Query 023917
Match_columns 275
No_of_seqs 162 out of 562
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 4.3E-37 1.5E-41 265.5 6.7 113 163-275 3-119 (181)
2 2y0n_A MALE-specific lethal 3 100.0 2.4E-36 8.1E-41 266.7 8.2 113 163-275 5-155 (211)
3 3oa6_A MALE-specific lethal 3 100.0 2.3E-29 7.7E-34 199.4 8.3 76 47-122 15-100 (110)
4 2f5k_A MORF-related gene 15 is 100.0 3.7E-29 1.3E-33 196.4 9.2 77 47-123 18-94 (102)
5 3m9q_A Protein MALE-specific l 99.9 4.2E-28 1.4E-32 189.9 9.1 72 50-121 18-99 (101)
6 3m9p_A MALE-specific lethal 3 99.9 9.3E-28 3.2E-32 190.0 8.3 73 50-122 18-100 (110)
7 2lrq_A Protein MRG15, NUA4 com 99.9 6.3E-29 2.2E-33 189.6 0.0 73 49-121 10-82 (85)
8 3e9g_A Chromatin modification- 99.9 2.2E-26 7.6E-31 185.7 8.4 75 51-125 7-119 (130)
9 2k3y_A Chromatin modification- 99.9 4.1E-26 1.4E-30 187.3 7.9 72 51-122 9-118 (136)
10 2lcc_A AT-rich interactive dom 99.9 4.6E-23 1.6E-27 154.1 7.1 63 51-113 5-71 (76)
11 2ro0_A Histone acetyltransfera 99.9 1.9E-21 6.4E-26 150.2 10.0 54 51-104 23-76 (92)
12 2rnz_A Histone acetyltransfera 99.8 4.5E-21 1.5E-25 148.2 6.6 54 51-104 25-78 (94)
13 2eko_A Histone acetyltransfera 99.8 8.2E-21 2.8E-25 145.1 6.1 54 51-104 9-67 (87)
14 2bud_A Males-absent on the fir 99.8 2E-20 6.8E-25 143.6 5.9 56 54-109 17-76 (92)
15 1wgs_A MYST histone acetyltran 99.8 1E-19 3.5E-24 149.6 8.9 56 51-106 12-70 (133)
16 2eqm_A PHD finger protein 20-l 99.4 2.3E-13 8E-18 104.1 7.8 61 45-107 13-76 (88)
17 3sd4_A PHD finger protein 20; 99.3 1.3E-11 4.5E-16 90.1 7.9 56 44-101 5-61 (69)
18 3h8z_A FragIle X mental retard 98.6 5.8E-08 2E-12 78.9 7.2 57 47-107 56-118 (128)
19 4a4f_A SurviVal of motor neuro 98.2 2.5E-06 8.6E-11 60.9 6.8 58 46-107 3-62 (64)
20 1mhn_A SurviVal motor neuron p 98.0 1.5E-05 5.1E-10 55.9 6.1 53 51-107 3-57 (59)
21 3s6w_A Tudor domain-containing 97.8 4.7E-05 1.6E-09 52.2 6.6 50 52-105 2-53 (54)
22 1wjq_A KIAA1798 protein; MBT d 97.8 5.2E-05 1.8E-09 59.6 6.8 52 51-106 13-69 (107)
23 2equ_A PHD finger protein 20-l 97.8 4.8E-05 1.6E-09 56.0 6.1 53 50-108 8-61 (74)
24 1g5v_A SurviVal motor neuron p 97.7 8.9E-05 3E-09 56.3 7.5 53 51-107 10-64 (88)
25 3p8d_A Medulloblastoma antigen 97.5 0.00019 6.5E-09 51.8 6.1 51 51-107 6-57 (67)
26 2l8d_A Lamin-B receptor; DNA b 97.4 0.00048 1.6E-08 49.0 6.9 52 49-105 7-60 (66)
27 2dig_A Lamin-B receptor; tudor 97.4 0.00055 1.9E-08 48.9 6.8 52 49-105 10-63 (68)
28 3pnw_C Tudor domain-containing 97.3 0.00061 2.1E-08 50.3 6.8 54 51-108 17-72 (77)
29 2d9t_A Tudor domain-containing 97.3 0.00056 1.9E-08 50.5 6.5 53 51-107 9-63 (78)
30 2biv_A SCML2 protein, sex COMB 97.3 0.00057 2E-08 61.0 7.5 53 49-105 169-226 (243)
31 3qii_A PHD finger protein 20; 97.3 0.00059 2E-08 51.3 6.2 51 51-107 21-72 (85)
32 2m0o_A PHD finger protein 1; t 97.2 0.00049 1.7E-08 50.5 5.2 50 49-103 24-74 (79)
33 2xk0_A Polycomb protein PCL; t 97.2 0.0006 2.1E-08 49.0 5.2 51 49-106 13-64 (69)
34 4hcz_A PHD finger protein 1; p 97.1 0.00095 3.2E-08 46.4 5.2 50 51-105 3-53 (58)
35 2eqj_A Metal-response element- 97.0 0.0012 4.1E-08 47.3 5.3 50 50-104 12-62 (66)
36 2r58_A Polycomb protein SCM; M 96.9 0.0017 5.9E-08 58.6 7.5 54 49-106 141-199 (265)
37 2ldm_A Uncharacterized protein 96.0 0.00013 4.4E-09 54.6 0.0 50 51-106 6-56 (81)
38 3fdr_A Tudor and KH domain-con 96.8 0.0035 1.2E-07 47.3 7.3 53 51-108 27-81 (94)
39 2e5p_A Protein PHF1, PHD finge 96.6 0.003 1E-07 45.1 5.1 52 49-105 7-59 (68)
40 2e5q_A PHD finger protein 19; 96.6 0.0017 5.7E-08 45.8 3.4 51 50-105 6-57 (63)
41 2biv_A SCML2 protein, sex COMB 96.2 0.015 5.2E-07 51.7 8.3 53 50-106 61-118 (243)
42 3fdt_A Chromobox protein homol 96.0 0.013 4.4E-07 40.8 5.7 34 70-103 8-41 (59)
43 3i91_A Chromobox protein homol 96.0 0.012 4.2E-07 40.1 5.2 35 70-104 8-42 (54)
44 2diq_A Tudor and KH domain-con 95.9 0.0082 2.8E-07 46.6 4.7 54 51-109 32-87 (110)
45 1pfb_A Polycomb protein; chrom 95.9 0.013 4.4E-07 40.1 5.1 36 69-104 7-42 (55)
46 3h91_A Chromobox protein homol 95.9 0.014 4.8E-07 39.8 5.2 35 70-104 8-42 (54)
47 2r58_A Polycomb protein SCM; M 95.9 0.023 7.8E-07 51.2 8.1 51 51-105 34-89 (265)
48 1oz2_A Lethal(3)malignant brai 95.9 0.016 5.5E-07 53.8 7.2 51 51-105 252-307 (331)
49 3h6z_A Polycomb protein SFMBT; 95.8 0.016 5.6E-07 55.8 7.2 53 49-105 374-431 (447)
50 3lwe_A M-phase phosphoprotein 95.8 0.011 3.6E-07 41.6 4.3 35 70-104 9-43 (62)
51 1oz2_A Lethal(3)malignant brai 95.8 0.02 6.8E-07 53.1 7.3 51 51-105 148-203 (331)
52 1pdq_A Polycomb protein; methy 95.7 0.024 8.4E-07 41.2 6.0 41 64-104 18-59 (72)
53 3f2u_A Chromobox protein homol 95.6 0.019 6.5E-07 39.3 5.1 35 69-103 6-40 (55)
54 3mts_A Histone-lysine N-methyl 95.5 0.018 6.2E-07 40.8 4.8 35 70-104 5-39 (64)
55 2k1b_A Chromobox protein homol 95.5 0.02 6.7E-07 41.8 4.9 40 65-104 20-60 (73)
56 2d9u_A Chromobox protein homol 95.4 0.027 9.2E-07 40.9 5.5 37 69-105 14-50 (74)
57 2kvm_A Chromobox protein homol 95.4 0.023 7.9E-07 41.3 5.1 37 69-105 17-53 (74)
58 1ri0_A Hepatoma-derived growth 95.4 0.016 5.4E-07 45.4 4.5 58 49-108 17-78 (110)
59 3g7l_A Chromo domain-containin 95.4 0.027 9.3E-07 39.4 5.3 39 66-104 7-47 (61)
60 1wjr_A KIAA1617 protein; MBT d 95.3 0.016 5.4E-07 46.7 4.4 52 51-106 11-69 (127)
61 3ut1_A Lethal(3)malignant brai 95.3 0.036 1.2E-06 51.2 7.3 51 51-105 247-302 (324)
62 3f70_A Lethal(3)malignant brai 95.3 0.038 1.3E-06 53.4 7.6 52 51-106 366-422 (456)
63 2dnv_A Chromobox protein homol 95.2 0.016 5.6E-07 40.9 3.7 36 70-105 15-50 (64)
64 1q3l_A Heterochromatin protein 95.2 0.028 9.4E-07 40.5 5.0 39 65-103 15-54 (69)
65 2hqx_A P100 CO-activator tudor 95.1 0.073 2.5E-06 46.5 8.5 53 51-108 65-118 (246)
66 2l89_A PWWP domain-containing 95.0 0.093 3.2E-06 40.7 7.9 60 50-111 4-72 (108)
67 1ap0_A Modifier protein 1; chr 95.0 0.035 1.2E-06 40.2 5.1 35 69-103 17-51 (73)
68 4hae_A CDY-like 2, chromodomai 94.7 0.052 1.8E-06 40.2 5.4 41 64-104 21-63 (81)
69 1h3z_A Hypothetical 62.8 kDa p 94.5 0.079 2.7E-06 41.0 6.2 59 51-111 6-75 (109)
70 3feo_A MBT domain-containing p 94.1 0.1 3.5E-06 50.1 7.4 51 51-105 362-417 (437)
71 2wac_A CG7008-PA; unknown func 94.0 0.16 5.6E-06 43.0 7.8 52 51-108 51-104 (218)
72 3ntk_A Maternal protein tudor; 94.0 0.081 2.8E-06 43.9 5.7 51 51-108 47-99 (169)
73 2rsn_A Chromo domain-containin 93.7 0.089 3E-06 38.3 4.8 39 66-104 21-61 (75)
74 3pfs_A Bromodomain and PHD fin 93.6 0.11 3.7E-06 43.3 5.7 63 47-110 32-123 (158)
75 4fu6_A PC4 and SFRS1-interacti 93.5 0.028 9.6E-07 46.3 2.1 56 51-108 22-81 (153)
76 3ut1_A Lethal(3)malignant brai 93.5 0.21 7.1E-06 46.1 8.0 51 51-105 143-198 (324)
77 2gfu_A DNA mismatch repair pro 93.4 0.14 4.7E-06 41.2 5.9 61 49-110 20-88 (134)
78 4b9w_A TDRD1, tudor domain-con 93.2 0.21 7.1E-06 42.4 7.1 53 51-108 65-119 (201)
79 4b9x_A TDRD1, tudor domain-con 93.1 0.24 8.3E-06 42.8 7.4 53 51-108 65-119 (226)
80 3bdl_A Staphylococcal nuclease 92.6 0.28 9.5E-06 48.3 8.0 53 51-108 411-464 (570)
81 2dnt_A Chromodomain protein, Y 92.6 0.089 3E-06 38.5 3.3 35 70-104 18-53 (78)
82 3qby_A Hepatoma-derived growth 92.4 0.063 2.2E-06 40.7 2.4 55 51-107 5-63 (94)
83 2rso_A Chromatin-associated pr 92.1 0.21 7.1E-06 37.8 4.9 35 70-104 35-72 (92)
84 2daq_A WHSC1L1 protein, isofor 91.9 0.12 4E-06 40.0 3.5 59 48-108 5-72 (110)
85 1g6z_A CLR4 protein; transfera 91.9 0.049 1.7E-06 39.1 1.2 35 70-104 13-49 (70)
86 3llr_A DNA (cytosine-5)-methyl 91.8 0.13 4.6E-06 42.6 3.9 58 49-108 14-76 (154)
87 1khc_A DNA cytosine-5 methyltr 91.1 0.28 9.5E-06 40.2 5.1 58 49-108 9-71 (147)
88 2qqr_A JMJC domain-containing 91.0 0.9 3.1E-05 35.9 7.7 53 51-108 5-58 (118)
89 3mea_A SAGA-associated factor 90.0 0.36 1.2E-05 41.0 4.9 41 49-90 114-156 (180)
90 3db3_A E3 ubiquitin-protein li 89.2 0.83 2.9E-05 37.9 6.4 41 51-91 10-68 (161)
91 2eqk_A Tudor domain-containing 88.8 1.8 6.3E-05 32.2 7.4 55 49-108 19-75 (85)
92 3ask_A E3 ubiquitin-protein li 88.5 0.89 3E-05 39.9 6.5 41 51-91 2-51 (226)
93 3mp6_A MBP, SGF29, maltose-bin 87.5 0.71 2.4E-05 44.3 5.8 42 46-90 452-495 (522)
94 2xdp_A Lysine-specific demethy 87.2 0.62 2.1E-05 37.1 4.3 52 51-107 6-58 (123)
95 3f70_A Lethal(3)malignant brai 86.7 1.1 3.6E-05 43.3 6.4 51 51-105 153-208 (456)
96 3l42_A Peregrin; transcription 86.5 0.4 1.4E-05 38.6 2.8 59 51-110 5-92 (130)
97 3dlm_A Histone-lysine N-methyl 85.5 2 6.8E-05 37.3 6.9 51 45-101 152-202 (213)
98 3dlm_A Histone-lysine N-methyl 85.1 1.7 5.9E-05 37.7 6.3 52 51-105 8-60 (213)
99 3h8z_A FragIle X mental retard 82.5 1.5 5.3E-05 35.0 4.6 47 54-106 4-52 (128)
100 1x3p_A Cpsrp43; chromo-2 domai 78.9 0.16 5.5E-06 34.6 -2.0 33 70-104 5-39 (54)
101 3db3_A E3 ubiquitin-protein li 78.3 4.7 0.00016 33.4 6.3 40 51-90 92-139 (161)
102 1ssf_A Transformation related 78.2 1.7 5.7E-05 35.9 3.5 37 53-92 10-49 (156)
103 2fhd_A RAD9 homolog, DNA repai 72.4 5.9 0.0002 32.4 5.3 38 55-92 9-51 (153)
104 2b2y_A CHD-1, chromodomain-hel 71.1 1 3.4E-05 38.3 0.5 33 73-105 50-82 (187)
105 2b2y_C CHD-1, chromodomain-hel 70.2 0.71 2.4E-05 36.4 -0.6 33 72-104 49-81 (115)
106 3mwy_W Chromo domain-containin 64.0 2.7 9.2E-05 42.7 2.1 27 78-104 69-95 (800)
107 3ask_A E3 ubiquitin-protein li 63.3 14 0.00049 32.1 6.3 28 51-78 75-109 (226)
108 2epb_A Chromodomain-helicase-D 60.8 14 0.00047 25.9 4.7 24 80-103 32-55 (68)
109 2a7y_A Hypothetical protein RV 57.6 7.5 0.00026 28.7 2.9 48 51-100 5-55 (83)
110 2h1e_A Chromo domain protein 1 54.7 3.9 0.00013 34.2 1.1 26 80-105 46-71 (177)
111 3feo_A MBT domain-containing p 50.5 54 0.0018 31.1 8.5 45 51-98 254-303 (437)
112 1nz9_A Transcription antitermi 48.5 22 0.00075 23.7 4.0 30 51-80 4-34 (58)
113 2g3r_A Tumor suppressor P53-bi 45.1 41 0.0014 26.5 5.5 33 54-89 7-41 (123)
114 3h6z_A Polycomb protein SFMBT; 44.5 40 0.0014 32.2 6.5 49 51-105 156-209 (447)
115 2fmm_A Chromobox protein homol 41.6 46 0.0016 23.6 5.0 33 69-103 19-51 (74)
116 2xdp_A Lysine-specific demethy 37.6 59 0.002 25.6 5.4 34 53-89 66-100 (123)
117 4hg1_A Putative cytoplasmic pr 36.2 13 0.00043 31.5 1.3 27 165-191 46-72 (225)
118 2qqr_A JMJC domain-containing 34.5 82 0.0028 24.5 5.8 34 53-89 65-99 (118)
119 2yuq_A Tyrosine-protein kinase 33.5 1.2E+02 0.0042 21.1 6.5 22 49-70 35-58 (85)
120 3nrw_A Phage integrase/site-sp 31.0 95 0.0033 22.5 5.6 18 195-212 4-21 (117)
121 2h1e_A Chromo domain protein 1 30.8 45 0.0015 27.6 4.0 35 70-104 125-164 (177)
122 2b2y_A CHD-1, chromodomain-hel 28.5 42 0.0014 28.0 3.4 34 70-103 135-171 (187)
123 1p94_A Plasmid partition prote 27.3 1E+02 0.0034 22.0 4.8 39 162-211 33-71 (76)
124 3nnf_A CURA; non-HAEM Fe(II)/a 27.2 28 0.00096 32.0 2.2 46 51-97 237-282 (344)
125 1use_A VAsp, vasodilator-stimu 26.9 97 0.0033 20.1 4.1 28 202-236 15-42 (45)
126 2jvv_A Transcription antitermi 26.5 86 0.0029 25.5 5.0 39 49-87 125-164 (181)
127 1y71_A Kinase-associated prote 26.3 1.1E+02 0.0037 24.3 5.1 26 51-76 7-32 (130)
128 2cp5_A Restin; microtubule bin 25.8 2.5E+02 0.0085 22.5 7.4 11 51-61 64-74 (141)
129 2in0_A Endonuclease PI-MTUI; h 24.6 2.3E+02 0.0079 21.5 7.0 35 53-87 26-61 (139)
130 3kup_A Chromobox protein homol 24.1 91 0.0031 21.4 3.9 32 69-102 16-47 (65)
131 1wx6_A Cytoplasmic protein NCK 23.9 1.9E+02 0.0065 20.2 6.3 22 49-70 33-58 (91)
132 1w4s_A Polybromo, polybromo 1 23.8 1.4E+02 0.0046 24.2 5.7 38 49-86 24-65 (174)
133 2d8h_A SH3YL1 protein; SH3 dom 23.5 1.5E+02 0.005 20.3 5.1 23 49-71 33-59 (80)
134 2ee1_A Chromodomain helicase-D 23.1 59 0.002 22.5 2.8 32 71-102 17-49 (64)
