Query 023919
Match_columns 275
No_of_seqs 208 out of 1465
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3145 Cystine transporter Cy 100.0 2.4E-52 5.3E-57 365.4 7.4 252 1-253 112-365 (372)
2 TIGR00951 2A43 Lysosomal Cysti 100.0 1.4E-40 3E-45 290.0 22.4 218 11-244 2-220 (220)
3 KOG2913 Predicted membrane pro 100.0 2.3E-29 5E-34 223.0 14.2 210 7-248 3-250 (260)
4 KOG3211 Predicted endoplasmic 99.8 4.5E-19 9.8E-24 149.1 15.4 206 4-248 22-227 (230)
5 PF04193 PQ-loop: PQ loop repe 99.4 3.9E-13 8.6E-18 93.9 6.7 53 12-64 1-53 (61)
6 PF04193 PQ-loop: PQ loop repe 99.3 4.6E-12 1E-16 88.5 3.9 56 152-207 2-57 (61)
7 TIGR00951 2A43 Lysosomal Cysti 99.2 2.5E-11 5.5E-16 106.1 7.1 94 152-246 4-102 (220)
8 KOG3145 Cystine transporter Cy 99.1 1.4E-11 3E-16 109.4 0.1 98 150-248 122-228 (372)
9 KOG2913 Predicted membrane pro 99.1 4.6E-10 9.9E-15 100.0 8.4 91 147-248 4-94 (260)
10 smart00679 CTNS Repeated motif 99.0 2.7E-10 5.8E-15 69.2 2.4 32 26-57 1-32 (32)
11 smart00679 CTNS Repeated motif 98.8 1.1E-09 2.5E-14 66.4 0.2 32 165-196 1-32 (32)
12 KOG1623 Multitransmembrane pro 98.7 2.3E-07 5E-12 81.6 12.5 168 9-199 5-175 (243)
13 PHA02246 hypothetical protein 98.4 6.2E-06 1.3E-10 67.1 12.4 162 10-206 2-163 (192)
14 COG4095 Uncharacterized conser 98.1 4.8E-06 1E-10 61.4 4.9 84 151-246 4-87 (89)
15 COG4095 Uncharacterized conser 98.0 9.3E-05 2E-09 54.6 9.4 53 12-64 4-56 (89)
16 PF03083 MtN3_slv: Sugar efflu 97.9 9.8E-06 2.1E-10 60.4 2.7 82 154-247 5-86 (87)
17 PF03083 MtN3_slv: Sugar efflu 97.6 0.00018 3.9E-09 53.5 6.6 82 15-117 5-86 (87)
18 PF00810 ER_lumen_recept: ER l 96.1 0.082 1.8E-06 43.4 10.4 52 148-199 89-140 (147)
19 KOG3211 Predicted endoplasmic 95.6 0.023 5.1E-07 48.7 5.3 51 151-201 30-80 (230)
20 KOG1623 Multitransmembrane pro 95.2 0.034 7.5E-07 49.2 5.0 85 152-248 9-94 (243)
21 KOG3106 ER lumen protein retai 94.2 0.31 6.8E-06 41.5 8.2 41 151-191 115-155 (212)
22 PHA02246 hypothetical protein 94.2 0.47 1E-05 39.0 8.9 34 25-58 121-154 (192)
23 KOG2489 Transmembrane protein 92.5 0.91 2E-05 44.0 9.3 62 129-190 445-507 (592)
24 PF00810 ER_lumen_recept: ER l 76.6 10 0.00022 31.1 6.5 52 10-61 90-141 (147)
25 COG5196 ERD2 ER lumen protein 75.7 29 0.00064 29.2 8.9 43 151-193 116-158 (214)
26 PF08611 DUF1774: Fungal prote 74.2 9.1 0.0002 29.1 5.1 11 255-265 87-97 (97)
27 PF06679 DUF1180: Protein of u 60.2 13 0.00028 31.0 3.9 8 256-263 137-144 (163)
28 KOG2489 Transmembrane protein 56.9 27 0.00058 34.3 5.8 45 9-54 466-510 (592)
29 PHA02706 hypothetical protein; 55.5 5.7 0.00012 26.2 0.8 42 220-267 13-54 (58)
30 KOG2533 Permease of the major 51.4 2.2E+02 0.0048 28.0 11.4 28 179-206 399-426 (495)
31 PHA00726 hypothetical protein 36.7 50 0.0011 24.4 3.3 28 225-253 9-36 (89)
32 TIGR01478 STEVOR variant surfa 34.9 45 0.00098 30.4 3.4 12 241-252 281-292 (295)
33 PF07458 SPAN-X: Sperm protein 32.8 18 0.0004 27.2 0.5 21 242-262 55-75 (97)
34 COG4736 CcoQ Cbb3-type cytochr 31.0 59 0.0013 22.5 2.8 25 226-250 13-37 (60)
35 PTZ00370 STEVOR; Provisional 28.7 52 0.0011 30.0 2.8 13 240-252 276-288 (296)
36 KOG0828 Predicted E3 ubiquitin 25.9 1.2E+02 0.0026 29.9 4.8 36 154-189 452-488 (636)
37 PF04689 S1FA: DNA binding pro 23.8 27 0.00059 24.4 0.1 22 37-58 3-24 (69)
38 PF14800 DUF4481: Domain of un 22.4 65 0.0014 29.5 2.2 18 254-271 215-232 (308)
39 PRK14780 lipoprotein signal pe 21.3 1.8E+02 0.0039 26.2 4.7 31 218-248 201-231 (263)
40 PRK15049 L-asparagine permease 20.4 6.9E+02 0.015 24.3 9.2 8 148-155 378-385 (499)
41 PF11368 DUF3169: Protein of u 20.1 1.2E+02 0.0025 26.8 3.4 18 183-200 11-28 (248)
No 1
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-52 Score=365.43 Aligned_cols=252 Identities=55% Similarity=0.916 Sum_probs=231.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 023919 1 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKY 80 (275)
Q Consensus 1 ~~~~~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~ 80 (275)
|..+.+.++.++..++||++.+.|++|++||++.||||||++|||+||+.+|+.|...|+++|.+++|.+.+++||..++
T Consensus 112 ~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~ 191 (372)
T KOG3145|consen 112 MTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSY 191 (372)
