Query 023915
Match_columns 275
No_of_seqs 326 out of 1443
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 14:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.8E-38 6.3E-43 269.1 23.6 207 12-251 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.6E-37 1.6E-41 260.6 23.1 181 1-213 32-221 (501)
3 2xpi_A Anaphase-promoting comp 99.9 9.2E-24 3.2E-28 183.7 28.2 252 4-261 314-573 (597)
4 2xpi_A Anaphase-promoting comp 99.9 6.7E-24 2.3E-28 184.5 26.5 255 2-263 279-541 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 6.7E-24 2.3E-28 186.6 8.9 164 29-192 126-306 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.9 1.7E-23 5.8E-28 184.1 7.8 114 1-114 133-250 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 2.3E-17 7.8E-22 136.1 27.1 251 3-260 75-361 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.8 5.2E-17 1.8E-21 133.9 28.8 251 3-262 41-329 (388)
9 2y4t_A DNAJ homolog subfamily 99.8 1.6E-16 5.5E-21 133.3 28.1 188 3-195 34-239 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 2.1E-16 7.1E-21 132.6 28.3 252 3-263 68-354 (450)
11 4eqf_A PEX5-related protein; a 99.8 1.9E-16 6.4E-21 129.4 23.6 255 3-263 73-352 (365)
12 1fch_A Peroxisomal targeting s 99.8 7.4E-16 2.5E-20 125.8 25.2 255 3-262 72-354 (368)
13 3hym_B Cell division cycle pro 99.8 5.4E-15 1.9E-19 118.6 28.8 257 3-265 30-297 (330)
14 3cv0_A Peroxisome targeting si 99.7 2.3E-15 8E-20 120.6 26.4 255 3-264 29-312 (327)
15 3mkr_A Coatomer subunit epsilo 99.7 3E-15 1E-19 118.7 23.4 239 3-254 7-250 (291)
16 3hym_B Cell division cycle pro 99.7 2.9E-14 1E-18 114.3 28.0 238 3-248 64-314 (330)
17 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.3E-19 115.1 23.6 224 2-239 41-269 (291)
18 2gw1_A Mitochondrial precursor 99.7 1.9E-14 6.5E-19 122.5 25.6 90 3-95 14-103 (514)
19 1b89_A Protein (clathrin heavy 99.7 2.1E-16 7.3E-21 129.5 10.5 182 7-222 15-196 (449)
20 3ieg_A DNAJ homolog subfamily 99.7 5E-13 1.7E-17 108.2 29.8 248 5-261 47-329 (359)
21 1b89_A Protein (clathrin heavy 99.7 1.2E-15 4.2E-20 125.0 14.1 225 1-259 38-262 (449)
22 1fch_A Peroxisomal targeting s 99.7 4.1E-14 1.4E-18 115.4 22.7 251 6-261 36-308 (368)
23 3ieg_A DNAJ homolog subfamily 99.7 5.8E-13 2E-17 107.8 28.6 248 3-261 11-295 (359)
24 3uq3_A Heat shock protein STI1 99.6 1.6E-13 5.4E-18 106.1 23.7 216 3-232 13-236 (258)
25 2gw1_A Mitochondrial precursor 99.6 5.4E-14 1.8E-18 119.7 22.1 249 7-261 201-472 (514)
26 4eqf_A PEX5-related protein; a 99.6 1.2E-13 4.1E-18 112.8 22.3 225 29-258 64-301 (365)
27 3cv0_A Peroxisome targeting si 99.6 1E-13 3.4E-18 111.0 21.5 221 3-229 63-312 (327)
28 2vq2_A PILW, putative fimbrial 99.6 1.6E-12 5.6E-17 98.2 25.3 212 29-245 7-222 (225)
29 3fp2_A TPR repeat-containing p 99.6 5.9E-13 2E-17 114.0 25.1 250 4-260 34-400 (537)
30 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-12 5.4E-17 100.4 24.8 209 30-244 37-248 (252)
31 2vq2_A PILW, putative fimbrial 99.6 1.5E-12 5.1E-17 98.4 24.2 202 3-209 16-222 (225)
32 2ho1_A Type 4 fimbrial biogene 99.6 6.5E-13 2.2E-17 102.6 22.6 200 3-207 45-247 (252)
33 1ouv_A Conserved hypothetical 99.6 4.5E-12 1.5E-16 99.2 26.9 214 4-233 15-252 (273)
34 3fp2_A TPR repeat-containing p 99.6 3.6E-12 1.2E-16 109.1 28.0 247 9-261 216-485 (537)
35 3u4t_A TPR repeat-containing p 99.6 1.9E-12 6.6E-17 101.0 23.5 230 3-238 11-254 (272)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-12 7E-17 100.9 23.5 224 5-233 15-245 (275)
37 3uq3_A Heat shock protein STI1 99.6 2.3E-12 8E-17 99.4 22.8 218 29-260 4-229 (258)
38 2pl2_A Hypothetical conserved 99.6 1.1E-12 3.6E-17 99.5 19.8 198 27-230 2-212 (217)
39 2q7f_A YRRB protein; TPR, prot 99.5 3.1E-12 1.1E-16 98.0 21.3 200 27-231 20-221 (243)
40 2pl2_A Hypothetical conserved 99.5 4.3E-12 1.5E-16 96.1 21.2 185 4-194 14-212 (217)
41 2q7f_A YRRB protein; TPR, prot 99.5 3.3E-12 1.1E-16 97.8 19.0 191 3-197 31-223 (243)
42 2h6f_A Protein farnesyltransfe 99.5 5E-11 1.7E-15 97.8 25.6 236 4-248 106-363 (382)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-11 4.2E-16 96.4 20.8 213 3-226 51-269 (275)
44 2ond_A Cleavage stimulation fa 99.5 1.5E-10 5.2E-15 92.3 26.7 215 12-232 33-270 (308)
45 1ouv_A Conserved hypothetical 99.5 2.3E-10 7.8E-15 89.5 26.7 206 29-250 5-230 (273)
46 3nf1_A KLC 1, kinesin light ch 99.5 1.9E-11 6.4E-16 97.0 20.7 167 29-195 26-223 (311)
47 4abn_A Tetratricopeptide repea 99.4 4E-11 1.4E-15 101.5 21.2 211 10-229 83-318 (474)
48 4a1s_A PINS, partner of inscut 99.4 1.2E-11 4E-16 102.4 16.7 254 4-259 57-364 (411)
49 3nf1_A KLC 1, kinesin light ch 99.4 3.5E-11 1.2E-15 95.4 18.5 227 3-231 35-306 (311)
50 3ro2_A PINS homolog, G-protein 99.4 5.2E-11 1.8E-15 95.2 18.8 258 4-262 14-327 (338)
51 3u4t_A TPR repeat-containing p 99.4 2.6E-10 8.8E-15 88.8 21.7 226 30-261 3-244 (272)
52 3sf4_A G-protein-signaling mod 99.4 6.9E-11 2.4E-15 97.3 18.9 255 4-259 18-328 (406)
53 3vtx_A MAMA; tetratricopeptide 99.3 4.7E-10 1.6E-14 82.2 20.4 163 29-195 4-169 (184)
54 4abn_A Tetratricopeptide repea 99.3 5.2E-11 1.8E-15 100.8 17.0 186 3-192 110-317 (474)
55 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-09 4E-14 80.1 21.2 169 64-238 4-174 (184)
56 2ond_A Cleavage stimulation fa 99.3 1E-09 3.4E-14 87.5 22.4 181 11-196 80-270 (308)
57 3ulq_A Response regulator aspa 99.3 8.5E-10 2.9E-14 90.6 22.2 224 4-231 112-367 (383)
58 2xm6_A Protein corresponding t 99.3 3.7E-08 1.3E-12 83.6 32.3 209 8-232 92-325 (490)
59 3as5_A MAMA; tetratricopeptide 99.3 9.5E-10 3.3E-14 80.1 19.6 163 30-195 8-172 (186)
60 3edt_B KLC 2, kinesin light ch 99.3 2E-10 6.9E-15 89.6 16.7 225 6-231 12-280 (283)
61 3edt_B KLC 2, kinesin light ch 99.3 5.2E-10 1.8E-14 87.2 18.5 222 41-263 12-277 (283)
62 2h6f_A Protein farnesyltransfe 99.3 2.3E-09 7.8E-14 87.9 22.8 214 30-252 97-323 (382)
63 3as5_A MAMA; tetratricopeptide 99.3 5.1E-10 1.7E-14 81.5 17.1 157 3-163 16-172 (186)
64 2xm6_A Protein corresponding t 99.3 4.7E-08 1.6E-12 83.0 31.4 225 8-251 56-304 (490)
65 4a1s_A PINS, partner of inscut 99.2 1.5E-10 5E-15 95.8 14.4 228 3-231 94-371 (411)
66 2ooe_A Cleavage stimulation fa 99.2 7E-09 2.4E-13 88.9 25.1 214 12-231 255-491 (530)
67 3sf4_A G-protein-signaling mod 99.2 6.1E-10 2.1E-14 91.6 16.6 249 3-252 55-361 (406)
68 3q15_A PSP28, response regulat 99.2 4.1E-09 1.4E-13 86.4 21.2 222 5-231 111-364 (378)
69 3ro2_A PINS homolog, G-protein 99.2 9.2E-10 3.1E-14 87.9 16.8 229 3-232 51-332 (338)
70 4gyw_A UDP-N-acetylglucosamine 99.2 2E-09 6.8E-14 95.2 20.2 163 29-195 8-173 (723)
71 1xi4_A Clathrin heavy chain; a 99.2 2.2E-08 7.5E-13 92.2 26.4 217 7-252 1088-1328(1630)
72 1hz4_A MALT regulatory protein 99.2 4.5E-08 1.5E-12 79.9 24.6 251 4-255 23-310 (373)
73 4i17_A Hypothetical protein; T 99.2 2.9E-08 1E-12 75.2 21.9 204 29-244 6-219 (228)
74 2fo7_A Synthetic consensus TPR 99.1 3.4E-09 1.2E-13 72.7 15.3 128 32-162 3-130 (136)
75 4gyw_A UDP-N-acetylglucosamine 99.1 3.8E-09 1.3E-13 93.4 18.3 155 3-162 17-172 (723)
76 1xi4_A Clathrin heavy chain; a 99.1 4E-08 1.4E-12 90.6 24.8 214 4-259 1058-1271(1630)
77 3ulq_A Response regulator aspa 99.1 7.3E-09 2.5E-13 85.0 18.5 220 36-259 109-360 (383)
78 4i17_A Hypothetical protein; T 99.1 5.2E-08 1.8E-12 73.8 21.5 148 63-213 5-164 (228)
79 2fo7_A Synthetic consensus TPR 99.1 1.6E-08 5.5E-13 69.3 16.2 121 4-127 10-130 (136)
80 1qqe_A Vesicular transport pro 99.1 1.4E-08 4.7E-13 80.3 17.7 205 10-231 32-268 (292)
81 1qqe_A Vesicular transport pro 99.1 2E-08 6.9E-13 79.3 18.5 197 13-231 3-227 (292)
82 1hz4_A MALT regulatory protein 99.1 6.4E-08 2.2E-12 79.0 21.7 227 4-231 62-321 (373)
83 2ooe_A Cleavage stimulation fa 99.0 7.5E-08 2.6E-12 82.6 22.2 185 8-196 292-492 (530)
84 3mv2_B Coatomer subunit epsilo 99.0 9.1E-08 3.1E-12 75.3 19.6 184 49-238 85-286 (310)
85 3mv2_B Coatomer subunit epsilo 99.0 3.7E-08 1.3E-12 77.5 17.0 180 14-202 85-286 (310)
86 3qky_A Outer membrane assembly 99.0 5.7E-08 1.9E-12 75.3 17.9 189 29-222 14-251 (261)
87 4g1t_A Interferon-induced prot 99.0 3.2E-07 1.1E-11 77.1 23.6 250 8-262 151-454 (472)
88 3rjv_A Putative SEL1 repeat pr 99.0 2.8E-07 9.6E-12 69.1 20.2 155 13-177 4-172 (212)
89 3rjv_A Putative SEL1 repeat pr 98.9 4.9E-07 1.7E-11 67.8 20.6 178 47-236 3-201 (212)
90 4g1t_A Interferon-induced prot 98.9 8.5E-07 2.9E-11 74.5 24.4 190 4-196 60-276 (472)
91 3q15_A PSP28, response regulat 98.9 7.5E-08 2.6E-12 78.9 17.4 193 3-195 149-364 (378)
92 2ifu_A Gamma-SNAP; membrane fu 98.9 3.5E-07 1.2E-11 72.7 19.6 187 7-194 3-222 (307)
93 3urz_A Uncharacterized protein 98.9 1.6E-07 5.5E-12 70.2 16.6 134 71-209 60-197 (208)
94 3qky_A Outer membrane assembly 98.9 8.4E-07 2.9E-11 68.6 20.8 169 64-238 14-228 (261)
95 2r5s_A Uncharacterized protein 98.9 3.4E-08 1.2E-12 71.8 12.1 52 5-57 16-67 (176)
96 3qou_A Protein YBBN; thioredox 98.9 1.3E-07 4.5E-12 74.5 15.5 162 28-194 115-282 (287)
97 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 68.8 17.0 172 4-197 13-214 (225)
98 2yhc_A BAMD, UPF0169 lipoprote 98.8 1E-06 3.5E-11 66.6 18.8 184 29-233 3-214 (225)
99 2vsy_A XCC0866; transferase, g 98.8 2.1E-07 7.3E-12 80.4 16.7 151 8-163 2-156 (568)
100 3u3w_A Transcriptional activat 98.8 2.7E-06 9.4E-11 67.0 21.0 160 70-230 80-264 (293)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.5E-07 2.6E-11 66.4 16.8 88 36-128 12-99 (213)
102 2pzi_A Probable serine/threoni 98.8 2.1E-07 7.3E-12 82.2 15.9 171 6-182 402-583 (681)
103 3u3w_A Transcriptional activat 98.8 5.2E-07 1.8E-11 71.2 16.6 167 29-195 74-265 (293)
104 4ga2_A E3 SUMO-protein ligase 98.7 1.3E-07 4.6E-12 66.8 11.2 114 5-122 7-121 (150)
105 3gw4_A Uncharacterized protein 98.7 4.6E-07 1.6E-11 66.9 14.2 154 6-160 3-172 (203)
106 3e4b_A ALGK; tetratricopeptide 98.7 9.3E-06 3.2E-10 68.2 23.7 194 29-235 175-390 (452)
107 3e4b_A ALGK; tetratricopeptide 98.7 1.4E-05 4.9E-10 67.0 24.4 213 4-231 185-420 (452)
108 2vsy_A XCC0866; transferase, g 98.7 7.2E-07 2.5E-11 77.1 16.9 151 43-197 2-158 (568)
109 3qou_A Protein YBBN; thioredox 98.7 1.2E-06 4E-11 69.0 16.5 160 64-228 116-280 (287)
110 2pzi_A Probable serine/threoni 98.7 5.1E-07 1.7E-11 79.8 15.8 183 41-229 402-602 (681)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.9E-06 9.8E-11 63.2 17.7 121 4-129 15-150 (213)
112 3urz_A Uncharacterized protein 98.7 2.9E-06 9.8E-11 63.3 17.5 134 104-245 58-197 (208)
113 2ifu_A Gamma-SNAP; membrane fu 98.7 8.3E-07 2.8E-11 70.5 15.2 184 3-188 44-253 (307)
114 3gw4_A Uncharacterized protein 98.6 2.2E-06 7.6E-11 63.2 15.8 154 41-195 3-175 (203)
115 2r5s_A Uncharacterized protein 98.6 7.8E-07 2.7E-11 64.5 12.4 58 33-92 9-67 (176)
116 2qfc_A PLCR protein; TPR, HTH, 98.6 7.2E-06 2.5E-10 64.5 18.9 167 29-195 74-265 (293)
117 2c2l_A CHIP, carboxy terminus 98.6 1.1E-06 3.8E-11 68.9 14.0 195 29-232 3-199 (281)
118 1na0_A Designed protein CTPR3; 98.6 3.7E-06 1.3E-10 56.4 14.5 98 30-129 9-106 (125)
119 2qfc_A PLCR protein; TPR, HTH, 98.6 7.4E-06 2.5E-10 64.5 18.2 165 64-229 74-263 (293)
120 1a17_A Serine/threonine protei 98.6 3.1E-06 1.1E-10 60.1 14.6 131 29-162 12-144 (166)
121 1na0_A Designed protein CTPR3; 98.6 2.7E-06 9.1E-11 57.1 13.2 106 3-111 17-122 (125)
122 4b4t_Q 26S proteasome regulato 98.6 0.00019 6.6E-09 59.3 27.5 192 4-195 13-244 (434)
123 4e6h_A MRNA 3'-END-processing 98.6 2.5E-05 8.7E-10 68.5 22.3 232 12-248 326-584 (679)
124 1a17_A Serine/threonine protei 98.6 6E-06 2E-10 58.6 15.5 126 67-194 15-144 (166)
125 4ga2_A E3 SUMO-protein ligase 98.6 9.7E-07 3.3E-11 62.3 11.1 113 40-156 7-120 (150)
126 2lni_A Stress-induced-phosphop 98.5 6.8E-06 2.3E-10 55.9 14.9 101 27-129 13-113 (133)
127 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.2E-11 63.3 11.3 123 5-130 20-145 (177)
128 4e6h_A MRNA 3'-END-processing 98.5 1.5E-05 5.3E-10 69.9 19.4 203 5-212 353-584 (679)
129 4f3v_A ESX-1 secretion system 98.5 6.9E-06 2.4E-10 63.8 14.8 185 7-196 18-237 (282)
130 4gco_A Protein STI-1; structur 98.5 6.3E-06 2.2E-10 56.2 13.0 103 26-130 8-111 (126)
131 2vyi_A SGTA protein; chaperone 98.5 1.1E-05 3.9E-10 54.4 14.0 118 29-149 11-128 (131)
132 2vyi_A SGTA protein; chaperone 98.4 7.6E-06 2.6E-10 55.3 13.0 111 3-116 20-130 (131)
133 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.8E-11 60.9 9.7 98 29-129 20-118 (148)
134 1p5q_A FKBP52, FK506-binding p 98.4 8.4E-06 2.9E-10 65.6 14.6 122 29-154 146-283 (336)
135 3gyz_A Chaperone protein IPGC; 98.4 1.4E-05 4.8E-10 56.3 13.8 97 30-129 36-133 (151)
136 2lni_A Stress-induced-phosphop 98.4 1.7E-05 5.9E-10 53.8 13.7 98 63-162 14-111 (133)
137 3dra_A Protein farnesyltransfe 98.4 0.00043 1.5E-08 54.7 24.1 217 9-231 47-286 (306)
138 4gcn_A Protein STI-1; structur 98.4 9E-06 3.1E-10 55.5 11.7 98 30-129 8-112 (127)
139 4gco_A Protein STI-1; structur 98.4 1.8E-05 6.2E-10 53.9 12.9 101 61-163 8-109 (126)
140 3gyz_A Chaperone protein IPGC; 98.4 7.2E-06 2.5E-10 57.9 11.1 92 4-100 45-137 (151)
141 1elw_A TPR1-domain of HOP; HOP 98.3 3E-05 1E-09 51.2 13.6 99 29-129 3-101 (118)
142 1p5q_A FKBP52, FK506-binding p 98.3 1.6E-05 5.6E-10 63.9 14.3 123 3-127 155-292 (336)
143 4b4t_Q 26S proteasome regulato 98.3 0.00013 4.5E-09 60.3 20.2 192 38-230 12-243 (434)
144 2kck_A TPR repeat; tetratricop 98.3 1.3E-05 4.4E-10 52.6 11.4 100 29-130 5-107 (112)
145 3sz7_A HSC70 cochaperone (SGT) 98.3 2.5E-05 8.6E-10 55.6 13.6 99 29-130 10-109 (164)
146 2e2e_A Formate-dependent nitri 98.3 2.2E-05 7.4E-10 56.6 12.9 118 77-196 22-144 (177)
147 3upv_A Heat shock protein STI1 98.3 6E-05 2.1E-09 50.9 14.2 98 30-129 4-101 (126)
148 2c2l_A CHIP, carboxy terminus 98.3 5.7E-06 1.9E-10 64.8 10.1 182 3-195 12-198 (281)
149 3ro3_A PINS homolog, G-protein 98.3 2.4E-05 8.3E-10 54.9 12.3 97 31-127 10-116 (164)
150 2fbn_A 70 kDa peptidylprolyl i 98.3 2.6E-06 8.9E-11 62.9 7.3 96 31-127 39-149 (198)
151 1elr_A TPR2A-domain of HOP; HO 98.2 2.4E-05 8E-10 52.8 11.6 99 30-129 4-108 (131)
152 2kck_A TPR repeat; tetratricop 98.2 2.6E-05 8.9E-10 51.1 11.4 90 3-95 14-107 (112)
153 3q49_B STIP1 homology and U bo 98.2 7.3E-05 2.5E-09 51.1 14.1 100 28-129 7-106 (137)
154 2xcb_A PCRH, regulatory protei 98.2 3.5E-05 1.2E-09 53.5 12.4 97 30-129 18-115 (142)
155 3ro3_A PINS homolog, G-protein 98.2 4.6E-05 1.6E-09 53.3 13.1 128 66-193 10-155 (164)
156 2dba_A Smooth muscle cell asso 98.2 5.5E-05 1.9E-09 52.3 13.3 98 29-129 27-128 (148)
157 3upv_A Heat shock protein STI1 98.2 5.2E-05 1.8E-09 51.2 12.6 88 4-94 13-101 (126)
158 1elr_A TPR2A-domain of HOP; HO 98.2 6E-05 2.1E-09 50.7 12.8 63 66-129 5-67 (131)
159 1elw_A TPR1-domain of HOP; HOP 98.2 0.00015 5E-09 47.8 14.3 97 65-163 4-100 (118)
160 3dra_A Protein farnesyltransfe 98.2 0.0014 4.7E-08 51.8 22.5 191 10-205 84-295 (306)
161 2xcb_A PCRH, regulatory protei 98.1 4.5E-05 1.5E-09 52.9 11.5 89 4-94 27-115 (142)
162 4f3v_A ESX-1 secretion system 98.1 2.6E-05 8.9E-10 60.6 10.9 123 4-129 111-237 (282)
163 4gcn_A Protein STI-1; structur 98.1 0.00013 4.5E-09 49.5 13.3 94 66-160 9-108 (127)
164 2vgx_A Chaperone SYCD; alterna 98.1 0.00011 3.8E-09 51.4 13.2 93 67-161 23-115 (148)
165 1wao_1 Serine/threonine protei 98.1 1.6E-05 5.4E-10 67.2 10.2 118 3-124 14-134 (477)
166 3sz7_A HSC70 cochaperone (SGT) 98.1 4.8E-05 1.6E-09 54.1 11.4 90 3-95 19-109 (164)
167 2fbn_A 70 kDa peptidylprolyl i 98.1 6.5E-05 2.2E-09 55.3 12.3 121 4-126 47-183 (198)
168 1hxi_A PEX5, peroxisome target 98.1 2.9E-05 1E-09 52.4 9.5 95 32-129 19-114 (121)
169 3q49_B STIP1 homology and U bo 98.1 0.00012 4.2E-09 50.0 12.7 63 64-127 8-70 (137)
170 1hxi_A PEX5, peroxisome target 98.1 6.7E-05 2.3E-09 50.6 10.7 95 67-163 19-113 (121)
171 2xev_A YBGF; tetratricopeptide 98.1 0.00017 5.9E-09 48.6 12.8 91 36-129 8-105 (129)
172 3k9i_A BH0479 protein; putativ 98.0 2.3E-05 7.7E-10 52.5 7.9 83 44-127 4-88 (117)
173 2xev_A YBGF; tetratricopeptide 98.0 0.00015 5.1E-09 48.9 12.1 87 5-94 12-105 (129)
174 1wao_1 Serine/threonine protei 98.0 0.00013 4.5E-09 61.6 13.9 122 34-159 10-134 (477)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00016 5.4E-09 60.7 13.7 122 30-155 268-405 (457)
176 2dba_A Smooth muscle cell asso 98.0 0.00062 2.1E-08 46.9 14.5 61 65-127 28-92 (148)
177 3n71_A Histone lysine methyltr 97.9 0.00021 7.2E-09 60.4 13.5 26 67-92 353-378 (490)
178 3k9i_A BH0479 protein; putativ 97.9 2.6E-05 8.8E-10 52.2 6.5 103 7-111 2-108 (117)
179 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00011 3.8E-09 59.1 9.9 146 30-195 179-327 (338)
180 3rkv_A Putative peptidylprolyl 97.8 0.00036 1.2E-08 49.4 11.6 101 29-130 10-127 (162)
181 1ihg_A Cyclophilin 40; ppiase 97.8 0.00042 1.4E-08 56.5 13.3 122 31-154 224-360 (370)
182 3n71_A Histone lysine methyltr 97.8 0.0005 1.7E-08 58.1 13.8 122 109-231 318-463 (490)
183 3q7a_A Farnesyltransferase alp 97.8 0.0081 2.8E-07 48.2 22.1 219 8-232 67-331 (349)
184 1klx_A Cysteine rich protein B 97.8 0.00099 3.4E-08 45.9 13.1 118 3-131 3-128 (138)
185 3rkv_A Putative peptidylprolyl 97.8 0.00039 1.3E-08 49.2 11.2 94 4-101 20-131 (162)
186 2hr2_A Hypothetical protein; a 97.7 0.00071 2.4E-08 47.6 11.4 96 31-128 12-130 (159)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0015 5.3E-08 54.7 15.3 127 102-231 270-414 (457)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.0022 7.7E-08 52.1 15.4 95 102-196 225-336 (370)
189 1klx_A Cysteine rich protein B 97.7 0.0012 4E-08 45.5 11.7 111 79-197 9-127 (138)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00017 5.9E-09 58.0 8.5 139 4-163 188-327 (338)
191 2uy1_A Cleavage stimulation fa 97.7 0.0085 2.9E-07 50.7 19.0 202 11-231 195-412 (493)
192 2hr2_A Hypothetical protein; a 97.6 0.0012 4.2E-08 46.4 10.6 101 4-104 20-146 (159)
193 2l6j_A TPR repeat-containing p 97.5 0.00023 7.8E-09 46.5 5.6 64 29-93 3-66 (111)
194 3dss_A Geranylgeranyl transfer 97.4 0.029 9.9E-07 44.7 21.4 217 8-231 42-303 (331)
195 3q7a_A Farnesyltransferase alp 97.4 0.035 1.2E-06 44.5 20.9 195 7-206 100-340 (349)
196 2kat_A Uncharacterized protein 97.4 0.0029 9.8E-08 41.6 10.4 77 14-92 4-80 (115)
197 2l6j_A TPR repeat-containing p 97.4 0.001 3.5E-08 43.3 8.1 98 63-161 2-104 (111)
198 1na3_A Designed protein CTPR2; 97.4 0.0037 1.3E-07 38.8 10.4 80 29-110 8-87 (91)
199 1zu2_A Mitochondrial import re 97.4 0.001 3.4E-08 46.8 8.1 99 5-108 12-132 (158)
200 2kat_A Uncharacterized protein 97.3 0.0038 1.3E-07 41.0 10.3 80 48-129 3-82 (115)
201 2uy1_A Cleavage stimulation fa 97.2 0.029 1E-06 47.4 17.2 177 4-195 222-412 (493)
202 3mkq_A Coatomer beta'-subunit; 97.2 0.007 2.4E-07 54.3 13.4 101 39-160 661-761 (814)
203 3ma5_A Tetratricopeptide repea 97.1 0.0062 2.1E-07 39.0 9.5 61 30-92 7-68 (100)
204 1na3_A Designed protein CTPR2; 97.0 0.011 3.8E-07 36.5 9.9 64 65-129 9-72 (91)
205 3qwp_A SET and MYND domain-con 97.0 0.0055 1.9E-07 50.9 9.9 88 41-128 298-399 (429)
206 3ma5_A Tetratricopeptide repea 97.0 0.0052 1.8E-07 39.4 8.0 85 64-149 6-91 (100)
207 3qww_A SET and MYND domain-con 97.0 0.0036 1.2E-07 52.0 8.8 85 44-128 312-410 (433)
208 1dce_A Protein (RAB geranylger 96.9 0.09 3.1E-06 45.3 17.0 168 10-182 44-241 (567)
209 3qww_A SET and MYND domain-con 96.8 0.0099 3.4E-07 49.4 10.2 60 169-229 342-408 (433)
210 3mkq_A Coatomer beta'-subunit; 96.8 0.0075 2.6E-07 54.1 10.2 45 76-126 663-707 (814)
211 3qwp_A SET and MYND domain-con 96.8 0.019 6.6E-07 47.6 11.9 88 142-230 294-398 (429)
212 3dss_A Geranylgeranyl transfer 96.7 0.17 5.7E-06 40.3 20.4 195 11-211 90-318 (331)
213 1pc2_A Mitochondria fission pr 96.6 0.035 1.2E-06 38.5 10.2 90 6-99 9-103 (152)
214 2kc7_A BFR218_protein; tetratr 96.6 0.017 5.7E-07 36.5 8.2 53 39-93 9-63 (99)
215 1dce_A Protein (RAB geranylger 96.6 0.32 1.1E-05 41.9 19.6 168 44-218 43-241 (567)
216 2kc7_A BFR218_protein; tetratr 96.5 0.015 5.2E-07 36.7 7.7 60 3-65 8-68 (99)
217 1zu2_A Mitochondrial import re 96.4 0.042 1.4E-06 38.5 9.5 38 112-150 14-51 (158)
218 3mkq_B Coatomer subunit alpha; 96.2 0.19 6.6E-06 35.8 15.5 47 6-58 16-62 (177)
219 3ly7_A Transcriptional activat 96.1 0.2 6.7E-06 40.4 13.2 142 26-171 190-347 (372)
220 1wy6_A Hypothetical protein ST 95.9 0.23 7.7E-06 33.7 13.0 63 170-234 94-156 (172)
221 3ly7_A Transcriptional activat 95.9 0.55 1.9E-05 37.8 15.6 143 61-207 190-348 (372)
222 2v5f_A Prolyl 4-hydroxylase su 95.5 0.17 5.7E-06 32.5 9.1 64 30-93 5-74 (104)
223 4b4t_P 26S proteasome regulato 95.5 0.9 3.1E-05 37.8 18.2 243 8-252 29-307 (445)
224 3u64_A Protein TP_0956; tetrat 95.5 0.32 1.1E-05 37.8 11.7 91 46-138 179-280 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.5 0.16 5.5E-06 32.6 8.9 66 64-129 4-75 (104)
226 3u64_A Protein TP_0956; tetrat 95.4 0.21 7.1E-06 38.8 10.4 94 9-104 177-281 (301)
227 3mkq_B Coatomer subunit alpha; 94.8 0.72 2.5E-05 32.9 15.6 44 42-91 17-60 (177)
228 4gns_B Protein CSD3, chitin bi 94.8 0.26 8.8E-06 43.8 10.6 122 4-127 257-398 (754)
229 3bee_A Putative YFRE protein; 94.7 0.38 1.3E-05 30.2 8.8 46 46-93 25-71 (93)
230 3bee_A Putative YFRE protein; 94.1 0.53 1.8E-05 29.5 8.4 49 11-60 25-73 (93)
231 1v54_E Cytochrome C oxidase po 93.9 0.68 2.3E-05 29.5 8.1 65 45-110 25-89 (109)
232 2ff4_A Probable regulatory pro 93.8 0.2 6.7E-06 40.9 7.4 72 32-104 173-249 (388)
233 1nzn_A CGI-135 protein, fissio 93.7 0.87 3E-05 30.4 9.0 80 13-94 19-103 (126)
234 1wdy_A 2-5A-dependent ribonucl 93.4 0.64 2.2E-05 35.4 9.6 244 2-268 9-281 (285)
235 1pc2_A Mitochondria fission pr 93.4 1.3 4.5E-05 30.7 11.6 31 98-128 30-63 (152)
236 4gns_B Protein CSD3, chitin bi 93.1 2.1 7.1E-05 38.1 13.0 124 69-194 252-398 (754)
237 1v54_E Cytochrome C oxidase po 92.8 1.1 3.9E-05 28.4 9.9 64 81-145 26-89 (109)
238 2ff4_A Probable regulatory pro 92.8 0.8 2.7E-05 37.3 9.6 71 67-138 173-248 (388)
239 1wy6_A Hypothetical protein ST 92.6 1.7 5.7E-05 29.6 13.4 143 8-172 20-162 (172)
240 2y69_E Cytochrome C oxidase su 91.8 1.6 5.4E-05 29.4 8.1 81 29-110 50-132 (152)
241 4fhn_B Nucleoporin NUP120; pro 91.5 5.5 0.00019 37.5 14.6 80 103-182 902-986 (1139)
242 4b4t_P 26S proteasome regulato 91.4 5.5 0.00019 33.1 18.7 228 2-229 63-321 (445)
243 4b4t_R RPN7, 26S proteasome re 91.3 3.9 0.00013 33.8 12.1 98 66-163 132-236 (429)
244 2y69_E Cytochrome C oxidase su 91.3 2.3 7.9E-05 28.7 9.9 65 80-145 68-132 (152)
245 4fhn_B Nucleoporin NUP120; pro 90.7 7.2 0.00025 36.7 14.5 82 68-151 902-987 (1139)
246 1nzn_A CGI-135 protein, fissio 90.1 3 0.0001 27.8 9.9 22 174-195 81-102 (126)
247 1k1a_A B-cell lymphoma 3-encod 89.4 1.4 4.7E-05 32.6 7.4 23 41-63 17-39 (241)
248 3ffl_A Anaphase-promoting comp 89.3 3 0.0001 29.3 8.2 34 141-174 128-161 (167)
249 4h7y_A Dual specificity protei 89.3 4 0.00014 28.2 9.9 62 149-211 74-137 (161)
250 2zu6_B Programmed cell death p 88.4 4.2 0.00014 31.8 9.5 23 140-162 171-193 (307)
251 4h7y_A Dual specificity protei 88.4 4.7 0.00016 27.9 10.6 105 29-135 12-129 (161)
252 3eiq_C Programmed cell death p 88.1 4.9 0.00017 32.3 9.8 24 139-162 221-244 (358)
253 3utm_A Tankyrase-1; tankyrase, 87.7 8.5 0.00029 30.0 11.5 107 4-123 30-144 (351)
254 4b4t_R RPN7, 26S proteasome re 85.7 11 0.00038 31.0 11.2 118 11-128 110-236 (429)
255 1zbp_A Hypothetical protein VP 85.7 4 0.00014 31.2 7.7 115 3-128 5-128 (273)
256 2uwj_G Type III export protein 83.8 6.3 0.00022 25.0 7.4 50 40-95 49-98 (115)
257 3kea_A K1L; tropism, ANK repea 83.8 3.9 0.00013 31.4 7.3 211 6-240 7-225 (285)
258 3eu9_A Huntingtin-interacting 83.5 6.4 0.00022 28.7 8.2 15 4-18 15-29 (240)
259 1wdy_A 2-5A-dependent ribonucl 83.3 7.7 0.00026 29.1 8.8 210 35-261 7-240 (285)
260 2p58_C Putative type III secre 83.3 6.7 0.00023 24.9 8.1 49 40-94 50-98 (116)
261 3ffl_A Anaphase-promoting comp 82.9 10 0.00034 26.6 8.3 111 24-134 12-156 (167)
262 1zbp_A Hypothetical protein VP 82.4 11 0.00038 28.8 8.8 117 73-196 5-129 (273)
263 2zu6_B Programmed cell death p 81.1 18 0.00061 28.3 10.7 70 169-240 168-239 (307)
264 2d2s_A Exocyst complex compone 79.5 17 0.00059 27.1 9.2 89 36-127 24-118 (235)
265 1y8m_A FIS1; mitochondria, unk 79.3 9.8 0.00034 25.9 6.9 74 25-100 34-110 (144)
266 3txn_A 26S proteasome regulato 79.3 24 0.00083 28.7 23.3 232 2-239 26-290 (394)
267 3o48_A Mitochondria fission 1 78.5 5.5 0.00019 26.8 5.4 74 25-100 35-111 (134)
268 3kea_A K1L; tropism, ANK repea 78.1 17 0.00059 27.7 9.2 182 3-204 36-225 (285)
269 3ljn_A Hypothetical protein; a 78.1 6.4 0.00022 31.2 6.9 207 3-228 25-266 (364)
270 3bge_A Predicted ATPase; struc 77.9 17 0.00058 26.2 9.2 62 70-131 9-78 (201)
271 2r9g_A AAA ATPase, central reg 77.6 18 0.0006 26.2 9.2 62 69-131 15-84 (204)
272 3aji_A 26S proteasome non-ATPa 75.6 9.6 0.00033 27.7 6.9 16 5-20 13-28 (231)
273 3hra_A Ankyrin repeat family p 74.3 15 0.00052 25.9 7.6 14 41-54 13-26 (201)
274 3o48_A Mitochondria fission 1 74.3 17 0.00058 24.4 9.9 71 60-130 35-108 (134)
275 3eu9_A Huntingtin-interacting 73.3 4.9 0.00017 29.4 4.8 200 15-233 22-237 (240)
276 1bd8_A P19INK4D CDK4/6 inhibit 72.5 3.5 0.00012 28.0 3.5 16 5-20 9-24 (156)
277 3cqc_A Nuclear pore complex pr 72.1 18 0.00063 27.6 7.6 25 33-57 37-61 (270)
278 2nsz_A Programmed cell death p 72.1 19 0.00064 23.9 8.6 66 137-202 9-78 (129)
279 3jxi_A Vanilloid receptor-rela 71.9 7.3 0.00025 29.1 5.5 24 41-64 13-36 (260)
280 2fe3_A Peroxide operon regulat 71.3 20 0.00067 24.4 7.0 62 89-151 11-72 (145)
281 2rfa_A Transient receptor pote 70.7 24 0.00082 25.5 8.1 52 174-227 158-218 (232)
282 2qq8_A TBC1 domain family memb 70.5 37 0.0013 26.7 11.9 45 87-131 215-259 (334)
283 1ug3_A EIF4GI, eukaryotic prot 70.4 30 0.001 27.4 8.8 23 138-160 144-166 (339)
284 2wpv_A GET4, UPF0363 protein Y 70.3 37 0.0013 26.6 16.9 135 10-159 12-158 (312)
285 1ug3_A EIF4GI, eukaryotic prot 70.2 39 0.0013 26.8 11.3 61 2-63 18-79 (339)
286 4fke_A Aminopeptidase N; zinc 69.1 70 0.0024 29.3 15.2 147 104-251 690-844 (909)
287 3lvg_A Clathrin heavy chain 1; 68.6 0.0065 2.2E-07 50.5 -12.7 172 29-213 82-274 (624)
288 3ctd_A Putative ATPase, AAA fa 68.6 32 0.0011 25.1 8.1 65 67-131 34-106 (213)
289 2fu4_A Ferric uptake regulatio 68.4 16 0.00055 21.7 6.3 58 91-149 8-66 (83)
290 1k1a_A B-cell lymphoma 3-encod 67.5 33 0.0011 24.9 9.3 182 71-267 12-210 (241)
291 2fu4_A Ferric uptake regulatio 67.4 17 0.00058 21.6 6.1 60 55-115 7-67 (83)
292 1mzb_A Ferric uptake regulatio 67.2 18 0.00061 24.2 6.1 60 90-150 8-68 (136)
293 3qye_A TBC1 domain family memb 66.9 44 0.0015 26.2 12.0 109 80-192 164-287 (331)
294 1n11_A Ankyrin; clathrin, BAND 66.9 49 0.0017 26.8 10.1 110 3-124 19-134 (437)
295 2xig_A Ferric uptake regulatio 66.6 19 0.00064 24.6 6.2 61 89-150 16-76 (150)
296 3esl_A Checkpoint serine/threo 66.0 35 0.0012 24.7 9.8 32 169-200 117-148 (202)
297 2w57_A Ferric uptake regulatio 66.0 21 0.00073 24.3 6.4 62 89-151 6-68 (150)
298 4ets_A Ferric uptake regulatio 65.9 28 0.00094 24.2 7.0 61 90-151 23-85 (162)
299 3lpz_A GET4 (YOR164C homolog); 65.5 49 0.0017 26.2 18.9 135 9-158 10-159 (336)
300 3t8k_A Uncharacterized protein 65.1 17 0.00057 25.8 5.9 56 184-240 91-151 (186)
301 2d2s_A Exocyst complex compone 65.0 41 0.0014 25.1 16.3 22 71-92 24-45 (235)
302 3eiq_C Programmed cell death p 64.8 53 0.0018 26.3 14.8 77 169-247 219-297 (358)
303 3aji_A 26S proteasome non-ATPa 64.5 30 0.001 24.9 7.5 182 36-237 9-199 (231)
304 3lvg_A Clathrin heavy chain 1; 64.3 0.2 6.8E-06 42.0 -4.9 172 2-188 90-283 (624)
305 3bu8_A Telomeric repeat-bindin 64.3 40 0.0014 24.8 8.0 49 11-59 88-143 (235)
306 3twr_A Tankyrase-2; ankyrin re 63.6 8.9 0.0003 26.2 4.2 16 144-159 114-129 (165)
307 3b7b_A Euchromatic histone-lys 62.1 12 0.0004 27.4 4.8 17 215-231 219-235 (237)
308 3d9h_A CDNA FLJ77766, highly s 61.5 24 0.00082 26.8 6.6 13 5-17 22-34 (285)
309 2wvi_A Mitotic checkpoint seri 61.3 39 0.0013 23.6 8.6 54 184-237 77-130 (164)
310 2ion_A PDCD4, programmed cell 61.2 37 0.0013 23.3 8.7 66 137-202 11-80 (152)
311 3eyy_A Putative iron uptake re 61.1 19 0.00065 24.4 5.3 59 90-150 9-67 (145)
312 3ljn_A Hypothetical protein; a 60.9 26 0.0009 27.6 7.0 193 28-237 16-238 (364)
313 3txn_A 26S proteasome regulato 60.2 68 0.0023 26.1 20.8 222 31-256 20-274 (394)
314 3rjo_A Endoplasmic reticulum a 58.7 73 0.0025 26.0 22.1 152 93-250 185-352 (419)
315 3jxi_A Vanilloid receptor-rela 58.1 8.6 0.00029 28.7 3.5 55 2-56 9-72 (260)
316 1y8m_A FIS1; mitochondria, unk 58.1 41 0.0014 22.9 11.6 70 62-131 36-108 (144)
317 3eyy_A Putative iron uptake re 57.3 24 0.00082 23.9 5.3 59 55-115 9-67 (145)
318 2fe3_A Peroxide operon regulat 55.5 45 0.0015 22.5 6.5 34 81-114 37-70 (145)
319 2etb_A Transient receptor pote 55.4 48 0.0016 24.4 7.3 23 40-62 9-31 (256)
320 2xig_A Ferric uptake regulatio 55.3 46 0.0016 22.6 6.9 60 56-116 18-77 (150)
321 2f8y_A Notch homolog 1, transl 55.3 42 0.0014 23.9 6.9 180 36-238 28-219 (223)
322 3esl_A Checkpoint serine/threo 55.1 58 0.002 23.6 9.9 58 78-135 92-150 (202)
323 2ion_A PDCD4, programmed cell 55.0 48 0.0016 22.7 10.6 26 102-127 11-36 (152)
324 2wvi_A Mitotic checkpoint seri 53.1 55 0.0019 22.8 7.0 71 27-100 60-131 (164)
325 3hra_A Ankyrin repeat family p 53.0 22 0.00074 25.0 4.8 81 3-88 10-92 (201)
326 4aez_C MAD3, mitotic spindle c 52.5 68 0.0023 23.7 8.1 53 184-236 131-183 (223)
327 2xai_A ASB-9, ankyrin repeat a 52.3 42 0.0015 24.9 6.6 15 4-18 9-23 (261)
328 3l6a_A Eukaryotic translation 52.2 90 0.0031 25.0 9.0 70 137-206 14-87 (364)
329 2b7e_A PRE-mRNA processing pro 51.9 15 0.00052 20.6 2.9 29 47-75 3-31 (59)
330 3bqo_A Telomeric repeat-bindin 51.8 23 0.00078 25.6 4.4 22 141-162 123-144 (211)
331 2keb_A DNA polymerase subunit 51.4 43 0.0015 21.0 6.5 29 50-78 29-57 (101)
332 3bu8_A Telomeric repeat-bindin 51.4 70 0.0024 23.5 8.7 22 174-195 121-142 (235)
333 2etb_A Transient receptor pote 51.3 14 0.00048 27.4 3.7 55 2-56 6-69 (256)
334 2ijq_A Hypothetical protein; s 51.1 59 0.002 22.6 6.5 60 33-93 36-103 (161)
335 3f6q_A Integrin-linked protein 50.8 31 0.0011 23.7 5.3 14 5-18 12-25 (179)
336 2dzn_A Probable 26S proteasome 50.7 27 0.00091 25.1 5.1 21 204-226 174-194 (228)
337 4a1g_A Mitotic checkpoint seri 50.7 58 0.002 22.4 8.8 53 184-236 82-134 (152)
338 4ets_A Ferric uptake regulatio 50.1 48 0.0017 22.9 6.0 61 55-116 23-85 (162)
339 3qil_A Clathrin heavy chain 1; 50.1 26 0.00089 23.0 4.1 48 36-86 38-85 (125)
340 1mzb_A Ferric uptake regulatio 50.0 47 0.0016 22.1 5.8 60 56-116 9-69 (136)
341 2yru_A Steroid receptor RNA ac 49.9 29 0.00098 22.7 4.4 42 52-93 48-89 (118)
342 2pnn_A Transient receptor pote 48.7 40 0.0014 25.2 6.0 58 33-91 14-80 (273)
343 3ygs_P Procaspase 9; apoptosis 48.7 40 0.0014 21.0 4.9 65 16-86 25-89 (97)
344 2nsz_A Programmed cell death p 48.4 56 0.0019 21.6 11.6 25 103-127 10-34 (129)
345 1wgl_A TOLL-interacting protei 47.8 20 0.00069 20.1 3.0 23 42-64 35-57 (59)
346 1bd8_A P19INK4D CDK4/6 inhibit 47.3 21 0.00071 23.9 3.8 18 38-55 7-24 (156)
347 3v31_A Ankyrin repeat family A 47.0 58 0.002 21.9 6.2 18 3-20 8-25 (167)
348 3pvs_A Replication-associated 46.7 1.2E+02 0.0042 25.0 15.3 45 12-58 168-220 (447)
349 2uwj_G Type III export protein 46.5 54 0.0018 20.8 9.1 51 176-233 48-98 (115)
350 2dzn_A Probable 26S proteasome 46.2 22 0.00075 25.6 4.0 183 2-202 6-203 (228)
351 2w57_A Ferric uptake regulatio 45.5 55 0.0019 22.2 5.6 60 56-116 8-68 (150)
352 2p58_C Putative type III secre 44.8 58 0.002 20.7 9.9 52 175-233 48-99 (116)
353 2rfa_A Transient receptor pote 44.7 78 0.0027 22.6 6.9 183 2-194 7-221 (232)
354 3mwm_A ZUR, putative metal upt 44.6 27 0.00094 23.4 3.9 47 104-150 17-63 (139)
355 2qfz_A TBC1 domain family memb 44.6 92 0.0031 24.6 7.6 46 121-166 230-275 (345)
356 3ibx_A TENA, HP1287, putative 44.4 90 0.0031 22.8 8.0 50 101-150 160-209 (221)
357 2o03_A Probable zinc uptake re 44.1 27 0.00094 23.1 3.8 45 106-150 16-60 (131)
358 4ady_A RPN2, 26S proteasome re 43.5 2E+02 0.0069 26.6 19.8 236 7-250 423-673 (963)
359 4aez_C MAD3, mitotic spindle c 43.4 93 0.0032 23.0 6.7 70 27-99 114-184 (223)
360 3ltm_A Alpha-REP4; protein eng 43.4 85 0.0029 22.2 17.5 104 137-250 97-200 (211)
361 3lpz_A GET4 (YOR164C homolog); 43.3 1.2E+02 0.0042 24.0 19.9 138 40-195 65-215 (336)
362 3ltm_A Alpha-REP4; protein eng 42.6 87 0.003 22.1 17.5 155 27-195 30-184 (211)
363 4g8k_A 2-5A-dependent ribonucl 42.5 1.1E+02 0.0039 23.4 11.2 82 174-267 243-328 (337)
364 3l6a_A Eukaryotic translation 42.1 1.3E+02 0.0045 24.0 16.0 24 34-57 16-39 (364)
365 1n11_A Ankyrin; clathrin, BAND 41.7 1E+02 0.0034 24.9 7.7 114 35-160 16-135 (437)
366 2o03_A Probable zinc uptake re 41.6 42 0.0014 22.2 4.4 45 71-115 16-60 (131)
367 2ijq_A Hypothetical protein; s 41.5 87 0.003 21.8 8.2 53 76-128 43-103 (161)
368 4b8b_A General negative regula 41.0 1.8E+02 0.006 25.2 11.4 73 40-112 459-543 (603)
369 3mwm_A ZUR, putative metal upt 41.0 38 0.0013 22.7 4.2 46 70-115 18-63 (139)
370 2keb_A DNA polymerase subunit 40.2 68 0.0023 20.1 7.7 59 183-244 25-88 (101)
371 3t8k_A Uncharacterized protein 38.2 1E+02 0.0034 21.6 8.5 23 42-64 47-69 (186)
372 2wpv_A GET4, UPF0363 protein Y 38.1 1.4E+02 0.0049 23.3 19.8 139 40-194 63-215 (312)
373 3qye_A TBC1 domain family memb 36.6 98 0.0033 24.2 6.6 143 34-180 153-307 (331)
374 4a1g_A Mitotic checkpoint seri 35.8 1.1E+02 0.0036 21.1 9.4 51 84-134 84-135 (152)
375 3v30_A DNA-binding protein rfx 35.0 37 0.0013 23.1 3.5 17 3-19 7-23 (172)
376 2lwd_A Probable ATP-dependent 34.2 88 0.003 19.7 5.9 14 148-161 56-69 (100)
377 1dp3_A TRAM protein; helix-loo 34.2 43 0.0015 18.3 2.8 41 4-44 5-45 (55)
378 2yru_A Steroid receptor RNA ac 33.7 99 0.0034 20.1 5.6 42 17-58 48-89 (118)
379 3no6_A Transcriptional activat 33.2 1.5E+02 0.0052 22.1 8.6 10 102-111 178-187 (248)
380 3b7b_A Euchromatic histone-lys 33.1 44 0.0015 24.1 3.9 141 2-160 15-166 (237)
381 3f3f_C Nucleoporin NUP85; stru 33.0 1.3E+02 0.0044 25.8 6.8 85 32-119 481-568 (570)
382 1q2z_A ATP-dependent DNA helic 32.8 68 0.0023 20.9 4.2 27 151-177 43-73 (120)
383 4fke_A Aminopeptidase N; zinc 32.7 2.9E+02 0.01 25.3 19.3 89 34-127 690-785 (909)
384 2xai_A ASB-9, ankyrin repeat a 32.5 1.5E+02 0.005 21.8 9.1 180 36-237 6-193 (261)
385 3v30_A DNA-binding protein rfx 32.0 1.2E+02 0.004 20.4 5.9 18 38-55 7-24 (172)
386 1qsa_A Protein (soluble lytic 31.7 2.6E+02 0.0088 24.3 18.2 227 10-240 229-487 (618)
387 1ug2_A 2610100B20RIK gene prod 31.5 80 0.0027 19.5 3.9 44 187-232 42-90 (95)
388 2of5_H Leucine-rich repeat and 31.5 94 0.0032 20.1 4.8 46 220-267 54-100 (118)
389 3d9h_A CDNA FLJ77766, highly s 31.1 1.2E+02 0.0042 22.7 6.2 78 142-225 161-241 (285)
390 2xdt_A Endoplasmic reticulum a 29.3 3.3E+02 0.011 24.9 15.3 141 103-249 683-834 (897)
391 1rw2_A ATP-dependent DNA helic 29.1 1.4E+02 0.0048 20.5 6.0 28 150-177 73-104 (152)
392 3f3f_C Nucleoporin NUP85; stru 29.0 1.8E+02 0.0061 25.0 7.0 51 169-222 518-568 (570)
393 2r9g_A AAA ATPase, central reg 28.7 1.7E+02 0.0057 21.2 9.8 64 33-97 14-85 (204)
394 4fn6_A Thiaminase-2, thiaminas 28.2 1.8E+02 0.006 21.3 9.7 50 101-152 158-208 (229)
395 1oai_A Nuclear RNA export fact 27.7 65 0.0022 18.0 3.0 23 43-65 33-56 (59)
396 3ezq_B Protein FADD; apoptosis 27.6 1.2E+02 0.0042 19.8 4.8 43 153-195 48-91 (122)
397 3gvo_A Pumilio 2, pumilio homo 27.4 2.3E+02 0.0077 22.3 8.6 218 6-231 45-278 (351)
398 2pnn_A Transient receptor pote 27.3 57 0.002 24.3 3.7 55 2-56 17-80 (273)
399 1zl8_A LIN-7; heterodimer, alp 27.2 79 0.0027 17.0 4.7 18 10-27 8-25 (53)
400 4gpm_A Engineered protein OR26 27.1 1.5E+02 0.0052 20.2 6.3 13 147-159 112-124 (169)
401 1fkm_A Protein (GYP1P), ORF YO 27.1 1.7E+02 0.0058 23.7 6.5 44 87-130 218-261 (396)
402 3m0z_A Putative aldolase; MCSG 27.0 87 0.003 23.2 4.2 82 46-127 147-245 (249)
403 3k1s_A PTS system, cellobiose- 27.0 1.2E+02 0.0041 19.4 4.5 19 5-23 32-50 (109)
404 3m6y_A 4-hydroxy-2-oxoglutarat 26.6 91 0.0031 23.4 4.3 82 46-127 170-268 (275)
405 3ctd_A Putative ATPase, AAA fa 26.4 1.9E+02 0.0065 21.1 7.7 69 29-97 31-107 (213)
406 2rfm_A Putative ankyrin repeat 26.1 1.3E+02 0.0046 20.6 5.3 146 29-190 32-187 (192)
407 3t5v_B Nuclear mRNA export pro 25.9 2.1E+02 0.0072 23.8 6.9 32 170-201 179-210 (455)
408 3mv2_A Coatomer subunit alpha; 25.7 2.5E+02 0.0084 22.1 10.7 50 82-131 187-238 (325)
409 4hbd_A KN motif and ankyrin re 25.6 34 0.0011 25.9 2.1 80 143-229 188-273 (276)
410 2yqf_A Ankyrin-1; death domain 25.5 60 0.002 20.7 2.9 48 219-268 58-105 (111)
411 3bqo_A Telomeric repeat-bindin 24.9 2E+02 0.0068 20.8 8.8 45 151-195 94-145 (211)
412 2xdt_A Endoplasmic reticulum a 24.7 4.1E+02 0.014 24.3 17.4 24 104-127 754-777 (897)
413 2qfz_A TBC1 domain family memb 24.6 2.4E+02 0.0083 22.1 7.0 113 11-127 188-313 (345)
414 3lxu_X Tripeptidyl-peptidase 2 24.5 3.4E+02 0.011 26.3 8.5 74 183-261 1265-1340(1354)
415 1lsh_A Lipovitellin (LV-1N, LV 24.4 4.4E+02 0.015 24.7 18.2 167 11-184 287-471 (1056)
416 3b2a_A TON_1937, putative unch 24.4 1.8E+02 0.0062 21.9 5.5 76 14-93 95-179 (265)
417 2rg8_A Programmed cell death p 24.3 1.8E+02 0.0062 20.1 8.4 58 137-194 12-72 (165)
418 4b4t_S RPN3, 26S proteasome re 24.0 3.3E+02 0.011 23.1 14.8 65 30-94 231-299 (523)
419 2jab_A H10-2-G3; HER2, darpin, 23.9 1.1E+02 0.0039 19.5 4.3 81 34-123 15-100 (136)
420 2qq8_A TBC1 domain family memb 23.6 1.3E+02 0.0045 23.6 5.2 112 11-126 170-292 (334)
421 2cwy_A Hypothetical protein TT 23.6 1.4E+02 0.0047 18.5 4.4 48 43-92 14-66 (94)
422 1bpo_A Protein (clathrin); cla 22.6 3.4E+02 0.012 22.7 11.1 146 42-192 341-494 (494)
423 4g8k_A 2-5A-dependent ribonucl 22.5 1.9E+02 0.0064 22.2 6.0 140 3-159 173-322 (337)
424 1fad_A Protein (FADD protein); 22.3 1E+02 0.0036 19.0 3.6 22 168-189 72-93 (99)
425 3ltj_A Alpharep-4; protein eng 22.3 2E+02 0.0068 19.9 19.3 18 98-115 88-105 (201)
426 1ixm_A SPO0B, protein (sporula 22.0 1.8E+02 0.0063 20.7 5.2 24 35-58 37-60 (192)
427 2p1h_A APAF-1, apoptotic prote 21.8 1.4E+02 0.0049 18.0 5.3 63 14-84 24-86 (94)
428 4f52_E Glomulin; cullin-ring E 21.4 3.9E+02 0.013 23.1 8.0 122 11-146 5-132 (596)
429 1uzc_A Hypothetical protein FL 21.4 1.3E+02 0.0045 17.5 3.5 31 46-76 14-44 (71)
430 2p22_A Suppressor protein STP2 21.1 1.3E+02 0.0044 21.2 4.0 50 63-113 109-158 (174)
431 1wty_A Hypothetical protein TT 21.1 1.7E+02 0.0059 18.7 6.4 12 11-22 4-15 (119)
432 1y1x_A Leishmania major homolo 21.1 2.1E+02 0.0072 19.7 6.6 9 203-211 146-154 (191)
433 2qcx_A Transcriptional activat 21.0 2.7E+02 0.0092 20.9 7.9 13 101-113 181-193 (263)
434 1x87_A Urocanase protein; stru 21.0 46 0.0016 27.8 2.0 46 9-67 212-257 (551)
435 3lxu_X Tripeptidyl-peptidase 2 21.0 5.4E+02 0.018 25.0 9.1 95 33-149 1237-1331(1354)
436 3gvo_A Pumilio 2, pumilio homo 20.9 3.1E+02 0.011 21.5 6.9 194 34-230 38-241 (351)
437 2dod_A Transcription elongatio 20.8 1.5E+02 0.0051 17.8 3.8 11 47-57 17-27 (82)
438 1uwk_A Urocanate hydratase; hy 20.6 46 0.0016 27.9 1.9 46 9-67 217-262 (557)
439 2fkn_A Urocanate hydratase; ro 20.5 47 0.0016 27.8 2.0 46 9-67 213-258 (552)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-38 Score=269.12 Aligned_cols=207 Identities=11% Similarity=0.059 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC---------H
Q 023915 12 EEAKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM---------Y 81 (275)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~---------~ 81 (275)
..+..+...+.+.+..++. ..++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4556667778777766544 46899999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|...|+.|+..+|+++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI------------------- 147 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL------------------- 147 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHH-------------------
Confidence 8899999999999999999999999999999999999999999999988888776655555
Q ss_pred hcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhH
Q 023915 162 SESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTR 241 (275)
Q Consensus 162 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~ 241 (275)
.+|++.|++++|.++|++|.+.|+.||..||++||.+|+ +.|++++|.+++++|++.|+.|+..||
T Consensus 148 -------------~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~-~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 148 -------------FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM-DTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp -------------HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred -------------HHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 555555666666666777777777777777777777776 567777777777777777777777777
Q ss_pred HHHHHHHHHh
Q 023915 242 NLILKNSHLF 251 (275)
Q Consensus 242 ~~li~~~~~~ 251 (275)
++++..|++.