135 1x2q_A Signal transducing adap 22.3 2E+02 0.007 20.0 6.6 23 49-71 33-57 (88)
136 1at0_A 17-hedgehog; developmen 21.9 1.3E+02 0.0044 23.6 5.0 29 51-79 91-121 (145)
137 2dl5_A KIAA0769 protein; SH3 d 21.4 1.6E+02 0.0055 20.1 5.0 23 49-71 29-54 (78)
138 3mlq_E Transcription-repair co 21.1 1.1E+02 0.0039 21.3 4.0 50 51-104 2-53 (71)
139 3i3c_A Chromobox protein homol 20.7 1.1E+02 0.0037 21.8 3.9 32 69-102 26-57 (75)
140 2csq_A RIM-BP2, RIM binding pr 20.0 2.3E+02 0.0077 20.3 5.7 23 49-71 41-66 (97)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=4.3e-37 Score=265.52 Aligned_cols=113 Identities=44% Similarity=0.689 Sum_probs=99.1
Q ss_pred CceeEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhhhhcCCc--chhhHHHHHHHHHHHHhhhcCcc
Q 023917 163 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGL--VADSTGEIVKGLRCYFDKALPIM 240 (275)
Q Consensus 163 ~~~i~i~iP~~Lk~~LvdD~~~I~~~~~L~~LPa~~tV~~Il~~Y~~~~~~~~~~--~~~~~~E~~~Gl~~yFn~~L~~~ 240 (275)
+++++|.||+.||++|||||++|+++++|++|||++||++||++|+++....... ....++|+++||+.|||++||.+
T Consensus 3 ~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~~ 82 (181)
T 2f5j_A 3 RVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQ 82 (181)
T ss_dssp ---CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3568899999999999999999999999999999999999999999998764421 23478999999999999999999
Q ss_pred ccChhhHhhHHHhhh--CCCCCccccChhhhhhccCC
Q 023917 241 LLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVA 275 (275)
Q Consensus 241 LLY~~ER~Qy~~~~~--~~~~~S~~YG~~HLLRL~vk 275 (275)
|||++||+||.++++ ++.+||++||++|||||||+
T Consensus 83 LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvk 119 (181)
T 2f5j_A 83 LLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVR 119 (181)
T ss_dssp SCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHH
Confidence 999999999999996 46799999999999999985
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=266.73 Aligned_cols=113 Identities=45% Similarity=0.694 Sum_probs=98.9
Q ss_pred CceeEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhhhhcC--------------------------C
Q 023917 163 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD--------------------------G 216 (275)
Q Consensus 163 ~~~i~i~iP~~Lk~~LvdD~~~I~~~~~L~~LPa~~tV~~Il~~Y~~~~~~~~--------------------------~ 216 (275)
+.+++|.||+.||++|||||++|+++++|++|||++||++||++|+++..... .
T Consensus 5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 2y0n_A 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE 84 (211)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence 35688999999999999999999999999999999999999999999865311 0
Q ss_pred cchhhHHHHHHHHHHHHhhhcCccccChhhHhhHHHhhh------------CCCCCccccChhhhhhccCC
Q 023917 217 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMA------------ADVSPSSVYGAEHLLRLFVA 275 (275)
Q Consensus 217 ~~~~~~~E~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~------------~~~~~S~~YG~~HLLRL~vk 275 (275)
...+.++|+++||+.|||++||.+|||++||+||.+++. .+.+||++||++||||||||
T Consensus 85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvk 155 (211)
T 2y0n_A 85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVK 155 (211)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHH
Confidence 113468999999999999999999999999999999984 24689999999999999985
No 3
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=99.96 E-value=2.3e-29 Score=199.45 Aligned_cols=76 Identities=30% Similarity=0.608 Sum_probs=66.2
Q ss_pred CCCCCcCCCCEEEEEe-----CCeeeeeEEEEEEeeCC-----eeEEEEEEcCCCCCcceeeecccccccCHHhhhhchh
Q 023917 47 PASCPYQVNEKVLAFF-----QSHVYEAKVIQVQYRLK-----EWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPV 116 (275)
Q Consensus 47 ~~~~~f~vge~vl~~~-----~~~~y~AkIl~i~~~~~-----~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~qk~ 116 (275)
++-..|.+||+||||| ++++|+||||+|...++ .+.|||||.|||++|||||+++||+++|++|+++|++
T Consensus 15 ~~k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~neeN~~~qk~ 94 (110)
T 3oa6_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRK 94 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHHH
T ss_pred CCCcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCCHHHHHHHHH
Confidence 4455799999999999 56899999999986533 4789999999999999999999999999999999999
Q ss_pred hhhhhh
Q 023917 117 FTKKRD 122 (275)
Q Consensus 117 L~~~~~ 122 (275)
|.+++.
T Consensus 95 L~~~~~ 100 (110)
T 3oa6_A 95 LARKAV 100 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987764
No 4
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=99.96 E-value=3.7e-29 Score=196.44 Aligned_cols=77 Identities=36% Similarity=0.683 Sum_probs=71.6
Q ss_pred CCCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhhchhhhhhhhh
Q 023917 47 PASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKRDE 123 (275)
Q Consensus 47 ~~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~qk~L~~~~~~ 123 (275)
++...|.+||+|+|++++.||+|+|++|+..++...|||||.|||+||||||+++||+++|++|+++|++|.++++.
T Consensus 18 ~~~~~f~vGekVl~~~~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~L~~~~~~ 94 (102)
T 2f5k_A 18 DPKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQE 94 (102)
T ss_dssp CCSCSCCTTCEEEEESSSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCCHHHHHHHHHHHHHHHh
Confidence 34446999999999999999999999999998999999999999999999999999999999999999999887753
No 5
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=99.95 E-value=4.2e-28 Score=189.88 Aligned_cols=72 Identities=32% Similarity=0.547 Sum_probs=66.5
Q ss_pred CCcCCCCEEEEEe-----CCeeeeeEEEEEEee-----CCeeEEEEEEcCCCCCcceeeecccccccCHHhhhhchhhhh
Q 023917 50 CPYQVNEKVLAFF-----QSHVYEAKVIQVQYR-----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTK 119 (275)
Q Consensus 50 ~~f~vge~vl~~~-----~~~~y~AkIl~i~~~-----~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~qk~L~~ 119 (275)
..|++||+|+||| ++++|+|||++|... .+...|+|||.|||+||||||+++||+++|++|+++|++|.+
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~eeN~~~q~~L~~ 97 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQRELAE 97 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCHHHHHHHHHHHH
Confidence 3699999999999 579999999999985 356899999999999999999999999999999999999987
Q ss_pred hh
Q 023917 120 KR 121 (275)
Q Consensus 120 ~~ 121 (275)
++
T Consensus 98 ~~ 99 (101)
T 3m9q_A 98 AA 99 (101)
T ss_dssp HH
T ss_pred Hc
Confidence 76
No 6
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=99.94 E-value=9.3e-28 Score=190.04 Aligned_cols=73 Identities=32% Similarity=0.646 Sum_probs=67.2
Q ss_pred CCcCCCCEEEEEeCC-----eeeeeEEEEEEeeCC-----eeEEEEEEcCCCCCcceeeecccccccCHHhhhhchhhhh
Q 023917 50 CPYQVNEKVLAFFQS-----HVYEAKVIQVQYRLK-----EWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTK 119 (275)
Q Consensus 50 ~~f~vge~vl~~~~~-----~~y~AkIl~i~~~~~-----~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~qk~L~~ 119 (275)
..|.+||+|+||+++ ++|+|||++|+..++ ...|||||.|||+||||||+++||+++|++|+++|++|.+
T Consensus 18 ~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~eeN~~~q~~L~~ 97 (110)
T 3m9p_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLAR 97 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCHHHHHHHHHHHH
Confidence 369999999999996 999999999998643 4899999999999999999999999999999999999988
Q ss_pred hhh
Q 023917 120 KRD 122 (275)
Q Consensus 120 ~~~ 122 (275)
++.
T Consensus 98 ~a~ 100 (110)
T 3m9p_A 98 KAV 100 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 7
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=99.90 E-value=6.3e-29 Score=189.62 Aligned_cols=73 Identities=32% Similarity=0.666 Sum_probs=68.8
Q ss_pred CCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhhchhhhhhh
Q 023917 49 SCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKR 121 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~qk~L~~~~ 121 (275)
...|.+||+|+|++++.+|+|+|++|+..++..+|||||.|||+||||||+++||+++|++|+++|++|.+++
T Consensus 10 ~~~~~~Gekv~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~l~~~~ 82 (85)
T 2lrq_A 10 NTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQC 82 (85)
Confidence 3369999999999999999999999999888899999999999999999999999999999999999987766
No 8
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=99.93 E-value=2.2e-26 Score=185.73 Aligned_cols=75 Identities=32% Similarity=0.624 Sum_probs=66.4
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeC--------------------------------------CeeEEEEEEcCCCC
Q 023917 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRL--------------------------------------KEWTFRVHYLGWNK 92 (275)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~--------------------------------------~~~~Y~VHY~GWn~ 92 (275)
.|++||+|+|||++.+|+|||++|.... ..+.|||||+|||+
T Consensus 7 ~f~~gE~VlcfHg~~~YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn~ 86 (130)
T 3e9g_A 7 EFALGGRCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFIHYQGWKS 86 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEEEEETTSCG
T ss_pred cccCCCEEEEEeCCcceeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEEEEeCCCCC
Confidence 5999999999999999999999995311 23589999999999
Q ss_pred CcceeeecccccccCHHhhhhchhhhhhhhhhh
Q 023917 93 SWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDK 125 (275)
Q Consensus 93 r~DEWV~~~ri~k~t~en~~~qk~L~~~~~~~k 125 (275)
+|||||+++||+++|++|+++|++|.++++..+
T Consensus 87 ~WDEWV~e~rvlk~~eeN~~lqk~L~~~a~~~~ 119 (130)
T 3e9g_A 87 SWDEWVGYDRIRAYNEENIAMKKRLANEAKEAK 119 (130)
T ss_dssp GGCEEEETTTEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCHhhhhccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988875443
No 9
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.1e-26 Score=187.26 Aligned_cols=72 Identities=32% Similarity=0.645 Sum_probs=64.7
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEe------eC-----------------------C---------eeEEEEEEcCCCC
Q 023917 51 PYQVNEKVLAFFQSHVYEAKVIQVQY------RL-----------------------K---------EWTFRVHYLGWNK 92 (275)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~------~~-----------------------~---------~~~Y~VHY~GWn~ 92 (275)
.|++|++|+|||++++|+||||++.. .+ + +.+|||||+|||+
T Consensus 9 ~f~~gekvl~~hg~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn~ 88 (136)
T 2k3y_A 9 EFALGGRVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGWKS 88 (136)
T ss_dssp SCCTTSEEEEECSSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEEECCTTSCG
T ss_pred ccCCCCEEEEEECCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEEEEeCCcCC
Confidence 59999999999999999999999985 11 1 2299999999999
Q ss_pred CcceeeecccccccCHHhhhhchhhhhhhh
Q 023917 93 SWDEWVGVHRLMKDTEANRHRQPVFTKKRD 122 (275)
Q Consensus 93 r~DEWV~~~ri~k~t~en~~~qk~L~~~~~ 122 (275)
||||||+++||+++|++|+++|++|..+++
T Consensus 89 rwDEWV~~dRil~~~eeN~~~qKeL~~kak 118 (136)
T 2k3y_A 89 SWDEWVGYDRIRAYNEENIAMKKRLANEAG 118 (136)
T ss_dssp GGCEEEETTTEEESCHHHHHHHHHHHHHSC
T ss_pred cceeeecHhhhhhCCHhHhHHHHHHHHHHH
Confidence 999999999999999999999999987773
No 10
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=154.09 Aligned_cols=63 Identities=29% Similarity=0.549 Sum_probs=59.3
Q ss_pred CcCCCCEEEEEeC----CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHHhhhh
Q 023917 51 PYQVNEKVLAFFQ----SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHR 113 (275)
Q Consensus 51 ~f~vge~vl~~~~----~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~ 113 (275)
.|.+|++|+|+++ +.+|+|+|++++..++...|||||.|||+||||||+.+||++++++|++.