T ss_pred EEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999998788
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhcccCCccchh-HHHHHHHHHHHHHHHHHHhhcCCc-chHHHHHHHHHH
Q 023919 81 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSK-ISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAI 158 (275)
Q Consensus 81 ~~~~~~pv~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~ 158 (275)
|.| .+|+..+|+.+++|+++++.+++.||+.|+|..|+.|+ +..+++.+++++..+++..+.+.. .|+++...+.++
T Consensus 192 p~g-~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syi 270 (372)
T KOG3145|consen 192 PLG-VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYI 270 (372)
T ss_pred CCC-CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 865 58899999999999999999999999999999999887 567777777777777777665443 488899999999
Q ss_pred HHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHHHHHhh
Q 023919 159 QVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQ 238 (275)
Q Consensus 159 ~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q 238 (275)
+..+++++|+||.++||+||||+|+|+..+++|+.|++++.+|++++..+.+||+.+.+||.++.++++++++|.+++.|
T Consensus 271 Kl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~Q 350 (372)
T KOG3145|consen 271 KLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQ 350 (372)
T ss_pred HHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCccccccc
Q 023919 239 HYVLYPAKKAVISSK 253 (275)
Q Consensus 239 ~~~~Y~~~~~~~~~~ 253 (275)
||++|++++..+.++
T Consensus 351 hyVly~~~~~~~s~y 365 (372)
T KOG3145|consen 351 HYVLYPRGHVLKSEY 365 (372)
T ss_pred heeEeccccccCCCC
Confidence 998888887755444
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=100.00 E-value=1.4e-40 Score=290.02 Aligned_cols=218 Identities=39% Similarity=0.608 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCccc
Q 023919 11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAA 90 (275)
Q Consensus 11 ~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 90 (275)
.+|+++||+++++|+++++||++||+||||++|+|++|+.++++|++++.+||.+.++++..+++|..++ ++++.
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~-----~~v~~ 76 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSS-----PGVTQ 76 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccc-----CCCcH
Confidence 4799999999999999999999999999999999999999999999999999999989888877666543 23677
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHHHhcccc
Q 023919 91 NDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIP 169 (275)
Q Consensus 91 ~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~P 169 (275)
+|+++++|.++++++++.|+..|+++.|+.+..+.+.+...+.++..+.... .....|.+..+.+++++.++..++|+|
T Consensus 77 edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiP 156 (220)
T TIGR00951 77 NDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFP 156 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999998888888877654433333332222111 123467889999999999999999999
Q ss_pred eeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 023919 170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 244 (275)
Q Consensus 170 Qi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q~~~~Y~ 244 (275)
|++.|||||||+|+|+.++++|++|.+.++++.. ++ .+|+.++..+..++++|.+++.||+ +|+
T Consensus 157 Qi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~----~~------~gd~~~l~~~~~s~~~n~i~~~Q~~-~y~ 220 (220)
T TIGR00951 157 QAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSV----NE------TGDPLKAGLFVVSSLFNGLFAAQVF-FYW 220 (220)
T ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHH----HH------cCCHHHHHHHHHHHHHHHHHHHHHh-hcC
Confidence 9999999999999999999999999777766543 21 2789999999999999999999997 775
No 3
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.96 E-value=2.3e-29 Score=222.96 Aligned_cols=210 Identities=25% Similarity=0.254 Sum_probs=160.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCC
Q 023919 7 VPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMI 86 (275)
Q Consensus 7 ~~~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~ 86 (275)
..++.+|.++|.++++||+++.+|||++|||+||++|+|+.|+..|++|++++.+++... +..
