Similarity=0.029 Sum_probs=80.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC---C--CCHHhHHHHHHHHhccCCHHHHHHHHHHH----HhccccccHHhHHH
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMHRKGH---Q--PEEELCSSLIFHLGKMRAHSEALSVYNML----RYSKRSMCKALHEK 140 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g~---~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ 140 (275)
++-.++...+.++++++.|+.....-. . ....+|..|-..|.+..+.++|.-+.... ..-++.....-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 455667777888899988888654211 1 23357888899999999999887654432 22233333333433
Q ss_pred -----HHHHHHhccchHHHHHHHHHhhc----CCChhHHH----HHHHHHHhcCChhHHHHHHHH
Q 023915 141 -----ILHILISGKLLKDAYVVVKDNSE----SISHPAIK----KFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 141 -----li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~----~li~~~~~~~~~~~a~~~~~~ 192 (275)
+--++...|.+.+|.+.-++..+ .++.+++. .+.+.|...|+.+.|+.-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 33356677888888777776433 67777654 566788889998888777765
No 435
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.25 E-value=1.5e+02 Score=22.44 Aligned_cols=89 Identities=6% Similarity=-0.034 Sum_probs=41.2
Q ss_pred HHHhccCCHHHHHHHHHHHHhccc--cccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHH-HHHHHHHhcCChh
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKR--SMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIK-KFASAFVRLGNIN 184 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~ 184 (275)
..+..+|++++|...++....... ......--.+-+.....|..++|+..++........+.+. .--+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345556666666666654432211 1111111223334445556666666655544433332222 2234555566666
Q ss_pred HHHHHHHHHHHc
Q 023915 185 LVNDVMKAIHAT 196 (275)
Q Consensus 185 ~a~~~~~~m~~~ 196 (275)
+|..-|..-.+.
T Consensus 177 ~Ar~ay~kAl~~ 188 (207)
T COG2976 177 EARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHc
Confidence 666666555554
No 436
>COG0819 TenA Putative transcription activator [Transcription]
Probab=42.01 E-value=1.6e+02 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHcCCCCCHHhHHHHHHHHhccCCHHHH
Q 023915 91 MHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (275)
Q Consensus 91 m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (275)
+.+....|....|+..|...+..|++...
T Consensus 100 ~~~~~~~~~~~aYt~ym~~~~~~g~~~~~ 128 (218)
T COG0819 100 LLKTEPSPANKAYTRYLLDTAYSGSFAEL 128 (218)
T ss_pred HHhcCCCchHHHHHHHHHHHHhcCCHHHH
Confidence 34444556667788888877777776553
No 437
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=41.60 E-value=80 Score=26.09 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 183 INLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 183 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
++.|+++.+.+++.|+.||..||--..+.+..+-|+ |.-+.+.|...
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LItqIGN---A~gyVRmirsg 328 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLITQIGN---AMGYVRMIRSG 328 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence 567777888888888888877776666665544443 55555555543
No 438
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=41.30 E-value=2.1e+02 Score=23.74 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=27.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCChhhHHHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHIL 71 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l 71 (275)
--=.+++.|.++|.+++|+++....++-. --|+......+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 34478899999999999999987766422 23665544444
No 439
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.88 E-value=97 Score=19.84 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=33.5
Q ss_pred hhhcCcHHHHHHHHHHH----HhcCCCCc--HHhH--HHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 5 FCRGGCFEEAKQLAGDF----EAKYDKYD--VVLL--NSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m----~~~g~~p~--~~~~--~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
..+.|++..|.+-+... ...+..+. ...+ -.+.......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45778888885555444 44333321 1222 2234456678999999999998765
No 440
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.85 E-value=1.5e+02 Score=24.01 Aligned_cols=66 Identities=5% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH-hhcCCChh--HHHHHHHHHHhcCChhHHHHHHHH
Q 023915 124 NMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD-NSESISHP--AIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 124 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
+.+..+.+|.-..+|.++...=+. .-++.|...|.. |......| +...|...+..+ ...|..+|..
T Consensus 19 ~aIn~G~vP~iesa~~~~~e~e~~-~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~--~~~A~~~F~~ 87 (297)
T PF02841_consen 19 DAINSGSVPCIESAWQAVAEAENR-AAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQC--EKEALEVFMK 87 (297)
T ss_dssp HHHHTTS--BHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHhCCCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH--HHHHHHHHHH
Confidence 344444444444456555544332 346778888776 43332333 467788877665 6788888875
No 441
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.59 E-value=93 Score=19.57 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
+++..+.+|.-.++|+++++.|.+.| ..+...-+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 57788888888999999999988876 33444333
No 442
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.22 E-value=2.4e+02 Score=24.26 Aligned_cols=31 Identities=19% Similarity=-0.019 Sum_probs=17.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhcccc
Q 023915 102 LCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132 (275)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 132 (275)
+...-|..+.|.+++..|-.+-+++.+.+..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 4455566666666666666666666655433
No 443
>PF14162 YozD: YozD-like protein
Probab=40.05 E-value=69 Score=17.95 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhCCCCCCh
Q 023915 220 ELLLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 220 ~~a~~l~~~m~~~~~~p~~ 238 (275)
+-|.-.|.++.++|+.|+.