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~~~~~ 71 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGLEH 71 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSSCSSCCC
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccccchhhh
Confidence 5999999999987 69999999999999999999999999999999999999999999988763
No 11
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.9e-21 Score=150.17 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=52.1
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
.|.+|++|+|++++.+|+|+||+++..++...|||||.|||+||||||+.+||.
T Consensus 23 ~~~vG~kv~v~~~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 23 DIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred cccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 599999999999999999999999998889999999999999999999999995
No 12
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-21 Score=148.24 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=52.0
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
.|.+|++|+|++++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 25 ~~~vG~kv~v~~~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 25 DIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GCCTTEEEEEECSSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred cccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 499999999999999999999999998899999999999999999999999995
No 13
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=145.11 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=51.2
Q ss_pred CcCCCCEEEEEe-----CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 51 PYQVNEKVLAFF-----QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 51 ~f~vge~vl~~~-----~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
.|.+|++|+|++ ++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcc
Confidence 599999999998 669999999999998888999999999999999999999995
No 14
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=99.81 E-value=2e-20 Score=143.55 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=50.6
Q ss_pred CCCEEEEEe-CCeeeeeEEEEEEeeC---CeeEEEEEEcCCCCCcceeeecccccccCHH
Q 023917 54 VNEKVLAFF-QSHVYEAKVIQVQYRL---KEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (275)
Q Consensus 54 vge~vl~~~-~~~~y~AkIl~i~~~~---~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (275)
.|++|+|+| ++.+|+|+|++++..+ +...|||||.|||+||||||+.+||++.+++
T Consensus 17 ~~e~vlc~~~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~~ 76 (92)
T 2bud_A 17 PDKIYFIRREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADD 76 (92)
T ss_dssp TTSCEEEECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHH
T ss_pred CCCEEEEEeCCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhccc
Confidence 367999999 6899999999999865 5689999999999999999999999998654
No 15
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=99.80 E-value=1e-19 Score=149.60 Aligned_cols=56 Identities=34% Similarity=0.471 Sum_probs=51.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEee--CCeeEEEEEEcCCCCCcceeeeccccccc
Q 023917 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYR--LKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (275)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~--~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (275)
.|.+|++|+|+++ +.||+|+||+++.. .+...|||||.|||+||||||+.+||.-.
T Consensus 12 ~~~vGe~v~~~~~d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~~ 70 (133)
T 1wgs_A 12 TVEIGETYLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALT 70 (133)
T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCT
T ss_pred ccCCCCEEEEEeCCCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcccc
Confidence 5999999999997 79999999999974 47899999999999999999999999643
No 16
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=99.44 E-value=2.3e-13 Score=104.10 Aligned_cols=61 Identities=20% Similarity=0.467 Sum_probs=50.8
Q ss_pred CCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccccC
Q 023917 45 PTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKDT 107 (275)
Q Consensus 45 ~~~~~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k~t 107 (275)
|..+...|++|.+|.|.+. +.+|+|+|+.++..+ ..|+|||.||+++|||||..+ +|++..
T Consensus 13 ~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~--~~v~VHfdGW~~~yDeWv~~dS~~I~P~g 76 (88)
T 2eqm_A 13 PNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEE--GKMLVHFERWSHRYDEWIYWDSNRLRPLE 76 (88)
T ss_dssp CSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTT--TEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred CCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccC--CEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence 3444557999999998873 578999999888643 489999999999999999987 888764
No 17
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=99.26 E-value=1.3e-11 Score=90.11 Aligned_cols=56 Identities=25% Similarity=0.556 Sum_probs=46.1
Q ss_pred CCCCCCCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc
Q 023917 44 PPTPASCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (275)
Q Consensus 44 ~~~~~~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (275)
||.++...|++|.++.|.+. +.+|.|+|++|+.. +..++|||.||+++||+|+..+
T Consensus 5 p~~~~~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~--~~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 5 PPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYE--EGKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp CCCCTTCCCSTTCEEEEECTTSCEEEEEEEEEETT--TTEEEEEETTSCGGGCEEEETT
T ss_pred CCCCCCCCcCCCCEEEEEECCCCccccEEEEEecc--CCEEEEEeCCCCCCCCEEEcCC
Confidence 45556667999999998874 45699999999653 3478999999999999999875
No 18
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=98.63 E-value=5.8e-08 Score=78.89 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=43.6
Q ss_pred CCCCCcCCCCEEEEEeCC------eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 47 PASCPYQVNEKVLAFFQS------HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 47 ~~~~~f~vge~vl~~~~~------~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.+...|.+|++|-|++.. -||.|+|++++. ..|+|+|.||...|+|||+.+||+.-+
T Consensus 56 ~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----~f~~V~y~~~~~~~~EiV~~~rlR~~n 118 (128)
T 3h8z_A 56 DYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----DFYVIEYAACDATYNEIVTLERLRPVN 118 (128)
T ss_dssp ----CCCTTCEEEEEECC---CCCEEEEEEEEEEET----TEEEEEETTC----CEEECGGGEEECC
T ss_pred ccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----CEEEEEEcCCCCCcceEEehhheEeCC
Confidence 334579999999999853 599999999983 489999999999999999999998754
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=98.24 E-value=2.5e-06 Score=60.93 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=47.3
Q ss_pred CCCCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 46 TPASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 46 ~~~~~~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.++...+++|+.|++.+ +|.||.|+|+++...+ ..|.|+|.+|.. -|.|+.++|...+
T Consensus 3 ~~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~--~~~~V~fvdYGn--~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 3 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEEN--GTAAITFAGYGN--AEVTPLLNLKPVE 62 (64)
T ss_dssp SCCSSCCCTTCEEEEECTTTSSEEEEEEEEEETTT--TEEEEEETTTTE--EEEEEGGGEECCS
T ss_pred CCcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCCC--CEEEEEEEecCC--EEEEeHHHcEeCC
Confidence 34566799999999987 5799999999998543 379999999976 4899999887643
No 20
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.97 E-value=1.5e-05 Score=55.88 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=44.2
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.|++|+.|++.+ +|.||.|+|+++... ...|.|+|.+|.. -|-|+.++|+..+
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~--~~~~~V~f~DYGn--~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK--RETCVVVYTGYGN--REEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT--TTEEEEEETTTTE--EEEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC--CCEEEEEEEcCCC--EEEEcHHHeeCCC
Confidence 489999999987 479999999999643 2479999999997 4889999888754
No 21
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.82 E-value=4.7e-05 Score=52.23 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=40.3
Q ss_pred cCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 52 YQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 52 f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
|++|+.|+|.+ +|.||.|+|+++.... ..|.|+|.+|..+ |-|+.++|..
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~--~~~~V~fvDYGn~--e~v~~~~lrp 53 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGNY--EEVLLSNIKP 53 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CC--SEEEEEETTTCCE--EEEEGGGEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEccCCe--EEEeHHHEEE
Confidence 78999999988 5799999999986532 4789999999874 8888887753
No 22
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=97.77 E-value=5.2e-05 Score=59.64 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=44.1
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k~ 106 (275)
.|++|-++.+.+. ..++.|.|.+|. +...+|||.||+.++|.|+..+ .|+..
T Consensus 13 ~F~~GMKLEAvD~~~p~~icvATV~~v~----g~rl~v~fDGw~~~~D~W~~~dSpdIhPV 69 (107)
T 1wjq_A 13 GFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGWNNCYDYWIDADSPDIHPV 69 (107)
T ss_dssp SCCSSCEEEEECTTCTTCEEEEEEEEEC----SSCEEEECSSSCGGGCEEECTTCSSCEET
T ss_pred cCCCCCEEEEEcCCCCCcEEeEEEEEec----CCEEEEEeCCCCCcCCEEEECCCCCcccC
Confidence 5999999999985 378999999994 3479999999999999999875 66653
No 23
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=4.8e-05 Score=55.98 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=44.4
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 50 ~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
..|.+|+.|++.| +|.||+|+|.+|... ..|.|.|.++| .|-|+.++|....+
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~---~~~~V~f~Dyn---~e~v~~~~lrplp~ 61 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE---GTFTVQFYDGV---IRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT---SSEEEEETTSC---EEEECGGGEECCCG
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC---CEEEEEEecCC---eEEecHHHCeeCCh
Confidence 3699999999998 569999999999643 37999999995 58999999877654
No 24
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.74 E-value=8.9e-05 Score=56.31 Aligned_cols=53 Identities=21% Similarity=0.410 Sum_probs=45.2
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.+.+|+.|++.| +|.||.|+|+++.... ..|.|.|.+|.. -|-|+.++|+...
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~--~~~~V~fiDYGN--~E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKR--ETCVVVYTGYGN--REEQNLSDLLSPI 64 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTT--TEEEEEETTTCC--EEEEEGGGCBCCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCC--CEEEEEEecCCC--EEEEcHHHcccCC
Confidence 589999999988 5799999999997532 379999999997 4889999998764
No 25
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.52 E-value=0.00019 Score=51.77 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=40.9
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.|.+||+|+|.|++ .+|+|+|.+|... ..|.|.|.+ + --+-|....|.+..
T Consensus 6 ~~~vGd~vmArW~D~~yYpA~I~si~~~---~~Y~V~F~d-G--~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 6 EFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAFS 57 (67)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT-S--CEEEEEGGGEEECC
T ss_pred ccccCCEEEEEcCCCCEeeEEEEEECCC---CeEEEEEeC-C--ceEEEeHHHcccCC
Confidence 59999999999964 8999999999765 369999988 3 35777777776543
No 26
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.41 E-value=0.00048 Score=49.00 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=41.5
Q ss_pred CCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 49 SCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
...|++||.|++.|.| .+|+|+|.++. .....|.|-|.. --+|=+.+.+|.+
T Consensus 7 ~~~~~vgd~VmaRW~Gd~~yYparI~Si~--s~~~~Y~V~fKd---gT~e~L~~kDIkp 60 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGSVLYYEVQVTSYD--DASHLYTVKYKD---GTELALKESDIRL 60 (66)
T ss_dssp SSSSCSSCEEEEECTTSSCEEEEEEEEEE--TTTTEEEEEETT---SCEEEEEGGGEEC
T ss_pred ceEeecCCEEEEEcCCCccceEEEEEEec--cCCceEEEEecC---CCEEeechhcccc
Confidence 3469999999999976 89999999998 445799999987 3466666666654
No 27
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.37 E-value=0.00055 Score=48.85 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=40.4
Q ss_pred CCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 49 SCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
...|++||.|++.|.| .+|+|+|.++. .....|.|-|.. --+|=+.+.+|.+
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSit--s~~~~Y~VkfKd---gT~e~L~~kDIKp 63 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHD--STSQLYTVKYKD---GTELELKENDIKS 63 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEE--TTTTEEEEECTT---SCEEEEETTTEEC
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEec--cCCceEEEEecC---CCEEEechhcccc
Confidence 3469999999999976 89999999998 345789999987 3356566655543
No 28
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=97.30 E-value=0.00061 Score=50.27 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=44.0
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
.+.+|+.|++.+ +|.||.|+|+++... ...|.|.|.+|.. -|-|+.++|+....
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~--~~~~~V~fvDYGN--~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSS--GMTAVVKFIDYGN--YEEVLLSNIKPIQT 72 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTT--SSEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCC--CCEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence 488999999987 679999999998643 2478999999987 68899998877644
No 29
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=97.29 E-value=0.00056 Score=50.54 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=44.3
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.+.+|+.|++.+ ++.||.|+|+++... ...|.|.|.+|.. -|-|+.++|+...
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~--~~~~~V~fiDYGN--~e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSS--GMTAVVKFTDYGN--YEEVLLSNIKPVQ 63 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSS--SSEEEEEETTTTE--EEEEEGGGEEECC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCC--CCEEEEEEEcCCC--eEEEcHHHeEeCC
Confidence 578999999988 579999999998642 3579999999986 5889998887764
No 30
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=97.27 E-value=0.00057 Score=60.97 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=44.5
Q ss_pred CCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 49 SCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 49 ~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
...|++|-++.+.+. ..++.|.|.+|.. ..++|||.||..++|.|+..+ +|+.