T Consensus 3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~-----------------~~~ 65 (260)
T KOG2913|consen 3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ-----------------PLG 65 (260)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc-----------------ccc
Confidence 457899999999999999999999999999999999999999999999999998876421 112
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhcccCCc---------cchhHHH--HHHH-------------HHHHHH------H
Q 023919 87 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQ---------KVSKISM--AIVS-------------VVWLAA------A 136 (275)
Q Consensus 87 pv~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~---------~~s~~~~--~~~~-------------~~~~~~------~ 136 (275)
|. ..+.+.+..+.|.+++.|+++|+.... .++..+- +... -....+ .
T Consensus 66 ~~---~~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (260)
T KOG2913|consen 66 ST---LKVQAVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFL 142 (260)
T ss_pred hh---HHHHHHHHHHHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHH
Confidence 22 234466778999999999999986433 1111110 0000 000000 0
Q ss_pred HHHH--hhcC-----C-cchHHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccc
Q 023919 137 VCFF--VALP-----N-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID 208 (275)
Q Consensus 137 ~~~~--~~~~-----~-~~~~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~ 208 (275)
.+.. ...+ . ...+..+.++|+++++++...|+|||++||+||||+|+|..++.++..||.++..|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s------- 215 (260)
T KOG2913|consen 143 ICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS------- 215 (260)
T ss_pred HHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc-------
Confidence 1100 0000 1 12345788999999999999999999999999999999999999999999999876
Q ss_pred ccccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 023919 209 QNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 248 (275)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~ 248 (275)
++...|.||+.++..++.+|+.++.|++ .||+++.
T Consensus 216 ----~~~~~n~~w~~~~~~~~~~D~~~~~q~~-~~~~~~~ 250 (260)
T KOG2913|consen 216 ----SYLVTNLPWLVDSKGTIYLDIFIFLQFF-NYRASKA 250 (260)
T ss_pred ----cccccCCcccccCCcchhHHHHHHHHHH-Hhhcccc
Confidence 3456789999999999999999999986 7887773
No 4
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=99.82 E-value=4.5e-19 Score=149.05 Aligned_cols=206 Identities=19% Similarity=0.227 Sum_probs=148.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCC
Q 023919 4 WNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRD 83 (275)
Q Consensus 4 ~~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~ 83 (275)
|+-.+...+|+.+||..+......++|||.|+..+||++|+|...+.++++|+...+.|+. ...||
T Consensus 22 ~~~cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~------------~~g~p-- 87 (230)
T KOG3211|consen 22 HKDCLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY------------TSGYP-- 87 (230)
T ss_pred CccchHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh------------hcCCC--
Confidence 5677889999999999999999999999999999999999999999999999998777663 11232
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Q 023919 84 QMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMT 163 (275)
Q Consensus 84 ~~~pv~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (275)
+..+.+..+ .++++.+++.++++|+.+.-...... + .. +.+...... ...-.|+.+........+.
T Consensus 88 ---Fss~gE~~f---Ll~Q~vili~~if~f~~~~~~~v~~l-~--~~----~~v~~~~~s-k~~p~~~~~L~~~~~l~i~ 153 (230)
T KOG3211|consen 88 ---FSSYGEYPF---LLLQAVILILCIFHFSGQTVTVVQFL-G--YI----ALVVSVLAS-KALPLWIITLAQNLCLPIV 153 (230)
T ss_pred ---chhHHHHHH---HHHHHHHHHHHHHHhccceeehhhHH-H--HH----HHHHHHHHH-hhhhHHHHHHHHhcCchhh
Confidence 222222222 46788899999999983321111000 0 00 110000110 1112345555555667788
Q ss_pred HhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhc
Q 023919 164 LIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY 243 (275)
Q Consensus 164 ~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q~~~~Y 243 (275)
.++|+||+..|||+|+|+.+|..+.++++.|..+++++.+-+ .+++..+.....+.++|+++..|. +.|
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~----------t~d~~mll~~v~s~~~Ng~i~aq~-l~Y 222 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE----------TGDFLMLLRFVISLALNGLITAQV-LRY 222 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh----------cCChhhHHHHHHHHHHhHHHHHHH-HHH
Confidence 899999999999999999999999999999999998754421 234445556677899999999998 589
Q ss_pred cCCcc
Q 023919 244 PAKKA 248 (275)
Q Consensus 244 ~~~~~ 248 (275)
|++++
T Consensus 223 ~s~~~ 227 (230)
T KOG3211|consen 223 WSTAI 227 (230)
T ss_pred HhcCC
Confidence 98776
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=99.43 E-value=3.9e-13 Score=93.93 Aligned_cols=53 Identities=42% Similarity=0.742 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHH
Q 023919 12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64 (275)
Q Consensus 12 is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~ 64 (275)
++.++|+++.++++++++||++||||+||++|+|+.++.++++|++++.+|..
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~ 53 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI 53 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999888765
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=99.26 E-value=4.6e-12 Score=88.49 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcc
Q 023919 152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI 207 (275)
Q Consensus 152 ~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~ 207 (275)
.+.+|+++.++++++++||+++|||+||++|+|+.++.+++.|+++++++.+....