T Consensus 12 EIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHccCCCcH
Confidence 3466667777777777764
No 444
>PRK12928 lipoyl synthase; Provisional
Probab=39.87 E-value=64 Score=26.05 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=42.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
..+.....+...++..+++++.+.+.| |+..+-+.+|-++ .-..++..+.++.+.+.+
T Consensus 175 ~~vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 175 PRLQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 566676677788999999999998876 6666777788786 345566667777766544
No 445
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.86 E-value=1.1e+02 Score=20.19 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=31.3
Q ss_pred HHHHHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcC--ChhHHHHHHHHHHHcCC
Q 023915 139 EKILHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLG--NINLVNDVMKAIHATGY 198 (275)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~ 198 (275)
..++..|...++.++|...++++......+ ....++..+...+ .-+.+..++..+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 456667777788888888887754331111 2233343333332 23445556666665544
No 446
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=39.70 E-value=15 Score=21.09 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 023915 44 GDMESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (275)
Q Consensus 44 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 76 (275)
|-.++.+++|..|-++...|....|+..+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 334566667777776666666666665555443
No 447
>PRK12357 glutaminase; Reviewed
Probab=39.57 E-value=2.2e+02 Score=23.51 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=7.7
Q ss_pred CCCCChhhHHHHH
Q 023915 60 AISPDYNTFHILI 72 (275)
Q Consensus 60 g~~p~~~t~~~li 72 (275)
|..|+-..||+++
T Consensus 97 G~EPSG~~FNSi~ 109 (326)
T PRK12357 97 DVEPTGDAFNSII 109 (326)
T ss_pred CCCCCCCCcchhh
Confidence 5556666666654
No 448
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=38.80 E-value=1.7e+02 Score=24.14 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=16.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 023915 104 SSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
-.+++.|.+.|.+++|+++.....
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHH
Confidence 346777777777777777766554
No 449
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.50 E-value=3.4e+02 Score=25.45 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPD---YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
-+.+.+.+++|+++-+.- .|..|. .......|..+.-.|+++.|-...-.|.. -+...|..-+.-+...++
T Consensus 365 Wll~~k~yeeAl~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHhhHHHHHHHHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 344555666666554332 223332 23455666666666666666666666542 223344444444444444
Q ss_pred HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh------------------hc-CCChhHHHHHHHH
Q 023915 116 HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN------------------SE-SISHPAIKKFASA 176 (275)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~-~~~~~~~~~li~~ 176 (275)
.... +.-+........+..|..++-.+.. .+...-.++.++. .+ ..+...-..|...
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 4332 2222222233444455555555554 2222222222111 00 1111123357888
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 023915 177 FVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~ 195 (275)
|...+++.+|..++-..++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Confidence 9999999999999866544
No 450
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=38.19 E-value=58 Score=19.98 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 220 ELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 220 ~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
+.+.+++..-... .....|...|+.++.+.|+...++.+.
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~ 80 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIE 80 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHH
Confidence 3344444444333 334445566666666666666555554
No 451
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=37.80 E-value=88 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 023915 203 GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKN 247 (275)
Q Consensus 203 ~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~ 247 (275)
.|...++.+. ..|-..+...++++|.+.|+..+...|+.+++-
T Consensus 111 GtlGvL~~ak--~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 111 GTLGVLALAK--SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred ehhHHHHHHH--HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 4555555443 446666777777777777777777777766653
No 452
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=37.48 E-value=38 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh-HHHHHHHHhccCC
Q 023915 216 REKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG-RQLIADILSKQHM 265 (275)
Q Consensus 216 ~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~~~~~~~~~~ 265 (275)
++++.+|.+++++|... ++...+-.+-.+...+| +...+++++++++
T Consensus 39 A~~l~~A~~i~~~ml~~---~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~V 86 (316)
T PRK02301 39 AGRLAEAVDIYEEMLAD---DDVTKFFGLAGAMVPAGMRGIVSDLIRDGHI 86 (316)
T ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEcccchhHHHHHHHHHHHHHcCCe
Confidence 34444555555555421 22222333333444444 4455555554443
No 453
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=37.48 E-value=1.2e+02 Score=20.02 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=9.7
Q ss_pred hhhhcCcHHHHHHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFE 22 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~ 22 (275)
-|...+++++|.+-+.++.
T Consensus 11 ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 11 EYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHcCCHHHHHHHHHHhC
Confidence 3444555555555555543
No 454
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.46 E-value=3.7e+02 Score=25.60 Aligned_cols=202 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHH--------HHHccCCHHHHHHHHHHHhhc----CCCCChhhHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLC--------AYCRTGDMESVMHVMRKLDEL----AISPDYNTFHIL 71 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~--------~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l 71 (275)
...-.+++.+|..++.++...=..|+...-..+.. .....|+++.|.++-+...+. -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-----HhccC--CHHHHHHHHHHHHhccccccHH------hH
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH-----LGKMR--AHSEALSVYNMLRYSKRSMCKA------LH 138 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g--~~~~a~~~~~~m~~~~~~~~~~------~~ 138 (275)
..+..-.|++++|..+..+..+..-..+...|...... +-..| .....+..|.........-... ++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q ss_pred HHHHHHHHhccchHHHHHHHHHhhcCCChh------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 139 EKILHILISGKLLKDAYVVVKDNSESISHP------AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
.-+..++.+..--+......-+......+. .+..|.......|+.++|...++++......++...|
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
No 455
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=37.30 E-value=2e+02 Score=23.02 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=25.4
Q ss_pred HcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 93 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
..|+.+....|-..+-.|.+.....+-...|++|..