T Consensus 169 ~~~F~~GmKLEavD~~~p~~icvATV~~v~g----~rl~v~fDgw~~~~D~W~~~dSp~I~P 226 (243)
T 2biv_A 169 LNNFKVGMKLEAIDKKNPYLICPATIGDVKG----DEVHITFDGWSGAFDYWCKYDSRDIFP 226 (243)
T ss_dssp SCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred cccccCCCEEEEEccCCCCeEEEEEEEEecC----CEEEEEECCCCCcCCEEEeCCCCCeec
Confidence 346999999999975 4899999999973 368999999999999999875 5554
No 31
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.25 E-value=0.00059 Score=51.32 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=41.4
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.|.+||+|+|.|++ .+|+|+|..|... ..|.|-|.+ + --+-|....|.+.+
T Consensus 21 ~f~vGd~VlArW~D~~yYPAkI~sV~~~---~~YtV~F~D-G--~~etvk~~~IKp~~ 72 (85)
T 3qii_A 21 EFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAFS 72 (85)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT-S--CEEEEEGGGEEECC
T ss_pred ccccCCEEEEEeCCCCEeeEEEEEECCC---CeEEEEEeC-C--CeEEecHHHcccCC
Confidence 69999999999964 8999999999765 369999988 3 35777777776653
No 32
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=97.21 E-value=0.00049 Score=50.47 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=38.4
Q ss_pred CCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 49 SCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 49 ~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
...|.+||-|||.|. |.+|.++|++|.... ..|+|+|..=.+ -|+....|
T Consensus 24 ~~~f~eGeDVLarwsDGlfYLGTI~kV~~~~--e~ClV~F~D~S~---~W~~~kdi 74 (79)
T 2m0o_A 24 RPRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQ---FLVLWKDI 74 (79)
T ss_dssp CCCCCTTCEEEBCCTTSCCCEEEEEEEETTT--TEEEEEETTSCE---EEEETTTB
T ss_pred cceeccCCEEEEEecCCCEEeEEEEEeccCC--CEEEEEEcCCCe---EEEEeecc
Confidence 346999999999884 799999999998753 479999987665 45544333
No 33
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=97.17 E-value=0.0006 Score=48.99 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=39.7
Q ss_pred CCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 023917 49 SCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (275)
Q Consensus 49 ~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (275)
...|.+||-|||.|. |.+|-+.|++.. ...++|+|..=.. -||...+|.+.
T Consensus 13 a~~~~~geDVL~rw~DG~fYLGtIVd~~----~~~ClV~FeD~S~---~Wv~~kdi~kl 64 (69)
T 2xk0_A 13 AVTYALQEDVFIKCNDGRFYLGTIIDQT----SDQYLIRFDDQSE---QWCEPDKLRKL 64 (69)
T ss_dssp CCCCCTTCEEEEECTTSCEEEEEEEEEC----SSCEEEEETTCCE---EEECTTTEECS
T ss_pred ccccccCCeEEEEecCCCEEEEEEEecC----CceEEEEecCCcc---eeeeHHHHHhh
Confidence 357999999999985 699999996543 3489999987665 57776777654
No 34
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.06 E-value=0.00095 Score=46.45 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=39.4
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
.|.+||.||+.|. |..|.++|++|.... ..|+|.|..=.+ -||...+|.+
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~~--~~clV~F~D~s~---~W~~~kdi~~ 53 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQ---FLVLWKDISP 53 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETTT--TEEEEEETTSCE---EEEEGGGEEE
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecCC--CEEEEEEcCCCe---EEEEhHHccc
Confidence 4999999999985 699999999997653 489999987665 4565555544
No 35
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.98 E-value=0.0012 Score=47.26 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 50 CPYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 50 ~~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
..|.+|+-|+|.| +|+.|+|+|.+|....+ .|+|.|..=.+ -||-.-.|.
T Consensus 12 ~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~g--tC~V~F~D~s~---~w~~~kdi~ 62 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQ--SCFIIFEDSSK---SWVLWKDIQ 62 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEETTTT--EEEEEETTTEE---EEEETTTEE
T ss_pred ccccCCCEEEEEEccCcEEEeEEEEEccCCc--EEEEEEccCCE---EEEEeeccc
Confidence 3699999999998 56999999999987543 79999876554 355444443
No 36
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=96.95 E-value=0.0017 Score=58.57 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=45.2
Q ss_pred CCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 023917 49 SCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (275)
Q Consensus 49 ~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k~ 106 (275)
...|++|-++.+.+. .+++.|.|.+|.. ....|||.||...+|.|+..+ +|+..
T Consensus 141 ~~~F~vGMKLEavD~~np~~icvATV~~v~g----~rl~v~fDGw~~~~D~W~~~~Sp~I~Pv 199 (265)
T 2r58_A 141 ENLFKVGQKLEAVDKKNPQLICCATVDAIKD----DQIHVTFDGWRGAFDYWCNYRSRDIFPA 199 (265)
T ss_dssp SCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred ccccccCcEEEeccCCCCCCEEEEEEEEecC----CEEEEEeCCCCCcCCEEEECCCCCeecC
Confidence 336999999999874 4899999999963 479999999999999999875 66654
No 37
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.99 E-value=0.00013 Score=54.56 Aligned_cols=50 Identities=30% Similarity=0.340 Sum_probs=41.4
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccccc
Q 023917 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (275)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (275)
.|++||.|++.| ++.||+|+|.++... ..|.|.|.+ . -.|-|+.++|.+.
T Consensus 6 ~~kvGd~clAkwsDg~wY~A~I~~v~~~---~~y~V~F~D-G--n~E~V~~s~LrPl 56 (81)
T 2ldm_A 6 EFQINEQVLASWSDSRFYPAKVTAVNKD---GTYTVKFYD-G--VVQTVKHIHVKAF 56 (81)
Confidence 599999999988 569999999999743 279999988 3 4688888888765
No 38
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.82 E-value=0.0035 Score=47.28 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|++.+ +|.||.|+|+++... ..+.|+|.+|.. -|.|+.++|....+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~---~~~~V~fvDyGn--~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGD--NGDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT---SCEEEEETTTCC--EEEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEcCCC--eEEEEHHHhhhcCH
Confidence 578999999987 689999999999532 368999999986 68999998887643
No 39
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.003 Score=45.09 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=39.4
Q ss_pred CCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 49 SCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 49 ~~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
...|.+|+-|||.|. |++|.++|.+|.... ..++|+|..=.+ -||-...|.+
T Consensus 7 ~~~f~eGqdVLarWsDGlfYlGtV~kV~~~~--~~ClV~FeD~s~---~wv~~kdi~~ 59 (68)
T 2e5p_A 7 GPRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQ---FLVLWKDISP 59 (68)
T ss_dssp CCCCCTTCEEEEECTTSSEEEEEEEEEETTT--TEEEEEETTTEE---EEEETTTEEC
T ss_pred CcccccCCEEEEEecCCcEEEeEEEEEecCC--cEEEEEEccCCe---eeeeeecccc
Confidence 447999999999985 699999999998643 479999976554 4555545543
No 40
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.0017 Score=45.77 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=39.2
Q ss_pred CCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 50 CPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 50 ~~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
..|.+|+-|||.|. |++|.++|.+|... ...++|+|..=.+ -||-...|.+
T Consensus 6 ~~f~eGqdVLarWsDGlfYlgtV~kV~~~--~~~ClV~FeD~s~---~wv~~kdi~~ 57 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTDGLYYLGKIKRVSSS--KQSCLVTFEDNSK---YWVLWKDIQH 57 (63)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEECCCCST--TSEEEEEETTSCE---EEEEGGGEEC
T ss_pred cceecCCEEEEEecCCCEEEEEEEEEecC--CCEEEEEEccCce---eEEEeecccc
Confidence 36999999999985 69999999998764 3479999977665 4665544443
No 41
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=96.17 E-value=0.015 Score=51.68 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 023917 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (275)
Q Consensus 50 ~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k~ 106 (275)
..|++|-++.+.+. ..++.|.|+++.. ...+|||.||..++|.|+..+ +|+..
T Consensus 61 ~~f~vGmKLEa~D~~~~~~~~vATV~~v~g----~~l~l~~dG~d~~~DfW~~~~S~~I~Pv 118 (243)
T 2biv_A 61 NDFKVGMKLEARDPRNATSVCIATVIGITG----ARLRLRLDGSDNRNDFWRLVDSPDIQPV 118 (243)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEEEEEEET----TEEEEEETTSCSSSCEEEETTCTTEECT
T ss_pred ccccCCCEEEEecCCCCCcEEEEEEEEEeC----CEEEEEECCCCCCCCEeecCCCCccccC
Confidence 36999999999986 3789999999852 379999999999999999874 55543
No 42
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=96.05 E-value=0.013 Score=40.77 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=32.2
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
+|++.+..+|...|+|++.||....+.|.|++.|
T Consensus 8 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 41 (59)
T 3fdt_A 8 KVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL 41 (59)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred EEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC
Confidence 7999888889999999999999999999999998
No 43
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=95.97 E-value=0.012 Score=40.05 Aligned_cols=35 Identities=14% Similarity=0.545 Sum_probs=32.7
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+|++.+..+|...|+|++.||....+-|.|.+.|.
T Consensus 8 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3i91_A 8 ALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL 42 (54)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred EEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC
Confidence 78888888899999999999999999999999886
No 44
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=95.93 E-value=0.0082 Score=46.60 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=45.1
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCHH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (275)
.+.+|+.|++.+ ++.||.|+|+++... ..+.|+|.+|.. -|.|+.++|....++
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~---~~~~V~fvDyGn--~e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGD--NGDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS---SCEEEEETTTCC--EEEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEeCCC--eEEEehHHhhcCcHH
Confidence 478999999987 579999999998642 378999999997 589999999887653
No 45
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.90 E-value=0.013 Score=40.11 Aligned_cols=36 Identities=25% Similarity=0.623 Sum_probs=33.0
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
-+|++.+..+|...|+|.+.||....+.|.|.+.|.
T Consensus 7 E~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~ 42 (55)
T 1pfb_A 7 EKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 42 (55)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC
Confidence 478998888899999999999999999999999886
No 46
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=95.89 E-value=0.014 Score=39.82 Aligned_cols=35 Identities=14% Similarity=0.500 Sum_probs=32.7
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+|++.+..+|...|+|++.||....+.|.|.+.|.
T Consensus 8 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3h91_A 8 CILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL 42 (54)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred EEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC
Confidence 78888888899999999999999999999999886
No 47
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=95.89 E-value=0.023 Score=51.21 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=42.9
Q ss_pred CcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~~---~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+.. .++.|.|++|... .++|||.||...+|-|+..+ .|+.
T Consensus 34 ~F~vGMKLEavDp~~~~~icvATV~~v~g~----~l~l~~DG~d~~~DfW~~~~S~~I~P 89 (265)
T 2r58_A 34 DFKIGMKLEALDPRNVTSTCIATVVGVLGS----RLRLRLDGSDSQNDFWRLVDSTEIHA 89 (265)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCSSCCEEEETTCTTEEC
T ss_pred ccccCCEeEEecCCCCCCEEEEEEEEEeCC----EEEEEeCCCCCcCCEeEeCCCCCeec
Confidence 59999999999864 6899999998743 89999999999999999874 4444
No 48
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=95.86 E-value=0.016 Score=53.75 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+. .+++.|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 252 ~F~~gmKLEavD~~~p~~ic~AtV~~v~~----~~l~v~fDgw~~~~d~w~~~dS~~I~P 307 (331)
T 1oz2_A 252 SFLVNMKLEAVDRRNPALIRVASVEDVED----HRIKIHFDGWSHGYDFWIDADHPDIHP 307 (331)
T ss_dssp CCCTTCEEEEECSSSTTCEEEEEEEEECS----SEEEEEETTBCGGGCEEEETTCTTEEC
T ss_pred ccccCceeEeecccCCCcEEeeEEEEEcC----CEEEEEeCCCCCcCCEEEECCCCCccc
Confidence 6999999999875 4789999999863 369999999999999999875 5555
No 49
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=95.82 E-value=0.016 Score=55.82 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=44.3
Q ss_pred CCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 49 SCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 49 ~~~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
...|++|-++.+.+. .++.-|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 374 ~~~F~~gmkLEAvD~~np~~icvATV~~v~~----~~~~i~fDgw~~~~d~w~~~~S~dI~P 431 (447)
T 3h6z_A 374 DHGFEVGMSLECADLMDPRLVCVATVARVVG----RLLKVHFDGWTDEYDQWLDCESADIYP 431 (447)
T ss_dssp CCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEECTTSCGGGCEEEETTCTTEEC
T ss_pred CCccccCCEEEeecCCCCCcEEEEEEeEecC----CEEEEEeCCCCCcCCEEEecCCCCccc
Confidence 346999999999874 5899999999974 478999999999999999875 4544
No 50
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=95.78 E-value=0.011 Score=41.61 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=32.1
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+|++.+..+|...|+|++.||....+.|.|++.|.
T Consensus 9 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 43 (62)
T 3lwe_A 9 KILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLE 43 (62)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHT
T ss_pred EEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhh
Confidence 78888888899999999999999999999998883
No 51
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=95.76 E-value=0.02 Score=53.13 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=43.3
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+. ..++.|.|.+|... .++|||.||...+|-|+..+ +|+.
T Consensus 148 ~F~vGmKLEavD~~np~~icvATV~~v~g~----r~~v~~Dg~~~~~D~w~~~~S~~I~P 203 (331)
T 1oz2_A 148 GFQVGMKLEAVDRMNPSLVCVASVTDVVDS----RFLVHFDNWDDTYDYWCDPSSPYIHP 203 (331)
T ss_dssp TCCTTCEEEEECTTSTTCEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEEC
T ss_pred ccccccEEEeccCCCCCcEEEEEEEEeeCC----EEEEEeCCCCCccCEEEecCCCCccC
Confidence 5999999999984 48999999998743 68999999999999999874 5554
No 52
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.67 E-value=0.024 Score=41.15 Aligned_cols=41 Identities=29% Similarity=0.646 Sum_probs=35.3
Q ss_pred Ceeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 64 SHVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 64 ~~~y~A-kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
...|+. +|++.+..+|...|+|.+.||....+.|.|++.|.
T Consensus 18 ~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~ 59 (72)
T 1pdq_A 18 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 59 (72)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred CceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC
Confidence 345554 78988888899999999999999999999999875
No 53
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=95.64 E-value=0.019 Score=39.28 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=32.3
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
-+|++.+..+|...|+|++.||....+.|.|++.|
T Consensus 6 E~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 40 (55)
T 3f2u_A 6 EKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 40 (55)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC
T ss_pred EEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC
Confidence 37888888889999999999999999999999998
No 54
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=95.54 E-value=0.018 Score=40.80 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=32.1
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+|++.+..+|...|+|++.||....+.|.|++.|.
T Consensus 5 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 5 YLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC
Confidence 68888888889999999999999999999999984
No 55
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=95.45 E-value=0.02 Score=41.76 Aligned_cols=40 Identities=15% Similarity=0.493 Sum_probs=34.0
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 65 ~~y~A-kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
..|+. +|++.+..+|...|+|.+.||....+.|.|++.|.
T Consensus 20 ~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~ 60 (73)
T 2k1b_A 20 QVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 60 (73)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS
T ss_pred ceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC
Confidence 33443 78888888889999999999999999999999885
No 56
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.41 E-value=0.027 Score=40.94 Aligned_cols=37 Identities=14% Similarity=0.478 Sum_probs=32.9
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
-+|++.+..++...|+|.+.||....+.|.|++.|..
T Consensus 14 E~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 14 ECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC
T ss_pred EEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC
Confidence 3788888888899999999999999999999998864
No 57
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=95.41 E-value=0.023 Score=41.27 Aligned_cols=37 Identities=14% Similarity=0.449 Sum_probs=32.7
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
-+|++.+..++...|+|.+.||....+.|.|.+.|..
