Query 023925
Match_columns 275
No_of_seqs 141 out of 1612
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 5.8E-39 1.2E-43 290.5 20.2 252 6-264 193-449 (449)
2 PTZ00206 amino acid transporte 100.0 9.6E-38 2.1E-42 291.9 16.7 206 55-265 256-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.7E-36 5.9E-41 276.6 19.5 254 4-267 177-437 (437)
4 PLN03074 auxin influx permease 100.0 3E-36 6.4E-41 281.4 18.5 216 51-275 229-462 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.3E-36 2.7E-41 280.1 2.1 209 50-262 187-409 (409)
6 KOG1305 Amino acid transporter 100.0 5.7E-31 1.2E-35 240.3 19.0 253 6-267 145-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.4E-32 5.2E-37 235.9 -1.6 262 5-273 251-523 (524)
8 COG0814 SdaC Amino acid permea 99.7 4.1E-16 8.8E-21 144.0 16.9 206 51-261 189-412 (415)
9 TIGR00837 araaP aromatic amino 99.2 5.3E-10 1.1E-14 102.4 17.8 171 52-232 175-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.1 2.5E-08 5.5E-13 91.8 20.7 195 50-254 179-392 (394)
11 PRK10483 tryptophan permease; 98.8 1E-06 2.2E-11 81.1 20.2 192 53-255 190-401 (414)
12 PRK15132 tyrosine transporter 98.8 5.5E-07 1.2E-11 82.9 17.8 190 56-255 182-390 (403)
13 PRK09664 tryptophan permease T 98.7 1.9E-06 4.1E-11 79.3 20.2 192 54-255 192-402 (415)
14 PRK13629 threonine/serine tran 98.5 3.9E-06 8.4E-11 77.6 15.5 203 55-258 209-440 (443)
15 TIGR00814 stp serine transport 98.5 8.3E-07 1.8E-11 81.8 10.5 196 53-250 184-396 (397)
16 PRK11021 putative transporter; 98.1 0.0017 3.6E-08 60.2 22.3 175 51-233 173-363 (410)
17 PRK10644 arginine:agmatin anti 97.8 0.0034 7.4E-08 58.8 20.2 58 53-115 189-246 (445)
18 PRK10746 putative transport pr 97.8 0.0051 1.1E-07 58.0 20.4 176 51-232 196-388 (461)
19 KOG1287 Amino acid transporter 97.8 0.003 6.5E-08 59.0 18.0 175 52-236 201-390 (479)
20 PRK10655 potE putrescine trans 97.8 0.013 2.8E-07 54.8 22.6 58 54-116 188-245 (438)
21 TIGR00909 2A0306 amino acid tr 97.7 0.0064 1.4E-07 56.5 20.0 172 51-231 191-375 (429)
22 PRK11357 frlA putative fructos 97.7 0.0048 1E-07 57.8 18.7 57 54-115 194-250 (445)
23 PF13520 AA_permease_2: Amino 97.7 0.0031 6.7E-08 58.5 16.9 173 51-233 184-376 (426)
24 TIGR00908 2A0305 ethanolamine 97.7 0.011 2.5E-07 55.2 20.6 58 51-113 187-244 (442)
25 PRK10238 aromatic amino acid t 97.6 0.021 4.6E-07 53.7 21.0 174 51-232 196-386 (456)
26 PRK10249 phenylalanine transpo 97.6 0.023 5.1E-07 53.5 21.1 173 51-231 205-394 (458)
27 TIGR00906 2A0303 cationic amin 97.5 0.019 4E-07 55.5 20.3 172 51-231 227-410 (557)
28 TIGR03813 put_Glu_GABA_T putat 97.5 0.014 3E-07 55.2 19.0 53 63-120 202-254 (474)
29 TIGR03810 arg_ornith_anti argi 97.5 0.014 3E-07 55.1 18.9 170 54-232 194-380 (468)
30 PRK10197 gamma-aminobutyrate t 97.4 0.0093 2E-07 56.0 16.8 173 51-231 177-367 (446)
31 TIGR00905 2A0302 transporter, 97.4 0.036 7.7E-07 52.4 20.2 58 53-116 197-254 (473)
32 PRK10836 lysine transporter; P 97.4 0.047 1E-06 51.8 20.8 60 53-117 203-262 (489)
33 PRK10435 cadB lysine/cadaverin 97.4 0.034 7.4E-07 51.9 19.4 60 52-116 184-243 (435)
34 PRK11387 S-methylmethionine tr 97.3 0.0069 1.5E-07 57.2 14.8 111 52-168 203-320 (471)
35 TIGR00913 2A0310 amino acid pe 97.3 0.082 1.8E-06 49.9 21.7 56 54-114 196-251 (478)
36 PRK11049 D-alanine/D-serine/gl 97.2 0.017 3.7E-07 54.5 16.1 176 51-232 207-399 (469)
37 PRK15049 L-asparagine permease 97.2 0.025 5.4E-07 53.9 16.4 174 51-232 216-406 (499)
38 TIGR00911 2A0308 L-type amino 97.2 0.059 1.3E-06 51.3 18.9 59 52-115 232-290 (501)
39 TIGR00907 2A0304 amino acid pe 97.1 0.1 2.2E-06 49.4 20.4 53 56-113 218-270 (482)
40 TIGR00910 2A0307_GadC glutamat 97.1 0.072 1.6E-06 50.9 19.4 52 57-113 196-247 (507)
41 TIGR01773 GABAperm gamma-amino 97.1 0.029 6.2E-07 52.7 15.8 60 51-115 197-256 (452)
42 PRK10580 proY putative proline 97.0 0.046 1E-06 51.4 16.1 59 51-114 195-253 (457)
43 COG0531 PotE Amino acid transp 96.9 0.24 5.2E-06 46.2 20.0 171 53-232 199-389 (466)
44 PRK15238 inner membrane transp 96.7 0.46 9.9E-06 45.2 20.4 56 55-115 211-266 (496)
45 TIGR00930 2a30 K-Cl cotranspor 96.6 0.45 9.8E-06 49.0 21.1 54 56-114 281-334 (953)
46 TIGR00912 2A0309 spore germina 96.1 0.13 2.9E-06 46.6 12.6 166 51-232 174-354 (359)
47 TIGR03428 ureacarb_perm permea 96.0 1.5 3.2E-05 41.5 23.6 61 55-120 213-273 (475)
48 COG1113 AnsP Gamma-aminobutyra 95.0 0.37 8E-06 44.9 11.4 175 50-232 198-389 (462)
49 KOG1286 Amino acid transporter 94.3 0.51 1.1E-05 45.6 11.0 174 51-231 228-422 (554)
50 PF00324 AA_permease: Amino ac 94.2 0.16 3.6E-06 47.9 7.6 64 53-121 198-261 (478)
51 COG1457 CodB Purine-cytosine p 93.5 6.7 0.00015 36.8 18.1 160 51-224 189-354 (442)
52 TIGR00800 ncs1 NCS1 nucleoside 92.0 7.9 0.00017 36.3 15.1 158 51-221 203-378 (442)
53 PF03845 Spore_permease: Spore 91.5 4.5 9.7E-05 36.0 12.4 116 50-171 170-295 (320)
54 COG0833 LysP Amino acid transp 90.6 13 0.00027 35.7 14.5 175 50-231 229-427 (541)
55 PRK11375 allantoin permease; P 83.2 43 0.00093 31.9 17.0 154 54-221 226-392 (484)
56 KOG1289 Amino acid transporter 83.0 46 0.001 32.0 14.3 66 51-121 248-313 (550)
57 TIGR02358 thia_cytX probable h 79.6 51 0.0011 30.3 20.3 130 74-221 192-323 (386)
58 PRK10484 putative transporter; 74.6 83 0.0018 30.2 14.0 44 71-121 261-307 (523)
59 TIGR00796 livcs branched-chain 68.0 1E+02 0.0022 28.4 16.7 140 72-229 198-347 (378)
60 TIGR00813 sss transporter, SSS 62.6 1.1E+02 0.0024 28.1 11.0 33 86-120 230-265 (407)
61 COG1914 MntH Mn2+ and Fe2+ tra 59.0 1.6E+02 0.0034 27.6 13.6 56 177-232 323-378 (416)
62 PF05767 Pox_A14: Poxvirus vir 57.4 20 0.00044 25.6 3.8 59 58-123 14-72 (92)
63 COG1953 FUI1 Cytosine/uracil/t 56.9 1.9E+02 0.004 27.8 15.8 161 50-221 235-406 (497)
64 PRK12488 acetate permease; Pro 55.9 2E+02 0.0043 27.8 15.4 45 70-121 277-324 (549)
65 PHA02898 virion envelope prote 54.3 27 0.00058 24.9 4.0 64 57-127 13-76 (92)
66 PF05805 L6_membrane: L6 membr 53.7 48 0.001 27.5 6.1 65 202-266 43-117 (195)
67 PF02468 PsbN: Photosystem II 52.3 15 0.00033 22.4 2.2 27 96-122 4-30 (43)
68 PRK13183 psbN photosystem II r 49.1 16 0.00034 22.7 1.9 28 95-122 6-33 (46)
69 PRK15419 proline:sodium sympor 49.0 2.4E+02 0.0053 26.8 15.6 16 106-121 283-298 (502)
70 KOG4812 Golgi-associated prote 48.5 35 0.00075 29.2 4.5 79 187-269 161-255 (262)
71 CHL00020 psbN photosystem II p 47.5 14 0.00029 22.6 1.5 28 95-122 3-30 (43)
72 COG3949 Uncharacterized membra 47.4 2.2E+02 0.0048 25.8 13.7 21 207-227 318-338 (349)
73 TIGR02121 Na_Pro_sym sodium/pr 42.3 3E+02 0.0066 26.0 15.2 28 94-121 264-294 (487)
74 PHA02680 ORF090 IMV phosphoryl 41.9 78 0.0017 22.5 4.7 60 59-125 15-74 (91)
75 PF07954 DUF1689: Protein of u 41.7 68 0.0015 25.5 5.0 60 206-265 32-92 (152)
76 PHA03048 IMV membrane protein; 40.0 70 0.0015 22.9 4.3 59 59-126 15-74 (93)
77 KOG2082 K+/Cl- cotransporter K 39.7 3.7E+02 0.0079 27.5 10.5 174 84-264 435-634 (1075)
78 PRK09442 panF sodium/panthothe 39.1 3.4E+02 0.0073 25.6 15.9 35 85-121 263-300 (483)
79 TIGR02119 panF sodium/pantothe 38.1 3.5E+02 0.0075 25.4 13.1 23 93-115 268-290 (471)
80 COG3817 Predicted membrane pro 37.3 2.8E+02 0.0061 24.2 9.4 86 183-268 99-197 (313)
81 COG0591 PutP Na+/proline sympo 35.7 4E+02 0.0086 25.4 13.9 60 60-122 240-300 (493)
82 PF05525 Branch_AA_trans: Bran 31.8 4.4E+02 0.0096 24.8 14.0 117 99-229 230-353 (427)
83 PRK11017 codB cytosine permeas 31.6 4.2E+02 0.009 24.4 16.4 148 55-221 183-332 (404)
84 TIGR02711 symport_actP cation/ 30.8 5E+02 0.011 25.1 16.4 45 187-235 411-457 (549)
85 PF01102 Glycophorin_A: Glycop 30.0 1E+02 0.0023 23.5 4.2 28 242-269 65-92 (122)
86 TIGR00327 secE_euk_arch protei 25.5 85 0.0018 20.8 2.7 29 86-118 21-49 (61)
87 PTZ00206 amino acid transporte 25.0 94 0.002 29.4 4.0 21 99-119 293-313 (467)
88 TIGR02230 ATPase_gene1 F0F1-AT 24.9 2.7E+02 0.0059 20.4 5.5 22 240-261 75-96 (100)
89 cd08766 Cyt_b561_ACYB-1_like P 24.3 2.2E+02 0.0048 22.3 5.3 65 94-160 40-104 (144)
90 PRK09400 secE preprotein trans 24.3 91 0.002 20.6 2.7 29 86-118 25-53 (61)
91 PRK11026 ftsX cell division AB 23.5 3.5E+02 0.0077 24.0 7.2 27 242-268 280-306 (309)
92 TIGR03648 Na_symport_lg probab 22.7 7E+02 0.015 24.1 16.5 16 218-234 451-466 (552)
93 cd08763 Cyt_b561_CYB561 Verteb 21.8 2.3E+02 0.0049 22.2 4.9 30 234-263 36-65 (143)
94 PF00474 SSF: Sodium:solute sy 21.3 94 0.002 28.5 3.1 42 190-233 352-393 (406)
95 PRK10263 DNA translocase FtsK; 21.1 1.1E+03 0.024 25.8 13.6 22 97-118 25-46 (1355)
96 PF06847 Arc_PepC_II: Archaeal 20.3 50 0.0011 23.9 0.9 25 97-121 67-91 (93)
97 PF13253 DUF4044: Protein of u 20.2 1.9E+02 0.0042 16.8 3.1 8 232-239 4-11 (35)
98 PF08019 DUF1705: Domain of un 20.1 3.7E+02 0.008 21.0 6.0 17 217-233 74-90 (156)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-39 Score=290.47 Aligned_cols=252 Identities=18% Similarity=0.229 Sum_probs=215.2
Q ss_pred ccchhhhhHHHHHHHH-HHHHHHHHHHHhhcccccCcccccccCCCcchHhHHHHHHHHHHHHhhCCccccchhccCCcC
Q 023925 6 HQYIDALMLHNYCSGR-CSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST 84 (275)
Q Consensus 6 ~~~l~~L~~ls~~S~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~ 84 (275)
..++|+||+|+.+|+. -++..+++++..++...+..+. ++...-.++.+++..+|+.+|||++++++.|++++
T Consensus 193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~--~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~---- 266 (449)
T KOG1304|consen 193 LNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPT--SDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS---- 266 (449)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCc--cccccccchhhhHHHHHHHHHHhccceEEEehhhc----
Confidence 4689999999999963 3444444444333322221111 11222345899999999999999999999999997
Q ss_pred CCCCccccc-hhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHH
Q 023925 85 PEKPSKILM-WKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 163 (275)
Q Consensus 85 m~~p~~~~~-~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ 163 (275)
||+|+++.- .+++..++.+++++|+.+|.+||++|||++++.|+.|+|+ +|..+.+++++++.+..+||+|++|+.++
T Consensus 267 Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI 345 (449)
T KOG1304|consen 267 MKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEI 345 (449)
T ss_pred ccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHH
Confidence 999987642 2789999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC---CChHHH
Q 023925 164 LEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR---FSPKWI 240 (275)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~---~~~~~~ 240 (275)
+|+.+.++.+.+++++....+|+.+++++..+|..+|+++++++++||++++.+++++|++++++.++++. ..|+++
T Consensus 346 i~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~ 425 (449)
T KOG1304|consen 346 IEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLI 425 (449)
T ss_pred HHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHH
Confidence 99998777665556677889999999999999999999999999999999999999999999999987654 467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023925 241 INWASIFIGVFIMLASTIGGFRNI 264 (275)
Q Consensus 241 ~~~~~i~~g~~~~v~gt~~si~~i 264 (275)
.|.+++++|++.++.|||+|+.++
T Consensus 426 ~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 426 KNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=9.6e-38 Score=291.95 Aligned_cols=206 Identities=19% Similarity=0.227 Sum_probs=182.1
Q ss_pred hHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCC-CC
Q 023925 55 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL-KR 133 (275)
Q Consensus 55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~ 133 (275)
.+.+.++|+++|||.||.+.+|+++| ||||+.+++.+++..++.+++++|..+|++||++||+++++|++.|+ |.
