Query 023921
Match_columns 275
No_of_seqs 362 out of 2358
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4656 Copper chaperone for s 100.0 2.1E-39 4.6E-44 277.7 14.1 174 92-265 5-193 (247)
2 PLN02957 copper, zinc superoxi 100.0 8.4E-37 1.8E-41 274.0 22.1 177 90-266 2-192 (238)
3 PLN02642 copper, zinc superoxi 99.9 2.4E-25 5.3E-30 188.2 10.4 97 169-265 8-127 (164)
4 PLN02386 superoxide dismutase 99.9 5.6E-25 1.2E-29 184.7 11.1 97 169-265 2-121 (152)
5 cd00305 Cu-Zn_Superoxide_Dismu 99.9 4.2E-23 9E-28 172.1 10.8 95 170-265 2-120 (144)
6 PRK15388 Cu/Zn superoxide dism 99.9 6.5E-22 1.4E-26 169.0 10.7 87 178-265 37-152 (177)
7 PRK10290 superoxide dismutase; 99.9 1.5E-21 3.2E-26 166.6 9.8 87 178-265 35-149 (173)
8 KOG0441 Cu2+/Zn2+ superoxide d 99.9 3E-21 6.4E-26 159.9 11.0 96 170-265 3-123 (154)
9 PF00080 Sod_Cu: Copper/zinc s 99.8 1.1E-19 2.3E-24 150.8 9.7 96 171-266 1-122 (142)
10 COG2032 SodC Cu/Zn superoxide 99.8 1.5E-19 3.3E-24 153.4 9.1 87 179-266 41-156 (179)
11 PF00403 HMA: Heavy-metal-asso 99.3 1.6E-11 3.5E-16 87.2 8.8 58 97-154 1-62 (62)
12 COG2608 CopZ Copper chaperone 99.2 9.5E-11 2.1E-15 86.3 9.1 64 95-158 3-70 (71)
13 KOG1603 Copper chaperone [Inor 98.6 4.4E-07 9.6E-12 67.0 8.7 64 95-158 6-70 (73)
14 PRK10671 copA copper exporting 98.1 1.1E-05 2.3E-10 84.7 8.1 64 94-159 3-67 (834)
15 COG2217 ZntA Cation transport 97.9 2.9E-05 6.3E-10 79.8 7.9 62 95-157 3-69 (713)
16 TIGR00003 copper ion binding p 97.6 0.0008 1.7E-08 44.5 8.7 61 95-155 3-67 (68)
17 KOG0207 Cation transport ATPas 97.5 0.00032 7E-09 72.8 7.7 69 94-162 146-218 (951)
18 KOG0207 Cation transport ATPas 97.4 0.00046 9.9E-09 71.7 7.4 68 95-162 70-141 (951)
19 PRK10671 copA copper exporting 96.7 0.0047 1E-07 65.0 8.2 65 94-158 99-164 (834)
20 PRK11033 zntA zinc/cadmium/mer 96.7 0.0083 1.8E-07 62.4 9.8 66 93-158 52-119 (741)
21 TIGR02052 MerP mercuric transp 92.9 1.7 3.6E-05 31.2 9.5 62 96-157 25-90 (92)
22 PF01206 TusA: Sulfurtransfera 87.3 2.6 5.7E-05 30.0 6.2 54 97-159 2-58 (70)
23 cd00371 HMA Heavy-metal-associ 87.2 4.2 9E-05 23.7 7.3 55 99-153 3-60 (63)
24 PRK13748 putative mercuric red 84.2 5.9 0.00013 39.5 9.1 64 97-160 3-69 (561)
25 PRK11018 hypothetical protein; 76.6 15 0.00032 27.1 6.8 54 96-158 9-65 (78)
26 cd03420 SirA_RHOD_Pry_redox Si 68.8 21 0.00044 25.5 5.9 53 98-159 2-57 (69)
27 cd03421 SirA_like_N SirA_like_ 68.0 17 0.00038 25.5 5.4 52 98-159 2-56 (67)
28 COG1888 Uncharacterized protei 66.2 48 0.001 25.6 7.5 64 95-158 7-79 (97)
29 cd03423 SirA SirA (also known 65.0 31 0.00068 24.5 6.2 53 98-159 2-57 (69)
30 cd00291 SirA_YedF_YeeD SirA, Y 64.7 35 0.00075 23.8 6.4 53 98-159 2-57 (69)
31 cd03422 YedF YedF is a bacteri 63.6 30 0.00066 24.7 6.0 52 98-158 2-56 (69)
32 PRK00299 sulfur transfer prote 61.6 50 0.0011 24.4 7.0 55 95-158 9-66 (81)
33 PF02680 DUF211: Uncharacteriz 55.9 45 0.00098 25.9 5.9 63 95-158 6-77 (95)
34 COG0425 SirA Predicted redox p 54.3 79 0.0017 23.4 6.9 55 95-158 5-63 (78)
35 PF07452 CHRD: CHRD domain; I 47.2 44 0.00096 26.0 4.9 38 180-218 20-58 (119)
36 PF01883 DUF59: Domain of unkn 42.8 44 0.00096 23.7 3.9 32 95-126 35-72 (72)
37 TIGR03527 selenium_YedF seleni 36.1 86 0.0019 27.3 5.4 50 101-159 5-56 (194)
38 PRK14054 methionine sulfoxide 29.7 1.1E+02 0.0024 26.2 4.9 45 105-149 10-76 (172)
39 smart00754 CHRD A domain in th 28.4 1.6E+02 0.0035 22.9 5.4 36 179-214 19-54 (118)
40 PF07731 Cu-oxidase_2: Multico 25.3 54 0.0012 26.0 2.1 22 193-214 41-62 (138)
41 PF13299 CPSF100_C: Cleavage a 24.9 1.7E+02 0.0036 24.7 5.1 51 136-201 97-147 (161)
42 PF13732 DUF4162: Domain of un 22.9 2.9E+02 0.0062 19.7 5.6 47 115-163 26-74 (84)
43 PRK00058 methionine sulfoxide 22.2 1.8E+02 0.0039 25.9 4.9 44 105-148 52-117 (213)
44 PF09580 Spore_YhcN_YlaJ: Spor 20.8 2.6E+02 0.0057 23.3 5.6 33 105-137 74-106 (177)