T Consensus 17 E~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~~ 53 (74)
T 2kvm_A 17 ESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD 53 (74)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCSC
T ss_pred EEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCCC
Confidence 3788888888899999999999999999999998863
No 58
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=95.41 E-value=0.016 Score=45.43 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=46.8
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
+..|.+||.|++.-+| -|+.|+|+++... .....|.|.|-|=+.+. ||+.++|+.+.+
T Consensus 17 ~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~a--wv~~~~l~pf~~ 78 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA--FLGPKDLFPYEE 78 (110)
T ss_dssp SSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEE--EECSTTEECHHH
T ss_pred cCCCCCCCEEEEEeCCCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEE--EECHHHccchhh
Confidence 4469999999998888 7999999875321 23468999999987655 999999999964
No 59
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=95.38 E-value=0.027 Score=39.37 Aligned_cols=39 Identities=15% Similarity=0.387 Sum_probs=33.4
Q ss_pred eeee-EEEEEEeeCCee-EEEEEEcCCCCCcceeeeccccc
Q 023917 66 VYEA-KVIQVQYRLKEW-TFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 66 ~y~A-kIl~i~~~~~~~-~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
.|+. +|++.+..+|.. .|+|++.||....+.|.|++.|.
T Consensus 7 ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~ 47 (61)
T 3g7l_A 7 VYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 47 (61)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT
T ss_pred EEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC
Confidence 4444 788888887777 99999999999999999999883
No 60
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=95.34 E-value=0.016 Score=46.69 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=43.0
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCC--Ccceeeecc--ccccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNK--SWDEWVGVH--RLMKD 106 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~--r~DEWV~~~--ri~k~ 106 (275)
.|++|-++.+.+. ..++-|.|+++.. ...+|||.||.. ++|-|+..+ +|+..
T Consensus 11 ~f~~GmKLEa~D~~~p~~~~vAtV~~v~g----~rl~l~~dG~~~~~~~D~W~~~~s~~I~Pv 69 (127)
T 1wjr_A 11 LITVGSLIELQDSQNPFQYWIVSVIENVG----GRLRLRYVGLEDTESYDQWLFYLDYRLRPV 69 (127)
T ss_dssp HCCTTCEEEEECSSCSSCEEEEECCCEET----TEEEECBTTCSSCCSSCEEEETTCSSCBCT
T ss_pred hccCCCEeEEecCCCCCcEEEEEEeeeeC----CEEEEEecCCCCCCCCCEeEeCCCCCcccc
Confidence 5999999999875 3788899988874 489999999999 899999874 55543
No 61
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=95.28 E-value=0.036 Score=51.23 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=43.2
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+. .++..|.|.+|. +....|||.||...+|.|+..+ .|+.
T Consensus 247 ~F~~gmkLEAvD~~~p~licvATV~~v~----g~~l~v~fDgw~~~~d~w~~~~S~dI~P 302 (324)
T 3ut1_A 247 GFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGWNNCYDYWIDADSPDIHP 302 (324)
T ss_dssp CCCTTCEEEEECSSSTTCEEEEEEEEEC----SSEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred cCCCCCeeeccCCCCCCceeEEEEEEec----CCEEEEEeCCCCCCCCEEEeCCCCCeec
Confidence 6999999999874 478999999985 3489999999999999999875 5554
No 62
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=95.26 E-value=0.038 Score=53.41 Aligned_cols=52 Identities=23% Similarity=0.442 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--ccccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k~ 106 (275)
.|++|-++.+.+. .++.-|.|.+|.. ....|||.||...+|+|+..+ .|+..
T Consensus 366 ~F~~GMKLEAvD~~np~~icvATV~~v~~----~~l~i~fDgw~~~~d~w~~~~S~~I~Pv 422 (456)
T 3f70_A 366 GFKVGMKLEAVDLMEPRLICVATVKRVVH----RLLSIHFDGWDSEYDQWVDCESPDIYPV 422 (456)
T ss_dssp CCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred ccccCCEEEeecCCCCCcEEEEEEEEecC----CEEEEEeCCCCCCCCeEeecCCCCcccc
Confidence 5999999999884 4789999999873 378999999999999999774 55543
No 63
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=95.24 E-value=0.016 Score=40.90 Aligned_cols=36 Identities=14% Similarity=0.534 Sum_probs=31.4
Q ss_pred EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 70 KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 70 kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
+|++.+..++...|+|++.||....+.|.|++.|..
T Consensus 15 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~ 50 (64)
T 2dnv_A 15 ALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD 50 (64)
T ss_dssp CEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC
T ss_pred EEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC
Confidence 577777777889999999999999999999998864
No 64
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=95.23 E-value=0.028 Score=40.52 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=33.7
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 65 ~~y~A-kIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
..|+. +|++.+..+|...|+|.+.||....+.|.|++.|
T Consensus 15 ~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL 54 (69)
T 1q3l_A 15 EEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL 54 (69)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred CcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC
Confidence 34444 7999888889999999999999999999999988
No 65
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=95.12 E-value=0.073 Score=46.46 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=44.5
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|++.+ ++.||.|+|+++... ..+.|+|.+|.. -++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~d~~wyRa~V~~~~~~---~~~~V~~vDyGn--~~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 65 APRRGEFCIAKFVDGEWYRARVEKVESP---AKIHVFYIDYGN--REVLPSTRLGTLSP 118 (246)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEET---TEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred CCCCCCEEEEEcCCCCEEEEEEEEEcCC---CeEEEEEEeCCC--eEEEeHHHhhcCCH
Confidence 467999999988 689999999999653 379999999986 57999999887753
No 66
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=95.04 E-value=0.093 Score=40.74 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=47.7
Q ss_pred CCcCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeecccccccCHHhh
Q 023917 50 CPYQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (275)
Q Consensus 50 ~~f~vge~vl~~~~~-~~y~AkIl~i~~~--------~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~ 111 (275)
..|.+|+.|++.-+| -|+.|+|++...- .+...|.|.|-|=+ . =-||+..+|..++++..
T Consensus 4 ~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~-~-~aWv~~~~l~p~~~~~~ 72 (108)
T 2l89_A 4 DRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDF-N-FAWVKRNSVKPLLDSEI 72 (108)
T ss_dssp CCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTT-E-EEEECGGGEEECCHHHH
T ss_pred CcccCCCEEEEEeCCcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCC-C-EEEEchhhceeCCHHHH
Confidence 469999999998888 7899999986532 23579999999932 2 37999999999997654
No 67
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=95.04 E-value=0.035 Score=40.21 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=32.1
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
-+|++.+..+|...|+|.+.||....+.|.|.+.|
T Consensus 17 E~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL 51 (73)
T 1ap0_A 17 EKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 51 (73)
T ss_dssp EEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC
T ss_pred EEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC
Confidence 47888888888899999999999999999999988
No 68
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=94.71 E-value=0.052 Score=40.20 Aligned_cols=41 Identities=20% Similarity=0.633 Sum_probs=33.8
Q ss_pred Ceeeee-EEEEEEee-CCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 64 SHVYEA-KVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 64 ~~~y~A-kIl~i~~~-~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+..|+. +||+.+.. +|...|+|.+.||....|-|.|++.|.
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 456666 78887764 567899999999999999999998874
No 69
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=94.48 E-value=0.079 Score=41.05 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=47.0
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEE---E-------eeCCeeEEEEEEcCCCCCcceeeecccccccCHHhh
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQV---Q-------YRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i---~-------~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~ 111 (275)
.|.+|+.|++.-.| -|+.|+|++- . ...+...|.|.|-|=+ .| -||+..+|+.+++++.
T Consensus 6 ~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~-~~-aWv~~~~l~p~~~~~~ 75 (109)
T 1h3z_A 6 NYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNK-EY-LWTGSDSLTPLTSEAI 75 (109)
T ss_dssp CCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTT-CC-EEEEGGGEEECCHHHH
T ss_pred cCCCCCEEEEEeCCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCC-CE-EEECHHHeeeCCchHH
Confidence 59999999998888 7999999942 1 1112568999999977 44 8999999999998754
No 70
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=94.13 E-value=0.1 Score=50.11 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+. ..+..|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 362 ~F~~GMKLEAvD~~np~~IcvATV~~v~~----~~l~v~fDgw~~~~d~w~~~~S~~I~P 417 (437)
T 3feo_A 362 GFRVGMKLEAVDLMEPRLICVATVTRIIH----RLLRIHFDGWEEEYDQWVDCESPDLYP 417 (437)
T ss_dssp CCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred cCccCCEEEeecCCCCCcEEEEEEeEEcC----CEEEEEECCCCCcCCeEEeCCCCCccc
Confidence 5999999999974 4889999999973 388999999999999999774 5554
No 71
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=93.99 E-value=0.16 Score=43.01 Aligned_cols=52 Identities=27% Similarity=0.273 Sum_probs=43.1
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|++.+ ++.||.|+|+++.. ..+.|+|.+|.. -+.|+.++|....+
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~----~~~~V~~vDyG~--~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG----SNATVLYIDYGN--KETLPTNRLAALPP 104 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET----TEEEEEETTTCC--EEEEEGGGEEECCG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC----CeEEEEEEecCC--eEEEchHHcccCCh
Confidence 467999999987 47999999999864 479999999986 57898888877654
No 72
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=93.98 E-value=0.081 Score=43.92 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=39.5
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|++.+ +|.||.|+|+++...+ .+.|+|.+|... +.| ++|....+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~---~~~V~fvDyGn~--~~v--~~lr~l~~ 99 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG---KCEVHFIDFGNN--AVT--QQFRQLPE 99 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT---CEEEEETTTTEE--EEE--SCEECCCH
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC---EEEEEEEecCCe--EEh--hhhhccCH
Confidence 478999999987 5799999999986532 799999999875 333 66666543
No 73
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=93.70 E-value=0.089 Score=38.34 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=31.8
Q ss_pred eeee-EEEEEEee-CCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 66 VYEA-KVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 66 ~y~A-kIl~i~~~-~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
.|+. +||+.+.. +|...|+|++.||....+-|.|++.|.
T Consensus 21 ~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 61 (75)
T 2rsn_A 21 VYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 61 (75)
T ss_dssp CEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT
T ss_pred eEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc
Confidence 4444 67877764 467899999999999999999998884
No 74
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=93.59 E-value=0.11 Score=43.28 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=48.5
Q ss_pred CCCCCcCCCCEEEEEeCC-eeeeeEEEEEEee----------------------------CCeeEEEEEEcCCCCCccee
Q 023917 47 PASCPYQVNEKVLAFFQS-HVYEAKVIQVQYR----------------------------LKEWTFRVHYLGWNKSWDEW 97 (275)
Q Consensus 47 ~~~~~f~vge~vl~~~~~-~~y~AkIl~i~~~----------------------------~~~~~Y~VHY~GWn~r~DEW 97 (275)
.+.+.|+.|+.|++.-.| -||.|.|++-... .+...|.|.|-|=+..| -|
T Consensus 32 ~~~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~-aW 110 (158)
T 3pfs_A 32 EDRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTW-QW 110 (158)
T ss_dssp SCCSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCE-EE
T ss_pred CcCCCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCce-Ee
Confidence 345579999999998887 7999999884331 13568999999933334 69
Q ss_pred eecccccccCHHh
Q 023917 98 VGVHRLMKDTEAN 110 (275)
Q Consensus 98 V~~~ri~k~t~en 110 (275)
|+.++|..++.+.
T Consensus 111 V~~~~L~Pl~~d~ 123 (158)
T 3pfs_A 111 LPRDKVLPLGVED 123 (158)
T ss_dssp EEGGGEEECSSCH
T ss_pred eccccEeecCCch
Confidence 9999999998655
No 75
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=93.54 E-value=0.028 Score=46.27 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=44.6
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
.|.+|+.|++.-+| -|++|+|+..... .....|.|.|-|-+.+ -||...+|+.+++
T Consensus 22 ~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~--awv~~~~l~~f~e 81 (153)
T 4fu6_A 22 DFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHET--AFLGPKDIFPYSE 81 (153)
T ss_dssp GCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCE--EEECGGGEEEHHH
T ss_pred CCCCCCEEEEeCCCCCCCCEEEeEchhhccCCCCCEEEEEecCCCCe--EEeCHHHccChHh
Confidence 59999999998888 7999999876432 1235899999997754 5999999999864
No 76
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=93.46 E-value=0.21 Score=46.11 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=42.4
Q ss_pred CcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~~---~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+.. .+.-|.|.+|.. ..+.|||.||...+|-|+..+ .|+.
T Consensus 143 ~F~vGMKLEavDp~~p~~icvATV~~V~g----~~l~v~~Dg~~~~~d~w~~~~Sp~I~P 198 (324)
T 3ut1_A 143 GFRVGMKLEAVDKKNPSFICVATVTDMVD----NRFLVHFDNWDESYDYWCEASSPHIHP 198 (324)
T ss_dssp SCCTTCEEEEEETTEEEEEEEEEEEEEET----TEEEEEETTSCGGGCEEECTTCTTEEC
T ss_pred ccccCCEEEEecCCCCCcEEEEEEEEEEC----CEEEEEECCCCCcCCEEEECCCCCccc
Confidence 59999999999863 688999998863 259999999999999999875 4554
No 77
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=93.40 E-value=0.14 Score=41.19 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEee-------CCeeEEEEEEcCCCCCcceeeecccccccCHHh
Q 023917 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYR-------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEAN 110 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~-------~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en 110 (275)
+..|.+|+.|++.-+| -|+.|+|++.... .....|.|.|-|=...| -||+..+|+.+++..