T Consensus 256 ~~~~~algi~~faF~~h~~~~~i~~~----M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~ 331 (467)
T PTZ00206 256 NRAIEGLGVFIFAYVFQITAYEVYMD----MTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV 331 (467)
T ss_pred hHHHhhhhHHHhhhhhhhhhHHHHHh----hcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC
Confidence 46889999999999999999999997 89999899889999999999999999999999999999999999999 55
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhh
Q 023925 134 PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFG 213 (275)
Q Consensus 134 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~ 213 (275)
++....++++++.+.++.+||++.+|+|+.+++.+..+.+ +.+.+++...+..+++++.++|+.+|+++.+++++||++
T Consensus 332 ~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~ 410 (467)
T PTZ00206 332 NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSIS 410 (467)
T ss_pred CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHH
Confidence 6677778899999999999999999999999998743322 234466666777778888999999999999999999999
Q ss_pred hhhhHhhhhhHHHHHH---hCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925 214 FTPTSYFLPSIMWLVI---KKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIV 265 (275)
Q Consensus 214 ~~~l~filP~l~yl~~---~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii 265 (275)
++.++|++|+++|++. ++++..+++|+.+++++++|++..+.|||+|+++.+
T Consensus 411 ~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 411 GGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999984 233344556788999999999999999999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=276.57 Aligned_cols=254 Identities=41% Similarity=0.776 Sum_probs=215.5
Q ss_pred CCccchhhhhHHHHHH--HHHHHHHHHHHHHhhcccccC-cccccccCCCcchHhHH-HHHHHHHHHHhhCCccccchhc
Q 023925 4 PEHQYIDALMLHNYCS--GRCSYSTIAWAGSLSHGRIEN-VSYAYKHTSSADYMFRV-FNALGQISFAFAGHAVALEIQA 79 (275)
Q Consensus 4 ~~~~~l~~L~~ls~~S--~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~a~~~~~faf~~~~~~~~i~~ 79 (275)
++.+.+++++++|..+ ++..|+.+++.+++.++.... ++.+..+. +.... ++++|++.|+|++|.++||||+
T Consensus 177 s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~----~~~~~~f~a~g~iaFaf~gH~v~peIq~ 252 (437)
T KOG1303|consen 177 SQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL----GTIPTVFTALGIIAFAYGGHAVLPEIQH 252 (437)
T ss_pred HHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC----CCCcchhhhhhheeeeecCCeeeeehHh
Confidence 3444555555555555 356677777788887776552 22222111 11111 8999999999999999999999
Q ss_pred cCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhc
Q 023925 80 TIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMP 159 (275)
Q Consensus 80 ~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p 159 (275)
+ ||+|++ |+|++..++.+++.+|+.+++.||++|||+++++++.|++++.|....+++++.+|++.+|.+...|
T Consensus 253 t----Mk~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~p 326 (437)
T KOG1303|consen 253 T----MKSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQP 326 (437)
T ss_pred h----cCCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 6 899987 5699999999999999999999999999999999999997677899999999999999999999999
Q ss_pred HHHHHHHHhhhccC-CC-CCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCCh
Q 023925 160 VFHLLEGMMIKRMN-FP-PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP 237 (275)
Q Consensus 160 ~~~~l~~~~~~~~~-~~-~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~ 237 (275)
+.+.+|++...+.+ .+ +....|...|+.++..++++|+.+|+|+++++++||+...++++++|+++|++.+|.++...
T Consensus 327 l~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~ 406 (437)
T KOG1303|consen 327 LFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSP 406 (437)
T ss_pred hHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 99999999976544 12 35568999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 023925 238 KWIINWAS-IFIGVFIMLASTIGGFRNIVAD 267 (275)
Q Consensus 238 ~~~~~~~~-i~~g~~~~v~gt~~si~~ii~~ 267 (275)
+|+.++.+ +++|+++++....++++.++.+
T Consensus 407 ~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 407 KWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999 8999999999999999988753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3e-36 Score=281.35 Aligned_cols=216 Identities=24% Similarity=0.380 Sum_probs=186.4
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch--hHh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD--NVL 128 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~--~il 128 (275)
+.+...++.++++++|+|++|.++||+++| ||||++++ ++...+....++.|..+|+.||+.|||++++ +.+
T Consensus 229 ~~~~~~~f~~~~~i~faf~g~~v~~~I~~~----M~~P~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l 302 (473)
T PLN03074 229 PTKLVLYFTGATNILYTFGGHAVTVEIMHA----MWKPQKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAF 302 (473)
T ss_pred chhHHHHHHHHHHHHHHhcccccHHHHHHh----ccChhccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHH
Confidence 456778889999999999999999999997 99999887 8888899999999999999999999999764 567
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhh
Q 023925 129 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGF 208 (275)
Q Consensus 129 ~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l 208 (275)
.|+|.+.+ ..+++++++++++.+||++++|+.+.+|+....+ ..+....|+..|+.+++.++++|+.+|+|+++++|
T Consensus 303 ~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsL 379 (473)
T PLN03074 303 SLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSA 379 (473)
T ss_pred hcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 78886655 4689999999999999999999999999987542 23345678899999999999999999999999999
Q ss_pred hhhhhhhhhHhhhhhHHHHHHhCCC-------------CCChH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccc
Q 023925 209 FGGFGFTPTSYFLPSIMWLVIKKPK-------------RFSPK--WIINWASIFI-GVFIMLASTIGGFRNIVADASTYS 272 (275)
Q Consensus 209 ~Ga~~~~~l~filP~l~yl~~~~~~-------------~~~~~--~~~~~~~i~~-g~~~~v~gt~~si~~ii~~~~~~~ 272 (275)
+||++++.+++++|+++|++.++++ ..+|. .+.|++++++ |++..+.|||+|++++++++++|+
T Consensus 380 vGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~ 459 (473)
T PLN03074 380 VGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFG 459 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhh
Confidence 9999999999999999999876542 11232 3889999975 555578999999999999999999
Q ss_pred CCC
Q 023925 273 FYT 275 (275)
Q Consensus 273 ~f~ 275 (275)
.|+
T Consensus 460 ~f~ 462 (473)
T PLN03074 460 LFA 462 (473)
T ss_pred hhh
Confidence 874
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.3e-36 Score=280.09 Aligned_cols=209 Identities=31% Similarity=0.496 Sum_probs=188.9
Q ss_pred CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCcc-ccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHh
Q 023925 50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK-ILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVL 128 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~-~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il 128 (275)
+..++.+++.++|+++|||.||+++|++++| ||+|++ ++++++...++.+++++|..+|..||++||+++++|++
T Consensus 187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~----m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il 262 (409)
T PF01490_consen 187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSE----MKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNIL 262 (409)
T ss_pred ccchhhHHHHhhhhhhhhhhcccccceeeee----ccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhh
Confidence 3567789999999999999999999999997 899998 67889999999999999999999999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhc--------cCCCCCcceeehhhHHHHHHHHHHHhhcC
Q 023925 129 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFP 200 (275)
Q Consensus 129 ~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~--------~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp 200 (275)
.|++++++...++++++.++++.+||++.+|.++.+|+.+.++ .+.+.++++|...|+.++.+++++|+.+|
T Consensus 263 ~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp 342 (409)
T PF01490_consen 263 LNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVP 342 (409)
T ss_pred hcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhcc
Confidence 9999887788899999999999999999999999999999763 12334568899999999999999999999
Q ss_pred ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 023925 201 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFIGVFIMLASTIGGFR 262 (275)
Q Consensus 201 ~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~-----~~~~~~i~~g~~~~v~gt~~si~ 262 (275)
+++++++++||++++.++|++|+++|+|.+++++.+.++ ..++..+++|++.++.|||++++
T Consensus 343 ~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 409 (409)
T PF01490_consen 343 NFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSIQ 409 (409)
T ss_pred chhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHcC
Confidence 999999999999999999999999999998877644333 44788999999999999998863
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.97 E-value=5.7e-31 Score=240.28 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=207.0
Q ss_pred ccchhhhhHHHHHHHH-HHHHHHHHHH-Hhhccc-ccCcccccccCCCcchHhHHHHHHHHHHHHhhCCccccchhccCC
Q 023925 6 HQYIDALMLHNYCSGR-CSYSTIAWAG-SLSHGR-IENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIP 82 (275)
Q Consensus 6 ~~~l~~L~~ls~~S~~-~~~~~i~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~ 82 (275)
++.+++||+.|.+|.. .++..+.++. ...... .++..+. ......+.+.+.++|+++|||.||+|+.++++|
T Consensus 145 ~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E-- 219 (411)
T KOG1305|consen 145 LKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE-- 219 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeee--
Confidence 4456777777777753 3333333222 222111 0111111 112223378999999999999999999999997
Q ss_pred cCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHH------HHHHHHHHHHHHHHhhhhh
Q 023925 83 STPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL------IAAANLMVVVHVIGSYQVF 156 (275)
Q Consensus 83 ~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------~~i~~~~~~i~~~~s~pl~ 156 (275)
||||+++++.++...+...++++|..+|.+||++|||++++|++.++++.+-. ...++..+.++.+..+|+.
T Consensus 220 --l~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~ 297 (411)
T KOG1305|consen 220 --LKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIV 297 (411)
T ss_pred --eeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999854322 3578999999999999999
Q ss_pred hhcHHHHHHHHhhhccC--CCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC
Q 023925 157 AMPVFHLLEGMMIKRMN--FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 234 (275)
Q Consensus 157 ~~p~~~~l~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~ 234 (275)
.+|+|..+++.+.++.. .+.++.++..++..++..+.+.|+.+|+++++++++||+++..++|++|+++|++..|+
T Consensus 298 ~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~-- 375 (411)
T KOG1305|consen 298 LFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK-- 375 (411)
T ss_pred hchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--
Confidence 99999999999877643 23566788999999999999999999999999999999999999999999999999887
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023925 235 FSPKWIINWASIFIGVFIMLASTIGGFRNIVAD 267 (275)
Q Consensus 235 ~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii~~ 267 (275)
+++++...+...++|+...+.|++..+.++..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 376 KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556778889999999999999999999998765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-32 Score=235.89 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=220.6
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHH-HHHhhcccccCcccccccCCCcchHhHHHHHHHHHHHHhhCCccccchhccCCc
Q 023925 5 EHQYIDALMLHNYCSGRCSYSTIAW-AGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS 83 (275)
Q Consensus 5 ~~~~l~~L~~ls~~S~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~ 83 (275)
+-.++||||.+|.+|..++.+=+++ .+.+.+..+...|+++...+..-+..+++.++|+++|+|+.|..+|+++.+
T Consensus 251 pc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN--- 327 (524)
T KOG4303|consen 251 PCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN--- 327 (524)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc---
Confidence 4468999999999998776652222 223323223334555544445667788899999999999999999999996
Q ss_pred CCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHH
Q 023925 84 TPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL 163 (275)
Q Consensus 84 ~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ 163 (275)
|+||++++ ..+.|+-+...++-..+|..||++|||+++..|++|+|.... ..++++...+..+.+||+-++.+.+.
T Consensus 328 -M~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsf-k~~VN~fLV~KALLSYPLPfyAAvel 403 (524)
T KOG4303|consen 328 -MKNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSF-KILVNLFLVVKALLSYPLPFYAAVEL 403 (524)
T ss_pred -cCChhHhe--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccch-hhhhhHHHHHHHHHcCCchHHHHHHH
Confidence 99999998 788899999999999999999999999999999999997554 45899999999999999999999999
Q ss_pred HHHHhhhccC---CC-------CCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925 164 LEGMMIKRMN---FP-------PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 164 l~~~~~~~~~---~~-------~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~ 233 (275)
+|+-++.+.+ ++ +-+-..+.+|..+++.+.+.|+.+|+|..+++++|+++++.++|+.|++||++++++.
T Consensus 404 Le~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~ 483 (524)
T KOG4303|consen 404 LENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT 483 (524)
T ss_pred HHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Confidence 9988876432 11 1123346889999999999999999999999999999999999999999999999887
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 023925 234 RFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSF 273 (275)
Q Consensus 234 ~~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii~~~~~~~~ 273 (275)
....|+..++.+++.|..++|.|.|.|..++++++++...