T Consensus 66 ~l~L~~~E~~yF~~lV~f~~ak~~~~k~~~~~~~~~ 101 (271)
T TIGR02147 66 ALGLDEKEAAYFEAMVNFGQAKTDTEKQQFFEEMQA 101 (271)
T ss_pred HcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 346677777777777777777777776777776664
No 456
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=37.26 E-value=86 Score=26.88 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCCh
Q 023915 183 INLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 183 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~ 238 (275)
|+.+.++.....+.|+..+..++..+...++ . .-+..|..+++.+...|..++.
T Consensus 149 wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~-p-ptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 149 WQYCDRLVGFYEENGVPINREPFGPLTGTLV-P-PSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred HHHHHHHHHHHHhcCceecccCCcCcccCcC-C-cHHHHHHHHHHHHHHccCCCCE
Confidence 3334444444455666666666666554443 3 3344466666666666555544
No 457
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=36.99 E-value=45 Score=28.52 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=37.2
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh----HHHHHHHHHccC
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT----FHILIKYFCKEK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~li~~~~~~~ 79 (275)
..++++|+++.++-...|...++ |-.-.|-+++.++.++|+.||..| ..-.+++|+-.|
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~SI-------------gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G 278 (561)
T COG2987 216 AETLDEALALAEEATAAGEPISI-------------GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceEE-------------EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCc
Confidence 45677777777777666544332 334456678888888888887764 344555566555
No 458
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.84 E-value=3e+02 Score=24.40 Aligned_cols=77 Identities=6% Similarity=0.081 Sum_probs=46.5
Q ss_pred HHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---CC----------CChhhHHHHHHHHHccCCHHHHHHH
Q 023915 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA---IS----------PDYNTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 21 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~~~~~~~~a~~~ 87 (275)
+...|+..+......++... .|+...|+.++++....| +. ++....-.++.+.. .++.+.++.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 34456666666666665543 578888888887765433 11 12222333444433 3777888888
Q ss_pred HHHHHHcCCCCCH
Q 023915 88 MVDMHRKGHQPEE 100 (275)
Q Consensus 88 ~~~m~~~g~~~~~ 100 (275)
+++|...|..|..
T Consensus 268 ~~~l~~~g~~~~~ 280 (509)
T PRK14958 268 VTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHcCCCHHH
Confidence 8888888877653
No 459
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=36.57 E-value=29 Score=29.55 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=43.2
Q ss_pred hcCcHHHHHHHHHHHH-------------hcCCCCcHHhHHHHHHHHHc-cCC---HHHHHHHHHHHh-----hcCCCCC
Q 023915 7 RGGCFEEAKQLAGDFE-------------AKYDKYDVVLLNSMLCAYCR-TGD---MESVMHVMRKLD-----ELAISPD 64 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~-------------~~g~~p~~~~~~~li~~~~~-~g~---~~~a~~~~~~m~-----~~g~~p~ 64 (275)
.-+|++...++|++.. ..|+.|...-|..-++.+++ .|- +|+++.-|+-.. --|+.||
T Consensus 183 ~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD 262 (432)
T COG0001 183 PYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD 262 (432)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc
Confidence 4578888888888762 23554555556555555555 443 456555555442 1379999
Q ss_pred hhhHHHHHHH
Q 023915 65 YNTFHILIKY 74 (275)
Q Consensus 65 ~~t~~~li~~ 74 (275)
..||..+|.+
T Consensus 263 lttlGKiIGG 272 (432)
T COG0001 263 LTTLGKIIGG 272 (432)
T ss_pred hhhhhhhhcC
Confidence 9999888765
No 460
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=36.40 E-value=1.4e+02 Score=20.31 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHH-HHhhCCCCCChhhHHHHH-HHHHHhh
Q 023915 183 INLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLE-WMTGQGYVVDSSTRNLIL-KNSHLFG 252 (275)
Q Consensus 183 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~-~m~~~~~~p~~~t~~~li-~~~~~~g 252 (275)
.++...+..+=++.|-.|...+|.++...++ . ..+++|+ +|.+.+-.-|..-||-++ +.+.+..
T Consensus 6 ~e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLL-E-----LGLRVYeaQ~erkes~Fnq~eFnK~lLE~v~kt~ 71 (118)
T PRK13713 6 YEKINAIVEERRQEGAREKDVSFSSVASMLL-E-----LGLRVYEAQMERKESGFNQTEFNKLLLECVVKTQ 71 (118)
T ss_pred HHHHHHHHHHHHHcCCCccCccHHHHHHHHH-H-----HhHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHH
Confidence 4566667777777799999999998888775 3 3455555 344444456777777654 4444443
No 461
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=36.09 E-value=1.1e+02 Score=19.27 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=12.9
Q ss_pred ccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCC
Q 023915 148 GKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGN 182 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 182 (275)
.|+.+.|..+++.+. ..+.-|..++.++..+|.
T Consensus 45 ~G~~~aa~~Ll~~L~--r~~~Wf~~Fl~AL~~~~~ 77 (84)
T cd08789 45 SGNIKAAWTLLDTLV--RRDNWLEPFLDALRECGL 77 (84)
T ss_pred CChHHHHHHHHHHHh--ccCChHHHHHHHHHHcCC
Confidence 344444444444433 122233444444444443
No 462
>PRK09857 putative transposase; Provisional
Probab=35.88 E-value=2.4e+02 Score=22.87 Aligned_cols=66 Identities=14% Similarity=-0.112 Sum_probs=41.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhH
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPA 169 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (275)
+..++.-..+.++.++..++++.+.+.. +......-.+..-+...|.-+++.++.++|...+....