T Consensus 214 ~~l~~~F~s~ 223 (501)
T 4g26_A 214 DMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHSH
T ss_pred HHHHHHHhcC
Confidence 7777777654
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-37 Score=260.58 Aligned_cols=181 Identities=12% Similarity=0.118 Sum_probs=159.9
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCC---------HHHHHHHHHHHhhcCCCCChhhHHHH
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD---------MESVMHVMRKLDELAISPDYNTFHIL 71 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~t~~~l 71 (275)
+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||..||++|
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 378999999999999999999999999999999999999998765 68899999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccch
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 151 (275)
|.+|++.|+++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|...|+.|+..+|+++|.+|
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~------ 185 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS------ 185 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH------
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999876666665555
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 023915 152 KDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYI 213 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 213 (275)
++.|++++|.+++++|++.|+.|+..||+.++..|+
T Consensus 186 --------------------------~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 186 --------------------------MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp --------------------------HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred --------------------------hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 455555556666666666666777777777666665
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=9.2e-24 Score=183.67 Aligned_cols=252 Identities=7% Similarity=-0.069 Sum_probs=142.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.|.+.|++++|.++|+++.+.+.. +..+|+.++.++.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 344444445555544444443322 4444444444444555555555555444432 12345556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++..... .+..+|..+..+|.+.|++++|.++|+++..
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665532 23455666666666666666666666666654432 2344566666666666666666666666544
Q ss_pred --CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCC
Q 023915 164 --SISHPAIKKFASAFVRLGNINLVNDVMKAIHAT----GYRID--QGIFHIAIARYIAEREKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 164 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~ 235 (275)
..++..|+.+...|.+.|++++|.++|+.+.+. +..|+ ..+|..+...|. ..|++++|.++++++.+.+ +
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS-S
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC-C
Confidence 223445666666666666666666666666554 45555 456666666654 5566666666666665543 3
Q ss_pred CChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 236 VDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 236 p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
.+..+|..+..+|.+.|+...+....
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666666666666666444444433
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=6.7e-24 Score=184.53 Aligned_cols=255 Identities=10% Similarity=-0.019 Sum_probs=223.8
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
+..|.+.|++++|.++|+.+.+. .++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 56788999999999999999876 5799999999999999999999999999998765 34778899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
++|..+++++.+.. +.+..+++.+...|.+.|++++|.++|+++..... .+..+|+.++..|.+.|++++|.++|+++
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998653 56788999999999999999999999999876432 24568999999999999999999999998
Q ss_pred hcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC----CCC
Q 023915 162 SES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ----GYV 235 (275)
Q Consensus 162 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~----~~~ 235 (275)
... .+...++.+..+|.+.|++++|.++|+.+.+.. +.+..+|+.+...|+ +.|++++|.++|+++.+. +..
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccc
Confidence 763 345589999999999999999999999998864 346889999999987 779999999999999776 778
Q ss_pred CC--hhhHHHHHHHHHHhhHHHHHHHHhcc
Q 023915 236 VD--SSTRNLILKNSHLFGRQLIADILSKQ 263 (275)
Q Consensus 236 p~--~~t~~~li~~~~~~g~~~~~~~~~~~ 263 (275)
|+ ..+|..+..+|.+.|+...+....+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88 78999999999999976666665544
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=6.7e-24 Score=186.64 Aligned_cols=164 Identities=9% Similarity=0.069 Sum_probs=130.6
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhh---cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDE---LAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSS 105 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (275)
-..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC-HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh--h--HHHHHHHHHHhc
Q 023915 106 LIFHLGKMRA-HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH--P--AIKKFASAFVRL 180 (275)
Q Consensus 106 li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~li~~~~~~ 180 (275)
+|.++|+.|+ .+.|.++|++|...|+.|+..+|++++.+..+.+-++.+.++..++.-.+.+ . +...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 9999999998 4789999999999999999999999997766654444333332222211111 1 334566666655
Q ss_pred C---------ChhHHHHHHHH
Q 023915 181 G---------NINLVNDVMKA 192 (275)
Q Consensus 181 ~---------~~~~a~~~~~~ 192 (275)
+ ..++....|++
T Consensus 286 ~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 286 GRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp SCCCCCCCSSCHHHHHHHHHH
T ss_pred CCCcCccccCCHHHHHHHHHH
Confidence 5 23455555554
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=184.11 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=106.8
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHh---cCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEA---KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 77 (275)
||++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||+||+++++
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK 212 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 58999999999999999998874 589999999999999999999999999999999999999999999999999999
Q ss_pred cCCH-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC
Q 023915 78 EKMY-ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (275)
Q Consensus 78 ~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (275)
.|+. +.|.++|++|.+.|+.||..+|++++.++.+.+
T Consensus 213 ~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9985 789999999999999999999999987666543
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.82 E-value=2.3e-17 Score=136.07 Aligned_cols=251 Identities=12% Similarity=-0.011 Sum_probs=165.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|.+.|+.+.+..+. +..+|..+..++.+.|++++|.+.|+++.+. .|+.. .+..+...+...|++
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCH
Confidence 4677888888888888888775332 4557888888888888888888888877763 35543 345566667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccc-----------------------------
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS----------------------------- 132 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------------------- 132 (275)
++|...|+++.+.. +-+..+|..+...+.+.|++++|...|+++....+.
T Consensus 152 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776652 223556777777777777777777777665532211
Q ss_pred ---c-cHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 023915 133 ---M-CKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 133 ---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
| +..++..+...+...|++++|...++++.. ...+..+..+...+.+.|++++|...|+.+.+.. +.+..+++
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 1 234556666667777777777777776654 2233466677777777777777777777776643 34556677
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHH
Q 023915 207 IAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADIL 260 (275)
Q Consensus 207 ~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~ 260 (275)
.+...+. ..|++++|.+.++++.+. .+.+..++..+...+.+.|+...+...
T Consensus 310 ~l~~~~~-~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 310 NLANIKR-EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776665 667777777777777653 233466777777777777744444433
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.82 E-value=5.2e-17 Score=133.92 Aligned_cols=251 Identities=11% Similarity=0.005 Sum_probs=185.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|...++...+.. +.+..+|+.+..++.+.|++++|++.|+++.+. .|+. .+|..+..++.+.|++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCH
Confidence 35678899999999999988764 347889999999999999999999999999873 4654 5799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++|...|+++.+.. |+ ...+..+...+...|++++|.+.|+.+....+. ....|..+...+...|++++|...|++
T Consensus 118 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 118 EGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998763 54 456777888899999999999999998865432 355788888888888888888888877
Q ss_pred hhcC--C----------------------------------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 023915 161 NSES--I----------------------------------SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI 204 (275)
Q Consensus 161 ~~~~--~----------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 204 (275)
+... . .+..+..+...|...|++++|...|+.+.+.+ +.+..+
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 273 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDA 273 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 5431 1 12244455666666666777777666666542 123456
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhc
Q 023915 205 FHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSK 262 (275)
Q Consensus 205 y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~ 262 (275)
|..+...+. ..|++++|.+.++++.+. .+.+..++..+...+.+.|+...+....+
T Consensus 274 ~~~l~~~~~-~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 274 YCNLANALK-EKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHH-HHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666654 556777777777776554 24456667777777777775555544443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=1.6e-16 Score=133.31 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=102.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|..+|+.+....+. +..+|..+..++...|++++|++.|+++.+.+ +.+..++..+...|.+.|+++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 3456667777777777776654322 56666777777777777777777777666542 123455666666666667777
Q ss_pred HHHHHHHHHHHcCCCCCH----HhHHHHH------------HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEE----ELCSSLI------------FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~----~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
.|...|+++.+. .|+. ..+..+. ..+.+.|++++|...|+.+..... .+...+..+...|.
T Consensus 112 ~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 112 EAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 666666666643 2322 3333332 225555666666666655543221 12334445555555
Q ss_pred hccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 147 SGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
..|++++|...++++.. ...+..+..+...|...|++++|...|+.+..
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555433 22233444455555555555555555554443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=2.1e-16 Score=132.62 Aligned_cols=252 Identities=10% Similarity=-0.073 Sum_probs=202.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHH------
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILI------ 72 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li------ 72 (275)
..+.+.|++++|.+.|+.+.+.++. +..++..+..+|.+.|++++|.+.|+++.+. .|+. ..+..+.
T Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 68 TVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH
Confidence 4678899999999999999987644 6789999999999999999999999999874 4554 4555553
Q ss_pred ------HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 73 ------KYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 73 ------~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
..+.+.|+++.|...|+++.+.. +.+..++..+..+|.+.|++++|...|+.+..... .+...+..+...+.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 44889999999999999998764 45677899999999999999999999999876533 34568889999999
Q ss_pred hccchHHHHHHHHHhhc-CCC-hhHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----hhhHHH
Q 023915 147 SGKLLKDAYVVVKDNSE-SIS-HPAIKKF------------ASAFVRLGNINLVNDVMKAIHATGYRID-----QGIFHI 207 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~-~~~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~y~~ 207 (275)
..|++++|...++++.. .+. +..+..+ ...|...|++++|...|+.+.+. .|+ ...|..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 99999999999999866 232 2234433 78899999999999999998875 355 346777
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhcc
Q 023915 208 AIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSKQ 263 (275)
Q Consensus 208 li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~ 263 (275)
+...+. +.|++++|...++++.... +.+...+..+..+|...|+...+....+.
T Consensus 301 l~~~~~-~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 301 ICHCFS-KDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777776 7799999999999987642 34678999999999999966666555443
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.9e-16 Score=129.44 Aligned_cols=255 Identities=5% Similarity=-0.080 Sum_probs=201.2
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|.+.|+.+....+. +..+|..+...+.+.|++++|++.|++..+.. +.+..++..+...|.+.|+++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHH
Confidence 4577899999999999999987544 78899999999999999999999999998743 234778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHhccCCHHHHHHHHHHHHhcccc-ccHHhHHHHHHHHHhccc
Q 023915 83 LAYRTMVDMHRKGHQPE-----------EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS-MCKALHEKILHILISGKL 150 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~ 150 (275)
+|...|+++.+.. |+ ...+..+...+.+.|++++|...|+.+...... ++...+..+...+...|+
T Consensus 151 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 151 DACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 9999999998753 32 223344588899999999999999998876443 256788999999999999
Q ss_pred hHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHH
Q 023915 151 LKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 151 ~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~ 228 (275)
+++|...+++... ...+..+..+...|...|++++|...|+...+.. +.+..++..+...|. ..|++++|...|++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCI-NLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 9999999999766 3345588999999999999999999999988863 224678888888876 77999999999998
Q ss_pred HhhCC---CC--------CChhhHHHHHHHHHHhhHHHHHHHHhcc
Q 023915 229 MTGQG---YV--------VDSSTRNLILKNSHLFGRQLIADILSKQ 263 (275)
Q Consensus 229 m~~~~---~~--------p~~~t~~~li~~~~~~g~~~~~~~~~~~ 263 (275)
..+.. .. .+...|..+-.++...|+...++...+.
T Consensus 307 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 86531 11 1467889999999999977777666544
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=7.4e-16 Score=125.78 Aligned_cols=255 Identities=8% Similarity=-0.074 Sum_probs=201.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|...|+.+.+..+. +..+|..+..++.+.|++++|.+.|++..+.. +.+..++..+...+...|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4577889999999999999987543 77889999999999999999999999998753 236678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHH---------------HHHHHhccCCHHHHHHHHHHHHhccccc-cHHhHHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSS---------------LIFHLGKMRAHSEALSVYNMLRYSKRSM-CKALHEKILHILI 146 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~ 146 (275)
.|...++++.+.... +...+.. .+..+...|++++|...|+.+....+.. +..++..+...+.
T Consensus 150 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 150 QACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 999999999876422 2222221 2344448899999999999987654432 4678889999999
Q ss_pred hccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHH
Q 023915 147 SGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLK 224 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~ 224 (275)
..|++++|...+++... ...+..+..+...+...|++++|...++...+.. +.+...+..+...|. ..|++++|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI-NLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH-HCCCHHHHHH
Confidence 99999999999999765 3344588899999999999999999999988753 234667888888876 7799999999
Q ss_pred HHHHHhhCC---C-------CCChhhHHHHHHHHHHhhHHHHHHHHhc
Q 023915 225 LLEWMTGQG---Y-------VVDSSTRNLILKNSHLFGRQLIADILSK 262 (275)
Q Consensus 225 l~~~m~~~~---~-------~p~~~t~~~li~~~~~~g~~~~~~~~~~ 262 (275)
.+++..... . .....+|..+..++...|+...+..+.+
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 999886531 1 1126889999999999996666665544
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=5.4e-15 Score=118.61 Aligned_cols=257 Identities=10% Similarity=-0.088 Sum_probs=203.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC-CH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK-MY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~ 81 (275)
..+...|++++|.++|+.+....+. +...+..+..++...|++++|..+++++.+.. +.+...+..+...+...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhH
Confidence 4566789999999999999887543 56677788888999999999999999998742 234567888888999999 99
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+.|...|++..+.. +.+...+..+...+...|++++|...++......... ...+..+...+...|++++|...+++.
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999988654 3356788899999999999999999999887654432 335666888899999999999999997
Q ss_pred hcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 162 SES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATG--------YRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 162 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
... ..+..+..+...+...|++++|...++...+.. .+.+..++..+...|. ..|++++|...+++..+
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKYAEALDYHRQALV 264 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Confidence 763 334477888899999999999999999877641 1233467888888876 77999999999999876
Q ss_pred CCCCCChhhHHHHHHHHHHhhHHHHHHHHhccCC
Q 023915 232 QGYVVDSSTRNLILKNSHLFGRQLIADILSKQHM 265 (275)
Q Consensus 232 ~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~~ 265 (275)
.. +.+...+..+-..+.+.|+...+....+...
T Consensus 265 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 265 LI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred hC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 43 3457788888899999997776666655543
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2.3e-15 Score=120.61 Aligned_cols=255 Identities=10% Similarity=-0.037 Sum_probs=203.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|..+|+.+.+.... +...+..+..++.+.|++++|.+.|++..+.. +.+..++..+...+...|+++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3567889999999999999987544 77889999999999999999999999998752 235678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH-HhHHHH--------------HH-HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEE-ELCSSL--------------IF-HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~-~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
.|...+++..+.. |+. ..+..+ .. .+...|++++|...++........ +...+..+...+.
T Consensus 107 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 183 (327)
T 3cv0_A 107 AALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 9999999998753 332 233333 22 378889999999999998765433 4567888999999
Q ss_pred hccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHH
Q 023915 147 SGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLK 224 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~ 224 (275)
..|++++|...+++... ...+..+..+...+...|++++|...++...+.. +.+..++..+...|. ..|++++|.+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~ 261 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS-NMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-HhccHHHHHH
Confidence 99999999999999765 3344578889999999999999999999988754 235677888888876 7799999999
Q ss_pred HHHHHhhCCCCC-----------ChhhHHHHHHHHHHhhHHHHHHHHhccC
Q 023915 225 LLEWMTGQGYVV-----------DSSTRNLILKNSHLFGRQLIADILSKQH 264 (275)
Q Consensus 225 l~~~m~~~~~~p-----------~~~t~~~li~~~~~~g~~~~~~~~~~~~ 264 (275)
.+++.....-.. +..++..+..++.+.|+...+....+..
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999886642111 4778889999999999877777766543
No 15
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3e-15 Score=118.71 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=176.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
+..-..|++..|+..++......+.+.....-.+.++|...|+++.|+.-++. .-.|+..++..+...+.+.++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34556788899988887765432222234556678889999999998876644 24567778888888899999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
.|++.++++...+..|+ ...+..+-..+.+.|++++|++.++. +.+...+..+...+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999888776564 44556666888899999999998887 345667888888899999999999999988
Q ss_pred hcCCChhHHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 162 SESISHPAIKK----FASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 162 ~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
........... ++..+...|++++|..+|+++.+. .+.+...++.+...+. +.|++++|...+++..... +-+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC-CCC
Confidence 76432222222 334444558899999999998886 3456677888887776 7789999999999876542 335
Q ss_pred hhhHHHHHHHHHHhhHH
Q 023915 238 SSTRNLILKNSHLFGRQ 254 (275)
Q Consensus 238 ~~t~~~li~~~~~~g~~ 254 (275)
..++..+...+...|+.
T Consensus 234 ~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 67888888888888843
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.9e-14 Score=114.31 Aligned_cols=238 Identities=11% Similarity=-0.033 Sum_probs=195.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|..+++.+.+.... +...|..+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 4677889999999999999987543 6788999999999999 9999999999998743 23466788999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+.|...+++..+.. +.+...+..+...|...|++++|...++........ +...+..+...+...|++++|...+++.
T Consensus 142 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 142 DQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999998764 334567777999999999999999999998866433 4567888999999999999999999986
Q ss_pred hc-----------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 162 SE-----------SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 162 ~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
.. ...+..+..+...|...|++++|...++...+.. +.+...+..+...|. ..|++++|.+.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS-LMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH-HHTCHHHHHHHHHTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 55 1223478889999999999999999999988764 235567888888776 7799999999999887
Q ss_pred hCCCCC-ChhhHHHHHHHH
Q 023915 231 GQGYVV-DSSTRNLILKNS 248 (275)
Q Consensus 231 ~~~~~p-~~~t~~~li~~~ 248 (275)
+. .| +...+..+..++
T Consensus 298 ~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp TT--CSCCHHHHHHHHHHH
T ss_pred cc--CCCchHHHHHHHHHH
Confidence 64 45 456666666666
No 17
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.3e-14 Score=115.12 Aligned_cols=224 Identities=9% Similarity=0.038 Sum_probs=176.0
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCC
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKM 80 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~ 80 (275)
..+|...|+++.|+..++. .-.|+..++..+...+...++.++|++.++++...+..|+.. .+..+...+.+.|+
T Consensus 41 ~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 3578889999999987654 235678899999999999999999999999999877767654 45566688999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccH-HhHHHHHHHHHhccchHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK-ALHEKILHILISGKLLKDAYVVVK 159 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 159 (275)
+++|+..+++ +.+...+..+...+.+.|++++|.+.|+.+......... ......+..+...|++++|..+|+
T Consensus 117 ~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~ 190 (291)
T 3mkr_A 117 PDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190 (291)
T ss_dssp HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999988 567789999999999999999999999999876432211 111234445556699999999999
Q ss_pred Hhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHH-HHHHHHHHHhhCCCCC
Q 023915 160 DNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKE-LLLKLLEWMTGQGYVV 236 (275)
Q Consensus 160 ~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~-~a~~l~~~m~~~~~~p 236 (275)
++.. ..++..++.+..++...|++++|...|++..+.. +-+..++..+...+. ..|+.+ .+.++++++.+. .|
T Consensus 191 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~-~~g~~~eaa~~~~~~~~~~--~P 266 (291)
T 3mkr_A 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQ-HLGKPPEVTNRYLSQLKDA--HR 266 (291)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHH--CT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHh--CC
Confidence 9876 3344478889999999999999999999988754 235668888887776 556665 467899888753 46
Q ss_pred Chh
Q 023915 237 DSS 239 (275)
Q Consensus 237 ~~~ 239 (275)
+..
T Consensus 267 ~~~ 269 (291)
T 3mkr_A 267 SHP 269 (291)
T ss_dssp TCH
T ss_pred CCh
Confidence 543
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-14 Score=122.49 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=70.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|.+.|+.+...+ |+...|..+..++.+.|++++|++.|+++.+.+ +.+..+|..+..++.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 35677888888888888888764 688888888888888888888888888887743 233457778888888888888
Q ss_pred HHHHHHHHHHHcC
Q 023915 83 LAYRTMVDMHRKG 95 (275)
Q Consensus 83 ~a~~~~~~m~~~g 95 (275)
+|...|+++.+.+
T Consensus 91 ~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 91 DAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcC
Confidence 8888888876554
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=2.1e-16 Score=129.47 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=39.8
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
+.|++++|.++++++. +..+|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455666666666662 2236666666666666666666666432 555566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS 166 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (275)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55554442 3344556666666666666666655553 133345666666666666666666666654
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHH
Q 023915 167 HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELL 222 (275)
Q Consensus 167 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a 222 (275)
+.|..+...+.+.|+++.|.+.+... .++.+|..++.+|+ ..|+++.|
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv-~~~ef~lA 196 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV-DGKEFRLA 196 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH-HTTCHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHH-HcCcHHHH
Confidence 35555666666666666666655544 14455555555544 44555555
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.67 E-value=5e-13 Score=108.22 Aligned_cols=248 Identities=11% Similarity=-0.083 Sum_probs=127.1
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC---C-hhhHHHH---------
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---D-YNTFHIL--------- 71 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~-~~t~~~l--------- 71 (275)
+...|++++|...|+...+..+. +...|..+...+...|++++|.+.|++..+. .| + ...+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHH
Confidence 33444444444444444443221 3344444444444555555555555444432 23 1 1122222
Q ss_pred ---HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 72 ---IKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 72 ---i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
...+...|+++.|...++++.+.. +.+...+..+...+.+.|++++|...++......+ .+...+..+...+...
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 244445555555555555554432 23344555555566666666666666665554322 2334555566666666
Q ss_pred cchHHHHHHHHHhhc-CCCh-hHHH------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-----hHHHHH
Q 023915 149 KLLKDAYVVVKDNSE-SISH-PAIK------------KFASAFVRLGNINLVNDVMKAIHATGYRIDQG-----IFHIAI 209 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~-~~~~-~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~y~~li 209 (275)
|++++|...+++... .+.. ..+. .+...+...|++++|...++...+.. |+.. .+..+.
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERIC 279 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 666666666666544 1111 1111 12445666777777777777666543 3322 233344
Q ss_pred HHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 210 ARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 210 ~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
..+. ..|++++|...+++..+. .+.+..++..+-..+.+.|+...+....
T Consensus 280 ~~~~-~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 280 HCFS-KDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH-HccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4544 567777787777777654 2335667777777777777555544443
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=1.2e-15 Score=124.97 Aligned_cols=225 Identities=14% Similarity=0.028 Sum_probs=109.0
Q ss_pred ChhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 023915 1 MISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 80 (275)
|..++.+.|++++|++.|... +|..+|..++.++...|++++|+..++..++. .|+..+.+.++.+|.+.|+
T Consensus 38 La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNR 109 (449)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCC
Confidence 456888999999999999653 58889999999999999999999987777663 4667889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+..++++.|++++|.+.+++
T Consensus 110 l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 110 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp HHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 999988885 478889999999999999999999999976 3799999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhh
Q 023915 161 NSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSST 240 (275)
Q Consensus 161 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t 240 (275)
. .++.+|..++.+|+..|+++.|...... +..++.-...++..| .+.|++++|..+++.-.... +--...
T Consensus 174 A---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y-ek~G~~eEai~lLe~aL~le-~ah~~~ 243 (449)
T 1b89_A 174 A---NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY-QDRGYFEELITMLEAALGLE-RAHMGM 243 (449)
T ss_dssp H---TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTST-TCCHHH
T ss_pred c---CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH-HHCCCHHHHHHHHHHHhCCc-HHHHHH
Confidence 8 4678999999999999999999665443 223333455677777 48899999999999876554 445677
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 023915 241 RNLILKNSHLFGRQLIADI 259 (275)
Q Consensus 241 ~~~li~~~~~~g~~~~~~~ 259 (275)
|.-|--+|++.......+.
T Consensus 244 ftel~il~~ky~p~k~~eh 262 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREH 262 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHH
Confidence 7777777777764444333
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=4.1e-14 Score=115.42 Aligned_cols=251 Identities=9% Similarity=-0.038 Sum_probs=187.9
Q ss_pred hhcCcHHHHHH-HHHHHHhcCC---CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 6 CRGGCFEEAKQ-LAGDFEAKYD---KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 6 ~~~g~~~~a~~-~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
.-.|++++|.+ .|+....... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34567777777 6665443221 1145678899999999999999999999998753 34566888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH--------------HHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK--------------ILHILIS 147 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------------li~~~~~ 147 (275)
+.|...|+++.+.. +.+..++..+...|...|++++|...++.+.............. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999999875 45678999999999999999999999999887644333222111 2444458
Q ss_pred ccchHHHHHHHHHhhc-CC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHH
Q 023915 148 GKLLKDAYVVVKDNSE-SI---SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLL 223 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~ 223 (275)
.|++++|...+++... .+ .+..+..+...|...|++++|...++...... +.+..+|..+...+. ..|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~-~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA-NGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-HcCCHHHHH
Confidence 9999999999999766 23 34578889999999999999999999988753 234678888888876 779999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 224 KLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 224 ~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
..+++..... +.+...+..+...+.+.|+...+....
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999987642 345788899999999999555554443
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.65 E-value=5.8e-13 Score=107.80 Aligned_cols=248 Identities=13% Similarity=0.024 Sum_probs=194.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|...|+.+....+. +..++..+...+...|++++|.+.|++..+. .| +...+..+...+.+.|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCCh
Confidence 4577899999999999999987544 6789999999999999999999999999874 35 557788999999999999
Q ss_pred HHHHHHHHHHHHcCCCC----CHHhHHHH------------HHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQP----EEELCSSL------------IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 145 (275)
+.|...|++..+. .| +...+..+ ...+...|++++|.+.++......+ .+...+..+...+
T Consensus 88 ~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 88 DEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 9999999999875 45 33444444 5788899999999999999876543 3456788899999
Q ss_pred HhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHH------------HHH
Q 023915 146 ISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ-GIFHI------------AIA 210 (275)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~------------li~ 210 (275)
...|++++|...+++... ...+..+..+...+...|++++|...++...+.. |+. ..+.. +..
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 3345578889999999999999999999988753 443 22222 233
Q ss_pred HHHHhchhHHHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHHhhHHHHHHHHh
Q 023915 211 RYIAEREKKELLLKLLEWMTGQGYVVDS-----STRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 211 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~-----~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
.+. ..|++++|...+++..... |+. ..+..+-..+.+.|+...+....
T Consensus 243 ~~~-~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 243 ELI-RDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 454 6799999999999987743 442 23444667777888544444443
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-13 Score=106.07 Aligned_cols=216 Identities=12% Similarity=0.024 Sum_probs=177.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCC----hhhHHHHHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA--ISPD----YNTFHILIKYFC 76 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~li~~~~ 76 (275)
..+...|++++|...|+...+.. .+...|..+..++...|++++|.+.|++..+.. ..|+ ..++..+...+.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 35778899999999999999887 688999999999999999999999999988632 1122 478889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (275)
+.|+++.|...|++..+. .|+. ..+.+.|++++|...++........ ....+..+...+...|++++|..
T Consensus 91 ~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999875 3543 3466678899999999988765433 44578888889999999999999
Q ss_pred HHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 157 VVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 157 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
.+++... ...+..+..+...|...|++++|...++...+.. +.+...|..+...+. ..|++++|.+.+++..+.
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI-AVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 9999766 3345578889999999999999999999988864 234667887888776 779999999999987653
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.4e-14 Score=119.69 Aligned_cols=249 Identities=8% Similarity=-0.091 Sum_probs=197.4
Q ss_pred hcCcHHHHHHHHHHHHh-----cCC--------CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEA-----KYD--------KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK 73 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 73 (275)
+.|++++|..+|+.+.. ... ..+..++..+...+...|++++|.+.|+++.+.. |+..++..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 48999999999999887 311 2245678889999999999999999999998754 55778889999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHH
Q 023915 74 YFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD 153 (275)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 153 (275)
.+...|+++.|...+++..+.. +.+..++..+...+...|++++|...++........ +...+..+...+...|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988653 345678889999999999999999999988765443 34577888889999999999
Q ss_pred HHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHHh---chhHHHHH
Q 023915 154 AYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGY-RID----QGIFHIAIARYIAE---REKKELLL 223 (275)
Q Consensus 154 a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~y~~li~~~~~~---~~~~~~a~ 223 (275)
|...+++... ...+..+..+...+...|++++|...++.+.+..- .|+ ...+..+...+. . .|++++|.
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHH
Confidence 9999998765 23445788888999999999999999998876421 111 237777887776 6 79999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 224 KLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 224 ~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
..+++..... +.+..++..+...+.+.|+...+....
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987642 345677888888888888555554443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=1.2e-13 Score=112.77 Aligned_cols=225 Identities=10% Similarity=-0.029 Sum_probs=177.2
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|+++.|...|++..+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568999999999999999999999998753 3456789999999999999999999999998864 445789999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcccccc---------HHhHHHHHHHHHhccchHHHHHHHHHhhc-CC---ChhHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMC---------KALHEKILHILISGKLLKDAYVVVKDNSE-SI---SHPAIKKFAS 175 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~---------~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~li~ 175 (275)
.|.+.|++++|...|+.+........ ...+..+...+...|++++|...+++... .+ .+..+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999999876432211 12234457888999999999999999876 22 4558889999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHH
Q 023915 176 AFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQL 255 (275)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 255 (275)
.|...|++++|...|+...+.. +.+..+|..+...|. ..|++++|...|++..+.. +.+..++..+-..|.+.|+..
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999988864 335678888888886 7799999999999987742 334788999999999988444
Q ss_pred HHH
Q 023915 256 IAD 258 (275)
Q Consensus 256 ~~~ 258 (275)
.+.
T Consensus 299 ~A~ 301 (365)
T 4eqf_A 299 EAV 301 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=1e-13 Score=111.01 Aligned_cols=221 Identities=9% Similarity=0.001 Sum_probs=177.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh-HHHH----------
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT-FHIL---------- 71 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l---------- 71 (275)
..+.+.|++++|.+.|+...+.... +..++..+...+...|++++|.+.|++..+. .|+... +..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 139 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDL 139 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHH
Confidence 4678899999999999999987543 7788999999999999999999999999874 344333 2222
Q ss_pred ----HH-HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 72 ----IK-YFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 72 ----i~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
.. .+...|+++.|...++++.+.. +.+..++..+...+.+.|++++|...++....... .+...+..+...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLA 217 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 22 3778899999999999998764 44678899999999999999999999999876543 24567888999999
Q ss_pred hccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHH
Q 023915 147 SGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRI-----------DQGIFHIAIARYI 213 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~~y~~li~~~~ 213 (275)
..|++++|...+++... ...+..+..+...|...|++++|...++......-.. +...|..+...+.
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 99999999999999766 3345578889999999999999999999987753111 3567888888876
Q ss_pred HhchhHHHHHHHHHHH
Q 023915 214 AEREKKELLLKLLEWM 229 (275)
Q Consensus 214 ~~~~~~~~a~~l~~~m 229 (275)
..|+.++|..++++.
T Consensus 298 -~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 298 -VMNRPDLVELTYAQN 312 (327)
T ss_dssp -HTTCHHHHHHHTTCC
T ss_pred -hcCCHHHHHHHHHHH
Confidence 779999999988743
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.6e-12 Score=98.19 Aligned_cols=212 Identities=8% Similarity=-0.020 Sum_probs=163.0
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+++.|...+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56678888889999999999999999888743 2346678888889999999999999999988764 346678888899
Q ss_pred HHhcc-CCHHHHHHHHHHHHhccccc-cHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChh
Q 023915 109 HLGKM-RAHSEALSVYNMLRYSKRSM-CKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNIN 184 (275)
Q Consensus 109 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 184 (275)
.+... |++++|...++.....+..| ....+..+...+...|++++|...+++... ...+..+..+...+...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 99999999999888732222 345677888889999999999999988765 233457788888999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 023915 185 LVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLIL 245 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li 245 (275)
+|...++...+..-..+...+..+...+ ...|+.+++..+++.+... .|+......++
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIA-KALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 9999999887754213555666555554 4778899999999888653 36555444443
No 29
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.60 E-value=5.9e-13 Score=114.01 Aligned_cols=250 Identities=8% Similarity=-0.067 Sum_probs=177.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+.+.|++++|.+.|+.+....+. +...|..+..++.+.|++++|++.|++..+.+ +.+..++..+...+...|+++.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 566778888888888888876543 67788888888888888888888888877643 2235567777777777787777
Q ss_pred HHHHHHHHHHc---------------------------------------------------------------------
Q 023915 84 AYRTMVDMHRK--------------------------------------------------------------------- 94 (275)
Q Consensus 84 a~~~~~~m~~~--------------------------------------------------------------------- 94 (275)
|...|+.+...
T Consensus 112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 77766422100
Q ss_pred --------------------------------------CCCCC--------HHhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 95 --------------------------------------GHQPE--------EELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 95 --------------------------------------g~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
...|+ ..++..+...+...|++++|...|+....
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 11222 12345555667777888888888888776
Q ss_pred ccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 023915 129 SKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 129 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
.... ...+..+...+...|++++|...+++... ...+..+..+...+...|++++|...++...+.. +.+...+.
T Consensus 272 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 348 (537)
T 3fp2_A 272 LHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYI 348 (537)
T ss_dssp HCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHH
T ss_pred cCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 5443 56677788888888999999999988765 3344577888888999999999999999888754 22456777
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHH
Q 023915 207 IAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADIL 260 (275)
Q Consensus 207 ~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~ 260 (275)
.+...+. ..|++++|...+++..+.. +.+...+..+...+...|+...+...
T Consensus 349 ~la~~~~-~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 349 QLACLLY-KQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 7777775 7789999999999887652 34467888888888888855544443
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.6e-12 Score=100.38 Aligned_cols=209 Identities=11% Similarity=-0.035 Sum_probs=169.3
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678899999999999999999999988753 2356788899999999999999999999998764 3467788899999
Q ss_pred HhccCCHHHHHHHHHHHHhccccc-cHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHH
Q 023915 110 LGKMRAHSEALSVYNMLRYSKRSM-CKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLV 186 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 186 (275)
|...|++++|.+.++.....+..| ....+..+...+...|++++|...+++... ...+..+..+...|...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988733333 455778888899999999999999998766 23455788889999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHH
Q 023915 187 NDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLI 244 (275)
Q Consensus 187 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~l 244 (275)
...++...+.. +.+...+..+...+. ..|+.++|.+.++++.+. .|+...+..+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAK-VFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 99999987743 345566777777765 779999999999998764 3554444333
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=1.5e-12 Score=98.40 Aligned_cols=202 Identities=9% Similarity=-0.032 Sum_probs=166.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc-CCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE-KMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-~~~ 81 (275)
..+...|++++|.+.|+...+.... +...|..+...+...|++++|.+.|++..+.. +.+..++..+...+... |++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcH
Confidence 4678899999999999999886543 67889999999999999999999999998743 23567888999999999 999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
+.|...++++.+.+..|+ ...+..+...+.+.|++++|...++........ +...+..+...+...|++++|...+++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998434444 568888999999999999999999998765432 355788899999999999999999998
Q ss_pred hhc--C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 023915 161 NSE--S-ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAI 209 (275)
Q Consensus 161 ~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li 209 (275)
... . ..+..+..+...+...|+.+.+...++.+.+. .|+...+..++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 765 3 44557778888889999999999999998764 36665554443
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=6.5e-13 Score=102.56 Aligned_cols=200 Identities=9% Similarity=-0.001 Sum_probs=166.1
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+...|++++|.+.|+.+...... +...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHH
Confidence 4577899999999999999886433 67889999999999999999999999998753 235678889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+|..+++++.+.+..| +...+..+...+.+.|++++|...++........ +...+..+...+...|++++|...+++.
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998744455 4567888999999999999999999998765432 3567888999999999999999999997
Q ss_pred hcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 023915 162 SES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHI 207 (275)
Q Consensus 162 ~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~ 207 (275)
... .....+..+...+...|++++|...++.+.+.. |+...+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQE 247 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 762 334467788899999999999999999998853 55554443
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=4.5e-12 Score=99.24 Aligned_cols=214 Identities=12% Similarity=-0.016 Sum_probs=179.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc--
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK-- 77 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-- 77 (275)
.+.+.|++++|.+.|+...+.+ +...+..+-..|.. .+++++|++.|++..+.+ +...+..+...|..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCC
Confidence 4667899999999999988732 55778888888999 999999999999998876 67788888888998
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh----
Q 023915 78 --EKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS---- 147 (275)
Q Consensus 78 --~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 147 (275)
.+++++|...|++..+.+ +..++..+-..|.. .+++++|...|+.....+ +...+..+-..|..
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCC
Confidence 999999999999998875 66788888888988 999999999999888765 34456677777777
Q ss_pred ccchHHHHHHHHHhhcCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHh----chhH
Q 023915 148 GKLLKDAYVVVKDNSESISHPAIKKFASAFVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAE----REKK 219 (275)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~----~~~~ 219 (275)
.+++++|...+++..+...+..+..+...|.. .+++++|...|+...+.+ | ...+..+-..|. . .++.
T Consensus 163 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~-~g~~~~~~~ 238 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQY-NGEGVTRNE 238 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHH-TTSSSSCCS
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHH-cCCCcccCH
Confidence 89999999999998887777788888899999 999999999999988864 2 556666766665 5 6788
Q ss_pred HHHHHHHHHHhhCC
Q 023915 220 ELLLKLLEWMTGQG 233 (275)
Q Consensus 220 ~~a~~l~~~m~~~~ 233 (275)
++|.+.|++..+.|
T Consensus 239 ~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 239 KQAIENFKKGCKLG 252 (273)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 88999999887754
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=3.6e-12 Score=109.12 Aligned_cols=247 Identities=8% Similarity=-0.044 Sum_probs=186.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCc------HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 9 GCFEEAKQLAGDFEAKYDKYD------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
|++++|..+|+.+.+..+... ..+|..+...+...|++++|.+.|++..+. .|+...+..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 588999999999887643311 335777778888899999999999999874 477788888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
.|...+++..+.. +.+..++..+...+...|++++|...++........ +...+..+...+...|++++|...+++..
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988764 345678889999999999999999999988765433 33567888889999999999999999876
Q ss_pred c--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHHhc----------hhHHHHHHH
Q 023915 163 E--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGY-----RIDQGIFHIAIARYIAER----------EKKELLLKL 225 (275)
Q Consensus 163 ~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~y~~li~~~~~~~----------~~~~~a~~l 225 (275)
. ...+..+..+...+...|++++|...|+...+..- ......+......+. .. |++++|...
T Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA-RQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH-HHHTC----CCHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH-HHhhccchhhhHhHHHHHHHH
Confidence 6 23344778888999999999999999998776421 011112223333443 45 889999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHh
Q 023915 226 LEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILS 261 (275)
Q Consensus 226 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~ 261 (275)
+++..+.. +.+...+..+...+.+.|+...+....
T Consensus 451 ~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 451 LTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99887642 345678888888888888555554443
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.9e-12 Score=100.98 Aligned_cols=230 Identities=9% Similarity=-0.056 Sum_probs=177.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHHccCC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCKEKM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~ 80 (275)
..+.+.|++++|...|+...+..+. +...+..+..++...|++++|++.|++..+.+-.|+. ..|..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 3577899999999999999987543 5668999999999999999999999999884422222 238899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++.|...|++..+.. +.+..++..+...|...|++++|...|+........ +...+..+-..+...+++++|...+++
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764 345678999999999999999999999988765332 344555555234445599999999999
Q ss_pred hhcC-C-ChhHHHHHHHHHHhcCC---hhHHHHHHHHHHHc-CCCCCh------hhHHHHHHHHHHhchhHHHHHHHHHH
Q 023915 161 NSES-I-SHPAIKKFASAFVRLGN---INLVNDVMKAIHAT-GYRIDQ------GIFHIAIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 161 ~~~~-~-~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-g~~p~~------~~y~~li~~~~~~~~~~~~a~~l~~~ 228 (275)
.... + ....+..+...+...|+ +++|...++...+. .-.|+. .+|..+-..|. ..|++++|.+.+++
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT-INRDKVKADAAWKN 246 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 7762 2 34466677788888888 88898888887664 122432 46666777765 67999999999999
Q ss_pred HhhCCCCCCh
Q 023915 229 MTGQGYVVDS 238 (275)
Q Consensus 229 m~~~~~~p~~ 238 (275)
..+. .|+.
T Consensus 247 al~~--~p~~ 254 (272)
T 3u4t_A 247 ILAL--DPTN 254 (272)
T ss_dssp HHHH--CTTC
T ss_pred HHhc--CccH
Confidence 8764 3543
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=2e-12 Score=100.89 Aligned_cols=224 Identities=11% Similarity=-0.090 Sum_probs=175.1
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCC---CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDK---YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
....|++++|++.|+.+.+.... .+..+|..+...+...|++++|.+.|++..+.. +.+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 45679999999999999986421 246789999999999999999999999998753 23577899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+.|...|++..+.. +.+..++..+...|.+.|++++|...|+......... ......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND--PFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999863 3457789999999999999999999999987653332 23344445556779999999999776
Q ss_pred hc-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C-ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 162 SE-SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYR--I-DQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 162 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
.. .+..+....+...+...++.++|...+......... | +...+..+...|. ..|++++|...|++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL-SLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCC
Confidence 55 333333445777788888889999998877653211 1 1467777887776 7799999999999998753
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.3e-12 Score=99.45 Aligned_cols=218 Identities=8% Similarity=-0.061 Sum_probs=177.7
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----HHh
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGH--QPE----EEL 102 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~ 102 (275)
....|..+-..+...|++++|++.|++..+.. ++...+..+...+...|+++.|...+++..+... .|+ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999877 8888999999999999999999999999886431 122 578
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHhc
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS--HPAIKKFASAFVRL 180 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~~ 180 (275)
+..+...+.+.|++++|...|+........ -..+...|++++|...+++...... +..+..+...+...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 899999999999999999999998764433 2356677899999999998776322 23677888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHH
Q 023915 181 GNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADIL 260 (275)
Q Consensus 181 ~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~ 260 (275)
|++++|...++...+.. +.+..+|..+...|. ..|++++|...+++..+.. +.+...+..+-..+.+.|+...+...
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999988864 335677888888876 7799999999999987753 34578888888999998855444443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.1e-12 Score=99.46 Aligned_cols=198 Identities=10% Similarity=-0.035 Sum_probs=133.9
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSS 105 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (275)
+++...+..+-..+.+.|++++|...|++..+. .| +...+..+...+.+.|++++|...+++..+.. +-+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 346677788888888888888888888887763 34 35567777788888888888888888887753 334567777
Q ss_pred HHHHHhcc-----------CCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChhHHHHH
Q 023915 106 LIFHLGKM-----------RAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SISHPAIKKF 173 (275)
Q Consensus 106 li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l 173 (275)
+-..+.+. |++++|...|+......+. +...+..+-..+...|++++|+..|++... ...+..+..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 88888888 8888888888877654333 344677777788888888888888887654 2344467778
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 174 ASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 174 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
...|...|++++|...|+...+.. +-+...+..+...+. ..|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL-LKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-C---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HccCHHHHHHHHHHHh
Confidence 888888888888888888877753 224456666666664 7788888888887654
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=3.1e-12 Score=98.00 Aligned_cols=200 Identities=13% Similarity=0.011 Sum_probs=118.1
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
..+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|+++.|...+++..+.. +.+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3455666777777777777777777777776532 2345566677777777777777777777776653 3345667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChh
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNIN 184 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 184 (275)
...+...|++++|.+.++........ +...+..+...+...|++++|...+++... ...+..+..+...+...|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777776654322 344566677777777777777777777654 223446666777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 185 LVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
+|...++...+.. +.+..++..+...|. ..|++++|.+.+++..+
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYA-YKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHH-HccCHHHHHHHHHHHHc
Confidence 7777777766643 224556666666665 56777777777777765
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=4.3e-12 Score=96.09 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=126.1
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHcc----
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKE---- 78 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~---- 78 (275)
.+.+.|++++|...|+...+..+. +...|..+-..+.+.|++++|+..|++..+. .|+ ...+..+...+.+.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhhh
Confidence 466778888888888888776443 6677788888888888888888888887763 354 45677777778888
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccch
Q 023915 79 -------KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (275)
Q Consensus 79 -------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 151 (275)
|++++|...+++..+.. +-+...+..+-..+...|++++|...|++..... .+...+..+-..+...|++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCH
T ss_pred hhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCH
Confidence 88888888888877653 2345677777788888888888888888777665 5566777788888888888
Q ss_pred HHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 152 KDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 152 ~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
++|...+++... ..++..+..+...+...|++++|...++...