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~ 57 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY 57 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999988776543
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.21 E-value=2.5e-11 Score=106.09 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccc---ccccchh--hhcHHHHHHHH
Q 023919 152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID---QNSWVNF--YGNIGKTLLSL 226 (275)
Q Consensus 152 ~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~---~~~~~~~--~~~~~~l~~~~ 226 (275)
-..+|+...+++.++++||+++||||||++|+|+.++.++++|..++.+..+..... +++.+.. ....-++..++
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai 83 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTL 83 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999876543221 1111111 01224778899
Q ss_pred HHHHHHHHHHhhhhhhccCC
Q 023919 227 VSVVFDLLFICQHYVLYPAK 246 (275)
Q Consensus 227 ~~i~~d~ii~~Q~~~~Y~~~ 246 (275)
++++++++++.|.. .|.++
T Consensus 84 ~~~il~~l~~~q~~-~~~~~ 102 (220)
T TIGR00951 84 HAILICFIVLHQCG-DYERG 102 (220)
T ss_pred HHHHHHHHHHHHHh-hcccc
Confidence 99999999999974 66544
No 8
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.10 E-value=1.4e-11 Score=109.35 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccc---cccc--ch-hhhcHH---
Q 023919 150 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID---QNSW--VN-FYGNIG--- 220 (275)
Q Consensus 150 ~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~---~~~~--~~-~~~~~~--- 220 (275)
...+++||+..+.|.+++.||++.||||||+.|++++++.++++|...+.+..+..... ++|. .+ .-.+|+
T Consensus 122 il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~n 201 (372)
T KOG3145|consen 122 ILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLN 201 (372)
T ss_pred HHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchh
Confidence 45678999999999999999999999999999999999999999999999876654332 2222 11 111222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 023919 221 KTLLSLVSVVFDLLFICQHYVLYPAKKA 248 (275)
Q Consensus 221 ~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~ 248 (275)
.++.++++++++++.+.|++ .|.|..+
T Consensus 202 Dv~fslHa~lmt~Iti~Qc~-~yeR~~q 228 (372)
T KOG3145|consen 202 DVVFSLHAVLMTVITILQCF-FYERGWQ 228 (372)
T ss_pred hhhhhHHHHHHHHHHHHHHH-hhhhccc
Confidence 34779999999999999984 8876544
No 9
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.07 E-value=4.6e-10 Score=100.02 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHH
Q 023919 147 SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226 (275)
Q Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (275)
.+.....++|.++.++|++..+|||+.|||+||++|+|+.+++.|+.|+++.+++..+... ++...+.+.
T Consensus 4 ~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~----------~~~~~~~~~ 73 (260)
T KOG2913|consen 4 INDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL----------GSTLKVQAV 73 (260)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc----------chhHHHHHH
Confidence 4556778899999999999999999999999999999999999999999999988776442 233333445
Q ss_pred HHHHHHHHHHhhhhhhccCCcc
Q 023919 227 VSVVFDLLFICQHYVLYPAKKA 248 (275)
Q Consensus 227 ~~i~~d~ii~~Q~~~~Y~~~~~ 248 (275)
.-.+.|.+++.|.+ +|++..+
T Consensus 74 yy~~~d~~l~~q~~-yy~~~~~ 94 (260)
T KOG2913|consen 74 YYTLADSVLFVQCL-YYGNIYP 94 (260)
T ss_pred HHHHHHHHHHHHHH-hcchhcc
Confidence 55677899999974 7775544
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.98 E-value=2.7e-10 Score=69.18 Aligned_cols=32 Identities=53% Similarity=0.710 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHhCCccccChHHHHHHHHHHH
Q 023919 26 VSFYPQVILNFRRKSVVGLNFDFVLLNLTKHS 57 (275)
Q Consensus 26 ~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~ 57 (275)
++++||+++|+|+||++|+|+.|+++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 46899999999999999999999999999863
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.78 E-value=1.1e-09 Score=66.40 Aligned_cols=32 Identities=50% Similarity=0.748 Sum_probs=29.7
Q ss_pred hcccceeeeecccccccccchHHHHHHHHhHH
Q 023919 165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC 196 (275)
Q Consensus 165 ~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~ 196 (275)
++++||+++|||+||++|+|+.++++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 47899999999999999999999999999863
No 12
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=98.71 E-value=2.3e-07 Score=81.60 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCc
Q 023919 9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPV 88 (275)
Q Consensus 9 ~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv 88 (275)
...+-.+.|-++..+-+.+-+|-.++++||||+||.|..=++..++++.+++-|.... .+ +..-+
T Consensus 5 ~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~------------~~---d~lli 69 (243)
T KOG1623|consen 5 LLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLK------------VH---DYLLI 69 (243)
T ss_pred HHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhc------------cC---ceEEE
Confidence 3444455666666777789999999999999999999999999999988875544200 00 10111
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH---HHHHh
Q 023919 89 AANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQV---IMTLI 165 (275)
Q Consensus 89 ~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 165 (275)
..+ . ..+.+..+-+.-+++|.++++..+......+..+. ..+.+..... ++-....+.+|++++ ++...