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4556655566777777777777666542 22333344556666666776778888888877665543
No 463
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=35.50 E-value=1.2e+02 Score=19.34 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCC
Q 023915 149 KLLKDAYVVVKDNSESISHPAIKKFASAFVRLGN 182 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 182 (275)
|+.+.|..++..+.....+.-|..++.++-..|.
T Consensus 48 g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~ 81 (88)
T cd08812 48 GNIAAAEELLDRLERCDKPGWFQAFLDALRRTGN 81 (88)
T ss_pred ChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCC
Confidence 4444455555544432223344455555554444
No 464
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.39 E-value=2.1e+02 Score=22.06 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhhcC----------CChhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 023915 151 LKDAYVVVKDNSES----------ISHPAIKKFASAFVRLG---------NINLVNDVMKAIHATGYRI-DQGIFHIAIA 210 (275)
Q Consensus 151 ~~~a~~~~~~~~~~----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~p-~~~~y~~li~ 210 (275)
.+.|..++++|.-. ....-|..+..+|++.| +.+...++++...+.|++. =...|.++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 55667777766431 12235677778888776 4567777888788887653 3457888886
Q ss_pred HHHHhchhHHHHHHHHHHHh
Q 023915 211 RYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 211 ~~~~~~~~~~~a~~l~~~m~ 230 (275)
.-. -.-+.+++.+++..++
T Consensus 217 k~t-G~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KET-GNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccc-CCCCHHHHHHHHHHhh
Confidence 632 3456777888887765
No 465
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.29 E-value=2e+02 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=12.5
Q ss_pred HhcCChhHHHHHHHHHHH
Q 023915 178 VRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~ 195 (275)
.+.|+++.|++.++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 345777777777777765
No 466
>PHA03095 ankyrin-like protein; Provisional
Probab=35.27 E-value=2.9e+02 Score=23.76 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=35.6
Q ss_pred HHHHHhcCCCCcHHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 18 AGDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 18 ~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
++.+.+.|..++... -.+.+..+++.+ .....++.+.+.+.|..++.... .+-+..++..|+. ..+.+.+.+
T Consensus 30 v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~-~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~---~~iv~lLl~ 105 (471)
T PHA03095 30 VRRLLAAGADVNFRGEYGKTPLHLYLHYS-SEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT---LDVIKLLIK 105 (471)
T ss_pred HHHHHHcCCCcccCCCCCCCHHHHHHHhc-CCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCc---HHHHHHHHH
Confidence 333445555544322 123444444444 11222444455566766554332 2344444555542 223444556
Q ss_pred cCCCCCH
Q 023915 94 KGHQPEE 100 (275)
Q Consensus 94 ~g~~~~~ 100 (275)
.|..++.
T Consensus 106 ~ga~in~ 112 (471)
T PHA03095 106 AGADVNA 112 (471)
T ss_pred cCCCCCC
Confidence 6665543
No 467
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.22 E-value=6.1e+02 Score=27.47 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=56.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhc--cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCC
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYS--KRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGN 182 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 182 (275)
++-.+-.+++.+.+|...++.-... .-......|-.+-..|+..++++....+... ..-.++...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~---r~a~~sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR---RFADPSLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH---hhcCccHHHHHHHHHhhcc
Confidence 3444556677777777777763111 1111222333444477777777776666553 1122334444555667778
Q ss_pred hhHHHHHHHHHHHcCCCCC-hhhHHHHHHH
Q 023915 183 INLVNDVMKAIHATGYRID-QGIFHIAIAR 211 (275)
Q Consensus 183 ~~~a~~~~~~m~~~g~~p~-~~~y~~li~~ 211 (275)
|..|...|+.+.+.+ |+ ..+++-++..
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~s 1492 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKS 1492 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHh
Confidence 888888887777653 44 4445544433
No 468
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.02 E-value=3e+02 Score=23.80 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCcHHhH--HHHHHHHH--ccCCHHHHHHHHHHHhhcCCCCChhhHH--HHHHHHHccCCHHHHHHHH
Q 023915 15 KQLAGDFEAKYDKYDVVLL--NSMLCAYC--RTGDMESVMHVMRKLDELAISPDYNTFH--ILIKYFCKEKMYILAYRTM 88 (275)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~--~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~ 88 (275)
.++.+.+.+.|..++...- .+.+...+ ..|+. ++++.+.+.|..++..... +.+..+++.|. .-..+.
T Consensus 86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv 159 (480)
T PHA03100 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKIL 159 (480)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHH
Q ss_pred HHHHHcCCCCCHHhH--HHHHHHHhccCCHHHHHHHHHHHHhccccccHHhH--------HHHHHHHHhccc--hHHHHH
Q 023915 89 VDMHRKGHQPEEELC--SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALH--------EKILHILISGKL--LKDAYV 156 (275)
Q Consensus 89 ~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--------~~li~~~~~~~~--~~~a~~ 156 (275)
+.+.+.|..++...- .+.+...++.| -.++.+.+.+.|..+..... ...+...+..|. .+-+..