T Consensus 168 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 168 DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888887655 2334466777778888888888888776543
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=3.3e-12 Score=97.83 Aligned_cols=191 Identities=14% Similarity=0.048 Sum_probs=153.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|...|+...+.... +...+..+...+...|++++|++.|++..+.. +.+...+..+...+...|+++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp -----------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHH
Confidence 3567889999999999999886443 67889999999999999999999999988753 235678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
.|...++++.+.. +.+...+..+...+.+.|++++|...++........ +...+..+...+...|++++|...+++..
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998764 456778899999999999999999999998765332 45578888999999999999999999876
Q ss_pred c--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 163 E--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 163 ~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
. ...+..+..+...|...|++++|...++...+..
T Consensus 187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 6 2334578889999999999999999999988853
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=5e-11 Score=97.83 Aligned_cols=236 Identities=9% Similarity=0.016 Sum_probs=182.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~ 81 (275)
.+.+.|++++|++.|+........ +...|+.+-.++...|+ +++|++.|++..+. .| +...|..+-..+.+.|++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHccCH
Confidence 466789999999999999987554 67889999999999997 99999999999884 45 456788999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh-ccchHHH-----H
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS-GKLLKDA-----Y 155 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~ 155 (275)
++|+..|+++.+.. +-+..+|..+-.++.+.|++++|+..|+.+....+. +...|+.+-..+.. .|..++| +
T Consensus 183 ~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 183 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 99999999999864 446779999999999999999999999998876544 44578888888888 6665777 4
Q ss_pred HHHHHhhc--CCChhHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc-------h-hHHHHH
Q 023915 156 VVVKDNSE--SISHPAIKKFASAFVRLG--NINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER-------E-KKELLL 223 (275)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~-------~-~~~~a~ 223 (275)
..+++... ..+...|+.+...+...| ++++|.+.+..+ +. -..+...+..+...|.... + ..++|.
T Consensus 261 ~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~ 338 (382)
T 2h6f_A 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338 (382)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 77777654 333447777788888888 689999998887 32 2334567788888876432 2 358899
Q ss_pred HHHHHH-hhCCCCCC-hhhHHHHHHHH
Q 023915 224 KLLEWM-TGQGYVVD-SSTRNLILKNS 248 (275)
Q Consensus 224 ~l~~~m-~~~~~~p~-~~t~~~li~~~ 248 (275)
++++++ .+ +.|. ...|..+...+
T Consensus 339 ~~~~~l~~~--~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 339 ELCEILAKE--KDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCchhHHHHHHHHHHH
Confidence 999998 44 3454 34555555444
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.2e-11 Score=96.41 Aligned_cols=213 Identities=10% Similarity=0.003 Sum_probs=162.2
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+...|++++|...|+........ +..+|..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|+++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHH
Confidence 4677899999999999999987544 78899999999999999999999999998842 224678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
+|...|+++.+. .|+.......+..+...|++++|...++........ +...+ .+...+...++.++|...+.+..
T Consensus 129 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 129 LAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 999999999875 455555555556667789999999999877654322 22233 46677778888899999999876
Q ss_pred cCCC------hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHH
Q 023915 163 ESIS------HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLL 226 (275)
Q Consensus 163 ~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~ 226 (275)
.... ...+..+...|...|++++|...|+...... |+... ....++. ..|++++|.+-+
T Consensus 205 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~--~~~~~~~-~l~~~~~a~~~~ 269 (275)
T 1xnf_A 205 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHNFV--EHRYALL-ELSLLGQDQDDL 269 (275)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTTCH--HHHHHHH-HHHHHHHC----
T ss_pred cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chhHH--HHHHHHH-HHHHHHhhHHHH
Confidence 6332 3467788899999999999999999988753 53322 2233443 568888777665
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.5e-10 Score=92.29 Aligned_cols=215 Identities=7% Similarity=-0.007 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHH-------ccCCH-------HHHHHHHHHHhhcCCCCC-hhhHHHHHHHHH
Q 023915 12 EEAKQLAGDFEAKYDKYDVVLLNSMLCAYC-------RTGDM-------ESVMHVMRKLDELAISPD-YNTFHILIKYFC 76 (275)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~ 76 (275)
++|..+|+......+. +...|..+...+. +.|++ ++|..+|++..+. +.|+ ...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 7888999999886433 6778888877775 35886 8999999998873 2465 457899999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC-HH-hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH-HHhccchHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPE-EE-LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI-LISGKLLKD 153 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~ 153 (275)
+.|+++.|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|+........ +...|...... +...|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999874 554 33 7999999999999999999999998876433 23344433322 223799999
Q ss_pred HHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHHhchhHHHHHHHHHH
Q 023915 154 AYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATG-YRID--QGIFHIAIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 154 a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~y~~li~~~~~~~~~~~~a~~l~~~ 228 (275)
|..+|++... ...+..+..++..+.+.|++++|..+|+...... +.|+ ...|..++..+. ..|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-NIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-HHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 9999998765 3445578889999999999999999999998863 4553 456777776654 67999999999999
Q ss_pred HhhC
Q 023915 229 MTGQ 232 (275)
Q Consensus 229 m~~~ 232 (275)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2.3e-10 Score=89.46 Aligned_cols=206 Identities=11% Similarity=-0.061 Sum_probs=171.9
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
+..++..+-..+...|++++|++.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888888999999999999999999883 345677788888999 999999999999999876 677888
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh----ccchHHHHHHHHHhhcCCChhHHHHHHHH
Q 023915 105 SLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLLKDAYVVVKDNSESISHPAIKKFASA 176 (275)
Q Consensus 105 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 176 (275)
.+-..|.. .+++++|...|+.....+ +...+..+-..|.. .+++++|...+++..+..++..+..+-..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 89999998 999999999999988765 45577788888888 99999999999998887777788888888
Q ss_pred HHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHh----chhHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 023915 177 FVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAE----REKKELLLKLLEWMTGQGYVVDSSTRNLILKNS 248 (275)
Q Consensus 177 ~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~----~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~ 248 (275)
|.. .+++++|...|+...+.+ +...+..+-..|. . .+++++|...+++..+.+- ...+..+-..|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH-HGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 888 899999999999988864 4566777777775 5 7899999999999887642 45555555555
Q ss_pred HH
Q 023915 249 HL 250 (275)
Q Consensus 249 ~~ 250 (275)
..
T Consensus 229 ~~ 230 (273)
T 1ouv_A 229 YN 230 (273)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.9e-11 Score=97.00 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=101.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhc-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-------AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK------G 95 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~------g 95 (275)
+..++..+...+...|++++|..+|+++.+. .......++..+...+...|+++.|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666777777777777777777766652 12223445666666777777777777777776543 2
Q ss_pred CCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-------ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC---
Q 023915 96 HQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-------RSMCKALHEKILHILISGKLLKDAYVVVKDNSES--- 164 (275)
Q Consensus 96 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 164 (275)
-.| ...++..+...|...|++++|...++...... .+.....+..+...+...|++++|...+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222 23456666677777777777777777655431 1223345566666677777777777777665432
Q ss_pred ---CChh----HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 165 ---ISHP----AIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 165 ---~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
...+ .+..+...|...|++++|...++...+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 455566677777777777777766554
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=4e-11 Score=101.49 Aligned_cols=211 Identities=10% Similarity=-0.056 Sum_probs=165.8
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCH-HHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHH
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM-ESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~ 87 (275)
.++++++.+++..... ..+...+..+-.++...|++ ++|++.|++..+. .|+ ...|..+...|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4667777777665543 23778888999999999999 9999999998874 354 67888999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhcc---------CCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc--------cc
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLGKM---------RAHSEALSVYNMLRYSKRSMCKALHEKILHILISG--------KL 150 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~ 150 (275)
|++..+. .|+...+..+-..|... |++++|...|++....... +...|..+-..|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 9998875 47778888899999998 9999999999988765433 355778888888888 89
Q ss_pred hHHHHHHHHHhhc-C----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhchhHHHHHH
Q 023915 151 LKDAYVVVKDNSE-S----ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID-QGIFHIAIARYIAEREKKELLLK 224 (275)
Q Consensus 151 ~~~a~~~~~~~~~-~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~~~~~~~a~~ 224 (275)
+++|...|++... . ..+..+..+...|...|++++|...|+...+.. |+ ...+..+-..+. ..|++++|.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~-~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLE-FLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999998766 3 345578888899999999999999999887753 44 445666666654 6688888877
Q ss_pred HHHHH
Q 023915 225 LLEWM 229 (275)
Q Consensus 225 l~~~m 229 (275)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 65444
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.2e-11 Score=102.45 Aligned_cols=254 Identities=11% Similarity=-0.031 Sum_probs=188.3
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHccCCHHHHHHHHHHHhhc----CC-CCChhhHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDEL----AI-SPDYNTFHILIKY 74 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~li~~ 74 (275)
.+...|++++|...|+...+.+.. +. ..|..+...+...|++++|.+.|++..+. +- .....++..+...
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 567889999999999999987443 32 57889999999999999999999987653 21 2234578888899
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhccCC-----------------HHHHHHHHHHHHhc---
Q 023915 75 FCKEKMYILAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRA-----------------HSEALSVYNMLRYS--- 129 (275)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~--- 129 (275)
|...|+++.|...+++..+. +-.| ...++..+...|...|+ +++|...+++....
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987753 2122 24478888899999999 99999998876542
Q ss_pred --cccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcCChhHHHHHHHHHHHcC--
Q 023915 130 --KRSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLGNINLVNDVMKAIHATG-- 197 (275)
Q Consensus 130 --~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g-- 197 (275)
........+..+-..+...|++++|...+++... ..... .+..+...|...|++++|...++......
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1222334677888899999999999999998654 12222 67788899999999999999998876531
Q ss_pred --CC-CChhhHHHHHHHHHHhchhHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHHhhHHHHHHH
Q 023915 198 --YR-IDQGIFHIAIARYIAEREKKELLLKLLEWMTGQ----GYV-VDSSTRNLILKNSHLFGRQLIADI 259 (275)
Q Consensus 198 --~~-p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~----~~~-p~~~t~~~li~~~~~~g~~~~~~~ 259 (275)
-. ....++..+...|. ..|++++|...+++.... +-. ....++..+-..+.+.|+...+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYT-LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11 11356777777775 779999999999987643 111 124577777788888884444433
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.5e-11 Score=95.44 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=160.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHhc-------CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc------CCCC-ChhhH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAK-------YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AISP-DYNTF 68 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~ 68 (275)
..+...|++++|..+|+...+. .......++..+...+...|++++|.+.|++..+. +-.| ...++
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4677899999999999998873 23335678899999999999999999999998764 2223 35678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc------c-cccc
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRK------GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS------K-RSMC 134 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~~~ 134 (275)
..+...+...|+++.|...+++..+. +-.| ...++..+...+...|++++|...++..... + .+..
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 194 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 89999999999999999999998864 3333 3457888999999999999999999988754 1 2233
Q ss_pred HHhHHHHHHHHHhccchHHHHHHHHHhhcCC--------C--h-h------HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 135 KALHEKILHILISGKLLKDAYVVVKDNSESI--------S--H-P------AIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~--~-~------~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
...+..+...+...|++++|...+++..... . . . .+..+...+...+.+.++...+.......
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 4577888999999999999999999866411 0 0 1 12223344445556666666666655422
Q ss_pred CCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 198 YRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 198 ~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
+.+..++..+...|. ..|++++|.+.+++..+
T Consensus 275 -~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 275 -PTVTTTLKNLGALYR-RQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 224457788888876 77999999999998754
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=5.2e-11 Score=95.17 Aligned_cols=258 Identities=9% Similarity=-0.072 Sum_probs=189.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCC-hhhHHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHILIKYF 75 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~ 75 (275)
.+...|++++|...|+...+...... ...|..+...+...|++++|.+.+++..+. +-.|. ..++..+...+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 56788999999999999998743311 467889999999999999999999887642 22222 45678888999
Q ss_pred HccCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHhccCC--------------------HHHHHHHHHHHHhc-
Q 023915 76 CKEKMYILAYRTMVDMHRKGH-QPE----EELCSSLIFHLGKMRA--------------------HSEALSVYNMLRYS- 129 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~- 129 (275)
...|+++.|...+++..+... .++ ..++..+...+...|+ +++|...++.....
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999765321 122 3477888889999999 99999998876532
Q ss_pred ---c-ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 023915 130 ---K-RSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLGNINLVNDVMKAIHAT- 196 (275)
Q Consensus 130 ---~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~- 196 (275)
+ .......+..+...+...|++++|...+++... ...++ .+..+...+...|++++|...++...+.
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 222344677788889999999999999988654 22222 5677888999999999999999886653
Q ss_pred ---CCCCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHHhhHHHHHHHHhc
Q 023915 197 ---GYRID-QGIFHIAIARYIAEREKKELLLKLLEWMTGQ----GYV-VDSSTRNLILKNSHLFGRQLIADILSK 262 (275)
Q Consensus 197 ---g~~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~----~~~-p~~~t~~~li~~~~~~g~~~~~~~~~~ 262 (275)
+-.+. ..++..+...|. ..|++++|...+++.... +-. ....++..+-..+.+.|+...+....+
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 11111 346666777765 779999999999887543 111 124577778888888886555554443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=2.6e-10 Score=88.83 Aligned_cols=226 Identities=9% Similarity=-0.042 Sum_probs=166.1
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHhHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE--EELCSSL 106 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l 106 (275)
...+...-..+...|++++|++.|++..+. .|+ ...+..+...+...|+++.|...+++..+.+-.|+ ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 345566677888999999999999999874 354 44888999999999999999999999998432222 2348889
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC-C-ChhHHHHHHHHHHhcCChh
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES-I-SHPAIKKFASAFVRLGNIN 184 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~ 184 (275)
...+.+.|++++|...|+........ ....+..+-..+...|++++|...+++.... + .+..+..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865433 3457889999999999999999999998763 2 3335556663445556999
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhchh---HHHHHHHHHHHhhCC-CCCC------hhhHHHHHHHHHHhhH
Q 023915 185 LVNDVMKAIHATGYRID-QGIFHIAIARYIAEREK---KELLLKLLEWMTGQG-YVVD------SSTRNLILKNSHLFGR 253 (275)
Q Consensus 185 ~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~~~~---~~~a~~l~~~m~~~~-~~p~------~~t~~~li~~~~~~g~ 253 (275)
+|...|+...+.. |+ ...+..+...+. ..++ +++|...+++..+.. -.|+ ..+|..+-..+...|+
T Consensus 160 ~A~~~~~~a~~~~--p~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 160 KADSSFVKVLELK--PNIYIGYLWRARANA-AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHH-HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHH-HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999988853 44 456666666655 4465 666777777765431 1233 2567777777888885
Q ss_pred HHHHHHHh
Q 023915 254 QLIADILS 261 (275)
Q Consensus 254 ~~~~~~~~ 261 (275)
...|....
T Consensus 237 ~~~A~~~~ 244 (272)
T 3u4t_A 237 KVKADAAW 244 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=6.9e-11 Score=97.32 Aligned_cols=255 Identities=9% Similarity=-0.074 Sum_probs=187.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCC-hhhHHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHILIKYF 75 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~ 75 (275)
.+.+.|++++|...|+.....+.... ..+|..+...+...|++++|...|++..+. +-.|. ..++..+...+
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 56788999999999999998744311 367889999999999999999999887542 22232 45678888999
Q ss_pred HccCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHhccCC--------------------HHHHHHHHHHHHhc-
Q 023915 76 CKEKMYILAYRTMVDMHRKGH-QPE----EELCSSLIFHLGKMRA--------------------HSEALSVYNMLRYS- 129 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~- 129 (275)
...|+++.|...+++..+... .++ ..++..+...|...|+ +++|...++.....
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875311 112 3478888889999999 99999998876542
Q ss_pred ---c-ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 023915 130 ---K-RSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLGNINLVNDVMKAIHAT- 196 (275)
Q Consensus 130 ---~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~- 196 (275)
+ .......+..+-..+...|++++|...+++... .+.++ .+..+...|...|++++|...++.....
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 222344677888899999999999999988654 22222 6777888999999999999999887653
Q ss_pred ---CCCCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHHhhHHHHHHH
Q 023915 197 ---GYRID-QGIFHIAIARYIAEREKKELLLKLLEWMTGQ----GYVVD-SSTRNLILKNSHLFGRQLIADI 259 (275)
Q Consensus 197 ---g~~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~----~~~p~-~~t~~~li~~~~~~g~~~~~~~ 259 (275)
+-.+. ..++..+...|. ..|++++|...+++.... +-.+. ..++..+-..+...|+...+..
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111 346777777775 779999999999887542 21111 5567777778888884444433
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=4.7e-10 Score=82.19 Aligned_cols=163 Identities=11% Similarity=-0.030 Sum_probs=107.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
+...|..+-..+.+.|++++|++.|++..+. .|+ ..++..+...+.+.|+++.|...+....... +-+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 5567777777788888888888888777663 343 4566677777777788888877777776553 23445666666
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhH
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINL 185 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~ 185 (275)
..+...++++.+...+......... +...+..+-..+...|++++|++.|++... ...+..+..+...|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 6777777777777777766543222 233555666666677777777777766544 2233356666666777777777
Q ss_pred HHHHHHHHHH
Q 023915 186 VNDVMKAIHA 195 (275)
Q Consensus 186 a~~~~~~m~~ 195 (275)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766655
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=5.2e-11 Score=100.78 Aligned_cols=186 Identities=12% Similarity=-0.001 Sum_probs=157.9
Q ss_pred hhhhhcCcH-HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc---
Q 023915 3 SAFCRGGCF-EEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE--- 78 (275)
Q Consensus 3 ~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--- 78 (275)
..+...|++ ++|.+.|+...+.... +...|..+-.+|.+.|++++|.+.|++..+. .|+...+..+...+...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCS
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccC
Confidence 356778999 9999999999987544 6789999999999999999999999999884 58888899999999999
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcc--------CCHHHHHHHHHHHHhcccc--ccHHhHHHHH
Q 023915 79 ------KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKM--------RAHSEALSVYNMLRYSKRS--MCKALHEKIL 142 (275)
Q Consensus 79 ------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--~~~~~~~~li 142 (275)
|++++|...|++..+.. +-+...|..+..+|... |++++|...|+........ .+...|..+-
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 99999999999998864 34577899999999988 9999999999998875431 4566888999
Q ss_pred HHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 023915 143 HILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
..|...|++++|.+.|++... ...+..+..+...+...|++++|.+.+..
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999765 33444678888888899999888876543
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=1.2e-09 Score=80.07 Aligned_cols=169 Identities=7% Similarity=-0.069 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 143 (275)
+...|..+-..|.+.|++++|+..|++..+.. +-+..++..+...|.+.|++++|...+.......... ...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 56679999999999999999999999998764 3456789999999999999999999999887654443 446677778
Q ss_pred HHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHH
Q 023915 144 ILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKEL 221 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~ 221 (275)
.+...++++.|...+.+... ...+..+..+...|...|++++|.+.|+...+.. +-+..+|..+-..|. ..|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~-~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYE-GKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHH-HCCCHHH
Confidence 88899999999999998765 3344577888999999999999999999988864 235567888888876 7799999
Q ss_pred HHHHHHHHhhCCCCCCh
Q 023915 222 LLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 222 a~~l~~~m~~~~~~p~~ 238 (275)
|.+.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999998763 4543
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1e-09 Score=87.52 Aligned_cols=181 Identities=10% Similarity=0.019 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHh-cCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh--hHHHHHHHHHccCCHHHHHHH
Q 023915 11 FEEAKQLAGDFEA-KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN--TFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 11 ~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~~ 87 (275)
.++|..+|+...+ ..+. +...|..+...+.+.|++++|.++|++..+ +.|+.. .|..+...+.+.|+++.|..+
T Consensus 80 ~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 3999999999987 3332 567899999999999999999999999988 557543 799999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHH-hccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHL-GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES-- 164 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 164 (275)
|++..+.. +++...|....... ...|+.++|..+|+......+ -+...|..++..+...|++++|..+|++....
T Consensus 157 ~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 99998764 33444554433332 236999999999998876533 25668889999999999999999999998774
Q ss_pred CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 165 IS----HPAIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 165 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
.+ ...+..++..+.+.|+.+.|..+++...+.
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12 236788889999999999999999998875
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=8.5e-10 Score=90.60 Aligned_cols=224 Identities=11% Similarity=-0.040 Sum_probs=151.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC--C---CC-ChhhHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELA--I---SP-DYNTFHILI 72 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~---~p-~~~t~~~li 72 (275)
.+...|++++|...|+..... +-.+ ...+|..+-..+...|++++|++.+++..+.- . .| ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 355678888898888888753 1122 34578888888888889888888888776521 1 11 234677788
Q ss_pred HHHHccCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHh-----ccccccHHhHHHHH
Q 023915 73 KYFCKEKMYILAYRTMVDMHRK----GHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALHEKIL 142 (275)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li 142 (275)
..|...|++++|...+++..+. +-.+. ..++..+-..|...|++++|...+++... ...+....++..+-
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8888889999988888887643 11111 23677788888888899888888887765 22233455677788
Q ss_pred HHHHhccchHHHHHHHHHhhc----CCChh---HHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 023915 143 HILISGKLLKDAYVVVKDNSE----SISHP---AIKKFASAFVRLGN---INLVNDVMKAIHATGYRIDQG-IFHIAIAR 211 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~-~y~~li~~ 211 (275)
..+...|++++|...+++... .+++. .+..+-..|...|+ +++|..+++.. +..|+.. .+..+-..
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 888888888888888887544 12222 34556677777777 55666665543 3344433 45555555
Q ss_pred HHHhchhHHHHHHHHHHHhh
Q 023915 212 YIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 212 ~~~~~~~~~~a~~l~~~m~~ 231 (275)
|. ..|++++|.+.+++..+
T Consensus 349 y~-~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YH-ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HH-HTTCHHHHHHHHHHHHH
T ss_pred HH-HCCCHHHHHHHHHHHHH
Confidence 54 67888888888887643
No 58
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.30 E-value=3.7e-08 Score=83.57 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=91.4
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cC
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~ 79 (275)
.++.++|.+.|+...+.| +...+..|-..|.. .+++++|++.|++..+.| +...+..|-..|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 344444444444444432 33333334444443 344444444444444432 22233333333433 44
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh----ccch
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLL 151 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~ 151 (275)
+.++|...|++..+.| +...+..+-..|.+ .++.++|.+.|+.....+. ...+..+-..|.. .++.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCH
Confidence 4555555555444432 23344444444444 4555555555554443321 1223333333332 4455
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc-----hhHHHH
Q 023915 152 KDAYVVVKDNSESISHPAIKKFASAFVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER-----EKKELL 222 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~-----~~~~~a 222 (275)
++|..+|++..+.+.+..+..+-..|.. .++.++|...|+...+.| +...+..+-..|. .. ++.++|
T Consensus 240 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~-~~~~g~~~~~~~A 315 (490)
T 2xm6_A 240 TQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD-KGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH-HCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-cCCCCCcCCHHHH
Confidence 5555555554444444444444444444 455555555555544432 2223333333332 22 455555
Q ss_pred HHHHHHHhhC
Q 023915 223 LKLLEWMTGQ 232 (275)
Q Consensus 223 ~~l~~~m~~~ 232 (275)
..++++..+.
T Consensus 316 ~~~~~~a~~~ 325 (490)
T 2xm6_A 316 ISWYTKSAEQ 325 (490)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 5555555444
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=9.5e-10 Score=80.07 Aligned_cols=163 Identities=8% Similarity=-0.015 Sum_probs=111.5
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|...+++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456777778888888888888888876532 2355677788888888888888888888887653 3456677777788
Q ss_pred HhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--CChhHHHHHHHHHHhcCChhHHH
Q 023915 110 LGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES--ISHPAIKKFASAFVRLGNINLVN 187 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~ 187 (275)
+...|++++|.+.++....... .+...+..+...+...|++++|...+++.... ..+..+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887765432 23345556666666677777777776665442 22335556666666666666666
Q ss_pred HHHHHHHH
Q 023915 188 DVMKAIHA 195 (275)
Q Consensus 188 ~~~~~m~~ 195 (275)
..++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 60
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=2e-10 Score=89.56 Aligned_cols=225 Identities=12% Similarity=-0.035 Sum_probs=152.9
Q ss_pred hhcCcHHHHHHHHHHHHhc-------CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc------CCCC-ChhhHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAK-------YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AISP-DYNTFHIL 71 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~l 71 (275)
...|++++|...|++..+. .......++..+...+...|++++|++.|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22335678999999999999999999999998764 2223 35678899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc------c-ccccHHh
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRK------GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS------K-RSMCKAL 137 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~ 137 (275)
...+...|+++.|...+++..+. .-.| ...++..+...|...|++++|...+++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1123 3567888999999999999999999988754 1 2223557
Q ss_pred HHHHHHHHHhccchHHHHHHHHHhhcC----------C-ChhHHHHHHHHHHhcCChhHHHHHHHHH---HHcC-CCC-C
Q 023915 138 HEKILHILISGKLLKDAYVVVKDNSES----------I-SHPAIKKFASAFVRLGNINLVNDVMKAI---HATG-YRI-D 201 (275)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~g-~~p-~ 201 (275)
+..+-..+...|++++|...+++.... + ....+..+...+...+....+....... ...+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999999886541 1 1113333333444333333322221111 1111 112 2
Q ss_pred hhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 202 QGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 202 ~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
..++..+...|. ..|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYR-RQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 346777777775 77999999999998765
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=5.2e-10 Score=87.19 Aligned_cols=222 Identities=12% Similarity=0.017 Sum_probs=148.7
Q ss_pred HccCCHHHHHHHHHHHhhc-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHhHHHH
Q 023915 41 CRTGDMESVMHVMRKLDEL-------AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK------GHQP-EEELCSSL 106 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l 106 (275)
...|++++|+++|++..+. .-+....++..+...+...|+++.|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777666542 22334567889999999999999999999998865 3233 34588899
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcc-------ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC------CChh----H
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYSK-------RSMCKALHEKILHILISGKLLKDAYVVVKDNSES------ISHP----A 169 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~----~ 169 (275)
...|...|++++|...++...... .+.....+..+-..+...|++++|...+++.... +..+ .
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999876541 2334567888899999999999999999986653 2222 5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHHhchh------HHHHHHHHHHHhhCCCCC
Q 023915 170 IKKFASAFVRLGNINLVNDVMKAIHAT-------GYRIDQGIFHIAIARYIAEREK------KELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 170 ~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~y~~li~~~~~~~~~------~~~a~~l~~~m~~~~~~p 236 (275)
+..+...|...|++++|...++...+. ...|....+...+..+....+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 677889999999999999999987763 2233333333333332212121 2222222222211 1223
Q ss_pred ChhhHHHHHHHHHHhhHHHHHHHHhcc
Q 023915 237 DSSTRNLILKNSHLFGRQLIADILSKQ 263 (275)
Q Consensus 237 ~~~t~~~li~~~~~~g~~~~~~~~~~~ 263 (275)
...++..+...|...|+...|....+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456788889999999977666665544
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.28 E-value=2.3e-09 Score=87.95 Aligned_cols=214 Identities=9% Similarity=-0.009 Sum_probs=170.4
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM-YILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
...|+.+-..+.+.|++++|++.|++..+ +.|+ ...|+.+...+.+.|+ +++|+..|++..+.. +-+...|..+-
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45788888899999999999999999987 4465 5678889999999996 999999999999864 34667999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHh-cCChh
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVR-LGNIN 184 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~-~~~~~ 184 (275)
.++.+.|++++|+..|+........ +...|..+-.++...|++++|+..+++... ..+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998865433 345788888899999999999999999876 3344578888888888 66657
Q ss_pred HH-----HHHHHHHHHcCCCCC-hhhHHHHHHHHHHhch--hHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 185 LV-----NDVMKAIHATGYRID-QGIFHIAIARYIAERE--KKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 185 ~a-----~~~~~~m~~~g~~p~-~~~y~~li~~~~~~~~--~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
+| ...++..... .|+ ...|+.+-..+. ..| ++++|.+.+.++ ..-+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~-~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH-ccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHh
Confidence 77 4777777664 354 456776666664 555 688899999888 333445677888888888764
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=5.1e-10 Score=81.54 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=133.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+...|++++|.+.|+.+..... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 356788999999999999876543 367889999999999999999999999988752 235677888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
.|...+++..+.. +.+...+..+...+.+.|++++|...++....... .+...+..+...+...|++++|...+++..
T Consensus 94 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 94 LAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998763 45677888999999999999999999999876543 345678889999999999999999999865
Q ss_pred c
Q 023915 163 E 163 (275)
Q Consensus 163 ~ 163 (275)
.
T Consensus 172 ~ 172 (186)
T 3as5_A 172 E 172 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.27 E-value=4.7e-08 Score=82.99 Aligned_cols=225 Identities=8% Similarity=-0.126 Sum_probs=176.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cC
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~ 79 (275)
.+++++|...|+...+.| +...+..|-..|.. .+++++|.+.|++..+.| +...+..|-..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999988764 56778888888888 899999999999988865 45566677777877 78
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh----ccch
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLL 151 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~ 151 (275)
++++|...|++..+.| +...+..+-..|.. .++.++|.+.|+.....+ +...+..+-..|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999998876 45667777777776 789999999999887664 34566677777777 7899
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHh----chhHHHHH
Q 023915 152 KDAYVVVKDNSESISHPAIKKFASAFVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAE----REKKELLL 223 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~----~~~~~~a~ 223 (275)
++|...|++..+.+++..+..+...|.. .+++++|...|+...+.| +...+..+-..|. . .++.++|.
T Consensus 204 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~-~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 204 AISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE-QGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH-HTTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-CCCCCCCCHHHHH
Confidence 9999999998888888888888888886 789999999999988764 3455555555554 4 57889999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHh
Q 023915 224 KLLEWMTGQGYVVDSSTRNLILKNSHLF 251 (275)
Q Consensus 224 ~l~~~m~~~~~~p~~~t~~~li~~~~~~ 251 (275)
++|++..+.| +...+..+-..+...
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 9999988765 333444444444443
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=1.5e-10 Score=95.81 Aligned_cols=228 Identities=12% Similarity=-0.014 Sum_probs=171.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhc----CC-CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAK----YD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILI 72 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li 72 (275)
..|...|++++|...|++.... +- .....++..+-..|...|++++|.+.|++..+. +-.| ...++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 94 NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3567889999999999987653 11 224567889999999999999999999987653 1122 244788888
Q ss_pred HHHHccCC-----------------HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 73 KYFCKEKM-----------------YILAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 73 ~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
..|...|+ ++.|...+++..+. +-.+ ...++..+...|...|++++|...+++.....
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999 99999999887542 2222 23477888899999999999999999876532
Q ss_pred c-----cccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 023915 131 R-----SMCKALHEKILHILISGKLLKDAYVVVKDNSE----SIS----HPAIKKFASAFVRLGNINLVNDVMKAIHAT- 196 (275)
Q Consensus 131 ~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 196 (275)
. ......+..+...+...|++++|...+++... ... ...+..+...|...|++++|...++.....
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 11233677888899999999999999988654 222 235677889999999999999999987653
Q ss_pred ---CCCC-ChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 197 ---GYRI-DQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 197 ---g~~p-~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
+-.+ ...++..+...|. ..|++++|.+.+++..+
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHS-AIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence 1111 1236777777775 77999999999998765
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=7e-09 Score=88.94 Aligned_cols=214 Identities=7% Similarity=-0.006 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHc-------cCCHH-------HHHHHHHHHhhcCCCC-ChhhHHHHHHHHH
Q 023915 12 EEAKQLAGDFEAKYDKYDVVLLNSMLCAYCR-------TGDME-------SVMHVMRKLDELAISP-DYNTFHILIKYFC 76 (275)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p-~~~t~~~li~~~~ 76 (275)
++|..+|++.....+. +...|......+.+ .|+++ +|.++|++..+. +.| +...|..++..+.
T Consensus 255 ~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 3667788887775332 67788888887775 78987 899999998763 235 4678889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHH-HHHHhccchHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEE--ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL-HILISGKLLKD 153 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~ 153 (275)
+.|+++.|..+|++..+. .|+. ..|...+..+.+.|+.++|.++|+......... ...|.... -.+...|+.++
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~-~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC-THHHHHHHHHHHHHTCCHHH
T ss_pred hcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHHcCChhH
Confidence 999999999999999984 5542 478889999999999999999999988654322 22222221 22346899999
Q ss_pred HHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHHhchhHHHHHHHHHH
Q 023915 154 AYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATG-YRID--QGIFHIAIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 154 a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~y~~li~~~~~~~~~~~~a~~l~~~ 228 (275)
|..+|+.... ..++..+..++..+.+.|+.++|..+|+.....+ ..|+ ...|...+.-. ...|+.+.+..++++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e-~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH-HHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 9999998665 3345578889999999999999999999988863 2332 23666666543 467889999999988
Q ss_pred Hhh
Q 023915 229 MTG 231 (275)
Q Consensus 229 m~~ 231 (275)
+.+
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=6.1e-10 Score=91.62 Aligned_cols=249 Identities=9% Similarity=-0.021 Sum_probs=181.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCC----hhhHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPD----YNTFHILI 72 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~li 72 (275)
..+...|++++|...|+..... +-.| ...++..+...+...|++++|...+++..+.. -.++ ..++..+.
T Consensus 55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 4577889999999999986542 2222 25578889999999999999999998876531 0112 44788888
Q ss_pred HHHHccCC--------------------HHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 73 KYFCKEKM--------------------YILAYRTMVDMHRK----GHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 73 ~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
..+...|+ ++.|...+++..+. +..|. ..++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 89999999 99999999887642 22222 3477888899999999999999999876
Q ss_pred hcc-----ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCCh----hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 128 YSK-----RSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISH----PAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 128 ~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
... .......+..+-..+...|++++|...+++... ...+ ..+..+...|...|++++|...++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 431 112233678888899999999999999988654 2222 256778899999999999999998876
Q ss_pred Hc----CCCCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHHhh
Q 023915 195 AT----GYRID-QGIFHIAIARYIAEREKKELLLKLLEWMTGQ----GYVV-DSSTRNLILKNSHLFG 252 (275)
Q Consensus 195 ~~----g~~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~----~~~p-~~~t~~~li~~~~~~g 252 (275)
+. +-.+. ..++..+-..|. ..|++++|.+.+++..+. +-.+ ...++..+-..+...|
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 53 21111 346667777765 679999999999886542 2222 2456666666776666
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=4.1e-09 Score=86.40 Aligned_cols=222 Identities=8% Similarity=-0.027 Sum_probs=149.9
Q ss_pred hhhcCcHHHHHHHHHHHHhcCC-CC----cHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----C-CCC-ChhhHHHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYD-KY----DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----A-ISP-DYNTFHILIK 73 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p-~~~t~~~li~ 73 (275)
+...|++++|...|+....... .+ ...++..+-..|...|+++.|+..+++..+. + ..+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4577889999999888875311 11 2456788888888889999988888877642 1 111 2456778888
Q ss_pred HHHccCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHh-----ccccccHHhHHHHHH
Q 023915 74 YFCKEKMYILAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALHEKILH 143 (275)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~ 143 (275)
.|...|+++.|...|++..+. +-.+ ...++..+-..|...|++++|...+++... ..... ..++..+-.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHH
Confidence 888889999998888887643 2111 124677788888888999999888887765 33333 567777888
Q ss_pred HHHhccchHHHHHHHHHhhcC----CChh---HHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCChh-hHHHHHHHH
Q 023915 144 ILISGKLLKDAYVVVKDNSES----ISHP---AIKKFASAFVRLGN---INLVNDVMKAIHATGYRIDQG-IFHIAIARY 212 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~-~y~~li~~~ 212 (275)
.+.+.|++++|...+++.... +++. .+..+-..|...++ +.+|...++. .+..|+.. .+..+-..|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 888889999998888876541 1211 34455556666677 5566655544 33344433 444555555
Q ss_pred HHhchhHHHHHHHHHHHhh
Q 023915 213 IAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 213 ~~~~~~~~~a~~l~~~m~~ 231 (275)
. ..|++++|.+.|++..+
T Consensus 347 ~-~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 E-SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp H-HTTCHHHHHHHHHHHHH
T ss_pred H-HCCCHHHHHHHHHHHHH
Confidence 4 67888888888887643
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=9.2e-10 Score=87.86 Aligned_cols=229 Identities=9% Similarity=-0.036 Sum_probs=170.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCC----hhhHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD----YNTFHILI 72 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li 72 (275)
..+...|++++|.+.++..... +..| ...++..+...+...|++++|.+.+++..+..- .++ ..++..+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 130 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4577889999999999886543 2222 356788999999999999999999988765311 112 34788888
Q ss_pred HHHHccCC--------------------HHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 73 KYFCKEKM--------------------YILAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 73 ~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
..+...|+ ++.|...+++.... +..| ...++..+...+...|++++|...++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999 99999999887542 2222 23477888889999999999999999876
Q ss_pred hcc-----ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCCh----hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 128 YSK-----RSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISH----PAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 128 ~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
... .......+..+...+...|++++|...+++... ...+ ..+..+...|...|++++|...++...
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 431 122233677888899999999999999988654 2222 256778889999999999999998876
Q ss_pred Hc----CCCCC-hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 195 AT----GYRID-QGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 195 ~~----g~~p~-~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
+. +-.+. ..++..+...|. ..|++++|...+++....
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHH
Confidence 53 21111 336667777775 779999999999988653
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=2e-09 Score=95.20 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=137.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
+...|+.|-..+.+.|++++|++.|++..+ +.|+ ..+|..+-..|.+.|++++|+..|++..+.. +-+..+|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456899999999999999999999999887 4465 5678899999999999999999999998763 23467899999
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhH
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINL 185 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~ 185 (275)
.+|.+.|++++|.+.|++..+.... ....|..+-..+...|++++|++.|++..+ ...+..+..+...|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999988765433 355788899999999999999999998765 3345588899999999999999
Q ss_pred HHHHHHHHHH
Q 023915 186 VNDVMKAIHA 195 (275)
Q Consensus 186 a~~~~~~m~~ 195 (275)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 71
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.19 E-value=2.2e-08 Score=92.23 Aligned_cols=217 Identities=16% Similarity=0.145 Sum_probs=126.8
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
..+++++|.++.+... +..+|..+-.++...|++++|++.|.+. -|...|.-++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 5566777777766442 4566777777777777777777777443 445556667777777777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS 166 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (275)
.+...++.. ++....+.+..+|++.++++....+.+ .++...|..+-..|-..|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 776655543 332233346666666666664332221 112233444555555666666666666653
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHc------------------------CCCCChhhHHHHHHHHHHhchhHHHH
Q 023915 167 HPAIKKFASAFVRLGNINLVNDVMKAIHAT------------------------GYRIDQGIFHIAIARYIAEREKKELL 222 (275)
Q Consensus 167 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------g~~p~~~~y~~li~~~~~~~~~~~~a 222 (275)
+.|..+...|++.|+++.|.+.++.-... ++..+...+..++..|- ..|.+++|
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe-~~G~feEA 1299 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ-DRGYFEEL 1299 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH-HcCCHHHH
Confidence 35556666666666666665555432110 12234556667777664 77889999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 223 LKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 223 ~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
..+++.-.... +-....|.-+-..+.+..
T Consensus 1300 I~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1300 ITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 99887655433 233456666666666666
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=4.5e-08 Score=79.86 Aligned_cols=251 Identities=12% Similarity=-0.006 Sum_probs=171.4
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCC----hhhHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD----YNTFHILIKY 74 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~ 74 (275)
.+...|++++|...+++........+. .+++.+-..+...|++++|.+.+++.....- .++ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 355789999999999998775433232 2567777888899999999999988765210 111 2335677788
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCC--CC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhcc----ccccHHhHHHHHH
Q 023915 75 FCKEKMYILAYRTMVDMHRK----GHQ--PE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSK----RSMCKALHEKILH 143 (275)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~----g~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~ 143 (275)
+...|+++.|...+++..+. +.. |. ...+..+-..+...|++++|...+++..... .......+..+-.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 89999999999999988753 222 32 3456667888899999999999999876432 2123346777888
Q ss_pred HHHhccchHHHHHHHHHhhc----CCChhHHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHH
Q 023915 144 ILISGKLLKDAYVVVKDNSE----SISHPAIK-----KFASAFVRLGNINLVNDVMKAIHATGYRID---QGIFHIAIAR 211 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~y~~li~~ 211 (275)
.+...|++++|...+++... ...+..+. .....+...|++++|...++........+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88999999999999988653 12222222 233457789999999999988765332111 2245566666
Q ss_pred HHHhchhHHHHHHHHHHHhh----CCCCCCh-hhHHHHHHHHHHhhHHH
Q 023915 212 YIAEREKKELLLKLLEWMTG----QGYVVDS-STRNLILKNSHLFGRQL 255 (275)
Q Consensus 212 ~~~~~~~~~~a~~l~~~m~~----~~~~p~~-~t~~~li~~~~~~g~~~ 255 (275)
+. ..|++++|...+++... .|..++. ..+..+-.++...|+..
T Consensus 263 ~~-~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 263 QI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HH-HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 65 66999999999987743 2333333 25555666677777333
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=2.9e-08 Score=75.18 Aligned_cols=204 Identities=11% Similarity=-0.043 Sum_probs=141.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
|+..+...-..+...|++++|++.|++..+..-.++...+..+...+.+.|++++|...+++..+.. +-+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888888888899999999999988875433667777778888889999999999999888653 224567888888
Q ss_pred HHhccCCHHHHHHHHHHHHhcccccc-H-----HhHHHHHHHHHhccchHHHHHHHHHhhcCCCh----hHHHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMC-K-----ALHEKILHILISGKLLKDAYVVVKDNSESISH----PAIKKFASAFV 178 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~li~~~~ 178 (275)
.|.+.|++++|...++......+... . ..|..+-..+...|++++|...+++.....+. ..+..+...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 88999999999999988775433211 1 34666777778889999999999987764332 34555555554
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHH
Q 023915 179 RLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLI 244 (275)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~l 244 (275)
..| ..+++.+...+ ..+...|...... ..+.+++|...+++..+. .|+......+
T Consensus 165 ~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 165 NNG-----ADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp HHH-----HHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHH-----HHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 443 33445554443 2344555555433 347788899999988764 4654443333
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=3.4e-09 Score=72.74 Aligned_cols=128 Identities=14% Similarity=0.032 Sum_probs=68.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (275)
.|..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|+++.|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34455555555566666666665555432 1234445555555555666666666666655443 233445555555566
Q ss_pred ccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhh
Q 023915 112 KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
+.|++++|.+.++.+...... +...+..+...+...|++++|...++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 666666666666655443221 23345555555666666666666665543
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=3.8e-09 Score=93.41 Aligned_cols=155 Identities=13% Similarity=0.016 Sum_probs=133.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~ 81 (275)
..|.+.|++++|++.|++..+.... +...|+.+-.+|.+.|++++|++.|++..+ +.|+ ...|..+...+.+.|++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Confidence 4577899999999999999987544 678999999999999999999999999987 4465 56899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHh
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
++|++.|++..+.. +-+..+|..+-.+|.+.|++++|++.|++..+.... ....+..+...+...|++++|.+.+++.
T Consensus 94 ~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 94 QGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 99999999998763 334679999999999999999999999988765433 3457888999999999999999888875
Q ss_pred h
Q 023915 162 S 162 (275)
Q Consensus 162 ~ 162 (275)
.
T Consensus 172 l 172 (723)
T 4gyw_A 172 V 172 (723)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.13 E-value=4e-08 Score=90.57 Aligned_cols=214 Identities=9% Similarity=0.075 Sum_probs=162.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+...|.+++|..+|+... -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 5677899999999999863 13333455544 6688999999988652 35678899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
|...|.+. -|...|..++.+|.+.|++++|.+.+....+....+ ...+.+..+|++.+++++....+ .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH----h
Confidence 99999663 566788999999999999999999999876654332 23445889999999988644443 3
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHH
Q 023915 164 SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNL 243 (275)
Q Consensus 164 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~ 243 (275)
.+..+.+..+-..|...|++++|...|... ..|..+...|+ +.|++++|.+.+++.. +..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv-kLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV-HLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH-HhCCHHHHHHHHHHhC------CHHHHHH
Confidence 455667778999999999999999999874 48889999987 7789999999988662 3455555
Q ss_pred HHHHHHHhhHHHHHHH
Q 023915 244 ILKNSHLFGRQLIADI 259 (275)
Q Consensus 244 li~~~~~~g~~~~~~~ 259 (275)
+-.+|...|...+|..
T Consensus 1256 v~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHHhhhhHHHHHHH
Confidence 5555555554444433
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.12 E-value=7.3e-09 Score=85.01 Aligned_cols=220 Identities=13% Similarity=-0.009 Sum_probs=157.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC-----CHHhHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGH-QP-----EEELCS 104 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~-----~~~~~~ 104 (275)
.-..+...|++++|++.|++..+. +-.| ...++..+...|...|+++.|...+++..+.-- .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999998763 2122 345788899999999999999999999875311 11 134788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhc----c-ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCC-h---hHHH
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYS----K-RSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SIS-H---PAIK 171 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~---~~~~ 171 (275)
.+-..|...|++++|...|+..... + ......++..+-..|...|++++|...+++... ... + ..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999987643 1 222234778888999999999999999998655 122 2 2677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCCCChhhHHHHHHHHHHhchh---HHHHHHHHHHHhhCCCCCC-hhhHHH
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHAT----GYRIDQGIFHIAIARYIAEREK---KELLLKLLEWMTGQGYVVD-SSTRNL 243 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~y~~li~~~~~~~~~---~~~a~~l~~~m~~~~~~p~-~~t~~~ 243 (275)
.+...|...|++++|...++...+. +-+.....+..+-..|. ..|+ +++|..++++. +..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 8889999999999999999886653 11111223455555543 5666 66777777665 33443 456777
Q ss_pred HHHHHHHhhHHHHHHH
Q 023915 244 ILKNSHLFGRQLIADI 259 (275)
Q Consensus 244 li~~~~~~g~~~~~~~ 259 (275)
+-..|...|+...|..
T Consensus 345 la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 345 VAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 7888888885444443
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=5.2e-08 Score=73.78 Aligned_cols=148 Identities=9% Similarity=-0.002 Sum_probs=119.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHH
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 142 (275)
.|...+......+.+.|++++|...|++..+..-.++...+..+..++.+.|++++|.+.|+......+. ....+..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3557788888899999999999999999998764477788888999999999999999999998865443 455788899
Q ss_pred HHHHhccchHHHHHHHHHhhc-CCC-h-------hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHH
Q 023915 143 HILISGKLLKDAYVVVKDNSE-SIS-H-------PAIKKFASAFVRLGNINLVNDVMKAIHATGYRID---QGIFHIAIA 210 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~-~~~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~y~~li~ 210 (275)
..+...|++++|...+++... .+. + ..|..+-..+...|++++|...|+...+. .|+ ...|..+-.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999776 232 3 23666778888999999999999998774 465 345555555
Q ss_pred HHH
Q 023915 211 RYI 213 (275)
Q Consensus 211 ~~~ 213 (275)
.|.
T Consensus 162 ~~~ 164 (228)
T 4i17_A 162 LFY 164 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=1.6e-08 Score=69.29 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=60.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+...|++++|.++|+.+.+.+.. +...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...|+++.
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDE 87 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHH
Confidence 344455555555555555544322 34445555555555555555555555554432 1223344455555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
|...++++.+.. +.+..++..+...+.+.|++++|...++++.
T Consensus 88 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 88 AIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555432 2234445555555555555555555555543
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.4e-08 Score=80.32 Aligned_cols=205 Identities=12% Similarity=0.007 Sum_probs=147.9
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCC-hhhHHHHHHHHHccCCHHHH
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a 84 (275)
++++|...|+.. ...|...|++++|.+.|.+..+. |-.++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887776 44677889999999999887653 32232 56899999999999999999
Q ss_pred HHHHHHHHHc----CCCCC-HHhHHHHHHHHhcc-CCHHHHHHHHHHHHhccccc-----cHHhHHHHHHHHHhccchHH
Q 023915 85 YRTMVDMHRK----GHQPE-EELCSSLIFHLGKM-RAHSEALSVYNMLRYSKRSM-----CKALHEKILHILISGKLLKD 153 (275)
Q Consensus 85 ~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~ 153 (275)
+..+++..+. |-.+. ..++..+-..|... |++++|...|++........ ...++..+-..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988753 21111 35788899999996 99999999999876532211 13468888999999999999
Q ss_pred HHHHHHHhhcCC-Chh--------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh------hHHHHHHHHH-Hhch
Q 023915 154 AYVVVKDNSESI-SHP--------AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG------IFHIAIARYI-AERE 217 (275)
Q Consensus 154 a~~~~~~~~~~~-~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~y~~li~~~~-~~~~ 217 (275)
|+..|++..... ..+ .+..+...+...|++++|...|+...+. .|+.. .+..+...+- ...+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999876521 111 3566778889999999999999887653 34322 3445565553 1346
Q ss_pred hHHHHHHHHHHHhh
Q 023915 218 KKELLLKLLEWMTG 231 (275)
Q Consensus 218 ~~~~a~~l~~~m~~ 231 (275)
++++|...|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78888888877644
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=2e-08 Score=79.32 Aligned_cols=197 Identities=11% Similarity=-0.020 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHcc--C-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 023915 13 EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRT--G-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMV 89 (275)
Q Consensus 13 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 89 (275)
+|.+++.+..+. .+++...| .+. +. + ++++|.+.|++. ...|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466777776664 23222223 222 32 2 488888888776 345778899999999998
Q ss_pred HHHHc----CCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccc----c-ccHHhHHHHHHHHHhc-cchHHHHHHH
Q 023915 90 DMHRK----GHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKR----S-MCKALHEKILHILISG-KLLKDAYVVV 158 (275)
Q Consensus 90 ~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~-~~~~~~~~li~~~~~~-~~~~~a~~~~ 158 (275)
+..+. |-.++ ..+|+.+-.+|.+.|++++|...++....... . ....+++.+-..|... |++++|+..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 87653 32222 45888899999999999999998887654321 1 1234677888888886 9999999999
Q ss_pred HHhhc----CCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh------hHHHHHHHHHHhchhHHHHHH
Q 023915 159 KDNSE----SISH----PAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG------IFHIAIARYIAEREKKELLLK 224 (275)
Q Consensus 159 ~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~y~~li~~~~~~~~~~~~a~~ 224 (275)
++... ...+ ..+..+...|...|++++|...|+...+........ .|..+...+. ..|++++|..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~ 220 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL-AATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 88654 2222 256778889999999999999999888753222211 4555555665 6688999999
Q ss_pred HHHHHhh
Q 023915 225 LLEWMTG 231 (275)
Q Consensus 225 l~~~m~~ 231 (275)
.|++...
