BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023923
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 166 VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 223
V ++IP LK LVDD + IT +L LP NVD ILE Y +YR + +
Sbjct: 5 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGNTDNKEYAVN 64
Query: 224 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFV 274
E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV
Sbjct: 65 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFV 117
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 166 VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 223
V ++IP LK LVDD + IT +L LP NVD ILE Y +Y+ + +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65
Query: 224 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFV 274
E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV
Sbjct: 66 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFV 118
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 166 VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 223
V ++IP LK LVDD + IT +L LP NVD ILE Y +Y+ + +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65
Query: 224 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFV 274
E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV
Sbjct: 66 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFV 118
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 71/150 (47%), Gaps = 38/150 (25%)
Query: 163 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA--- 219
E + I+IP LKKQL DDC +I +LVKLP N+ ILE Y + + A
Sbjct: 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 220 -----------------------DSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA 256
D E+V GLR FD LP++LLY E+ QY+ ++
Sbjct: 65 PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 257 --DVSPSS----------VYGAEHLLRLFV 274
D+ P++ +YGA+HLLRLFV
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFV 154
>pdb|2EFI|A Chain A, Solution Structure Of The Chromo Domain Of Mortality
Factor 4-Like Protein 1 From Human
Length = 100
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 52 YQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111
+Q E+VL F +YEAK ++V + K+ + +HY GWNK+WDEWV R++K + N
Sbjct: 18 FQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNL 77
Query: 112 HRQPVFTKKRDE 123
+Q K E
Sbjct: 78 QKQRELQKANQE 89
>pdb|2F5K|A Chain A, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|B Chain B, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|C Chain C, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|D Chain D, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|E Chain E, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|F Chain F, Crystal Structure Of The Chromo Domain Of Human Mrg15
Length = 102
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 52 YQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111
+Q E+VL F +YEAK ++V + K+ + +HY GWNK+WDEWV R++K + N
Sbjct: 23 FQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNL 82
Query: 112 HRQPVFTKKRDE 123
+Q K E
Sbjct: 83 QKQRELQKANQE 94
>pdb|2LRQ|A Chain A, Chemical Shift Assignment And Solution Structure Of Fr822a
From Drosophila Melanogaster. Northeast Structural
Genomics Consortium Target Fr822a
Length = 85
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 46 TPASCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105
T A+ + E+VL F +YEAKV++ + + +HY GW+K+WDEWV +R++K
Sbjct: 7 TDANTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLK 66
Query: 106 DTEANRHRQ 114
+ N R+
Sbjct: 67 YNDDNVKRR 75
>pdb|3OB9|A Chain A, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|B Chain B, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|C Chain C, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|D Chain D, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|E Chain E, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
Length = 97
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 52 YQVNEKVLAF----FQSHV-YEAKVIQV-----QYRLKEWTFRVHYLGWNKSWDEWVGVH 101
+ EKVL F ++ V Y+AK++ V + K + +H+ GWN+SWD W
Sbjct: 15 FHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAED 74
Query: 102 RLMKDTEANRHRQPVFTKK 120
+++DT+ NR Q +K
Sbjct: 75 HVLRDTDENRRLQRKLARK 93
>pdb|3OA6|A Chain A, Human Msl3 Chromodomain Bound To Dna And H4k20me1 Peptide
pdb|3OA6|B Chain B, Human Msl3 Chromodomain Bound To Dna And H4k20me1 Peptide
Length = 110
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 52 YQVNEKVLAF----FQSHV-YEAKVIQV-----QYRLKEWTFRVHYLGWNKSWDEWVGVH 101
+ EKVL F ++ V Y+AK++ V + K + +H+ GWN+SWD W
Sbjct: 20 FHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAED 79