T Consensus 484 L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 484 LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 7777888999999999999999999999999999987644
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.71 E-value=4.1e-16 Score=144.00 Aligned_cols=206 Identities=16% Similarity=0.204 Sum_probs=155.1
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhC
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMA 130 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~ 130 (275)
+..+.+...++|++.|||+||+++|++++| ||++++++.+|+...+..+..++|..++.++|..+|+++.+|++++
T Consensus 189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~----~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~ 264 (415)
T COG0814 189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNY----MRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA 264 (415)
T ss_pred hhhHHHHHHHhhHHHhhhhCCccchHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHc
Confidence 467888999999999999999999999998 7888776677999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHH--------------HHHHhhhccCC--CCCcc--eeehhhHHHHHHH
Q 023925 131 LKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHL--------------LEGMMIKRMNF--PPGAA--VRVVARSAYVAFT 192 (275)
Q Consensus 131 ~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~--------------l~~~~~~~~~~--~~~~~--~~~~~r~~~~~~~ 192 (275)
.++++... ........+...++|.+.++.... .++.+.++++. ++..+ .........+...
T Consensus 265 ~~~~~~~l-~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~ 343 (415)
T COG0814 265 KEQNISLL-SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYP 343 (415)
T ss_pred cCchHHHH-HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence 97654433 344444445556667666665533 33333321111 11112 2234455555666
Q ss_pred HHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925 193 LFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGF 261 (275)
Q Consensus 193 ~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si 261 (275)
..++...|..+.+++.+|+.....+.++.|...+.|....++.+.++...++++++|+..++...++..
T Consensus 344 ~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 344 WGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999998888866555444335678899999988887666543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.24 E-value=5.3e-10 Score=102.45 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=129.5
Q ss_pred chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc-------
Q 023925 52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD------- 124 (275)
Q Consensus 52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~------- 124 (275)
.++.+...+++...++|++|.+++++.++ ++|+ +|+.+|+...+..+++++|...........+.+.-
T Consensus 175 ~~~~~~~~a~~~~~~~fg~~~~i~~~~~~----~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~ 249 (381)
T TIGR00837 175 SYWPYILSALPVCLTSFGFHGNVPSLYKY----YDGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKG 249 (381)
T ss_pred ccHHHHHHHHHHHHHHHHcccccHHHHHH----hccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence 46778889999999999999999999886 6655 56778999999999999999887655544433211
Q ss_pred ---hh---HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh
Q 023925 125 ---DN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT 198 (275)
Q Consensus 125 ---~~---il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~ 198 (275)
++ ...+.-.+.+...+....-.+.+..++.-.....+|.+.+.+.++++ +.+|.....+..+...++|..
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~----~~~~~~~~~~~~~~pl~~a~~ 325 (381)
T TIGR00837 250 GNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS----KKGRFKTGLLTFLPPLVFALF 325 (381)
T ss_pred CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----cCCCchhhhhhHHhHHHHHHH
Confidence 11 11111123345556777778889999999999999998888865322 223555667777888899999
Q ss_pred cCChh-hHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925 199 FPFFG-DLLGFFGGFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 199 vp~~~-~v~~l~Ga~~~~~l~filP~l~yl~~~~~ 232 (275)
.|+.. ..++..| +.+..+.+++|+++++|.||+
T Consensus 326 ~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 326 YPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99776 8999999 888999999999999998765
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.08 E-value=2.5e-08 Score=91.76 Aligned_cols=195 Identities=18% Similarity=0.266 Sum_probs=137.8
Q ss_pred CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh--HHH---------HH
Q 023925 50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL--IGY---------WA 118 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~--~gy---------~~ 118 (275)
.+.++...+.++|+..++|+.|.++|++.+.++ +|+ ++.+|++..+..+..++|+..-. .|- ..
T Consensus 179 ~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~--~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~ 253 (394)
T PF03222_consen 179 SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDP--KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIA 253 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 357889999999999999999999999999752 233 34458888888888888876532 221 11
Q ss_pred cCCCCch--hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHH
Q 023925 119 FGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVG 196 (275)
Q Consensus 119 fG~~~~~--~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A 196 (275)
-|+++.+ ..+.+..++.+......+.-.+.+.+||--...-++|.+++.+..++ +...|........+..+++|
T Consensus 254 ~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~----~~~~r~~~~~ltf~ppl~~a 329 (394)
T PF03222_consen 254 QGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN----NSSGRLKTWLLTFLPPLIFA 329 (394)
T ss_pred cCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccchHHHHHHHHHhHHHHH
Confidence 1222222 22333334445566778888889999999889999999999885521 22344455566667778889
Q ss_pred hhcC-ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCC-----hHHHHHHHHHHHHHHHHH
Q 023925 197 VTFP-FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS-----PKWIINWASIFIGVFIML 254 (275)
Q Consensus 197 i~vp-~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~-----~~~~~~~~~i~~g~~~~v 254 (275)
...| .|-..+++.| .....+..++|+++.+|.|++++.. ..+....+++++|++..+
T Consensus 330 ~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~iii 392 (394)
T PF03222_consen 330 LLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILIII 392 (394)
T ss_pred HHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHHH
Confidence 9998 6778999999 8899999999999999998765432 234555566666665543
No 11
>PRK10483 tryptophan permease; Provisional
Probab=98.80 E-value=1e-06 Score=81.11 Aligned_cols=192 Identities=16% Similarity=0.075 Sum_probs=132.2
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHH-----------HcCC
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW-----------AFGQ 121 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~-----------~fG~ 121 (275)
.+.....++|++.++|+.|.++|++.+.++ +|++ +.+|++..+..+..++|+.-=...-. .-|+
T Consensus 190 ~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ 264 (414)
T PRK10483 190 YAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGG 264 (414)
T ss_pred hHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 355688999999999999999999999742 2333 55699999999999998873222221 1233
Q ss_pred CCchhHhhCC---CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh
Q 023925 122 DVDDNVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT 198 (275)
Q Consensus 122 ~~~~~il~~~---~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~ 198 (275)
+++ ..+..+ .++.+...+......+.+..||--....+.|.+++.+..+++ ...|...-.+..+...++|..
T Consensus 265 ni~-~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~ 339 (414)
T PRK10483 265 NID-VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLL 339 (414)
T ss_pred ChH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHH
Confidence 332 111222 223344456667777888999998889999999998865432 234555556777888899999
Q ss_pred cCC-hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC-CCCCh----HHHHHHHHHHHHHHHHHH
Q 023925 199 FPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSP----KWIINWASIFIGVFIMLA 255 (275)
Q Consensus 199 vp~-~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~-~~~~~----~~~~~~~~i~~g~~~~v~ 255 (275)
.|+ |-..++..|.. +..+.-++|+++-+|.||+ +...+ .+....+.+.+|+...+.
T Consensus 340 ~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~ 401 (414)
T PRK10483 340 FPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALV 401 (414)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHH
Confidence 995 77899999977 6677789999999999875 22211 233335666666665554
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.78 E-value=5.5e-07 Score=82.93 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC----------ch
Q 023925 56 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----------DD 125 (275)
Q Consensus 56 ~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~----------~~ 125 (275)
-...++|++.++|+.|.++|++.+.+ + .+.++.+|++..+..+..++|+.-=......-+.+. -+
T Consensus 182 ~~~~~iPvl~~SFgfh~iIpsl~~y~----~-~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~ 256 (403)
T PRK15132 182 LALSAIPVIFTSFGFHGSVPSIVSYM----G-GNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLN 256 (403)
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHh----C-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchH
Confidence 48899999999999999999999973 3 233455689998888888888765544443322211 11
Q ss_pred hHhhCC---CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcC-C
Q 023925 126 NVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFP-F 201 (275)
Q Consensus 126 ~il~~~---~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp-~ 201 (275)
++++.+ .++.+...+......+.+..||--....+.|.+.+.+.++.+ ...|........+..+++|...| -
T Consensus 257 ~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~ 332 (403)
T PRK15132 257 GLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRG 332 (403)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHH
Confidence 223322 223455556777777888999998889999999998865322 23366667788888899999999 6
Q ss_pred hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC---CCC--hHHHHHHHHHHHHHHHHHH
Q 023925 202 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK---RFS--PKWIINWASIFIGVFIMLA 255 (275)
Q Consensus 202 ~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~---~~~--~~~~~~~~~i~~g~~~~v~ 255 (275)
|....++.|.. ...+.+++|+++-+|.++++ +.+ ..+..+++.+.+|++..+.
T Consensus 333 F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 333 FVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 77889998875 68899999999999998654 221 1456677788888777664
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.75 E-value=1.9e-06 Score=79.35 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=131.8
Q ss_pred HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhh--hhHH---------HHHcCCC
Q 023925 54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV--ALIG---------YWAFGQD 122 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~--g~~g---------y~~fG~~ 122 (275)
+.....++|++.++|+.|+++|++.+.++ +|+++. +|++.....+..++|..- ...| -..-|++
T Consensus 192 ~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~--~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~n 266 (415)
T PRK09664 192 FPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKL--IKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGN 266 (415)
T ss_pred HHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 34577899999999999999999999742 344333 377777777777777432 1222 1223334
Q ss_pred CchhHhh--CCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcC
Q 023925 123 VDDNVLM--ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFP 200 (275)
Q Consensus 123 ~~~~il~--~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp 200 (275)
+++-+.. +-..+.+......+...+.+..||--....+.|.+.+.+..+++ ...|...-.+..+...++|...|
T Consensus 267 v~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~----~~~r~~~~~ltflPPl~~al~~P 342 (415)
T PRK09664 267 VDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS----HGGRFKTVLLTFLPPALLYLIFP 342 (415)
T ss_pred chHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhhHHHHHHhh
Confidence 4332211 11234455666777778889999998889999999998855422 23455555677788889999999
Q ss_pred C-hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC-CCCC----hHHHHHHHHHHHHHHHHHH
Q 023925 201 F-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFS----PKWIINWASIFIGVFIMLA 255 (275)
Q Consensus 201 ~-~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~-~~~~----~~~~~~~~~i~~g~~~~v~ 255 (275)
+ |=..++..|.. +..+.-++|+++-+|.||+ +... ..+..-.+.+.+|++..+.
T Consensus 343 ~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 343 NGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence 5 77899999996 5688889999999999975 2211 2345556666777766654
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.53 E-value=3.9e-06 Score=77.58 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHhhCCccccchhccCCcCCC---CCc--cccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC------
Q 023925 55 FRVFNALGQISFAFAGHAVALEIQATIPSTPE---KPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQDV------ 123 (275)
Q Consensus 55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~---~p~--~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~------ 123 (275)
.....++|++.++|..|+.+|++....|.+.+ +++ +++.+|++..+..+..++|+..-..+-..-+++-
T Consensus 209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~ 288 (443)
T PRK13629 209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKA 288 (443)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45789999999999999999999887443332 233 4566788999999888888877666555544321
Q ss_pred -chhHh----hCCCC---C-----hHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhh---ccCC--CCCcceeehhh
Q 023925 124 -DDNVL----MALKR---P-----GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK---RMNF--PPGAAVRVVAR 185 (275)
Q Consensus 124 -~~~il----~~~~~---~-----~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~---~~~~--~~~~~~~~~~r 185 (275)
+.+++ +.++. . .+......+.-.+.+..||--....++|.++.+..+ +.+. ..++..+....
T Consensus 289 qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~ 368 (443)
T PRK13629 289 QNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISM 368 (443)
T ss_pred hCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHH
Confidence 11211 22222 1 223344555556788888888888999999988853 1111 12223355677
Q ss_pred HHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 023925 186 SAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTI 258 (275)
Q Consensus 186 ~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~ 258 (275)
..+.+.++++|..-|++=++++-+|+---..+.|++|...-.|...-++.+.+ ..|+++++.|++......|
T Consensus 369 ~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~-~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 369 IFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGR-LDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCC-chhHHHHHHHHHHHHHHHH
Confidence 78888999999999998888886666666778899999887777543333322 3578888888877654443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.50 E-value=8.3e-07 Score=81.76 Aligned_cols=196 Identities=12% Similarity=0.152 Sum_probs=130.1
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCc--cccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc-----h
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD-----D 125 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~--~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~-----~ 125 (275)
.+.+...++++..+||.+|+.+|++..+.|.+.+||+ ++|.+|+...+..+..++|+..-..+-...+.+.- +
T Consensus 184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ 263 (397)
T TIGR00814 184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ 263 (397)
T ss_pred hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence 4678999999999999999999999733222234333 45556888899998888888777766666554321 1
Q ss_pred --hHhh----CCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccC---C-CCCcceeehhhHHHHHHHHHH
Q 023925 126 --NVLM----ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN---F-PPGAAVRVVARSAYVAFTLFV 195 (275)
Q Consensus 126 --~il~----~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~---~-~~~~~~~~~~r~~~~~~~~~~ 195 (275)
+.+. ..+ +.+...+....-.+.+..||--....++|.+++.+.+..+ + ..++..+......+.+.++.+
T Consensus 264 nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 342 (397)
T TIGR00814 264 NISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIV 342 (397)
T ss_pred CcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHH
Confidence 1122 122 2233344555566788888888888999999998842211 1 112233446677788889999
Q ss_pred HhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCChHHHHHHHHHHHHH
Q 023925 196 GVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGV 250 (275)
Q Consensus 196 Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~~i~~g~ 250 (275)
|..-|++=++++-+|+---..+.|++|...-.|...-++.+.+ ..++++++.|+
T Consensus 343 ~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~-~~~~fv~~~g~ 396 (397)
T TIGR00814 343 AYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR-ISNVFVTVIGL 396 (397)
T ss_pred HHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-cchheeEeeec
Confidence 9999998888886666666678889999887777443333222 24666655553
No 16
>PRK11021 putative transporter; Provisional
Probab=98.07 E-value=0.0017 Score=60.19 Aligned_cols=175 Identities=13% Similarity=0.203 Sum_probs=96.5
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH--HHHHcCCCCc--h-
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI--GYWAFGQDVD--D- 125 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~--gy~~fG~~~~--~- 125 (275)
+.++.++..++....|+|.+.......-+| +|||+| +.+|++..+..++.++|...... +...++|..+ +
T Consensus 173 ~~~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~k-~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~ 247 (410)
T PRK11021 173 SIEWSGLFAALGVMFWCFVGIEAFAHLASE----FKNPER-DFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAAS 247 (410)
T ss_pred CccHHHHHHHHHHHHHHHhcHHHHHhhHHh----ccCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcccc
Confidence 356788999999999999999999999997 899985 67899999999999999988754 2222333211 1
Q ss_pred --hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeeh-hhHHHHHHHHHH
Q 023925 126 --NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVV-ARSAYVAFTLFV 195 (275)
Q Consensus 126 --~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~-~r~~~~~~~~~~ 195 (275)
.+.+..- +.+...+..+...+..+.+.........+.+..+-+++. + .+++.+.+.. +...+..+..++
T Consensus 248 ~~~~~~~~~-G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~ 326 (410)
T PRK11021 248 LPGIFVQLF-GGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILL 326 (410)
T ss_pred HHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHH
Confidence 1121111 111222333333444444443333333344333332110 0 0111122211 111111111112
Q ss_pred Hh-hcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925 196 GV-TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 196 Ai-~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~ 233 (275)
.. .-.+++++.++.. ....+.|.++.+..+|+++++
T Consensus 327 ~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 327 IYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 11 2357777777644 335688888888888887643
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.85 E-value=0.0034 Score=58.80 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=49.3
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 115 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g 115 (275)
++.++..++....|+|.|-......-+| +|||+| +.+|++..+..+..++|.+.....