T Consensus 221 ~~~~al~ 227 (292)
T 1qqe_A 221 TLQEGQS 227 (292)
T ss_dssp HHHGGGC
T ss_pred HHHHHHh
Confidence 9998765
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=6.4e-08 Score=78.96 Aligned_cols=227 Identities=11% Similarity=-0.062 Sum_probs=159.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCC-CCc----HHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCC--CC-hhhHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYD-KYD----VVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AIS--PD-YNTFHIL 71 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~l 71 (275)
.+...|++++|.+.+++...... .++ ..+++.+-..+...|++++|.+.+++..+. +.. |. ...+..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 46678999999999998775311 111 234677888899999999999999887653 222 32 3456678
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC----CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc--cHHhHH----HH
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGHQP----EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM--CKALHE----KI 141 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~----~l 141 (275)
...+...|+++.|...+++..+..-.. ...++..+...+...|++++|...+++.......+ ...... ..
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 888999999999999999987643221 23467778888999999999999999876432111 111111 23
Q ss_pred HHHHHhccchHHHHHHHHHhhcCCCh------hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCChh-hHHHHHH
Q 023915 142 LHILISGKLLKDAYVVVKDNSESISH------PAIKKFASAFVRLGNINLVNDVMKAIHAT----GYRIDQG-IFHIAIA 210 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~-~y~~li~ 210 (275)
...+...|++++|...+++....... ..+..+...+...|++++|...++..... |..++.. .+..+-.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 34477899999999999987653221 13566778899999999999999886553 3222222 4454555
Q ss_pred HHHHhchhHHHHHHHHHHHhh
Q 023915 211 RYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 211 ~~~~~~~~~~~a~~l~~~m~~ 231 (275)
.+. ..|+.++|...+++...
T Consensus 302 ~~~-~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 302 LYW-QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHH-HHTCHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHHH
Confidence 554 67889999998887654
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.04 E-value=7.5e-08 Score=82.55 Aligned_cols=185 Identities=10% Similarity=0.016 Sum_probs=145.2
Q ss_pred cCcHH-------HHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHHcc
Q 023915 8 GGCFE-------EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCKE 78 (275)
Q Consensus 8 ~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~ 78 (275)
.|+++ +|..+|+...+.-.+-+...|..+...+.+.|++++|.++|+...+ +.|+. ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHh
Confidence 68876 8999999988621223678999999999999999999999999988 45653 4788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHH-HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIF-HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVV 157 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (275)
|+++.|..+|++..+.. +.+...|..... .+...|+.++|..+|+......+ -+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 99999999999998652 222333332222 23468999999999998776532 3456888999999999999999999
Q ss_pred HHHhhcC-C-Chh----HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 158 VKDNSES-I-SHP----AIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 158 ~~~~~~~-~-~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
|++.... + ++. .|...+......|+.+.+..+++.+.+.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9997763 2 222 6777888888999999999999888764
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=9.1e-08 Score=75.31 Aligned_cols=184 Identities=8% Similarity=-0.037 Sum_probs=120.0
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 49 VMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQ-PEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 49 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....|-. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566665544 455566667778888889999999999887665532 345577788888999999999999998887
Q ss_pred hccc---cccHHhHHHHHHHH----HhccchHHHHHHHHHhhcCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 023915 128 YSKR---SMCKALHEKILHIL----ISGKLLKDAYVVVKDNSESISH-PAIKKFASAFVRLGNINLVNDVMKAIHAT--- 196 (275)
Q Consensus 128 ~~~~---~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 196 (275)
.... ..+..+...+..++ ...++..+|+.+|+++...... .+...++.++...|++++|+..++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6533 11233344444442 2344888999999988765432 23445555888889999999998866543
Q ss_pred --CC---CC-ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCCh
Q 023915 197 --GY---RI-DQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 197 --g~---~p-~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~ 238 (275)
+- .| |..+...+|.... ..|+ ++.+++++++.. .|+.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHT--TCCC
T ss_pred ccccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHh--CCCC
Confidence 00 13 4455533433322 4455 688888888774 3553
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=3.7e-08 Score=77.54 Aligned_cols=180 Identities=8% Similarity=-0.007 Sum_probs=130.4
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 14 AKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PDYNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
|...|++....+ .++..++..+-.++...|++++|++++.+-...|-. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666666544 456666678889999999999999999987664421 255677888999999999999999999998
Q ss_pred HcCCCC-----CHHhHHHHHHHHh--ccC--CHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc
Q 023915 93 RKGHQP-----EEELCSSLIFHLG--KMR--AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 93 ~~g~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
+. .| +..+...+..++. ..| +...|..+|+++...... ......++.++...|++++|.+.++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 3566666776633 334 899999999998766433 11223344488899999999999987554
Q ss_pred ------------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 023915 164 ------------SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ 202 (275)
Q Consensus 164 ------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 202 (275)
..++.++..+|......|+ .|.+++.++++. .|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 2233355455555555676 889999999885 3654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=5.7e-08 Score=75.26 Aligned_cols=189 Identities=8% Similarity=0.022 Sum_probs=125.7
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC-HHh
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHRKGH-QPE-EEL 102 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~-~~~ 102 (275)
+...+-.+-..+.+.|++++|++.|++..+.. |+ ...+..+...+.+.|+++.|...|+...+..- .|. ..+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45566667777778888888888888887642 43 45666777788888888888888888876531 122 345
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHHHhccccc-cH-Hh--------------HHHHHHHHHhccchHHHHHHH
Q 023915 103 CSSLIFHLGK--------MRAHSEALSVYNMLRYSKRSM-CK-AL--------------HEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 103 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~-~~-~~--------------~~~li~~~~~~~~~~~a~~~~ 158 (275)
+..+..++.+ .|++++|...|+......+.. .. .. +..+-..|...|++++|...|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6667777777 788888888888776543221 11 11 145567888999999999999
Q ss_pred HHhhc-CCCh----hHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHHhchhH
Q 023915 159 KDNSE-SISH----PAIKKFASAFVRL----------GNINLVNDVMKAIHATGYRIDQG----IFHIAIARYIAEREKK 219 (275)
Q Consensus 159 ~~~~~-~~~~----~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~----~y~~li~~~~~~~~~~ 219 (275)
++... .+.. ..+..+..+|... |++++|...|+.+.+.. |+.. ....+-.. ....+++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~l~~~-~~~~~~~ 248 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLRTAEELYTRA-RQRLTEL 248 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHH-HHHHHHh
Confidence 98765 2322 2456666777766 88899999999988753 5542 33333333 2344555
Q ss_pred HHH
Q 023915 220 ELL 222 (275)
Q Consensus 220 ~~a 222 (275)
+.+
T Consensus 249 ~~~ 251 (261)
T 3qky_A 249 EGD 251 (261)
T ss_dssp HTC
T ss_pred hhh
Confidence 543
No 87
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=3.2e-07 Score=77.12 Aligned_cols=250 Identities=12% Similarity=-0.031 Sum_probs=159.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHH---HHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHc----cC
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCA---YCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCK----EK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~----~~ 79 (275)
.+++++|.+.|+...+..+. +...+..+..+ +...++.++|++.|++..+. .|+ ..++..+...+.. .+
T Consensus 151 ~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC----
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhh
Confidence 35799999999999886543 44455444444 44567788899999887763 354 3445555444443 46
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh------------
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS------------ 147 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~------------ 147 (275)
+.+.|.+++++..... +.+..++..+...|.+.|++++|...++......+.. ...+..+-..|..
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN-AYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7788999999988754 4456788899999999999999999999887654332 3344444333322
Q ss_pred -------ccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHHhc
Q 023915 148 -------GKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG--IFHIAIARYIAER 216 (275)
Q Consensus 148 -------~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~y~~li~~~~~~~ 216 (275)
.+..+.|...+++... ......+..+...|...|++++|...|+...+....|... .+..+...+....
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence 2335667777777554 3334478888999999999999999999988765333221 2222222222356
Q ss_pred hhHHHHHHHHHHHhhCC-----------------------CCCChhhHHHHHHHHHHhhHHHHHHHHhc
Q 023915 217 EKKELLLKLLEWMTGQG-----------------------YVVDSSTRNLILKNSHLFGRQLIADILSK 262 (275)
Q Consensus 217 ~~~~~a~~l~~~m~~~~-----------------------~~p~~~t~~~li~~~~~~g~~~~~~~~~~ 262 (275)
|++++|...|++..+.. -+.+..+|..+=..+...|+...|....+
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888988887765421 12345677777777777775555444443
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=2.8e-07 Score=69.14 Aligned_cols=155 Identities=14% Similarity=-0.023 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC----CHHHHHHHH
Q 023915 13 EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK----MYILAYRTM 88 (275)
Q Consensus 13 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~----~~~~a~~~~ 88 (275)
+|++.|+...+.| +...+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666665543 33444445555555 4 566666666
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhcccc-ccHHhHHHHHHHHHh----ccchHHHHHHHH
Q 023915 89 VDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRS-MCKALHEKILHILIS----GKLLKDAYVVVK 159 (275)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 159 (275)
++..+.| +..++..|-..|.. .++.++|.+.|+.....+.. .....+..+-..|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 33344445555544 45555555555555444331 012233334444444 444555555555
Q ss_pred HhhcC-CChhHHHHHHHHH
Q 023915 160 DNSES-ISHPAIKKFASAF 177 (275)
Q Consensus 160 ~~~~~-~~~~~~~~li~~~ 177 (275)
+.... +.+..+..+-..|
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 54433 3333333333333
No 89
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=4.9e-07 Score=67.79 Aligned_cols=178 Identities=11% Similarity=0.001 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC----CHHHHHHH
Q 023915 47 ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR----AHSEALSV 122 (275)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~ 122 (275)
.+|++.|++..+.| +...+..+-..|...+++++|...|++..+.| +...+..|-..|.. + +.++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677788877763 56677788888889999999999999998876 45677778888888 7 89999999
Q ss_pred HHHHHhccccccHHhHHHHHHHHHh----ccchHHHHHHHHHhhcCCC----hhHHHHHHHHHHh----cCChhHHHHHH
Q 023915 123 YNMLRYSKRSMCKALHEKILHILIS----GKLLKDAYVVVKDNSESIS----HPAIKKFASAFVR----LGNINLVNDVM 190 (275)
Q Consensus 123 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~----~~~~~~a~~~~ 190 (275)
|+.....+. ...+..+-..|.. .+++++|..+|++..+..+ +..+..|-..|.. .+++++|...|
T Consensus 76 ~~~A~~~g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAGS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999876543 3355666666766 7899999999999988777 6788888888888 78999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHhch-----hHHHHHHHHHHHhhCCCCC
Q 023915 191 KAIHATGYRIDQGIFHIAIARYIAERE-----KKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 191 ~~m~~~g~~p~~~~y~~li~~~~~~~~-----~~~~a~~l~~~m~~~~~~p 236 (275)
+...+. .++...+..|-..|....| +.++|..+|+...+.|...
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 998875 2345566667767653333 7899999999998887543
No 90
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=8.5e-07 Score=74.50 Aligned_cols=190 Identities=14% Similarity=0.032 Sum_probs=120.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhc-----C--CCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhc-----C-CCC-ChhhH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAK-----Y--DKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-----A-ISP-DYNTF 68 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~t~ 68 (275)
.+...|+.++|++.|++..+. + ..| ...+|+.+-.+|...|++++|...+++..+. + ..| ...++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 456789999999999876542 1 122 4578999999999999999999999887642 1 112 23455
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHH---HhccCCHHHHHHHHHHHHhccccccHHhHHHHH
Q 023915 69 HILIKYFCK--EKMYILAYRTMVDMHRKGHQPE-EELCSSLIFH---LGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (275)
Q Consensus 69 ~~li~~~~~--~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 142 (275)
.....++.+ .+++++|...|++..+. .|+ ...+..+..+ +...++.++|++.++......+. +...+..+-
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~ 216 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHH
Confidence 555445544 45789999999998875 354 3344444433 34456777787777766543322 222333333
Q ss_pred HHHH----hccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 143 HILI----SGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 143 ~~~~----~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
..+. ..++.++|...+++... ...+..+..+...|...|++++|...++...+.
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3333 34567778887777554 333446677777888888888888888776664
No 91
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.94 E-value=7.5e-08 Score=78.86 Aligned_cols=193 Identities=8% Similarity=-0.034 Sum_probs=144.1
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcC-----CCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKY-----DKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHIL 71 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g-----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~l 71 (275)
..|...|+++.|...++...... ..+ ...+++.+-..|...|++++|.+.|++..+. +-.+ ...++..+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35778899999999998877531 111 2567889999999999999999999887753 2111 23467888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc----ccccHHhHHHHHH
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRK----GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK----RSMCKALHEKILH 143 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~ 143 (275)
...|...|+++.|...+++..+. +.+....++..+...|.+.|++++|...++...... .+.....+..+-.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999998761 223336688889999999999999999999877532 2222334555555
Q ss_pred HHHhccc---hHHHHHHHHHhhcCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 144 ILISGKL---LKDAYVVVKDNSESISH-PAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 144 ~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.+...++ +.+|+..+++....+.. ..+..+...|...|++++|...|+...+
T Consensus 309 ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666777 88888888874332222 2556788999999999999999987654
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=3.5e-07 Score=72.68 Aligned_cols=187 Identities=10% Similarity=-0.021 Sum_probs=132.3
Q ss_pred hcCcHHHHHHHHHHHHhc------CCCCcH----HhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCC-hhhHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAK------YDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHIL 71 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~------g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~l 71 (275)
..|++++|.+++++..+. +..++. ..|+.....|...|++++|.+.|.+..+. |-.+. ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467889999999877652 112332 36777788888889999999988877652 11111 3478888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHhccCCHHHHHHHHHHHHhcccc-----ccHHhHHHH
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGH---QPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS-----MCKALHEKI 141 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~l 141 (275)
...|.+.|+++.|...|++..+.-. .+. ..++..+-..|.+ |++++|+..|++....... ....++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8888899999999999988764311 122 3467778888888 9999999998876543211 124567778
Q ss_pred HHHHHhccchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 142 LHILISGKLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
-..+...|++++|+..|++... ....+ .+..+...+...|++++|...|+...
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888899999999999887654 22211 44555667777799999999998876
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=1.6e-07 Score=70.22 Aligned_cols=134 Identities=10% Similarity=-0.075 Sum_probs=63.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
+...+.+.|++++|...|++..+.. +-+...+..+-..+...|++++|...|+......+. +...+..+-..|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 4555555555665555555555442 223445555555555566666666666555443222 22234444444433322
Q ss_pred --hHHHHHHHHHhhcCCChhH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 023915 151 --LKDAYVVVKDNSESISHPA--IKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAI 209 (275)
Q Consensus 151 --~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li 209 (275)
.+.+...++.... +.+.. +...-.++...|++++|...|++..+ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~-~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS-PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2333334433322 22222 12223344456677777777776665 346655444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=8.4e-07 Score=68.58 Aligned_cols=169 Identities=13% Similarity=-0.014 Sum_probs=123.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHhccCCHHHHHHHHHHHHhccc-c-ccHHhH
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-S-MCKALH 138 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~-~~~~~~ 138 (275)
+...+-.+...+.+.|+++.|...|+++.+.. +-+ ...+..+..+|.+.|++++|...|+......+ . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44566677778889999999999999988753 112 56788888899999999999999998876532 2 224456
Q ss_pred HHHHHHHHh--------ccchHHHHHHHHHhhc-CCCh-hHH-----------------HHHHHHHHhcCChhHHHHHHH
Q 023915 139 EKILHILIS--------GKLLKDAYVVVKDNSE-SISH-PAI-----------------KKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 139 ~~li~~~~~--------~~~~~~a~~~~~~~~~-~~~~-~~~-----------------~~li~~~~~~~~~~~a~~~~~ 191 (275)
..+-.++.. .|++++|...|++... .+.. ... ..+...|...|++++|...|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666777777 8999999999998765 2222 222 345678889999999999999
Q ss_pred HHHHcCCCCC----hhhHHHHHHHHHHhc----------hhHHHHHHHHHHHhhCCCCCCh
Q 023915 192 AIHATGYRID----QGIFHIAIARYIAER----------EKKELLLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 192 ~m~~~g~~p~----~~~y~~li~~~~~~~----------~~~~~a~~l~~~m~~~~~~p~~ 238 (275)
...+.. |+ ...+..+..+|. .. |++++|...|++..+. .|+.
T Consensus 173 ~~l~~~--p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 173 AVFDAY--PDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHC--TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHC--CCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 987753 43 235555666664 33 8889999999988764 3554
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=3.4e-08 Score=71.82 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=24.0
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
+.+.|++++|...|+...+..+. +...+..+-..+.+.|++++|+..|+...
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 34445555555555444433211 33444444455555555555555554443
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=1.3e-07 Score=74.46 Aligned_cols=162 Identities=9% Similarity=0.011 Sum_probs=123.9
Q ss_pred CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH-H
Q 023915 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS-S 105 (275)
Q Consensus 28 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ 105 (275)
.+...+..+-..+.+.|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|...+++.... .|+..... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 35567778888888999999999999998873 354 456778888999999999999999988655 45544332 2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCC---hhHHHHHHHHHHhcC
Q 023915 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SIS---HPAIKKFASAFVRLG 181 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~li~~~~~~~ 181 (275)
....+.+.++.+.|...++......+. +...+..+-..+...|++++|...+.+... .+. ...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333466778888888888877655432 445778888899999999999999998766 333 336788999999999
Q ss_pred ChhHHHHHHHHHH
Q 023915 182 NINLVNDVMKAIH 194 (275)
Q Consensus 182 ~~~~a~~~~~~m~ 194 (275)
+.++|...++.-.
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999988887644
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4.1e-07 Score=68.81 Aligned_cols=172 Identities=11% Similarity=0.092 Sum_probs=95.3
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh----hHHHHHHHHHc
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDK-Y-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN----TFHILIKYFCK 77 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~li~~~~~ 77 (275)
.+.+.|++++|...|+.+....+. | ....+..+..++.+.|++++|++.|++..+. .|+.. .+-.+..++.+
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHh
Confidence 355566777777777766654322 1 1245556666666677777777777666652 23321 22222222222
Q ss_pred ------------------cCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhH
Q 023915 78 ------------------EKMYILAYRTMVDMHRKGHQPEEE-LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALH 138 (275)
Q Consensus 78 ------------------~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 138 (275)
.|++++|...|+++.+. .|+.. ++..... . ..+...+ ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~--------~~~~ 150 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL--------AKYE 150 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH--------HHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH--------HHHH
Confidence 34555555555555543 22211 1111000 0 0000000 0011
Q ss_pred HHHHHHHHhccchHHHHHHHHHhhc-CCChh----HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 023915 139 EKILHILISGKLLKDAYVVVKDNSE-SISHP----AIKKFASAFVRLGNINLVNDVMKAIHATG 197 (275)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g 197 (275)
..+-..+...|++++|...|++..+ .+..+ .+..+..+|.+.|++++|...++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 2455677889999999999998776 33322 46678889999999999999999888754
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=1e-06 Score=66.65 Aligned_cols=184 Identities=11% Similarity=0.015 Sum_probs=116.7
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCH-Hh
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQ-PEE-EL 102 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~ 102 (275)
+...+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+++.|...|++..+..-. +.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34455666677888999999999999988742 43 246777888999999999999999998875321 111 13
Q ss_pred HHHHHHHHhc------------------cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 103 CSSLIFHLGK------------------MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 103 ~~~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
+..+..++.+ .|+.++|...|+.+....+.... .+.+.... +.. ....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~-a~~a~~~l----~~~------~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY-TTDATKRL----VFL------KDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT-HHHHHHHH----HHH------HHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh-HHHHHHHH----HHH------HHHH---
Confidence 4334444433 35566666666665543221111 11110000 000 0000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 165 ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ----GIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 165 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
......+...|.+.|++++|...|+.+.+.- |+. ..+..+..+|. +.|+.++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhC
Confidence 0011245677889999999999999988853 443 45677777776 7899999999999988763
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=2.1e-07 Score=80.42 Aligned_cols=151 Identities=11% Similarity=-0.061 Sum_probs=112.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~ 86 (275)
.|++++|.+.|++..+.... +...|..+-..+.+.|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999998876433 5788999999999999999999999999874 354 6678899999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc---cchHHHHHHHHHhhc
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG---KLLKDAYVVVKDNSE 163 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 163 (275)
.+++..+.. +-+...+..+..+|.+.|++++|.+.|+........ +...+..+...+... |+.++|.+.+++...
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998764 345678999999999999999999999988765433 345778888889899 999999999998765
No 100
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=2.7e-06 Score=66.96 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=93.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC-CCCH----HhHHHHHHHHhccCCHHHHHHHHHHHHhcccc-cc----HHhHH
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMHRKGH-QPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS-MC----KALHE 139 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~ 139 (275)
..+..+...|+++.|...+++..+... .|+. ..+..+...+...|++++|...|+........ .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345666777777777777777665321 2221 12334555666667777777777766652111 11 22466
Q ss_pred HHHHHHHhccchHHHHHHHHHhhc----C-CChh----HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-hhhH
Q 023915 140 KILHILISGKLLKDAYVVVKDNSE----S-ISHP----AIKKFASAFVRLGNINLVNDVMKAIHAT----GYRID-QGIF 205 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~----~-~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~y 205 (275)
.+-..|...|++++|...+++... . ...+ .+..+...|...|++++|...++...+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 677777777777777777776552 1 2222 4566677777778888777777765442 22222 3456
Q ss_pred HHHHHHHHHhch-hHHHHHHHHHHHh
Q 023915 206 HIAIARYIAERE-KKELLLKLLEWMT 230 (275)
Q Consensus 206 ~~li~~~~~~~~-~~~~a~~l~~~m~ 230 (275)
..+-..|. ..| .+++|.+.+++..
T Consensus 240 ~~lg~~~~-~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLR-KLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCcHHHHHHHHHHHH
Confidence 66666665 445 4566776666553
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=7.5e-07 Score=66.42 Aligned_cols=88 Identities=6% Similarity=-0.094 Sum_probs=41.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
+-..+...|++++|++.|++.. .|+...+..+...+.+.|+++.|...|++..+.. +.+...+..+..+|.+.|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444555555555554432 3444445555555555555555555555544432 2233444445555555555
Q ss_pred HHHHHHHHHHHHh
Q 023915 116 HSEALSVYNMLRY 128 (275)
Q Consensus 116 ~~~a~~~~~~m~~ 128 (275)
+++|...|+....
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=2.1e-07 Score=82.19 Aligned_cols=171 Identities=9% Similarity=-0.078 Sum_probs=132.1
Q ss_pred hhcCcHHHHHHHHHHHH--------hcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHH
Q 023915 6 CRGGCFEEAKQLAGDFE--------AKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFC 76 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~ 76 (275)
...|++++|++.++... +.. ..+...+..+-.++.+.|++++|++.|++..+. .| +...|..+-..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 56789999999999987 432 236678888999999999999999999998873 35 4567888888999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (275)
+.|++++|...|++..+.. +-+...+..+-.++.+.|++++ .+.|+........ +...|..+-.++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998764 3356688889999999999999 9999988765433 34478888889999999999999
Q ss_pred HHHHhhcC-CC-hhHHHHHHHHHHhcCC
Q 023915 157 VVKDNSES-IS-HPAIKKFASAFVRLGN 182 (275)
Q Consensus 157 ~~~~~~~~-~~-~~~~~~li~~~~~~~~ 182 (275)
.|++.... +. ...+..+..++...+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99987663 22 2355556666655444
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=5.2e-07 Score=71.15 Aligned_cols=167 Identities=7% Similarity=0.047 Sum_probs=119.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC---
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDY----NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQ-PE--- 99 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~--- 99 (275)
....+...+..+...|++++|.+++++..+.. ..|+. ..+..+...+...++++.|...|++..+.... ++
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 46666677778888899999999998877632 23442 23445667777778999999999998874322 22
Q ss_pred -HHhHHHHHHHHhccCCHHHHHHHHHHHHh------ccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCC--
Q 023915 100 -EELCSSLIFHLGKMRAHSEALSVYNMLRY------SKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SIS-- 166 (275)
Q Consensus 100 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-- 166 (275)
..+++.+...|...|++++|...|+.... ........++..+-..|...|++++|...+++... ..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 23688888889999999999998888763 12222334778888888999999999888887543 111
Q ss_pred --hhHHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 023915 167 --HPAIKKFASAFVRLGN-INLVNDVMKAIHA 195 (275)
Q Consensus 167 --~~~~~~li~~~~~~~~-~~~a~~~~~~m~~ 195 (275)
...|..+-..|...|+ +++|...++....
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2367778888888884 6888888877544
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=1.3e-07 Score=66.78 Aligned_cols=114 Identities=8% Similarity=-0.080 Sum_probs=66.9
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~ 83 (275)
+...|++++|++.++........ +...+-.+-..|.+.|++++|++.|++..+. .| +..+|..+...+.+.|+++.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 34456666666666665443111 2334455666666777777777777666652 34 34456666666667777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHH
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (275)
|...|++..+.. +-+..++..+...|.+.|+.++|.+.
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 777777666542 22345666666666666666554443
No 105
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=4.6e-07 Score=66.93 Aligned_cols=154 Identities=9% Similarity=-0.051 Sum_probs=94.5
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHccCC
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILIKYFCKEKM 80 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~ 80 (275)
...|++++|.++++.+.. .......+++.+-..+...|++++|.+.+++..+. +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467888888885555543 22235677888888888888888888888877652 2222 23456777777888888
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc----cc-cccHHhHHHHHHHHHhcc
Q 023915 81 YILAYRTMVDMHRK----GHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KR-SMCKALHEKILHILISGK 149 (275)
Q Consensus 81 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~ 149 (275)
++.|...+++..+. +-.| ....+..+-..+...|++++|...+++.... +. .....++..+-..+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888876643 2111 1335666777777788888888777765432 11 111223344555555566
Q ss_pred chHHHHHHHHH
Q 023915 150 LLKDAYVVVKD 160 (275)
Q Consensus 150 ~~~~a~~~~~~ 160 (275)
++++|...+++
T Consensus 162 ~~~~A~~~~~~ 172 (203)
T 3gw4_A 162 NLLEAQQHWLR 172 (203)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666655554
No 106
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.73 E-value=9.3e-06 Score=68.16 Aligned_cols=194 Identities=7% Similarity=-0.076 Sum_probs=136.7
Q ss_pred cHHhHHHHHHHHHccC---CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHH
Q 023915 29 DVVLLNSMLCAYCRTG---DMESVMHVMRKLDELAISPDYNTFHILIKYFCKE----KMYILAYRTMVDMHRKGHQPEEE 101 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~~~~~ 101 (275)
+...+..|-..|.+.| +.++|++.|+...+.|- ++...+..|-..|... +++++|...|+... . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 3447888888888888 88899999988887763 4444445566666554 78899999998876 3 3344
Q ss_pred hHHHHHHH-H--hccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc-----chHHHHHHHHHhhcCCChhHHHHH
Q 023915 102 LCSSLIFH-L--GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK-----LLKDAYVVVKDNSESISHPAIKKF 173 (275)
Q Consensus 102 ~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~l 173 (275)
.+..+-.. + ...++.++|...|+.....+ +...+..+-..|. .| +.++|...|++.. .+.+.....+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~L 324 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHH
Confidence 55555555 3 45889999999999887666 3334555555555 44 8999999999988 7777777777
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHh---chhHHHHHHHHHHHhhCCCC
Q 023915 174 ASAFVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAE---REKKELLLKLLEWMTGQGYV 235 (275)
Q Consensus 174 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~---~~~~~~a~~l~~~m~~~~~~ 235 (275)
-..|.. ..+.++|...|+...+.|. ......|-..|... ..+.++|..+|+...+.|..
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 777766 3488999999988877663 34444555555421 24678899999888887753
No 107
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.71 E-value=1.4e-05 Score=67.01 Aligned_cols=213 Identities=7% Similarity=-0.092 Sum_probs=152.8
Q ss_pred hhhhcC---cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHcc----CCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-H
Q 023915 4 AFCRGG---CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRT----GDMESVMHVMRKLDELAISPDYNTFHILIKY-F 75 (275)
Q Consensus 4 ~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~ 75 (275)
.|.+.| +.++|++.|+...+.|.. +...+..|-..|... +++++|++.|+... . -+...+..|-.. +
T Consensus 185 ~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 185 VYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLY 259 (452)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHH
T ss_pred HHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHH
Confidence 345567 999999999999988754 666656677777655 79999999999987 3 344455555555 3
Q ss_pred --HccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC-----CHHHHHHHHHHHHhccccccHHhHHHHHHHHHh-
Q 023915 76 --CKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-----AHSEALSVYNMLRYSKRSMCKALHEKILHILIS- 147 (275)
Q Consensus 76 --~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~- 147 (275)
...+++++|...|++..+.| +...+..|-..|. .| +.++|.+.|+... . -+......+-..|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRG 331 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCC
Confidence 56899999999999999877 5566777777776 55 9999999999876 2 233445555556655
Q ss_pred ---ccchHHHHHHHHHhhcCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHH
Q 023915 148 ---GKLLKDAYVVVKDNSESISHPAIKKFASAFVR----LGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKE 220 (275)
Q Consensus 148 ---~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~ 220 (275)
..+.++|..+|++..+.+.+.....+-..|.. ..+.++|...|+.-.+.|.. +....-..+.... ..++.+
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~-~~~~~~ 409 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPL-TPAQRA 409 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTC-CHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhC-CHHHHH
Confidence 34899999999999988888888777777774 45889999999988887743 2222222222222 345666
Q ss_pred HHHHHHHHHhh
Q 023915 221 LLLKLLEWMTG 231 (275)
Q Consensus 221 ~a~~l~~~m~~ 231 (275)
+|..+.++-..
T Consensus 410 ~a~~~~~~~~~ 420 (452)
T 3e4b_A 410 EGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=7.2e-07 Score=77.10 Aligned_cols=151 Identities=12% Similarity=0.003 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 023915 43 TGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (275)
.|++++|.+.|++..+. .|+ ...+..+...+.+.|++++|...+++..+.. +-+...+..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999988763 354 6778899999999999999999999998753 3356788999999999999999999
Q ss_pred HHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 023915 122 VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRL---GNINLVNDVMKAIHAT 196 (275)
Q Consensus 122 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~ 196 (275)
.+++....... +...+..+-..+...|++++|.+.+++... ......+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988765433 355788889999999999999999999766 33445778888999999 9999999999998876
Q ss_pred C
Q 023915 197 G 197 (275)
Q Consensus 197 g 197 (275)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=1.2e-06 Score=68.97 Aligned_cols=160 Identities=8% Similarity=-0.023 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 143 (275)
+...+..+...+.+.|+++.|...|++..+.. +-+...+..+...+.+.|++++|...++........+ .........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHHHH
Confidence 33445556666667777777777777766542 2244566667777777777777777777654433211 111222222
Q ss_pred HHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHhchh
Q 023915 144 ILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID---QGIFHIAIARYIAEREK 218 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~y~~li~~~~~~~~~ 218 (275)
.+...++.++|...+++... ..++..+..+...|...|++++|...|....+.. |+ ...+..+...|. ..|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~-~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILA-ALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHH-HHCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHH-HcCC
Confidence 34455666666666666543 2233455666677777777777777777766643 32 345566665553 5566
Q ss_pred HHHHHHHHHH
Q 023915 219 KELLLKLLEW 228 (275)
Q Consensus 219 ~~~a~~l~~~ 228 (275)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 6666655554
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=5.1e-07 Score=79.78 Aligned_cols=183 Identities=8% Similarity=-0.138 Sum_probs=140.2
Q ss_pred HccCCHHHHHHHHHHHhhc------CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcc
Q 023915 41 CRTGDMESVMHVMRKLDEL------AISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (275)
...|++++|++.|++..+. ...| +...+..+...+.+.|++++|...|++..+.. +-+...|..+-.+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 7889999999999998711 1334 45678888899999999999999999998763 34567888999999999
Q ss_pred CCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 023915 114 RAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMK 191 (275)
Q Consensus 114 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 191 (275)
|++++|...|++....... +...+..+-..+...|++++ .+.|++... ......+..+..++...|++++|...|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998765433 34467888889999999999 999998765 3344578889999999999999999998
Q ss_pred HHHHcCCCCCh-hhHHHHHHHHHHhc--------hhHHHHHHHHHHH
Q 023915 192 AIHATGYRIDQ-GIFHIAIARYIAER--------EKKELLLKLLEWM 229 (275)
Q Consensus 192 ~m~~~g~~p~~-~~y~~li~~~~~~~--------~~~~~a~~l~~~m 229 (275)
...+. .|+. ..+..+..++. .. +++++|.+.+..+
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLL-SGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC--------CCHHHHHHHHHHHHTS
T ss_pred hhccc--CcccHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHhhC
Confidence 87664 4653 45555555553 32 3455555555444
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=2.9e-06 Score=63.21 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=83.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+...|++++|...|+... .|+...|..+...+.+.|++++|++.|++..+.. +.+...|..+...+.+.|+++.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 4566788888888877663 5577788888888888888888888888777642 2345567777788888888888
Q ss_pred HHHHHHHHHHcCCC--------------C-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 84 AYRTMVDMHRKGHQ--------------P-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 84 a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
|...|++..+..-. | ....+..+..+|.+.|++++|...|+.....
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888887764311 1 1145556666666666666666666665544
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.69 E-value=2.9e-06 Score=63.33 Aligned_cols=134 Identities=10% Similarity=-0.041 Sum_probs=92.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcC
Q 023915 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLG 181 (275)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~ 181 (275)
..+-.+|.+.|++++|...|+......+. +...+..+-..+...|++++|...|++... ..++..+..+...|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 34888899999999999999998765433 455788899999999999999999999766 334447777777776655
Q ss_pred C--hhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 023915 182 N--INLVNDVMKAIHATGYRIDQGI--FHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLIL 245 (275)
Q Consensus 182 ~--~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li 245 (275)
. .+.+...++... .|+... +...-.++. ..|++++|...|++..+ +.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKL-FTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHH-HccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3 344555555443 344332 222222333 46889999999999876 468865544443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=8.3e-07 Score=70.54 Aligned_cols=184 Identities=10% Similarity=-0.048 Sum_probs=128.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcC----CCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKY----DKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILI 72 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li 72 (275)
..|...|++++|.+.|....... -.+ -..+|+.+...|.+.|++++|++.|++..+. |-.+ -..+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34667789999999888776531 111 1457899999999999999999999887642 2111 245778888
Q ss_pred HHHHccCCHHHHHHHHHHHHHcC----CCC-CHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc----cccc-HHhHHHHH
Q 023915 73 KYFCKEKMYILAYRTMVDMHRKG----HQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSK----RSMC-KALHEKIL 142 (275)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~-~~~~~~li 142 (275)
..|.+ |+++.|+..|++..+.. -.+ ...++..+...|.+.|++++|...|++..... ..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 88988 99999999999987532 111 13578889999999999999999999877532 2121 23566677
Q ss_pred HHHHhccchHHHHHHHHHhhcCCChh------HHHHHHHHHHhcCChhHHHH
Q 023915 143 HILISGKLLKDAYVVVKDNSESISHP------AIKKFASAFVRLGNINLVND 188 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~ 188 (275)
..+...|++++|...|++....+..+ ....++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77788899999999999976211111 233444444 4566655555
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=2.2e-06 Score=63.16 Aligned_cols=154 Identities=8% Similarity=-0.045 Sum_probs=100.1
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHhccCC
Q 023915 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRA 115 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~ 115 (275)
...|++++|.+.++..... ......++..+...+...|+++.|...+++..+. |..| ...++..+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578889998855544331 1134567788888888899999999988887652 2222 23467777788888899
Q ss_pred HHHHHHHHHHHHhc----ccc--ccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcC
Q 023915 116 HSEALSVYNMLRYS----KRS--MCKALHEKILHILISGKLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLG 181 (275)
Q Consensus 116 ~~~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~ 181 (275)
+++|...+++.... +.. .....+..+-..+...|++++|...+++... .+.+. .+..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99888888876543 211 2234566677777778888888888776543 22222 2455667777778
Q ss_pred ChhHHHHHHHHHHH
Q 023915 182 NINLVNDVMKAIHA 195 (275)
Q Consensus 182 ~~~~a~~~~~~m~~ 195 (275)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88877777766544
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=7.8e-07 Score=64.50 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
+..+...+.+.|++++|...|++..+ ..|+ ...+..+...+.+.|++++|...++...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 33444445555555555555555443 2232 3344455555555555555555555544
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=7.2e-06 Score=64.53 Aligned_cols=167 Identities=7% Similarity=0.020 Sum_probs=122.6
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-CCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CCC-
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PDY----NTFHILIKYFCKEKMYILAYRTMVDMHRKGH---QPE- 99 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~~~- 99 (275)
....+...+..+...|++++|.+.+.+..+..-. ++. ..+..+...+...|+++.|+..+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 5677777888999999999999999887764321 111 2344566677888999999999999875322 122
Q ss_pred -HHhHHHHHHHHhccCCHHHHHHHHHHHHhc----cccc--cHHhHHHHHHHHHhccchHHHHHHHHHhhcC----CC--
Q 023915 100 -EELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSM--CKALHEKILHILISGKLLKDAYVVVKDNSES----IS-- 166 (275)
Q Consensus 100 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-- 166 (275)
..+|+.+-..|...|++++|...|+..... +..+ ...++..+-..|...|++++|...+++.... ..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 348888999999999999999999987631 1111 2257888899999999999999999875431 11
Q ss_pred --hhHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 023915 167 --HPAIKKFASAFVRLGNINLV-NDVMKAIHA 195 (275)
Q Consensus 167 --~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 195 (275)
...|..+...|...|+.++| ...++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 23677888899999999999 776766443
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.1e-06 Score=68.91 Aligned_cols=195 Identities=7% Similarity=-0.099 Sum_probs=124.1
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
+...+..+-..+.+.|++++|+..|++..+. .| +...|..+...+.+.|+++.|...+++..+.. +-+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567788888899999999999999998874 35 56778888899999999999999999988653 33566888899
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHH
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVN 187 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 187 (275)
.+|.+.|++++|...|+.......... ..+...+....+......... ... ...+..+.....+..+ ..|+.++|.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~~~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQR-LNFGDDIPSALRIAKKKRWNS-IEE-RRIHQESELHSYLTRL-IAAEREREL 155 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCSHHHHHHHHHHHHHHHH-HHH-TCCCCCCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHHHHHHHHHHHH-HHH-HHHhhhHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999988765432110 011111221111111111111 111 1222223333333333 368888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH-HHHhchhHHHHHHHHHHHhhC
Q 023915 188 DVMKAIHATGYRIDQGIFHIAIAR-YIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 188 ~~~~~m~~~g~~p~~~~y~~li~~-~~~~~~~~~~a~~l~~~m~~~ 232 (275)
+.++...+ ..|+......-+.. +....+.++++.++|.+..+.
T Consensus 156 ~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88776555 35665433333333 332347788899999887653
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=3.7e-06 Score=56.40 Aligned_cols=98 Identities=17% Similarity=0.085 Sum_probs=73.7
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|+++.|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5677778888888888888888888877642 2345667777888888888888888888887653 3456677777888
Q ss_pred HhccCCHHHHHHHHHHHHhc
Q 023915 110 LGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~ 129 (275)
+.+.|++++|...++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 88888888888888876654
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=7.4e-06 Score=64.48 Aligned_cols=165 Identities=10% Similarity=-0.037 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-H----HhHHHHHHHHhccCCHHHHHHHHHHHHhcc---ccc--
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE-E----ELCSSLIFHLGKMRAHSEALSVYNMLRYSK---RSM-- 133 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~-- 133 (275)
....+...+..+...|+++.|...+.+..+.....+ . ..+..+...+...|++++|...++...... ..+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345677788899999999999999998876542221 1 234456677788899999999999876431 111
Q ss_pred cHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCCh-----hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC
Q 023915 134 CKALHEKILHILISGKLLKDAYVVVKDNSE----SISH-----PAIKKFASAFVRLGNINLVNDVMKAIHAT----GYRI 200 (275)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p 200 (275)
...+++.+-..|...|++++|...+++... .+.. ..+..+...|...|++++|...++...+. +..+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 144788899999999999999999998652 2221 36778889999999999999999986653 1111
Q ss_pred C-hhhHHHHHHHHHHhchhHHHH-HHHHHHH
Q 023915 201 D-QGIFHIAIARYIAEREKKELL-LKLLEWM 229 (275)
Q Consensus 201 ~-~~~y~~li~~~~~~~~~~~~a-~~l~~~m 229 (275)
. ..+|..+-..|. ..|+.++| ...+++.
T Consensus 234 ~~~~~~~~lg~~y~-~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 234 LIGQLYYQRGECLR-KLEYEEAEIEDAYKKA 263 (293)
T ss_dssp SHHHHHHHHHHHHH-HTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCcHHHHHHHHHHH
Confidence 1 456777777775 66888888 6666654
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=3.1e-06 Score=60.13 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=96.5
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
....+..+...+...|++++|...|++..+.. +.+..++..+...+...|+++.|...+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567777788888899999999988887642 2246677788888888899999999998888763 345667888888
Q ss_pred HHhccCCHHHHHHHHHHHHhccccccHHhH--HHHHHHHHhccchHHHHHHHHHhh
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALH--EKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
++.+.|++++|...|+......... ...+ ......+...|++++|...+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888999999999998877653322 2233 334444667888888888887653
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=2.7e-06 Score=57.10 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=85.1
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+.+.|++++|.+.|+.+..... .+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYD 94 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH
Confidence 457789999999999999988643 367889999999999999999999999998753 345678889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHh
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (275)
.|...++++.+.. +.+...+..+-..+.
T Consensus 95 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 95 EAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 9999999998764 233445554444443
No 122
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=0.00019 Score=59.34 Aligned_cols=192 Identities=8% Similarity=-0.066 Sum_probs=139.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCc----------------HHhHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCChh
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYD----------------VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDYN 66 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ 66 (275)
.+.+.|++++|.+.|..+.+.....+ ..++..+...|...|++++|.+.+...... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 46788999999999999987533211 124788999999999999999999887652 1112221
Q ss_pred ----hHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhc----c-cc
Q 023915 67 ----TFHILIKYFCKEKMYILAYRTMVDMHR----KGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYS----K-RS 132 (275)
Q Consensus 67 ----t~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~ 132 (275)
..+.+-..+...|+.+.|..+++.... .+..+. ..++..+...|...|++++|..++++.... + .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 222333344456899999999988763 344444 347788999999999999999999987642 1 22
Q ss_pred ccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCChh-----HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 133 MCKALHEKILHILISGKLLKDAYVVVKDNSE----SISHP-----AIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.....+......|...|++++|...+++... .+.++ .+..+...+...++++.|...|.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2345788899999999999999999987543 23332 345566777888999999888876544
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.57 E-value=2.5e-05 Score=68.55 Aligned_cols=232 Identities=9% Similarity=-0.011 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHH-HHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 023915 12 EEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVM-HVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVD 90 (275)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 90 (275)
+.+..+|++....-+. +...|-....-+.+.|+.++|. ++|+..... ++.+...|-..+...-+.|+++.|..+|+.
T Consensus 326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455667777665332 6667777777777788888886 888888752 334455566777788888999999999998
Q ss_pred HHHcC---------CCCC------------HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh-c
Q 023915 91 MHRKG---------HQPE------------EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS-G 148 (275)
Q Consensus 91 m~~~g---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~ 148 (275)
+.... -.|+ ..+|...+....+.|+.+.|..+|....+.........|......--+ .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 87641 0132 236777777778888999999999988765222222334332222223 3
Q ss_pred cchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHhchhHHHHHH
Q 023915 149 KLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRI--DQGIFHIAIARYIAEREKKELLLK 224 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~y~~li~~~~~~~~~~~~a~~ 224 (275)
++.+.|..+|+...+ ..++..+..++......|+.+.|..+|+........+ ....|...+.- =...|..+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f-E~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF-ESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH-HHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHcCCHHHHHH
Confidence 458899999988665 2333455677888888899999999998877653211 22355555543 346688888999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHH
Q 023915 225 LLEWMTGQGYVVDSSTRNLILKNS 248 (275)
Q Consensus 225 l~~~m~~~~~~p~~~t~~~li~~~ 248 (275)
+.+++.+. .|+......+++-|
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHh
Confidence 99888765 35555555555555
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=6e-06 Score=58.62 Aligned_cols=126 Identities=7% Similarity=-0.118 Sum_probs=77.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
.+..+...+...|+++.|...|++..+.. +.+..++..+...+...|++++|...++....... .+...+..+-..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 45566666777777777777777766543 23455666677777777777777777776654432 23445666666777
Q ss_pred hccchHHHHHHHHHhhcC-C-ChhHHH--HHHHHHHhcCChhHHHHHHHHHH
Q 023915 147 SGKLLKDAYVVVKDNSES-I-SHPAIK--KFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~-~-~~~~~~--~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
..|++++|...+++.... + .+..+. .....+...|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777765542 2 222332 22333556677777777766544
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=9.7e-07 Score=62.29 Aligned_cols=113 Identities=13% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHH
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (275)
+...|++++|++.+..... ..|+ ...+-.+-..|.+.|+++.|...|++..+.. +-+..+|..+-..|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3455667777777766554 2233 2344566677777777777777777777653 2345567777777777777777
Q ss_pred HHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHH
Q 023915 119 ALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 119 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (275)
|...|+......+. +...+..+-..|.+.|+.++|.+
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHH
Confidence 77777766543222 23345555555555555554433
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=6.8e-06 Score=55.87 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=77.4
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
..+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456678888888888889999988888887632 2256677788888888888888888888887753 3356677778
Q ss_pred HHHHhccCCHHHHHHHHHHHHhc
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
..++.+.|++++|.+.|+.....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888877654
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.2e-06 Score=63.32 Aligned_cols=123 Identities=10% Similarity=-0.018 Sum_probs=86.0
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHccCCH--
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-FCKEKMY-- 81 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~~~~-- 81 (275)
+...|++++|...++........ +...|..+...+...|++++|...|++..+.. +.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888887766433 66778888888888888888888888877632 1244556666666 6677887
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
+.|...+++..+.. +-+...+..+...|...|++++|...|+......
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887653 3345677777778888888888888888776543
No 128
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.51 E-value=1.5e-05 Score=69.90 Aligned_cols=203 Identities=11% Similarity=0.007 Sum_probs=153.5
Q ss_pred hhhcCcHHHHH-HHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC---------CCCC----------
Q 023915 5 FCRGGCFEEAK-QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA---------ISPD---------- 64 (275)
Q Consensus 5 ~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~---------- 64 (275)
+-+.|+.++|. ++|+...... +.+...|-..+...-+.|+++.|.++|+.+.+.. -.|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 34567788896 9999988753 3466677888888889999999999999988641 0142
Q ss_pred --hhhHHHHHHHHHccCCHHHHHHHHHHHHHc-C-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH
Q 023915 65 --YNTFHILIKYFCKEKMYILAYRTMVDMHRK-G-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK 140 (275)
Q Consensus 65 --~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 140 (275)
...|...+....+.|+.+.|..+|...++. + ..+......+.+...+ .++.+.|.++|+...+. .+-+...+..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 236788888888899999999999999876 2 2233333333444322 35699999999988765 3334556778
Q ss_pred HHHHHHhccchHHHHHHHHHhhcCCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 023915 141 ILHILISGKLLKDAYVVVKDNSESIS-----HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARY 212 (275)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 212 (275)
.++.....|+.+.|..+|+....... ...|..++..-.+.|+.+.+..+.+.+.+. .|+......+++.|
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888889999999999999877443 236788888888999999999999999986 47777777777776
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=6.9e-06 Score=63.79 Aligned_cols=185 Identities=10% Similarity=-0.066 Sum_probs=95.7
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCcHHhHHHH-------HHHHHccCCHHHHHHHHHHHhhcCCCCChh-------------
Q 023915 7 RGGCFEEAKQLAGDFEAKYDKYDVVLLNSM-------LCAYCRTGDMESVMHVMRKLDELAISPDYN------------- 66 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------- 66 (275)
..++...|.+.|....+..+. ....|..+ ...+.+.++..+++..+..-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccc
Confidence 467777777777777766433 44456555 233333333444433333322 2333221
Q ss_pred ---------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc-cHH
Q 023915 67 ---------TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-CKA 136 (275)
Q Consensus 67 ---------t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~ 136 (275)
..-.....+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+.......+. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 11234445566677777777776665432 433344444445666667777766665332211110 122
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcCCC-hh----HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSESIS-HP----AIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
.+..+-.++...|++++|+..|++....+. |. .....-.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555566666666666666666554332 11 2233445556666666666666666654
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=6.3e-06 Score=56.19 Aligned_cols=103 Identities=13% Similarity=-0.026 Sum_probs=81.1
Q ss_pred CCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 26 DKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 26 ~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
+.|+. ..+...-..|.+.|++++|++.|++..+.. +.+...|..+..++.+.|+++.|+..|++..+.. +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 34443 467778888899999999999998887732 2346678888888999999999999999988763 34567888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
.+-.+|...|++++|.+.|+...+..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 88889999999999999998877543
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=1.1e-05 Score=54.41 Aligned_cols=118 Identities=13% Similarity=0.064 Sum_probs=76.2
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45566777777777888888888887776532 2245566777777777788888888877777653 334556677777
Q ss_pred HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
.+.+.|++++|...|+........ +...+..+...+...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 777777777777777766544322 2234444444444443
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=7.6e-06 Score=55.29 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=90.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
..+...|++++|...|+........ +...+..+...+...|++++|.+.++...+.. +.+...+..+...+.+.|+++
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHH
Confidence 4567889999999999999876433 67889999999999999999999999988742 234667888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
.|...|++..+.. +.+...+..+..++.+.|+.