45 PF14437 MafB19-deam: MafB19-l 20.6 2.3E+02 0.0049 23.8 4.9 37 94-131 100-138 (146)
46 TIGR03406 FeS_long_SufT probab 20.1 1.3E+02 0.0028 25.8 3.6 21 108-128 133-153 (174)
No 1
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=277.74 Aligned_cols=174 Identities=39% Similarity=0.556 Sum_probs=159.9
Q ss_pred CceEEEEEecCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCCHHHHHHHHHhcCCceEEeCCCCCccccccce
Q 023921 92 PELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAA 171 (275)
Q Consensus 92 ~~~~v~~~VGM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~l~~~g~~~~~~~~~A 171 (275)
+..+++|.|.|+|++|++.|++.|+.++||.+++||+..+.+.|....++.+|.+.|+.+|.++.+++.|.+..+++.++
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~psaval~at 84 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKPSAVALLAT 84 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCchhHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred eeeecCC-ceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCCCCccccCCCcCCCCCCCCCCCCcc---eeec
Q 023921 172 VAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKEVCFS---VFLC 247 (275)
Q Consensus 172 va~~~G~-~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~g~~saGgh~np~~~~hg~~~~g~---l~~~ 247 (275)
++.+.|+ .|+|.|||.|...+.++|++++.||+||.||+||||+||+++||.|+|.||||++.+||....|| +-.|
T Consensus 85 ~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~gDLGn~~ad 164 (247)
T KOG4656|consen 85 VAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNEGDLGNNRAD 164 (247)
T ss_pred HHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCcccccccccc
Confidence 9999998 79999999999988999999999999999999999999999999999999999999998755444 2222
Q ss_pred -----------CceeEeeeeceeeEEecC
Q 023921 248 -----------STYYFSFICVHESVVDEM 265 (275)
Q Consensus 248 -----------~~~~~~~~~gr~~vih~~ 265 (275)
..+++|++|||++||+..
T Consensus 165 ~nGraf~s~~de~LkvwdlIGRsvVi~k~ 193 (247)
T KOG4656|consen 165 KNGRAFFSAPDEKLKVWDLIGRSVVISKS 193 (247)
T ss_pred cCCcEEEecccccccHhhhhceeEEEecc
Confidence 248899999999999654
No 2
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=8.4e-37 Score=273.96 Aligned_cols=177 Identities=68% Similarity=1.004 Sum_probs=158.2
Q ss_pred CCCceEEEEEecCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCCHHHHHHHHHhcCCceEEeCCCCCcccccc
Q 023921 90 GLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVS 169 (275)
Q Consensus 90 ~~~~~~v~~~VGM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~l~~~g~~~~~~~~ 169 (275)
.+++.+++|.++|.|..|+.+|++.|++++||..+.+++..+++.|.+....+++.+.+++.||.+++++.+.++.+...
T Consensus 2 ~~~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~~~~~~ 81 (238)
T PLN02957 2 ALPELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPEDFLVS 81 (238)
T ss_pred CCCcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCccccccc
Confidence 35677788888999999999999999999999999999999999999877888999999999999999999988877788
Q ss_pred ceeeeecCCceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCCCCccccCCCcCCCCCCCCCCC---Ccceee
Q 023921 170 AAVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKEV---CFSVFL 246 (275)
Q Consensus 170 ~Ava~~~G~~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~g~~saGgh~np~~~~hg~~~---~g~l~~ 246 (275)
+|++.++|..+.|+++|+|.++++++|+++|+||+||+|||||||+|||++||.|+|+||||++++||..+ +|+|++
T Consensus 82 ~av~~~~g~~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~~~h~GDLgni~~ 161 (238)
T PLN02957 82 AAVAEFKGPDIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTDEEPLGDLGTLEA 161 (238)
T ss_pred eEEEEecCCceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCCCCCCCccCCEEe
Confidence 99999999999999999998765699999999999999999999999999999999999999999998544 445666
Q ss_pred cCc-----------eeEeeeeceeeEEecCC
Q 023921 247 CST-----------YYFSFICVHESVVDEMG 266 (275)
Q Consensus 247 ~~~-----------~~~~~~~gr~~vih~~G 266 (275)
+.+ +++|+++||++|||+..