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 189 TFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATIGGVLIAAVCYVLSSTAI 246 (445)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH----hhCccc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888899999999999888886 899976 578999999999999999887753
No 18
>PRK10746 putative transport protein YifK; Provisional
Probab=97.79 E-value=0.0051 Score=57.96 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=100.5
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-Cc---hh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD---DN 126 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~~---~~ 126 (275)
+.++.++..++....|+|.+-......-+| +|||+| +++|++..+.....++|.......-.....+ .. ++
T Consensus 196 ~~g~~g~~~~~~~~~faf~G~e~v~~~a~E----~knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp 270 (461)
T PRK10746 196 AGGWKGFLTALCIVVASYQGVELIGITAGE----AKNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSP 270 (461)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCc
Confidence 446788999999999999999988888886 899975 6789988888888888887654433333221 11 11
Q ss_pred H---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C------CCCCcceeeh-hhHHHHHHHHHH
Q 023925 127 V---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N------FPPGAAVRVV-ARSAYVAFTLFV 195 (275)
Q Consensus 127 i---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~------~~~~~~~~~~-~r~~~~~~~~~~ 195 (275)
. ..+...+ ....+.+....+..+.+..-..+...+.+..+-..+. + .++..+.+.. +......+...+
T Consensus 271 ~v~~~~~~g~~-~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~ 349 (461)
T PRK10746 271 FVLTFAKIGIT-AAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCL 349 (461)
T ss_pred HHHHHHHhCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1 1222211 2233455555566666655555656666555543221 0 0111121211 111111222223
Q ss_pred HhhcCChhhHHhhhhhhhh--hhhHhhhhhHHHHHHhCC
Q 023925 196 GVTFPFFGDLLGFFGGFGF--TPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 196 Ai~vp~~~~v~~l~Ga~~~--~~l~filP~l~yl~~~~~ 232 (275)
....|+-+.+++.+-+.++ ..+.++++++.|++.+|+
T Consensus 350 ~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 350 NYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345655665555444333 367899999999998764
No 19
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.77 E-value=0.003 Score=59.02 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=112.5
Q ss_pred chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCC
Q 023925 52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMAL 131 (275)
Q Consensus 52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~ 131 (275)
.+..++..++=.-.|||.+=.++=.+-+| +|||+| ++++++.+++.+++++|+.+=+..+-+- ..++++.+-
T Consensus 201 ~~~g~i~lafysglfa~~GWd~lN~vteE----iknP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~ 272 (479)
T KOG1287|consen 201 TDVGNIALAFYSGLFAFSGWDYLNYVTEE----IKNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSD 272 (479)
T ss_pred CchHHHHHHHHHhhhcccCchhhccchHh----hcCccc-cchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccc
Confidence 45566778888889999998888888886 799975 6899999999999999999866444221 223332221
Q ss_pred ---------CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCC----Ccceeehh--hHHHHHHHHHHH
Q 023925 132 ---------KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPP----GAAVRVVA--RSAYVAFTLFVG 196 (275)
Q Consensus 132 ---------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~----~~~~~~~~--r~~~~~~~~~~A 196 (275)
--+++. -.+-.+..++.+.+.--.++...+.+...-+++. .+. ...++..- .+.......++.
T Consensus 273 aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~-LP~~~s~i~~~~~TP~~allf~~~~~i~~ 350 (479)
T KOG1287|consen 273 AVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGH-LPAFFSMISVRRFTPRPALLFSGLLSIVL 350 (479)
T ss_pred hHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccC-ccHHHHhhcCCCCCChHHHHHHHHHHHHH
Confidence 012233 2344555666666666555555555554444332 110 01112122 233334444555
Q ss_pred hhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCCC
Q 023925 197 VTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS 236 (275)
Q Consensus 197 i~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~~ 236 (275)
....|++.+++..+=.......+.+=+++|+|.++++..+
T Consensus 351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 5667899999999888888888888999999999887544
No 20
>PRK10655 potE putrescine transporter; Provisional
Probab=97.77 E-value=0.013 Score=54.78 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH
Q 023925 54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 116 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy 116 (275)
+.++..++....|+|.|-.....+-+| +|||+| +.+|++..+..+..++|.+......
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDA----VENPER-NVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHH----hhCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999999988886 899976 5789999999999999988765443
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=97.74 E-value=0.0064 Score=56.53 Aligned_cols=172 Identities=14% Similarity=0.028 Sum_probs=98.1
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-C---ch-
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DD- 125 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~---~~- 125 (275)
+.+..++..++....++|.+........+| +|||+| +.+|++..+..+..++|..........-+.+ . ++
T Consensus 191 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E----~~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~ 265 (429)
T TIGR00909 191 PMGFGGVGAATALVFFAFIGFEAISTAAEE----VKNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAP 265 (429)
T ss_pred CCcHHHHHHHHHHHHHHHhhHHHHHhhHHh----ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcH
Confidence 445678889999999999999999998887 799864 5679999999999999998876544222111 0 11
Q ss_pred --hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCC-----CcceeehhhHHHHH-HHHHHHh
Q 023925 126 --NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPP-----GAAVRVVARSAYVA-FTLFVGV 197 (275)
Q Consensus 126 --~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~-----~~~~~~~~r~~~~~-~~~~~Ai 197 (275)
.+..+.. .++...+..+...+..+.+.--......+.+..+-..+. .++ +...+.-.+..++. ....+..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~-lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~ 343 (429)
T TIGR00909 266 LSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGL-LPGSLSKVHPKTGTPHMSIIIFSLTAALLA 343 (429)
T ss_pred HHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CcHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence 1112222 234444566666677767666655555555554443221 110 00112222211111 1111122
Q ss_pred hcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 198 TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 198 ~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
...+++.+.++.+- +..+.|++.++.+++.++
T Consensus 344 ~~~~~~~l~~~~~~--~~~~~y~~~~~a~~~lr~ 375 (429)
T TIGR00909 344 SLVPLEGLAELTSI--GTLIAFAAVNVAVIILRR 375 (429)
T ss_pred HHcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 34567777765432 335667777666666654
No 22
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.70 E-value=0.0048 Score=57.79 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925 54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 115 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g 115 (275)
+.++..++....|+|.+-.....+-+| +|||+| +.+|++..+..++.++|.......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGE----IKNPGK-TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHH----hcCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999887 899975 678999999999999998876543
No 23
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.68 E-value=0.0031 Score=58.46 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=101.4
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc---hhH
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---DNV 127 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~---~~i 127 (275)
+..+.+++.+++...|+|.+-......-+| +|| |+.+|++..+..++.++|......-....+++.. ++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~ 256 (426)
T PF13520_consen 184 PSGWPGFLAGFSVAFFAFSGFEAIASLAEE----NKN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNS 256 (426)
T ss_dssp CSSSSHHHHHHHHHGGGGTTTTHHHHGGGG----SSS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCH
T ss_pred CccccchhhHHHHHHhhccccccccccccc----ccc---hhheeecccchhHHHHHHhhhhheeeecccchhhhccccc
Confidence 345556889999999999999999999997 665 4677999999999999999987765555544211 111
Q ss_pred -------hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C--CCCCcceeehhhHHHH--HHHHHH
Q 023925 128 -------LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N--FPPGAAVRVVARSAYV--AFTLFV 195 (275)
Q Consensus 128 -------l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~--~~~~~~~~~~~r~~~~--~~~~~~ 195 (275)
.+... +.+...+..++..+..+.+.........+.+..+-+++. + ..+..+++.-.+..+. +++.++
T Consensus 257 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~ 335 (426)
T PF13520_consen 257 PSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSIL 335 (426)
T ss_dssp HCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHH
T ss_pred ccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHH
Confidence 11111 124444556666677777777777777777766665432 1 1111112222222222 222122
Q ss_pred Hh---hcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925 196 GV---TFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 196 Ai---~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~ 233 (275)
.. ..| +++.+.+... ....+.++++.+.+++.++++
T Consensus 336 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 336 LLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp HHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHHS
T ss_pred HHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 21 123 4445555332 234567777777777776543
No 24
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.66 E-value=0.011 Score=55.17 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=47.0
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 113 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~ 113 (275)
+..+.++..++....|+|.|.......-+| +|||+| +.+|++..+..++..+|...-.
T Consensus 187 ~~~~~~~~~~~~~~~~af~G~e~~~~~aeE----~k~P~r-~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 187 PGAYVGVFAAIPFAIWFFLAVEGVAMAAEE----TKNPKR-DIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCccc-ccCHHHHHHHHHHHHHHHHHHH
Confidence 334567888999999999999999888886 899976 5679999998888888876643
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.57 E-value=0.021 Score=53.70 Aligned_cols=174 Identities=15% Similarity=0.195 Sum_probs=91.5
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH--HHcCCC--Cchh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY--WAFGQD--VDDN 126 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy--~~fG~~--~~~~ 126 (275)
+..+.++..+++...|+|.|-......-+| +|||+| +.+|++..+.....+.|...-.... ..+.+- .+++
T Consensus 196 ~~g~~~~~~~~~~~~~af~G~e~~~~~aeE----~knP~r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP 270 (456)
T PRK10238 196 PHGFTGLVMMMAIIMFSFGGLELVGITAAE----ADNPEQ-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSP 270 (456)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHHHHHHHh----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCc
Confidence 445667888888999999999998888886 899976 5788887777777767765432211 112111 1111
Q ss_pred ---HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhHHHHHH-HHHH
Q 023925 127 ---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARSAYVAF-TLFV 195 (275)
Q Consensus 127 ---il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~~~~~~-~~~~ 195 (275)
+..+... .+...+.+....+..+.+..-..+...+.+..+-+.+. + .+++.+.+..+-...+.. ..++
T Consensus 271 ~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~ 349 (456)
T PRK10238 271 FVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLI 349 (456)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 1222222 23333445555555555555445555555544433211 0 011222222211111111 1111
Q ss_pred HhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925 196 GVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 196 Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~ 232 (275)
....| .++.+.++.+ .+..+.|.+|.+.+++.+|+
T Consensus 350 ~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 350 NYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 11223 3445555433 34568999999999998763
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=97.56 E-value=0.023 Score=53.46 Aligned_cols=173 Identities=15% Similarity=0.200 Sum_probs=94.2
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-C---chh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DDN 126 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~---~~~ 126 (275)
+.++.++..++....|+|.+-......-+| +|||+| +.+|++..+.....++|...........+++ . +++
T Consensus 205 ~~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~~~P~k-~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p 279 (458)
T PRK10249 205 ATGWNGLILSLAVIMFSFGGLELIGITAAE----ARDPEK-SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSP 279 (458)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCc
Confidence 456788899999999999999999888886 899986 6789999999888889977544433332221 1 111
Q ss_pred H---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeeh-hhHHHHHHHHHH
Q 023925 127 V---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVV-ARSAYVAFTLFV 195 (275)
Q Consensus 127 i---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~-~r~~~~~~~~~~ 195 (275)
. ..+.. ..+...+......+..+.+..-......+.+..+-+.+. + .+++.+.+.. +..++..+..++
T Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~ 358 (458)
T PRK10249 280 FVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLI 358 (458)
T ss_pred HHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 12222 123333444444455555544444444444444332211 0 0111122211 111111111222
Q ss_pred HhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 196 GVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 196 Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
....| .++.+.++.+. ...+.|++|++.+++.+|
T Consensus 359 ~~~~~~~~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 359 NYLLPQKAFGLLMALVVA--TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHhChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 22223 23444443322 456889999999999874
No 27
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.52 E-value=0.019 Score=55.54 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=99.0
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC---CCchhH
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ---DVDDNV 127 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~---~~~~~i 127 (275)
|.++.+++.+.....|+|.|-......-+| .|||+| ++++++..+..+++++|..+...-...-+. +.++.+
T Consensus 227 p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE----~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~ 301 (557)
T TIGR00906 227 PYGFTGVLSGAATCFFAFIGFDAIATTGEE----VKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPF 301 (557)
T ss_pred CcchHHHHHHHHHHHHHHhhHHHHHHhHHh----ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHH
Confidence 445678999999999999999999888886 899976 678999999999999999887653322221 111222
Q ss_pred ---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C--C-CCCcceeehhhHHH--HHHHHHHHhh
Q 023925 128 ---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N--F-PPGAAVRVVARSAY--VAFTLFVGVT 198 (275)
Q Consensus 128 ---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~--~-~~~~~~~~~~r~~~--~~~~~~~Ai~ 198 (275)
..... .++...+..+........+.........+.+..+-..+. + . +.+.+.+.-.+..+ .+++.+++..