T Consensus 160 ~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~ 235 (480)
T PHA03100 160 KLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNY 235 (480)
T ss_pred HHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHH
Q ss_pred HHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHhchhHHHHHHHHH
Q 023915 157 VVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG---IFHIAIARYIAEREKKELLLKLLE 227 (275)
Q Consensus 157 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~~~~~~~a~~l~~ 227 (275)
+++.-.. ..+....+.+..+..... .++++.+.+.|..|+.. -.+.+-.+ + ..+..+-+..+++
T Consensus 236 Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~gad~n~~d~~g~tpl~~A-~-~~~~~~iv~~Ll~ 304 (480)
T PHA03100 236 LLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGANPNLVNKYGDTPLHIA-I-LNNNKEIFKLLLN 304 (480)
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCccCCCCCcHHHHH-H-HhCCHHHHHHHHh
No 469
>PRK14136 recX recombination regulator RecX; Provisional
Probab=34.86 E-value=2.5e+02 Score=22.90 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=57.4
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
.|-...|+..+..|+...... .++.+.|.+.|+.++ .+..+++.+.+.|+.-|..--..+
T Consensus 159 ~~~~~lk~kAL~lLSrReRSe--~ELr~KL~kkG~~ee------------------~IE~VIerLke~gYLDDeRFAesy 218 (309)
T PRK14136 159 RPARSLKGRALGYLSRREYSR--AELARKLAPYADESD------------------SVEPLLDALEREGWLSDARFAESL 218 (309)
T ss_pred ccHHHHHHHHHHHhhcccccH--HHHHHHHHHcCCCHH------------------HHHHHHHHHHHcCCcCHHHHHHHH
Confidence 456667777777776654432 355666666665443 345666777777765554444444
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
+... .+. ..-..|-.++.++|+.... ....+..+ ....++.|..++++
T Consensus 219 Vr~R--~~k-kGp~rIrqELrQKGId~eL--IEqALeei-eEDE~E~A~~L~eK 266 (309)
T PRK14136 219 VHRR--ASR-VGSARIVSELKRHAVGDAL--VESVGAQL-RETEFERAQAVWRK 266 (309)
T ss_pred HHHH--hhc-hhHHHHHHHHHHcCCCHHH--HHHHHHhc-cHhHHHHHHHHHHH
Confidence 4432 222 2334566777777776533 22333322 22334445555544
No 470
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.80 E-value=4.4e+02 Score=25.68 Aligned_cols=75 Identities=8% Similarity=-0.033 Sum_probs=48.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 178 VRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
.....+.+++.+|..|...|+.+....|.........+.+.+.+|..+|+.=.++.-.|-...-..+-....+.+
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 356677888888888888887777665544444444466778888888877666666665544444444334444
No 471
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.43 E-value=67 Score=16.11 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhH
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVLL 33 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~ 33 (275)
++.|..+|+..... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 45555555555543 3444444
No 472
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.29 E-value=2.2e+02 Score=22.12 Aligned_cols=55 Identities=7% Similarity=0.099 Sum_probs=28.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHc-cCCHHHHHHHHHHHh
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCR-TGDMESVMHVMRKLD 57 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~ 57 (275)
..+-++|+++++.+.++.+...+...+..--|.+-.+|-. -|....+++++....
T Consensus 9 klaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 9 KLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455667777777777777766665555555555555432 133344455554444
No 473
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=34.02 E-value=2.8e+02 Score=24.47 Aligned_cols=146 Identities=13% Similarity=-0.007 Sum_probs=82.6
Q ss_pred HHHHHHHcCCCCCHH---hHHHHHHHHhccCCHHHHHHHHHHHHhccc---cccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 87 TMVDMHRKGHQPEEE---LCSSLIFHLGKMRAHSEALSVYNMLRYSKR---SMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
+++.+.+.++-|++. +-.+++.+..-....++-..+|........ ..+...+...++-|...|.+.+...+...
T Consensus 192 VlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~ 271 (543)
T KOG2214|consen 192 VLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACV 271 (543)
T ss_pred HHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHH
Confidence 555556667777764 345566666666677777666665443322 33333455677777778877776666665
Q ss_pred hhcCCChhHHHHHHHHHHhcCChh----------HHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 161 NSESISHPAIKKFASAFVRLGNIN----------LVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 161 ~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
|......- ++..+|-+.|++- +-=++++.+- .||+..|.++...|. -.|-++ ...++.+-.
T Consensus 272 ~~~~~~~l---TFqEAY~rTGrIlNItV~p~s~~e~P~lLNylT----aPnVLIWSAV~aScs-~pgif~-~~~Ll~Kd~ 342 (543)
T KOG2214|consen 272 MKKRLGNL---TFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLT----APNVLIWSAVCASCS-VPGIFE-STPLLAKDL 342 (543)
T ss_pred HHHHhcch---hHHHHHHhhCceEEEEECccccCCChhHhhccC----CCceehhHHHHHhcc-cccccC-ccHHHHhhc
Confidence 55422211 3345555555421 1222333222 478888888887753 556555 666666665
Q ss_pred hCCCCCChhhH
Q 023915 231 GQGYVVDSSTR 241 (275)
Q Consensus 231 ~~~~~p~~~t~ 241 (275)
...+.|-..++
T Consensus 343 t~ei~p~~~~~ 353 (543)
T KOG2214|consen 343 TNEIEPFIVTF 353 (543)
T ss_pred cCcEeeccCCc
Confidence 55555554443
No 474
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.84 E-value=2.8e+02 Score=23.08 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred hccchHHHHHHHHHhhcCCChh----HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 147 SGKLLKDAYVVVKDNSESISHP----AIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
+.|+..+|.+.++++.+..+-. .-..+|.++.....+.++..++....+-.