T Consensus 162 ~~~G~a~~~~~~~~~~l~~iiGrs~vih~~~ 192 (238)
T PLN02957 162 DENGEATFSGTKEKLKVWDLIGRSLAVYATA 192 (238)
T ss_pred CCCceEEEEEECCCcCccccCCcEEEEEeCC
Confidence 542 55678899999998754
No 3
>PLN02642 copper, zinc superoxide dismutase
Probab=99.92 E-value=2.4e-25 Score=188.22 Aligned_cols=97 Identities=31% Similarity=0.372 Sum_probs=82.1
Q ss_pred cceeeeecCC-ceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCCCCccccCCCcCCCCCCCCCC--------
Q 023921 169 SAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKE-------- 239 (275)
Q Consensus 169 ~~Ava~~~G~-~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~g~~saGgh~np~~~~hg~~-------- 239 (275)
.+|+++++|. .+.|+|+|+|..+++++|+++|+||+||+|||||||+|||++||.|+|+||||.+++||..
T Consensus 8 ~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~G 87 (164)
T PLN02642 8 LRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAG 87 (164)
T ss_pred eeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCccc
Confidence 4789999876 5999999999876679999999999999999999999999999999999999999999842
Q ss_pred CCcceeecCc-----------ee---EeeeeceeeEEecC
Q 023921 240 VCFSVFLCST-----------YY---FSFICVHESVVDEM 265 (275)
Q Consensus 240 ~~g~l~~~~~-----------~~---~~~~~gr~~vih~~ 265 (275)
++|+|+++.+ ++ .++++||++|||+.
T Consensus 88 DLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~ 127 (164)
T PLN02642 88 DLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127 (164)
T ss_pred ccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEecc
Confidence 2455776652 22 36788999999863
No 4
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=99.92 E-value=5.6e-25 Score=184.70 Aligned_cols=97 Identities=27% Similarity=0.332 Sum_probs=81.9
Q ss_pred cceeeeecCC-ceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCCCCccccCCCcCCCCCCCCC--------C
Q 023921 169 SAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAK--------E 239 (275)
Q Consensus 169 ~~Ava~~~G~-~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~g~~saGgh~np~~~~hg~--------~ 239 (275)
.+|+|.++|. .+.|+|+|+|.+++.++|+++|+||+||+|||||||+|||+++|.|+||||||.+++||. +
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G 81 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG 81 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence 3688999886 499999999987767999999999999999999999999999999999999999999975 2
Q ss_pred CCcceeecCc-----------ee---EeeeeceeeEEecC
Q 023921 240 VCFSVFLCST-----------YY---FSFICVHESVVDEM 265 (275)
Q Consensus 240 ~~g~l~~~~~-----------~~---~~~~~gr~~vih~~ 265 (275)
++|+|+++.+ ++ .++++||++|||+.
T Consensus 82 DLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~ 121 (152)
T PLN02386 82 DLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHAD 121 (152)
T ss_pred cccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEcc
Confidence 2566776642 22 26788999999863
No 5
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=99.89 E-value=4.2e-23 Score=172.09 Aligned_cols=95 Identities=34% Similarity=0.437 Sum_probs=80.5
Q ss_pred ceeeeecCC--ceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCCCCccccCCCcCCCCCCCCC--------C
Q 023921 170 AAVAEFKGP--DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAK--------E 239 (275)
Q Consensus 170 ~Ava~~~G~--~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~g~~saGgh~np~~~~hg~--------~ 239 (275)
+|++.+++. ++.|+|+|+|..+ +++|++++.||+||+|||||||+|||+.+|.|+|+||||.+..||. +
T Consensus 2 ~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~G 80 (144)
T cd00305 2 SAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHAG 80 (144)
T ss_pred cEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCCC
Confidence 578888876 4999999999986 8999999999999999999999999999999999999999999975 2
Q ss_pred CCcceeecC-----------ceeEe---eeeceeeEEecC
Q 023921 240 VCFSVFLCS-----------TYYFS---FICVHESVVDEM 265 (275)
Q Consensus 240 ~~g~l~~~~-----------~~~~~---~~~gr~~vih~~ 265 (275)
++++|+++. .+.++ +++||++|||+.
T Consensus 81 DLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~ 120 (144)
T cd00305 81 DLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAG 120 (144)
T ss_pred cCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecC
Confidence 255577764 24455 778888888864
No 6
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=99.87 E-value=6.5e-22 Score=169.03 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=70.4
Q ss_pred CceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCC----CC----ccccCCCcCCCCC-CCCC--------CC
Q 023921 178 PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLT----KG----AVSTGRVYNPKIE-GSAK--------EV 240 (275)
Q Consensus 178 ~~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~----~g----~~saGgh~np~~~-~hg~--------~~ 240 (275)
.++.|+++|+|.++ +++|++++.||+||+|||||||+|||+ +| |.||||||||.++ .||. ++
T Consensus 37 g~~~G~v~f~~~~~-gv~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~GD 115 (177)
T PRK15388 37 GENIGEITVSETPY-GLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGD 115 (177)
T ss_pred CceEEEEEEEEcCC-cEEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCcCc
Confidence 37899999999975 699999999999999999999999997 33 8999999999988 6753 12
Q ss_pred CcceeecCc-----------ee-EeeeeceeeEEecC
Q 023921 241 CFSVFLCST-----------YY-FSFICVHESVVDEM 265 (275)
Q Consensus 241 ~g~l~~~~~-----------~~-~~~~~gr~~vih~~ 265 (275)
+++|+++.+ ++ +++++||++|||+.