T Consensus 302 ~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~ 380 (557)
T TIGR00906 302 PVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL 380 (557)
T ss_pred HHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 22222 234444444555555555555555555555554443221 0 0 00101111122221 2222333333
Q ss_pred cCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 199 FPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 199 vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
.+++.+.++... +..+.|.+++...+.+++
T Consensus 381 -~~~~~l~~l~si--g~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 381 -FDLKALVDLLSI--GTLLAYSLVAACVLILRY 410 (557)
T ss_pred -cCHHHHHHHHHH--HHHHHHHHHHHHHHHhhc
Confidence 356666665422 346889999887777764
No 28
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.51 E-value=0.014 Score=55.16 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=41.4
Q ss_pred HHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcC
Q 023925 63 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 120 (275)
Q Consensus 63 ~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 120 (275)
.+.|+|.|-......-+| +|||+| +.+|++..+..++.++|......-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E----~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKD----VDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHh----ccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899999888888776 899976 57899999999999999876655443333
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.50 E-value=0.014 Score=55.10 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=94.4
Q ss_pred HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC----Cch----
Q 023925 54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD----VDD---- 125 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~----~~~---- 125 (275)
+.++..++....|+|.+-.....+-+| .|| +|+.+|++..+......+|..+....+...+++ .++
T Consensus 194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e----~k~--~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~ 267 (468)
T TIGR03810 194 MTQVKNMMLVTVWVFIGIEGASMLSAR----AEK--RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMA 267 (468)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHhh----ccC--cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHH
Confidence 456778888999999999888777665 665 467789999999999999998877655433321 111
Q ss_pred hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhHHHHHHHHHHHhh
Q 023925 126 NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARSAYVAFTLFVGVT 198 (275)
Q Consensus 126 ~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~~~~~~~~~~Ai~ 198 (275)
.+.++.- ..+...+..+...++.+.+.--......+....+-.++. + .+++.+.+...-...+.....+...
T Consensus 268 ~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~ 346 (468)
T TIGR03810 268 YVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTL 346 (468)
T ss_pred HHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1222221 234444556666666666665555555444443332211 0 0112222221111111111111111
Q ss_pred c--CChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925 199 F--PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 199 v--p~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~ 232 (275)
. +.++.+.++.+. ...+.|.++++.++|.+++
T Consensus 347 ~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 347 FSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred ccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 2 345555554433 3568899999999988654
No 30
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.45 E-value=0.0093 Score=55.95 Aligned_cols=173 Identities=15% Similarity=0.146 Sum_probs=100.9
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHH--cCCC-C--ch
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA--FGQD-V--DD 125 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~--fG~~-~--~~ 125 (275)
|..+.++..++....|+|.|-......-+| +|||+| +++|++..+.....++|......--.. +.+. . .+
T Consensus 177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~ 251 (446)
T PRK10197 177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAE----SDTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVG 251 (446)
T ss_pred cccHHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccC
Confidence 456778999999999999999999888886 899975 678998888888888998866553222 2220 0 01
Q ss_pred ---hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhH-HHHHHHHH
Q 023925 126 ---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARS-AYVAFTLF 194 (275)
Q Consensus 126 ---~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~-~~~~~~~~ 194 (275)
...+.... .+...+.+....+..+.+..-..+...+.+..+-.++. + .+++.+.+..+-. ++..+..+
T Consensus 252 ~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l 330 (446)
T PRK10197 252 SYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVV 330 (446)
T ss_pred cHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHH
Confidence 12333332 23444555556666666666556666666555443221 0 0111122211111 11111112
Q ss_pred HHhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 195 VGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 195 ~Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
.....| .++.++++.|... .+.+.++++.+++.+|
T Consensus 331 ~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 331 VNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 211222 3666776665554 4888889888888865
No 31
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.39 E-value=0.036 Score=52.41 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=48.8
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 116 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy 116 (275)
.+.++..++....|+|.+-.....+-+| +|| +|+.+|++..+..++.++|........
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E----~k~--~r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGR----AKN--KSDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH----Hhc--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999888887 788 567889999999999999988876533
No 32
>PRK10836 lysine transporter; Provisional
Probab=97.37 E-value=0.047 Score=51.83 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=47.6
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHH
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW 117 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 117 (275)
++.++..+.....|+|.+-......-+| +|||+| +.+|++..+.....++|......-..
T Consensus 203 g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 203 GFAAMIGVAMIVGFSFQGTELIGIAAGE----SEDPAK-NIPRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHH----hcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4556666666678999999998888886 899975 67899999999999999988654433
No 33
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.35 E-value=0.034 Score=51.95 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=51.4
Q ss_pred chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHH
Q 023925 52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 116 (275)
Q Consensus 52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy 116 (275)
.+..++..++....|+|.+-......-+| +|||+| +.+|++..+..++.++|........
T Consensus 184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E----~knP~r-~iPrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 184 TDGHAIIKSILLCLWAFVGVESAAVSTGM----VKNPKR-TVPLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999888886 899965 5789999999999999998877544
No 34
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.35 E-value=0.0069 Score=57.19 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=69.2
Q ss_pred chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC-CCc---hh-
Q 023925 52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ-DVD---DN- 126 (275)
Q Consensus 52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~-~~~---~~- 126 (275)
.+..++..++....|+|.|-......-+| +|||+| +++|++..+.....++|.......-...+. +.+ ++
T Consensus 203 ~g~~~~~~~~~~~~faf~G~e~~~~~a~E----~knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~ 277 (471)
T PRK11387 203 HGGLPILMTMVAVNFAFSGTELIGIAAGE----TENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPF 277 (471)
T ss_pred ccHHHHHHHHHHHHHHHcCHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChH
Confidence 34567888888899999999999988887 899976 678999999998899998877644333332 211 11
Q ss_pred --HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHh
Q 023925 127 --VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMM 168 (275)
Q Consensus 127 --il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 168 (275)
+.++... .+...+..++..++.+.+.--......+.+..+-
T Consensus 278 ~~~~~~~g~-~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~a 320 (471)
T PRK11387 278 VLVFEKVGI-PYAADIFNFVILTAILSAANSGLYASGRMLWSLS 320 (471)
T ss_pred HHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1222222 2333444555555555554444444444444443
No 35
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.31 E-value=0.082 Score=49.95 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH
Q 023925 54 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 114 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~ 114 (275)
+.++..++....|+|.|-.....+-+| +|||+| +.+|++..+.....++|......
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGE----AANPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHh----hcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999888888886 899976 67899999999999999987543
No 36
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.24 E-value=0.017 Score=54.53 Aligned_cols=176 Identities=11% Similarity=0.055 Sum_probs=92.1
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcC-CCCc---hh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG-QDVD---DN 126 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG-~~~~---~~ 126 (275)
|.++.++..++....|+|.|-......-+| +|||+| +.+|++..+.....+.|..........-+ ++.. ++
T Consensus 207 p~g~~~~~~~~~~~~~af~G~e~~~~~a~E----~knP~r-~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p 281 (469)
T PRK11049 207 PKGLSGFFAGFQIAVFAFVGIELVGTTAAE----TKDPEK-SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSP 281 (469)
T ss_pred cccHHHHHHHHHHHHHHHhcHHHHHHHHHH----hcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCc
Confidence 455678999999999999999999988887 899975 57888877676777778766554432211 1111 11
Q ss_pred ---HhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeehhhHHHH-HHHHHH
Q 023925 127 ---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVVARSAYV-AFTLFV 195 (275)
Q Consensus 127 ---il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~~r~~~~-~~~~~~ 195 (275)
+..... ..+...+..++..+..+.+.-.......+.+..+-..+. + .+++.+.+..+-...+ .+...+
T Consensus 282 ~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~ 360 (469)
T PRK11049 282 FVELFVLVG-LPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVL 360 (469)
T ss_pred HHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 111111 122333444444555544444333444444433332211 0 0111122211111111 111223
Q ss_pred HhhcCChhhHHhhhhhhh--hhhhHhhhhhHHHHHHhCC
Q 023925 196 GVTFPFFGDLLGFFGGFG--FTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 196 Ai~vp~~~~v~~l~Ga~~--~~~l~filP~l~yl~~~~~ 232 (275)
....|+.++.++.+-+++ ...+.|++++..+++.+++
T Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 361 LYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566544444333322 3456788888888887654
No 37
>PRK15049 L-asparagine permease; Provisional
Probab=97.16 E-value=0.025 Score=53.93 Aligned_cols=174 Identities=12% Similarity=0.111 Sum_probs=96.4
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC-CC---chh
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ-DV---DDN 126 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~-~~---~~~ 126 (275)
|.++.+++.++....|+|.|-......-+| +|||+| +.+|++..+.....++|...........+. +. +++
T Consensus 216 p~g~~~~~~~~~~~~faf~G~e~i~~~aeE----~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP 290 (499)
T PRK15049 216 PHGLLPALVLIQGVVFAFASIEMVGTAAGE----CKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSP 290 (499)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCH
Confidence 445566777778899999999888888886 899976 578999888888888888766544333322 11 122
Q ss_pred H---hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc------C-CCCCcceeeh-hhHHHHHHHHHH
Q 023925 127 V---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGAAVRVV-ARSAYVAFTLFV 195 (275)
Q Consensus 127 i---l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------~-~~~~~~~~~~-~r~~~~~~~~~~ 195 (275)
. .+.... .+...+..+...+..+.+..-..+...+.+..+-..+. + .++..+.+.. +..++.++..++
T Consensus 291 ~~~~~~~~g~-~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l 369 (499)
T PRK15049 291 FVTFFSKLGV-PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFL 369 (499)
T ss_pred HHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 222221 23334555555666666655555555555544443221 0 0111122211 111111111122
Q ss_pred HhhcC--ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925 196 GVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 196 Ai~vp--~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~ 232 (275)
....| .++.++++.+ .+..+.|++|++.+++.+|+
T Consensus 370 ~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 370 NYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 22223 2445555444 34578899999999988753
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.15 E-value=0.059 Score=51.32 Aligned_cols=59 Identities=8% Similarity=-0.001 Sum_probs=50.2
Q ss_pred chHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925 52 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 115 (275)
Q Consensus 52 ~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g 115 (275)
.+..++..++....|+|.|-.....+-+| +|||+| +.+|++..+..++.++|.+....-
T Consensus 232 ~~~~~~~~a~~~~~~af~G~e~~~~~a~E----~knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 232 TSAGGIVLAFYSGIWAYGGWNYLNFVTEE----VKNPYR-TLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHhhhHHH----hcCchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999888886 899975 578999999999999999986544
No 39
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.15 E-value=0.1 Score=49.43 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh
Q 023925 56 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 113 (275)
Q Consensus 56 ~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~ 113 (275)
++..++....|+|.+-......-+| +|||+| +++|++..+..++.+++....+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E----~knP~r-~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEE----IENPEV-VGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHh----cCChhh-hcCHHHHHHHHHHHHHHHHHHH
Confidence 4566666678999999998888886 899965 6789999888776655444333
No 40
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.15 E-value=0.072 Score=50.90 Aligned_cols=52 Identities=8% Similarity=-0.082 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh
Q 023925 57 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 113 (275)
Q Consensus 57 ~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~ 113 (275)
....+....|+|.|-......-+| +|||+| +++|++..+..++.++|....+
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E----~knP~r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINE----LENPGR-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHH----ccCCcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 344555568899998888888886 899976 5789999998888888876443
No 41
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.07 E-value=0.029 Score=52.66 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=48.6
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 115 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g 115 (275)
|.++.++..++....|+|.+-.....+-+| +|||+| +.+|++..+......+|.......
T Consensus 197 ~~g~~~~~~a~~~~~~af~G~e~~~~~a~E----~k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~ 256 (452)
T TIGR01773 197 PNGIGAVLLAILVTMFSFMGTEIVTIAAAE----SSNPIK-SITRATNSVIWRIIVFYLGSIFIV 256 (452)
T ss_pred cccHHHHHHHHHHHHHHhccHHHHhHHHHh----hcChhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667999999999999999999988886 899976 578888877887888888765433
No 42
>PRK10580 proY putative proline-specific permease; Provisional
Probab=96.96 E-value=0.046 Score=51.39 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=47.4
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 114 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~ 114 (275)
+.++.++..++....|+|.|-......-+| +|||+| +.+|++..+.....++|......
T Consensus 195 ~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E----~knP~k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGE----AKDPEK-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred CcchHHHHHHHHHHHHHHhCHHHHHHHHHH----hcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999888887 899976 56788887777777778776543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.86 E-value=0.24 Score=46.24 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=96.6
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC-Cc-----hh
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD-----DN 126 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-~~-----~~ 126 (275)
...++..+++...++|.|-......-+| +|||+|. .+|++..+...+..+|...........+++ .. .+
T Consensus 199 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E----~knp~r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p 273 (466)
T COG0531 199 SFGGILAAILLAFFAFTGFEAIATLAEE----VKNPKRT-IPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAP 273 (466)
T ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHH----hcCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCcc
Confidence 4457888999999999999999888886 8998765 679999999999999999888766666542 11 11
Q ss_pred HhhCC--CCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc--------CCCCCcceeehhhHHHHHHHHHHH
Q 023925 127 VLMAL--KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM--------NFPPGAAVRVVARSAYVAFTLFVG 196 (275)
Q Consensus 127 il~~~--~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~--------~~~~~~~~~~~~r~~~~~~~~~~A 196 (275)
..... ..+.+...+..+...+....+.........+.+..+-+.+. +.+.+.+.+...-...+.. .+.
T Consensus 274 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~ 351 (466)
T COG0531 274 LALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILL 351 (466)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHH
Confidence 11110 11134444555555666666654444444444333332210 1111112221221111111 122
Q ss_pred hhcC----ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925 197 VTFP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 197 i~vp----~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~ 232 (275)
...+ .++.+.++. .....+.|.++.+..++.+++
T Consensus 352 ~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 352 LLFPLSSIAFNALVSLA--SVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHhhccccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 2222 244444433 334568899999998888765
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.65 E-value=0.46 Score=45.22 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH
Q 023925 55 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 115 (275)
Q Consensus 55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g 115 (275)
.++..++....|+|.+-......-+| +|||+| +.+|++..+......+|.+.....
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E----~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDK----TENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHh----ccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788889999999998888886 899976 578999999999999999865443
No 45
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.62 E-value=0.45 Score=48.96 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhH
Q 023925 56 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 114 (275)
Q Consensus 56 ~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~ 114 (275)
+++..++++.+||.|-.....+-.| +|||+| +.++++..+..+++++|+++.+.