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5677888888887765533322 12356777777666666666665554433
No 475
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.69 E-value=3.8e+02 Score=24.57 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHhccccc
Q 023915 114 RAHSEALSVYNMLRYSKRSM 133 (275)
Q Consensus 114 g~~~~a~~~~~~m~~~~~~~ 133 (275)
|+...++.+++++...|..+
T Consensus 264 ~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555554444433
No 476
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.46 E-value=2.3e+02 Score=21.99 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=59.7
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHhHH--HHHHHHhccCCHHHHHHHHHHHHhccccccH
Q 023915 61 ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP---EEELCS--SLIFHLGKMRAHSEALSVYNMLRYSKRSMCK 135 (275)
Q Consensus 61 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 135 (275)
+.++..-+|.|+--|.-...+.+|-..|.. ..|+.| |..++. .-|......|+.+.|.+..+.+...-...+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 556666667666555555445545544443 456655 333333 4677778899999999998887654444443
Q ss_pred HhHHHH----HHHHHhccchHHHHHHHHHhh
Q 023915 136 ALHEKI----LHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 136 ~~~~~l----i~~~~~~~~~~~a~~~~~~~~ 162 (275)
..+-.+ +--+.+.|..++|+++.+.-.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 222111 223456777888888887643
No 477
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=33.45 E-value=3.2e+02 Score=23.65 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=30.6
Q ss_pred HHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHH
Q 023915 122 VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIK 171 (275)
Q Consensus 122 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (275)
++..+.+..+.|+...+..+...|++.=-++-|..+|+--...+..-.+.
T Consensus 461 L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr 510 (586)
T KOG2223|consen 461 LFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFR 510 (586)
T ss_pred HHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHH
Confidence 44455556677777777777777777766676666666544444443333
No 478
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=33.34 E-value=54 Score=22.58 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=14.6
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLL 33 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~ 33 (275)
.|+...|.++++.+...|..|....|
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 46666667777777666666655444
No 479
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=33.17 E-value=60 Score=28.21 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=38.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh----HHHHHHHHHccC-CHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT----FHILIKYFCKEK-MYI 82 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~li~~~~~~~-~~~ 82 (275)
..++++|++..++.++.+-..++ |-.-.|.++|.++.++|+.||..| ....+.+|.=.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 35677777777777766544332 334456677888888888887764 233344555555 334
Q ss_pred HH
Q 023915 83 LA 84 (275)
Q Consensus 83 ~a 84 (275)
++
T Consensus 274 e~ 275 (545)
T TIGR01228 274 DA 275 (545)
T ss_pred HH
Confidence 43
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.02 E-value=2.9e+02 Score=22.96 Aligned_cols=115 Identities=5% Similarity=-0.051 Sum_probs=72.1
Q ss_pred HHhHHHHHHHHHhccchHHHHHHHHHhhcCC-----ChhHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCChh---
Q 023915 135 KALHEKILHILISGKLLKDAYVVVKDNSESI-----SHPAIKKFAS---AFVRLGNINLVNDVMKAIHATGYRIDQG--- 203 (275)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~--- 203 (275)
...+-..-.-||+.|+-+.|++.+++..+.- ..+..-.+|+ .|....-+.+-.+..+.+.+.|..++..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 3455667778899999999999888743311 1112222222 2333344556666667777888777764
Q ss_pred -hHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 204 -IFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 204 -~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
+|..+- |-...++.+|-.+|-+....=-.-...+|..++.-..-.|
T Consensus 184 KvY~Gly---~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 184 KVYQGLY---CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHHHHHH---HHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
Confidence 565554 3345778888888887766544556677777777666555
No 481
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.61 E-value=4.2e+02 Score=24.74 Aligned_cols=72 Identities=11% Similarity=-0.056 Sum_probs=41.4
Q ss_pred HcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-------------ccccHHhHHHHHHHHHhccchHHHHHHHH
Q 023915 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-------------RSMCKALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 93 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
..|+..+......++... .|++..++.+++.+...+ ...+......+++++.. ++...++.+++
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~ 269 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQ 269 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 445555555555555444 366666666665443211 11133344556666555 78889999999
Q ss_pred HhhcCCCh
Q 023915 160 DNSESISH 167 (275)
Q Consensus 160 ~~~~~~~~ 167 (275)
++...+..
T Consensus 270 ~L~~~G~d 277 (709)
T PRK08691 270 EMAACAVG 277 (709)
T ss_pred HHHHhCCC
Confidence 88775443
No 482
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.57 E-value=3.6e+02 Score=23.97 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=17.0
Q ss_pred HcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 023915 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (275)
Q Consensus 93 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 126 (275)
+.|+..+......++.. ..|++..|...++.+
T Consensus 202 ~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldka 233 (507)
T PRK06645 202 QENLKTDIEALRIIAYK--SEGSARDAVSILDQA 233 (507)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 44555555555444443 236666666666654
No 483
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=32.50 E-value=1.6e+02 Score=21.73 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=28.5
Q ss_pred HHHHHHHh-ccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 121 SVYNMLRY-SKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 121 ~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
++++.+.. .++.+....+.-++..+++.-.++.+..+|+.+...