T Consensus 70 tIN-~----~G~~ie~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~--~~i~~~~~~~-~~~~~~~~~lG~vc~~~nI~~~~ 141 (243)
T KOG1623|consen 70 TIN-G----IGLVIETVYISIFLYYAPKKKTVKIVLALVLGVIG--LIILLTLLLF-HDPERRVSVLGIVCAVFNISMFA 141 (243)
T ss_pred EEe-h----hcHHHHHHHHHHHheecCchheeEeeehHHHHHHH--HHHHHHHHhc-CCcceeeeeeehhhhhhhHHhhh
Confidence 111 1 12555666677778887665433222111111111 1111111111 111111223344433 34445
Q ss_pred cccceeeeecccccccccchHHHHHHHHhHHHHH
Q 023919 166 KYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY 199 (275)
Q Consensus 166 ~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~ 199 (275)
+.+--+.+--|+||||.++...-+..++-+.-|.
T Consensus 142 sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~ 175 (243)
T KOG1623|consen 142 APLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWL 175 (243)
T ss_pred ccHHhhhhheecCceeeechHHHHHHHHHHHHHH
Confidence 6666666888899999999998666666555553
No 13
>PHA02246 hypothetical protein
Probab=98.43 E-value=6.2e-06 Score=67.05 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCcc
Q 023919 10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVA 89 (275)
Q Consensus 10 ~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv~ 89 (275)
+.++..+...+...-.+.++||+....|.|+++|.|-.|..+-...-- .+.||... .+....|
T Consensus 2 d~~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvg-iSfyNlL~----------------T~~~~fq 64 (192)
T PHA02246 2 DNLSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVG-ISFYNLLL----------------TDASVFQ 64 (192)
T ss_pred chHHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHH-HHHHHHHh----------------cCCceEE
Confidence 346677778888888899999999999999999999888766433321 12344311 1111122
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhcccc
Q 023919 90 ANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIP 169 (275)
Q Consensus 90 ~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P 169 (275)
. .+++.-+.-.+.......||++..-..+... + .++..+.+. +.......++...-..+|+|
T Consensus 65 i----~svg~nl~lgivcLlv~~~rkkd~f~~~fii-i------fSLllfll~-------~~~evtQtVat~tIiLaYi~ 126 (192)
T PHA02246 65 I----VSVGLNLTLGIVCLLVASYRKKDYFSIPFII-V------FSLLLFLLS-------DFTALTQTVATITIILAYVT 126 (192)
T ss_pred E----eeeehhhhhhhhheeeehhhccccccchHHH-H------HHHHHHHHh-------hhHHHHHHHHHHHHHHHHHH
Confidence 1 1211111111122222357765433222221 1 122111111 12334445777778889999
Q ss_pred eeeeecccccccccchHHHHHHHHhHHHHHHHHHhhc
Q 023919 170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 206 (275)
Q Consensus 170 Qi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~ 206 (275)
||+.=||.|+.||.+..+.++--.|-.+-..+.++..
T Consensus 127 QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lth 163 (192)
T PHA02246 127 QITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTH 163 (192)
T ss_pred HHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhC
Confidence 9999999999999999988888887776666655443
No 14
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=4.8e-06 Score=61.39 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHH
Q 023919 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV 230 (275)
Q Consensus 151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~ 230 (275)
.....|+++..+....++||..+.+|.|+|+++|+.++.....|-..+++ ++....|.+....|. ++..
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwli----ygILi~~lPii~aN~-------i~~i 72 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLI----YGILINDLPIIIANI-------ISFI 72 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH----HHHHHccCcchhHHH-------HHHH
Confidence 35678999999999999999999999999999999999999999999965 333323444444554 4455
Q ss_pred HHHHHHhhhhhhccCC
Q 023919 231 FDLLFICQHYVLYPAK 246 (275)
Q Consensus 231 ~d~ii~~Q~~~~Y~~~ 246 (275)
++++++.=. +.|+.|
T Consensus 73 l~liIl~~k-I~~~~k 87 (89)
T COG4095 73 LSLIILFYK-IKYILK 87 (89)
T ss_pred HHHHHHHHH-HHHHHh
Confidence 555555543 245433
No 15
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=9.3e-05 Score=54.64 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHH
Q 023919 12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64 (275)
Q Consensus 12 is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~ 64 (275)
.-.+.|++....-.++++||.+|.+|.|++.++|+.++..-.+|..++++|.+
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI 56 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI 56 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999876
No 16
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=97.86 E-value=9.8e-06 Score=60.38 Aligned_cols=82 Identities=23% Similarity=0.395 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHH
Q 023919 154 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDL 233 (275)
Q Consensus 154 ~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ 233 (275)
+++.+..++...+.+||+.+.+|+||++++|+..+...++++.+|+. ++...+|+..+..|.+ .+++.+
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~----YG~l~~d~~i~~~N~~-------g~~~~~ 73 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLI----YGILINDWPIIVPNVF-------GLVLSI 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhh----hhhhcCCeeEEeeHHH-------HHHHHH
Confidence 35556677788889999999999999999999999999999999954 5555567766666654 333444
Q ss_pred HHHhhhhhhccCCc
Q 023919 234 LFICQHYVLYPAKK 247 (275)
Q Consensus 234 ii~~Q~~~~Y~~~~ 247 (275)
+.+.-++ .|+++|
T Consensus 74 ~~~~~~~-~y~~~~ 86 (87)
T PF03083_consen 74 IYLVVYY-IYPSKK 86 (87)