T Consensus 281 ~f~~~~ai~F~A~tGi~agan~sgE----lKnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 281 GFFSLFGIFFPSVTGILAGANISGD----LKDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----ccChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888899998888777775 899986 67899999999999999999763
No 46
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.05 E-value=0.13 Score=46.56 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=93.3
Q ss_pred cchHhHHHHHHH-HHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch----
Q 023925 51 ADYMFRVFNALG-QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD---- 125 (275)
Q Consensus 51 ~~~~~~~~~a~~-~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~---- 125 (275)
+.++.+...+.- ...++|.+.....-...+ +|||++ .+|+...+..++..+|...-...-..+|.+..+
T Consensus 174 ~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~----~~~~~~--~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~ 247 (359)
T TIGR00912 174 ENGLSPILKGAYPVVTFAFGEIEIFFLLFPL----LSKKKK--IKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYW 247 (359)
T ss_pred ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHH----hCChhh--hHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcc
Confidence 345566565554 777888766665555554 677654 459999999999999998888877778754322
Q ss_pred ---hHhhCCCCChHHH---HHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhc
Q 023925 126 ---NVLMALKRPGWLI---AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTF 199 (275)
Q Consensus 126 ---~il~~~~~~~~~~---~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~v 199 (275)
+..+..+-++..- .+....-......+.-+..+.....+++.+..+++ +....-.+. +...++ ..
T Consensus 248 P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~-~~ 318 (359)
T TIGR00912 248 PTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY------SILILPVLM--VIFSIS-FF 318 (359)
T ss_pred cHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHHH-Hc
Confidence 1222222111111 12222334666777777788888888888754421 112222221 222333 34
Q ss_pred CC-hhhHHhhhh---hhhhhhhHhhhhhHHHHHHhCC
Q 023925 200 PF-FGDLLGFFG---GFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 200 p~-~~~v~~l~G---a~~~~~l~filP~l~yl~~~~~ 232 (275)
|+ .+. ..... ...+....+++|.++.+...-+
T Consensus 319 ~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 319 PDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 322 22222 1233456678899877766533
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=95.99 E-value=1.5 Score=41.51 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcC
Q 023925 55 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 120 (275)
Q Consensus 55 ~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 120 (275)
..+..+.....|+|.|-.....+-+| +|||+| +.+|++..+..+..++|...-+......+
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE----~knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEE----TKNPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHH----hcCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44556666778999999998888886 899976 57899999988887666555444333333
No 48
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=95.02 E-value=0.37 Score=44.88 Aligned_cols=175 Identities=14% Similarity=0.194 Sum_probs=98.6
Q ss_pred CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHH-----hhhhHHHHHcCCCCc
Q 023925 50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYF-----PVALIGYWAFGQDVD 124 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~-----~~g~~gy~~fG~~~~ 124 (275)
.|.++.+++.++-+.+|||++...+=---.| -|||+|. .+|+...-..=..++|. ++.+.-|-.++++.+
T Consensus 198 fP~G~~g~~~~~~~v~Faf~GiElvGitA~E----t~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S 272 (462)
T COG1113 198 FPNGFLGFLSALQIVMFAFGGIELVGITAAE----AKDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS 272 (462)
T ss_pred CCCchHHHHHHHHHHHHHHhhHHHHHHHHHh----hcChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC
Confidence 4888999999999999999998776655565 6899764 55665533333333343 344444444444333
Q ss_pred h--hHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccC------C-CCCcc-eeehhhHHHHHHHHH
Q 023925 125 D--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN------F-PPGAA-VRVVARSAYVAFTLF 194 (275)
Q Consensus 125 ~--~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~------~-~~~~~-~~~~~r~~~~~~~~~ 194 (275)
+ .+...+.-+ +...+.+.-.......++-=-++...+++..+-.++.. . ++..+ .-+........++.+
T Consensus 273 PFV~~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~ 351 (462)
T COG1113 273 PFVTVFSLIGIP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVV 351 (462)
T ss_pred cHHHHHHHcCCc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHH
Confidence 3 222222211 22234444344444555555556666776666532211 0 11112 224566667777778
Q ss_pred HHhhcCChhhHHhhhhhhhh--hhhHhhhhhHHHHHHhCC
Q 023925 195 VGVTFPFFGDLLGFFGGFGF--TPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 195 ~Ai~vp~~~~v~~l~Ga~~~--~~l~filP~l~yl~~~~~ 232 (275)
+....| +.++.++=+..+ ......+=.+.|+|.+|.
T Consensus 352 Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 352 LNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRKA 389 (462)
T ss_pred HHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888 445544433333 234455667888998873
No 49
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.31 E-value=0.51 Score=45.55 Aligned_cols=174 Identities=12% Similarity=0.103 Sum_probs=105.4
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHH-H-cCCC-CchhH
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW-A-FGQD-VDDNV 127 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~-~-fG~~-~~~~i 127 (275)
|..+.++..++-...|+|.+-..+-..-+| -|||+| +.++++..++..++++|....+.-=+ . |.|. ..++.
T Consensus 228 p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E----~kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~ 302 (554)
T KOG1286|consen 228 PFGFKGVLSGAATAFFSFIGFELVATTAEE----AKNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA 302 (554)
T ss_pred CCCcceeeHHHHHHHHHHhhHHHHHHHHHh----ccCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC
Confidence 445888999999999999998888777776 799975 57899999999999999998864322 2 3221 22211
Q ss_pred ------h--hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCC----CCCccee-ehhhHHHHHHHHH
Q 023925 128 ------L--MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF----PPGAAVR-VVARSAYVAFTLF 194 (275)
Q Consensus 128 ------l--~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~----~~~~~~~-~~~r~~~~~~~~~ 194 (275)
. .+.+.-...-.+.+....+.+..+---.+++..+.+-.+-..+.-. ..++..+ +.-..+..++..+
T Consensus 303 ~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l 382 (554)
T KOG1286|consen 303 ALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGAL 382 (554)
T ss_pred ccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHH
Confidence 1 1111111211356666777777777777888888888775433210 0111111 2222222233333
Q ss_pred HHhhcC-----ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 195 VGVTFP-----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 195 ~Ai~vp-----~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
.++... .++.++++.|--+ .+++.+=++.|++.++
T Consensus 383 ~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 383 AALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeeeee
Confidence 344332 2488888876654 5666666667766654
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.25 E-value=0.16 Score=47.92 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=53.0
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 121 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 121 (275)
++.++..++....++|.+-......-+| .|||+| +++|+...+.....++|.......-...+.
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E----~k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEE----AKNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred chhHHHHhhhhhhccccccccccccccc----CCCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 3788999999999999999888877776 799975 578999999999999999887765555554
No 51
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=93.48 E-value=6.7 Score=36.78 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=84.8
Q ss_pred cchHhHHHHHHHHHHHHhh-CCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC-chhHh
Q 023925 51 ADYMFRVFNALGQISFAFA-GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-DDNVL 128 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~-~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-~~~il 128 (275)
|.++.++..+++...-.+. .........+- +|+|+.++.-.....+......+-+..|...-.+=|+.- ..++.
T Consensus 189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy----~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~ 264 (442)
T COG1457 189 PTSPLSFLSALSLVIGSFASWGPYAADYSRY----APSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVM 264 (442)
T ss_pred CCcchhHHHHHHHHHHHHHhhhhhhhhhhhh----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 4455555555554332222 23334444443 444432121133445566677778888888888888765 33444
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh----cCChhh
Q 023925 129 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT----FPFFGD 204 (275)
Q Consensus 129 ~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~----vp~~~~ 204 (275)
..+.. +. ..+-+...++...+=-.++++..-.+.....+- ++.++.....+. ...++|+. ..+++.
T Consensus 265 ~~~G~--~g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~ 334 (442)
T COG1457 265 LGLGG--FG-LPAILILVLGTVTTNANNLYSAGLSFANIIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFEN 334 (442)
T ss_pred Hhccc--HH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44332 22 244445566666666667777766666665432 223333332222 33333333 457888
Q ss_pred HHhhhhhhhhhhhHhhhhhH
Q 023925 205 LLGFFGGFGFTPTSYFLPSI 224 (275)
Q Consensus 205 v~~l~Ga~~~~~l~filP~l 224 (275)
++.++|+.........+--.
T Consensus 335 Fl~~i~~~i~P~~~I~iad~ 354 (442)
T COG1457 335 FLLLLGYFIPPWGGVMIADY 354 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887765555554333
No 52
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=91.99 E-value=7.9 Score=36.26 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=79.5
Q ss_pred cchHhHHHHHHHHHHHH-hhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHH----cCCCCch
Q 023925 51 ADYMFRVFNALGQISFA-FAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA----FGQDVDD 125 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~fa-f~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fG~~~~~ 125 (275)
+.....+..+++..+=. -+.-.+.+...+. +|+|+... +....++.........+|..+-.. +|+...+
T Consensus 203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy----~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~ 276 (442)
T TIGR00800 203 STGAWAFLYALSLVIGSFATWATNAPDFTRF----GKSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS 276 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCchhhhhh----cCCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 44556666666653322 2334566777775 55544433 446667777777777777777665 8775433
Q ss_pred --hHhhCCCCChHHHH-----HHHHHHHHHHH-HhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHH-
Q 023925 126 --NVLMALKRPGWLIA-----AANLMVVVHVI-GSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVG- 196 (275)
Q Consensus 126 --~il~~~~~~~~~~~-----i~~~~~~i~~~-~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A- 196 (275)
+++..+........ ...++..+..+ ..--.+.++....+...+.+.. +.+|.. .+..++..+++
T Consensus 277 p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~~~-----~~~r~~--~i~~ii~~~~~~ 349 (442)
T TIGR00800 277 PLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPKYI-----KIKRGS--LICAIIALLICP 349 (442)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcCcc-----ccchHH--HHHHHHHHHhcc
Confidence 33333332211111 11122222222 3444566777676666664321 122311 11111222222
Q ss_pred ----hhcCChhhHHhhhhhhhhhhhHhhh
Q 023925 197 ----VTFPFFGDLLGFFGGFGFTPTSYFL 221 (275)
Q Consensus 197 ----i~vp~~~~v~~l~Ga~~~~~l~fil 221 (275)
-..+.+.++++++|..........+
T Consensus 350 ~~~~~~~~~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 350 WNLYNSSSKFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223566688888888776665554
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=91.52 E-value=4.5 Score=36.01 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=74.7
Q ss_pred CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch----
Q 023925 50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD---- 125 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~---- 125 (275)
.+.++.+.+.+.-...+.|.+-....-+... .|||++. .|....+.......|...-...-..||.+..+
T Consensus 170 ~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~----~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~ 243 (320)
T PF03845_consen 170 LESGIKPILKGSLVISFPFGGIEILLFLFPF----VKDKKKL--KKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTY 243 (320)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceec
Confidence 3567788888877788888877666666664 5666554 38888888888888888888888888864222
Q ss_pred h---HhhCCCCChHH---HHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhc
Q 023925 126 N---VLMALKRPGWL---IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 171 (275)
Q Consensus 126 ~---il~~~~~~~~~---~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~ 171 (275)
+ ..+..+-++.. -.+....-......+.-+..+...+.+.+.+..+
T Consensus 244 P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 244 PVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 11222111111 1122223345666677778888888888888654
No 54
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=90.56 E-value=13 Score=35.73 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=98.3
Q ss_pred CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhh-HHHHH-cCCC-----
Q 023925 50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL-IGYWA-FGQD----- 122 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~-~gy~~-fG~~----- 122 (275)
.+.++.++...+-+..|+|.+...+----.| -+||+| ..+|++.-.+-=..++|+..-+ .|-+. |.|.