T Consensus 98 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 98 EAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999998764 33556777777777776654
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.7e-06 Score=60.88 Aligned_cols=98 Identities=18% Similarity=-0.005 Sum_probs=73.0
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
+...+..+-..+.+.|++++|+..|+..... .| +...|..+..++.+.|++++|...|++..+.. +-+...+..+-
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4456677777888888888888888887763 34 45567777778888888888888888887653 33456777788
Q ss_pred HHHhccCCHHHHHHHHHHHHhc
Q 023915 108 FHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
.+|...|++++|...|+.....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888876543
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=8.4e-06 Score=65.62 Aligned_cols=122 Identities=9% Similarity=-0.048 Sum_probs=74.1
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----------------YNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
+...|..+-..+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666677777777777777777776653 233 2566666666667777777777777666
Q ss_pred HcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHH
Q 023915 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 93 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
+.. +.+...|..+-.+|...|++++|...|+......+. +...+..+-..+...|+.++|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 543 234556666666666666666666666665543222 223455555555555555555
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=1.4e-05 Score=56.35 Aligned_cols=97 Identities=10% Similarity=0.015 Sum_probs=67.2
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
...+..+-..+.+.|++++|++.|+...+. .| +...|..+-.++.+.|++++|...|++..+.. +-+...|..+-.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 345666667777777777777777777763 34 34566677777777777777777777777653 234556777777
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 023915 109 HLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~ 129 (275)
+|.+.|++++|...|+.....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-05 Score=53.80 Aligned_cols=98 Identities=11% Similarity=-0.078 Sum_probs=62.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHH
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 142 (275)
.+...+..+...+.+.|+++.|...|++..+.. +.+...+..+...+...|++++|...++........ +...+..+-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 344566777777778888888888888777542 235566777777777777777777777766543222 233455555
Q ss_pred HHHHhccchHHHHHHHHHhh
Q 023915 143 HILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~ 162 (275)
..+...|++++|...+++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 55555566666655555543
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.39 E-value=0.00043 Score=54.72 Aligned_cols=217 Identities=7% Similarity=-0.009 Sum_probs=153.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC--CHHHHHHHHHHHhhcCCCCChh-hHHHHHHHH----Hcc---
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVMHVMRKLDELAISPDYN-TFHILIKYF----CKE--- 78 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~----~~~--- 78 (275)
...++|+++++.+...++. +...||.--..+...| ++++++++++.+... .|... +|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhcccc
Confidence 3446899999998887554 5667888777888888 999999999999874 35433 344332222 344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHH--HHHHHHHHHHhccccccHHhHHHHHHHHHhccc------
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS--EALSVYNMLRYSKRSMCKALHEKILHILISGKL------ 150 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------ 150 (275)
+++++++.+++.+.+.. +-|..+|+.--..+.+.|.++ ++++.++.+....+.- -..|+..-..+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-NSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccccchhhh
Confidence 78999999999999763 557778887777777788887 9999999888765443 3356655555556665
Q ss_pred hHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChh-HHHHHHHHHHHcC--CCCChhhHHHHHHHHHHhchhHHHHHHH
Q 023915 151 LKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNIN-LVNDVMKAIHATG--YRIDQGIFHIAIARYIAEREKKELLLKL 225 (275)
Q Consensus 151 ~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g--~~p~~~~y~~li~~~~~~~~~~~~a~~l 225 (275)
++++++.+++... ..+...++-.-..+.+.|+.. .+..+...+.+.+ -..+...+..+...|. +.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~-~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT-QQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-ccCCHHHHHHH
Confidence 8888888887655 344446766666777777643 4555665554432 1235677888888886 67889999999
Q ss_pred HHHHhh
Q 023915 226 LEWMTG 231 (275)
Q Consensus 226 ~~~m~~ 231 (275)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=9e-06 Score=55.47 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=68.6
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCC----HHh
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKG--HQPE----EEL 102 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~ 102 (275)
...+..+-..+.+.|++++|++.|++..+. .|+ ...|..+-.+|.+.|++++|+..+++..+.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345667777788888888888888877763 344 4567777778888888888888888776532 1111 135
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
|..+-.++...|++++|.+.|+.....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666777788888888888888876553
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.35 E-value=1.8e-05 Score=53.86 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=66.3
Q ss_pred CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHH
Q 023915 61 ISPDY-NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE 139 (275)
Q Consensus 61 ~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 139 (275)
+.|+. ..+...-..|.+.|++++|+..|++..+.. +.+..+|..+-.+|.+.|++++|+..|+........ +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 33443 345566667777777777777777776653 335566777777777777777777777766554322 234566
Q ss_pred HHHHHHHhccchHHHHHHHHHhhc
Q 023915 140 KILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
.+-.++...|++++|.+.|++..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677777777777777777777554
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=7.2e-06 Score=57.86 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=80.6
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~ 82 (275)
.+.+.|++++|...|+......+. +...|..+-.++...|++++|++.|++..+ +.|+ ...|..+-.++.+.|+++
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHH
Confidence 567899999999999999987554 788999999999999999999999999988 4454 567889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 023915 83 LAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~ 100 (275)
+|...|++..+.. |+.
T Consensus 122 eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 122 KAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHhC--CCH
Confidence 9999999999864 554
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=3e-05 Score=51.20 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=68.0
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+...+..+...+...|++++|.+.|++..... +.+...+..+...+.+.|+++.|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34566677777777788888888877776632 1245566677777777778888877777777653 234556677777
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 023915 109 HLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~ 129 (275)
++.+.|++++|...++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777776544
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=1.6e-05 Score=63.92 Aligned_cols=123 Identities=9% Similarity=0.032 Sum_probs=101.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCc--------------HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYD--------------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 68 (275)
..+.+.|++++|...|+.......... ...|..+-.++.+.|++++|++.|++..+.. +.+...|
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 233 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 233 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 356788999999999999998754422 5899999999999999999999999998843 2356788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHH-HHHHHHHH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA-LSVYNMLR 127 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 127 (275)
..+..++...|+++.|...|++..+.. +-+...+..+..++.+.|+.+++ ...|+.|.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998763 33566888899999999999888 44555554
No 143
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=0.00013 Score=60.33 Aligned_cols=192 Identities=9% Similarity=-0.059 Sum_probs=132.3
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCC-C---------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCH
Q 023915 38 CAYCRTGDMESVMHVMRKLDELAISP-D---------------YNTFHILIKYFCKEKMYILAYRTMVDMHRK-GHQPEE 100 (275)
Q Consensus 38 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~ 100 (275)
..+.+.|++++|++.|....+..-.. + ...+..+...|.+.|++++|..++...... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34677899999999999988643111 1 123678899999999999999999987642 112222
Q ss_pred ----HhHHHHHHHHhccCCHHHHHHHHHHHHhc----c-ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc----CCCh
Q 023915 101 ----ELCSSLIFHLGKMRAHSEALSVYNMLRYS----K-RSMCKALHEKILHILISGKLLKDAYVVVKDNSE----SISH 167 (275)
Q Consensus 101 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~ 167 (275)
.+.+.+-..+...|+.+.+..+++..... + ......++..+...+...|++++|..++.+... ..+.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12333334455678999999998876542 2 223355778899999999999999999988643 1111
Q ss_pred ----hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 168 ----PAIKKFASAFVRLGNINLVNDVMKAIHAT----GYRID--QGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 168 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
..+..++..|...|++++|..+++..... +..|. ...+..+...+ ...+++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH-CEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 26778889999999999999999886553 11111 12344444444 36788888887776654
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=1.3e-05 Score=52.56 Aligned_cols=100 Identities=9% Similarity=-0.030 Sum_probs=66.6
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP--EEELCSSL 106 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 106 (275)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34456666677777777777777777776532 1234566667777777777777777777776643 22 45566777
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHhcc
Q 023915 107 IFHLGKM-RAHSEALSVYNMLRYSK 130 (275)
Q Consensus 107 i~~~~~~-g~~~~a~~~~~~m~~~~ 130 (275)
...+.+. |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777 77777777777766543
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=2.5e-05 Score=55.62 Aligned_cols=99 Identities=10% Similarity=-0.085 Sum_probs=79.7
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
+...|..+-..+.+.|++++|++.|++..+. .| +...|..+...|.+.|++++|+..|++..+.. +-+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567888888888999999999999888774 34 56677888888889999999999999888764 33467888888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcc
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
.+|.+.|++++|...|+......
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888999999999888876543
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=2.2e-05 Score=56.64 Aligned_cols=118 Identities=11% Similarity=0.005 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH-HHhccch--HH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI-LISGKLL--KD 153 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 153 (275)
..|+++.|...++...+.. +.+...+..+...|...|++++|...|+........ +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555432 233445555555666666666666666655443221 22334444444 4455555 66
Q ss_pred HHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 154 AYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 154 a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
|...+++... ...+..+..+...|...|++++|...|+...+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666665443 222335556666677777777777777766654
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6e-05 Score=50.90 Aligned_cols=98 Identities=10% Similarity=-0.045 Sum_probs=72.6
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
...|..+-..+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4556677777888888888888888877632 2245677778888888888888888888887653 3345677778888
Q ss_pred HhccCCHHHHHHHHHHHHhc
Q 023915 110 LGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~ 129 (275)
+...|++++|...|+.....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888876644
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=5.7e-06 Score=64.84 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=118.5
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|...|+........ +...|..+-.++.+.|++++|++.+++..+. .|+ ...+..+..++...|++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3567899999999999999987443 7888999999999999999999999998874 454 56788889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++|...|++..+.. |+. ..+...+....+.. .+ .-+..........+..... .+..+ ..|+.++|.+.++.
T Consensus 89 ~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~-~l~~l-~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 89 DEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHS-YLTRL-IAAERERELEECQR 160 (281)
T ss_dssp HHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHH-HHHHH-HHHHHHHHHTTTSG
T ss_pred HHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHH-HHHHH-HHHHHHHHHHHHHh
Confidence 99999999987642 211 11111222111111 11 1122222233333332322 22333 26888999988887
Q ss_pred hhcC-CChh-HHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 023915 161 NSES-ISHP-AIKKFASAFVRL-GNINLVNDVMKAIHA 195 (275)
Q Consensus 161 ~~~~-~~~~-~~~~li~~~~~~-~~~~~a~~~~~~m~~ 195 (275)
..+. +... ....+-..+... +.+++|.++|....+
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6653 2222 223333444444 678889999987665
No 149
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=2.4e-05 Score=54.85 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CH
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PD----YNTFHILIKYFCKEKMYILAYRTMVDMHRKG----HQP-EE 100 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~ 100 (275)
.++..+-..+...|++++|++.+++..+..-. ++ ..++..+...+...|++++|...+++..+.. -.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45667777777788888888887776642110 11 1356666667777777777777777765321 111 12
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 101 ELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
..+..+...+...|++++|...++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555556666666666666665543
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=2.6e-06 Score=62.91 Aligned_cols=96 Identities=8% Similarity=-0.022 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCC--------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPD--------------YNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
..+..+-..+.+.|++++|++.|++..+.. -.|+ ...|..+..++.+.|+++.|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345555566666666666666666665421 0110 1345555555555666666666666555442
Q ss_pred CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
+.+...+..+..+|...|++++|...|+...
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2234455555555555556665555555544
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.24 E-value=2.4e-05 Score=52.84 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=63.1
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----HHhH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGH--QPE----EELC 103 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~ 103 (275)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666667777777777777777766532 23445566666777777777777777777665421 112 4556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 104 SSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
..+...+.+.|++++|.+.|+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666677777777777777766543
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=2.6e-05 Score=51.06 Aligned_cols=90 Identities=7% Similarity=-0.104 Sum_probs=78.0
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC---ChhhHHHHHHHHHcc-
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---DYNTFHILIKYFCKE- 78 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~- 78 (275)
..+.+.|++++|...|+...+.... +...|..+...+...|++++|.+.|++..+. .| +...+..+...+.+.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHHHHHh
Confidence 3567889999999999999887543 6778999999999999999999999999874 34 467888999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 023915 79 KMYILAYRTMVDMHRKG 95 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g 95 (275)
|++++|.+.++......
T Consensus 91 ~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEH 107 (112)
T ss_dssp SCSHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999999999998764
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=7.3e-05 Score=51.11 Aligned_cols=100 Identities=7% Similarity=-0.195 Sum_probs=80.6
Q ss_pred CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 023915 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLI 107 (275)
Q Consensus 28 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (275)
.+...|..+-..+...|++++|+..|+...+.. +.+...|..+...+...|+++.|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 367788888888999999999999998887743 2245678888888889999999999999988764 33566888888
Q ss_pred HHHhccCCHHHHHHHHHHHHhc
Q 023915 108 FHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
.++...|++++|...|+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8899999999999998887654
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=3.5e-05 Score=53.47 Aligned_cols=97 Identities=13% Similarity=-0.029 Sum_probs=70.7
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
...+..+-..+.+.|++++|.+.|+..... .| +...|..+...+.+.|+++.|...|+...+.. +-+...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 345566667777888888888888887763 24 45566777778888888888888888887654 334556777777
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 023915 109 HLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~ 129 (275)
+|...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888776543
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=4.6e-05 Score=53.35 Aligned_cols=128 Identities=11% Similarity=-0.080 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHhccCCHHHHHHHHHHHHhccc-----cccH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQ-PE----EELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-----SMCK 135 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~ 135 (275)
.++..+...+...|+++.|...+++..+.... ++ ..++..+...+...|++++|...++....... ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777777888888888888777643111 11 13566677777777888887777776543211 1112
Q ss_pred HhHHHHHHHHHhccchHHHHHHHHHhhc----CCChh----HHHHHHHHHHhcCChhHHHHHHHHH
Q 023915 136 ALHEKILHILISGKLLKDAYVVVKDNSE----SISHP----AIKKFASAFVRLGNINLVNDVMKAI 193 (275)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m 193 (275)
..+..+-..+...|++++|...+++... ...++ .+..+...+...|++++|...+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444455555566666666665555332 11111 2333444445555555555554443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=5.5e-05 Score=52.33 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=77.2
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS 104 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (275)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 566788888888889999999999988876 3466 5677788888888889999988888887653 33566777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 105 SLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
.+..++...|++++|...|+.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7888888888888888888877654
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.2e-05 Score=51.22 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=77.4
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~ 82 (275)
.+.+.|++++|...|+...+.... +...|..+-.++.+.|++++|++.|++..+. .|+ ...|..+..++...|+++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCHH
Confidence 567899999999999999987544 7789999999999999999999999999874 354 567888999999999999
Q ss_pred HHHHHHHHHHHc
Q 023915 83 LAYRTMVDMHRK 94 (275)
Q Consensus 83 ~a~~~~~~m~~~ 94 (275)
+|...|++..+.
T Consensus 90 ~A~~~~~~al~~ 101 (126)
T 3upv_A 90 SALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=6e-05 Score=50.75 Aligned_cols=63 Identities=6% Similarity=-0.159 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
..+..+...+...|+++.|...|++..+.. +.+...+..+...+...|++++|...++.....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 456667777778888888888888877653 345566777777777788888888777776543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=0.00015 Score=47.75 Aligned_cols=97 Identities=9% Similarity=-0.159 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH
Q 023915 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (275)
Q Consensus 65 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 144 (275)
...+..+...+...|+++.|...|++..+.. +.+...+..+...+.+.|++++|...++........ +...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3455666667777777777777777776543 234556666666777777777777777665543221 23344445555
Q ss_pred HHhccchHHHHHHHHHhhc
Q 023915 145 LISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~ 163 (275)
+...|++++|...+++...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555433
No 160
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.18 E-value=0.0014 Score=51.79 Aligned_cols=191 Identities=9% Similarity=-0.032 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHH----Hcc---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAY----CRT---GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
++++++++++.+....++ +..+|+.--..+ ... +++++++++++.+.+.. +-+..+|+.---.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC
Confidence 899999999999987665 666676554444 444 78999999999998742 235667777777777788887
Q ss_pred --HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC------HHHHHHHHHHHHhccccccHHhHHHHHHHHHhccch-HH
Q 023915 83 --LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA------HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL-KD 153 (275)
Q Consensus 83 --~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~ 153 (275)
.++..++.+.+.. +-|..+|+.--..+.+.+. ++++++.++......+. +...|+-.-..+.+.|+. +.
T Consensus 162 ~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHH
Confidence 9999999999865 4567788776666666666 88888888887765443 445777777777777774 44
Q ss_pred HHHHHHHhhcC-----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 023915 154 AYVVVKDNSES-----ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIF 205 (275)
Q Consensus 154 a~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 205 (275)
+..+..+.... .++..+..+...|.+.|+.++|.++++.+.+. +.|...-|
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~y 295 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNF 295 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHH
Confidence 55566665442 24446778889999999999999999998762 33544433
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=4.5e-05 Score=52.92 Aligned_cols=89 Identities=7% Similarity=-0.093 Sum_probs=76.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+.+.|++++|...|+......+. +...|..+-.++.+.|++++|+..|+...+.. +-+...+..+..++...|+++.
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 567889999999999999987544 77889999999999999999999999998743 2234567788899999999999
Q ss_pred HHHHHHHHHHc
Q 023915 84 AYRTMVDMHRK 94 (275)
Q Consensus 84 a~~~~~~m~~~ 94 (275)
|...|+...+.
T Consensus 105 A~~~~~~al~~ 115 (142)
T 2xcb_A 105 AESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.14 E-value=2.6e-05 Score=60.58 Aligned_cols=123 Identities=8% Similarity=-0.002 Sum_probs=61.7
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHccCCH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMY 81 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~~~~ 81 (275)
.+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...... .|. ...+..+-.++.+.|++
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 3455566666666666555433 222233334445556666666666665332211 110 12444555556666666
Q ss_pred HHHHHHHHHHHHcCCCCC--HHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 82 ILAYRTMVDMHRKGHQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
++|+..|++.......|. .......-.++.+.|+.++|..+|+++...
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666553222132 223444555555566666666666665543
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.13 E-value=0.00013 Score=49.54 Aligned_cols=94 Identities=9% Similarity=-0.133 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc------HHhHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC------KALHE 139 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~ 139 (275)
.++..+-..+.+.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|++.++.......... ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356677788888899999999998887753 33466788888888888888888888887654322111 12333
Q ss_pred HHHHHHHhccchHHHHHHHHH
Q 023915 140 KILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~ 160 (275)
.+-..+...|++++|++.|++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344444445555555555544
No 164
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.12 E-value=0.00011 Score=51.42 Aligned_cols=93 Identities=11% Similarity=-0.089 Sum_probs=52.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
.+..+...+.+.|++++|...|+...... +.+...|..+-.+|.+.|++++|...|+......+. +...+..+-.++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 44555566666677777777776666542 234555666666666666666666666665543221 2223444445555
Q ss_pred hccchHHHHHHHHHh
Q 023915 147 SGKLLKDAYVVVKDN 161 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~ 161 (275)
..|++++|...|++.
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555543
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=1.6e-05 Score=67.23 Aligned_cols=118 Identities=11% Similarity=0.029 Sum_probs=92.5
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|.+.|++..+.... +...|..+-.++.+.|++++|++.+++..+. .| +...|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3567889999999999999887443 6789999999999999999999999999884 35 456788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHH--HhccCCHHHHHHHHH
Q 023915 82 ILAYRTMVDMHRKGHQPEEELCSSLIFH--LGKMRAHSEALSVYN 124 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 124 (275)
++|...|++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998763 2223345555444 888899999999988
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=4.8e-05 Score=54.12 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=78.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~ 81 (275)
..+.+.|++++|.+.|+...+.... +...|..+-.+|.+.|++++|+..|++..+. .|+ ...|..+...+.+.|++
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCH
Confidence 3577899999999999999987544 7889999999999999999999999999874 354 67788999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 023915 82 ILAYRTMVDMHRKG 95 (275)
Q Consensus 82 ~~a~~~~~~m~~~g 95 (275)
+.|...|++..+..
T Consensus 96 ~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 96 KGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988753
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=6.5e-05 Score=55.27 Aligned_cols=121 Identities=8% Similarity=0.018 Sum_probs=89.5
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCc---------------HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYD---------------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 68 (275)
.+.+.|++++|...|+........-. ...|..+-.++.+.|++++|+..++...+.. +.+...+
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 125 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKAL 125 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHH
Confidence 56788999999999999987533211 2788889999999999999999999998742 2356678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHH-HHHHHH
Q 023915 69 HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL-SVYNML 126 (275)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m 126 (275)
..+..++...|+++.|...|++..+.. +-+...+..+..++...++.+++. ..+..+
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999998763 334556777777777666666555 334433
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=2.9e-05 Score=52.37 Aligned_cols=95 Identities=8% Similarity=-0.022 Sum_probs=74.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (275)
.+..+...+.+.|++++|+..|++..+. .| +...|..+-..+.+.|+++.|+..|++..+.. +-+...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4556667788889999999999888873 35 45667788888889999999999999888763 33566788888889
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 023915 111 GKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~ 129 (275)
.+.|++++|...++.....
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=0.00012 Score=49.98 Aligned_cols=63 Identities=10% Similarity=-0.065 Sum_probs=33.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
+...+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|...++...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555555556666666666666555442 2234455555555555555555555555444
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=6.7e-05 Score=50.57 Aligned_cols=95 Identities=14% Similarity=-0.058 Sum_probs=67.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
.+..+...+.+.|+++.|...|++..+.. +-+...|..+-.++.+.|++++|...|+......+. +...+..+-..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34555666777888888888888877653 335567777777788888888888888876654333 2346667777777
Q ss_pred hccchHHHHHHHHHhhc
Q 023915 147 SGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~ 163 (275)
..|++++|...+++...
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877654
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=0.00017 Score=48.61 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=49.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE---EELCSSLIF 108 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~ 108 (275)
+...+.+.|++++|.+.|+...+.. |+. ..+..+...+.+.|+++.|...|+...+.. +.+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3344555666666666666655422 332 244555556666666666666666665542 111 344555556
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 023915 109 HLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~ 129 (275)
++.+.|++++|...|+.....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=2.3e-05 Score=52.45 Aligned_cols=83 Identities=10% Similarity=-0.068 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 023915 44 GDMESVMHVMRKLDELA--ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (275)
Q Consensus 44 g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (275)
|++++|+..|++..+.+ -+-+...+..+...+.+.|++++|...|++..+.. +-+..++..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555554444422 11122334444445555555555555555544432 1223344445555555555555555
Q ss_pred HHHHHH
Q 023915 122 VYNMLR 127 (275)
Q Consensus 122 ~~~~m~ 127 (275)
.++...
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=0.00015 Score=48.93 Aligned_cols=87 Identities=20% Similarity=0.128 Sum_probs=46.6
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcH---HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHc
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCK 77 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~ 77 (275)
+.+.|++++|.+.|+......+. +. ..+..+..++.+.|++++|...|+...+.. |+ ...+..+...+.+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHH
Confidence 44556666666666665554322 11 345555555556666666666666555422 33 2334455555556
Q ss_pred cCCHHHHHHHHHHHHHc
Q 023915 78 EKMYILAYRTMVDMHRK 94 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~ 94 (275)
.|+++.|...|+...+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666665543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=0.00013 Score=61.58 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=92.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
..+-..+.+.|++++|++.|++..+. .|+ ...|..+..++.+.|++++|...+++..+.. +-+..++..+-.+|.+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33444567889999999999999874 454 6788999999999999999999999999863 3456789999999999
Q ss_pred cCCHHHHHHHHHHHHhccccccHHhHHHHHHH--HHhccchHHHHHHHH
Q 023915 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHI--LISGKLLKDAYVVVK 159 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 159 (275)
.|++++|.+.|++........ ...+..+-.+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999887653322 2234444334 788899999999998
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=0.00016 Score=60.73 Aligned_cols=122 Identities=12% Similarity=-0.019 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----------------YNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
...|..+-..+.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|+++.|+..+++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 446777777788888888888888877762 233 35666677777777777777777777766
Q ss_pred cCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHH
Q 023915 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (275)
Q Consensus 94 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (275)
.. +.+...|..+-.+|.+.|++++|...|+........ +...+..+-..+...++.+++.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 53 334556666777777777777777777766544222 2234555555555555555543
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=0.00062 Score=46.85 Aligned_cols=61 Identities=10% Similarity=-0.145 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE----EELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 65 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
...+..+...+.+.|+++.|...|++..+. .|+ ...+..+...|.+.|++++|...++...
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 344555555556666666666666665543 233 3344444555555555555555555443
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=0.00021 Score=60.37 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=13.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
+++.|...|...|++++|..++++.+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=2.6e-05 Score=52.17 Aligned_cols=103 Identities=9% Similarity=-0.051 Sum_probs=75.4
Q ss_pred hcCcHHHHHHHHHHHHhcCC--CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~ 83 (275)
..|++++|...|+...+.+. +-+...|..+-.++.+.|++++|++.|++..+.. |+ ...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 46889999999999987641 2255788999999999999999999999998743 43 5678888999999999999
Q ss_pred HHHHHHHHHHcC-CCCCHHhHHHHHHHHh
Q 023915 84 AYRTMVDMHRKG-HQPEEELCSSLIFHLG 111 (275)
Q Consensus 84 a~~~~~~m~~~g-~~~~~~~~~~li~~~~ 111 (275)
|...+++..+.. -.|+...|...+..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999988653 1233334444444443
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=0.00011 Score=59.12 Aligned_cols=146 Identities=9% Similarity=-0.071 Sum_probs=60.5
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
...+..+-..+.+.|++++|+..|++... +.|+... +...++.+.+...+. ...|..+-.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34466667777788888888888887665 2354331 111222222211110 1245555555
Q ss_pred HhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC-CC-hhHHHHHHHH-HHhcCChhHH
Q 023915 110 LGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSES-IS-HPAIKKFASA-FVRLGNINLV 186 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~li~~-~~~~~~~~~a 186 (275)
|.+.|++++|...++....... .+...|..+-.+|...|++++|...|++.... +. +..+..+... ....+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543322 12334555555666666666666666655431 11 1122222222 2223445555
Q ss_pred HHHHHHHHH
Q 023915 187 NDVMKAIHA 195 (275)
Q Consensus 187 ~~~~~~m~~ 195 (275)
...|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 566655544
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00036 Score=49.38 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=77.4
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhc-------CC---------CC-ChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-------AI---------SP-DYNTFHILIKYFCKEKMYILAYRTMVDM 91 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m 91 (275)
....+...-..+.+.|++++|++.|.+..+. .- .| +...|..+..+|.+.|+++.|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777778888899999999998887763 00 12 2356778888888999999999999988
Q ss_pred HHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 92 HRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 92 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
.+.. +.+...|..+-.+|...|++++|...|+......
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8763 4456788888888999999999999888876543
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00042 Score=56.48 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=77.3
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhc--------------CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDEL--------------AISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
..+..+-..+.+.|++++|++.|++..+. ...| +..+|..+..++.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677777888889999998888887651 0122 23566677777777777777777777777542
Q ss_pred CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHH
Q 023915 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (275)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (275)
+-+...+..+-.+|.+.|++++|...|+........ +...+..+-..+...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 234556777777777777777777777766544222 233444444444444444443
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.0005 Score=58.09 Aligned_cols=122 Identities=8% Similarity=-0.043 Sum_probs=87.4
Q ss_pred HHhccCCHHHHHHHHHHHHhc-------cccccHHhHHHHHHHHHhccchHHHHHHHHHhhc------CCChh----HHH
Q 023915 109 HLGKMRAHSEALSVYNMLRYS-------KRSMCKALHEKILHILISGKLLKDAYVVVKDNSE------SISHP----AIK 171 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~----~~~ 171 (275)
.+...|++++|..++++.... .-+....+++.+...|...|++++|..++++... .+..| +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999998876542 1222456788999999999999999998887543 22222 678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH---cCCCCCh----hhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 172 KFASAFVRLGNINLVNDVMKAIHA---TGYRIDQ----GIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 172 ~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~----~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
.|...|...|++++|+.++++..+ .-+-||. .+.+.+-.++. ..+.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~-e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM-ELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 889999999999999999987544 1122332 23444444443 67888999999998865
No 183
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.81 E-value=0.0081 Score=48.18 Aligned_cols=219 Identities=9% Similarity=0.011 Sum_probs=133.3
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHcc-C-CHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPD-YNTFHILIKYFCKE-K-MYIL 83 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~-~-~~~~ 83 (275)
.+..++|+++++.+...++. +..+||.--..+...| .+++++++++.+.... |. ..+|+.--..+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34456788888888887555 6667777666777777 5889999998888733 43 44566555555555 5 7888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHH--------HHHHHHHHHHhccccccHHhHHHHHHHHHhccc-----
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS--------EALSVYNMLRYSKRSMCKALHEKILHILISGKL----- 150 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----- 150 (275)
++.+++.+.+.. +-|..+|+.-...+.+.|..+ ++++.++.+....+. +...|+..-..+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 888888887643 445667766555555555555 788888877765443 33356665555555554
Q ss_pred --hHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHcC-----CCCC
Q 023915 151 --LKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNI--------------------NLVNDVMKAIHATG-----YRID 201 (275)
Q Consensus 151 --~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~m~~~g-----~~p~ 201 (275)
++++++.+++... ..+...++-+-..+.+.|+. .........+...+ -.+.
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 5777777777554 23333454444444444432 12222222222211 0245
Q ss_pred hhhHHHHHHHHHHhchhHHHHHHHHHHHhhC
Q 023915 202 QGIFHIAIARYIAEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 202 ~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~ 232 (275)
......|.+.|. ..|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~-~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFI-EQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Confidence 566777777776 567778888888888543
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00099 Score=45.88 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=79.5
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----c
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----E 78 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~ 78 (275)
.+..-.+++++|.+.|+...+.| .|+.. |-..|...+.+++|++.|++..+.| +...+..|-..|.. .
T Consensus 3 ~G~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 3 GGGTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred CCcCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCC
Confidence 44555677888888888888776 22333 5555666667777888888877764 44556666666666 6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc----cCCHHHHHHHHHHHHhccc
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKR 131 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 131 (275)
+++++|...|++..+.| +...+..|-..|.. .++.++|.+.|+.....|.
T Consensus 75 ~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 78888888888877664 34456666666666 6777777777776665543
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00039 Score=49.19 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=77.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhc--------CC---------CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-Ch
Q 023915 4 AFCRGGCFEEAKQLAGDFEAK--------YD---------KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DY 65 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~--------g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~ 65 (275)
.+.+.|++++|...|...... .. ..+...|..+-.+|.+.|++++|+..++...+. .| +.
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~ 97 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNE 97 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcch
Confidence 567889999999999988765 10 113468899999999999999999999999874 35 46
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE 101 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (275)
..|..+..++...|+++.|...|+...+. .|+..
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 67889999999999999999999998876 46543
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.74 E-value=0.00071 Score=47.64 Aligned_cols=96 Identities=16% Similarity=0.054 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHc---
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-------------YNTFHILIKYFCKEKMYILAYRTMVDMHRK--- 94 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--- 94 (275)
..+...-..+.+.|++++|++.|++..+ +.|+ ...|..+-.++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3455666677788899999998888876 3344 227778888888888888888888887764
Q ss_pred --CCCCCH-HhH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 95 --GHQPEE-ELC----SSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 95 --g~~~~~-~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
.+.|+. ..| ...-.++...|++++|+..|+....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 124543 466 7777777788888888888876653
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.0015 Score=54.72 Aligned_cols=127 Identities=6% Similarity=-0.094 Sum_probs=75.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhccccc--------------cHHhHHHHHHHHHhccchHHHHHHHHHhhc--CC
Q 023915 102 LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM--------------CKALHEKILHILISGKLLKDAYVVVKDNSE--SI 165 (275)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~ 165 (275)
.+..+-..|.+.|++++|...|+......... ....|..+-.+|.+.|++++|+..+++... ..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 34444555555555555555555544322111 134667777777888888888888887655 23
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHhchhHHHHH-HHHHHHhh
Q 023915 166 SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRID-QGIFHIAIARYIAEREKKELLL-KLLEWMTG 231 (275)
Q Consensus 166 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~~~~~~~a~-~l~~~m~~ 231 (275)
....+..+..+|...|++++|...|+...+. .|+ ...+..+-..+. ..++.+++. .++..|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~-~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQK-KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3446777788888888888888888887764 353 345555555553 555555544 45555543
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.68 E-value=0.0022 Score=52.14 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=57.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhc---------------cccccHHhHHHHHHHHHhccchHHHHHHHHHhhcC--
Q 023915 102 LCSSLIFHLGKMRAHSEALSVYNMLRYS---------------KRSMCKALHEKILHILISGKLLKDAYVVVKDNSES-- 164 (275)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 164 (275)
.+..+-..+.+.|++++|...|+..... ..+.....|..+-.+|.+.|++++|+..+++....
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555566666677777777777665531 11122345666666666777777777777765542
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 023915 165 ISHPAIKKFASAFVRLGNINLVNDVMKAIHAT 196 (275)
Q Consensus 165 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 196 (275)
.....+..+..+|...|++++|...|+...+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22335566666777777777777777766654
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0012 Score=45.52 Aligned_cols=111 Identities=8% Similarity=-0.114 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHh----ccchHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLLKDA 154 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a 154 (275)
+++++|...|++..+.| .|+.. +-..|...+.+++|.+.|+.....+. ...+..+-..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHcCCCCCccHHHH
Confidence 34555555555555554 22222 44444444555555555555444322 1233333334444 4555555
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 023915 155 YVVVKDNSESISHPAIKKFASAFVR----LGNINLVNDVMKAIHATG 197 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 197 (275)
.++|++..+.+++.....+-..|.. .++.++|...|+.-.+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555555555555555555555 555566666555555544
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00017 Score=57.95 Aligned_cols=139 Identities=12% Similarity=-0.017 Sum_probs=64.7
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL 83 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 83 (275)
.+.+.|++++|...|+..... .|+... +...++.+++...+. ...|..+..++.+.|+++.
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~~~ 248 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRYDE 248 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCHHH
Confidence 567889999999999998765 334321 122333333332221 1256666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHH-HHhccchHHHHHHHHHhh
Q 023915 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI-LISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~ 162 (275)
|+..+++.++.. +.+...|..+-.+|...|++++|...|+........ +...+..+-.. ....+..+.+...|+.+.
T Consensus 249 A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 249 AIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777766542 234556666777777777777777777765433221 12223333222 123344555666666554
Q ss_pred c
Q 023915 163 E 163 (275)
Q Consensus 163 ~ 163 (275)
.
T Consensus 327 ~ 327 (338)
T 2if4_A 327 K 327 (338)
T ss_dssp -
T ss_pred C
Confidence 3
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.65 E-value=0.0085 Score=50.74 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVD 90 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 90 (275)
.+.+..+|+......+ .+...|-..+.-+.+.|+++.|.++|++.... |....... .|+...+.+. +++.
T Consensus 195 ~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHH
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHH
Confidence 4557778888877543 35777888888888999999999999999986 55443222 2222211121 1333
Q ss_pred HHHcC---------CCC---CHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHH--HHHHHHhccchHHHHH
Q 023915 91 MHRKG---------HQP---EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK--ILHILISGKLLKDAYV 156 (275)
Q Consensus 91 m~~~g---------~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~ 156 (275)
+.+.- ..+ ....|...+....+.++.+.|..+|+.. ... ..+...|.. .+... ..++.+.|..
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ 341 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYN 341 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHH
Confidence 32211 011 1245666777777788899999999988 322 223334432 22222 2336999999
Q ss_pred HHHHhhc-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 157 VVKDNSE-SIS-HPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 157 ~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
+|+.... .+. +..+...+......|+.+.|..+|+... .....|...+.- =...|+.+.+.++++++..
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f-E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY-EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH-HHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 9998765 233 3345667777788999999999998862 234556666643 3356888888888887753
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.56 E-value=0.0012 Score=46.44 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=79.4
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCC------c-----HHhHHHHHHHHHccCCHHHHHHHHHHHhhc-----CCCCCh-h
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKY------D-----VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-----AISPDY-N 66 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~-~ 66 (275)
.+.+.|++++|++.|+...+..+.. + ...|+.+-.++.+.|++++|+..++...+. .+.|+. .
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~ 99 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 99 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence 4667899999999999998864331 2 238999999999999999999999998873 126764 4
Q ss_pred hH----HHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHhHH
Q 023915 67 TF----HILIKYFCKEKMYILAYRTMVDMHR-----KGHQPEEELCS 104 (275)
Q Consensus 67 t~----~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~ 104 (275)
.| ...-.++...|++++|+..|++..+ .|+.+......
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 67 8888899999999999999999875 35555444333
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00023 Score=46.50 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=33.1
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
+...|..+-..+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445555555555555555555555555421 11334444555555555555555555555543
No 194
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.44 E-value=0.029 Score=44.68 Aligned_cols=217 Identities=9% Similarity=-0.010 Sum_probs=120.3
Q ss_pred cCcHH-HHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCC----------HHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 023915 8 GGCFE-EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD----------MESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (275)
Q Consensus 8 ~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 76 (275)
.|.+. +|+++++.+...++. +..+||.=-..+...+. +++++.+++.+.... +-+..+|+.---.+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34443 678888888766443 44455533333322222 567778887777632 124455665555555
Q ss_pred ccC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC-HHHHHHHHHHHHhccccccHHhHHHHHHHHHhc-----
Q 023915 77 KEK--MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-HSEALSVYNMLRYSKRSMCKALHEKILHILISG----- 148 (275)
Q Consensus 77 ~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 148 (275)
+.+ +++.++.+++.+.+.. +-|..+|+.--..+.+.|. .+++++.++.+....+.- ...|+..-..+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N-~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhhhccc
Confidence 666 4788888888888754 4566677766666666676 578888888777654432 23444433333332
Q ss_pred ---------cchHHHHHHHHHhhc--CCChhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCChhhHH
Q 023915 149 ---------KLLKDAYVVVKDNSE--SISHPAIKKFASAFVRL-----------GNINLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 149 ---------~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
+.++++++.+.+... ..+...++=+--.+... +.++++.+.++++.+. .||. .|.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chH
Confidence 456777777777554 22333333222222222 3467777777777764 3554 232
Q ss_pred --HHHHH--HHHhchhHHHHHHHHHHHhh
Q 023915 207 --IAIAR--YIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 207 --~li~~--~~~~~~~~~~a~~l~~~m~~ 231 (275)
+++.. .....+..+++...+.++.+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 11111 01123455566666666654
No 195
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.40 E-value=0.035 Score=44.54 Aligned_cols=195 Identities=11% Similarity=0.005 Sum_probs=131.6
Q ss_pred hcC-cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHcc-C-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH-
Q 023915 7 RGG-CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRT-G-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI- 82 (275)
Q Consensus 7 ~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~- 82 (275)
..| ++++++++++.+....++ +..+|+.--..+.+. + ++++++++++.+.+.. +-|...|+.-.-.+.+.+.++
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 345 599999999999988666 788888777777776 6 8899999999998743 235566665554555555555
Q ss_pred -------HHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC-------HHHHHHHHHHHHhccccccHHhHHHHHHHHHhc
Q 023915 83 -------LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-------HSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (275)
Q Consensus 83 -------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 148 (275)
++++.++++.+.. +-|..+|+..-..+.+.++ ++++++.++......+. +...|+-+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 8999999998864 4577788888888877776 67888888776654333 344666655555555
Q ss_pred cch--------------------HHHHHHHHHhhcC--------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 023915 149 KLL--------------------KDAYVVVKDNSES--------ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRI 200 (275)
Q Consensus 149 ~~~--------------------~~a~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 200 (275)
|+. ....+...++... .++.....+...|...|+.++|.++++.+.+. ..|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dp 334 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQ 334 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCG
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hCh
Confidence 543 2333333333332 22335677889999999999999999998753 345
Q ss_pred ChhhHH
Q 023915 201 DQGIFH 206 (275)
Q Consensus 201 ~~~~y~ 206 (275)
-..-|.
T Consensus 335 ir~~yw 340 (349)
T 3q7a_A 335 MRAGYW 340 (349)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 444444
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.39 E-value=0.0029 Score=41.65 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 14 AKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
|.+.|+...+.... +...+..+-..+...|++++|+..|++..+.. +.+...|..+...+.+.|+++.|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444443222 44455555555555555555555555554421 1123344445555555555555555555544
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.001 Score=43.28 Aligned_cols=98 Identities=10% Similarity=-0.019 Sum_probs=66.1
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccc-c----HHh
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-C----KAL 137 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~ 137 (275)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+-.++.+.|++++|...++......... + ...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 345567777778888888888888888877653 3356677778888888888888888888776543322 1 334
Q ss_pred HHHHHHHHHhccchHHHHHHHHHh
Q 023915 138 HEKILHILISGKLLKDAYVVVKDN 161 (275)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~ 161 (275)
+..+-.++...|+.+.|...++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 555566666666666665555443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.0037 Score=38.80 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=47.7
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+...+..+-..+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +-+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34556666667777777777777777766532 1234456666667777777777777777766542 223334444444
Q ss_pred HH
Q 023915 109 HL 110 (275)
Q Consensus 109 ~~ 110 (275)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.37 E-value=0.001 Score=46.79 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=75.0
Q ss_pred hhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCH----------HHHHHHHHHHhhcCCCCCh-hhHHHHHH
Q 023915 5 FCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM----------ESVMHVMRKLDELAISPDY-NTFHILIK 73 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~-~t~~~li~ 73 (275)
..+.+.+++|.+.++...+..+. +...|+.+-.++...+++ ++|+..|++..+ +.|+. .+|..+-.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 45677899999999999887655 778888888888887765 588888888877 55654 57888888
Q ss_pred HHHccC-----------CHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 74 YFCKEK-----------MYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 74 ~~~~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
+|...| ++++|.+.|++..+. .|+...|...+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 888764 788888888888775 576665554444
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0038 Score=41.00 Aligned_cols=80 Identities=8% Similarity=-0.064 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 48 SVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 48 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
.|++.|++..+.. +.+...+..+...+.+.|+++.|...|++..+.. +.+...|..+..+|.+.|++++|...|+...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666777766532 2345677888888999999999999999988764 3346688888889999999999999988776
Q ss_pred hc
Q 023915 128 YS 129 (275)
Q Consensus 128 ~~ 129 (275)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 201
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.23 E-value=0.029 Score=47.45 Aligned_cols=177 Identities=12% Similarity=0.041 Sum_probs=114.2
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhc---------CCCC---ChhhHHHH
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL---------AISP---DYNTFHIL 71 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p---~~~t~~~l 71 (275)
-+.+.|+++.|.++|+..... +.+...|. .|+...+.++. ++.+.+. +..+ ....|...
T Consensus 222 ~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 222 YLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 345679999999999999988 22333332 22222122222 2222221 0011 12456677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 72 IKYFCKEKMYILAYRTMVDMHRKGHQPEEELCS--SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
+....+.++++.|..+|+.. ... ..+...|. +.+.... .++.+.|..+|+........ ++..+...++-....|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcC
Confidence 77777788999999999998 321 12333443 2333222 33699999999988764322 2345666777778899
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 150 LLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
+.+.|..+|+... .....+...+..=...|+.+.+..+++...+
T Consensus 369 ~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 DEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999974 2456788888877888999999998888764
No 202
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.16 E-value=0.007 Score=54.29 Aligned_cols=101 Identities=8% Similarity=0.055 Sum_probs=69.7
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHH
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (275)
.....|+++.|+++.+.+ .+...|..+...+.+.++++.|.++|.++.+ |..+...+...|+.+.
T Consensus 661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence 345689999999986554 4667899999999999999999999998753 4556666666777777
Q ss_pred HHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 119 ALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 119 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
..++-+.....+. ++.....|...|++++|.+++.+
T Consensus 726 ~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 726 LVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 6655554443321 33344445556666666555544
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.12 E-value=0.0062 Score=39.03 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 92 (275)
...+..+-.++.+.|++++|++.|++..+.. |+ ...|..+..+|.+.|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444455555555555555555544421 22 2334444444555555555555444443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.02 E-value=0.011 Score=36.50 Aligned_cols=64 Identities=16% Similarity=-0.022 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 65 YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 65 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456667777788888888888888877653 334566777777778888888888887776654
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.96 E-value=0.0055 Score=50.88 Aligned_cols=88 Identities=6% Similarity=-0.122 Sum_probs=66.5
Q ss_pred HccCCHHHHHHHHHHHhhc--C-CCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CCCCH-HhHHHH
Q 023915 41 CRTGDMESVMHVMRKLDEL--A-ISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHR-----KG-HQPEE-ELCSSL 106 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~--g-~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~~~~-~~~~~l 106 (275)
.+.|++++|++++++..+. . +-|+ ..+++.|...|...|++++|+.++++.++ .| -.|+. .+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3568889999999888753 1 2233 35788999999999999999999998764 22 23433 478889
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 023915 107 IFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~ 128 (275)
-..|...|++++|..++++...
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999998887653
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.0052 Score=39.40 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=60.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-ccccHHhHHHHH
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSMCKALHEKIL 142 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li 142 (275)
+...+..+...+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...|+...... ..++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45567788888899999999999999988764 3345688888899999999999999998776542 233444444444
Q ss_pred HHHHhcc
Q 023915 143 HILISGK 149 (275)
Q Consensus 143 ~~~~~~~ 149 (275)
..+...+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 4444433
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0036 Score=51.99 Aligned_cols=85 Identities=4% Similarity=-0.118 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHhhc---CCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cC-CCCCH-HhHHHHHHH
Q 023915 44 GDMESVMHVMRKLDEL---AISPD----YNTFHILIKYFCKEKMYILAYRTMVDMHR-----KG-HQPEE-ELCSSLIFH 109 (275)
Q Consensus 44 g~~~~a~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~~~~-~~~~~li~~ 109 (275)
|++++|+.++++..+. -+-|+ ..+++.|..+|...|++++|+.++++.++ .| -.|++ .+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6778888887776542 12233 35788888888888888888888888763 23 23443 478888888
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 023915 110 LGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~ 128 (275)
|...|++++|..++++...
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888998888888886653
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.86 E-value=0.09 Score=45.31 Aligned_cols=168 Identities=11% Similarity=-0.000 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCC----------HHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHcc
Q 023915 10 CFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD----------MESVMHVMRKLDELAISP-DYNTFHILIKYFCKE 78 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 78 (275)
.-++|++.++.+....+. +..+|+.--.++...|+ ++++++.++.+.+.. | +..+|+.---.+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 346778888888887555 56677766556666666 899999999998743 4 455677777777788
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc-------
Q 023915 79 K--MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISG------- 148 (275)
Q Consensus 79 ~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------- 148 (275)
+ ++++++..++.+.+.. +-|..+|+.--..+.+.| ..+++++.++.+....+. +...|+..-..+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 7799999999999875 456778888777777888 889999998888765443 334565555444442
Q ss_pred -------cchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCC
Q 023915 149 -------KLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGN 182 (275)
Q Consensus 149 -------~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~ 182 (275)
+.++++++.+.+... ..+...|+-.-..+...++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 567888888887654 3333455555555555554
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.0099 Score=49.36 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCh-hhHHHHHHHHHHhchhHHHHHHHHHHH
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHAT-----G-YRIDQ-GIFHIAIARYIAEREKKELLLKLLEWM 229 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~y~~li~~~~~~~~~~~~a~~l~~~m 229 (275)
+++.+..+|...|++++|+.++++..+- | -.|+. .+|+.|-..|. ..|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM-GLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hccCHHHHHHHHHHH
Confidence 3444555555555555555555443321 1 11211 24444544443 445555555555543
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.0075 Score=54.07 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=22.4
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 023915 76 CKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 126 (275)
...|+++.|.++.+. ..+...|..+-..+.+.|+++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555544322 123345555555555555555555555544
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.78 E-value=0.019 Score=47.59 Aligned_cols=88 Identities=8% Similarity=-0.131 Sum_probs=48.3
Q ss_pred HHHHHhccchHHHHHHHHHhhcC------CChh----HHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCh-hh
Q 023915 142 LHILISGKLLKDAYVVVKDNSES------ISHP----AIKKFASAFVRLGNINLVNDVMKAIHAT-----G-YRIDQ-GI 204 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~------~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~ 204 (275)
+..+...|++++|+.++++.... +..+ +++.+..+|...|++++|+.++++...- | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33444556666666666654431 1111 4566666677777777777766654431 1 11222 35
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 205 FHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 205 y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
++.|-..|. ..|++++|..++++..
T Consensus 374 l~nLa~~~~-~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQL-HQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence 666666664 5566676776666543
No 212
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.70 E-value=0.17 Score=40.32 Aligned_cols=195 Identities=7% Similarity=-0.050 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC-HHHHHHH
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-YILAYRT 87 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~~ 87 (275)
+++++.+++.+....++ +..+|+.--..+.+.+ .+++++++++.+.+.. +-|...|+.---.+.+.|. ++.+++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 68899999999987665 8888887777777777 4899999999998853 2456677766666777787 5899999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhcc--------------CCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc-----
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLGKM--------------RAHSEALSVYNMLRYSKRSMCKALHEKILHILISG----- 148 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 148 (275)
+..+.+.. +-|..+|+..-..+.+. +.++++++.+.......+. +...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 99999864 45666777655555443 4577788888876654332 334555444444443
Q ss_pred ------cchHHHHHHHHHhhcCCChhHHHH-----HHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 023915 149 ------KLLKDAYVVVKDNSESISHPAIKK-----FASAFVRLGNINLVNDVMKAIHATGYRIDQG-IFHIAIAR 211 (275)
Q Consensus 149 ------~~~~~a~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~ 211 (275)
+.++++++.+.++.+.-+...+.. +.......+..+++...+..+.+. .|... -|.-+-..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHHH
Confidence 457888888888776332223332 222223456677888888888774 35443 34444443
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.035 Score=38.55 Aligned_cols=90 Identities=11% Similarity=0.010 Sum_probs=63.3
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC---CHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHccCC
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVMHVMRKLDELAISP--DYNTFHILIKYFCKEKM 80 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~~~ 80 (275)
.....+..+.+-|.+....|. ++..+-..+-.++++.+ +.++++.+|++..+.+ .| +...+-.+--++.+.|+
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 344556677777777666655 57777777777888877 5668888888887754 34 23344455567788888
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 023915 81 YILAYRTMVDMHRKGHQPE 99 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~ 99 (275)
+++|.+.++.+.+. .|+
T Consensus 87 Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 87 YEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhc--CCC
Confidence 88888888888875 564
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.58 E-value=0.017 Score=36.54 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCC-hh-hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 39 AYCRTGDMESVMHVMRKLDELAISPD-YN-TFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 39 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
.+.+.|++++|++.|++..+. .|+ .. .+..+...+.+.|++++|...|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555554442 122 22 344444444455555555555555444
No 215
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.56 E-value=0.32 Score=41.89 Aligned_cols=168 Identities=7% Similarity=-0.001 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 44 GDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKM----------YILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 44 g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
...++|++.++++.. +.|+.. .|+.--..+.+.++ +++++..++.+.+.. +-+..+|+.--..+.+
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 345688999999887 447654 35544444445555 889999999998754 3456688887777788
Q ss_pred cC--CHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc-chHHHHHHHHHhhcCC--ChhHHHHHHHHHHhc-------
Q 023915 113 MR--AHSEALSVYNMLRYSKRSMCKALHEKILHILISGK-LLKDAYVVVKDNSESI--SHPAIKKFASAFVRL------- 180 (275)
Q Consensus 113 ~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~------- 180 (275)
.| +++++++.++.+.+.... +-..|+.--..+.+.| .++++++.+.++.+.. +...|+-....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 88 679999999988876444 3346666666667777 7888888888876622 223454444443332
Q ss_pred -------CChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHhchh
Q 023915 181 -------GNINLVNDVMKAIHATGYRIDQ-GIFHIAIARYIAEREK 218 (275)
Q Consensus 181 -------~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~~~~ 218 (275)
+.++++.+.++..... .|+. ..|.-+- ....+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~-~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHR-WLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHH-HHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHH-HHHhcCCC
Confidence 4567777777776664 3544 3444333 33334444
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.51 E-value=0.015 Score=36.73 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=50.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHH-hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVV-LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 65 (275)
..+.+.|++++|.+.|+...+.... +.. .|..+-.++...|++++|.+.|++..+. .|+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 68 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDS 68 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc
Confidence 3567889999999999999987543 566 8899999999999999999999999874 3543
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.37 E-value=0.042 Score=38.55 Aligned_cols=38 Identities=5% Similarity=-0.176 Sum_probs=17.1
Q ss_pred ccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 112 KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
+.+.+++|.+.++......+. +...|..+-.++...++
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 344555566666555433222 22334444444444443
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.19 Score=35.80 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=24.4
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
.+.|+++.|.++.+++. +...|..|-....+.|+++-|.+.|.....