T Consensus 116 LpNi~a~~dG~a~~~~~~~~~~~~~~i~GralVIHa~ 152 (177)
T PRK15388 116 LPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKG 152 (177)
T ss_pred CcCEEECCCccEEEEEEeCCcccCcccCCcEEEEECC
Confidence 455787753 33 46777888888764
No 7
>PRK10290 superoxide dismutase; Provisional
Probab=99.86 E-value=1.5e-21 Score=166.63 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=69.5
Q ss_pred CceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCC----CC----ccccCCCcCCCCC-CCCC----CC---C
Q 023921 178 PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLT----KG----AVSTGRVYNPKIE-GSAK----EV---C 241 (275)
Q Consensus 178 ~~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~----~g----~~saGgh~np~~~-~hg~----~~---~ 241 (275)
.++.|+++|+|.++ +++|+++++||+||+|||||||+|||+ +| |.|+||||||.++ .||. .+ +
T Consensus 35 g~~~G~v~f~~~~~-gv~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~~~H~GDL 113 (173)
T PRK10290 35 GQSIGSVTITETDK-GLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEGAGHLGDL 113 (173)
T ss_pred CceEEEEEEEEcCC-cEEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCCCCCcCcc
Confidence 47899999999975 699999999999999999999999998 44 8899999999998 5653 12 4
Q ss_pred cceeecCc-----------ee-EeeeeceeeEEecC
Q 023921 242 FSVFLCST-----------YY-FSFICVHESVVDEM 265 (275)
Q Consensus 242 g~l~~~~~-----------~~-~~~~~gr~~vih~~ 265 (275)
++|+++.+ ++ +.+++||++|||+.
T Consensus 114 ~ni~a~~dG~a~~~~~~~~~~~~~~i~GralVIH~~ 149 (173)
T PRK10290 114 PALVVNNDGKATDPVIAPRLKSLDEVKDKALMVHVG 149 (173)
T ss_pred cCEEECCCeeEEEEEEeCCccCccccCCcEEEEECC
Confidence 45787753 22 33467888888764
No 8
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3e-21 Score=159.88 Aligned_cols=96 Identities=31% Similarity=0.424 Sum_probs=78.5
Q ss_pred ceeeeecCC--ceeeEEEEee-ecCccEEEEEEecCCCCCccceEEcccCCCCCCccccCCCcCCCCCCCCCC-----C-
Q 023921 170 AAVAEFKGP--DVFGVVRLAQ-VNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKE-----V- 240 (275)
Q Consensus 170 ~Ava~~~G~--~v~G~v~~~q-~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~g~~saGgh~np~~~~hg~~-----~- 240 (275)
+|+++++|+ +|.|++.|.| .+.+.+.|++.++||+||.||||||+|||.++||.|+|+||||.+..||.. +
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~ 82 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHV 82 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccccc
Confidence 678888886 6999999999 444489999999999999999999999999999999999999999999875 2
Q ss_pred --CcceeecCc--------------eeEeeeeceeeEEecC
Q 023921 241 --CFSVFLCST--------------YYFSFICVHESVVDEM 265 (275)
Q Consensus 241 --~g~l~~~~~--------------~~~~~~~gr~~vih~~ 265 (275)
+|++-..++ +....++||++|||+.
T Consensus 83 gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~ 123 (154)
T KOG0441|consen 83 GDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAG 123 (154)
T ss_pred ccccccccCCCceEEEEEccceEEEeeccccceeEEEEecc
Confidence 444433322 1124568999999875
No 9
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=99.81 E-value=1.1e-19 Score=150.78 Aligned_cols=96 Identities=29% Similarity=0.395 Sum_probs=77.6
Q ss_pred eeeeec--CCceeeEEEEeeecCc-cEEEEEEecCCCCCccceEEcccCCC-CCCccccCCCcCCCCCCCCCC-----CC
Q 023921 171 AVAEFK--GPDVFGVVRLAQVNME-LARIEANFSGLSPGKHGWSINEFGDL-TKGAVSTGRVYNPKIEGSAKE-----VC 241 (275)
Q Consensus 171 Ava~~~--G~~v~G~v~~~q~~~~-~~~v~~~i~GL~~g~hg~HIHe~Gd~-~~g~~saGgh~np~~~~hg~~-----~~ 241 (275)
|+|.|+ +..|.|+|+|+|..++ ++.|+++++||++|.|+|||||+|+| +++|.++|+||||.+..|+.. ..
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 688898 4579999999999854 59999999999999999999999999 778999999999999988743 23
Q ss_pred cc---eeecC-----------ceeEe---eeeceeeEEecCC
Q 023921 242 FS---VFLCS-----------TYYFS---FICVHESVVDEMG 266 (275)
Q Consensus 242 g~---l~~~~-----------~~~~~---~~~gr~~vih~~G 266 (275)
|| ++.+. .+.++ +++||++|||...