T Consensus 20 ~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-aWv~~~~l~pf~~~~ 88 (134)
T 2gfu_A 20 SSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-GWVSKRLLKPYTGSK 88 (134)
T ss_dssp SCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-EEECGGGEEESCCTT
T ss_pred CCCCCCCCEEEEeecCCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-EEECHHHcccCcchh
Confidence 4469999999998777 7899999986321 12358999999853222 599999999987644
No 78
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=93.20 E-value=0.21 Score=42.43 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=42.9
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|.+.+ ++.||.|+|+++... ..+.|+|.+|.. -++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~---~~~~V~~vDyG~--~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS---GNVKVHFVDYGN--VEEVTTDQLQAILP 119 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT---SCEEEEETTTCC--EEEECGGGEEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEccCC--EEEEEHHHhccChH
Confidence 467999999987 469999999998643 258899999987 58999999887643
No 79
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=93.08 E-value=0.24 Score=42.84 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=43.1
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|.+.+ +|.||.|+|+++... ..+.|+|.+|.. -++|+.++|+...+
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~---~~~~V~~vDyGn--~~~v~~~~l~~l~~ 119 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS---GNVKVHFVDYGN--VEEVTTDQLQAILP 119 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSS---SEEEEECTTTCC--EEEEEGGGEECCCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEecCC--EEEEEHHHhccChH
Confidence 467899999986 469999999998643 268999999986 58999999887654
No 80
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=92.63 E-value=0.28 Score=48.28 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=45.2
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
...+|+.|++.+ ++.||.|+|+++.. ...+.|+|.+|.. -++|+.++|+...+
T Consensus 411 ~~~~G~~c~a~~~d~~wyRa~I~~v~~---~~~~~V~fvDyGn--~e~v~~~~Lr~l~~ 464 (570)
T 3bdl_A 411 APRRGEFCIAKFVDGEWYRARVEKVES---PAKIHVFYIDYGN--REVLPSTRLGTLSP 464 (570)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEE---TTEEEEEETTTCC--EEEECGGGEECCCG
T ss_pred CCCcCCEEEEEECCCCEEEEEEEEEcC---CCeEEEEEEeCCC--eEEEEHHHCccCCH
Confidence 477999999988 78999999999976 2479999999996 67899999887753
No 81
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=92.56 E-value=0.089 Score=38.48 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=28.5
Q ss_pred EEEEEEe-eCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQY-RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~-~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+||+.+. .++...|+|++.||....+.|.+++.|.
T Consensus 18 ~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~ 53 (78)
T 2dnt_A 18 RIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV 53 (78)
T ss_dssp CEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT
T ss_pred EEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH
Confidence 4555554 3567899999999999999999999885
No 82
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=92.44 E-value=0.063 Score=40.71 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=44.6
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee---CCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR---LKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~---~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.|.+||.|++.-+| -|+.|+|+++... .....|.|.|-|-+.+ -||+.++|+.+.
T Consensus 5 ~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~--awv~~~~l~pf~ 63 (94)
T 3qby_A 5 AFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHET--AFLGPKDLFPYD 63 (94)
T ss_dssp CCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCE--EEECGGGEEEHH
T ss_pred cCccCCEEEEecCCCCCCCEEEeecccccccCCCCEEEEEEEcCCCc--ceEchhHeeEHH
Confidence 59999999998877 7899999987421 1235899999997653 599999999986
No 83
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=92.09 E-value=0.21 Score=37.78 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=27.9
Q ss_pred EEEEEEe--eCCeeEEEEEEcCCCC-Ccceeeeccccc
Q 023917 70 KVIQVQY--RLKEWTFRVHYLGWNK-SWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~--~~~~~~Y~VHY~GWn~-r~DEWV~~~ri~ 104 (275)
+||+.+. .+|...|+|++.||.. ..+-|.|+..|.
T Consensus 35 ~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~ 72 (92)
T 2rso_A 35 KVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCS 72 (92)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGG
T ss_pred EEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHh
Confidence 5676664 3467899999999984 788999998873
No 84
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=91.94 E-value=0.12 Score=40.02 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=45.1
Q ss_pred CCCCcCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 48 ASCPYQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 48 ~~~~f~vge~vl~~~~~-~~y~AkIl~i~~~--------~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
++-.|.+|+.|++.-+| -|++|+|++.... .....|.|+|-|=+. =-||+.++|+.+++
T Consensus 5 ~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~--~awv~~~~l~p~~~ 72 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHD--YYWVHQGRVFPYVE 72 (110)
T ss_dssp CCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTE--EEEECSSSSEECCS
T ss_pred CCCCCCCCCEEEEEeCCCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCC--EEEEcHHHCcCcch
Confidence 45579999999998877 7999999987421 123579999999332 24999999988865
No 85
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=91.92 E-value=0.049 Score=39.06 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=28.7
Q ss_pred EEEEEEeeC-CeeE-EEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQYRL-KEWT-FRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~~~-~~~~-Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+|++.+..+ |... |+|++.||....+.|.|.+.|.
T Consensus 13 ~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~ 49 (70)
T 1g6z_A 13 RIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS 49 (70)
T ss_dssp SCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS
T ss_pred EEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh
Confidence 466666555 6667 9999999999999999998874
No 86
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=91.83 E-value=0.13 Score=42.56 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEee----CCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~----~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
+..|.+|+.|++.-.| -|+.|+|++.... .....|.|.|-|-+.+ -||..++|+.+++
T Consensus 14 g~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~--awv~~~~L~pf~e 76 (154)
T 3llr_A 14 GRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKF--SVVCVEKLMPLSS 76 (154)
T ss_dssp SCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCE--EEEEGGGEEEGGG
T ss_pred CCCCccCCEEEEecCCCCCCCEEEecccccccccCCCCEEEEEEeCCCCE--EEEcHHHCcchhh
Confidence 4469999999998777 7899999987521 1234899999999965 6999999999865
No 87
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=91.11 E-value=0.28 Score=40.22 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=45.7
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEeeC----CeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYRL----KEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~~----~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
+..|.+|+.|++.-.| -|+.|+|++..... ....|.|.|-|-+. | -||..++|+.+++
T Consensus 9 ~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~-~-awv~~~~L~p~~~ 71 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGK-F-SEISADKLVALGL 71 (147)
T ss_dssp SSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCC-E-EEEEGGGCEETTS
T ss_pred CccCcCCCEEEEecCCcCCCCEEeccchhhhcccCCCCeEEEEEecCCC-E-EEEcHHHCccchH
Confidence 4469999999998777 79999999765421 12489999999764 2 7999999998764
No 88
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=90.98 E-value=0.9 Score=35.94 Aligned_cols=53 Identities=11% Similarity=0.250 Sum_probs=41.8
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
.+.+|++|.|.|. +.+|.++|+++... ..|-|+|.+ -+|=.+.++..|....-
T Consensus 5 ~v~vGq~V~akh~ngryy~~~V~~~~~~---~~y~V~F~D--gS~s~dl~peDIvs~dc 58 (118)
T 2qqr_A 5 SITAGQKVISKHKNGRFYQCEVVRLTTE---TFYEVNFDD--GSFSDNLYPEDIVSQDC 58 (118)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEEEE---EEEEEEETT--SCEEEEECGGGBCSSCH
T ss_pred eeccCCEEEEECCCCCEEeEEEEEEeeE---EEEEEEcCC--CCccCCCCHhhcccccc
Confidence 4789999999996 58999999999764 689999983 44556788777766544
No 89
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=89.96 E-value=0.36 Score=40.97 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.3
Q ss_pred CCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 023917 49 SCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~GW 90 (275)
...|..|++||+++.+ ..|.|.|.....+ ....|.|.|.|=
T Consensus 114 ~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~-~~~~y~L~FEdd 156 (180)
T 3mea_A 114 EALFQKEQLVLALYPQTTCFYRALIHAPPQR-PQDDYSVLFEDT 156 (180)
T ss_dssp GGSCCTTCEEEEECTTSSEEEEEEEEECCSS-TTCCEEEEEBCT
T ss_pred cccCCCCCEEEEeCCCCceeeEEEEecCCCC-CCCcEEEEEcCC
Confidence 3469999999999975 7999999987543 335799999874
No 90
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=89.23 E-value=0.83 Score=37.89 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=34.1
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEee----------------CCeeEEEEEEcCCC
Q 023917 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYR----------------LKEWTFRVHYLGWN 91 (275)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~----------------~~~~~Y~VHY~GWn 91 (275)
.|++||.|-|.+. |-|+||+|++|-.. .....|-|-|.+|-
T Consensus 10 lYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddyp 68 (161)
T 3db3_A 10 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYP 68 (161)
T ss_dssp SSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCG
T ss_pred eEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCc
Confidence 7999999999984 79999999997653 13468999999884
No 91
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.79 E-value=1.8 Score=32.22 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=41.0
Q ss_pred CCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccCH
Q 023917 49 SCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (275)
Q Consensus 49 ~~~f~vge~vl~~~--~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (275)
....++|+-|-|.. ++.||-|+|+.+.... ..-|-|..+.. -+-|+.++|+...+
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~---~veVl~~DyGn--~~~V~~~~LR~L~~ 75 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDT---LVEVLLYDVGV--ELVVNVDCLRKLEE 75 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSS---EEEEECTTTCC--EEEEETTTEEECCH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCC---eEEEEEEccCC--EEEEEccccccCCH
Confidence 44688999998874 4599999999998754 34455656654 48889999888654
No 92
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=88.50 E-value=0.89 Score=39.87 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=34.6
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeC-------CeeEEEEEEcCCC
Q 023917 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRL-------KEWTFRVHYLGWN 91 (275)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~~-------~~~~Y~VHY~GWn 91 (275)
.|+|||.|-|.+. |.||+|+|+.|.... ....|-|-|.++.
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~ 51 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYP 51 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCG
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCc
Confidence 5899999999984 789999999998732 3478999999884
No 93
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=87.50 E-value=0.71 Score=44.27 Aligned_cols=42 Identities=29% Similarity=0.284 Sum_probs=34.1
Q ss_pred CCCCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCC
Q 023917 46 TPASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGW 90 (275)
Q Consensus 46 ~~~~~~f~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~GW 90 (275)
..+...|.+|++||+.+.. ..|.|.|...... ..|.|+|.|=
T Consensus 452 ~~~~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~---~~~~~~f~~~ 495 (522)
T 3mp6_A 452 GFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRD---GTCRLRFDGE 495 (522)
T ss_dssp SCCCCCCCTTCEEEEECTTCSEEEEEEEEEECTT---SCEEEEETTC
T ss_pred CCcccCCCCCCEEEEECCCCcceEeEEEecCCCC---CeEEEEecCC
Confidence 3455679999999999975 8999999986443 2699999983
No 94
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=87.20 E-value=0.62 Score=37.14 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=41.2
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccccC
Q 023917 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (275)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (275)
.+.+|++|.|.|. |.+|.++|+.+.. +..|-|+|. .-+|=.++.++.|....
T Consensus 6 ~v~vGq~V~ak~~ngryy~~~V~~~~~---~~~y~V~F~--DgS~s~dl~PedIvs~d 58 (123)
T 2xdp_A 6 VISVGQTVITKHRNTRYYSCRVMAVTS---QTFYEVMFD--DGSFSRDTFPEDIVSRD 58 (123)
T ss_dssp CCCTTCCCCCCCCCCCCCCCEEEEEEE---EEEEEEEET--TSCEEEEECGGGBCSSC
T ss_pred ccccCCEEEEECCCCcEEeEEEEEEee---EEEEEEEcC--CCCccCCCCHhHccccc
Confidence 4789999999997 7999999999986 568999998 44455677777775543
No 95
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=86.70 E-value=1.1 Score=43.30 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=37.5
Q ss_pred CcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~~---~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|.+|-+|.+.+.. ....|.|.+|. +..|+|||.||..++|-|+..+ +|+.
T Consensus 153 ~F~~GmkLE~vD~~~~~~~~vAtV~~v~----g~rl~l~~~~~~~~~dfWc~~~Sp~IhP 208 (456)
T 3f70_A 153 PFRQGMRLEVVDKSQVSRTRMAVVDTVI----GGRLRLLYEDGDSDDDFWCHMWSPLIHP 208 (456)
T ss_dssp SSCTTCEEEEECTTCTTCEEEEEEEEEE----TTEEEEEECC----CCEEEETTCTTEEE
T ss_pred CCCCCCEEEEECCCCCcceEEEEEEEEE----CCEEEEEEcCCCCCCceEEeCCCCCeec
Confidence 59999999999864 56678888875 2489999999999999999774 4543
No 96
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=86.50 E-value=0.4 Score=38.63 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=45.7
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee----------------------------CCeeEEEEEEcCCCCCcceeeecc
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR----------------------------LKEWTFRVHYLGWNKSWDEWVGVH 101 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~----------------------------~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (275)
.|+.|+.|++.-.| -||.|.|++-... .+...|.|.|-| +++==-||+.+
T Consensus 5 ~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd-~~~t~aWv~~~ 83 (130)
T 3l42_A 5 PLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFD-NKRTWQWLPRT 83 (130)
T ss_dssp SSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESS-TTCCEEEEEGG
T ss_pred cCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCC-CCCceEeeccc
Confidence 59999999998877 7999999873321 125689999999 44444699999
Q ss_pred cccccCHHh
Q 023917 102 RLMKDTEAN 110 (275)
Q Consensus 102 ri~k~t~en 110 (275)
.|..++.++
T Consensus 84 ~i~pl~~d~ 92 (130)
T 3l42_A 84 KLVPLGVNQ 92 (130)
T ss_dssp GEEESSSCH
T ss_pred ceeecCCch
Confidence 999987655
No 97
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=85.48 E-value=2 Score=37.27 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCCCCCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc
Q 023917 45 PTPASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (275)
Q Consensus 45 ~~~~~~~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (275)
|..|...+.+|+.+..-+.|.|+.|+|++++-. .-.|+|.+=++ -|||-.+
T Consensus 152 P~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~S----Lv~v~f~~dkr--~EWIYRG 202 (213)
T 3dlm_A 152 PNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGS----LVRILFLDDKR--CEWIYRG 202 (213)
T ss_dssp TCCCCCCCCTTCEEEEEETTEEEEEEEEEEETT----EEEEEETTTTE--EEEEETT
T ss_pred CCCceEEcCCCCEEEEEecCcEEEEEEEEEcce----eEEEEEcCCCe--eEEEEcC
Confidence 467888999999999999999999999999753 67789998775 3999764
No 98
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=85.11 E-value=1.7 Score=37.65 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=41.6
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
.+.||..|++.+. +.||.++|++|....++.+|.|-|.+=. +.-|+..+|--
T Consensus 8 ~l~Vg~~vlg~k~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g---~~ivs~~hiA~ 60 (213)
T 3dlm_A 8 DLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKG---KSLLSGNHIAY 60 (213)
T ss_dssp TEETTCEEEEECTTSBEEEEEEEEEEEETTEEEEEEEESSSC---EEEECGGGEEE
T ss_pred cEEEccEEEEEecCCcEEEEEEEEEEECCCCeEEEEEEcCCC---CEEeecceEEE
Confidence 4789999999986 5999999999999888899999998422 35566665543
No 99
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=82.45 E-value=1.5 Score=35.03 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=33.8
Q ss_pred CCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcC-CCCCcceeeeccccccc
Q 023917 54 VNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLG-WNKSWDEWVGVHRLMKD 106 (275)
Q Consensus 54 vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~G-Wn~r~DEWV~~~ri~k~ 106 (275)
.+..|-+.. .|.||+|.|.++.. ..++|+|.+ |.. .++|+.+.|+-.
