Query 023919
Match_columns 275
No_of_seqs 208 out of 1465
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 15:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023919.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023919hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qtva1 a.71.2.1 (A:524-626) S 4.5 1.4E+02 0.01 20.0 1.4 15 26-40 57-71 (103)
2 d1v7fa_ g.3.6.2 (A:) Phrixotox 4.1 1.3E+02 0.0093 15.1 0.6 8 176-183 12-19 (29)
3 d1y8oa1 a.29.5.1 (A:13-176) Py 3.2 3E+02 0.022 19.7 2.3 22 30-51 1-22 (164)
4 d2ffta1 g.88.1.1 (A:2-84) Thyl 3.1 3.4E+02 0.025 17.0 2.2 12 259-270 30-41 (83)
5 d1jm6a1 a.29.5.1 (A:1003-1169) 2.8 3.9E+02 0.028 19.1 2.6 26 26-51 3-28 (167)
6 d2j8cm1 f.26.1.1 (M:1-303) M ( 2.8 3.8E+02 0.028 21.3 2.7 35 179-213 261-295 (303)
7 d1eysm_ f.26.1.1 (M:) M (mediu 2.3 4.7E+02 0.034 20.9 2.7 33 179-211 260-292 (318)
8 d1m15a1 a.83.1.1 (A:2-95) Argi 2.2 4.3E+02 0.031 17.1 2.0 23 28-50 30-53 (94)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 1.7 3.9E+02 0.028 18.5 1.0 29 210-238 57-88 (130)
10 d2i5nm1 f.26.1.1 (M:1-323) M ( 1.7 5.9E+02 0.043 20.2 2.2 31 179-209 259-289 (323)
No 1
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.53 E-value=1.4e+02 Score=20.05 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHhCC
Q 023919 26 VSFYPQVILNFRRKS 40 (275)
Q Consensus 26 ~s~iPQi~~N~r~KS 40 (275)
++.+||.+.+.||..
T Consensus 57 fs~~PqfmfhLRRS~ 71 (103)
T d2qtva1 57 FSLYPQFTYYLRRSQ 71 (103)
T ss_dssp TTTHHHHHHHHHTST
T ss_pred HHhhHHHHHHHhhhh
Confidence 578999999999953
No 2
>d1v7fa_ g.3.6.2 (A:) Phrixotoxin 1 (PaTX1) {Chilean copper tarantula (Phrixotrichus auratus) [TaxId: 269635]}
Probab=4.09 E-value=1.3e+02 Score=15.06 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=5.6
Q ss_pred cccccccc
Q 023919 176 RRKSTDGF 183 (275)
Q Consensus 176 ~~kst~Gl 183 (275)
+||+++|+
T Consensus 12 ~rkccegl 19 (29)
T d1v7fa_ 12 ARKCCEGL 19 (29)
T ss_dssp TCCBCTTC
T ss_pred hhhhhccc
Confidence 56777775
No 3
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.21 E-value=3e+02 Score=19.71 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCccccChHHHHH
Q 023919 30 PQVILNFRRKSVVGLNFDFVLL 51 (275)
Q Consensus 30 PQi~~N~r~KS~~GLS~~f~~l 51 (275)
|+.+..|.+|+..|+|+.-++-
T Consensus 1 ~~~i~~ya~~~~t~lSL~ql~~ 22 (164)
T d1y8oa1 1 PKQIERYSRFSPSPLSIKQFLD 22 (164)
T ss_dssp CHHHHHHHHSCCCCCBHHHHHH
T ss_pred CHHHHHHHcCCCCCCCHHHHHH
Confidence 7889999999999999987664
No 4
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=3.09 E-value=3.4e+02 Score=16.98 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 023919 259 GVEPLLKSSDHP 270 (275)
Q Consensus 259 ~~~~ll~~~~~~ 270 (275)
|.+|+|...|+.
T Consensus 30 ETdPILkkv~~K 41 (83)
T d2ffta1 30 ETDPILRGGDVK 41 (83)
T ss_dssp CSCCSSSCSCCC
T ss_pred ccchhhhccccc
Confidence 888999888773
No 5
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=2.82 E-value=3.9e+02 Score=19.09 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHhCCccccChHHHHH
Q 023919 26 VSFYPQVILNFRRKSVVGLNFDFVLL 51 (275)
Q Consensus 26 ~s~iPQi~~N~r~KS~~GLS~~f~~l 51 (275)
++-.|+.+..|.+++..++|+.-++.