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 34555555555544431 444555555555555555555555555443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.09 E-value=0.2 Score=40.42 Aligned_cols=142 Identities=7% Similarity=-0.109 Sum_probs=91.0
Q ss_pred CCCcHHhHHHHHHHHHc--cC---CHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHH----ccC-CHHHHHH---HHHHH
Q 023915 26 DKYDVVLLNSMLCAYCR--TG---DMESVMHVMRKLDELAISPDY-NTFHILIKYFC----KEK-MYILAYR---TMVDM 91 (275)
Q Consensus 26 ~~p~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~----~~~-~~~~a~~---~~~~m 91 (275)
.+.+...|...+.+... .+ ...+|.++|++..+ ..|+- ..|..+.-+|. ... ....... .+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 35578888888876543 23 35789999999987 45763 23332222222 111 1112221 22221
Q ss_pred HH-cCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChhH
Q 023915 92 HR-KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SISHPA 169 (275)
Q Consensus 92 ~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 169 (275)
.. ...+.+..+|..+...+...|+++.|...+++....+ |+...|..+-..+.-.|++++|.+.+.+... .+..++
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 11 1225567788887777777899999999999888765 5666666777788889999999999987655 666666
Q ss_pred HH
Q 023915 170 IK 171 (275)
Q Consensus 170 ~~ 171 (275)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.90 E-value=0.23 Score=33.72 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCC
Q 023915 170 IKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGY 234 (275)
Q Consensus 170 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~ 234 (275)
++..+..+...|+-+...+++..+.. +-+|++...-.+-.+|- +.|...++.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~-Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALR-RVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHH-HhcchhhHHHHHHHHHHhhh
Confidence 34444444555555555555444322 22344444444444442 44444455555555555444
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.86 E-value=0.55 Score=37.85 Aligned_cols=143 Identities=6% Similarity=-0.045 Sum_probs=93.3
Q ss_pred CCCChhhHHHHHHHHHc--c---CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhc---cC--CHHHHHH---HHHHH
Q 023915 61 ISPDYNTFHILIKYFCK--E---KMYILAYRTMVDMHRKGHQPE-EELCSSLIFHLGK---MR--AHSEALS---VYNML 126 (275)
Q Consensus 61 ~~p~~~t~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~---~g--~~~~a~~---~~~~m 126 (275)
.+.+...|...+++... . .+..+|..+|++..+. .|+ ...|..+..+|.- .+ ....... .++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44566778877766543 2 3457899999999876 565 3455544444421 11 1112221 22221
Q ss_pred Hh-ccccccHHhHHHHHHHHHhccchHHHHHHHHHhhc-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 023915 127 RY-SKRSMCKALHEKILHILISGKLLKDAYVVVKDNSE-SISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI 204 (275)
Q Consensus 127 ~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 204 (275)
.. ...+.++..|..+-..+...|++++|...+++... .++...|..+-..+.-.|++++|.+.+...... .|...+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 11 23355666777776677778999999999999776 444445667778899999999999999887775 477777
Q ss_pred HHH
Q 023915 205 FHI 207 (275)
Q Consensus 205 y~~ 207 (275)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.51 E-value=0.17 Score=32.51 Aligned_cols=64 Identities=6% Similarity=-0.181 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhcC------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELA------ISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
...+..|-..+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3334444445555555555555554443320 112233344444444444444444444444443
No 223
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.9 Score=37.78 Aligned_cols=243 Identities=10% Similarity=0.004 Sum_probs=142.6
Q ss_pred cCcHHHHHHHHHHHHhc-----CCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh-cCCCCChhh--HHHHHHHHHccC
Q 023915 8 GGCFEEAKQLAGDFEAK-----YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYNT--FHILIKYFCKEK 79 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t--~~~li~~~~~~~ 79 (275)
.|+++.|++-+..+.+. +..-+......++..|...++++...+.+..+.. +|..+...+ -+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37888999888777642 2344567788999999999999999887776654 454443333 123333333333
Q ss_pred CHHHH--HHHHHHHHH--cC-CCC---CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc--cc---cccHHhHHHHHHHHH
Q 023915 80 MYILA--YRTMVDMHR--KG-HQP---EEELCSSLIFHLGKMRAHSEALSVYNMLRYS--KR---SMCKALHEKILHILI 146 (275)
Q Consensus 80 ~~~~a--~~~~~~m~~--~g-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~~~~~~~~~li~~~~ 146 (275)
..+.. ..+.+.... .| +-. .......|...|...|++.+|..++..+... +. .--...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33321 122211110 11 111 1123456788889999999999999988643 21 112346777888999
Q ss_pred hccchHHHHHHHHHhhc----CCChh-----HHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhhHH-----HHHHH
Q 023915 147 SGKLLKDAYVVVKDNSE----SISHP-----AIKKFASAFVRLGNINLVNDVMKAIHAT-GYRIDQGIFH-----IAIAR 211 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~----~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~y~-----~li~~ 211 (275)
..+++..|..++++... ...+| .+...+..+...+++.+|...|.+.-+. ...-|...+. .++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999887642 23333 3466777888889999888888776542 1112222222 22222
Q ss_pred HHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhh
Q 023915 212 YIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFG 252 (275)
Q Consensus 212 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g 252 (275)
.....+ +.-..+..........++...|..++++|....
T Consensus 269 iLa~~~--~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~ 307 (445)
T 4b4t_P 269 VLSPYG--NLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE 307 (445)
T ss_dssp HHSSCS--STTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCC
T ss_pred HhCCCC--chHHHHHHHHhhcccccccHHHHHHHHHHHhch
Confidence 221111 112223333322233466778888888886544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.47 E-value=0.32 Score=37.75 Aligned_cols=91 Identities=8% Similarity=0.037 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcc-CCH
Q 023915 46 MESVMHVMRKLDELAISPD---YNTFHILIKYFCKE-----KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKM-RAH 116 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 116 (275)
...|..++++..+ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+-.-+..++....+.+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4567777777766 5577 55788899999985 99999999999999864322467888889999885 999
Q ss_pred HHHHHHHHHHHhcccc--ccHHhH
Q 023915 117 SEALSVYNMLRYSKRS--MCKALH 138 (275)
Q Consensus 117 ~~a~~~~~~m~~~~~~--~~~~~~ 138 (275)
+.+.+.+++....... |.....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 9999999999888776 654333
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.46 E-value=0.16 Score=32.59 Aligned_cols=66 Identities=15% Similarity=-0.030 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 023915 64 DYNTFHILIKYFCKEKMYILAYRTMVDMHRKG------HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (275)
Q Consensus 64 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 129 (275)
+..-+-.+...+.+.++++.|...|+...+.- -.+....+..+..++.+.|+++.|...+++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455677777888888888888888776531 1234567777888888888888888888877654
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.39 E-value=0.21 Score=38.77 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHcc-----CCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHcc-C
Q 023915 9 GCFEEAKQLAGDFEAKYDK-YDVVLLNSMLCAYCRT-----GDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKE-K 79 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~-~ 79 (275)
+....|...+++..+.... .+...|..+...|.+. |+.++|.+.|++..+ +.|+ ..++......+++. |
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 4567788888888776332 1356899999999994 999999999999998 5573 67788888888885 9
Q ss_pred CHHHHHHHHHHHHHcCCC--CCHHhHH
Q 023915 80 MYILAYRTMVDMHRKGHQ--PEEELCS 104 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~--~~~~~~~ 104 (275)
+.+.+.+.+++..+.... |+....+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999999999987665 6644333
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.72 Score=32.86 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=21.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023915 42 RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDM 91 (275)
Q Consensus 42 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 91 (275)
+.|+++.|.++.+++ -+...|..|-....+.|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345555555554443 23344555555555555555555555543
No 228
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.26 Score=43.77 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=79.3
Q ss_pred hhhhcCc-HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCC-HHHHHHHHHHHhhc------CCCCChh---------
Q 023915 4 AFCRGGC-FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDEL------AISPDYN--------- 66 (275)
Q Consensus 4 ~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p~~~--------- 66 (275)
.+...|+ .+.|..+|+.+......-+.....++|..+.+.++ --+|.+++.+..+. ...+...
T Consensus 257 ~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 336 (754)
T 4gns_B 257 FIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM 336 (754)
T ss_dssp HHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc
Confidence 3444555 58899999999887443333333445555444432 23455555554321 1222211
Q ss_pred --hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 67 --TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 67 --t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
..+.=...+...|+++.|+.+-++.... .|+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1112233466789999999999998765 555 6799999999999999999999998873
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.70 E-value=0.38 Score=30.17 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 46 MESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
.++|..+|++..+ ..|+. .....+-..+.+.|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555544444 22332 2233333444444555555555555443
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.08 E-value=0.53 Score=29.51 Aligned_cols=49 Identities=8% Similarity=-0.091 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 023915 11 FEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 60 (275)
.++|..+|++.....+. ++.....+-..+.+.|++++|++.|+.+.+..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 79999999999988665 77888899999999999999999999998743
No 231
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.87 E-value=0.68 Score=29.46 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 023915 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (275)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (275)
+.-+..+-++.+....+.|+.....+.+++|.|.+|+..|.++|+..+..- .....+|..+++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 455677777777777888888888888888888888888888888877442 23344576666653
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.77 E-value=0.2 Score=40.94 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=58.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHhHH
Q 023915 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR-----KGHQPEEELCS 104 (275)
Q Consensus 32 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~ 104 (275)
+...++.++...|++++|+..+..+... -+-+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4566788888999999999988888653 334667899999999999999999999999763 59999876543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.68 E-value=0.87 Score=30.40 Aligned_cols=80 Identities=11% Similarity=-0.035 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHH---HHHHHHHHhhcCCCC-Chh-hHHHHHHHHHccCCHHHHHHH
Q 023915 13 EAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMES---VMHVMRKLDELAISP-DYN-TFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 13 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p-~~~-t~~~li~~~~~~~~~~~a~~~ 87 (275)
.+.+-|......|. |+..+-..+-.++.+..+..+ ++.++++....+ .| +.. ..-.|.-++.+.|+++.|.+.
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444443333333 455554555555555555444 566666655542 12 222 222344456666666666666
Q ss_pred HHHHHHc
Q 023915 88 MVDMHRK 94 (275)
Q Consensus 88 ~~~m~~~ 94 (275)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666653
No 234
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=93.40 E-value=0.64 Score=35.38 Aligned_cols=244 Identities=8% Similarity=-0.034 Sum_probs=120.7
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHH---hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVV---LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT--FHILIKYFC 76 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~ 76 (275)
+...++.|+++.+..++ +.|..++.. .-.+.+...+..|+.+- ++.+.+.|..|+... -.+.+...+
T Consensus 9 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 34567778877665554 445544432 11244555566777644 444445566555432 123444455
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH------------hHHHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEE---LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA------------LHEKI 141 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~l 141 (275)
..|+.+ +++.+.+.|..++.. .++ .+...+..|+.+-+..++ ..+..++.. .-...
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLY----KRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHH----HhCCCcccccccHHHHHhhccCCCcH
Confidence 666655 455555667665432 222 334445566665444443 333332211 01123
Q ss_pred HHHHHhccchHHHHHHHHHhhcCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHhc
Q 023915 142 LHILISGKLLKDAYVVVKDNSESISHP--AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG---IFHIAIARYIAER 216 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~~ 216 (275)
+...+..|+.+-+..+++......... .-.+.+...+..++.....++.+.+.+.|..++.. -.+.|..+ + ..
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A-~-~~ 229 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA-V-EK 229 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH-H-HT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH-H-Hc
Confidence 445556777777666666522211111 11122333445666666677777788888776643 34445444 3 55
Q ss_pred hhHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHHhh-HHHHHHHHhccCCCCC
Q 023915 217 EKKELLLKLLEWMTGQGYVVDS---STRNLILKNSHLFG-RQLIADILSKQHMKSK 268 (275)
Q Consensus 217 ~~~~~a~~l~~~m~~~~~~p~~---~t~~~li~~~~~~g-~~~~~~~~~~~~~~~~ 268 (275)
|+.+.+..+++. .|..++. .-.+.+. ...+.| .+....++.++.-+..
T Consensus 230 ~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~-~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 230 KHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp TCHHHHHHHHHS---SSCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHSSCSCC
T ss_pred CCHHHHHHHHhc---cCCCccccCCCCCcHHH-HHHHcCcHHHHHHHHHcCCCCCc
Confidence 777654444441 4544432 2223333 334445 4455555556655443
No 235
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.40 E-value=1.3 Score=30.65 Aligned_cols=31 Identities=6% Similarity=0.002 Sum_probs=13.7
Q ss_pred CCHHhHHHHHHHHhccC---CHHHHHHHHHHHHh
Q 023915 98 PEEELCSSLIFHLGKMR---AHSEALSVYNMLRY 128 (275)
Q Consensus 98 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~ 128 (275)
++..+...+-.++++.+ +.+++..+|++...
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~ 63 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP 63 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34444444444444444 33344444444443
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.05 E-value=2.1 Score=38.12 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=76.7
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHhccCC-HHHHHHHHHHHHhc------cccc-----
Q 023915 69 HILIKYFCKEKM-YILAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRA-HSEALSVYNMLRYS------KRSM----- 133 (275)
Q Consensus 69 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~~----- 133 (275)
..++..+...++ .+.|..+|+++.+.. |...+ ...++..+.+.++ --+|.+++.+..+. ...+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 588999999998763 43332 2334444444332 23455555443321 0000
Q ss_pred ------cHHhHHHHHHHHHhccchHHHHHHHHHhhcC-CC-hhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 134 ------CKALHEKILHILISGKLLKDAYVVVKDNSES-IS-HPAIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 134 ------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
+....+.=.+-|...|+++-|+++-++.... |+ -.+|..|...|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0111122233456789999999999987763 32 3489999999999999999999998863
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.85 E-value=1.1 Score=28.44 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 145 (275)
.=+..+-++.+-...+.|++....+.+.||.|.+++..|.++|+.++.+-.. ...+|..+++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHHHH
Confidence 3345556666666667777777777777777777777777777766543211 133566665553
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.83 E-value=0.8 Score=37.33 Aligned_cols=71 Identities=13% Similarity=-0.016 Sum_probs=59.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHh-----ccccccHHhH
Q 023915 67 TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALH 138 (275)
Q Consensus 67 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 138 (275)
+...++..+...|+++.+...+..+.... +.+...+..+|.++.+.|+..+|++.|+.... -|+.|++.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 35567888889999999999999987653 56788999999999999999999999998764 3888887554
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.57 E-value=1.7 Score=29.60 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=83.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 023915 8 GGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRT 87 (275)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 87 (275)
.|.+++..++..+.... .+..-||=+|......-+-+-..++++..-+- -|. ...|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 46666666666666543 14455666666655556666666666555331 222 123333333333
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCCh
Q 023915 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISH 167 (275)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (275)
+-.+ -.+...+...++.....|+.++..+++.++.. +.+|++...-.+-.+|.+.|+..+|.+++.+.-+.+.+
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3322 12334456667777777777777777777543 44455556667777888888888888888777776666
Q ss_pred hHHHH
Q 023915 168 PAIKK 172 (275)
Q Consensus 168 ~~~~~ 172 (275)
...+.
T Consensus 158 EAC~~ 162 (172)
T 1wy6_A 158 EACNA 162 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.85 E-value=1.6 Score=29.44 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=59.9
Q ss_pred cHHhHHH-HHHHHHccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 29 DVVLLNS-MLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 29 ~~~~~~~-li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
+..-|++ ....+.+.. |.-+..+-++.+....+.|+.....+.+++|.+.+|+..|.++|+-.+..- .+....|..+
T Consensus 50 t~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~ 128 (152)
T 2y69_E 50 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYV 128 (152)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHH
Confidence 3333443 334444444 566778888888888999999999999999999999999999999988542 3445568777
Q ss_pred HHHH
Q 023915 107 IFHL 110 (275)
Q Consensus 107 i~~~ 110 (275)
++-.
T Consensus 129 lqEl 132 (152)
T 2y69_E 129 IQEL 132 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.55 E-value=5.5 Score=37.52 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc-ccc---ccHHhHHHHHHHHHhccchHHHHHHHHHhhcCC-ChhHHHHHHHHH
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYS-KRS---MCKALHEKILHILISGKLLKDAYVVVKDNSESI-SHPAIKKFASAF 177 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~ 177 (275)
|..++..|-+.|.++.+.++-....+. +.. .....|..+.+.+...|++++|...+-.+.... .......|+..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 455666666666666666555433321 111 112246666666677777777766666554422 223444555555
Q ss_pred HhcCC
Q 023915 178 VRLGN 182 (275)
Q Consensus 178 ~~~~~ 182 (275)
|..|.
T Consensus 982 ce~~~ 986 (1139)
T 4fhn_B 982 TKQGK 986 (1139)
T ss_dssp HHHCC
T ss_pred HhCCC
Confidence 54443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.36 E-value=5.5 Score=33.05 Aligned_cols=228 Identities=8% Similarity=-0.016 Sum_probs=130.2
Q ss_pred hhhhhhcCcHHHHHHHHHHHHh-cCCCCcHHh--HHHHHHHHHccCCHHHH--HHHHHHHhh--cC-CCC---ChhhHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEA-KYDKYDVVL--LNSMLCAYCRTGDMESV--MHVMRKLDE--LA-ISP---DYNTFHI 70 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~--~~~li~~~~~~g~~~~a--~~~~~~m~~--~g-~~p---~~~t~~~ 70 (275)
+..|.+.|+++...+.+..+.. +|..+...+ -+.++.........+.. ..+.+.... .| +-. .......
T Consensus 63 v~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~ 142 (445)
T 4b4t_P 63 VDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKD 142 (445)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5567788888888887777664 343333322 12223333233333322 222222211 11 111 2223457
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHhHHHHHHHHhccCCHHHHHHHHHHHHhc----cccc--cHHhHH
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRK--GHQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSM--CKALHE 139 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~--~~~~~~ 139 (275)
|...+...|++.+|..++.++... |.... ...+...+..|...+++.+|..++...... ...| ....+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 788899999999999999998742 22222 246777888999999999999999987532 2222 234567
Q ss_pred HHHHHHHhccchHHHHHHHHHhhc----CCChhHHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 140 KILHILISGKLLKDAYVVVKDNSE----SISHPAIKK----FASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
..+..+...+++.+|...|.+... ..++..+.. ++....-.+....-..+..........++...|..++.+
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~ 302 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKL 302 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHH
Confidence 777888889999999888877654 233332222 222222222222223333333333334667789999999
Q ss_pred HHHh-chhHHHHHHHHHHH
Q 023915 212 YIAE-REKKELLLKLLEWM 229 (275)
Q Consensus 212 ~~~~-~~~~~~a~~l~~~m 229 (275)
|... ..+|+.+.+.|...
T Consensus 303 f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 303 FTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHCCSSSHHHHHHHTCSS
T ss_pred HHhchHhhhHHHHHHHHHH
Confidence 8522 34566666665543
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.33 E-value=3.9 Score=33.78 Aligned_cols=98 Identities=8% Similarity=-0.088 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHhccCCHHHHHHHHHHHHhc---cccccHHh--H
Q 023915 66 NTFHILIKYFCKEKMYILAYRTMVDMHRKGHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYS---KRSMCKAL--H 138 (275)
Q Consensus 66 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~--~ 138 (275)
.+...+...|.+.|+++.|.+.+.++...-..+ -...+-.+|..+...+++..+...+...... +..+.... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366778888999999999999999998653333 3457778888888999999998888876542 22222211 0
Q ss_pred HHHHHHHHhccchHHHHHHHHHhhc
Q 023915 139 EKILHILISGKLLKDAYVVVKDNSE 163 (275)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~ 163 (275)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111122356788888887776544
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.33 E-value=2.3 Score=28.67 Aligned_cols=65 Identities=9% Similarity=0.103 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH
Q 023915 80 MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 145 (275)
|.=+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-++.+- .+...+|..+++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 334466677777788899999999999999999999999999999887553 22355788887765
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.69 E-value=7.2 Score=36.71 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHH
Q 023915 68 FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (275)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 143 (275)
|..++..+-+.+.++.+.++-....+..-+-+. ..|..+.+++...|++++|...+-.+..... .......+|.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 345555555666666666555554443211111 1355566666666666666666555443322 2234455555
Q ss_pred HHHhccch
Q 023915 144 ILISGKLL 151 (275)
Q Consensus 144 ~~~~~~~~ 151 (275)
.+|..+..
T Consensus 980 ~lce~~~~ 987 (1139)
T 4fhn_B 980 QLTKQGKI 987 (1139)
T ss_dssp HHHHHCCH
T ss_pred HHHhCCCh
Confidence 55554443
No 246
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.08 E-value=3 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=11.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 023915 174 ASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 174 i~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 247
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=89.45 E-value=1.4 Score=32.60 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=10.6
Q ss_pred HccCCHHHHHHHHHHHhhcCCCC
Q 023915 41 CRTGDMESVMHVMRKLDELAISP 63 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p 63 (275)
++.|+.+.+..+++.+.+.|..+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Confidence 34455555554544444444333
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.33 E-value=3 Score=29.26 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=18.5
Q ss_pred HHHHHHhccchHHHHHHHHHhhcCCChhHHHHHH
Q 023915 141 ILHILISGKLLKDAYVVVKDNSESISHPAIKKFA 174 (275)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li 174 (275)
+-.+|.+.+++++|+.+++.+......|-.|.++
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 4445556666666666666655544444444433
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.32 E-value=4 Score=28.23 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHhhcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 023915 149 KLLKDAYVVVKDNSES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIAR 211 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 211 (275)
++.++|.++|+.+... ...-.+......=.+.|++..|.+++..-...+.+| .....+.|+-
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 4555555555554331 112233444445556666666666666655554332 2344444433
No 250
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=88.45 E-value=4.2 Score=31.84 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=11.9
Q ss_pred HHHHHHHhccchHHHHHHHHHhh
Q 023915 140 KILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
.++.-|...|+.++|...++++.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC
Confidence 44555555555555555555543
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.44 E-value=4.7 Score=27.89 Aligned_cols=105 Identities=8% Similarity=-0.132 Sum_probs=61.9
Q ss_pred cHHhHHHHHHHHHccCCH------HHHHHHHHHHhhcCCCCChhh-HHHHHHH------HHccCCHHHHHHHHHHHHHcC
Q 023915 29 DVVLLNSMLCAYCRTGDM------ESVMHVMRKLDELAISPDYNT-FHILIKY------FCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~t-~~~li~~------~~~~~~~~~a~~~~~~m~~~g 95 (275)
|..+|=..+...-+.|++ ++..++|++... .++|+... |..-|.. +...+|+++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666776 677777776655 36665321 1111111 112377888888888887652
Q ss_pred CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccH
Q 023915 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK 135 (275)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 135 (275)
-.- ...|-.....=.+.|++..|.+++......+..|..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 222 444444444456678888888888877766665543
No 252
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=88.06 E-value=4.9 Score=32.25 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=12.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHhh
Q 023915 139 EKILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~ 162 (275)
+.+|.-|...++.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 445555555555555555555544
No 253
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=87.74 E-value=8.5 Score=30.05 Aligned_cols=107 Identities=9% Similarity=-0.051 Sum_probs=50.9
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHcc
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFCKE 78 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~ 78 (275)
..++.|+.+.+..++.. .+..++ ..-. +.+...+..|+.+-+. .+.+.|..++.... .+.+...+..
T Consensus 30 ~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 30 EAARSGNEEKLMALLTP---LNVNCHASDGRKS-TPLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHTCHHHHHHHCCT---TTTTCCCSSTTCC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh---cCCCcccCCCCCC-CHHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 45667777777776543 233222 2222 3344445667764433 33445555443321 1334444556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHhccCCHHHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEE---LCSSLIFHLGKMRAHSEALSVY 123 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 123 (275)
|+.+ +++.+.+.|..++.. -++ .+...+..|+.+-+..++
T Consensus 102 g~~~----iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll 144 (351)
T 3utm_A 102 GHYE----VTELLLKHGACVNAMDLWQFT-PLHEAASKNRVEVCSLLL 144 (351)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred CCHH----HHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 6655 444455556555432 222 333334556665544444
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.70 E-value=11 Score=30.99 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcC-CCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CChhhHHHHHHHHHccCCHHHHHH
Q 023915 11 FEEAKQLAGDFEAKY-DKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS--PDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
+++..+......+.. ... -..++..+-.-|.+.|+.+.|.+.|.++...-.. --...+-.+|+.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444445555555422 222 2346777888888899999999999888864332 334567778888888889998888
Q ss_pred HHHHHHH---cCCCCCHHhH--HHHHHHHhccCCHHHHHHHHHHHHh
Q 023915 87 TMVDMHR---KGHQPEEELC--SSLIFHLGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 87 ~~~~m~~---~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~ 128 (275)
.+++... .+-.|+...- ..-...+...+++..|.+.|-+...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 8888763 2323332211 1111223456788888887777654
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.68 E-value=4 Score=31.19 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=71.5
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA--ISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~ 80 (275)
....+.|++++|++....-.+..+. |...-..++..+|-.|++++|.+=++...+.. ..|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 4567888999999888887776554 77888888899999999999988887776622 22233345554443
Q ss_pred HHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHhc--cCCHHHHHHHHHHHHh
Q 023915 81 YILAYRTMVDMHRKGHQPE-----EELCSSLIFHLGK--MRAHSEALSVYNMLRY 128 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~--~g~~~~a~~~~~~m~~ 128 (275)
+..=.+....+-.|. ..-...++.+... .|+.++|..+-.+...
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 222223333332331 1233445555443 5888888777776643
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.78 E-value=6.3 Score=24.98 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=23.6
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKG 95 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (275)
+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++..-+.++-.+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555544432 355555544432 34444455444444444443
No 257
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=83.76 E-value=3.9 Score=31.37 Aligned_cols=211 Identities=7% Similarity=-0.041 Sum_probs=104.1
Q ss_pred hhcCcHHHHHHHHHHHHhcCC-CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
.+..+..+..+++.. .++ .+|..-++.| ...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+
T Consensus 7 i~~~~~~~v~~lL~~---~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 7 INTWKSKQLKSFLSS---KDTFKADVHGHSAS-YYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GGGCCHHHHHHHHHS---TTTTCCCTTSCCHH-HHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HHhcCHHHHHHHHHh---CCCCccCCCCCCHH-HHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 345566666666543 232 2233334444 4445677775554443 445555544333556666777877644
Q ss_pred HHHHHHHHHcCCCCCHH---hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH---hHHHHHHHHHhccchHHHHHHH
Q 023915 85 YRTMVDMHRKGHQPEEE---LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA---LHEKILHILISGKLLKDAYVVV 158 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~ 158 (275)
+.+.+.|..++.. -++ .+...+..|+.+-+.-+++. |..++.. .+...+...+..|+.+-+..++
T Consensus 79 ----~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll 149 (285)
T 3kea_A 79 ----KILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149 (285)
T ss_dssp ----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4444567655432 223 33444556776655554443 3333221 1134455556677776665555
Q ss_pred HHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 159 KDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHI-AIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 159 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~-li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
+.-....+...-.+.+...+..|+.+-+..+++.=..... .|..-.+. |..+ + ..++.+ +.+.+.+.|..|+
T Consensus 150 ~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A-~-~~~~~~----~v~~Ll~~gad~~ 222 (285)
T 3kea_A 150 SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLA-I-DNKDIE----MLQALFKYDINIY 222 (285)
T ss_dssp TTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHH-H-HHTCHH----HHHHHTTSCBCST
T ss_pred hCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHH-H-HcCCHH----HHHHHHHcCCCCC
Confidence 5432222221334455556677887766666554222111 12222333 3323 3 445544 4455566777776
Q ss_pred hhh
Q 023915 238 SST 240 (275)
Q Consensus 238 ~~t 240 (275)
...
T Consensus 223 ~~~ 225 (285)
T 3kea_A 223 SAN 225 (285)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 258
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=83.47 E-value=6.4 Score=28.71 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.3
Q ss_pred hhhhcCcHHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLA 18 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~ 18 (275)
..++.|+++.+..++
T Consensus 15 ~A~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 15 KATQYGIYERCRELV 29 (240)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHH
Confidence 345555555444443
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.34 E-value=7.7 Score=29.15 Aligned_cols=210 Identities=8% Similarity=-0.016 Sum_probs=102.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCChh---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHH
Q 023915 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEEL--CSSLIFH 109 (275)
Q Consensus 35 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~ 109 (275)
+.+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 4455567788876555544 445444432 1124555666777765 4555556676655321 1233444
Q ss_pred HhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccchHHHHHHHHHhhcCCCh-----------hHHHHHHHH
Q 023915 110 LGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDAYVVVKDNSESISH-----------PAIKKFASA 176 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~li~~ 176 (275)
.+..|+.+-+..++ +.|..++.. .-...+...+..|+.+-+..+++.-...... ..-.+.+..
T Consensus 79 A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~ 154 (285)
T 1wdy_A 79 AAIAGSVKLLKLFL----SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154 (285)
T ss_dssp HHHHTCHHHHHHHH----HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred HHHcCCHHHHHHHH----HcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence 45567765444443 344333211 1112344455667776666666542221100 001133445
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHHh
Q 023915 177 FVRLGNINLVNDVMKAIHATGYRIDQ---GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSST--RNLILKNSHLF 251 (275)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t--~~~li~~~~~~ 251 (275)
.+..|+.+-+..+++. .|..++. ...+.+..+. ..+..+...++++.+.+.|..++... -.+.+...++.
T Consensus 155 A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHAL--LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHH--HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHHH--HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 5566776655554332 2544433 3445555553 33544445667777777887765432 12233444455
Q ss_pred hH-HHHHHHHh
Q 023915 252 GR-QLIADILS 261 (275)
Q Consensus 252 g~-~~~~~~~~ 261 (275)
|. +....++.
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 64 44444444
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.28 E-value=6.7 Score=24.91 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++..-+.++-.+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344455555555544432 355554444432 2344444444444444333
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.92 E-value=10 Score=26.64 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=69.6
Q ss_pred cCCCCcHH--hHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 24 KYDKYDVV--LLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDY-------NTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 24 ~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
.|+.|-.. .+-.-+..+...|.++.|.-+.+.+... +..|+. .++..+.+++...+++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555433 4455677778888888888877775542 233442 2556777788888999999999888542
Q ss_pred cC------------------------CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc
Q 023915 94 KG------------------------HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC 134 (275)
Q Consensus 94 ~g------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 134 (275)
.. ...+...--.+-.+|.+.+++++|+.+++.+......|.
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 11 011112334477888999999999999988765555543
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.42 E-value=11 Score=28.80 Aligned_cols=117 Identities=11% Similarity=-0.024 Sum_probs=70.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccc--cccHHhHHHHHHHHHhccc
Q 023915 73 KYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR--SMCKALHEKILHILISGKL 150 (275)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~ 150 (275)
....+.|+++.++.....-.+.. +-|...-..++..+|-.|++++|.+-++...+... .+....|..+|.+=...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R-- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence 34567788888888887777653 55666777788888999999999888887765433 33333455555431110
Q ss_pred hHHHHHHHHHhh--c--CCChhHHHHHHHHHHh--cCChhHHHHHHHHHHHc
Q 023915 151 LKDAYVVVKDNS--E--SISHPAIKKFASAFVR--LGNINLVNDVMKAIHAT 196 (275)
Q Consensus 151 ~~~a~~~~~~~~--~--~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 196 (275)
.++|.--. . ...++-...++.+... .|+.+.|..+-....+.
T Consensus 82 ----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 ----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 01111100 0 1222244566665554 48888888888777553
No 263
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.07 E-value=18 Score=28.30 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc--hhHHHHHHHHHHHhhCCCCCChhh
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER--EKKELLLKLLEWMTGQGYVVDSST 240 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~--~~~~~a~~l~~~m~~~~~~p~~~t 240 (275)
..+.++.-|...|+.++|.+.++++....+.+ ...+..+..++ .+. ...+.+.+++..+.+.|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~al-E~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVL-ESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHH-TCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45678999999999999999998886421111 23445555554 232 235667888888887776554433
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=79.51 E-value=17 Score=27.13 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=58.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhc--CCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDEL--AISP----DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH 109 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (275)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-..+..+.+++. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 366778889999999998887642 3332 11233344444444444455666666663 2 5566677778888
Q ss_pred HhccCCHHHHHHHHHHHH
Q 023915 110 LGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~ 127 (275)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 889999999998887754
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.30 E-value=9.8 Score=25.92 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=53.7
Q ss_pred CCCCcHHhHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 023915 25 YDKYDVVLLNSMLCAYCRTGD---MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 25 g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (275)
+..|+..+--..-.++.+..+ ..+++.++++....+-.-.....-.|.-++.+.|+++.|.+..+.+++. .|+.
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 346777776667777777765 4568889999887442112333446667899999999999999999985 6754
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.25 E-value=24 Score=28.70 Aligned_cols=232 Identities=12% Similarity=0.036 Sum_probs=134.6
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhc-CCC---CcHHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCChhhH------HH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAK-YDK---YDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTF------HI 70 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~------~~ 70 (275)
...|.+.|+.++..+++.....- +.- .....-..+|+.+.... ..+.-.++..+..+..- -...+| .-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~k 104 (394)
T 3txn_A 26 GELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEAR 104 (394)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35678889999988888876541 111 13455778888887754 34455555555543211 112233 26
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHhccCCHHHHHHHHHHHHhcc--ccccHHhHHHHHH
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPE-----EELCSSLIFHLGKMRAHSEALSVYNMLRYSK--RSMCKALHEKILH 143 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~ 143 (275)
+...|...|++.+|..++..+.+.=-..| ...|-.-+..|...++..++...+....... +.+++.. ...++
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-QGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-HHHHH
Confidence 78889999999999999999886321222 2356667778889999999999998776432 2222322 23333
Q ss_pred H-----HH-hccchHHHHHHHHHhhc---CCChhHHH-----HHHHHHHhcCChhHHHHHHH-HHHHcCCCCChhhHHHH
Q 023915 144 I-----LI-SGKLLKDAYVVVKDNSE---SISHPAIK-----KFASAFVRLGNINLVNDVMK-AIHATGYRIDQGIFHIA 208 (275)
Q Consensus 144 ~-----~~-~~~~~~~a~~~~~~~~~---~~~~~~~~-----~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~y~~l 208 (275)
. +. ..+++..|...|-+... ....+.+. .++.+...... .+...++. .....-..|+...+..+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r-~el~~~l~~~~~~~~~~pei~~l~~L 262 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS-DDVNQLVSGKLAITYSGRDIDAMKSV 262 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHSHHHHTTCSHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH-HHHHHHhccccccccCCccHHHHHHH
Confidence 2 33 67889999887766532 12222211 22333333332 23222221 11111134777778888
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhCCCCCChh
Q 023915 209 IARYIAEREKKELLLKLLEWMTGQGYVVDSS 239 (275)
Q Consensus 209 i~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~ 239 (275)
+.+| ..+++.+...+++.... .+..|..
T Consensus 263 ~~a~--~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 263 AEAS--HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHH--HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHH--HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 8886 44677666677666533 3445544
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.52 E-value=5.5 Score=26.76 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=53.9
Q ss_pred CCCCcHHhHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 023915 25 YDKYDVVLLNSMLCAYCRTGD---MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 25 g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (275)
+..|+..+--..-.++.+..+ ..+++.++++..+.+-.-.....--|.-++.+.|+++.|.+..+.+.+. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 456677776666666676665 4568999999887651113445557777999999999999999999874 6764
No 268
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.08 E-value=17 Score=27.66 Aligned_cols=182 Identities=9% Similarity=-0.080 Sum_probs=91.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHccCC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFCKEKM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~ 80 (275)
...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+.. +.+.|..|+.... .+.+...+..|+
T Consensus 36 ~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp HHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence 34556677765555543 4554444333345555667777654443 4445665554321 233444556677
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH-hHHHHHHHHHhccchHHHHH
Q 023915 81 YILAYRTMVDMHRKGHQPEEE---LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA-LHEKILHILISGKLLKDAYV 156 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~ 156 (275)
.+-+ +.+.+.|..++.. -+.+.+...+..|+.+-+..+ ...+..+... .-...+...+..|+.+-+..
T Consensus 108 ~~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 6644 4444456555433 223455555666776544443 3333333111 22344555567788777766
Q ss_pred HHHHhhcCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 023915 157 VVKDNSESI--SHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGI 204 (275)
Q Consensus 157 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 204 (275)
+++.-.... +....+..+...+..|+.+ +.+.+.+.|..|+...
T Consensus 180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHTCTTCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTT
T ss_pred HHHcCCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCC
Confidence 666532211 1111122233344455543 4455667787777665
No 269
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=78.07 E-value=6.4 Score=31.24 Aligned_cols=207 Identities=10% Similarity=-0.003 Sum_probs=92.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 80 (275)
...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+.-+ .+.|..++...-.+.+...+..|+
T Consensus 25 ~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHHHHcCC
Confidence 3445566665555544 3354444322 12233444455665443333 333434443222334444556677
Q ss_pred HHHHHHHHHHHHHcCCCCCH--------------------HhHHHHHHHHhccC--CHHHHHHHHHHHHhccccccHH--
Q 023915 81 YILAYRTMVDMHRKGHQPEE--------------------ELCSSLIFHLGKMR--AHSEALSVYNMLRYSKRSMCKA-- 136 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~-- 136 (275)
.+-+..+++.-...|..++. .-.+.|.. .+..| +.+-+..+++. |..++..
T Consensus 97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~v~~Ll~~----ga~~~~~d~ 171 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEMIKILVQL----GASPTAKDK 171 (364)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHHHHHHHHH----TCCTTCCCT
T ss_pred HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHHHHHHHHc----CCCCcccCC
Confidence 77666666665544544443 11233333 33444 44433333332 2222111
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcC----CChh--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh---hhHHH
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSES----ISHP--AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ---GIFHI 207 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~y~~ 207 (275)
.-...+...+..|+.+-+..+++.-... .+.. .-.+.+...+..|+.+-+ +.+.+.|..++. .-.+.
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~gad~~~~d~~g~tp 247 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA----MRFVEMGIDVNMEDNEHTVP 247 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH----HHHHTTTCCTTCCCTTSCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCH
Confidence 1112333445566666666666542220 1000 011223334455665533 334455655543 33455
Q ss_pred HHHHHHHhchhHHHHHHHHHH
Q 023915 208 AIARYIAEREKKELLLKLLEW 228 (275)
Q Consensus 208 li~~~~~~~~~~~~a~~l~~~ 228 (275)
|..+ + ..|+.+.+..+++.
T Consensus 248 L~~A-~-~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 248 LYLS-V-RAAMVLLTKELLQK 266 (364)
T ss_dssp HHHH-H-HTCCHHHHHHHHHH
T ss_pred HHHH-H-HhChHHHHHHHHHc
Confidence 5544 3 55777766666654
No 270
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=77.91 E-value=17 Score=26.23 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=39.4
Q ss_pred HHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC-----HHHHHHHHHHHHhccc
Q 023915 70 ILIKYFCKE---KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-----HSEALSVYNMLRYSKR 131 (275)
Q Consensus 70 ~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 131 (275)
-+|+++.|+ .|+|.|+-.+.+|++.|..|....-..++.+.-..|. +..|...++....-|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 345555444 7888888888888888888877666667766665553 2334444444444443
No 271
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=77.64 E-value=18 Score=26.23 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=38.8
Q ss_pred HHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC-----HHHHHHHHHHHHhccc
Q 023915 69 HILIKYFCKE---KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-----HSEALSVYNMLRYSKR 131 (275)
Q Consensus 69 ~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 131 (275)
--+|+++.|+ .|+|.|+-.+.+|++.| .|....-..++.+.-..|. ...|...++....-|.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445555544 78888888888888888 7776666667777666554 2334444444444443
No 272
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=75.65 E-value=9.6 Score=27.70 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=8.0
Q ss_pred hhhcCcHHHHHHHHHH
Q 023915 5 FCRGGCFEEAKQLAGD 20 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~ 20 (275)
.++.|+++....+++.
T Consensus 13 A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 13 LAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHh
Confidence 4445555555555443
No 273
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=74.30 E-value=15 Score=25.86 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=7.8
Q ss_pred HccCCHHHHHHHHH
Q 023915 41 CRTGDMESVMHVMR 54 (275)
Q Consensus 41 ~~~g~~~~a~~~~~ 54 (275)
+..|+.+.+..++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 45566665555543
No 274
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.28 E-value=17 Score=24.41 Aligned_cols=71 Identities=13% Similarity=-0.011 Sum_probs=48.7
Q ss_pred CCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 60 AISPDYNTFHILIKYFCKEK---MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 60 g~~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
+-.|+..|-=...-++.++. +...++.+++++.+.+-.-.....--|--++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 33455555334444555554 455789999998876521234456667889999999999999999988654
No 275
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=73.33 E-value=4.9 Score=29.38 Aligned_cols=200 Identities=10% Similarity=-0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCCcHHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh---HHHHHHHHHccCCHHHHHHHHH
Q 023915 15 KQLAGDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT---FHILIKYFCKEKMYILAYRTMV 89 (275)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~ 89 (275)
.++++.+.+.|..++... -.+.+...++.|+.+-+..++ +.|..++... -.+.+...+..|+.+- ++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t~L~~A~~~~~~~~----v~ 93 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQGHLSM----VV 93 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBCHHHHHHHHTCHHH----HH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCChhHHHHHcCCHHH----HH
Confidence 467788888877655432 224556667778875544444 4444333221 1234455566677654 44
Q ss_pred HHHHcCCCCCHHh--HHHHHHHHhccCCHHHHHHHHHHHHhcccccc---HHhHHHHHHHHHhccchHHHHHHHHHhhcC
Q 023915 90 DMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC---KALHEKILHILISGKLLKDAYVVVKDNSES 164 (275)
Q Consensus 90 ~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (275)
.+.+.|..++... -.+.+...++.|+.+-+..+++ .+..++ ....+.+..+... +......+++.+....
T Consensus 94 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L~~~~~~ 168 (240)
T 3eu9_A 94 QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA----KGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLLLTFNVS 168 (240)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHHHHTTCC
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh----cCCCccccCCCCCcHHHHHHHh-CChHHHHHHHHhcCCC
Confidence 5556676655321 1133444455677664444433 333332 1222334444433 3333444444443322
Q ss_pred CChh---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 165 ISHP---AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQG---IFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 165 ~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
.... .-.+.+...+..|+.+-+..+ .+.|..|+.. -.+.+-.+ + ..|+.+.+..+++...+.+
T Consensus 169 ~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A-~-~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 169 VNLGDKYHKNTALHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLA-K-QRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TTCCCTTTCCCHHHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHH-H-HTTCHHHHHHHHHHC----
T ss_pred cchhhccCCCcHHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHH-H-HcCcHHHHHHHHHhhhccC
Confidence 1111 112344555667777654444 4456655533 23444433 3 5688886666666554444
No 276
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=72.48 E-value=3.5 Score=27.97 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=8.2
Q ss_pred hhhcCcHHHHHHHHHH
Q 023915 5 FCRGGCFEEAKQLAGD 20 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~ 20 (275)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555555444
No 277
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=72.10 E-value=18 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
=|.|++-|...|++..|.+++..+.
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 4888999999999999999998754
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.09 E-value=19 Score=23.95 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcCCChh--HHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCh
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSESISHP--AIKKFASAFVRLG--NINLVNDVMKAIHATGYRIDQ 202 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~ 202 (275)
....++.-|...|+.++|...++++......+ ....+..++-+.+ ..+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35678888888888888888888875321111 2233444444443 245677777777766654443
No 279
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=71.88 E-value=7.3 Score=29.06 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=12.4
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCC
Q 023915 41 CRTGDMESVMHVMRKLDELAISPD 64 (275)
Q Consensus 41 ~~~g~~~~a~~~~~~m~~~g~~p~ 64 (275)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 445555555555555555444444
No 280
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=71.31 E-value=20 Score=24.35 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccch
Q 023915 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (275)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 151 (275)
+.+.+.|+.++.. -..++..+...+..-.|.++++.+...+...+..|.-..++.+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456677666642 3345555555566667777888777766666666665666666665543
No 281
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=70.69 E-value=24 Score=25.51 Aligned_cols=52 Identities=4% Similarity=-0.088 Sum_probs=26.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHHhchhHHHHHHHHH
Q 023915 174 ASAFVRLGNINLVNDVMKAIHATGYRI---------DQGIFHIAIARYIAEREKKELLLKLLE 227 (275)
Q Consensus 174 i~~~~~~~~~~~a~~~~~~m~~~g~~p---------~~~~y~~li~~~~~~~~~~~~a~~l~~ 227 (275)
+...+..|+.+.+..+++.+.+.|..+ |....+.|-.+ + ..|+.+.+..+++
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A-~-~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA-G-VEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH-H-HHTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH-H-HcCCHHHHHHHHh
Confidence 344455666666666666666665433 33344444433 2 4466654444444
No 282
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=70.55 E-value=37 Score=26.75 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 131 (275)
+++.+.+.|+.|...++.-++..|.+.=.++.+..+|+.+...|.
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Confidence 566677789999988888899999988889999999998876654
No 283
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=70.38 E-value=30 Score=27.44 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=12.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHH
Q 023915 138 HEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
...++..+.+....+.+.++|++
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 34445555555555555666554
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.27 E-value=37 Score=26.59 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH----H
Q 023915 10 CFEEAKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL----A 84 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~----a 84 (275)
.+++.+.-++.-.+.|--- -...|-++..-|.+.+++++|++++..--. .+.+.|+... |
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLI 76 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHH
Confidence 3455555555555554211 234677777777778888888877644321 2334455444 3
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHH-HHHHHHHHHH----hcc--ccccHHhHHHHHHHHHhccchHHHHHH
Q 023915 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS-EALSVYNMLR----YSK--RSMCKALHEKILHILISGKLLKDAYVV 157 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (275)
.-+.+-..+.+++++......++..+.....-+ .-.++.+.+. ..+ ..-++..+..+-..|.+.+++.+|..-
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 445556667788888888888888776643221 1223333333 222 223556677777777777777777665
Q ss_pred HH
Q 023915 158 VK 159 (275)
Q Consensus 158 ~~ 159 (275)
|-
T Consensus 157 ~i 158 (312)
T 2wpv_A 157 FM 158 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=70.19 E-value=39 Score=26.77 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=31.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCC
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISP 63 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p 63 (275)
|.=|...|+.++|.+.++++...... ...++..+..++-+.. .-+.+..++..+.+.|+-+
T Consensus 18 l~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 18 IEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 44566677888887777777522111 2223333343433322 2344556666666655433
No 286
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=69.09 E-value=70 Score=29.33 Aligned_cols=147 Identities=11% Similarity=-0.028 Sum_probs=81.6
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHhcc--ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 023915 104 SSLIFHLGKMRA---HSEALSVYNMLRYSK--RSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFV 178 (275)
Q Consensus 104 ~~li~~~~~~g~---~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 178 (275)
..++...|+.|. .+.|.+.|+.....+ ....+..-..+...-.+.|.-++-..+++.......+..-..++.+++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~ 769 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhC
Confidence 346666777766 456777887766532 122222334444444556666655556666666666656677888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHH---hhCCCCCChhhHHHHHHHHHHh
Q 023915 179 RLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWM---TGQGYVVDSSTRNLILKNSHLF 251 (275)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m---~~~~~~p~~~t~~~li~~~~~~ 251 (275)
...+.+...++++............... ++.+...+..-.+.+.+.+.+= ....+..+...+..+|.+....
T Consensus 770 ~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp TCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 8888888888877765533222223333 3334333333334455555431 1123334455667777766543
No 287
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=68.62 E-value=0.0065 Score=50.53 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=79.0
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
|+..|..+|.+..+.|.+++-+..+...++..-.|.+.| .|+-+|++.+++.+...++ -.||..-...+-+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDt--eLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTH--HHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHH--HHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 444455555555555555555555544444333333332 5555555555544321111 1234333444444
Q ss_pred HHhccCCHHHHHHHHHHHHh--------------------ccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh
Q 023915 109 HLGKMRAHSEALSVYNMLRY--------------------SKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP 168 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~--------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (275)
-|...|.++.|.-+|..+.. ....-+..+|--+-.+|+..+.+..|--.--.+.- .+.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv--had 230 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--HAD 230 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC--CSS
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc--cHH
Confidence 44444444444443333210 01112334566666666666655543222211111 111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHH
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGY-RIDQGIFHIAIARYI 213 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~~~ 213 (275)
....++..|-..|.+++.+.+++.=. |+ .....+|+-|--.|+
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 22345666777788888777765433 22 234456666655554
No 288
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=68.62 E-value=32 Score=25.14 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC-----HHHHHHHHHHHHhccc
Q 023915 67 TFHILIKYFCKE---KMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-----HSEALSVYNMLRYSKR 131 (275)
Q Consensus 67 t~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 131 (275)
.+--+|+++.|+ .|+|.|+-.+.+|++.|..|....-..++.+.-..|. ...|...++....-|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 444556666554 7888899999999988888887777777777666554 2344444554444443
No 289
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=68.41 E-value=16 Score=21.72 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHcCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 91 MHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 91 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
+.+.|+.++..- ..++..+...+ ..-.+.++++.+...+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544322 33444444433 34445555555554444444444444444444443
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.49 E-value=33 Score=24.87 Aligned_cols=182 Identities=10% Similarity=-0.016 Sum_probs=91.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHH
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILI 146 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 146 (275)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++.. .-...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV----TAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHH
Confidence 45556778999988888888777776665431 123444455667765444443 344333211 1122344555
Q ss_pred hccchHHHHHHHHHhhc---CCChh--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHhch
Q 023915 147 SGKLLKDAYVVVKDNSE---SISHP--AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ----GIFHIAIARYIAERE 217 (275)
Q Consensus 147 ~~~~~~~a~~~~~~~~~---~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~~~ 217 (275)
..|+.+-+..+++.... ..... .-.+.+...+..|+.+-+ +.+.+.|..++. ...+.|..+ + ..|
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A-~-~~~ 161 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHA-V-ENN 161 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHH-H-HTT
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHH-H-HcC
Confidence 67787777777766431 11100 111223334455665544 444555655543 234455544 3 557
Q ss_pred hHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHHhh-HHHHHHHHhccCCCC
Q 023915 218 KKELLLKLLEWMTGQGYVVDSS---TRNLILKNSHLFG-RQLIADILSKQHMKS 267 (275)
Q Consensus 218 ~~~~a~~l~~~m~~~~~~p~~~---t~~~li~~~~~~g-~~~~~~~~~~~~~~~ 267 (275)
+.+.+..+ .+.|..++.. -.+.|.. .++.| .+....++..+.-++
T Consensus 162 ~~~~v~~L----l~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 162 SLSMVQLL----LQHGANVNAQMYSGSSALHS-ASGRGLLPLVRTLVRSGADSS 210 (241)
T ss_dssp CHHHHHHH----HHTTCCTTCBCTTSCBHHHH-HHHHTCHHHHHHHHHTTCCTT
T ss_pred CHHHHHHH----HHcCCCCCCcCCCCCCHHHH-HHHcCCHHHHHHHHhcCCCCC
Confidence 76644433 3456555432 2223333 34445 455555555555443
No 291
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=67.43 E-value=17 Score=21.61 Aligned_cols=60 Identities=5% Similarity=0.010 Sum_probs=31.2
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 55 KLDELAISPDYNTFHILIKYFCKEK-MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 55 ~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445565555433 23444444443 344456666666665555555555555555555443
No 292
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.23 E-value=18 Score=24.22 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=35.6
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 90 DMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 90 ~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+...+...+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 355667666542 334555555555 566777777777776666666665555556555544
No 293
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=66.89 E-value=44 Score=26.20 Aligned_cols=109 Identities=14% Similarity=0.030 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHc-C----CCCCHHhHHH---HHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccch
Q 023915 80 MYILAYRTMVDMHRK-G----HQPEEELCSS---LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (275)
Q Consensus 80 ~~~~a~~~~~~m~~~-g----~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 151 (275)
+-+.|..+|..+... + ..|+...... .+..+.+.-+ -++++.+...++.|...++..++..++..=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 345677777777643 1 2344322221 1222222222 24666667778887777777788777777778
Q ss_pred HHHHHHHHHhhcCCChhHHH---HHHH----HHHhcCChhHHHHHHHH
Q 023915 152 KDAYVVVKDNSESISHPAIK---KFAS----AFVRLGNINLVNDVMKA 192 (275)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~---~li~----~~~~~~~~~~a~~~~~~ 192 (275)
+.+..+|+.....+....+- +++. ....+.++++....++.