T Consensus 4 ~~~~VEV~~~~G~~y~a~V~~v~~----d~~~V~f~n~w~~--~~~vp~~~vRlp 52 (128)
T 3h8z_A 4 QGLPVEVRGSNGAFYKGFVKDVHE----DSVTIFFENNWQS--ERQIPFGDVRLP 52 (128)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECS----SEEEEEETTCTTC--CEEEEGGGEECC
T ss_pred cccEEEEecCCCCEEEEEEEEEeC----CcEEEEEccccCc--ceEechhhEEcC
Confidence 345565544 57999999998743 369999964 553 689999877654
No 100
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=78.91 E-value=0.16 Score=34.62 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=25.3
Q ss_pred EEEEEEeeC-Cee-EEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQYRL-KEW-TFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~~~-~~~-~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+|++.+..+ |.. .|+|++.|| .-+.|-|++.|-
T Consensus 5 ~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL~ 39 (54)
T 1x3p_A 5 SVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD 39 (54)
T ss_dssp CCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCSS
T ss_pred EEEEEEEcCCCcEEEEEEEECCC--CcCCccchHHCC
Confidence 355555555 666 899999999 579999998874
No 101
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=78.34 E-value=4.7 Score=33.36 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=30.0
Q ss_pred CcCCCCEEEEEeC-------CeeeeeEEEEEEeeCCeeEEEEE-EcCC
Q 023917 51 PYQVNEKVLAFFQ-------SHVYEAKVIQVQYRLKEWTFRVH-YLGW 90 (275)
Q Consensus 51 ~f~vge~vl~~~~-------~~~y~AkIl~i~~~~~~~~Y~VH-Y~GW 90 (275)
.++||+.|++-|. |.||+|+|.+.+......+-+++ +.|-
T Consensus 92 ~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~~rT~rEl~~~i~LG~ 139 (161)
T 3db3_A 92 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGD 139 (161)
T ss_dssp GCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEECSSCEEEEEEEECSS
T ss_pred HCCcCcEEEEecCCCCccccceeEEEEEeeehhhhhhheeEEEEEECC
Confidence 4889999999774 78999999998765544444444 4555
No 102
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=78.24 E-value=1.7 Score=35.90 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.7
Q ss_pred CCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEc-CCCC
Q 023917 53 QVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYL-GWNK 92 (275)
Q Consensus 53 ~vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~-GWn~ 92 (275)
.+|++|++.|.+ -+|.++|..... ..+|.|.|. |..+
T Consensus 10 ~iG~rVfArWsd~~yyYpG~V~~~~~---~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYFYSGKITRDVG---AGKYKLLFDDGYEC 49 (156)
T ss_dssp STTCEEEECSSCSSEEEEEEEEECCT---TTEEEEECTTSCEE
T ss_pred hhccEEEEEcCCCCcccccEEEEecc---CCEEEEEEcCCCee
Confidence 699999999965 577999998643 347999984 6655
No 103
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=72.38 E-value=5.9 Score=32.41 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCEEEEEeCC---eeeeeEEEEEEee--CCeeEEEEEEcCCCC
Q 023917 55 NEKVLAFFQS---HVYEAKVIQVQYR--LKEWTFRVHYLGWNK 92 (275)
Q Consensus 55 ge~vl~~~~~---~~y~AkIl~i~~~--~~~~~Y~VHY~GWn~ 92 (275)
-.+|+++|.| -+|+|.|+..... .+...|.|+|..=+.
T Consensus 9 ~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~ 51 (153)
T 2fhd_A 9 KNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATM 51 (153)
T ss_dssp GGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCE
T ss_pred cceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCC
Confidence 4579999986 6899999998865 567899999986553
No 104
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=71.08 E-value=1 Score=38.27 Aligned_cols=33 Identities=15% Similarity=0.419 Sum_probs=27.0
Q ss_pred EEEeeCCeeEEEEEEcCCCCCcceeeecccccc
Q 023917 73 QVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 73 ~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
+-+..++...|+|.|.||+..++.|++...|..
T Consensus 50 d~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~ 82 (187)
T 2b2y_A 50 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQ 82 (187)
T ss_dssp C-CCSCCEEEEEEEETTSCGGGCEEECHHHHHH
T ss_pred CccccCCcEEEEEEECCCCcccCeeCCHHHhCc
Confidence 333456778999999999999999999988764
No 105
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=70.20 E-value=0.71 Score=36.39 Aligned_cols=33 Identities=15% Similarity=0.414 Sum_probs=28.5
Q ss_pred EEEEeeCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 72 IQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 72 l~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
++-+...|...|+|-+.||+...+-|-|.+.|.
T Consensus 49 ldkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~ 81 (115)
T 2b2y_C 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLK 81 (115)
T ss_dssp CCTTSSSCEEEEEEEETTSCGGGCEEECHHHHH
T ss_pred cccceeCCcEEEEEEECCCCchhcccCCHHHcC
Confidence 555566788999999999999999999998774
No 106
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=64.03 E-value=2.7 Score=42.67 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 78 LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 78 ~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
++..+|||-|.||+..++.|++++.|.
T Consensus 69 ~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 69 KENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp HHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred cCceEEEEEeCCcceeeccccCHHHHh
Confidence 456799999999999999999998775
No 107
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=63.26 E-value=14 Score=32.13 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=24.7
Q ss_pred CcCCCCEEEEEe-------CCeeeeeEEEEEEeeC
Q 023917 51 PYQVNEKVLAFF-------QSHVYEAKVIQVQYRL 78 (275)
Q Consensus 51 ~f~vge~vl~~~-------~~~~y~AkIl~i~~~~ 78 (275)
.+++|..|++.+ .|.||.|+|+.++...
T Consensus 75 ~l~~g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 75 DLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp GCCTTCEEEEEECTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccccCcEEEEecccCCccccCceeehhhhhhhhcc
Confidence 478999999988 5899999999998764
No 108
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.79 E-value=14 Score=25.92 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=22.2
Q ss_pred eeEEEEEEcCCCCCcceeeecccc
Q 023917 80 EWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 80 ~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
...|+|.+.|+...-.-|-+++.|
T Consensus 32 ~~eYLVKWkgl~y~e~TWE~~~~l 55 (68)
T 2epb_A 32 VTHYLVKWCSLPYEESTWELEEDV 55 (68)
T ss_dssp EEEEEEECTTSCGGGCCEEETTTS
T ss_pred ceEEEEEEcCCChhcCccccchhc
Confidence 679999999999999999999887
No 109
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=57.57 E-value=7.5 Score=28.71 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=37.0
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeec
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGV 100 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~ 100 (275)
.-.+||++++... ..-..+.|+++...+|.+-|.|+| |..-+.-+|-+
T Consensus 5 ~A~vGDrlvv~g~~vg~~~R~GeIvEV~g~dG~PPY~VRw--~ddGHe~lv~P 55 (83)
T 2a7y_A 5 HAKVGDYLVVKGTTTERHDQHAEIIEVRSADGSPPYVVRW--LVNGHETTVYP 55 (83)
T ss_dssp CCCTTEEEEESCTTTSCCEEEEEEEECSCSSSCSCEEEEE--TTTTEEEEECC
T ss_pred CccCCCEEEEecCcCCCCCcEEEEEEEECCCCCCCEEEEe--cCCCcEEEEec
Confidence 3568999888653 367899999999999999999998 34455666644
No 110
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=54.65 E-value=3.9 Score=34.24 Aligned_cols=26 Identities=8% Similarity=0.307 Sum_probs=23.5
Q ss_pred eeEEEEEEcCCCCCcceeeecccccc
Q 023917 80 EWTFRVHYLGWNKSWDEWVGVHRLMK 105 (275)
Q Consensus 80 ~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (275)
...|||-|.||+..++.|+++..|..
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~ 71 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQ 71 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCS
T ss_pred ceEEEEEECCCccccCeecCHHHHhh
Confidence 47999999999999999999988763
No 111
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=50.54 E-value=54 Score=31.11 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=33.9
Q ss_pred CcCCCCEEEEEeCC---eeeeeEEEEEEeeCCeeEEEEEEcCCCCC--cceee
Q 023917 51 PYQVNEKVLAFFQS---HVYEAKVIQVQYRLKEWTFRVHYLGWNKS--WDEWV 98 (275)
Q Consensus 51 ~f~vge~vl~~~~~---~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r--~DEWV 98 (275)
.|++|-++.+.+.. .+.-|.|.+|.. +....|||.||... +|-|.
T Consensus 254 ~F~~GMKLEavDp~~p~~icvATV~~v~~---~g~l~l~~Dg~~~~~~~d~~~ 303 (437)
T 3feo_A 254 WFKEGMKLEAIDPLNLSTICVATIRKVLA---DGFLMIGIDGSEAADGSDWFC 303 (437)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEEEECG---GGEEEEEETTCCC-CCTTCEE
T ss_pred ccccCCEEEEEcCCCCceEEEEEEEEEcc---CCEEEEEeCCCCCCCCCCeEE
Confidence 49999999999864 677888888752 22456999999754 37787
No 112
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=48.45 E-value=22 Score=23.65 Aligned_cols=30 Identities=7% Similarity=0.146 Sum_probs=24.6
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCe
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKE 80 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~ 80 (275)
.|.+||.|.+..|+ .-++++|.++...++.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~ 34 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGK 34 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCE
Confidence 58999999999987 5689999999765443
No 113
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=45.06 E-value=41 Score=26.50 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=26.2
Q ss_pred CCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcC
Q 023917 54 VNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLG 89 (275)
Q Consensus 54 vge~vl~~~~~--~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (275)
+|-+|++.|.. .+|..+|..... ..+|.|-|..
T Consensus 7 ~G~rV~AkWsdn~~yYpG~V~~~~~---~~ky~V~FdD 41 (123)
T 2g3r_A 7 VGLRVVAKWSSNGYFYSGKITRDVG---AGKYKLLFDD 41 (123)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEE---TTEEEEEETT
T ss_pred cceEEEEEeccCCcCcccEEEEecc---CCeEEEEEcC
Confidence 79999999964 699999988543 3489999853
No 114
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=44.53 E-value=40 Score=32.15 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=38.7
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCcceeeecc--cccc
Q 023917 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (275)
Q Consensus 51 ~f~vge~vl~~~~---~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (275)
.|++|-++.+.+. ..+..|.|.++... .|+|||.|- ..|-|+..+ +|+.
T Consensus 156 ~F~~GmkLE~vD~~~~~~i~vAtV~~v~g~----rl~l~~~d~--~~dfwc~~~Sp~I~P 209 (447)
T 3h6z_A 156 RFRLGLNLECVDKDRISQVRLATVTKIVGD----RLFLRYFDS--DDGFWCHEDSPIIHP 209 (447)
T ss_dssp SSCTTCEEEEECTTCTTEEEEEEEEEEETT----EEEEEETTC--SCEEEEETTCTTEEC
T ss_pred ccCCCCEEEEEcCCCCccEEEEEEEEEECC----cEEEEEECC--CCCEEEeCCCCCccc
Confidence 5999999999985 47888999888743 799999663 689999874 4554
No 115
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=41.62 E-value=46 Score=23.62 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=26.7
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
.+|+.....+|...|+|+|.|... =+||+...+
T Consensus 19 ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a 51 (74)
T 2fmm_A 19 ERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEA 51 (74)
T ss_dssp EEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHH
T ss_pred eEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHH
Confidence 578888888899999999999775 259987654
No 116
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=37.60 E-value=59 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCCCEEEEEeC-CeeeeeEEEEEEeeCCeeEEEEEEcC
Q 023917 53 QVNEKVLAFFQ-SHVYEAKVIQVQYRLKEWTFRVHYLG 89 (275)
Q Consensus 53 ~vge~vl~~~~-~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (275)
.+|+.|.+.|. |..|.|+.+..... ..|-|-|..
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~~~---~~YtV~FeD 100 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSNIA---HMYQVEFED 100 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEECTT
T ss_pred CCCCEEEEEcCCCCEEeEEEeeeeeE---EEEEEEECC
Confidence 48999999996 79999999887653 478787753
No 117
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=36.18 E-value=13 Score=31.48 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.2
Q ss_pred eeEEeCChhHHHHHHHHHHHHhhcCce
Q 023917 165 FVNIQIPPPLKKQLVDDCEFITHLGKL 191 (275)
Q Consensus 165 ~i~i~iP~~Lk~~LvdD~~~I~~~~~L 191 (275)
.-++.+|++||.+|..||.++.-.++.
T Consensus 46 tET~~LPeSLkALLAYD~~L~sp~~~~ 72 (225)
T 4hg1_A 46 TETTELPESLXALLAYDRDLLSNYNMP 72 (225)
T ss_dssp CCEECCCHHHHHHHHHCTTCBCTTSCB
T ss_pred cccccCcHHHHHHHHhhhhccCcCCCc
Confidence 357899999999999999998654443
No 118
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=34.52 E-value=82 Score=24.54 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcC
Q 023917 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLG 89 (275)
Q Consensus 53 ~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY~G 89 (275)
..|+.|.+.| +|..|.|+.+..... ..|-|-|..
T Consensus 65 ~~G~~V~V~W~DG~~y~a~f~g~~~~---~~Y~V~feD 99 (118)
T 2qqr_A 65 AEGEVVQVRWTDGQVYGAKFVASHPI---QMYQVEFED 99 (118)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEEETT
T ss_pred CCCCEEEEEcCCCCEeeeEEeceeEE---EEEEEEECC
Confidence 3899999999 579999998876543 478887754
No 119
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.52 E-value=1.2e+02 Score=21.12 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=16.3
Q ss_pred CCCcCCCCEEEEEeC--CeeeeeE
Q 023917 49 SCPYQVNEKVLAFFQ--SHVYEAK 70 (275)
Q Consensus 49 ~~~f~vge~vl~~~~--~~~y~Ak 70 (275)
.+.|..||.|.++.. +.|+.++
T Consensus 35 eLs~~~Gd~i~v~~~~~~~Ww~~~ 58 (85)
T 2yuq_A 35 ELALRRNEEYCLLDSSEIHWWRVQ 58 (85)
T ss_dssp BCCCCBTEEEEEEECCSSSEEEEE
T ss_pred cCCCCCCCEEEEEEecCCCeEEEE
Confidence 446999999988874 3677764
No 120
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=30.98 E-value=95 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 023917 195 PRTPNVDDILEKYCDYRS 212 (275)
Q Consensus 195 Pa~~tV~~Il~~Y~~~~~ 212 (275)
|..+|+.+.+++|+.++.