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~ 122 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGP 122 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSS
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCC
Confidence 44 34432 34455 7889999998763
No 10
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.5e-19 Score=153.45 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=73.2
Q ss_pred ceeeEEEEeeecCccEEEEEEecCCCCCccceEEcccCCCCC------CccccCCCcCCC-CCCCCCC-----CCcc---
Q 023921 179 DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTK------GAVSTGRVYNPK-IEGSAKE-----VCFS--- 243 (275)
Q Consensus 179 ~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe~Gd~~~------g~~saGgh~np~-~~~hg~~-----~~g~--- 243 (275)
+..|+|++++.+. +++++..+.||+||+|||||||+|+|.. .|.||||||||. .++||.. +.||
T Consensus 41 ~~vG~vt~~e~~~-g~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~~~~H~GDLP~ 119 (179)
T COG2032 41 KDVGTVTITETGY-GLLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNADGGHAGDLPN 119 (179)
T ss_pred ceeEEEEEeecCC-ceEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCCCCCCcCcCcc
Confidence 6889999999987 5999999999999999999999999987 399999999999 6689652 2455
Q ss_pred eeecCc-----------ee---EeeeeceeeEEecCC
Q 023921 244 VFLCST-----------YY---FSFICVHESVVDEMG 266 (275)
Q Consensus 244 l~~~~~-----------~~---~~~~~gr~~vih~~G 266 (275)
||++.+ ++ +.+++||++|||+.+
T Consensus 120 L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~ 156 (179)
T COG2032 120 LFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGG 156 (179)
T ss_pred eEECCCCcEEEEEecccceeccccccCCeEEEEEcCC
Confidence 788764 33 457889999999876
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.30 E-value=1.6e-11 Score=87.21 Aligned_cols=58 Identities=34% Similarity=0.682 Sum_probs=54.3
Q ss_pred EEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC---CHHHHHHHHHhcCCc
Q 023921 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS---PLKTMTEALEQTGRK 154 (275)
Q Consensus 97 ~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~---~~~~I~~aI~~~Gy~ 154 (275)
+|+| ||+|++|+.+|+++|.+++||.++.+|+.+++++|.++. ++++|.++|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 4889 999999999999999999999999999999999999874 469999999999995
No 12
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.21 E-value=9.5e-11 Score=86.30 Aligned_cols=64 Identities=31% Similarity=0.522 Sum_probs=57.9
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CCHHHHHHHHHhcCCceEEe
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~---~~~~~I~~aI~~~Gy~a~l~ 158 (275)
+..|.| ||+|.+|+.+|+++|++++||..+++|+..+++.|.++ .+.++|+++|++.||++..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 478999 99999999999999999999999999999987777765 48899999999999987654
No 13
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.57 E-value=4.4e-07 Score=66.99 Aligned_cols=64 Identities=34% Similarity=0.616 Sum_probs=57.5
Q ss_pred EEEEEecCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCCHHHHHHHHHhcC-CceEEe
Q 023921 95 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTG-RKARLV 158 (275)
Q Consensus 95 ~v~~~VGM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~~~~~I~~aI~~~G-y~a~l~ 158 (275)
...+.+.|+|.+|..+|++.|..++||.++.+|...++++|.+..++..+++.+++.+ .+...+
T Consensus 6 ~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 6 TVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred EEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 4567779999999999999999999999999999999999999999999999999877 555444
No 14
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.05 E-value=1.1e-05 Score=84.66 Aligned_cols=64 Identities=20% Similarity=0.457 Sum_probs=56.8
Q ss_pred eEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCCHHHHHHHHHhcCCceEEeC
Q 023921 94 LLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 94 ~~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
+++++.| ||+|++|+.+|+++|++++||..+++++. +.++....+.+.+.+++++.||+++...
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 3588999 99999999999999999999999999994 5566666788999999999999998754
No 15
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.91 E-value=2.9e-05 Score=79.81 Aligned_cols=62 Identities=26% Similarity=0.489 Sum_probs=56.3
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC---C-HHHHHHHHHhcCCceEE
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS---P-LKTMTEALEQTGRKARL 157 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~---~-~~~I~~aI~~~Gy~a~l 157 (275)
+..|.+ ||+|..|+.+|| +|++++||..+.||+.++++.|.++. . .+++...+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 467999 999999999999 99999999999999999999998763 3 68899999999998764
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.59 E-value=0.0008 Score=44.51 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=51.4
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CCHHHHHHHHHhcCCce
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKA 155 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~---~~~~~I~~aI~~~Gy~a 155 (275)
+..+.+ ||.|..|...+++.+...+++....+++....+.+.++ .....+...++..||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 456899 99999999999999999999999999999999888864 35666777778888753
No 17
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00032 Score=72.76 Aligned_cols=69 Identities=25% Similarity=0.395 Sum_probs=63.3
Q ss_pred eEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CCHHHHHHHHHhcCCceEEeCCCC
Q 023921 94 LLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVGQGV 162 (275)
Q Consensus 94 ~~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~---~~~~~I~~aI~~~Gy~a~l~~~g~ 162 (275)
.++.|.| ||.|.+|+.+|++.|++++||+++++++..+++.|.++ ..+.++.+.|+..||++.....+.
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~~~ 218 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPYGD 218 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeeccc
Confidence 4688999 99999999999999999999999999999999999887 578999999999999988877553
No 18
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00046 Score=71.67 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=62.5
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CCHHHHHHHHHhcCCceEEeCCCC
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVGQGV 162 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~---~~~~~I~~aI~~~Gy~a~l~~~g~ 162 (275)
+-.+.+ ||+|..|+..|++.|++.+|+.++.+.+...+..+.++ .+++.+.+.+++.||.+.++....