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~e 196 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAE 196 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Confidence 35555553 566666666666777777766777777777765443
No 484
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=32.45 E-value=2.4e+02 Score=21.89 Aligned_cols=135 Identities=7% Similarity=-0.045 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
-+-+++.|.+.|- |......++....+...+..|+. ..+++.....|...--..+..|.....-..|---.+
T Consensus 82 FElYl~AM~e~GA--dt~~I~~fl~~~~~g~~v~~Al~------~~~~p~~~~~Fv~~Tf~~i~~~~~H~iAAaFtfGRE 153 (232)
T PF11251_consen 82 FELYLDAMEEVGA--DTSPIDRFLSLLREGTSVFEALQ------QADVPEPAKRFVRFTFEIIAEGKPHEIAAAFTFGRE 153 (232)
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCHHHHHH------hcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 3445566766653 44455556655555445555543 234555555555555566677777776666666666
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHH-HhchhHHHHHHHHHHH
Q 023915 164 SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG----IFHIAIARYI-AEREKKELLLKLLEWM 229 (275)
Q Consensus 164 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~y~~li~~~~-~~~~~~~~a~~l~~~m 229 (275)
...|..|..++... +....-...|....++.+..|.. .-..++..+| ....++++|...-.+.
T Consensus 154 dlIP~MF~~il~~~---~~~~~~~~~f~yYL~RHIElDgdeHgPlA~~ml~~Lcg~D~~kw~ea~~aa~~A 221 (232)
T PF11251_consen 154 DLIPDMFRSILKDL---NIPPGQLPTFRYYLERHIELDGDEHGPLAMQMLEELCGDDPQKWQEAEQAAKEA 221 (232)
T ss_pred cchHHHHHHHHHHh---cCCccccHHHHHHHHhhhhcCCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777787777766 33333333444444544445443 2334555555 2234466665554443
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.43 E-value=3.1e+02 Score=23.20 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=40.0
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCChh--hHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPDYN--TFHILIKYFC--KEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~--~~~~~~~a~~~~~~m~~~ 94 (275)
.+.+.+++..|.++|+++.++ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999987 666554 4555555555 346778888888887654
No 486
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=32.37 E-value=2.5e+02 Score=24.28 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=60.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc------CCC---CChhhHHHHHHHH----
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AIS---PDYNTFHILIKYF---- 75 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~---p~~~t~~~li~~~---- 75 (275)
..+++-.++++.+.+.|.. | ....-|+.|.+.++++.|.+.+.+-.+. |++ ....++..|+.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~~-d--vl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEGAA-D--VLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcCCC-C--eeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCE
Confidence 4567777788888776521 2 3445678888889999988888776432 222 2233455555543
Q ss_pred -HccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHhccCCHHHHHHHH
Q 023915 76 -CKEKMYILAYRTMVDMHRKGHQPE---EELCSSLIFHLGKMRAHSEALSVY 123 (275)
Q Consensus 76 -~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 123 (275)
.|.|..| +..+++-+...|+... ..+|+. -|.+.-.+++++.-|
T Consensus 102 qvRhGt~d-~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~w 149 (428)
T cd00245 102 QVRHGTPD-ARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENW 149 (428)
T ss_pred eeccCCcc-HHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHH
Confidence 2334333 4566666666665432 233332 233434455555555
No 487
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=32.36 E-value=1.8e+02 Score=25.18 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh----HHHHHHHHHHhchhHHHHH
Q 023915 148 GKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI----FHIAIARYIAEREKKELLL 223 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----y~~li~~~~~~~~~~~~a~ 223 (275)
...+++|+++.++....+.+. +.|-...|-+++.++.++|+.||..| .+-.+.+|+=.+-.++++.
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~----------SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~ 285 (561)
T COG2987 216 AETLDEALALAEEATAAGEPI----------SIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEAD 285 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCce----------EEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHH
Confidence 566888888888766655542 23445667788999999999998764 4445556653333344444
Q ss_pred HH
Q 023915 224 KL 225 (275)
Q Consensus 224 ~l 225 (275)
++
T Consensus 286 ~l 287 (561)
T COG2987 286 EL 287 (561)
T ss_pred HH
Confidence 43
No 488
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=32.36 E-value=1.4e+02 Score=19.18 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHhccchHHHHHHHHHhhc-CCChhHHHHHHHHHHhcCChhHHHH
Q 023915 144 ILISGKLLKDAYVVVKDNSE-SISHPAIKKFASAFVRLGNINLVND 188 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 188 (275)
-|-+.|..+.+.++++.... .+...+...|+.++..++.-.-|+.
T Consensus 41 ~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~ 86 (90)
T cd08780 41 EYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAED 86 (90)
T ss_pred hcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHH
Confidence 33344444444444444333 3333444455555554444443433
No 489
>PRK05414 urocanate hydratase; Provisional
Probab=32.13 E-value=63 Score=28.19 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=35.7
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh----HHHHHHHHHccC
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT----FHILIKYFCKEK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~li~~~~~~~ 79 (275)
..++++|++..++.++.+-..++ |-.-.|.++|.++.++|+.||..| ....+.+|.=.|
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G 278 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLSI-------------GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCC
Confidence 35677777777777766544332 334456677888888888887664 222333555555
No 490
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.05 E-value=3.7e+02 Score=23.91 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYRID 201 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 201 (275)
....++.++.. ++.+.+..+++.|...|..|.