T ss_pred HHHhheE-EeCCCC
Confidence 5555543 566554
No 17
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=97.64 E-value=0.00018 Score=53.50 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCccchhHH
Q 023919 15 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVA 94 (275)
Q Consensus 15 ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~v~ 94 (275)
++|.+..++-..+.+||+++..|+||++++|+..++..++++..+..|.... + +.++-...++
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~----------------~-d~~i~~~N~~ 67 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI----------------N-DWPIIVPNVF 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc----------------C-CeeEEeeHHH
Confidence 4556666677778899999999999999999999999999999998887521 1 1233333333
Q ss_pred HHHHHHHHHHHHHHHhhhcccCC
Q 023919 95 FSMHAVLLTIITLFQIAIYERGV 117 (275)
Q Consensus 95 ~s~~~~~~~~i~l~Q~~~Y~~~~ 117 (275)
.+++....+.-++.|.+++
T Consensus 68 ----g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 68 ----GLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred ----HHHHHHHHHhheEEeCCCC
Confidence 3566667777777776653
No 18
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=96.12 E-value=0.082 Score=43.40 Aligned_cols=52 Identities=8% Similarity=0.136 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHH
Q 023919 148 WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY 199 (275)
Q Consensus 148 ~~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~ 199 (275)
..++.++++..+..+++++-+||..+-.|++.+|.+...+++.-.+.=++++
T Consensus 89 ~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~ 140 (147)
T PF00810_consen 89 SFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYL 140 (147)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999998887766655444443
No 19
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.64 E-value=0.023 Score=48.72 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHH
Q 023919 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ 201 (275)
Q Consensus 151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s 201 (275)
+...+|+.-..-...-++|||.+.-..||++|+|...+.+.+.|....+..
T Consensus 30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y 80 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSY 80 (230)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeee
Confidence 445677777788888999999999999999999999999999998877543
No 20
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=95.16 E-value=0.034 Score=49.21 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccccc-ccchhhhcHHHHHHHHHHHH
Q 023919 152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN-SWVNFYGNIGKTLLSLVSVV 230 (275)
Q Consensus 152 ~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~-~~~~~~~~~~~l~~~~~~i~ 230 (275)
..+.+.+.....+.+.+|-.++.+|||||||.|..-+++.++++.+|+- ++.... |...+.-|.. .++
T Consensus 9 ~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~----YG~~~~~d~llitIN~~-------G~~ 77 (243)
T KOG1623|consen 9 FGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLY----YGLLKVHDYLLITINGI-------GLV 77 (243)
T ss_pred HHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHH----hhhhccCceEEEEEehh-------cHH
Confidence 3344445556666888999999999999999999999999999999953 442222 5555555543 233
Q ss_pred HHHHHHhhhhhhccCCcc
Q 023919 231 FDLLFICQHYVLYPAKKA 248 (275)
Q Consensus 231 ~d~ii~~Q~~~~Y~~~~~ 248 (275)
+..+.+.=+ ++|.++|+
T Consensus 78 ie~~Yi~~f-~~ya~~k~ 94 (243)
T KOG1623|consen 78 IETVYISIF-LYYAPKKK 94 (243)
T ss_pred HHHHHHHHH-heecCchh
Confidence 334444444 36776665
No 21
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.31 Score=41.49 Aligned_cols=41 Identities=7% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHH
Q 023919 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD 191 (275)
Q Consensus 151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~ 191 (275)
+.++++..+.-+++++-+||..+--|.|.+|-+-...++.-
T Consensus 115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaL 155 (212)
T KOG3106|consen 115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFAL 155 (212)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHH
Confidence 67788889999999999999999999999998877655443
No 22
>PHA02246 hypothetical protein
Probab=94.17 E-value=0.47 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=29.9
Q ss_pred HhhhhHHHHHHHHhCCccccChHHHHHHHHHHHH
Q 023919 25 SVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSS 58 (275)
Q Consensus 25 ~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~ 58 (275)
...++|||+.=||.|+.||.++.+.++-.+|-.+
T Consensus 121 iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~ 154 (192)
T PHA02246 121 ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS 154 (192)
T ss_pred HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH
Confidence 4689999999999999999999999988777544
No 23
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=92.48 E-value=0.91 Score=44.03 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcCCcch-HHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHH
Q 023919 129 SVVWLAAAVCFFVALPNHSW-LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL 190 (275)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l 190 (275)
+-.++++++..++..+..+| -|+++.+--.-..+-++--+||...|||.||+.-+...++.-