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~ 141 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVN 141 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhccc
Confidence 467999 99999999999999999999999999999999999987 478999999999999999887654
No 19
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.74 E-value=0.0047 Score=64.98 Aligned_cols=65 Identities=28% Similarity=0.559 Sum_probs=57.2
Q ss_pred eEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCCCHHHHHHHHHhcCCceEEe
Q 023921 94 LLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 94 ~~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~l~ 158 (275)
.++.+.+ ||+|..|...+++.+.+.+||..+++++..++..+....+++++.+.+++.||.+.+.
T Consensus 99 ~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~ 164 (834)
T PRK10671 99 DSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164 (834)
T ss_pred ceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence 3577889 9999999999999999999999999999999888876567788888899999987654
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.72 E-value=0.0083 Score=62.41 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=55.4
Q ss_pred ceEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC-CHHHHHHHHHhcCCceEEe
Q 023921 93 ELLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS-PLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 93 ~~~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~-~~~~I~~aI~~~Gy~a~l~ 158 (275)
..+..+.+ ||+|.+|..++++.+.+.+||..+.+++..+++.+.++. ..+++.+.+++.||++...
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE 119 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence 44677889 999999999999999999999999999999998887642 2266778888999987543
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.90 E-value=1.7 Score=31.22 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=47.0
Q ss_pred EEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC---CCHHHHHHHHHhcCCceEE
Q 023921 96 TEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARL 157 (275)
Q Consensus 96 v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~---~~~~~I~~aI~~~Gy~a~l 157 (275)
..+.+ ++.|..|...++..+...+++....++.......+..+ .....+...+++.||..++
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 45668 99999999999999999999888888888877666532 2455555666777877543
No 22
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=87.34 E-value=2.6 Score=30.01 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=40.1
Q ss_pred EEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEeC
Q 023921 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 97 ~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
++.+ |+.|+...-.++++|++++. ++.+.|..+ ...+.|...++..||+.....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 5788 99999999999999999842 344555544 345789999999999865543
No 23
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=87.25 E-value=4.2 Score=23.70 Aligned_cols=55 Identities=33% Similarity=0.597 Sum_probs=37.4
Q ss_pred Ee-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeCC--CHHHHHHHHHhcCC
Q 023921 99 MV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS--PLKTMTEALEQTGR 153 (275)
Q Consensus 99 ~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~~--~~~~I~~aI~~~Gy 153 (275)
.+ ++.|..|...++..+...+++.....++......+.+.. ....+...+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGY 60 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 45 889999999999998888888777777776665555432 33444334444443
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=84.20 E-value=5.9 Score=39.53 Aligned_cols=64 Identities=23% Similarity=0.451 Sum_probs=49.9
Q ss_pred EEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEeCC
Q 023921 97 EYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVGQ 160 (275)
Q Consensus 97 ~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~~~ 160 (275)
.+.+ +|.|..|..+++..+...+++....+++......+.+. .....+...+++.||..+....
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence 4668 99999999999999999999998899988888766643 3455666667778877665554
No 25
>PRK11018 hypothetical protein; Provisional
Probab=76.55 E-value=15 Score=27.15 Aligned_cols=54 Identities=7% Similarity=0.130 Sum_probs=41.3
Q ss_pred EEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEe
Q 023921 96 TEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 96 v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~ 158 (275)
+++.+ |+.|+.-.-+.+++|++++. .+.+.|..+ ...+.|...+++.||++...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 67888 99999999999999998852 233444433 45678888899999987644
No 26
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=68.84 E-value=21 Score=25.55 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=39.8
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEeC
Q 023921 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 98 ~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
+.+ |+.|+.-.-+.+++|++++. .+.+.|..+ ...+.|....+..||+.....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 567 99999999999999998852 333444433 356788889999999887544
No 27
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=68.03 E-value=17 Score=25.51 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=37.2
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEeC
Q 023921 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 98 ~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
+.+ |+.|+.-.-..+++| +++. .+.+.|..+ ...+.|....++.||......
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~ 56 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVEE 56 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence 456 999999999999999 5532 223444433 345788889999999985444
No 28
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.24 E-value=48 Score=25.64 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=41.1
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcC-------CcEEEEEe-CCCHHHHHHHHHhcCCceEEe
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLS-------NQVVRILG-SSPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~-------~~~v~V~~-~~~~~~I~~aI~~~Gy~a~l~ 158 (275)
++.+.+ --+-.--.-.+-+.|.+++||..|++.+. +-+++|++ +.+.++|.+.|++.|.-.+-+
T Consensus 7 RlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 7 RLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred eeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 344555 33333334456677888888877664332 33456665 479999999999999765543
No 29
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=65.01 E-value=31 Score=24.53 Aligned_cols=53 Identities=11% Similarity=0.198 Sum_probs=39.3
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEeC
Q 023921 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 98 ~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
+.. |..|+.=.-..+++|++++- .+.+.|..+ ...+.|....++.||+.....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDPSTTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCCchHHHHHHHHHHcCCEEEEEE
Confidence 456 89999999999999998852 223344433 466789999999999987544
No 30
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=64.65 E-value=35 Score=23.77 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=39.2
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEeC
Q 023921 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 98 ~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
+.. |+.|+.=...++++|++++. .+.+.|..+ .....|...+++.||+.....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 456 89999999999999998752 334444443 357789999999999865443
No 31
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=63.65 E-value=30 Score=24.67 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=38.9
Q ss_pred EEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEe
Q 023921 98 YMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 98 ~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~ 158 (275)
+.. |..|+.=.-+.+++|++++. .+.+.|..+ ...+.|....+..||++...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 456 89999999999999999852 233444433 46678888899999988654
No 32
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=61.56 E-value=50 Score=24.42 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=40.7
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcCCceEEe
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~Gy~a~l~ 158 (275)
.+++.. |+.|+.=.-..+++|++++. .+.+.|..+ ...+.|....+..|++....