T Consensus 4 ~~~~t~~~~~~~fl~~l~ 21 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ 21 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 677899999999999887
No 121
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=30.83 E-value=45 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=27.6
Q ss_pred EEEEEEe-----eCCeeEEEEEEcCCCCCcceeeeccccc
Q 023917 70 KVIQVQY-----RLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 70 kIl~i~~-----~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
+||+.+. .++...|+|-+.|+...-..|.+++.|.
T Consensus 125 rIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~ 164 (177)
T 2h1e_A 125 RIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIV 164 (177)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHH
T ss_pred EEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhh
Confidence 4566554 4677899999999998888899987653
No 122
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=28.47 E-value=42 Score=28.05 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=27.5
Q ss_pred EEEEEEe---eCCeeEEEEEEcCCCCCcceeeecccc
Q 023917 70 KVIQVQY---RLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (275)
Q Consensus 70 kIl~i~~---~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (275)
+||+.+. .++...|+|.+.|+...-..|.+++.|
T Consensus 135 rIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i 171 (187)
T 2b2y_A 135 RIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALI 171 (187)
T ss_dssp EEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHH
T ss_pred EEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhh
Confidence 5777665 467889999999999777789998755
No 123
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=27.28 E-value=1e+02 Score=22.01 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCceeEEeCChhHHHHHHHHHHHHhhcCceeeCCCCCCHHHHHHHHHHhh
Q 023917 162 MENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 211 (275)
Q Consensus 162 ~~~~i~i~iP~~Lk~~LvdD~~~I~~~~~L~~LPa~~tV~~Il~~Y~~~~ 211 (275)
....++|.||+.|+..|-.-+.. ...||.+||.++++..
T Consensus 33 ~~~Rlti~i~~~lh~rlK~~Aa~-----------~g~Smsdvvreli~~~ 71 (76)
T 1p94_A 33 KIKRVNVNFDEEKHTRFKAACAR-----------KGTSITDVVNQLVDNW 71 (76)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHH-----------HTCCHHHHHHHHHHHH
T ss_pred CceeEEEEcCHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence 34568999999999988775542 2458999998887654
No 124
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=27.22 E-value=28 Score=31.97 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=31.1
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccee
Q 023917 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEW 97 (275)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~~~~~~~Y~VHY~GWn~r~DEW 97 (275)
.|++|+ |+||+...+.-|.-+.-...+...-|-+.|.||..|||.-
T Consensus 237 d~epGD-av~F~~~tlHga~plgn~~~~rRRAfS~RfvGDDaryd~~ 282 (344)
T 3nnf_A 237 EYNLGD-AFFFNKYVLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDEE 282 (344)
T ss_dssp CBCTTC-EEEEETTCEEEECCBCTTSCSCEEEEEEEEEETTCBBCHH
T ss_pred cCCCCc-EEEEecceeecCCCCCCCCccceeEEEEEEecCcceehHH
Confidence 368999 8888887776663111111122346999999999999964
No 125
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.89 E-value=97 Score=20.10 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhcCCcchhhHHHHHHHHHHHHhhh
Q 023917 202 DILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKA 236 (275)
Q Consensus 202 ~Il~~Y~~~~~~~~~~~~~~~~E~~~Gl~~yFn~~ 236 (275)
+||+++.+.+.. .-.|++++|+..|+..
T Consensus 15 EIL~E~RkElqK-------~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 15 ELLEEVKKELQK-------VKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 466666554433 3368999999999863
No 126
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=26.49 E-value=86 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCCcCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEE
Q 023917 49 SCPYQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHY 87 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~~~Y~VHY 87 (275)
...|.+||.|.+..|+ .-++|.|.+++..++...-.|..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~i 164 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEE
Confidence 3469999999999998 56899999998765444444444
No 127
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=26.27 E-value=1.1e+02 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.6
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEe
Q 023917 51 PYQVNEKVLAFFQSHVYEAKVIQVQY 76 (275)
Q Consensus 51 ~f~vge~vl~~~~~~~y~AkIl~i~~ 76 (275)
.|.+|+.|..+|..--|-++|.+.+.
T Consensus 7 ~~~~g~~v~~~yKTG~YigeI~e~~~ 32 (130)
T 1y71_A 7 TFEIGEIVTGIYKTGKYIGEVTNSRP 32 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEET
T ss_pred cCCccceeEEEEecceeEEEEEeecC
Confidence 48999999999988888888886554
No 128
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=25.84 E-value=2.5e+02 Score=22.47 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=9.6
Q ss_pred CcCCCCEEEEE
Q 023917 51 PYQVNEKVLAF 61 (275)
Q Consensus 51 ~f~vge~vl~~ 61 (275)
.|.||++|.+.
T Consensus 64 ~l~VG~RV~V~ 74 (141)
T 2cp5_A 64 DFRVGERVWVN 74 (141)
T ss_dssp CCCTTCEEEET
T ss_pred cCcCCCEEEEC
Confidence 59999999885
No 129
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=24.62 E-value=2.3e+02 Score=21.48 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=24.3
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEE
Q 023917 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHY 87 (275)
Q Consensus 53 ~vge~vl~~~-~~~~y~AkIl~i~~~~~~~~Y~VHY 87 (275)
++|++|++++ .|.....+|..+........|.|..
T Consensus 26 ~~gd~V~s~d~~g~~~~~~v~~~~~~~~~~~~~i~t 61 (139)
T 2in0_A 26 RKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRI 61 (139)
T ss_dssp TCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEE
T ss_pred cCCCEEEEECCCCCEEEEEEEEEEEcCCcEEEEEEe
Confidence 6799999996 4666667777776544445666654
No 130
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=24.11 E-value=91 Score=21.44 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=24.9
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHR 102 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~r 102 (275)
.+|+.....+|+..|+|.|.|... - +||+...
T Consensus 16 ekI~g~~~~~Gel~fLvKWKg~~~-~-d~Vpa~e 47 (65)
T 3kup_A 16 ERIIGATDSSGELMFLMKWKDSDE-A-DLVLAKE 47 (65)
T ss_dssp EEEEEEECTTSSCEEEEEETTCSC-C-EEEEHHH
T ss_pred eEEeeEEcCCCcEEEEEEECCCCh-h-heEEHHH
Confidence 468887777889999999999875 2 3888643
No 131
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=23.91 E-value=1.9e+02 Score=20.24 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=16.4
Q ss_pred CCCcCCCCEEEEEeC----CeeeeeE
Q 023917 49 SCPYQVNEKVLAFFQ----SHVYEAK 70 (275)
Q Consensus 49 ~~~f~vge~vl~~~~----~~~y~Ak 70 (275)
.+.|..||.|.++.. +.||.++
T Consensus 33 eLs~~~Gd~i~v~~~~~~~~~Ww~g~ 58 (91)
T 1wx6_A 33 ELNFEKGETMEVIEKPENDPEWWKCK 58 (91)
T ss_dssp BCCCCTTCEEEEEECCSSCTTEEEEE
T ss_pred cccCCCCCEEEEEECCCCCCCcEEEE
Confidence 456999999998875 3577664
No 132
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=23.80 E-value=1.4e+02 Score=24.21 Aligned_cols=38 Identities=11% Similarity=-0.107 Sum_probs=26.3
Q ss_pred CCCcCCCCEEEEEeCC---eeeeeEEEEEEee-CCeeEEEEE
Q 023917 49 SCPYQVNEKVLAFFQS---HVYEAKVIQVQYR-LKEWTFRVH 86 (275)
Q Consensus 49 ~~~f~vge~vl~~~~~---~~y~AkIl~i~~~-~~~~~Y~VH 86 (275)
+..|.+||-|++.-.+ ..|-|+|.++... +|.....|+
T Consensus 24 g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~ 65 (174)
T 1w4s_A 24 NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGC 65 (174)
T ss_dssp --CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEE
T ss_pred CEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEE
Confidence 4579999999997542 5899999999885 343333333
No 133
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=1.5e+02 Score=20.31 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=17.5
Q ss_pred CCCcCCCCEEEEEeC----CeeeeeEE
Q 023917 49 SCPYQVNEKVLAFFQ----SHVYEAKV 71 (275)
Q Consensus 49 ~~~f~vge~vl~~~~----~~~y~AkI 71 (275)
.+.|..||.|.+... +.|+.++.
T Consensus 33 eLsf~~Gd~i~v~~~~~~~~~Ww~g~~ 59 (80)
T 2d8h_A 33 DLNFQAGDRITVISKTDSHFDWWEGKL 59 (80)
T ss_dssp BCEECTTCEEEEEECCSCSSSEEEEEE
T ss_pred eeeEcCCCEEEEeECcCCCCCeEEEEE
Confidence 446999999998864 46887765
No 134
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=23.13 E-value=59 Score=22.47 Aligned_cols=32 Identities=3% Similarity=0.132 Sum_probs=24.9
Q ss_pred EEEEEe-eCCeeEEEEEEcCCCCCcceeeeccc
Q 023917 71 VIQVQY-RLKEWTFRVHYLGWNKSWDEWVGVHR 102 (275)
Q Consensus 71 Il~i~~-~~~~~~Y~VHY~GWn~r~DEWV~~~r 102 (275)
||+.+. .+|..+|+|-+.|+...-..|=+++.
T Consensus 17 Ii~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~ 49 (64)
T 2ee1_A 17 ILNHSVDKKGHVHYLIKWRDLPYDQASWESEDV 49 (64)
T ss_dssp CCEEEECTTCCEEEEECCTTSCTTTCEEEETTC
T ss_pred EEEEEecCCCCEEEEEEEcCCCcccCcccCCcc
Confidence 444444 35678999999999998889999873
No 135
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.30 E-value=2e+02 Score=20.02 Aligned_cols=23 Identities=4% Similarity=0.208 Sum_probs=17.6
Q ss_pred CCCcCCCCEEEEEeC--CeeeeeEE
Q 023917 49 SCPYQVNEKVLAFFQ--SHVYEAKV 71 (275)
Q Consensus 49 ~~~f~vge~vl~~~~--~~~y~AkI 71 (275)
.+.|..||.|.++.. +.||.++.
T Consensus 33 eLsf~~Gd~i~v~~~~~~~Ww~g~~ 57 (88)
T 1x2q_A 33 ELTFKHGEIIIVLDDSDANWWKGEN 57 (88)
T ss_dssp CCCCCSSCEEEEEECSCSSSEEEEE
T ss_pred ccCCCCCCEEEEEEeCCCCEEEEEE
Confidence 456999999998874 46887754
No 136
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=21.94 E-value=1.3e+02 Score=23.62 Aligned_cols=29 Identities=14% Similarity=0.081 Sum_probs=24.3
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeCC
Q 023917 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRLK 79 (275)
Q Consensus 51 ~f~vge~vl~~~~--~~~y~AkIl~i~~~~~ 79 (275)
.+++|+.|++..+ +.+..++|.+|.....
T Consensus 91 ~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~ 121 (145)
T 1at0_A 91 RIEEKNQVLVRDVETGELRPQRVVKVGSVRS 121 (145)
T ss_dssp GCCTTCEEEEECTTTCCEEEEEEEEEEEEEE
T ss_pred HCcCCCEEEEecCCCCCEEEEEEEEEEEEEE
Confidence 4889999999987 6799999999976543
No 137
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.44 E-value=1.6e+02 Score=20.07 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=17.0
Q ss_pred CCCcCCCCEEEEEeC---CeeeeeEE
Q 023917 49 SCPYQVNEKVLAFFQ---SHVYEAKV 71 (275)
Q Consensus 49 ~~~f~vge~vl~~~~---~~~y~AkI 71 (275)
.+.|..||.|.+... +.|+.++.
T Consensus 29 eLs~~~Gd~i~v~~~~~~~~Ww~g~~ 54 (78)
T 2dl5_A 29 ELTIEEHEVLEVIEDGDMEDWVKARN 54 (78)
T ss_dssp BCCBCSSEEEEEEECCSSSSEEEEEC
T ss_pred CCCCCCCCEEEEEeccCCCCcEEEEe
Confidence 446999999988764 46877754
No 138
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=21.08 E-value=1.1e+02 Score=21.28 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=17.8
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEeeCCe-eEEEEEEcCCCCCcceeeeccccc
Q 023917 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYRLKE-WTFRVHYLGWNKSWDEWVGVHRLM 104 (275)
Q Consensus 51 ~f~vge~vl~~~~~-~~y~AkIl~i~~~~~~-~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (275)
.|++||.|+--.-| -.|.+ |..+...... ..|.++|.+ +. --.||.+++.
T Consensus 2 ~l~~GD~VVh~~hGiG~~~g-i~~~~v~g~~~ey~~l~y~~-~~--~l~VPv~~~~ 53 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLG-LETREVLGVKRDYLVLRYKG-EG--KLYLPVEQLP 53 (71)
T ss_dssp --------------CEEEEE-EEEEEETTEEEEEEEEEETT-TE--EEEEESSSCC
T ss_pred cCCCCCEEEECCCeeEEEeE-EEEEEeCCeeEEEEEEEECC-CC--EEEEEhhhhc
Confidence 48999999876655 33433 3333332222 356688985 21 3567876553
No 139
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=20.74 E-value=1.1e+02 Score=21.81 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=22.5
Q ss_pred eEEEEEEeeCCeeEEEEEEcCCCCCcceeeeccc
Q 023917 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHR 102 (275)
Q Consensus 69 AkIl~i~~~~~~~~Y~VHY~GWn~r~DEWV~~~r 102 (275)
.+|+.....+|+..|+|.|.|... =+||+...
T Consensus 26 EkIlg~t~~~Gel~fLVKWKg~~e--~dlVpa~e 57 (75)
T 3i3c_A 26 EKIIGATDSCGDLMFLMKWKDTDE--ADLVLAKE 57 (75)
T ss_dssp EEEEEEEC---CCEEEEEETTSSC--EEEEEHHH
T ss_pred eEEeeEEccCCcEEEEEEECCCCh--hceEEHHH
Confidence 468888777888999999999876 23888643
No 140
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.01 E-value=2.3e+02 Score=20.26 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=17.4
Q ss_pred CCCcCCCCEEEEEe--C-CeeeeeEE
Q 023917 49 SCPYQVNEKVLAFF--Q-SHVYEAKV 71 (275)
Q Consensus 49 ~~~f~vge~vl~~~--~-~~~y~AkI 71 (275)
.+.|..||.|.++. . +-||.+++
T Consensus 41 eLsf~~Gd~i~vl~~~~~~gWw~g~~ 66 (97)
T 2csq_A 41 ELPFKEGQIIKVYGDKDADGFYRGET 66 (97)
T ss_dssp BCCBCTTCEEEEEEEECTTCEEEEEE
T ss_pred ccCCCCCCEEEEEEecCCCCeEEEEE
Confidence 45699999999984 2 34988875
Done!