T Consensus 445 ~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 445 FPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred HHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 34455667776666666665 355554333333445566789999999999999999887644
No 24
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=76.57 E-value=10 Score=31.06 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHH
Q 023919 10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMI 61 (275)
Q Consensus 10 ~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~i 61 (275)
..+..++=..++...+++.+||+..-.|++.+|.+.-.+++.-....++|.+
T Consensus 90 ~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~ 141 (147)
T PF00810_consen 90 FFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL 141 (147)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence 3556666677888899999999999999999999999999888888887654
No 25
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=75.66 E-value=29 Score=29.20 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHH
Q 023919 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFL 193 (275)
Q Consensus 151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~ 193 (275)
+.++++..+.-++.+.-+||..+--+...|+.+-...++.-.+
T Consensus 116 isnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL 158 (214)
T COG5196 116 ISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL 158 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence 5677888899999999999999999999999988776655444
No 26
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=74.25 E-value=9.1 Score=29.09 Aligned_cols=11 Identities=45% Similarity=0.595 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q 023919 255 SKDGGVEPLLK 265 (275)
Q Consensus 255 ~~~~~~~~ll~ 265 (275)
+.|.||+|||+
T Consensus 87 ~~d~EraPLLn 97 (97)
T PF08611_consen 87 STDRERAPLLN 97 (97)
T ss_pred CCccccccccC
Confidence 36889999985
No 27
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=60.25 E-value=13 Score=31.03 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 023919 256 KDGGVEPL 263 (275)
Q Consensus 256 ~~~~~~~l 263 (275)
++-|..||
T Consensus 137 ~~~Em~pL 144 (163)
T PF06679_consen 137 ENVEMAPL 144 (163)
T ss_pred ccceeccc
Confidence 35599999
No 28
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=56.90 E-value=27 Score=34.29 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHH
Q 023919 9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLT 54 (275)
Q Consensus 9 ~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~ 54 (275)
-.+++..-|.++.++. +...||+.-|||.||+..|.--++..-++
T Consensus 466 SWvLn~l~~~vy~FGF-i~M~PQLFINYKLKSVAHLPWR~~tYKa~ 510 (592)
T KOG2489|consen 466 SWVLNSLYNGVYAFGF-IFMLPQLFINYKLKSVAHLPWRAFTYKAF 510 (592)
T ss_pred HHHHHHHHhHHHHHHH-HHhChHHHhhhhhhhhhcCcHHHHHHHHH
Confidence 3456677777777665 45789999999999999999887765433
No 29
>PHA02706 hypothetical protein; Provisional
Probab=55.50 E-value=5.7 Score=26.16 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCcccccccCCCCCCCCCCCCCC
Q 023919 220 GKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 267 (275)
Q Consensus 220 ~~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~~~~~~~~~~~~~~~ll~~~ 267 (275)
....+++.+++.|.++++-.| +-+++.... .++|-+|||...
T Consensus 13 immllgi~siiidtvifinay--fvkkr~~~~----k~~e~~pll~kt 54 (58)
T PHA02706 13 IMMLLGIASIIIDTVIFINAY--FVKKRKCIN----KKDEIEPLLDKT 54 (58)
T ss_pred HHHHHhhHHHhhheeeeeehh--hhhhhhhcc----cccccchhhhhh
Confidence 344567788999999999875 333322222 256889999753
No 30
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=51.37 E-value=2.2e+02 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=14.1
Q ss_pred cccccchHHHHHHHHhHHHHHHHHHhhc
Q 023919 179 STDGFSIGNILLDFLGGCTNYSQMIVQS 206 (275)
Q Consensus 179 st~GlS~~~~~l~~~G~~~~~~s~~~~~ 206 (275)
.++.++.....++..|....+...+..+
T Consensus 399 ~~k~~~~~~~~i~~~~s~~~~~~~~~~~ 426 (495)
T KOG2533|consen 399 NTKALTTVSAIIDGTGSAGAISGQLFRS 426 (495)
T ss_pred hHHhHHHHhhhhcchhHHHHhhhhhccc
Confidence 3444455555555555555554444433
No 31
>PHA00726 hypothetical protein
Probab=36.65 E-value=50 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccccccc
Q 023919 225 SLVSVVFDLLFICQHYVLYPAKKAVISSK 253 (275)
Q Consensus 225 ~~~~i~~d~ii~~Q~~~~Y~~~~~~~~~~ 253 (275)
+-+.+.+|.+++.-. +++|+.|++++.+
T Consensus 9 aei~l~fD~i~l~~s-LLFRKpK~k~~~~ 36 (89)
T PHA00726 9 AEIVLVFDTIMLTTA-LLFRKPKPKKVKS 36 (89)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCCCchhhc
Confidence 345778999999987 5999999877543
No 32
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.86 E-value=45 Score=30.36 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.0
Q ss_pred hhccCCcccccc
Q 023919 241 VLYPAKKAVISS 252 (275)
Q Consensus 241 ~~Y~~~~~~~~~ 252 (275)
.+||+||+...+
T Consensus 281 WlyrrRK~swkh 292 (295)
T TIGR01478 281 WLYRRRKKSWKH 292 (295)
T ss_pred HHHHhhcccccc
Confidence 489999886654
No 33
>PF07458 SPAN-X: Sperm protein associated with nucleus, mapped to X chromosome; InterPro: IPR010007 This entry represents SPANX (Sperm Protein Associated with the Nucleus on the X chromosome) family proteins, including N1, N2, N3 and N5. These human sperm proteins are associated with the nucleus and mapped to the X chromosome (SPAN-X) (approximately 100 residues long). SPAN-X proteins are cancer-testis antigens (CTAs), and thus represent potential targets for cancer immunotherapy because they are widely distributed in tumours but not in normal tissues, except testes. They are highly insoluble, acidic, and polymorphic [].