T Consensus 3 ~~~~~~~I~~ya~~~~tplSL~ql~~ 28 (167)
T d1jm6a1 3 LAGAPKYIEHFSKFSPSPLSMKQFLD 28 (167)
T ss_dssp TTSHHHHHHHHTTSCCCCCBHHHHHT
T ss_pred hhhhHHHHHHHHcCCCCCCCHHHHHH
Confidence 35679999999999999999886654
No 6
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.78 E-value=3.8e+02 Score=21.28 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=28.5
Q ss_pred cccccchHHHHHHHHhHHHHHHHHHhhcccccccc
Q 023919 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWV 213 (275)
Q Consensus 179 st~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~ 213 (275)
+++|+......+.+++..+..+.+++.+...+||.
T Consensus 261 ~~~~IHr~~~~~av~~~~~saigIllsGtvvd~W~ 295 (303)
T d2j8cm1 261 TMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWY 295 (303)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTBTTTBSCHH
T ss_pred CchHHHHHHHHHHHHHHHHhheeEEEecccccCHH
Confidence 67888888899999999999999888887655554
No 7
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.34 E-value=4.7e+02 Score=20.86 Aligned_cols=33 Identities=6% Similarity=-0.062 Sum_probs=23.9
Q ss_pred cccccchHHHHHHHHhHHHHHHHHHhhcccccc
Q 023919 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQNS 211 (275)
Q Consensus 179 st~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~ 211 (275)
+++|+......+.+++.....+.+++.+...++
T Consensus 260 ~~~~IHr~~~~~av~~~~~saigIllsGtvvd~ 292 (318)
T d1eysm_ 260 TMESIHRWAWWCAVLTVITAGIGILLSGTVVDN 292 (318)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTBTTTBSC
T ss_pred ccHHHHHHHHHHHHHHHHhhheeEEEecccccc
Confidence 567777777888888888888777776665433
No 8
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=2.24 E-value=4.3e+02 Score=17.08 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhCCc-cccChHHHH
Q 023919 28 FYPQVILNFRRKSV-VGLNFDFVL 50 (275)
Q Consensus 28 ~iPQi~~N~r~KS~-~GLS~~f~~ 50 (275)
+.|++++.+|.|++ .|.+++=.+
T Consensus 30 LT~ev~~~lk~k~T~~G~tl~~~I 53 (94)
T d1m15a1 30 LTKDVFDSIKNKKTGMGATLLDVI 53 (94)
T ss_dssp CCHHHHHHHTTCBCTTCCBHHHHH
T ss_pred CCHHHHHHHhcCCCCCCCcHHHHH
Confidence 45999999999887 677766443
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=1.72 E-value=3.9e+02 Score=18.46 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=16.3
Q ss_pred cccchhhhcHHHHHHH---HHHHHHHHHHHhh
Q 023919 210 NSWVNFYGNIGKTLLS---LVSVVFDLLFICQ 238 (275)
Q Consensus 210 ~~~~~~~~~~~~l~~~---~~~i~~d~ii~~Q 238 (275)
++|..+..||..+++. +...+++..-..+
T Consensus 57 ~~fv~flqnP~vv~lniiaLaa~L~Ha~TwF~ 88 (130)
T d1kf6c_ 57 AGFVDFLQNPVIVIINLITLAAALLHTKTWFE 88 (130)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888777554 4444444444444
No 10
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=1.67 E-value=5.9e+02 Score=20.21 Aligned_cols=31 Identities=0% Similarity=-0.032 Sum_probs=18.6
Q ss_pred cccccchHHHHHHHHhHHHHHHHHHhhcccc
Q 023919 179 STDGFSIGNILLDFLGGCTNYSQMIVQSIDQ 209 (275)
Q Consensus 179 st~GlS~~~~~l~~~G~~~~~~s~~~~~~~~ 209 (275)
+++|+......+.+.+.+...+.+++.+...
T Consensus 259 ~~~gIHR~~~~~Av~~~~tsaigIllsGt~v 289 (323)
T d2i5nm1 259 TIESVHRWGWFFSLMVMVSASVGILLTGTFV 289 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHBTTTB
T ss_pred chHHHHHHHHHHHHHHHHHhheeEEEeCCcc
Confidence 3455555666666666666666666655543
Done!