T Consensus 9 ~~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 9 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPSFCRFMDHELLAQ 66 (81)
T ss_pred CeEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 366888 99999999999999999852 233444433 35667888889999987644
No 33
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=55.95 E-value=45 Score=25.92 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=39.8
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEc-----CCcE--EEEEeC-CCHHHHHHHHHhcCCceEEe
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDL-----SNQV--VRILGS-SPLKTMTEALEQTGRKARLV 158 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl-----~~~~--v~V~~~-~~~~~I~~aI~~~Gy~a~l~ 158 (275)
++.|.| -.+-+ -.-.+-+.|.+++||..+++.+ .... ++|+++ .+.+++.++|++.|-..+-+
T Consensus 6 RlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 6 RLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred EEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 345555 33222 3345678899999998887543 3333 445564 79999999999999765543
No 34
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=54.29 E-value=79 Score=23.37 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=39.1
Q ss_pred EEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEeC--CCHHHHHHHHHhcC-CceEEe
Q 023921 95 LTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTG-RKARLV 158 (275)
Q Consensus 95 ~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~~--~~~~~I~~aI~~~G-y~a~l~ 158 (275)
..++.+ |+.|+.-...++++|++++ .++.+.|..+ ...+.|....++.| +.....
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~---------~Ge~LeV~~ddp~~~~dIp~~~~~~~~~~ll~~ 63 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLK---------PGEILEVIADDPAAKEDIPAWAKKEGGHELLEV 63 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCC---------CCCEEEEEecCcchHHHHHHHHHHcCCcEEEEE
Confidence 357899 9999999999999999985 3444555543 34567777777454 655443
No 35
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=47.25 E-value=44 Score=26.04 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=29.5
Q ss_pred eeeEEEEeeecCc-cEEEEEEecCCCCCccceEEcccCCC
Q 023921 180 VFGVVRLAQVNME-LARIEANFSGLSPGKHGWSINEFGDL 218 (275)
Q Consensus 180 v~G~v~~~q~~~~-~~~v~~~i~GL~~g~hg~HIHe~Gd~ 218 (275)
-.|.+.|.-..++ .+.+.+.+.||....-.+|||. +..
T Consensus 20 a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~-~~~ 58 (119)
T PF07452_consen 20 ASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ-GAA 58 (119)
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc-CCC
Confidence 4678877766654 5888999999977789999998 443
No 36
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=42.83 E-value=44 Score=23.66 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEecCcChhh------HHHHHHHHhCCCCeeEEEE
Q 023921 95 LTEYMVDMKCEGC------VDAVKQKLQTVTGVKNVEV 126 (275)
Q Consensus 95 ~v~~~VGM~C~~C------~~~IekaL~~l~GV~~v~V 126 (275)
++.+.+.+.++.| ...|+++|..++||.+++|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3555554444444 4678889999999998875
No 37
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=36.12 E-value=86 Score=27.34 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=37.2
Q ss_pred cCcChhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEe--CCCHHHHHHHHHhcCCceEEeC
Q 023921 101 DMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG--SSPLKTMTEALEQTGRKARLVG 159 (275)
Q Consensus 101 GM~C~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~--~~~~~~I~~aI~~~Gy~a~l~~ 159 (275)
|+.|+.-+-+.+++|++++. .+.+.|.. ....+.|....+..||++....