T Consensus 229 F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE----s~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~ 303 (541)
T COG0833 229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGE----SENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGN 303 (541)
T ss_pred CCcchHHHHHHHhhheeeeeceeeeeeeecc----cCCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccC
Confidence 4667888999999999999988776555554 788875 5678887766666666665443 23322 3330
Q ss_pred -----CchhHhhCCCC--ChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccC-------CCCCcceeehhhHHH
Q 023925 123 -----VDDNVLMALKR--PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-------FPPGAAVRVVARSAY 188 (275)
Q Consensus 123 -----~~~~il~~~~~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~-------~~~~~~~~~~~r~~~ 188 (275)
.+++....+++ -.....+.|..++++++.+--=.++...+++..+-..+.. +++..+...+..+.+
T Consensus 304 ~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~ 383 (541)
T COG0833 304 SSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLL 383 (541)
T ss_pred CcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHH
Confidence 11222222211 1123345666666677666666677778888777654431 112223232222333
Q ss_pred HHHHHHHHhhcC---ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 189 VAFTLFVGVTFP---FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 189 ~~~~~~~Ai~vp---~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
..+...++...+ .++-++++.|-.. .++.+-=++.|++-+|
T Consensus 384 fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 384 FGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 333233333323 3556677766554 4556666777877764
No 55
>PRK11375 allantoin permease; Provisional
Probab=83.21 E-value=43 Score=31.87 Aligned_cols=154 Identities=11% Similarity=0.075 Sum_probs=74.4
Q ss_pred HhHHHHHHHHHHHHhh-CCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHH----HHHcCCCCch--h
Q 023925 54 MFRVFNALGQISFAFA-GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG----YWAFGQDVDD--N 126 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~-~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~~~~--~ 126 (275)
...+..++...+=++. .-.+.|..-+- .|++++.. +....++.+...+...+|... ...+|+...+ +
T Consensus 226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy----~k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~ 299 (484)
T PRK11375 226 GFLFLVVINAVVAVWAAPAVSASDFTQN----AHSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLD 299 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhcc----cCChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHH
Confidence 4445555543333343 33467777775 45543322 333345555555544444432 4567765443 3
Q ss_pred HhhCCCCChHHHHHHHHHHHHHHHHh-hhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh--cCC--
Q 023925 127 VLMALKRPGWLIAAANLMVVVHVIGS-YQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT--FPF-- 201 (275)
Q Consensus 127 il~~~~~~~~~~~i~~~~~~i~~~~s-~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~--vp~-- 201 (275)
++..... ......+-+...++...+ ...+.++....+...++++.+ ++|...-.. ++..+++.. +.+
T Consensus 300 i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~-----~~~~~~i~~--iig~~~~pw~~~~~~~ 371 (484)
T PRK11375 300 IVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLT-----YKNGVLIAS--IISLLICPWKLMENQD 371 (484)
T ss_pred HHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccc-----hhhHHHHHH--HHHHHhccHHHhccHH
Confidence 3333321 122223334444444444 345777887777777754321 222211111 122222222 223
Q ss_pred -hhhHHhhhhhhhhhhhHhhh
Q 023925 202 -FGDLLGFFGGFGFTPTSYFL 221 (275)
Q Consensus 202 -~~~v~~l~Ga~~~~~l~fil 221 (275)
|.+++++.|++.+.....++
T Consensus 372 ~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 372 SIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888776665554
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=82.96 E-value=46 Score=32.04 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=41.7
Q ss_pred cchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCC
Q 023925 51 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 121 (275)
Q Consensus 51 ~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 121 (275)
+.+.+.+..++-.-...+.|-.....+-+| -||+++. -+|++..+..++.++-..+-+.-..+-++
T Consensus 248 ~~~G~afil~f~~~~wt~sGyDa~~H~aEE----~~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 248 KNNGWAFILGFFNPAWTMSGYDAAAHMAEE----TKNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred CcchHHHHHhhccceeEEeccCchHHHHHH----hcchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334455665555556666676777777776 6887764 46777777777766655555544555554
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=79.61 E-value=51 Score=30.32 Aligned_cols=130 Identities=11% Similarity=0.123 Sum_probs=69.0
Q ss_pred ccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhh
Q 023925 74 ALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSY 153 (275)
Q Consensus 74 ~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~ 153 (275)
.+...+- .|+|++ .......+..+...+-..+|...-.+.++.-..+++... ... ..+-+...++...+-
T Consensus 192 ~~DysRy----~k~~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g~~-~~~~~~~~l~~~~~n 261 (386)
T TIGR02358 192 IADYTRF----ARNPRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA---GLG-IPALLIILLSTVTTT 261 (386)
T ss_pred ccchhhh----cCCCcc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---cHH-HHHHHHHHHhHHHHH
Confidence 5666664 344322 225555677777788888888777776653222333222 111 133344455556666
Q ss_pred hhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhh--cCChhhHHhhhhhhhhhhhHhhh
Q 023925 154 QVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT--FPFFGDLLGFFGGFGFTPTSYFL 221 (275)
Q Consensus 154 pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~--vp~~~~v~~l~Ga~~~~~l~fil 221 (275)
..+.++....+...+.+. +++++.. +..++..+++.. ...+.+++++.|...+......+
T Consensus 262 ~~N~ys~~l~l~~l~~~~-----~~~~~~~---i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i 323 (386)
T TIGR02358 262 FMDIYSAAISTGNLLPRL-----KVKHLAI---GVGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVF 323 (386)
T ss_pred HHHHHHHHHHHHHHHHhh-----cchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776432 1111211 122222333332 34677888888887765555444
No 58
>PRK10484 putative transporter; Provisional
Probab=74.59 E-value=83 Score=30.19 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=22.9
Q ss_pred CccccchhccCCcCCCCCccccchhhhhHHHHHHH---HHHHhhhhHHHHHcCC
Q 023925 71 HAVALEIQATIPSTPEKPSKILMWKGALGAYFVNA---ICYFPVALIGYWAFGQ 121 (275)
Q Consensus 71 ~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~---~~y~~~g~~gy~~fG~ 121 (275)
|+..-.... .||+++-+ |...++..... ......|+.++..|++
T Consensus 261 q~~~qR~~a-----ak~~k~a~--~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~ 307 (523)
T PRK10484 261 QSIVQRALG-----AKNLAEGQ--KGALLAAFFKLLGPLILVLPGIIAFHLYGD 307 (523)
T ss_pred HHHHHHHHh-----CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444445555 35544333 55544433222 2334558888888876
No 59
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=67.96 E-value=1e+02 Score=28.43 Aligned_cols=140 Identities=12% Similarity=0.115 Sum_probs=68.8
Q ss_pred ccccchhccCCcCCCCCccccchhhhhHHH---HHHHHHHHhhhhHHHHHcC---CC-CchhHhhCCC---CChHHHHHH
Q 023925 72 AVALEIQATIPSTPEKPSKILMWKGALGAY---FVNAICYFPVALIGYWAFG---QD-VDDNVLMALK---RPGWLIAAA 141 (275)
Q Consensus 72 ~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~---~~~~~~y~~~g~~gy~~fG---~~-~~~~il~~~~---~~~~~~~i~ 141 (275)
..+-.+.+. ++|||++. .++....+. .....+|...+..|-..-+ +. -.++++.+.. -++....+.
T Consensus 198 iiv~~i~~~---g~~~~~~~-~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll 273 (378)
T TIGR00796 198 IVVNAIRSR---GVTKPKKI-TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLL 273 (378)
T ss_pred HHHHHHHHh---CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHH
Confidence 344444452 37777654 344554444 3445566666666654432 11 1234443331 123334445
Q ss_pred HHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhh
Q 023925 142 NLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFL 221 (275)
Q Consensus 142 ~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~fil 221 (275)
.+.+.+.++.+---....+.|.+++...+ ......-....+.+..++. -.++.++++ +...+.++.
T Consensus 274 ~i~v~lACLtT~iGli~~~a~~f~~~~~k--------~~y~~~v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~Y 339 (378)
T TIGR00796 274 GLIITLACLTTAVGLTTACSEYFHKLVPK--------LSYKTWVIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIY 339 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHH
Confidence 55566666666555555566666665421 1111222222233333333 277777774 456677777
Q ss_pred hhHHHHHH
Q 023925 222 PSIMWLVI 229 (275)
Q Consensus 222 P~l~yl~~ 229 (275)
|...-+..
T Consensus 340 P~~i~lil 347 (378)
T TIGR00796 340 PLAIVLIL 347 (378)
T ss_pred HHHHHHHH
Confidence 77665544
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=62.59 E-value=1.1e+02 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=17.3
Q ss_pred CCCccccchhhhhHHHHHHHHHHH---hhhhHHHHHcC
Q 023925 86 EKPSKILMWKGALGAYFVNAICYF---PVALIGYWAFG 120 (275)
Q Consensus 86 ~~p~~~~~~~~~~~a~~~~~~~y~---~~g~~gy~~fG 120 (275)
||+++- +|...++.......+. .+|+.++..+.
T Consensus 230 ks~~~~--r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 230 KSAKHA--KKGCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred CCHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544433 3666666554444444 45555555564
No 61
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=58.96 E-value=1.6e+02 Score=27.59 Aligned_cols=56 Identities=18% Similarity=0.060 Sum_probs=42.6
Q ss_pred CcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCC
Q 023925 177 GAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 232 (275)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~ 232 (275)
.+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+.++++.++-.+|+
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 45566777766666666665555599999999999988888888888888777765
No 62
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=57.40 E-value=20 Score=25.64 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC
Q 023925 58 FNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV 123 (275)
Q Consensus 58 ~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 123 (275)
....|++..+..|.....+..++ ++|+...++.....+++.. +-+.+|++-|-+||...
T Consensus 14 vli~GiiLL~~aCIfAfidfsK~-----~~~~~~~wRalSii~FI~g--iil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 14 VLIGGIILLIAACIFAFIDFSKN-----TKPTDYTWRALSIICFILG--IILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhccC-----CCCchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 34567777777888888888884 7787766533333555444 44678888899998765
No 63
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=56.93 E-value=1.9e+02 Score=27.77 Aligned_cols=161 Identities=13% Similarity=0.056 Sum_probs=77.9
Q ss_pred CcchHhHHHHHHHHHHHHh-hCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHh----hhhHHHHHcCCCCc
Q 023925 50 SADYMFRVFNALGQISFAF-AGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFP----VALIGYWAFGQDVD 124 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf-~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~----~g~~gy~~fG~~~~ 124 (275)
.+..++.+..++....=.| +.--|.|..-+. -|+|+... .--.++..+.+.+..+ ++..++..||+...
T Consensus 235 ~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRf----a~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w 308 (497)
T COG1953 235 GSNSSWAFLAGIAAWVGFWATLALNIPDFTRF----AKSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIW 308 (497)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCchhhcc----cCChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccC
Confidence 3444555555543332222 244667777775 34433322 1122344444444444 44567888999865
Q ss_pred h--hHhhCCCCChHHHHHHHHHHHHHH-HHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehh---hHHHHHHHHHHHhh
Q 023925 125 D--NVLMALKRPGWLIAAANLMVVVHV-IGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVA---RSAYVAFTLFVGVT 198 (275)
Q Consensus 125 ~--~il~~~~~~~~~~~i~~~~~~i~~-~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~Ai~ 198 (275)
+ +++.++.+.....-++.+.+++.. -....-+..+....+...+++.-+ .||-.. ...+.+..+-+=..
T Consensus 309 ~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~Pk~in-----~krg~liaA~ial~~~PW~l~~s 383 (497)
T COG1953 309 DPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYDLSALFPKYIN-----IKRGGLIAAIIALLICPWNLLES 383 (497)
T ss_pred CHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHhcccccc-----hhhhHHHHHHHHHHHcChHHHcC
Confidence 5 778888755433213333333332 222333344444445555554322 223211 11222222222223
Q ss_pred cCChhhHHhhhhhhhhhhhHhhh
Q 023925 199 FPFFGDLLGFFGGFGFTPTSYFL 221 (275)
Q Consensus 199 vp~~~~v~~l~Ga~~~~~l~fil 221 (275)
-..+..+++..|++.++....++
T Consensus 384 ~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 384 SSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777788876666654
No 64
>PRK12488 acetate permease; Provisional
Probab=55.93 E-value=2e+02 Score=27.84 Aligned_cols=45 Identities=11% Similarity=-0.051 Sum_probs=22.6
Q ss_pred CCccccchhccCCcCCCCCccccchhhhhHHHHHHHH---HHHhhhhHHHHHcCC
Q 023925 70 GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAI---CYFPVALIGYWAFGQ 121 (275)
Q Consensus 70 ~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~---~y~~~g~~gy~~fG~ 121 (275)
.++....++. .||++.-| |...++...... ....+|+.+...+++
T Consensus 277 ~p~~~qR~~a-----aks~k~ar--~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~ 324 (549)
T PRK12488 277 LPHILMRFFT-----VSDAREAR--KSVLYATGFIGYFYLLIIVVGFGAIVMVGT 324 (549)
T ss_pred CcHHHHHhhc-----CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444 35554443 665555433333 334566666666654
No 65
>PHA02898 virion envelope protein; Provisional
Probab=54.30 E-value=27 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhH
Q 023925 57 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNV 127 (275)
Q Consensus 57 ~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~i 127 (275)
-....|++..+-.|.....+..++ ++|++..++....++++.. .-+++|++-|-+||....++.
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~-----~~~~~~~wRalSii~FIlg--ivl~lG~~ifs~y~r~C~~~~ 76 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKS-----EKPADSALRSISIISFILA--IILILGIIFFKGYNMFCGGNT 76 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcC-----CCcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhcCCCc
Confidence 334567777777777777888884 6676655433333444443 346788888999987655543
No 66
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=53.74 E-value=48 Score=27.48 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=49.4
Q ss_pred hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925 202 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK----------RFSPKWIINWASIFIGVFIMLASTIGGFRNIVA 266 (275)
Q Consensus 202 ~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~----------~~~~~~~~~~~~i~~g~~~~v~gt~~si~~ii~ 266 (275)
++...-..|++.+.=+-.++|+...+..++++ .++.+-....+.-.+|++..+++...|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455667777777788888999999998763 123344677888899999999999999988865
No 67
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=52.28 E-value=15 Score=22.43 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHcCCC
Q 023925 96 GALGAYFVNAICYFPVALIGYWAFGQD 122 (275)
Q Consensus 96 ~~~~a~~~~~~~y~~~g~~gy~~fG~~ 122 (275)
+...+..+..++-.++|...|.+||..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 445566667777788888889999863
No 68
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=49.07 E-value=16 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.062 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHcCCC
Q 023925 95 KGALGAYFVNAICYFPVALIGYWAFGQD 122 (275)
Q Consensus 95 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~ 122 (275)
.+...+..+..++-.++|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4566667777778888888889999974
No 69
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=49.05 E-value=2.4e+02 Score=26.82 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=10.4
Q ss_pred HHHHhhhhHHHHHcCC
Q 023925 106 ICYFPVALIGYWAFGQ 121 (275)
Q Consensus 106 ~~y~~~g~~gy~~fG~ 121 (275)
..-..+|+.|+..+.+
T Consensus 283 ~~~~~ig~~~~~~~~~ 298 (502)
T PRK15419 283 AGAVAVGFFGIAYFNE 298 (502)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455677878777654
No 70
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=48.46 E-value=35 Score=29.18 Aligned_cols=79 Identities=20% Similarity=0.463 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcCChhhHHhh---------hhhhhhhhhHhhhhhHHHHHHhCCCC-----CChHHHHHHHHHHHHHHH
Q 023925 187 AYVAFTLFVGVTFPFFGDLLGF---------FGGFGFTPTSYFLPSIMWLVIKKPKR-----FSPKWIINWASIFIGVFI 252 (275)
Q Consensus 187 ~~~~~~~~~Ai~vp~~~~v~~l---------~Ga~~~~~l~filP~l~yl~~~~~~~-----~~~~~~~~~~~i~~g~~~ 252 (275)
...+..+++|..++.++-++.. -||.++--++++= |+.+-+.+. ...+.|+.|+++++|.++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 4445556666666666666554 4788777777664 444433321 112457778999999999
Q ss_pred HHHHHHH--HHHHHHHhcc
Q 023925 253 MLASTIG--GFRNIVADAS 269 (275)
Q Consensus 253 ~v~gt~~--si~~ii~~~~ 269 (275)
..-+++. .++.+-+.+.
T Consensus 237 ~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHhHHHHhhHHHHHh
Confidence 9888754 5555555443
No 71
>CHL00020 psbN photosystem II protein N
Probab=47.50 E-value=14 Score=22.63 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHcCCC
Q 023925 95 KGALGAYFVNAICYFPVALIGYWAFGQD 122 (275)
Q Consensus 95 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~ 122 (275)
.+...+..+..++...+|..-|-+||..