Probab=32.84 E-value=18 Score=27.18 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=13.0
Q ss_pred hccCCcccccccCCCCCCCCC
Q 023919 242 LYPAKKAVISSKLSKDGGVEP 262 (275)
Q Consensus 242 ~Y~~~~~~~~~~~~~~~~~~~ 262 (275)
+||+++.+...|++++..++.
T Consensus 55 ~yrk~kK~~snqLeNdqs~En 75 (97)
T PF07458_consen 55 YYRKNKKINSNQLENDQSREN 75 (97)
T ss_pred EEecCceeChhhhcccccccc
Confidence 688887766666555544433
No 34
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.99 E-value=59 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhhhccCCcccc
Q 023919 226 LVSVVFDLLFICQHYVLYPAKKAVI 250 (275)
Q Consensus 226 ~~~i~~d~ii~~Q~~~~Y~~~~~~~ 250 (275)
++++.+-++++.=.+..||++++..
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhh
Confidence 3344433444433344677665533
No 35
>PTZ00370 STEVOR; Provisional
Probab=28.66 E-value=52 Score=30.01 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=9.2
Q ss_pred hhhccCCcccccc
Q 023919 240 YVLYPAKKAVISS 252 (275)
Q Consensus 240 ~~~Y~~~~~~~~~ 252 (275)
+.+||+||+...+
T Consensus 276 iwlyrrRK~swkh 288 (296)
T PTZ00370 276 IWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHhhcchhHH
Confidence 3489998876644
No 36
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.89 E-value=1.2e+02 Score=29.92 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcccceeeeecccc-cccccchHHHH
Q 023919 154 FFNAIQVIMTLIKYIPQAIMNFRRK-STDGFSIGNIL 189 (275)
Q Consensus 154 ~~g~~~~~~~~~~~~PQi~~N~~~k-st~GlS~~~~~ 189 (275)
++-.+-.+++---++|||..|-+|+ |-.-+...+++
T Consensus 452 yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIl 488 (636)
T KOG0828|consen 452 YFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYIL 488 (636)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhh
Confidence 3444444555567899999999995 44335554433
No 37
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.78 E-value=27 Score=24.40 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.9
Q ss_pred HhCCccccChHHHHHHHHHHHH
Q 023919 37 RRKSVVGLNFDFVLLNLTKHSS 58 (275)
Q Consensus 37 r~KS~~GLS~~f~~l~l~g~~~ 58 (275)
+..++.||||..+.+-.++++.
T Consensus 3 ~~~~~KGlnPGlIVLlvV~g~l 24 (69)
T PF04689_consen 3 KDREAKGLNPGLIVLLVVAGLL 24 (69)
T ss_pred ccccccCCCCCeEEeehHHHHH
Confidence 3467799999999998888765
No 38
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=22.37 E-value=65 Score=29.55 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023919 254 LSKDGGVEPLLKSSDHPE 271 (275)
Q Consensus 254 ~~~~~~~~~ll~~~~~~~ 271 (275)
+|+++|+.|||+.++++.
T Consensus 215 ~e~s~Ee~PLL~~~~~~~ 232 (308)
T PF14800_consen 215 EEGSEEERPLLPAGSEPS 232 (308)
T ss_pred CCCchhhccCccCCCCCC
Confidence 457889999999877743
No 39
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=21.35 E-value=1.8e+02 Score=26.20 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 023919 218 NIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 248 (275)
Q Consensus 218 ~~~~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~ 248 (275)
|........+.+++=+..+.+++.-|+++++
T Consensus 201 NlADi~I~~G~~llv~~~li~~~~~~~~~~~ 231 (263)
T PRK14780 201 NLFDVYIVVGVCVLVVILIISFIIKWKKDKD 231 (263)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4443333333443334555565334554444
No 40
>PRK15049 L-asparagine permease; Provisional
Probab=20.40 E-value=6.9e+02 Score=24.29 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 023919 148 WLWLINFF 155 (275)
Q Consensus 148 ~~~~~~~~ 155 (275)
++++.+..
T Consensus 378 f~~l~~~~ 385 (499)
T PRK15049 378 FEIVLNFA 385 (499)
T ss_pred HHHHHHHH
Confidence 33344433
No 41
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.09 E-value=1.2e+02 Score=26.81 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=9.2
Q ss_pred cchHHHHHHHHhHHHHHH
Q 023919 183 FSIGNILLDFLGGCTNYS 200 (275)
Q Consensus 183 lS~~~~~l~~~G~~~~~~ 200 (275)
.-..+++-.++|++...+
T Consensus 11 ~~~~illg~~iGg~~G~~ 28 (248)
T PF11368_consen 11 FLLLILLGGLIGGFIGFF 28 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445566665544
Done!