Query 023919
Match_columns 275
No_of_seqs 208 out of 1465
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljb_A M2 protein, BM2 protein 40.0 53 0.0018 19.0 4.0 29 4-32 4-32 (35)
2 3l1l_A Arginine/agmatine antip 24.7 3.2E+02 0.011 24.1 9.0 13 188-200 388-400 (445)
3 3bkd_A Transmembrane domain of 19.5 1.2E+02 0.0041 16.2 3.4 23 6-28 2-24 (26)
4 2kih_A Matrix protein 2; S31N, 18.1 1.7E+02 0.0059 17.5 3.6 26 4-29 4-29 (43)
5 4djk_A Probable glutamate/gamm 8.2 1E+03 0.036 21.0 10.7 17 188-204 413-429 (511)
6 2knc_A Integrin alpha-IIB; tra 7.9 4.7E+02 0.016 16.7 4.9 6 243-248 39-44 (54)
7 3lbw_A M2 protein; proton chan 5.9 3.9E+02 0.013 13.8 2.9 21 9-29 2-22 (23)
8 2l2t_A Receptor tyrosine-prote 5.4 5.4E+02 0.019 15.6 2.8 14 234-248 25-38 (44)
9 3hki_C Proteinase-activated re 5.0 2.9E+02 0.01 14.2 1.1 10 257-266 8-17 (21)
10 2jwa_A Receptor tyrosine-prote 4.0 5.6E+02 0.019 15.6 2.1 33 220-253 12-44 (44)
No 1
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=39.97 E-value=53 Score=19.02 Aligned_cols=29 Identities=28% Similarity=0.646 Sum_probs=24.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhhHHH
Q 023919 4 WNSVPLEITYQVLGWISFVAWSVSFYPQV 32 (275)
Q Consensus 4 ~~~~~~~~is~ilG~~~~~~~~~s~iPQi 32 (275)
-.++++.+.++++|..=+..|.+-++-|+
T Consensus 4 dSsDplviaA~IigiLHlilWildrLff~ 32 (35)
T 2ljb_A 4 DSSDPLVVAASIIGILHFIAWTIGHLNQI 32 (35)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 35788999999999999999999888765
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.70 E-value=3.2e+02 Score=24.07 Aligned_cols=13 Identities=0% Similarity=-0.251 Sum_probs=6.6
Q ss_pred HHHHHHhHHHHHH
Q 023919 188 ILLDFLGGCTNYS 200 (275)
Q Consensus 188 ~~l~~~G~~~~~~ 200 (275)
..+..+|.++.+.
T Consensus 388 ~~~~~~~~~~~~~ 400 (445)
T 3l1l_A 388 LAVTTIAFLYCIW 400 (445)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=19.46 E-value=1.2e+02 Score=16.25 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhhh
Q 023919 6 SVPLEITYQVLGWISFVAWSVSF 28 (275)
Q Consensus 6 ~~~~~~is~ilG~~~~~~~~~s~ 28 (275)
++++-...+++|..-...|+.-+
T Consensus 2 sDplv~aa~iiGilHLiLwIldr 24 (26)
T 3bkd_A 2 SDPLVVAASIMGILHLILWILDR 24 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHhh
Confidence 56788899999999999998765
No 4
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=18.07 E-value=1.7e+02 Score=17.49 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=21.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhh
Q 023919 4 WNSVPLEITYQVLGWISFVAWSVSFY 29 (275)
Q Consensus 4 ~~~~~~~~is~ilG~~~~~~~~~s~i 29 (275)
-.++++-...+++|..-+..|+.-++
T Consensus 4 dssdplv~aa~iiGIlHLiLwildRl 29 (43)
T 2kih_A 4 DSSDPLVVAANIIGILHLILWILDRL 29 (43)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999998654
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=8.24 E-value=1e+03 Score=21.00 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=10.1
Q ss_pred HHHHHHhHHHHHHHHHh
Q 023919 188 ILLDFLGGCTNYSQMIV 204 (275)
Q Consensus 188 ~~l~~~G~~~~~~s~~~ 204 (275)
...+..|.+..++.++.
T Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (511)
T 4djk_A 413 LVVAIVGLLTSIMAFIV 429 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHe
Confidence 45666666666655444
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.88 E-value=4.7e+02 Score=16.66 Aligned_cols=6 Identities=0% Similarity=0.429 Sum_probs=2.6
Q ss_pred ccCCcc
Q 023919 243 YPAKKA 248 (275)
Q Consensus 243 Y~~~~~ 248 (275)
++++++
T Consensus 39 FkR~~~ 44 (54)
T 2knc_A 39 FKRNRP 44 (54)
T ss_dssp TTTTCC
T ss_pred ccCCCC
Confidence 444443
No 7
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=5.88 E-value=3.9e+02 Score=13.84 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 023919 9 LEITYQVLGWISFVAWSVSFY 29 (275)
Q Consensus 9 ~~~is~ilG~~~~~~~~~s~i 29 (275)
+-...+++|..-...|+.-++
T Consensus 2 lv~aa~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 2 LVVAASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred eehhHHHHHHHHHHHHHHhhc
Confidence 456788999999999987654
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.43 E-value=5.4e+02 Score=15.60 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=6.0
Q ss_pred HHHhhhhhhccCCcc
Q 023919 234 LFICQHYVLYPAKKA 248 (275)
Q Consensus 234 ii~~Q~~~~Y~~~~~ 248 (275)
++..=.+ +|.++++
T Consensus 25 ii~~~~~-~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFA-VYVRRKS 38 (44)
T ss_dssp HHHHHHH-HHHHTTC
T ss_pred HHHHHHH-HHhhhhh
Confidence 3333333 4554444
No 9
>3hki_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, cleavage on basic residues, disulfide bond; HET: NAG; 2.20A {Homo sapiens} PDB: 3hkj_C*
Probab=5.04 E-value=2.9e+02 Score=14.15 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 023919 257 DGGVEPLLKS 266 (275)
Q Consensus 257 ~~~~~~ll~~ 266 (275)
+++-||+.++
T Consensus 8 ~~~fEp~~~d 17 (21)
T 3hki_C 8 NDKYEPFWED 17 (26)
T ss_pred cccccccccc
Confidence 3455588554
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=3.97 E-value=5.6e+02 Score=15.55 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCccccccc
Q 023919 220 GKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSK 253 (275)
Q Consensus 220 ~~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~~~~~~ 253 (275)
+.++.+.+.+++-.++..=.. +|.+++++++.+
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~-~~~RRR~~~~kK 44 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFG-ILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCCCC
T ss_pred cchHHHHHHHHHHHHHHHHHH-hheehhhhhccC
Done!