T Consensus 248 ~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 248 LLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444444443 667777777777777776654
No 491
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=20 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh-HHHHHHHHhccCC
Q 023915 216 REKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG-RQLIADILSKQHM 265 (275)
Q Consensus 216 ~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~~~~~~~~~~ 265 (275)
+++.-+|.+++++|.+.. ..+|-.+-......| +...++++.++++
T Consensus 37 a~~l~eA~~I~~~m~~~~----~tvfl~~tg~~vssGlR~iia~LIr~~~i 83 (318)
T COG1899 37 ARRLAEAVEILREMLESR----VTVFLGLTGNLVSSGLREIIADLIRNGLI 83 (318)
T ss_pred chhHHHHHHHHHHHHhhc----CEEEEeccccccchhHHHHHHHHHHcCCe
Confidence 456666777777776654 344444444555555 6666666666654
No 492
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.02 E-value=3e+02 Score=22.91 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCHHhHH--HHHHHHhccCCHHHHHHHHHHHHhccc-cccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 98 PEEELCS--SLIFHLGKMRAHSEALSVYNMLRYSKR-SMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 98 ~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
.++.+|- .+.-+-.+.|+..+|.+.|+++.+... ..-......+|.++....-+.++-.++.+-.+
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444553 344444568999999999998775533 22233456788888887777766666655433
No 493
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=31.80 E-value=1.4e+02 Score=19.06 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=3.5
Q ss_pred hchhHHHHH
Q 023915 215 EREKKELLL 223 (275)
Q Consensus 215 ~~~~~~~a~ 223 (275)
+.++++.+.
T Consensus 77 ~~~RF~l~~ 85 (94)
T PF13877_consen 77 KVKRFDLAV 85 (94)
T ss_pred CCCCHHHHH
Confidence 334444333
No 494
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.27 E-value=1e+02 Score=21.75 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=33.4
Q ss_pred hcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 023915 58 ELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (275)
Q Consensus 58 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (275)
+.|++.. -|...++. +-+.|-+.+...++++|.+.|+..+...|+.++.-.
T Consensus 104 ~lgL~V~-GtlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 104 SLGLKVT-GTLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HcCCeee-ehhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3444332 24444443 345567777788899999999888888888776543
No 495
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.10 E-value=3.8e+02 Score=23.79 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYRID 201 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 201 (275)
....+++++ ..++.++|..+++.+...|..|.
T Consensus 244 ~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 244 RLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 334444444 44667777777777777664443
No 496
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.01 E-value=3.9e+02 Score=23.89 Aligned_cols=42 Identities=5% Similarity=0.108 Sum_probs=22.1
Q ss_pred HHHHHHHhccchHHHHHHHHHhhcCCChh----HHHHHHHHHHhcC
Q 023915 140 KILHILISGKLLKDAYVVVKDNSESISHP----AIKKFASAFVRLG 181 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~~~ 181 (275)
.++.-|.+.+++++|..++..|.-..... ..+.+.+.+.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~p 458 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQP 458 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCC
Confidence 45556666666666666666654432222 2334445555544
No 497
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.91 E-value=3.9e+02 Score=23.88 Aligned_cols=58 Identities=5% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
.-++.-|.+.+++++|..++..|.=... +. -.+.+.+.+...+..--++-+..++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCcccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4566677777777777777777753321 11 1223444555555543334444444444
No 498
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.84 E-value=4.2e+02 Score=24.26 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=56.0
Q ss_pred HHHHHHHH-HHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCC-------------CCChhhHHHHHHHHHcc
Q 023915 13 EAKQLAGD-FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-------------SPDYNTFHILIKYFCKE 78 (275)
Q Consensus 13 ~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------~p~~~t~~~li~~~~~~ 78 (275)
+..+.+.. +...|+..+......++.. ..|+...++.++++....|- .++......++.+...
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 33344433 3456887777777777764 45899999999887654331 1223333445555444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~ 100 (275)
|+...++.+++++.+.|..|..
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 7899999999999999877653
No 499
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.83 E-value=2.4e+02 Score=21.41 Aligned_cols=129 Identities=8% Similarity=0.049 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHH--HHHHHHHhccchHHHHHHHHHhhcCCChhHHHH-----
Q 023915 100 EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE--KILHILISGKLLKDAYVVVKDNSESISHPAIKK----- 172 (275)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 172 (275)
...|..++.+... +.. +.......+...+....-..+. .+-..++..+++++|...++..........+..
T Consensus 54 S~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 3456666666542 222 3334444444433222211222 345677889999999999998766554444443
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 173 FASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 173 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
|.+.....|.+|+|..+++.....+..+ .....-=+.+. ..|+-++|..-|+.-...+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill-~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILL-AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHH-HcCchHHHHHHHHHHHHcc
Confidence 4567788899999999988777644322 11222223444 4467777888888877765
No 500
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.74 E-value=1.3e+02 Score=18.48 Aligned_cols=36 Identities=22% Similarity=0.097 Sum_probs=25.3
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHcc
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRT 43 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 43 (275)
..=+.+.|..++..++.. -+.++..||++...+.+.
T Consensus 9 emlDtEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHHhcch-hhcChHHHHHHHHHHHHc
Confidence 334567788888887753 355888899888776654
Done!