T Consensus 5 Gl~CP~Pvi~tKkal~~l~~---------g~~L~VlvD~~~a~~nV~~~~~~~G~~v~~~e 56 (194)
T TIGR03527 5 GLACPQPVILTKKALDELGE---------EGVLTVIVDNEAAKENVSKFATSLGYEVEVEE 56 (194)
T ss_pred CCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 89999999999999998852 22233332 3456788888999999987644
No 38
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=29.67 E-value=1.1e+02 Score=26.24 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCcE-------------------EEEEeC---CCHHHHHHHHH
Q 023921 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQV-------------------VRILGS---SPLKTMTEALE 149 (275)
Q Consensus 105 ~~C~~~IekaL~~l~GV~~v~Vdl~~~~-------------------v~V~~~---~~~~~I~~aI~ 149 (275)
.+|-.-+|..+.+++||.++.+-..++. |.|.+| ++.++|++..=
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 4566677888999999999998877664 667776 46777777653
No 39
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=28.41 E-value=1.6e+02 Score=22.91 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=26.9
Q ss_pred ceeeEEEEeeecCccEEEEEEecCCCCCccceEEcc
Q 023921 179 DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINE 214 (275)
Q Consensus 179 ~v~G~v~~~q~~~~~~~v~~~i~GL~~g~hg~HIHe 214 (275)
...|.+.|.-..+..+...+.+.||..-.-..|||+
T Consensus 19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 356777777664456888899999975333899998
No 40
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=25.32 E-value=54 Score=25.95 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=17.0
Q ss_pred cEEEEEEecCCCCCccceEEcc
Q 023921 193 LARIEANFSGLSPGKHGWSINE 214 (275)
Q Consensus 193 ~~~v~~~i~GL~~g~hg~HIHe 214 (275)
+-.+++.+.+.....|.||+|-
T Consensus 41 g~~v~~~l~N~~~~~Hp~HlHG 62 (138)
T PF07731_consen 41 GDVVEIVLQNNGSMPHPFHLHG 62 (138)
T ss_dssp TSEEEEEEEECTTSSEEEEETT
T ss_pred CCEEEEEEECCCCCccceEEEe
Confidence 3567777777767789999995
No 41
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=24.85 E-value=1.7e+02 Score=24.69 Aligned_cols=51 Identities=29% Similarity=0.391 Sum_probs=35.2
Q ss_pred EeCCCHHHHHHHHHhcCCceEEeCCCCCccccccceeeeecCCceeeEEEEeeecCccEEEEEEec
Q 023921 136 LGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGPDVFGVVRLAQVNMELARIEANFS 201 (275)
Q Consensus 136 ~~~~~~~~I~~aI~~~Gy~a~l~~~g~~~~~~~~~Ava~~~G~~v~G~v~~~q~~~~~~~v~~~i~ 201 (275)
.+++...++.+.+.+.|+.+++.+.|.- + +.|.|.+.....|.+.|++.+.
T Consensus 97 iGd~rL~~lk~~L~~~g~~aEF~g~G~L--------v-------~~~~V~VrK~~~G~i~ieG~~~ 147 (161)
T PF13299_consen 97 IGDLRLSDLKQALQSAGIQAEFRGEGVL--------V-------CNGGVAVRKSEDGRIVIEGCLS 147 (161)
T ss_pred cCcccHHHHHHHHHHCCCceEEeeCCeE--------E-------ECCEEEEEEcCCCCEEEEecCc
Confidence 3677889999999999999999965421 1 2334555555555677777554
No 42
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=22.95 E-value=2.9e+02 Score=19.72 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=32.3
Q ss_pred HhCCCCeeEEEEEcCCcEEEEE--eCCCHHHHHHHHHhcCCceEEeCCCCC
Q 023921 115 LQTVTGVKNVEVDLSNQVVRIL--GSSPLKTMTEALEQTGRKARLVGQGVP 163 (275)
Q Consensus 115 L~~l~GV~~v~Vdl~~~~v~V~--~~~~~~~I~~aI~~~Gy~a~l~~~g~~ 163 (275)
|+.+++|..+... .++.+.+. ......+|++.+.+.|+ +.-...-.|
T Consensus 26 l~~~~~v~~v~~~-~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~P 74 (84)
T PF13732_consen 26 LEELPGVESVEQD-GDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEEP 74 (84)
T ss_pred HhhCCCeEEEEEe-CCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcCC
Confidence 7788999988764 34434444 44567889999999998 665544333
No 43
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=22.16 E-value=1.8e+02 Score=25.94 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCc-------------------EEEEEeC---CCHHHHHHHH
Q 023921 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQ-------------------VVRILGS---SPLKTMTEAL 148 (275)
Q Consensus 105 ~~C~~~IekaL~~l~GV~~v~Vdl~~~-------------------~v~V~~~---~~~~~I~~aI 148 (275)
.+|-.-+|..+.+++||.++.+-..++ .|.|.+| ++.++|++..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~F 117 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVF 117 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 455666677788999999999988743 3667776 4677777765
No 44
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=20.79 E-value=2.6e+02 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHhCCCCeeEEEEEcCCcEEEEEe
Q 023921 105 EGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG 137 (275)
Q Consensus 105 ~~C~~~IekaL~~l~GV~~v~Vdl~~~~v~V~~ 137 (275)
..=+..|.+.+.+++||.++.|-.....+.|..
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav 106 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAV 106 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEE
Confidence 445789999999999999999999998887654
No 45
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=20.61 E-value=2.3e+02 Score=23.83 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=29.6
Q ss_pred eEEEEEe-cCcChhhHHHHHHHHhCCCCeeEEEEEcC-Cc
Q 023921 94 LLTEYMV-DMKCEGCVDAVKQKLQTVTGVKNVEVDLS-NQ 131 (275)
Q Consensus 94 ~~v~~~V-GM~C~~C~~~IekaL~~l~GV~~v~Vdl~-~~ 131 (275)
..+++.| .-.|..|..-|....+++ |+.++.|.-. ++
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG 138 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSG 138 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCC
Confidence 4577888 888999999999988876 7888877665 44
No 46
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=20.05 E-value=1.3e+02 Score=25.82 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCeeEEEEEc
Q 023921 108 VDAVKQKLQTVTGVKNVEVDL 128 (275)
Q Consensus 108 ~~~IekaL~~l~GV~~v~Vdl 128 (275)
...|+.+|.+++||.+++|++
T Consensus 133 ~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 133 VEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred HHHHHHHHHhCCCceeEEEEE
Confidence 355889999999999888864
Done!