Query: 102 RLMKDTEANRHRQPVFTKK 120
+++DT+ NR Q +K
Sbjct: 80 HVLRDTDENRRLQRKLARK 98
>pdb|2K3Y|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain Bound To
Histone H3 With A Dimethyllysine Analog H3k36me2
Length = 136
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 82 TFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKNLKSGHA 132
+F +HY GW SWDEWVG R+ E N + KKR ++ +G A
Sbjct: 78 SFFIHYQGWKSSWDEWVGYDRIRAYNEEN-----IAMKKRLANEAGSTGSA 123
>pdb|3E9G|A Chain A, Crystal Structure Long-Form (Residue1-124) Of Eaf3 Chromo
Domain
pdb|3E9G|B Chain B, Crystal Structure Long-Form (Residue1-124) Of Eaf3 Chromo
Domain
Length = 130
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 83 FRVHYLGWNKSWDEWVGVHRLMKDTEAN 110
F +HY GW SWDEWVG R+ E N
Sbjct: 77 FFIHYQGWKSSWDEWVGYDRIRAYNEEN 104
>pdb|2K3X|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain
pdb|3E9F|A Chain A, Crystal Structure Short-Form (Residue1-113) Of Eaf3 Chromo
Domain
Length = 121
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 83 FRVHYLGWNKSWDEWVGVHRLMKDTEAN 110
F +HY GW SWDEWVG R+ E N
Sbjct: 77 FFIHYQGWKSSWDEWVGYDRIRAYNEEN 104
>pdb|3M9Q|A Chain A, Drosophila Msl3 Chromodomain
pdb|3M9Q|B Chain B, Drosophila Msl3 Chromodomain
Length = 101
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 66 VYEAKVIQV-----QYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQ 114
+Y +KV+ V ++ L+ + +++H+ GW S+D V L+KDTE NR Q
Sbjct: 39 LYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQ 92
>pdb|2LCC|A Chain A, Solution Structure Of Rbbp1 Chromobarrel Domain
Length = 76
Score = 37.0 bits (84), Expect = 0.011, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 66 VYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104
+YEA + + E + VHY GWN +DEWV R++
Sbjct: 24 IYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRII 62
>pdb|1WGS|A Chain A, Solution Structure Of The Tudor Domain From Mouse
Hypothetical Protein Homologous To Histone
Acetyltransferase
Length = 133
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 67 YEAKVIQVQYRLKEW--TFRVHYLGWNKSWDEWVGVHRL 103
+ A+VIQ + +E F VHY+G+N+ DEWV +RL
Sbjct: 29 HSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRL 67
>pdb|2RO0|A Chain A, Solution Structure Of The Knotted Tudor Domain Of The
Yeast Histone Acetyltransferase, Esa1
Length = 92
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109
A+++ + R F VHY+ +NK DEW+ R+ D E
Sbjct: 41 AEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRINLDKEV 81
>pdb|2RNZ|A Chain A, Solution Structure Of The Presumed Chromodomain Of The
Yeast Histone Acetyltransferase, Esa1
Length = 94
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109
A+++ + R F VHY+ +NK DEW+ R+ D E
Sbjct: 43 AEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRINLDKEV 83
>pdb|2BUD|A Chain A, The Solution Structure Of The Chromo Barrel Domain From
The Males-Absent On The First (Mof) Protein
Length = 92
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 83 FRVHYLGWNKSWDEWVGVHRLMKDTE 108
+ VHY+G N+ D WVG HR+ + +
Sbjct: 50 YYVHYVGLNRRLDGWVGRHRISDNAD 75
>pdb|3FEO|A Chain A, The Crystal Structure Of Mbtd1
pdb|3FEO|B Chain B, The Crystal Structure Of Mbtd1
Length = 437
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 69 AKVIQVQYRLKEWTFRVHYLGWNKSWDEWV 98
A V ++ +RL R+H+ GW + +D+WV
Sbjct: 383 ATVTRIIHRL----LRIHFDGWEEEYDQWV 408
>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
pdb|2DX7|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
Length = 228
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 184 FITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGL 229
F+ + K +K+P +++ +K + KK GL+A +TG IV G+
Sbjct: 88 FVEDIRKAIKIPIISMIEETAKKVKELGFKKAGLLA-TTGTIVSGV 132
>pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
pdb|1JFL|B Chain B, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
Length = 228
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 184 FITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGL 229
F+ + K +K+P +++ +K + KK GL+A +TG IV G+
Sbjct: 88 FVEDIRKAIKIPIISMIEETAKKVKELGFKKAGLLA-TTGTIVSGV 132
>pdb|2EKO|A Chain A, Solution Structure Of Ruh-073, A Pseudo Chromo Domain From
Human Cdna
Length = 87
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 83 FRVHYLGWNKSWDEWVGVHRL 103
F VHY+ +N+ DEWV RL
Sbjct: 46 FYVHYIDFNRRLDEWVTHERL 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,023,823
Number of Sequences: 62578
Number of extensions: 319918
Number of successful extensions: 661
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 28
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)