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 88888888766654443221 1221 12233466666666554
No 294
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.89 E-value=49 Score=26.75 Aligned_cols=110 Identities=9% Similarity=0.027 Sum_probs=53.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHh--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHcc
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT--FHILIKYFCKE 78 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~ 78 (275)
...+..|+++-+..++ +.|..|+... ..+.+...+..|+.+-+..+++ .|..++... -.+.+...++.
T Consensus 19 ~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 19 HVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp HHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHC
Confidence 3456667766555554 4455554332 2244555566777665544443 344443221 12344455566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHhccCCHHHHHHHHH
Q 023915 79 KMYILAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (275)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (275)
|+.+- .+.+.+.|..|+... -.+.+...++.|+.+.+..+++
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 76654 344444565544221 1123334445566665555544
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=66.60 E-value=19 Score=24.64 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
+.+.+.|+.++. .-..++..+...+..-.|.++++.+...+...+..|.-..++.+...|-
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345566665543 2334455555555566677777777666555555555555555555554
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.04 E-value=35 Score=24.74 Aligned_cols=32 Identities=6% Similarity=-0.034 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYRI 200 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 200 (275)
.|......+...|++.+|.++|+.=.+.+-+|
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444455555555555554444433333
No 297
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=66.03 E-value=21 Score=24.35 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHhccC-CHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccch
Q 023915 89 VDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (275)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 151 (275)
+.+.+.|+.++.. -..++..+...+ ..-.|.++++.+...+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3456667666642 334555555555 5667777777777766666666655666666665543
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.91 E-value=28 Score=24.19 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhc--cccccHHhHHHHHHHHHhccch
Q 023915 90 DMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS--KRSMCKALHEKILHILISGKLL 151 (275)
Q Consensus 90 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~ 151 (275)
.+.+.|++++. .-..++..+...+..-.|.++++.+... +...+..|.-.-++.+...|-+
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34567777754 3455666666767777888888888776 6666666665666666666643
No 299
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.47 E-value=49 Score=26.21 Aligned_cols=135 Identities=9% Similarity=0.026 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHHHHhcCCC---Cc-HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH-
Q 023915 9 GCFEEAKQLAGDFEAKYDK---YD-VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL- 83 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~- 83 (275)
+++++.++=|+.-.+.|-- -. ..+|-++..-|.+.+++++|++++-.--. .+.+.|....
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchH
Confidence 4455555555555555521 11 24677777788888888888887544221 1233344333
Q ss_pred ---HHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHH-HHHHHHHHHHh----cc--ccccHHhHHHHHHHHHhccchHH
Q 023915 84 ---AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS-EALSVYNMLRY----SK--RSMCKALHEKILHILISGKLLKD 153 (275)
Q Consensus 84 ---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~~--~~~~~~~~~~li~~~~~~~~~~~ 153 (275)
+.-+.+-..+.++++|......++..+.....-+ .=..+.+.+.. .| ..-++.....+-..|.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 4444455566778888777777777776655321 11223333321 11 33345566666677777777777
Q ss_pred HHHHH
Q 023915 154 AYVVV 158 (275)
Q Consensus 154 a~~~~ 158 (275)
|..-|
T Consensus 155 Ae~H~ 159 (336)
T 3lpz_A 155 AEKHL 159 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 300
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=65.05 E-value=17 Score=25.75 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCCCChhhH--H-HHHHHHHHhchh-HHHHHHHHHHHhh-CCCCCChhh
Q 023915 184 NLVNDVMKAIHATGYRIDQGIF--H-IAIARYIAEREK-KELLLKLLEWMTG-QGYVVDSST 240 (275)
Q Consensus 184 ~~a~~~~~~m~~~g~~p~~~~y--~-~li~~~~~~~~~-~~~a~~l~~~m~~-~~~~p~~~t 240 (275)
....++.+.+.+.|..++.... . +.+...+ ..+. ......+++.+.+ .|..++...
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~-~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIF-NYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGG-GCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHH-HcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 3344555556666666665532 1 2332222 2222 2334556666666 666666654
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.96 E-value=41 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=13.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 023915 71 LIKYFCKEKMYILAYRTMVDMH 92 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~ 92 (275)
-++.+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666666666666666654
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.84 E-value=53 Score=26.32 Aligned_cols=77 Identities=9% Similarity=0.175 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc--hhHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER--EKKELLLKLLEWMTGQGYVVDSSTRNLILK 246 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~--~~~~~a~~l~~~m~~~~~~p~~~t~~~li~ 246 (275)
..+.++.-|...|+.++|.+.++++....+.+ ...+..+..++ .+. ...+.+.+++..+...|+-+.......+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aL-E~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVL-ESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHH-ccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35788999999999999999999886422221 23445555554 232 245668899999988887655444444433
Q ss_pred H
Q 023915 247 N 247 (275)
Q Consensus 247 ~ 247 (275)
.
T Consensus 297 v 297 (358)
T 3eiq_C 297 I 297 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 303
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=64.51 E-value=30 Score=24.94 Aligned_cols=182 Identities=11% Similarity=0.063 Sum_probs=85.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHhc
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE---LCSSLIFHLGK 112 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~ 112 (275)
.+...++.|+.+....+++.-...--.+|..-++. +...+..|+.+- ++.+.+.|..++.. .++ .+...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCC-HHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCC-HHHHHHH
Confidence 35666778888888887765433212233333333 444456666554 44555667655432 223 3334445
Q ss_pred cCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCChhHHHHH
Q 023915 113 MRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGNINLVNDV 189 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 189 (275)
.|+.+-+..+ ...+..++.. .-...+...+..|+.+-+..+++.-....... .-.+.+...+..|+.+-+..+
T Consensus 83 ~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 83 AGXDEIVKAL----LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 5666544333 3333333211 11123444456677766665555422111011 111233444556666544444
Q ss_pred HHHHHHcCCCCCh---hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 190 MKAIHATGYRIDQ---GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 190 ~~~m~~~g~~p~~---~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
.+.|..++. .-.+.|..+ + ..++.+.+ +.+.+.|..|+
T Consensus 159 ----l~~g~~~~~~~~~g~t~L~~A-~-~~~~~~~v----~~Ll~~ga~~~ 199 (231)
T 3aji_A 159 ----LFYKASTNIQDTEGNTPLHLA-C-DEERVEEA----KFLVTQGASIY 199 (231)
T ss_dssp ----HHTTCCSCCCCTTSCCHHHHH-H-HTTCHHHH----HHHHHTTCCSC
T ss_pred ----HhcCCCccccCCCCCCHHHHH-H-HCCCHHHH----HHHHHCCCCCC
Confidence 445555543 233444444 3 45666533 33445566554
No 304
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=64.34 E-value=0.2 Score=41.99 Aligned_cols=172 Identities=10% Similarity=0.093 Sum_probs=103.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 81 (275)
|.+..+.|++++-...+...++. ..+...=+.|+-+|++.++..+..+++. .|+..-...+-+-|...|.+
T Consensus 90 i~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lY 160 (624)
T 3lvg_A 90 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY 160 (624)
T ss_dssp HHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCH
Confidence 56677788888888877766654 3355666899999999998766554432 26666666677777777777
Q ss_pred HHHHHHHHHHHHc--------------------CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHH
Q 023915 82 ILAYRTMVDMHRK--------------------GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKI 141 (275)
Q Consensus 82 ~~a~~~~~~m~~~--------------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 141 (275)
+.|.-+|..+... .-.-++.||-.+-.+|...+.+.-|...--.+.-..-. ...+
T Consensus 161 eAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~el 235 (624)
T 3lvg_A 161 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEEL 235 (624)
T ss_dssp TTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGG
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHH
Confidence 6666655544211 01234567888888888877776664443333222111 2235
Q ss_pred HHHHHhccchHHHHHHHHHhhc--CCChhHHHHHHHHHHhcCChhHHHH
Q 023915 142 LHILISGKLLKDAYVVVKDNSE--SISHPAIKKFASAFVRLGNINLVND 188 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 188 (275)
+..|-..|.+++-+.+++.-.. ......|+-|.-.|++- ++++..+
T Consensus 236 v~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmE 283 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMRE 283 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHH
Confidence 5566677777777777766442 23333555555555544 3444333
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=64.31 E-value=40 Score=24.76 Aligned_cols=49 Identities=10% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCCcHH--h-----HHHHHHHHHccCCHHHHHHHHHHHhhc
Q 023915 11 FEEAKQLAGDFEAKYDKYDVV--L-----LNSMLCAYCRTGDMESVMHVMRKLDEL 59 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~--~-----~~~li~~~~~~g~~~~a~~~~~~m~~~ 59 (275)
++.|+.+|+.+.+.-..++.. . --..+..|.++|.+++|.++|+...+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777776643221111 1 123344567777777777777776553
No 306
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=63.60 E-value=8.9 Score=26.16 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=7.6
Q ss_pred HHHhccchHHHHHHHH
Q 023915 144 ILISGKLLKDAYVVVK 159 (275)
Q Consensus 144 ~~~~~~~~~~a~~~~~ 159 (275)
..+..|+.+-+..+++
T Consensus 114 ~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 114 EAAAKGKYEICKLLLQ 129 (165)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344555554444444
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=62.06 E-value=12 Score=27.35 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=9.0
Q ss_pred hchhHHHHHHHHHHHhh
Q 023915 215 EREKKELLLKLLEWMTG 231 (275)
Q Consensus 215 ~~~~~~~a~~l~~~m~~ 231 (275)
..++.+.+.++.+.+.+
T Consensus 219 ~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44555555555555543
No 308
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=61.50 E-value=24 Score=26.80 Aligned_cols=13 Identities=8% Similarity=-0.189 Sum_probs=0.0
Q ss_pred hhhcCcHHHHHHH
Q 023915 5 FCRGGCFEEAKQL 17 (275)
Q Consensus 5 ~~~~g~~~~a~~~ 17 (275)
.+..|+.+++.++
T Consensus 22 Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 22 ASMDGKQGGMDGS 34 (285)
T ss_dssp -------------
T ss_pred HhhcCCCCCcccC
Confidence 3444554444443
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.34 E-value=39 Score=23.60 Aligned_cols=54 Identities=19% Similarity=0.058 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 184 NLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 184 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
++...+|..|...|+--....|-.--..++...|++.+|.++|+.=.+++-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 345566777777665544433322222333355677777777777666666664
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.19 E-value=37 Score=23.31 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcCCChh--HHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCh
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSESISHP--AIKKFASAFVRLG--NINLVNDVMKAIHATGYRIDQ 202 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~ 202 (275)
....++.-|...|+.++|...++++......+ ....+..++-+.+ ..+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45778899999999999999999876422111 2234444555532 245677777777776654443
No 311
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=61.13 E-value=19 Score=24.43 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 90 DMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 90 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
.+.+.|++++.. -..++..+...+ .-.|.++++.+...+...+..|.-.-++.+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 455566666542 233444444444 55677777777666666665555555555555443
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=60.87 E-value=26 Score=27.58 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=94.8
Q ss_pred CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 023915 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSS 105 (275)
Q Consensus 28 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (275)
.|..-++.|..+ +..|+.+-+..++ +.|..|+.... .+.+...+..|+.+- .+.+.+.|..++...-.+
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDT----AKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHH----HHHHHHHCCCCCCBTTBC
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHH----HHHHHHCCCCccccCCCC
Confidence 355556665555 4668876555544 45655554321 244555566777654 444555565555422233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhccccccH--------------------HhHHHHHHHHHhcc--chHHHHHHHHHhhc
Q 023915 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCK--------------------ALHEKILHILISGK--LLKDAYVVVKDNSE 163 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------------~~~~~li~~~~~~~--~~~~a~~~~~~~~~ 163 (275)
.+...+..|+.+-+..+++.....+..++. ...+. +...+..| +.+-+..+++. ..
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~-ga 164 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQL-GA 164 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHH-TC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHc-CC
Confidence 444455678888777777764433333322 11223 33444555 55555555554 22
Q ss_pred CCChh--HHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCC---ChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 164 SISHP--AIKKFASAFVRLGNINLVNDVMKAIHA-TGYRI---DQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 164 ~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p---~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
..+.. .-.+.+...+..|+.+-+..+++.-.. .++.+ |..-.+.|..+ + ..|+.+-+. .+.+.|..++
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A-~-~~g~~~~v~----~Ll~~gad~~ 238 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA-I-LINWEDVAM----RFVEMGIDVN 238 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHH-H-TTTCHHHHH----HHHTTTCCTT
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHH-H-HcCCHHHHH----HHHHcCCCCC
Confidence 11111 112334445566777665555443211 01112 22344555544 3 557766333 3345565554
No 313
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.16 E-value=68 Score=26.06 Aligned_cols=222 Identities=9% Similarity=-0.003 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCCh---hhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHHhH--
Q 023915 31 VLLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDY---NTFHILIKYFCKE-KMYILAYRTMVDMHRKGHQPEEELC-- 103 (275)
Q Consensus 31 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~t~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~-- 103 (275)
.....|...|.+.|+.++..+++...+.- +..|-. .....+|+.+... +..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45677888999999999999999887642 222322 3466888888775 344444444444443211 111223
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHHHhcc-----ccccHHhHHHHHHHHHhccchHHHHHHHHHhhc---CC-ChhHH
Q 023915 104 ----SSLIFHLGKMRAHSEALSVYNMLRYSK-----RSMCKALHEKILHILISGKLLKDAYVVVKDNSE---SI-SHPAI 170 (275)
Q Consensus 104 ----~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~ 170 (275)
..+...|...|++.+|.+++..+...- ...-...|..-++.|...+++..+...+..... .. .+|..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 368899999999999999999887631 222334677788889999999999988887544 22 44444
Q ss_pred HHHHH-----HHH-hcCChhHHHHHHHHHHHc-C-C-CC---ChhhHHHHHHHHHHhchhHHHHHHHHH-HHhhCCCCCC
Q 023915 171 KKFAS-----AFV-RLGNINLVNDVMKAIHAT-G-Y-RI---DQGIFHIAIARYIAEREKKELLLKLLE-WMTGQGYVVD 237 (275)
Q Consensus 171 ~~li~-----~~~-~~~~~~~a~~~~~~m~~~-g-~-~p---~~~~y~~li~~~~~~~~~~~~a~~l~~-~m~~~~~~p~ 237 (275)
...+. .+. ..+++..|...|-+--+. . . .| +...|..|... . ...+.+ ...++. .....--.|+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~e-l~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDD-VNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGG-HHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHH-HHHHhccccccccCCcc
Confidence 34333 344 789999998888664321 1 1 11 12245444333 2 223222 222222 1111113477
Q ss_pred hhhHHHHHHHHHHhhHHHH
Q 023915 238 SSTRNLILKNSHLFGRQLI 256 (275)
Q Consensus 238 ~~t~~~li~~~~~~g~~~~ 256 (275)
...+..++.+|....-..+
T Consensus 256 i~~l~~L~~a~~~~dl~~f 274 (394)
T 3txn_A 256 IDAMKSVAEASHKRSLADF 274 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHH
Confidence 7777778888766554333
No 314
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=58.66 E-value=73 Score=25.95 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=81.5
Q ss_pred HcCCCCCH-----HhHHHHHHHHhccCC---HHHHHHHHHHHHhcc----ccccHHhHHHHHHHHHhccchHHHHHHHHH
Q 023915 93 RKGHQPEE-----ELCSSLIFHLGKMRA---HSEALSVYNMLRYSK----RSMCKALHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 93 ~~g~~~~~-----~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
+.|..++. ..-..++...|..|+ .+.|.+.|+.....+ ++|+. -..+...-.+ .-++-..+++.
T Consensus 185 ~lgw~~~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dl--r~~Vy~~~~~--~~~~~~~l~~~ 260 (419)
T 3rjo_A 185 KQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDV--TLAVFAVGAQ--STEGWDFLYSK 260 (419)
T ss_dssp HCCSSCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGG--HHHHHHHHTT--SHHHHHHHHHH
T ss_pred HcCCCCCchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCc--ceeEEeeeeC--CHHHHHHHHHH
Confidence 45665542 233456677777776 567778888766542 33332 2222222222 22333344444
Q ss_pred hhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHH----HHhhCCCCC
Q 023915 161 NSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLE----WMTGQGYVV 236 (275)
Q Consensus 161 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~----~m~~~~~~p 236 (275)
.....++.--..++.+++...+.+...++++......+.+...... ++.+...+..-.+.|.+.+. .+.+ .+.+
T Consensus 261 y~~s~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~-~~~~ 338 (419)
T 3rjo_A 261 YQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQ-KFEL 338 (419)
T ss_dssp HHHCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHH-HHCT
T ss_pred HhcCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHH-HhCc
Confidence 4455555566788899988889988888888877655323333333 33344433222334554443 2322 2234
Q ss_pred ChhhHHHHHHHHHH
Q 023915 237 DSSTRNLILKNSHL 250 (275)
Q Consensus 237 ~~~t~~~li~~~~~ 250 (275)
+...+..+|.+...
T Consensus 339 ~~~~~~~~i~~~~~ 352 (419)
T 3rjo_A 339 GSSSIAHMVMGTTN 352 (419)
T ss_dssp TCHHHHHHHHHTTT
T ss_pred CchhHHHHHHHHhh
Confidence 45667777766543
No 315
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=58.13 E-value=8.6 Score=28.68 Aligned_cols=55 Identities=7% Similarity=0.010 Sum_probs=37.7
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHh-------HHHHHHHHH--ccCCHHHHHHHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVL-------LNSMLCAYC--RTGDMESVMHVMRKL 56 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~a~~~~~~m 56 (275)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3456788999998889998888777666443 355555543 567777666666554
No 316
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.11 E-value=41 Score=22.88 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=49.1
Q ss_pred CCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 023915 62 SPDYNTFHILIKYFCKEK---MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (275)
Q Consensus 62 ~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 131 (275)
.|+..|-=....++.++. +..+++.+++++.+.+-.-.....-.|--++.+.|++++|.+..+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 466655445555666665 4456888999988764322333455677789999999999999999887643
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.28 E-value=24 Score=23.92 Aligned_cols=59 Identities=3% Similarity=-0.035 Sum_probs=31.8
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 55 KLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 55 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
.+++.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-|+.+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 4555666665542 22333333344 44567777777666655566555555555555443
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.48 E-value=45 Score=22.50 Aligned_cols=34 Identities=6% Similarity=-0.211 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccC
Q 023915 81 YILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (275)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (275)
.-.|.++++.+.+.+...+..|....++.+...|
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3334444444444443344444444444444444
No 319
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=55.44 E-value=48 Score=24.38 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=11.1
Q ss_pred HHccCCHHHHHHHHHHHhhcCCC
Q 023915 40 YCRTGDMESVMHVMRKLDELAIS 62 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~ 62 (275)
.++.|+.+.+..+++.+.+.|..
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Confidence 34455555554455544444443
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.32 E-value=46 Score=22.62 Aligned_cols=60 Identities=5% Similarity=0.014 Sum_probs=28.1
Q ss_pred HhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 56 LDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 56 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4445554443321 23333333444445556666665555445555555555555555543
No 321
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=55.28 E-value=42 Score=23.91 Aligned_cols=180 Identities=10% Similarity=0.011 Sum_probs=78.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHHcCC-CC---CHHhHHHHHHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFCKEKMYILAYRTMVDMHRKGH-QP---EEELCSSLIFH 109 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~---~~~~~~~li~~ 109 (275)
.+...++.|+.+-+..+ .+.|..|+.... .+.+...+..|+.+-+.. +.+.+- .+ +....+. +..
T Consensus 28 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~t~-L~~ 98 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRL----LEASADANIQDNMGRTPLHAAVSADAQGVFQI----LIRNRATDLDARMHDGTTP-LIL 98 (223)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHBTTSCTTCCCTTCCCH-HHH
T ss_pred hHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCcccCCCCCCcH-HHH
Confidence 34444566776544433 344555543321 234444556666654333 333332 22 2222223 333
Q ss_pred HhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCChhHH
Q 023915 110 LGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGNINLV 186 (275)
Q Consensus 110 ~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a 186 (275)
.+..|+.+-+..+++ .+..++.. .-...+...+..|+.+-+..+++.-....... .-.+.+...++.|+.+-+
T Consensus 99 A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 174 (223)
T 2f8y_A 99 AARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 174 (223)
T ss_dssp HHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHhCcHHHHHHHHH----cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHH
Confidence 345566654444333 33222211 11223444456677766666665422111010 111233344556666544
Q ss_pred HHHHHHHHHcCCCCChh---hHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCCh
Q 023915 187 NDVMKAIHATGYRIDQG---IFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDS 238 (275)
Q Consensus 187 ~~~~~~m~~~g~~p~~~---~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~ 238 (275)
. .+.+.|..|+.. -.+.+-.+ + ..++.+ +++.+.+.|..++.
T Consensus 175 ~----~Ll~~ga~~~~~~~~g~t~l~~A-~-~~~~~~----i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 175 K----VLLDHFANRDITDHMDRLPRDIA-Q-ERMHHD----IVRLLDEYNLVRSP 219 (223)
T ss_dssp H----HHHHTTCCTTCCCTTCCCHHHHH-H-HTTCHH----HHHHHHHTTCSSCC
T ss_pred H----HHHHcCCCCccccccCCCHHHHH-H-HhcchH----HHHHHHHcCCCccc
Confidence 4 345556555432 23344333 3 556655 33344455655443
No 322
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.06 E-value=58 Score=23.63 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccH
Q 023915 78 EKMYILAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK 135 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 135 (275)
.+....+..+|..|...|+-.. ..-|......+-..|++.+|.++|+.-.+.+-.|..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4446678888888888877544 346667777777888888888888887777666643
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.04 E-value=48 Score=22.72 Aligned_cols=26 Identities=19% Similarity=-0.047 Sum_probs=20.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 102 LCSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
....+|.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45677888888888888888888875
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.08 E-value=55 Score=22.82 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=50.9
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEE 100 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (275)
+-|..-....|.-.-.. +++.++|..|...|+--... -|..-...+-..|++..|..+|+.=++.+-.|-.
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 33555444444332222 34778899999998766544 4667777888899999999999999988877854
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=53.02 E-value=22 Score=25.03 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=37.1
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHHccCC
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFCKEKM 80 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~~~ 80 (275)
...+..|+.+.+..++..-...--.+|...++.|. ..++.|+.+ +++.+.+.|..|+.... .+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34567788887777764322000112222333443 344566654 33444455655543321 123333445566
Q ss_pred HHHHHHHH
Q 023915 81 YILAYRTM 88 (275)
Q Consensus 81 ~~~a~~~~ 88 (275)
.+-+..++
T Consensus 85 ~~~~~~Ll 92 (201)
T 3hra_A 85 TEILAYML 92 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55443333
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.53 E-value=68 Score=23.69 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 184 NLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 184 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
++...+|..|...|+--....|-.--..++...|++.+|.++|+.=.+++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46666777777776655444332222233345677777777777666665555
No 327
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=52.31 E-value=42 Score=24.88 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=7.7
Q ss_pred hhhhcCcHHHHHHHH
Q 023915 4 AFCRGGCFEEAKQLA 18 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~ 18 (275)
..+..|+.+-+..++
T Consensus 9 ~A~~~g~~~~v~~Ll 23 (261)
T 2xai_A 9 EAAIHGHQLSLRNLI 23 (261)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 445566655444443
No 328
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=52.15 E-value=90 Score=25.01 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcCC-C-hhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCChhhHH
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSESI-S-HPAIKKFASAFVRLGN--INLVNDVMKAIHATGYRIDQGIFH 206 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~y~ 206 (275)
....+|.-|...|++++|...++++.... . +.....++......++ -+.+..++..+...|+-+......
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 45778999999999999999999976521 1 1222333333333332 356666777777766544444333
No 329
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=51.90 E-value=15 Score=20.61 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 023915 47 ESVMHVMRKLDELAISPDYNTFHILIKYF 75 (275)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 75 (275)
++|.+.|-+|.+..-.++..||.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554433333444555555554
No 330
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=51.80 E-value=23 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=14.3
Q ss_pred HHHHHHhccchHHHHHHHHHhh
Q 023915 141 ILHILISGKLLKDAYVVVKDNS 162 (275)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~ 162 (275)
.+..|.+.|.+++|.++++..-
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHccchHHHHHHHHHHh
Confidence 3446667777777777777643
No 331
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=51.41 E-value=43 Score=21.04 Aligned_cols=29 Identities=7% Similarity=0.138 Sum_probs=13.0
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 023915 50 MHVMRKLDELAISPDYNTFHILIKYFCKE 78 (275)
Q Consensus 50 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 78 (275)
.++.+++..-|+.|+..+..-++..|...
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444444433
No 332
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.41 E-value=70 Score=23.51 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=14.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 023915 174 ASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 174 i~~~~~~~~~~~a~~~~~~m~~ 195 (275)
+..|.+.|.+++|.++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 4556667777777777766555
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=51.28 E-value=14 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=35.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcH-------HhHHHHHHHHHc--cCCHHHHHHHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDV-------VLLNSMLCAYCR--TGDMESVMHVMRKL 56 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~--~g~~~~a~~~~~~m 56 (275)
+...++.|+.+.+..+++.+...|..++. .-.+.|..++.. .|+.+-+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC
Confidence 34567888998888888888887765554 344555555432 27766666555543
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.12 E-value=59 Score=22.59 Aligned_cols=60 Identities=5% Similarity=-0.137 Sum_probs=42.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHH-H-----HHccCCHHHHHHHHHHHHH
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISP--DYNTFHILIK-Y-----FCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 93 (275)
|..-+..|-. |++-+|.++|++.=...-.| ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444 89999999999887665455 5567777777 2 3356999999999988764
No 335
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=50.85 E-value=31 Score=23.71 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=6.2
Q ss_pred hhhcCcHHHHHHHH
Q 023915 5 FCRGGCFEEAKQLA 18 (275)
Q Consensus 5 ~~~~g~~~~a~~~~ 18 (275)
.++.|+.+.+..++
T Consensus 12 A~~~g~~~~v~~ll 25 (179)
T 3f6q_A 12 QCREGNAVAVRLWL 25 (179)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34444444444443
No 336
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=50.66 E-value=27 Score=25.12 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHhchhHHHHHHHH
Q 023915 204 IFHIAIARYIAEREKKELLLKLL 226 (275)
Q Consensus 204 ~y~~li~~~~~~~~~~~~a~~l~ 226 (275)
-.+.|..+ + ..|+.+.+..++
T Consensus 174 g~t~L~~A-~-~~~~~~~v~~Ll 194 (228)
T 2dzn_A 174 GWTPLFHA-L-AEGHGDAAVLLV 194 (228)
T ss_dssp SCCHHHHH-H-HTTCHHHHHHHH
T ss_pred CCCHHHHH-H-HcCCHHHHHHHH
Confidence 34444443 3 446666444444
No 337
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.66 E-value=58 Score=22.38 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCC
Q 023915 184 NLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVV 236 (275)
Q Consensus 184 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p 236 (275)
++...+|..|...|+--....|-.--..++...|++++|.++|+.=.+++-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34666777777766554443322222223335577777777777666666555
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.06 E-value=48 Score=22.92 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=38.3
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHhccCCH
Q 023915 55 KLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRK--GHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 55 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~ 116 (275)
.+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 23 ~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455677775532 35556666666666778888887776 6566666666666666665543
No 339
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=50.05 E-value=26 Score=23.03 Aligned_cols=48 Identities=6% Similarity=-0.082 Sum_probs=26.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
.|...+..++.+-|.++++-..+.| +...|.+++-.|...=++|-+++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3444455566666666666665544 44455566666655555555443
No 340
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.01 E-value=47 Score=22.10 Aligned_cols=60 Identities=5% Similarity=0.019 Sum_probs=26.3
Q ss_pred HhhcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 56 LDELAISPDYNTFHILIKYFCKEK-MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 56 m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3344444443322 2233333333 3344555555555554444445544455555544433
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.86 E-value=29 Score=22.73 Aligned_cols=42 Identities=7% Similarity=-0.140 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 023915 52 VMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHR 93 (275)
Q Consensus 52 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (275)
+|+.+....+.|++..--.-|..+...++++.|.+++.++..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555544433444445555666666666666543
No 342
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=48.73 E-value=40 Score=25.16 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=32.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-------ChhhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISP-------DYNTFHILIKYFC--KEKMYILAYRTMVDM 91 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~t~~~li~~~~--~~~~~~~a~~~~~~m 91 (275)
.+.|..+ ++.|+.+.+..+++...+.+... |..-++.|..++. +.|+.+-+..+++.-
T Consensus 14 ~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 14 RRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred chHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3444443 56677777777777666554332 3334455555554 347776666666553
No 343
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=48.67 E-value=40 Score=20.97 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
.+++.+.+.|+- +......+-. .......+.|.++++.+..+| | ..|..++.++...|....|.-
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG--S--QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcHHHHHH
Confidence 366777776643 4444444333 001246788888888887765 3 457788888877676665543
No 344
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.37 E-value=56 Score=21.57 Aligned_cols=25 Identities=20% Similarity=-0.012 Sum_probs=15.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4456666666666666666666654
No 345
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=47.85 E-value=20 Score=20.09 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=15.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCC
Q 023915 42 RTGDMESVMHVMRKLDELAISPD 64 (275)
Q Consensus 42 ~~g~~~~a~~~~~~m~~~g~~p~ 64 (275)
..|+.+.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35677777777777776666665
No 346
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=47.34 E-value=21 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=9.3
Q ss_pred HHHHccCCHHHHHHHHHH
Q 023915 38 CAYCRTGDMESVMHVMRK 55 (275)
Q Consensus 38 ~~~~~~g~~~~a~~~~~~ 55 (275)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455565555555544
No 347
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=46.96 E-value=58 Score=21.89 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=9.4
Q ss_pred hhhhhcCcHHHHHHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGD 20 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~ 20 (275)
...++.|+.+.+..+++.
T Consensus 8 ~~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 8 HQLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 344556665555555443
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.67 E-value=1.2e+02 Score=24.98 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHh--------cCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 12 EEAKQLAGDFEA--------KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 12 ~~a~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
++...+++.... .++..+......+... ..|+..+++.+++.+..
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 444555555543 2233455556666655 36777777777777654
No 349
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=46.52 E-value=54 Score=20.83 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=25.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 176 AFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
.+...|++++|..+.+.+ ..||...|-+|-.. +.|..+++...+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~---rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCEW---HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH---HTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH---hcccHHHHHHHHHHHHhCC
Confidence 344555555555553322 24555555555432 3455555555555554444
No 350
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=46.20 E-value=22 Score=25.59 Aligned_cols=183 Identities=9% Similarity=-0.058 Sum_probs=85.9
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCh------hhHHHHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY------NTFHILIKYF 75 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~ 75 (275)
+...++.|+.+.+..+++.-......+|..-++.|.. .+..|+.+-+ +.+.+.|-.++. ..++ .+...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~g~t-~L~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW-SVSFQAHEIT----SFLLSKMENVNLDDYPDDSGWT-PFHIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHH-HHHTTCHHHH----HHHHHTCTTCCGGGCCCTTSCC-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHH-HHHcCCHHHH----HHHHhccccccccccCCCCCCC-HHHHH
Confidence 3456788888888777765433222234444444444 4556776544 444444522222 2233 34444
Q ss_pred HccCCHHHHHHHHHHHHHcC--CCCCH---HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhc
Q 023915 76 CKEKMYILAYRTMVDMHRKG--HQPEE---ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISG 148 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g--~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~ 148 (275)
+..|+.+ +++.+.+.| ..++. ...+ .+...+..|+.+-+..+++ .|..++.. .-...+...+..
T Consensus 80 ~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 150 (228)
T 2dzn_A 80 CSVGNLE----VVKSLYDRPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASV 150 (228)
T ss_dssp HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHT
T ss_pred HHcCCHH----HHHHHHhCCCCcccccCCcCCCC-HHHHHHHcCCHhHHHHHHH----cCCCccccCCCCCCHHHHHHHc
Confidence 5566655 455555666 22221 1222 3334445677665444443 33333211 111234445566
Q ss_pred cchHHHHHHHHHhhcCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 023915 149 KLLKDAYVVVKDNSESISHP--AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ 202 (275)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 202 (275)
|+.+-+..+++.-....+.. .-.+.+...+..|+.+-+..+++ +.|..|+.
T Consensus 151 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~---~~ga~~~~ 203 (228)
T 2dzn_A 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE---KYGAEYDL 203 (228)
T ss_dssp TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH---HHCCCSCC
T ss_pred CCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHH---hcCCCCCc
Confidence 77765555554431111111 11233444556677765555542 34555443
No 351
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.45 E-value=55 Score=22.22 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=28.9
Q ss_pred HhhcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCH
Q 023915 56 LDELAISPDYNTFHILIKYFCKEK-MYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (275)
Q Consensus 56 m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (275)
+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-|+.+...|-+
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4445555444322 2333333333 3444555666665555445555555555555555543
No 352
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=44.77 E-value=58 Score=20.71 Aligned_cols=52 Identities=10% Similarity=-0.036 Sum_probs=27.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhhCC
Q 023915 175 SAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTGQG 233 (275)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~ 233 (275)
..+...|++++|..+.+.+ ..||...|-+|-.. +.|..+++...+.++...|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~---rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY---RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH---HHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH---hcccHHHHHHHHHHHHhCC
Confidence 3445556666666554333 24666666555533 3455555555555555544
No 353
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=44.68 E-value=78 Score=22.64 Aligned_cols=183 Identities=11% Similarity=-0.003 Sum_probs=89.9
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHc
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA----ISPDYNTFHILIKYFCK 77 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~ 77 (275)
+...++.|+.+.+..+++.-...--.+|..-++.|..+ +..|+.+-+..+++.-.... ...|..-.+ .+...+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~ 84 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA-ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVI 84 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHH
Confidence 34567788888887776642111112344444444444 46677766665555422210 011222233 3444456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHh---------------HHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hHHH
Q 023915 78 EKMYILAYRTMVDMHRKGHQPEEEL---------------CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEK 140 (275)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ 140 (275)
.|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++ .|..++.. .-.+
T Consensus 85 ~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 85 NQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE----HGADIRAQDSLGNT 156 (232)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred cCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 67765 4445555666655421 2234444555677665544443 34333211 1123
Q ss_pred HHHHHHhccchHHHHHHHHHhhcCCC----------hh-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 023915 141 ILHILISGKLLKDAYVVVKDNSESIS----------HP-AIKKFASAFVRLGNINLVNDVMKAIH 194 (275)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~----------~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 194 (275)
.+...+..|+.+-+..+++-+.+.+. .. .-.+-+...++.|+.+-+..+++.=.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 44555677787776544444333111 00 11234555566788777766665433
No 354
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.64 E-value=27 Score=23.42 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=29.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
..++..+...+..-.|.++++.+...+..++..|.-..++.+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555665655666677777777766666666555555556655554
No 355
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=44.56 E-value=92 Score=24.55 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=32.4
Q ss_pred HHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCC
Q 023915 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESIS 166 (275)
Q Consensus 121 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 166 (275)
++++.+.+.++.|...++.-++..+++.=.++.+..+|+.....+.
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 3555666667777766777777777777778888888887766544
No 356
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=44.40 E-value=90 Score=22.76 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=20.8
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
..|..-|+.|....-.+.+..+.+.+.+.....++.....+...+.+.-+
T Consensus 160 ~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~a~~ 209 (221)
T 3ibx_A 160 AFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSE 209 (221)
T ss_dssp TTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 35666666666422112222222222222223333344555555554433
No 357
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.05 E-value=27 Score=23.08 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccc
Q 023915 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 150 (275)
++..+...+..-.|.++++.+...+...+..|.-..++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444445555666666666655555555555455555555443
No 358
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.46 E-value=2e+02 Score=26.58 Aligned_cols=236 Identities=8% Similarity=-0.050 Sum_probs=120.0
Q ss_pred hcCcHHHHHHHHHHHHhcCC-------CCcHHhHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCChhhHHH--HHHHHH
Q 023915 7 RGGCFEEAKQLAGDFEAKYD-------KYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDELAISPDYNTFHI--LIKYFC 76 (275)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~--li~~~~ 76 (275)
.+|.-+++.+++.......- .+....-.++--+++-.|. -+++.+.+..+....- +......+ |-..+.
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 34444567777666554311 1112222233223333332 2455666665554321 11111222 223345
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH--HhccCCHHHHHHHHHHHHhccccccH-HhHHHHHHHHHhccchHH
Q 023915 77 KEKMYILAYRTMVDMHRKGHQPEEELCSSLIFH--LGKMRAHSEALSVYNMLRYSKRSMCK-ALHEKILHILISGKLLKD 153 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~ 153 (275)
-.|+-+....++..+.+. .+......+..+ +.-.|+.+.+..+.+.+.....+... ..-.++--+|+-.|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 667777777777776653 233333334444 44678888888888887754222111 111233445667788777
Q ss_pred HHHHHHHhhcCCChhHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 023915 154 AYVVVKDNSESISHPAIK--KFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEWMTG 231 (275)
Q Consensus 154 a~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~~ 231 (275)
...++..+.+..+...-. .+--++...|+.+.+.+++..+.+.+ .|....-.++.-+....+..-.++.+++..+..
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777888877655544322 22334455677777788877666543 455444344433433111112447777777764
Q ss_pred CCCCCChhhHHHHHHHHHH
Q 023915 232 QGYVVDSSTRNLILKNSHL 250 (275)
Q Consensus 232 ~~~~p~~~t~~~li~~~~~ 250 (275)
.+|..+-...+.++..
T Consensus 658 ---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 658 ---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp ---CSSHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHH
Confidence 2455444444444433
No 359
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.44 E-value=93 Score=22.96 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYILAYRTMVDMHRKGHQPE 99 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (275)
+-|..-....|.-.-. .+++.++|..|...|+--... -|......+-..|++.+|..+|+.=++.+-.|-
T Consensus 114 knD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp TTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3355444444433222 357778999999988765544 467788888899999999999999888877774
No 360
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.40 E-value=85 Score=22.18 Aligned_cols=104 Identities=11% Similarity=-0.062 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhc
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAER 216 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~ 216 (275)
.-...+.++...+..+ +...+.++....++..-...+.++...+..+....+. .+.. .++...-...+.++. ..
T Consensus 97 vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~-~~ 170 (211)
T 3ltm_A 97 VRQSAAVALGQIGDER-AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLI-KALK---DEDGWVRQSAADALG-EI 170 (211)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhCcHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHH-Hh
Confidence 3344444555444432 3333333444444444444555555555543332222 2222 244444444444443 33
Q ss_pred hhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 023915 217 EKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHL 250 (275)
Q Consensus 217 ~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~ 250 (275)
+.. .+...+..+... ++...-...+.++.+
T Consensus 171 ~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 171 GGE-RVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp CSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred Cch-hHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 332 244444444332 344444444444433
No 361
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.30 E-value=1.2e+02 Score=23.98 Aligned_cols=138 Identities=10% Similarity=0.024 Sum_probs=79.5
Q ss_pred HHccCCHHHH----HHHHHHHhhcCCCCChhhHHHHHHHHHccCC--HHHHHHHHHHHH----HcCC--CCCHHhHHHHH
Q 023915 40 YCRTGDMESV----MHVMRKLDELAISPDYNTFHILIKYFCKEKM--YILAYRTMVDMH----RKGH--QPEEELCSSLI 107 (275)
Q Consensus 40 ~~~~g~~~~a----~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~----~~g~--~~~~~~~~~li 107 (275)
+.+.|+...+ .-+++.+.+.++++|......|+..+..... ++. ..+.+++. +.|- .-|+..-..+-
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 4556665554 4445667778999999888888888776643 222 33444443 3342 23455666777
Q ss_pred HHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhH-HHHHHHHHHhcCChhHH
Q 023915 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPA-IKKFASAFVRLGNINLV 186 (275)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a 186 (275)
..|.+.+++.+|..-|- .+..++...+..++..+...+...+ .+. ..-.+--|...+++..|
T Consensus 144 ~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e-------------~dlfiaRaVL~yL~l~n~~~A 206 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT-------------APLYCARAVLPYLLVANVRAA 206 (336)
T ss_dssp HHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG-------------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 88888999888877762 2334443455444444333322111 111 12234456667777777
Q ss_pred HHHHHHHHH
Q 023915 187 NDVMKAIHA 195 (275)
Q Consensus 187 ~~~~~~m~~ 195 (275)
..+++...+
T Consensus 207 ~~~~~~f~~ 215 (336)
T 3lpz_A 207 NTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665543
No 362
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.65 E-value=87 Score=22.11 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=90.0
Q ss_pred CCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 27 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
.++...-...+.++.+.+..+..-.+.+ +... +|...-...+.++.+.++.+.. ..+..+.. .++..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 3567777777777777777443333333 3332 5666666777777777765433 33333332 5777777788
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHH
Q 023915 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLV 186 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 186 (275)
+.++.+.|+.+....+. .+.. .++...-...+.++...+..+ +...+..+....++..-...+.++.+.+..+ +
T Consensus 102 ~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~ 175 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGGER-V 175 (211)
T ss_dssp HHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-H
T ss_pred HHHHHHhCcHHHHHHHH-HHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-H
Confidence 88888888754443333 3332 234445556677777766543 4555555555555555556667777776633 3
Q ss_pred HHHHHHHHH
Q 023915 187 NDVMKAIHA 195 (275)
Q Consensus 187 ~~~~~~m~~ 195 (275)
...+..+.+
T Consensus 176 ~~~L~~~l~ 184 (211)
T 3ltm_A 176 RAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 334444433
No 363
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.52 E-value=1.1e+02 Score=23.45 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=42.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 023915 174 ASAFVRLGNINLVNDVMKAIHATGYRID---QGIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHL 250 (275)
Q Consensus 174 i~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~ 250 (275)
+...+..|+.+.+..++. ..|..++ ..-.+.|..+ + ..|+.+ +.+.+.+.|..||..+ .|..+ ++
T Consensus 243 L~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~A-~-~~g~~~----iv~~Ll~~GAd~n~~~--~L~~A-~~ 310 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLA-V-ELKLKK----IAELLCKRGASTDCGD--LVMTA-RR 310 (337)
T ss_dssp HHHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHHH-H-HTTCHH----HHHHHHTTSCSSTTCC--HHHHH-HH
T ss_pred HHHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHHH-H-HcCCHH----HHHHHHHCCCCCCCCC--HHHHH-HH
Confidence 344556666665554432 2243333 2334556555 3 457665 3344456788887765 33333 44
Q ss_pred hh-HHHHHHHHhccCCCC
Q 023915 251 FG-RQLIADILSKQHMKS 267 (275)
Q Consensus 251 ~g-~~~~~~~~~~~~~~~ 267 (275)
.| .+....++..|--|.
T Consensus 311 ~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 311 NYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp TTCHHHHHHHHHTTCCC-
T ss_pred cCCHHHHHHHHHCcCCCC
Confidence 45 445555556665544
No 364
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.13 E-value=1.3e+02 Score=24.05 Aligned_cols=24 Identities=13% Similarity=0.448 Sum_probs=12.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHh
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLD 57 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~ 57 (275)
..+|.-|...|+.++|.+.++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555555555555555553
No 365
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.66 E-value=1e+02 Score=24.87 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=57.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHH
Q 023915 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNT--FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE--LCSSLIFHL 110 (275)
Q Consensus 35 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~ 110 (275)
+.+...+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+-+..+ .+.|..++.. .-.+.+...
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHH
Confidence 3445556778876555444 4566665432 23456666777887654444 4456554322 112344455
Q ss_pred hccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccchHHHHHHHHH
Q 023915 111 GKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDAYVVVKD 160 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~ 160 (275)
++.|+.+-+.-+++. |..++.. .-...+...+..|+.+.+..+++.
T Consensus 88 ~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 88 ARIGHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 566777655544443 3222110 111223344556666666666554
No 366
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.57 E-value=42 Score=22.16 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=25.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 71 LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455566677777666555555555555555555543
No 367
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.45 E-value=87 Score=21.75 Aligned_cols=53 Identities=6% Similarity=-0.035 Sum_probs=40.1
Q ss_pred HccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHH-H-----HhccCCHHHHHHHHHHHHh
Q 023915 76 CKEKMYILAYRTMVDMHRKGHQP--EEELCSSLIF-H-----LGKMRAHSEALSVYNMLRY 128 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 128 (275)
...|++-.|.+++++.-...-.+ ....|..||. . ..+.|+...|..++.....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34499999999999998765555 5556777777 2 2457999999999987764
No 368
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=41.04 E-value=1.8e+02 Score=25.15 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=43.7
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC-----CHHH----HHHHHHHHHHcCCCCCHH---hHHHHH
Q 023915 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK-----MYIL----AYRTMVDMHRKGHQPEEE---LCSSLI 107 (275)
Q Consensus 40 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-----~~~~----a~~~~~~m~~~g~~~~~~---~~~~li 107 (275)
|...-..++.++++++++....+-|...|..+|+.....- -+.+ .-.+|..|.+.++.++.. .+..++
T Consensus 459 Y~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~IL 538 (603)
T 4b8b_A 459 YSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIM 538 (603)
T ss_dssp HTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHH
Confidence 3344457788888888887766666777887777755431 1222 345777777777654332 334455
Q ss_pred HHHhc
Q 023915 108 FHLGK 112 (275)
Q Consensus 108 ~~~~~ 112 (275)
+++.+
T Consensus 539 eAlrk 543 (603)
T 4b8b_A 539 RFAKE 543 (603)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 55544
No 369
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.03 E-value=38 Score=22.70 Aligned_cols=46 Identities=9% Similarity=-0.034 Sum_probs=23.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCC
Q 023915 70 ILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (275)
.++..+...++.-.|.++++.+.+.+...+..|...-|+.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444445566666666655555555555555555544443
No 370
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.15 E-value=68 Score=20.14 Aligned_cols=59 Identities=5% Similarity=0.039 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHHH-----HhhCCCCCChhhHHHH
Q 023915 183 INLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLEW-----MTGQGYVVDSSTRNLI 244 (275)
Q Consensus 183 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~-----m~~~~~~p~~~t~~~l 244 (275)
.-.+..+.+++...|+.|+..+...++..|.+. +. + +.++.++ ....|..|+..+.+.+
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y-~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQY-GQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHH-TC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 346777888888889999998888888875432 22 2 3332222 2345888887776654
No 371
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.17 E-value=1e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=9.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCC
Q 023915 42 RTGDMESVMHVMRKLDELAISPD 64 (275)
Q Consensus 42 ~~g~~~~a~~~~~~m~~~g~~p~ 64 (275)
..|+.+.-.++.+.+.+.|..|+
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCCcchHHHHHHHHHHCCCCCC
Confidence 33444333344444444444443
No 372
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.13 E-value=1.4e+02 Score=23.28 Aligned_cols=139 Identities=9% Similarity=0.010 Sum_probs=79.0
Q ss_pred HHccCCHHHHHH----HHHHHhhcCCCCChhhHHHHHHHHHccCCHH-HHHHHHHHHH----HcCC--CCCHHhHHHHHH
Q 023915 40 YCRTGDMESVMH----VMRKLDELAISPDYNTFHILIKYFCKEKMYI-LAYRTMVDMH----RKGH--QPEEELCSSLIF 108 (275)
Q Consensus 40 ~~~~g~~~~a~~----~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-~a~~~~~~m~----~~g~--~~~~~~~~~li~ 108 (275)
+.+.|+...|-+ +.+...+.++++|......++..+.....-+ .=.++.+++. +.|- .-++.....+-.
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 455677655544 5666777899999988888888776642111 1233444443 3332 235667778888
Q ss_pred HHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhc---cchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhH
Q 023915 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG---KLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINL 185 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 185 (275)
.|.+.|++.+|..-|-. +..-+...+..++..+... |...++--. ..-.+--|...++...
T Consensus 143 ~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf------------~~RaVL~yL~l~n~~~ 206 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF------------FSRLVFNYLFISNISF 206 (312)
T ss_dssp HHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH------------HHHHHHHHHHTTBHHH
T ss_pred HHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH------------HHHHHHHHHHhcCHHH
Confidence 88999999988776641 1111223344443333322 222221111 1122344567788888
Q ss_pred HHHHHHHHH
Q 023915 186 VNDVMKAIH 194 (275)
Q Consensus 186 a~~~~~~m~ 194 (275)
|..+++...
T Consensus 207 A~~~~~~f~ 215 (312)
T 2wpv_A 207 AHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888754
No 373
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=36.58 E-value=98 Score=24.20 Aligned_cols=143 Identities=8% Similarity=0.039 Sum_probs=90.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhc-C----CCCChhhHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDEL-A----ISPDYNTFHI---LIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSS 105 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~-g----~~p~~~t~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (275)
|.+...+.-.-+-++|..+|..+... + ..|+...... .+..+.+.-++ +++..+.+.|+.|...++..
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W 228 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLEEHEIGPSLYAAPW 228 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTSHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCChHHHHHHH
Confidence 33333333333567889988887643 2 3344332222 22333333333 47788889999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHH----HhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhc
Q 023915 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL----ISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRL 180 (275)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 180 (275)
++..|.+.=.++.+..+|+.+...|...-..+..+++... ....+.++....+.......+......++.-....
T Consensus 229 ~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 229 FLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 9999999888999999999998877664333333444332 33457888888888755444444555555444333
No 374
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.84 E-value=1.1e+02 Score=21.09 Aligned_cols=51 Identities=12% Similarity=-0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHHhcccccc
Q 023915 84 AYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC 134 (275)
Q Consensus 84 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 134 (275)
+..+|..|...|+-.. ..-|..-...+-..|++.+|.++|+.-.+.+-.|.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5666666666665433 33455555666666777777777766665555553
No 375
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=35.01 E-value=37 Score=23.07 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=9.3
Q ss_pred hhhhhcCcHHHHHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAG 19 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~ 19 (275)
...++.|+++.+..+++
T Consensus 7 ~~A~~~g~~~~v~~ll~ 23 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLR 23 (172)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 34455666665555544
No 376
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=34.21 E-value=88 Score=19.69 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=5.4
Q ss_pred ccchHHHHHHHHHh
Q 023915 148 GKLLKDAYVVVKDN 161 (275)
Q Consensus 148 ~~~~~~a~~~~~~~ 161 (275)
.|..+.|..+++.+
T Consensus 56 ~G~~~aa~~LL~~L 69 (100)
T 2lwd_A 56 KGMMAGAEKLVECL 69 (100)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHH
Confidence 33333333333333
No 377
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=34.18 E-value=43 Score=18.33 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=22.0
Q ss_pred hhhhcCcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccC
Q 023915 4 AFCRGGCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG 44 (275)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 44 (275)
.|.+..=.++...+.++=+..|..+...+|++..+.+...|
T Consensus 5 ~Yvs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 5 AYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred eehhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 34444445555555555555565555555555555554444
No 378
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.69 E-value=99 Score=20.15 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 023915 17 LAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 17 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
+|+.+....+.|++..--.-|..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666766666555556666788999999999988765
No 379
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=33.19 E-value=1.5e+02 Score=22.11 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=5.8
Q ss_pred hHHHHHHHHh
Q 023915 102 LCSSLIFHLG 111 (275)
Q Consensus 102 ~~~~li~~~~ 111 (275)
.|..-|+.|.
T Consensus 178 ~Y~~WI~~Y~ 187 (248)
T 3no6_A 178 VTSKWFQFYS 187 (248)
T ss_dssp TTHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4555566665
No 380
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.11 E-value=44 Score=24.12 Aligned_cols=141 Identities=10% Similarity=0.036 Sum_probs=65.3
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCCcHH---hHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKYDVV---LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF--HILIKYFC 76 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~ 76 (275)
+...+..|+.+-+.. +.+.|..++.. .++. +...+..|+.+-+. .+.+.|..++.... .+.+...+
T Consensus 15 L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVDICHM----LVQAGANIDTCSEDQRTP-LMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHHHHHH----HHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHHHHHH----HHHcCCCcCccCCCCCCH-HHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHH
Confidence 345667787765444 44456554432 2333 44445667765443 44455655443221 23444555
Q ss_pred ccCCHHHHHHHHHHHHHcC-CCCC---HHhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccc
Q 023915 77 KEKMYILAYRTMVDMHRKG-HQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKL 150 (275)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g-~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~ 150 (275)
..|+.+- ++.+.+.| ..++ ....+ .+...++.|+.+-+..++ +.|..++.. .-...+...+..|+
T Consensus 86 ~~~~~~~----~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 86 KKGHYEV----VQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLL----SKGSDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp HTTCHHH----HHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HcCCHHH----HHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHCCC
Confidence 6676654 44445554 3332 22222 333444556665444333 333332211 11123344455566
Q ss_pred hHHHHHHHHH
Q 023915 151 LKDAYVVVKD 160 (275)
Q Consensus 151 ~~~a~~~~~~ 160 (275)
.+-+..+++.
T Consensus 157 ~~~~~~Ll~~ 166 (237)
T 3b7b_A 157 VDIAEILLAA 166 (237)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHc
Confidence 6655555443
No 381
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.96 E-value=1.3e+02 Score=25.81 Aligned_cols=85 Identities=8% Similarity=0.028 Sum_probs=34.6
Q ss_pred hHHHHHHHHHc--cCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 023915 32 LLNSMLCAYCR--TGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIF 108 (275)
Q Consensus 32 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (275)
-|..-|..+.. ..+.........++..+ ++. +..--.-++..|.+.|-.+.|.++++.+-..-+. +...| ..+.
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr-~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~ 557 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPH-YPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIA 557 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHH
Confidence 34444444443 33444555555555543 222 2234566777788888888888887777644322 22344 5666
Q ss_pred HHhccCCHHHH
Q 023915 109 HLGKMRAHSEA 119 (275)
Q Consensus 109 ~~~~~g~~~~a 119 (275)
.|.|+|+++.+
T Consensus 558 ~f~rA~~~~~V 568 (570)
T 3f3f_C 558 NFSRAGKYELV 568 (570)
T ss_dssp -----------
T ss_pred HHHHcCChhhc
Confidence 77777777654
No 382
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=32.81 E-value=68 Score=20.94 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhhc----CCChhHHHHHHHHH
Q 023915 151 LKDAYVVVKDNSE----SISHPAIKKFASAF 177 (275)
Q Consensus 151 ~~~a~~~~~~~~~----~~~~~~~~~li~~~ 177 (275)
+++|.+.+..+.+ ...|..||.++..+
T Consensus 43 y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 43 FMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 4444444444433 12344555555443
No 383
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.73 E-value=2.9e+02 Score=25.30 Aligned_cols=89 Identities=7% Similarity=-0.097 Sum_probs=43.1
Q ss_pred HHHHHHHHccCC---HHHHHHHHHHHhhc----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 023915 34 NSMLCAYCRTGD---MESVMHVMRKLDEL----AISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSL 106 (275)
Q Consensus 34 ~~li~~~~~~g~---~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (275)
..++...|+.|. .+.|.+.|+..... .+.||... .+...-.+.|+-+.-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345555555554 33455666655432 14454432 2222233445544444555555442 223333456
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 023915 107 IFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~m~ 127 (275)
+.+++...+.....++++...
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 666666666666555555544
No 384
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=32.54 E-value=1.5e+02 Score=21.79 Aligned_cols=180 Identities=9% Similarity=-0.028 Sum_probs=81.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHh
Q 023915 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNT--FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEEL--CSSLIFHLG 111 (275)
Q Consensus 36 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 111 (275)
.+...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+- .+.+.+.|..++... -.+.+...+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLI----SQGWAVNIITADHVSPLHEACLGGHLSC----VKILLKHGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSSCCCTTCCCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 344556677775544444 4565555432 1234445556677654 444455666554321 123334444
Q ss_pred ccCCHHHHHHHHHHHHhccccccHH-hHHHHHHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCChhHHHHH
Q 023915 112 KMRAHSEALSVYNMLRYSKRSMCKA-LHEKILHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGNINLVNDV 189 (275)
Q Consensus 112 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 189 (275)
..|+.+-+..++ +.+..++.. ...+.+...+..|+.+-+..+++.-....... .-.+.+...+..|+.+-+..+
T Consensus 78 ~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 78 VSGSWDCVNLLL----QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp HHTCHHHHHHHH----HTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHH----HCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 556665444443 333332211 11223444556677665555555422211111 111333444556666544444
Q ss_pred HHHHHHcCCCCCh--hhHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCC
Q 023915 190 MKAIHATGYRIDQ--GIFHIAIARYIAEREKKELLLKLLEWMTGQGYVVD 237 (275)
Q Consensus 190 ~~~m~~~g~~p~~--~~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~ 237 (275)
.+.|..++. .-.+.|..+ + ..++.+.+. .+.+.|..|+
T Consensus 154 ----l~~g~~~~~~~~g~t~Lh~A-~-~~~~~~~v~----~Ll~~gad~~ 193 (261)
T 2xai_A 154 ----LESGADVNQGKGQDSPLHAV-A-RTASEELAC----LLMDFGADTQ 193 (261)
T ss_dssp ----HHHTCCTTCCBTTBCHHHHH-H-HHTCHHHHH----HHHHTTCCTT
T ss_pred ----HHcCCCCCCCCCCCChHHHH-H-HcCCHHHHH----HHHHcCCCCC
Confidence 344555443 223444433 3 446655333 3334455544
No 385
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=31.99 E-value=1.2e+02 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=10.1
Q ss_pred HHHHccCCHHHHHHHHHH
Q 023915 38 CAYCRTGDMESVMHVMRK 55 (275)
Q Consensus 38 ~~~~~~g~~~~a~~~~~~ 55 (275)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRK 24 (172)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 344566777666555543
No 386
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.75 E-value=2.6e+02 Score=24.33 Aligned_cols=227 Identities=8% Similarity=-0.100 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhcCCCCcH---HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 10 CFEEAKQLAGDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
+.+.|..+|......+.-.+. ..+..+.......+...++...+..... ..++.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--RSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--cCCChHHHHHHHHHHHHCCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHH---------------------------hccccccHHhHH
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR---------------------------YSKRSMCKALHE 139 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---------------------------~~~~~~~~~~~~ 139 (275)
.|+.|.. .........--+-.++...|+.++|..+|..+. .....+....--
T Consensus 307 ~~~~l~~-~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 385 (618)
T 1qsa_A 307 WLARLPM-EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM 385 (618)
T ss_dssp HHHHSCT-TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred HHHHccc-cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHH
Q ss_pred HHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHHhch
Q 023915 140 KILHILISGKLLKDAYVVVKDNSESISHPAIKKFASAFVRLGNINLVNDVMKAIHATGYR--IDQGIFHIAIARYIAERE 217 (275)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~y~~li~~~~~~~~ 217 (275)
..+..+...|....|...+.......++.....+.......|..+.+..........+.. .-...|..++..+. +.-
T Consensus 386 ~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a-~~~ 464 (618)
T 1qsa_A 386 ARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYT-SGK 464 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHH-TTS
T ss_pred HHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHH-HHc
Q ss_pred hHHHHHHHHHHHhhCCCCCChhh
Q 023915 218 KKELLLKLLEWMTGQGYVVDSST 240 (275)
Q Consensus 218 ~~~~a~~l~~~m~~~~~~p~~~t 240 (275)
.++..+-.---..++++.|+..+
T Consensus 465 gv~~~ll~Ai~~~ES~f~p~a~S 487 (618)
T 1qsa_A 465 EIPQSYAMAIARQESAWNPKVKS 487 (618)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCBC
T ss_pred CCCHHHHHHHHHHhCCCCCCCcC
No 387
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=31.48 E-value=80 Score=19.47 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHH-----HhchhHHHHHHHHHHHhhC
Q 023915 187 NDVMKAIHATGYRIDQGIFHIAIARYI-----AEREKKELLLKLLEWMTGQ 232 (275)
Q Consensus 187 ~~~~~~m~~~g~~p~~~~y~~li~~~~-----~~~~~~~~a~~l~~~m~~~ 232 (275)
..++.+.++.| |+..+|..+-..+- .-..+|.+.++||+.+...
T Consensus 42 R~IL~~cQ~~G--~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 42 RVILTMCQEQG--AQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp HHHHHHHHHTT--SCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHhcC--CChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcc
Confidence 44666667767 44556665555531 0135677777777776544
No 388
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.45 E-value=94 Score=20.10 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHhhHHHHHHHHhccCCCC
Q 023915 220 ELLLKLLEWMTGQGYVVD-SSTRNLILKNSHLFGRQLIADILSKQHMKS 267 (275)
Q Consensus 220 ~~a~~l~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~~~~~~~~~~~~ 267 (275)
+.+.+++..-... .+. ..|...|++++.+.|+...++.+...+.+.
T Consensus 54 eq~~~mL~~W~~~--~g~~~Atv~~L~~aL~~~~r~diae~l~~~ie~~ 100 (118)
T 2of5_H 54 EQIRHMLFSWAER--QAGQPGAVGLLVQALEQSDRQDVAEEVRAVLELG 100 (118)
T ss_dssp HHHHHHHHHHHHT--TSSCSSHHHHHHHHHHHTTCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHcCcHHHHHHHHHHHhhh
Confidence 3444444444333 111 356666666766666666666655554433
No 389
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=31.10 E-value=1.2e+02 Score=22.72 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=33.1
Q ss_pred HHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHHhchh
Q 023915 142 LHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQ--GIFHIAIARYIAEREK 218 (275)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~y~~li~~~~~~~~~ 218 (275)
+...+..|+.+-+..+++.-....... .-.+.+...+..|+.+-+..+ .+.|..++. .-.+.|..+ + ..++
T Consensus 161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L----l~~ga~~~~~~~g~t~L~~A-~-~~~~ 234 (285)
T 3d9h_A 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL----LESGADVNQGKGQDSPLHAV-V-RTAS 234 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTBCHHHHH-H-HTTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH----HHCCCCCCCCCCCCCHHHHH-H-HcCC
Confidence 334445566665555554322110000 111233444555666544433 444544442 233444444 3 4566
Q ss_pred HHHHHHH
Q 023915 219 KELLLKL 225 (275)
Q Consensus 219 ~~~a~~l 225 (275)
.+.+..+
T Consensus 235 ~~~v~~L 241 (285)
T 3d9h_A 235 EELACLL 241 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6543333
No 390
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=29.34 E-value=3.3e+02 Score=24.90 Aligned_cols=141 Identities=10% Similarity=-0.003 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCC---HHHHHHHHHHHHhcc----ccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChhHHHHHHH
Q 023915 103 CSSLIFHLGKMRA---HSEALSVYNMLRYSK----RSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHPAIKKFAS 175 (275)
Q Consensus 103 ~~~li~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 175 (275)
-..++...|+.|. .+.|.+.|+.....+ ++|+. -..+. +.+- |.-++-..+++.........--..++.
T Consensus 683 r~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~l--r~~vy-~~~~-g~~~~~~~l~~~y~~~~~~~ek~~ll~ 758 (897)
T 2xdt_A 683 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDV--TLAVF-AVGA-QSTEGWDFLYSKYQFSLSSTEKSQIEF 758 (897)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHH--HHHHH-HHHT-TSHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcch--hhhEE-EEec-CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3446666677776 567788888766542 23332 12221 1112 554444445555555555555678889
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHHHHHHH----HHhhCCCCCChhhHHHHHHHHH
Q 023915 176 AFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELLLKLLE----WMTGQGYVVDSSTRNLILKNSH 249 (275)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~----~m~~~~~~p~~~t~~~li~~~~ 249 (275)
+++...+.+...++++.....+........ .++.+...+..-.+.+.+.+. .+.+. +.++..++..++.+..
T Consensus 759 aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~-~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~i~~~~ 834 (897)
T 2xdt_A 759 ALCRTQNKEKLQWLLDESFKGDKIKTQEFP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTT 834 (897)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSSSCGGGHH-HHHHHHHTSTTTHHHHHHHHHHTHHHHHHH-HCTTCHHHHHHHHHTT
T ss_pred HhccCCCHHHHHHHHHHHhCCCCCcHHHHH-HHHHHHHcChhhHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHH
Confidence 999999999888888887753322223333 344443323222334444443 22221 2233455666776654
No 391
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=29.11 E-value=1.4e+02 Score=20.46 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=13.1
Q ss_pred chHHHHHHHHHhhc----CCChhHHHHHHHHH
Q 023915 150 LLKDAYVVVKDNSE----SISHPAIKKFASAF 177 (275)
Q Consensus 150 ~~~~a~~~~~~~~~----~~~~~~~~~li~~~ 177 (275)
.+++|.+.+..+.+ ...|..||.++..+
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 34455555554443 22344566555443
No 392
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=28.97 E-value=1.8e+02 Score=25.02 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHhchhHHHH
Q 023915 169 AIKKFASAFVRLGNINLVNDVMKAIHATGYRIDQGIFHIAIARYIAEREKKELL 222 (275)
Q Consensus 169 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~~~~~~~a 222 (275)
....++..|.+.|-.+.|.++++.+-.+-+. +...|.+|. .|. ++|+++.+
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~geAL~-~f~-rA~~~~~V 568 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNIIESIA-NFS-RAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHHHHHH-HHH-HcCChhhc
Confidence 5566777888888888888887776654322 344565544 343 66766654
No 393
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.67 E-value=1.7e+02 Score=21.22 Aligned_cols=64 Identities=9% Similarity=0.174 Sum_probs=43.0
Q ss_pred HHHHHHHHHc---cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCC
Q 023915 33 LNSMLCAYCR---TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-----YILAYRTMVDMHRKGHQ 97 (275)
Q Consensus 33 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-----~~~a~~~~~~m~~~g~~ 97 (275)
+--+|+++.| -.+++.|+-.+-+|.+.| .|....=..++-+.-.-|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3345555554 578999999999999999 7766655566666555443 33456666666677753
No 394
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=28.25 E-value=1.8e+02 Score=21.31 Aligned_cols=50 Identities=6% Similarity=0.107 Sum_probs=23.5
Q ss_pred HhHHHHHHHHhccCCHHHHHH-HHHHHHhccccccHHhHHHHHHHHHhccchH
Q 023915 101 ELCSSLIFHLGKMRAHSEALS-VYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (275)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 152 (275)
..|..-|+.|. ..+..+.. +.+.+.+.....++.....+...+.+.-+++
T Consensus 158 ~~y~~WI~~y~--~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~a~~lE 208 (229)
T 4fn6_A 158 KDTAKWFDFYS--TEMDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHE 208 (229)
T ss_dssp STHHHHHHHHT--TTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 35677777777 33333332 2223322222334444555555555544443
No 395
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.71 E-value=65 Score=17.96 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHhhcC-CCCCh
Q 023915 43 TGDMESVMHVMRKLDELA-ISPDY 65 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~~g-~~p~~ 65 (275)
.-+++.|...|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457899999999998765 55544
No 396
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=27.59 E-value=1.2e+02 Score=19.78 Aligned_cols=43 Identities=7% Similarity=-0.024 Sum_probs=24.4
Q ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 153 DAYVVVKDNSE-SISHPAIKKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 153 ~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
.+.+++..... .+...++..|+.++.++|.-+-|..+-..+..
T Consensus 48 q~~~mL~~W~~r~G~~ATv~~L~~AL~~i~~~diAe~Ie~~l~~ 91 (122)
T 3ezq_B 48 RVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEVQQA 91 (122)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444443332 34445677777777777776666666555444
No 397
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=27.39 E-value=2.3e+02 Score=22.31 Aligned_cols=218 Identities=4% Similarity=-0.001 Sum_probs=95.7
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCCHH
Q 023915 6 CRGGCFEEAKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELA--ISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~ 82 (275)
.+.++.++...+|+++...-... .-.--|-++.-+...+..+.-..+++.+...= +.-+... ..++.........+
T Consensus 45 l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G-~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 45 LERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYG-CRVIQKALESISSD 123 (351)
T ss_dssp HHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTH-HHHHHHHHHHSCHH
T ss_pred HhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHh-HHHHHHHHHhCCHH
Confidence 34456666667777765421000 00112566666667777666666666654210 0111111 12223233333333
Q ss_pred HHHHHHHHHHHcCCCCCHHhH------HHHHHHHhccCCHHHHHHHHHHHHhccccccHHhH-HHHHHHHHhccchHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELC------SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALH-EKILHILISGKLLKDAY 155 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~ 155 (275)
.-..++++ +.|+.... |.++..+...+..+.-..+++.+...-.......| ..+++.+......+.-.
T Consensus 124 ~~~~i~~e-----l~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~ 198 (351)
T 3gvo_A 124 QQSEMVKE-----LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTL 198 (351)
T ss_dssp HHHHHHGG-----GTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHH-----hhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHH
Confidence 32333332 23333211 34566665555555555555554332111111111 23555555555555555
Q ss_pred HHHHHhhcCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHHHHhchhHHHHHHHHHHH
Q 023915 156 VVVKDNSESIS----HPAIKKFASAFVRLGNINLVNDVMKAIHAT--GYRIDQGIFHIAIARYIAEREKKELLLKLLEWM 229 (275)
Q Consensus 156 ~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m 229 (275)
.+++++..... .+.=|-++..+...+..+.-..+++.+... .+.-+...-+.+-.. +.. +..+.-..+++++
T Consensus 199 ~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~-l~~-~~~~~r~~ii~el 276 (351)
T 3gvo_A 199 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKC-VTH-ASRAERALLIDEV 276 (351)
T ss_dssp HHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHH-HHH-SCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHh-CCHHHHHHHHHHH
Confidence 55555543111 112244566666777766666666554321 011122233434333 333 3333455666666
Q ss_pred hh
Q 023915 230 TG 231 (275)
Q Consensus 230 ~~ 231 (275)
..
T Consensus 277 ~~ 278 (351)
T 3gvo_A 277 CC 278 (351)
T ss_dssp HS
T ss_pred hc
Confidence 54
No 398
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.28 E-value=57 Score=24.25 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=36.5
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhcCCCC-------cHHhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 023915 2 ISAFCRGGCFEEAKQLAGDFEAKYDKY-------DVVLLNSMLCAYC--RTGDMESVMHVMRKL 56 (275)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~~~~~li~~~~--~~g~~~~a~~~~~~m 56 (275)
+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 345677888888888888877666433 3445666776664 357777666666553
No 399
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=27.17 E-value=79 Score=16.96 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=8.4
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 023915 10 CFEEAKQLAGDFEAKYDK 27 (275)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~ 27 (275)
++..|.++++.+.+.|-.
T Consensus 8 Dv~RaiELle~lq~sgev 25 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEV 25 (53)
T ss_dssp HHHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 444444444444444433
No 400
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=27.07 E-value=1.5e+02 Score=20.21 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=5.6
Q ss_pred hccchHHHHHHHH
Q 023915 147 SGKLLKDAYVVVK 159 (275)
Q Consensus 147 ~~~~~~~a~~~~~ 159 (275)
..|+.+-+..+++
T Consensus 112 ~~g~~~~v~~Ll~ 124 (169)
T 4gpm_A 112 ENGHKEVVKLLIS 124 (169)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4444444444433
No 401
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=27.06 E-value=1.7e+02 Score=23.67 Aligned_cols=44 Identities=2% Similarity=-0.108 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 130 (275)
+++.+.+.|+.|...++.-++..|.+.=.++.+..+|+.+...|
T Consensus 218 L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 55556667788877777888888887777888888888776654
No 402
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=27.04 E-value=87 Score=23.22 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCCC-------CChhhHHHHHHHHHccC---------CHHHHHHHHHHHHHcCCCC-CHHhHHHHHH
Q 023915 46 MESVMHVMRKLDELAIS-------PDYNTFHILIKYFCKEK---------MYILAYRTMVDMHRKGHQP-EEELCSSLIF 108 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~-------p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~~-~~~~~~~li~ 108 (275)
.+.|..++.+|--..++ -...-|..+..+|.+.| +.+....+++-.++.|++. =+..|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 57788888888654321 23456888889998886 4455677777777777642 3346777776
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~ 127 (275)
--.-.-+++++.++|..+.
T Consensus 227 k~TG~TrpedV~~ll~~~K 245 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTK 245 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 6555667788877777764
No 403
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=27.01 E-value=1.2e+02 Score=19.43 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=14.1
Q ss_pred hhhcCcHHHHHHHHHHHHh
Q 023915 5 FCRGGCFEEAKQLAGDFEA 23 (275)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~ 23 (275)
.++.|++++|.+.+++..+
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4577888888888777654
No 404
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=26.55 E-value=91 Score=23.41 Aligned_cols=82 Identities=7% Similarity=0.028 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhcCCC-------CChhhHHHHHHHHHccC---------CHHHHHHHHHHHHHcCCCC-CHHhHHHHHH
Q 023915 46 MESVMHVMRKLDELAIS-------PDYNTFHILIKYFCKEK---------MYILAYRTMVDMHRKGHQP-EEELCSSLIF 108 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~-------p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~~-~~~~~~~li~ 108 (275)
.+.|..++.+|--..++ -...-|..+..+|.+.| +.+....+++-.++.|++. =+..|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 57788888888654321 23456788888888876 4455677777777887642 3346777776
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~~~m~ 127 (275)
--.-.-+++++.++|..+.
T Consensus 250 k~TG~TrpedV~~ll~~~K 268 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVK 268 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 6555567777777777665
No 405
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.39 E-value=1.9e+02 Score=21.11 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=47.0
Q ss_pred cHHhHHHHHHHHHc---cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCC
Q 023915 29 DVVLLNSMLCAYCR---TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-----YILAYRTMVDMHRKGHQ 97 (275)
Q Consensus 29 ~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~-----~~~a~~~~~~m~~~g~~ 97 (275)
+...+--+|+++.| -.+++.|+-.+-+|.+.|-.|....=..++-+.-.-|. +..|...++.....|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33445556777765 47999999999999999988877766666666554443 34466666777777753
No 406
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=26.06 E-value=1.3e+02 Score=20.58 Aligned_cols=146 Identities=8% Similarity=-0.015 Sum_probs=63.6
Q ss_pred cHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---h
Q 023915 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD---YNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE---L 102 (275)
Q Consensus 29 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~ 102 (275)
|..-++.|.. .+..|+.+.+..+++. |..++ .... +.+...+..|+.+-+. .+.+.|..++.. -
T Consensus 32 d~~g~t~L~~-A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g 101 (192)
T 2rfm_A 32 DSYNRTPLMV-ACMLGMENAIDKLVEN----FDKLEDKDIEGS-TALIWAVKNNRLGIAE----KLLSKGSNVNTKDFSG 101 (192)
T ss_dssp CTTCCCHHHH-HHHHTCGGGHHHHHHH----HCCTTCCCTTSC-CHHHHHHHTTCHHHHH----HHHHHTCCTTCCCTTS
T ss_pred CCCCCCHHHH-HHHcCCHHHHHHHHHh----ccccccccccCc-cHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCC
Confidence 3333344433 3455777666655554 22222 2222 3344455667766443 444445544332 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhccccccHH--hHHHHHHHHHhccchHHHHHHHHHhhcCCChh--HHHHHHHHHH
Q 023915 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDAYVVVKDNSESISHP--AIKKFASAFV 178 (275)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~ 178 (275)
.+ .+...+..|+.+-+.-++ +.|..++.. .-.+.+...+..|+.+-+..+++.-.. .... .-.+-+...+
T Consensus 102 ~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~ 175 (192)
T 2rfm_A 102 KT-PLMWSIIFGYSEMSYFLL----EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASAR 175 (192)
T ss_dssp CC-HHHHHHHHTCHHHHHHHH----HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHH
T ss_pred Cc-HHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHH
Confidence 23 333344556666444433 333333211 111233444556676655555554211 1111 0112234445
Q ss_pred hcCChhHHHHHH
Q 023915 179 RLGNINLVNDVM 190 (275)
Q Consensus 179 ~~~~~~~a~~~~ 190 (275)
..|+.+-+.-++
T Consensus 176 ~~~~~~~v~~Ll 187 (192)
T 2rfm_A 176 IFGRQEVIKIFT 187 (192)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCcHHHHHHHH
Confidence 566665554443
No 407
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.86 E-value=2.1e+02 Score=23.76 Aligned_cols=32 Identities=13% Similarity=0.363 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 023915 170 IKKFASAFVRLGNINLVNDVMKAIHATGYRID 201 (275)
Q Consensus 170 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 201 (275)
.+.+.+.|.+.++...+..+++.+...+..|+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~ 210 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAH 210 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcC
Confidence 46788999999999999999999988776443
No 408
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.67 E-value=2.5e+02 Score=22.13 Aligned_cols=50 Identities=6% Similarity=-0.103 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCCH--HhHHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 023915 82 ILAYRTMVDMHRKGHQPEE--ELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (275)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 131 (275)
.+.+++-..+....++|.- .+...-|..+.|.+++..|-.+-+++.+.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4444444444444444432 2445556666666666666666666665544
No 409
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=25.64 E-value=34 Score=25.86 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=38.4
Q ss_pred HHHHhccchHHHHHHHHHhhcC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCh---hhHHHHHHHHHHhc
Q 023915 143 HILISGKLLKDAYVVVKDNSES--ISHPAIKKFASAFVRLGNINLVNDVMKAIHA-TGYRIDQ---GIFHIAIARYIAER 216 (275)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~---~~y~~li~~~~~~~ 216 (275)
...+..|+.+-+..+++.-... .+..-. +-+...+..|+.+-+..+ .+ .|..++. .-.+.|..+ + ..
T Consensus 188 h~A~~~g~~~~v~~Ll~~gad~n~~d~~G~-TpLh~A~~~g~~~iv~~L----l~~~gad~~~~d~~g~TpL~~A-~-~~ 260 (276)
T 4hbd_A 188 MLAVSHGRVDVVKALLACEADVNVQDDDGS-TALMCACEHGHKEIAGLL----LAVPSCDISLTDRDGSTALMVA-L-DA 260 (276)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHH----HTSTTCCTTCCCTTSCCHHHHH-H-HH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHH----HhcCCCCCcCcCCCCCCHHHHH-H-Hc
Confidence 3344566666555555542211 111111 223333455665544444 34 4554443 344555544 3 55
Q ss_pred hhHHHHHHHHHHH
Q 023915 217 EKKELLLKLLEWM 229 (275)
Q Consensus 217 ~~~~~a~~l~~~m 229 (275)
|+.+-+..+++.+
T Consensus 261 g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 261 GQSEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcc
Confidence 8888777776654
No 410
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=25.45 E-value=60 Score=20.74 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHHhccCCCCC
Q 023915 219 KELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADILSKQHMKSK 268 (275)
Q Consensus 219 ~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~~~~~~~~~ 268 (275)
.+.+.+++..-... .....|...|+.++.+.|+...++.+.....++.
T Consensus 58 ~eq~~~mL~~W~~~--~g~~AT~~~L~~aL~~i~r~diae~l~~~~~~~~ 105 (111)
T 2yqf_A 58 LEQSVALLNLWVIR--EGQNANMENLYTALQSIDRGEIVNMLEGSGRQSR 105 (111)
T ss_dssp HHHHHHHHHHHHHH--HTTSCCHHHHHHHHHHTTCCHHHHHHSCCCCCCC
T ss_pred HHHHHHHHHHHHHh--hCCCchHHHHHHHHHHcCcHHHHHHHHHhccCcc
Confidence 44455555443332 1123478899999999998888888887765554
No 411
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.91 E-value=2e+02 Score=20.84 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhcCCChh--HH-----HHHHHHHHhcCChhHHHHHHHHHHH
Q 023915 151 LKDAYVVVKDNSESISHP--AI-----KKFASAFVRLGNINLVNDVMKAIHA 195 (275)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~--~~-----~~li~~~~~~~~~~~a~~~~~~m~~ 195 (275)
++.|+.+|+.+....+.. .. ...+..|.+.|.+++|.++++..-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 667888888887755533 12 2345789999999999999998554
No 412
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=24.70 E-value=4.1e+02 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=11.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 023915 104 SSLIFHLGKMRAHSEALSVYNMLR 127 (275)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~m~ 127 (275)
..++.+++...+.....++++...
T Consensus 754 ~~ll~aL~c~~~~~~l~~~L~~~~ 777 (897)
T 2xdt_A 754 SQIEFALCRTQNKEKLQWLLDESF 777 (897)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHh
Confidence 445555555555555444444443
No 413
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=24.58 E-value=2.4e+02 Score=22.08 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcC---CC---CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 11 FEEAKQLAGDFEAKY---DK---YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g---~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
-++|.-+|..+...- .. |.....-..+..+.+.-++ +++..+.+.|+.|...++.=++..+++.=.++.+
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~ 263 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHH
Confidence 456777777776531 12 2222333344444444343 5777788889999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HH--hHHHHHHHH----hccCCHHHHHHHHHHHH
Q 023915 85 YRTMVDMHRKGHQPE-EE--LCSSLIFHL----GKMRAHSEALSVYNMLR 127 (275)
Q Consensus 85 ~~~~~~m~~~g~~~~-~~--~~~~li~~~----~~~g~~~~a~~~~~~m~ 127 (275)
..+|+.+...|.... .. ..-+++..+ ....++++.+.+++.+.
T Consensus 264 lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 264 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 999999998875543 22 223334333 23578888888776543
No 414
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=24.54 E-value=3.4e+02 Score=26.33 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHcCCCC-Chh-hHHHHHHHHHHhchhHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhhHHHHHHHH
Q 023915 183 INLVNDVMKAIHATGYRI-DQG-IFHIAIARYIAEREKKELLLKLLEWMTGQGYVVDSSTRNLILKNSHLFGRQLIADIL 260 (275)
Q Consensus 183 ~~~a~~~~~~m~~~g~~p-~~~-~y~~li~~~~~~~~~~~~a~~l~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~~~~~ 260 (275)
.+...+.|.++.+- +.+ |.. ..-++-+++ ..+++..|++++.++.+.. |+...|..+++.+...|....+...
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~--~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w~h~~~~~ 1339 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAY--AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGHEHIRTVI 1339 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHH--HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHH--HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555666666552 111 222 222233332 4578888999999887764 7888888888888888855555444
Q ss_pred h
Q 023915 261 S 261 (275)
Q Consensus 261 ~ 261 (275)
.
T Consensus 1340 ~ 1340 (1354)
T 3lxu_X 1340 N 1340 (1354)
T ss_dssp H
T ss_pred H
Confidence 3
No 415
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=24.44 E-value=4.4e+02 Score=24.67 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcC---CCCcH-HhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 11 FEEAKQLAGDFEAKY---DKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g---~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
..++.++++.+...+ +.++. ..|..|+..+ +.-+.++-.+++.+.... ++.. ..++++....|......-
T Consensus 287 ~~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~l-R~~~~e~L~~l~~~~~~~---~~~r--~~~lDal~~aGT~~a~~~ 360 (1056)
T 1lsh_A 287 ESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFL-RNVDAGVLQSIWHKLHQQ---KDYR--RWILDAVPAMATSEALLF 360 (1056)
T ss_dssp HHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHH-TTSCHHHHHHHHHHHTTS---HHHH--HHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCcchHHHHHHHHHHH-hcCCHHHHHHHHHHHhcc---HHHH--HHHHHHhHhcCCHHHHHH
Confidence 456667777776643 22333 4577777664 556778888888887642 3333 348899999998866555
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHHhcc-cccc-------HHhHHHHHHHHHhccc------hH
Q 023915 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSMC-------KALHEKILHILISGKL------LK 152 (275)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~~~------~~ 152 (275)
+.+.+....+.+.. .-..+..+..-.---.+.++.+..+.... ...+ ..++..++..+|.... +.
T Consensus 361 i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~ 439 (1056)
T 1lsh_A 361 LKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ 439 (1056)
T ss_dssp HHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH
T ss_pred HHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 55555443333322 22223223222223344555555554432 1111 2356677777775421 23
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHhcCChh
Q 023915 153 DAYVVVKDNSESISHPAIKKFASAFVRLGNIN 184 (275)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 184 (275)
...+.+.+.....+...-...|.++...|...
T Consensus 440 ~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~ 471 (1056)
T 1lsh_A 440 PLHDLLSQSSDRAKEEEIVLALKALGNAGQPN 471 (1056)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCChh
Confidence 33333433334444444556677777777654
No 416
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=24.37 E-value=1.8e+02 Score=21.92 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHcc---CC---HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHH---H
Q 023915 14 AKQLAGDFEAKYDKYDVVLLNSMLCAYCRT---GD---MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYIL---A 84 (275)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~---a 84 (275)
|.+++..+. .|.+++..+|..++.++..- ++ +.+|.+.+..+.- ..|....-+.+.+-. .+.+.+. |
T Consensus 95 A~r~L~~LL-e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv--~~~~~~V~~~l~sLl-~Skd~~vK~ag 170 (265)
T 3b2a_A 95 ALRALGYLV-KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP--LEDSKLVRTYINELV-VSPDLYTKVAG 170 (265)
T ss_dssp HHHHHHHHH-TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB--SCCCHHHHHHHHHHH-TCSSHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc--ccchHHHHHHHHHHH-hCCChhHHHHH
Confidence 444444444 46788999999888887653 33 4556666666622 223333333333333 5555543 5
Q ss_pred HHHHHHHHH
Q 023915 85 YRTMVDMHR 93 (275)
Q Consensus 85 ~~~~~~m~~ 93 (275)
+.++.+|-.
T Consensus 171 l~~L~eia~ 179 (265)
T 3b2a_A 171 FCLFLNMLN 179 (265)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHhhc
Confidence 666666654
No 417
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.31 E-value=1.8e+02 Score=20.12 Aligned_cols=58 Identities=5% Similarity=-0.039 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhccchHHHHHHHHHhhcCCChh-HHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 023915 137 LHEKILHILISGKLLKDAYVVVKDNSESISHP-AIKKFASAFVRLGN--INLVNDVMKAIH 194 (275)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~~~--~~~a~~~~~~m~ 194 (275)
....+|+-|...++.++|...++++......+ ....+|..-...++ -+.+-.++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34567888888888888888888876432223 22333333333332 234556666653
No 418
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.03 E-value=3.3e+02 Score=23.10 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCCh--hhHH-HHHHHHHccCCHHHHHHHHHHHHHc
Q 023915 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDY--NTFH-ILIKYFCKEKMYILAYRTMVDMHRK 94 (275)
Q Consensus 30 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~--~t~~-~li~~~~~~~~~~~a~~~~~~m~~~ 94 (275)
...+|.+++.|...+.++.|..+.....-- .-.++. .+|. .+-..+.-.+++.+|.+.+.+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356888888999999999999888876410 000111 2232 2334455667888888887776643
No 419
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=23.87 E-value=1.1e+02 Score=19.52 Aligned_cols=81 Identities=9% Similarity=-0.017 Sum_probs=34.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHH
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT--FHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEE---LCSSLIF 108 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~ 108 (275)
.+.+...++.|+.+.+..++ +.|..++... -.+.+...+..|+.+- .+.+.+.|..++.. -.+. +.
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~d~~g~t~-L~ 85 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILM----ANGADVNAKDEYGLTPLYLATAHGHLEI----VEVLLKNGADVNAVDAIGFTP-LH 85 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCH-HH
T ss_pred cHHHHHHHHhCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCCCcCCCCCCCH-HH
Confidence 34444445666765444443 3344333221 1123333445555543 33444455544322 2223 33
Q ss_pred HHhccCCHHHHHHHH
Q 023915 109 HLGKMRAHSEALSVY 123 (275)
Q Consensus 109 ~~~~~g~~~~a~~~~ 123 (275)
..+..|+.+-+.-++
T Consensus 86 ~A~~~~~~~~v~~Ll 100 (136)
T 2jab_A 86 LAAFIGHLEIAEVLL 100 (136)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334456655443333
No 420
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=23.63 E-value=1.3e+02 Score=23.56 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcC-----CCCc---HHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHH
Q 023915 11 FEEAKQLAGDFEAKY-----DKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYI 82 (275)
Q Consensus 11 ~~~a~~~~~~m~~~g-----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 82 (275)
-++|.-+|..+...- ..++ ...+-..+..+.+.-++ +++..+.+.|+.|...++.=++..+++.=.++
T Consensus 170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 456777776665421 1222 22333344444444343 57777888899999999999999999988999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHh---ccCCHHHHHHHHHHH
Q 023915 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLG---KMRAHSEALSVYNML 126 (275)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m 126 (275)
.+.++|+-+...|...-....-+++..+. -..+.++...+++.+
T Consensus 246 ~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 246 LACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 99999999998773221112223333221 134677766666543
No 421
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.58 E-value=1.4e+02 Score=18.46 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-----ccCCHHHHHHHHHHHH
Q 023915 43 TGDMESVMHVMRKLDELAISPDYNTFHILIKYFC-----KEKMYILAYRTMVDMH 92 (275)
Q Consensus 43 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-----~~~~~~~a~~~~~~m~ 92 (275)
.|++-+|.+++++.=...-.|....|..||.... +.|+. |..++.+-.
T Consensus 14 ~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 14 AGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 3777777777777655442244455555555422 33554 555555544
No 422
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.63 E-value=3.4e+02 Score=22.74 Aligned_cols=146 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 023915 42 RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (275)
Q Consensus 42 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (275)
...+.+-|.++ ..+.|++--...|.--.+.+...|++++|-.+--.-. .|+-.+..|.+.+-..-..-|+..-.+.
T Consensus 341 ~l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 341 VLQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TTCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred ccCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHH
Q ss_pred HHHHHHhccccccHHhHHHHHHHHHhccchHHHHHHHHHhhcCCChh--------HHHHHHHHHHhcCChhHHHHHHHH
Q 023915 122 VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYVVVKDNSESISHP--------AIKKFASAFVRLGNINLVNDVMKA 192 (275)
Q Consensus 122 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~ 192 (275)
+|..+...+ ..+..----+++.-...|+.+-..+++.+-+-..+.. ..+..+..|.+++-..++...|-+
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlvk~~d~~LAl~IY~~a~~~~Kvi~cl~e 494 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAE 494 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHHHHHCSHHHHHHHHHHCCCCC-------
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhhhhcCHHHHHHHHHHcCCcHHHHHHhhC
No 423
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.54 E-value=1.9e+02 Score=22.19 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=69.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHhcCCCCcH---HhHHHHHHHHHc--cCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHHH
Q 023915 3 SAFCRGGCFEEAKQLAGDFEAKYDKYDV---VLLNSMLCAYCR--TGDMESVMHVMRKLDELAISPDYNTF--HILIKYF 75 (275)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~ 75 (275)
...++.|+.+-+..++++ .|..++. ...+.+..++.. .+..+.. .+.+.+.|..|+.... .+.+...
T Consensus 173 ~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i---~~lLl~~gad~n~~d~~g~t~L~~a 246 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAI---THLLLDHGADVNVRGERGKTPLILA 246 (337)
T ss_dssp HHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHH---HHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred HHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHcCcccHHHH---HHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 345677887766555433 3544432 233344443332 3334443 4445667766654322 2345556
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHhccCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhccchH
Q 023915 76 CKEKMYILAYRTMVDMHRKGHQPEE---ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (275)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 152 (275)
+..|..+.+..++. ..|..++. .-.+.|..| ++.|+.+-+ +.+.+.|..++..+ .+...+..|+.+
T Consensus 247 ~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv----~~Ll~~GAd~n~~~---~L~~A~~~~~~~ 315 (337)
T 4g8k_A 247 VEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLA-VELKLKKIA----ELLCKRGASTDCGD---LVMTARRNYDHS 315 (337)
T ss_dssp HHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHHH-HHTTCHHHH----HHHHTTSCSSTTCC---HHHHHHHTTCHH
T ss_pred HHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHHH-HHcCCHHHH----HHHHHCCCCCCCCC---HHHHHHHcCCHH
Confidence 67788776554433 23444432 223344433 455666543 44455666555432 344445667766
Q ss_pred HHHHHHH
Q 023915 153 DAYVVVK 159 (275)
Q Consensus 153 ~a~~~~~ 159 (275)
-+.-+++
T Consensus 316 iv~~Ll~ 322 (337)
T 4g8k_A 316 LVKVLLS 322 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 424
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=22.32 E-value=1e+02 Score=18.96 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHH
Q 023915 168 PAIKKFASAFVRLGNINLVNDV 189 (275)
Q Consensus 168 ~~~~~li~~~~~~~~~~~a~~~ 189 (275)
.+...|+.++.+.|.-+-|..+
T Consensus 72 At~~~L~~AL~~~~~~~iae~i 93 (99)
T 1fad_A 72 ASVAGLVKALRTCRLNLVADLV 93 (99)
T ss_dssp GSHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHCCcHHHHHHH
Confidence 3444555555555544444444
No 425
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.26 E-value=2e+02 Score=19.90 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=8.0
Q ss_pred CCHHhHHHHHHHHhccCC
Q 023915 98 PEEELCSSLIFHLGKMRA 115 (275)
Q Consensus 98 ~~~~~~~~li~~~~~~g~ 115 (275)
++...-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 444444444444444444
No 426
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.96 E-value=1.8e+02 Score=20.67 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=13.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhh
Q 023915 35 SMLCAYCRTGDMESVMHVMRKLDE 58 (275)
Q Consensus 35 ~li~~~~~~g~~~~a~~~~~~m~~ 58 (275)
.+|.++.+.|++++|.++..++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555443
No 427
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.81 E-value=1.4e+02 Score=18.05 Aligned_cols=63 Identities=5% Similarity=-0.018 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHH
Q 023915 14 AKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILA 84 (275)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 84 (275)
...+++.+.+.|+- +..-+..+-. .....++|.++++.+..+| ...|..++.++...+....|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 44677778877654 5555555554 2567888999999887755 45688888888877765544
No 428
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=21.44 E-value=3.9e+02 Score=23.09 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---HHhcCCC-CcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 023915 11 FEEAKQLAGD---FEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYR 86 (275)
Q Consensus 11 ~~~a~~~~~~---m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 86 (275)
.++..++.+. +.+..++ -|..+|-..+.-|...|......++++.-+. ....+.--||...-
T Consensus 5 ~~~~~~~~~~~q~l~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n--------------~~l~~~igWdLv~~ 70 (596)
T 4f52_E 5 VEELQSIIKRCQILEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKN--------------KVIIKNMGWNLVGP 70 (596)
T ss_dssp HHHHHHHHHHHSSCC---------CHHHHHHHHHHSSSCSHHHHHHHTTCTT--------------HHHHHHTGGGGHHH
T ss_pred HHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhCcch--------------hHHHHHcCcccHHH
Q ss_pred HHHHHHHcCCCCCH-HhHHHHHHHHhccCCHHH-HHHHHHHHHhccccccHHhHHHHHHHHH
Q 023915 87 TMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSE-ALSVYNMLRYSKRSMCKALHEKILHILI 146 (275)
Q Consensus 87 ~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~~~~~li~~~~ 146 (275)
+...+...+..++. ..+..++...++.|++.+ ..++.+.+......-....|..++..+.
T Consensus 71 lv~~l~~~~~~~~~~~~s~~iL~~la~lcnPrEvil~llE~le~~~~~~~~~~f~~LL~~Lq 132 (596)
T 4f52_E 71 VVRCLLCKDKEDSKRKVYFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQSILLLLQPLQ 132 (596)
T ss_dssp HHHHHHTSCCCSSSTHHHHHHHHHHHHHSCGGGHHHHHGGGGTSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHhcccCcchHHHHHHHHHHHH
No 429
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.37 E-value=1.3e+02 Score=17.47 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 023915 46 MESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (275)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 76 (275)
.++|.+.|.+|....-.+...+|...+..+.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 3455555555543222222334555554444
No 430
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.14 E-value=1.3e+02 Score=21.23 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhcc
Q 023915 63 PDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (275)
Q Consensus 63 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (275)
|....++-++..++...-++.++..+.+....| ..+..+|-.-+..+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 334456777777777777777777777777777 35555666555555553
No 431
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.11 E-value=1.7e+02 Score=18.74 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 023915 11 FEEAKQLAGDFE 22 (275)
Q Consensus 11 ~~~a~~~~~~m~ 22 (275)
+.+|+.-+++..
T Consensus 4 ~~~al~~L~e~~ 15 (119)
T 1wty_A 4 LARAVERLKAAL 15 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 432
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=21.09 E-value=2.1e+02 Score=19.72 Aligned_cols=9 Identities=11% Similarity=-0.241 Sum_probs=3.7
Q ss_pred hhHHHHHHH
Q 023915 203 GIFHIAIAR 211 (275)
Q Consensus 203 ~~y~~li~~ 211 (275)
.+|.-++..
T Consensus 146 i~~~eF~~~ 154 (191)
T 1y1x_A 146 LGFDDYVEL 154 (191)
T ss_dssp BCHHHHHHH
T ss_pred EeHHHHHHH
Confidence 344444433
No 433
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=21.05 E-value=2.7e+02 Score=20.92 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=7.6
Q ss_pred HhHHHHHHHHhcc
Q 023915 101 ELCSSLIFHLGKM 113 (275)
Q Consensus 101 ~~~~~li~~~~~~ 113 (275)
..|..-|+.|...
T Consensus 181 ~~Y~~WI~~y~~~ 193 (263)
T 2qcx_A 181 PIYQKWIGTYGGD 193 (263)
T ss_dssp HHHHHHHHHHSSH
T ss_pred cHHHHHHHHhCCH
Confidence 4566666666554
No 434
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=21.02 E-value=46 Score=27.79 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 67 (275)
.++++|++..++.++.+-..++ |-.-.|.++|.++.++|+.||..|
T Consensus 212 ~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 212 DSLDAALEMAKQAKEEKKALSI-------------GLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEE-------------EEESCHHHHHHHHHHTTCCCSEEC
T ss_pred CCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 4566666666666555433222 223335566777777777776543
No 435
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.97 E-value=5.4e+02 Score=25.02 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=49.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHhc
Q 023915 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYILAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (275)
Q Consensus 33 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (275)
-+.||.++++.|..--=+.+++ ... ....+...+.|.++.+.--.-|.......+.--.+
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~----~~~----------------~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~ 1296 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLD----DCI----------------KDSLAEINELYTEIIKFVDANDSKAIQFALWHAYA 1296 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TCS----------------GGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----hhh----------------hhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHH
Confidence 4788999888764322222222 111 12344455666666543211222222222233335
Q ss_pred cCCHHHHHHHHHHHHhccccccHHhHHHHHHHHHhcc
Q 023915 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (275)
Q Consensus 113 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 149 (275)
++++-.|++++..+.+.. ++...|..++..+...|
T Consensus 1297 ~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1297 HGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 677778888777776544 45566766666654443
No 436
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=20.88 E-value=3.1e+02 Score=21.53 Aligned_cols=194 Identities=7% Similarity=-0.037 Sum_probs=89.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHhHHHHHHHH
Q 023915 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYILAYRTMVDMHRKG--HQPEEELCSSLIFHL 110 (275)
Q Consensus 34 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~ 110 (275)
+.+|....+.+..++...+|+++...-+..-.. --|.++.-+...+..+.-..+++.+...= +..+... +.++...
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G-~rvvQk~ 116 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYG-CRVIQKA 116 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTH-HHHHHHH
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHh-HHHHHHH
Confidence 456666667777888888888876532111111 13567777777777776666666653110 0011111 2234444
Q ss_pred hccCCHHHHHHHHHHHHhccccccHH-hHHHHHHHHHhccchHHHHHHHHHhhcCCCh---hHH-HHHHHHHHhcCChhH
Q 023915 111 GKMRAHSEALSVYNMLRYSKRSMCKA-LHEKILHILISGKLLKDAYVVVKDNSESISH---PAI-KKFASAFVRLGNINL 185 (275)
Q Consensus 111 ~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~-~~li~~~~~~~~~~~ 185 (275)
......+.-..+++++...-...... .-|.+++.+...+..+.-..+++.+...... ..| ..++..+......+.
T Consensus 117 le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~ 196 (351)
T 3gvo_A 117 LESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 196 (351)
T ss_dssp HHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHH
Confidence 44444444455555443221111111 2244666666655555444455544321100 111 233444444445555
Q ss_pred HHHHHHHHHHcC--CCCChhhHHHHHHHHHHhchhHHHHHHHHHHHh
Q 023915 186 VNDVMKAIHATG--YRIDQGIFHIAIARYIAEREKKELLLKLLEWMT 230 (275)
Q Consensus 186 a~~~~~~m~~~g--~~p~~~~y~~li~~~~~~~~~~~~a~~l~~~m~ 230 (275)
-..+++++...- +.-| ..=|.++..++ ..+..+.-..+++.+.
T Consensus 197 ~~~ii~~l~~~~~~L~~d-~~Gn~ViQ~~l-~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 197 TLPILEELHQHTEQLVQD-QYGNYVIQHVL-EHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHHHHHTTHHHHHTS-TTHHHHHHHHH-HHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHhcCCC-chHHHHHHHHH-HhCchhhHHHHHHHHH
Confidence 555666554310 0001 11244555554 3344444455555543
No 437
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.81 E-value=1.5e+02 Score=17.83 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 023915 47 ESVMHVMRKLD 57 (275)
Q Consensus 47 ~~a~~~~~~m~ 57 (275)
++|...|.+|.
T Consensus 17 eea~~~Fk~LL 27 (82)
T 2dod_A 17 EARMKQFKDML 27 (82)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 438
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=20.61 E-value=46 Score=27.88 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 67 (275)
.++++|++..++.++.+-..++ |-.-.|.++|.++.++|+.||..|
T Consensus 217 ~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 217 TDLDDALVRIAKYTAEGKAISI-------------ALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEE-------------EEESCHHHHHHHHHHHTCCCSEEC
T ss_pred CCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 4566666666666655443222 223335566777777777776543
No 439
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=20.52 E-value=47 Score=27.77 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCChhh
Q 023915 9 GCFEEAKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67 (275)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 67 (275)
.++++|++..++.++.+-..++ |-.-.|.++|.++.++|+.||..|
T Consensus 213 ~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 213 ASIEEALAWAEEAKLAGKPLSI-------------ALLGNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEE-------------EEESCHHHHHHHHHTTTCCCSEEC
T ss_pred CCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 4566666666666655443222 223345567777777777777543
Done!