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 4555667777777888888888999974
No 72
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=47.38 E-value=2.2e+02 Score=25.83 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=13.1
Q ss_pred hhhhhhhhhhhHhhhhhHHHH
Q 023925 207 GFFGGFGFTPTSYFLPSIMWL 227 (275)
Q Consensus 207 ~l~Ga~~~~~l~filP~l~yl 227 (275)
-+-+..+...+.+++++++-.
T Consensus 318 ~lYpi~G~vg~~~l~~~l~~~ 338 (349)
T COG3949 318 KLYPILGYVGLLILFAVLYKY 338 (349)
T ss_pred HHhhHHHHHHHHHHHHHHHhh
Confidence 344455556677788777655
No 73
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=42.32 E-value=3e+02 Score=26.01 Aligned_cols=28 Identities=18% Similarity=-0.008 Sum_probs=13.7
Q ss_pred hhhhhHHHHHH---HHHHHhhhhHHHHHcCC
Q 023925 94 WKGALGAYFVN---AICYFPVALIGYWAFGQ 121 (275)
Q Consensus 94 ~~~~~~a~~~~---~~~y~~~g~~gy~~fG~ 121 (275)
+|....+.... ......+|+.|...+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 294 (487)
T TIGR02121 264 PKARRIGMSWMILSLLGAIAVGLTGIAYFNK 294 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35554443322 23345566667665544
No 74
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=41.93 E-value=78 Score=22.55 Aligned_cols=60 Identities=7% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCch
Q 023925 59 NALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD 125 (275)
Q Consensus 59 ~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~ 125 (275)
...|+...+-.|.....+..++ -.+|++..|+....++++.. .-+++|+++|-.|| ...+
T Consensus 15 li~GIiLL~~ACIFAfidFSK~----~s~~~~~~wRalSii~FIlG--~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKN----TSNVTDYVWRALSVTCFIVG--AVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhcc----CCCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHhc-ccCC
Confidence 3456666666677777777774 23666766533333444444 34567889999998 4433
No 75
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=41.70 E-value=68 Score=25.48 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=37.9
Q ss_pred HhhhhhhhhhhhHhhhhhHHHHHHhCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925 206 LGFFGGFGFTPTSYFLPSIMWLVIKKPKRF-SPKWIINWASIFIGVFIMLASTIGGFRNIV 265 (275)
Q Consensus 206 ~~l~Ga~~~~~l~filP~l~yl~~~~~~~~-~~~~~~~~~~i~~g~~~~v~gt~~si~~ii 265 (275)
-+.+|+-++....|..|.+++..-.+..+. ...+--..+.+++|+..+++++..+-....
T Consensus 32 ~~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y 92 (152)
T PF07954_consen 32 KSNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQY 92 (152)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788899998887642111111 001122356788999999998887776654
No 76
>PHA03048 IMV membrane protein; Provisional
Probab=40.04 E-value=70 Score=22.87 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhh-HHHHHHHHHHHhhhhHHHHHcCCCCchh
Q 023925 59 NALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL-GAYFVNAICYFPVALIGYWAFGQDVDDN 126 (275)
Q Consensus 59 ~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~-~a~~~~~~~y~~~g~~gy~~fG~~~~~~ 126 (275)
...|++..+-.|.....+..++ +|+... +|++. ++++.. .-+++|++-|..||....++
T Consensus 15 li~GIiLL~~aCIfAfidfsK~------k~~~~~-wRalsii~FIlg--ivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKN------KATVTV-WRALSGIAFVLG--IVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcC------CCcchh-HHHHHHHHHHHH--HHHHHHHHHHHHHhcccCCC
Confidence 4456666666676667777773 344444 35444 444333 45678999999999766553
No 77
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=39.65 E-value=3.7e+02 Score=27.53 Aligned_cols=174 Identities=14% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCCCCccccchhhhhHHHHHHHHHHHhhhh-HHHHH--------cCCCCchhHhh-CC--CCChHHHHH----HHHHHHH
Q 023925 84 TPEKPSKILMWKGALGAYFVNAICYFPVAL-IGYWA--------FGQDVDDNVLM-AL--KRPGWLIAA----ANLMVVV 147 (275)
Q Consensus 84 ~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~-~gy~~--------fG~~~~~~il~-~~--~~~~~~~~i----~~~~~~i 147 (275)
|+|||+|. .+.-...|...+..+|..-.+ +|-.. ||+.+.+++.. ++ |.+ |...+ ..+.-.+
T Consensus 435 DLkDaQkS-IPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsP-wVi~IGsFlST~GAgL 512 (1075)
T KOG2082|consen 435 DLKDAQKS-IPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSP-WVIVIGSFLSTCGAGL 512 (1075)
T ss_pred cccchhhc-CchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCc-eeeehhHHHHHhHHHH
Confidence 68888764 344455666666677765443 23221 66667776543 23 433 43333 3334457
Q ss_pred HHHHhhhhhhhc-HHHHHHHHhhhccCCCC-CcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhh---
Q 023925 148 HVIGSYQVFAMP-VFHLLEGMMIKRMNFPP-GAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLP--- 222 (275)
Q Consensus 148 ~~~~s~pl~~~p-~~~~l~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP--- 222 (275)
+.+++-|=.+.. +++.+...+....+.+. .-+.+ .+++-.+.+-.++.+-+++.+-.+..=+. .+||.+=
T Consensus 513 QsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~---aLlLT~~Ice~gILigslD~iApilsmFF--LMCY~fVNLa 587 (1075)
T KOG2082|consen 513 QSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTW---ALLLTAIICECGILIGSLDLIAPILSMFF--LMCYLFVNLA 587 (1075)
T ss_pred hhhcCcHHHHHHHhhcCccchhhhhccccCCCCccH---HHHHHHHHHHhhheeechhHHHHHHHHHH--HHHHHHHhHH
Confidence 777777744433 23333333322111111 11222 22333334445566667766655553332 3454433
Q ss_pred hHHHHHHhCCCCCChHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 023925 223 SIMWLVIKKPKRFSPKWIINWASIFIGVFIM-----LASTIGGFRNI 264 (275)
Q Consensus 223 ~l~yl~~~~~~~~~~~~~~~~~~i~~g~~~~-----v~gt~~si~~i 264 (275)
|..+-.++.++.++.-++-+|.+-.+|...+ +.+.|.++..+
T Consensus 588 CavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm 634 (1075)
T KOG2082|consen 588 CAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAM 634 (1075)
T ss_pred HHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322111244565555554333 34445555444
No 78
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=39.11 E-value=3.4e+02 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=18.3
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHhhhhH---HHHHcCC
Q 023925 85 PEKPSKILMWKGALGAYFVNAICYFPVALI---GYWAFGQ 121 (275)
Q Consensus 85 m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~---gy~~fG~ 121 (275)
.||++.- +|...++......++...... +...+.+
T Consensus 263 aks~~~a--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~ 300 (483)
T PRK09442 263 YKDSKAL--HRGIIIGTIVVGFLMFGMHLAGALGRAVLPD 300 (483)
T ss_pred cCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3555443 366666655555555544444 4555554
No 79
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=38.08 E-value=3.5e+02 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=11.3
Q ss_pred chhhhhHHHHHHHHHHHhhhhHH
Q 023925 93 MWKGALGAYFVNAICYFPVALIG 115 (275)
Q Consensus 93 ~~~~~~~a~~~~~~~y~~~g~~g 115 (275)
.+|...++......++......|
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~~G 290 (471)
T TIGR02119 268 MHRAMIIGTIVVGIIMLGMHLAG 290 (471)
T ss_pred HhhhHhHHHHHHHHHHHHHHHHH
Confidence 33666655554444444444444
No 80
>COG3817 Predicted membrane protein [Function unknown]
Probab=37.30 E-value=2.8e+02 Score=24.17 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC-------------CChHHHHHHHHHHHH
Q 023925 183 VARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR-------------FSPKWIINWASIFIG 249 (275)
Q Consensus 183 ~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~-------------~~~~~~~~~~~i~~g 249 (275)
.-...+-+++.+.+..+|+++.+=.=.--+.+..+.-++-...-..+.|++- -+|.-++.+.+-.+|
T Consensus 99 iPal~ip~~tlig~~lf~~~s~~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl~d~v~wa~iLPQ~LaaLG 178 (313)
T COG3817 99 IPALLIPVLTLIGSLLFPDLSFFDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQEARRLMDQVSWAAILPQMLAALG 178 (313)
T ss_pred hHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555677778888898865100000001111222222222223333211 123446677888999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 023925 250 VFIMLASTIGGFRNIVADA 268 (275)
Q Consensus 250 ~~~~v~gt~~si~~ii~~~ 268 (275)
.+....|.-.++.++++.+
T Consensus 179 ~vFa~aGvG~~ia~L~~~~ 197 (313)
T COG3817 179 AVFASAGVGDVIAHLISEI 197 (313)
T ss_pred HHHHhcchhHHHHHHHHHH
Confidence 9999999999998888765
No 81
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=35.66 E-value=4e+02 Score=25.41 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHHHhhCCcc-ccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCC
Q 023925 60 ALGQISFAFAGHAV-ALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD 122 (275)
Q Consensus 60 a~~~~~faf~~~~~-~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~ 122 (275)
..+...+.+..++. .|...+. +++.++| ++.++........+...-..+|..+...+.+.
T Consensus 240 ~~~~~~l~~~~~~~i~~r~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 240 AWGTLFLGYFGQPHILPRFMAA-KSIKSLP--KSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred HHHHHHhhhhcCchhhhhhhhh-ccHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444455555544 4555552 1111112 22224444444444444456666666665443
No 82
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=31.79 E-value=4.4e+02 Score=24.77 Aligned_cols=117 Identities=11% Similarity=0.146 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHcC---CCCch-hHhhCCC---CChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhc
Q 023925 99 GAYFVNAICYFPVALIGYWAFG---QDVDD-NVLMALK---RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 171 (275)
Q Consensus 99 ~a~~~~~~~y~~~g~~gy~~fG---~~~~~-~il~~~~---~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~ 171 (275)
++...-.++|...+..|...-+ ++.++ +++.+.. -++....+..+.+.+.++.+---....+.|.+++... +
T Consensus 230 ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-k 308 (427)
T PF05525_consen 230 IAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-K 308 (427)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 4444556677777777766544 33443 4444432 1233444555566677777766677778888888775 2
Q ss_pred cCCCCCcceeehhhHHHHHHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHH
Q 023925 172 MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 229 (275)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~ 229 (275)
.+ .. .......+.++++|. =.++.++++. ...+.++.|...-+..
T Consensus 309 is----Y~---~~v~i~~i~S~~ian--~Gl~~Ii~~s----~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 309 IS----YK---VWVIIFTIFSFIIAN--LGLDQIIKIS----VPILMFIYPVAIVLIL 353 (427)
T ss_pred cC----hH---HHHHHHHHHHHHHHH--hCHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 11 11 111222222333222 2556666644 5678888898776665
No 83
>PRK11017 codB cytosine permease; Provisional
Probab=31.57 E-value=4.2e+02 Score=24.43 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHh-hCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCC
Q 023925 55 FRVFNALGQISFAF-AGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKR 133 (275)
Q Consensus 55 ~~~~~a~~~~~faf-~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~ 133 (275)
..+..++...+=.+ ..-.+.+..-+. .|+|++.- .....++.+...+-..+|...-.+.|+. |+.+....
T Consensus 183 ~~~~~a~~~~~g~~~~~~~~~~DysRy----~k~~~~~~--~~~~lg~~i~~~~~~~~G~~~a~~~~~~---d~~~~~~~ 253 (404)
T PRK11017 183 LDFSAALTLVVGSFISGGTLTADFVRF----GRSAKIAV--LATMVAFFLGNSLMFIFGAAGAAVYGQA---DISDVMIA 253 (404)
T ss_pred ccHHHHHHHHHHHHHHhHhcCCChHhh----ccCcccee--ehhHHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHH
Confidence 34444554433222 234556666664 34332211 2334455555666666666655566652 22222211
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhccCCCCCcceeehhhHHHHHHHHHHHh-hcCChhhHHhhhhhh
Q 023925 134 PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGV-TFPFFGDLLGFFGGF 212 (275)
Q Consensus 134 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~Ai-~vp~~~~v~~l~Ga~ 212 (275)
.+.. ...-+...+....+--.+.+...-.+.+.... + +++. ..+..++..+++. ...++.+++++.|..
T Consensus 254 ~~~~-~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~------~-~~~~--~ii~~vi~~~i~~~~~~~~~~FL~~lg~~ 323 (404)
T PRK11017 254 QGLL-IPAIVMLGLNIWTTNDNALYASGLGFCNITRL------S-SRTL--TVVNGIIGTVLALWLYNNFVGWLTLLGSA 323 (404)
T ss_pred hchH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------c-chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12222233333333333444443344443311 1 1111 1222222333332 335678888888877
Q ss_pred hhhhhHhhh
Q 023925 213 GFTPTSYFL 221 (275)
Q Consensus 213 ~~~~l~fil 221 (275)
.+......+
T Consensus 324 l~P~~gI~i 332 (404)
T PRK11017 324 IPPVGGVII 332 (404)
T ss_pred hhhhHhhhh
Confidence 665555444
No 84
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=30.81 E-value=5e+02 Score=25.10 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcCC--hhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCCC
Q 023925 187 AYVAFTLFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRF 235 (275)
Q Consensus 187 ~~~~~~~~~Ai~vp~--~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~~ 235 (275)
++.++..++|...|+ +..++++..+...+ -.+|.+ .+.+++++..
T Consensus 411 v~g~ia~~~a~~~~~~~i~~l~~~~~~~~a~---~~~p~l-llgl~Wkr~n 457 (549)
T TIGR02711 411 ILGVIAIGLGILFENQNIAFMVGLAFSIAAS---CNFPII-LLSMYWSKLT 457 (549)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHH-HHHHhcCCCC
Confidence 333445566766564 33444443333322 255664 3566666543
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.04 E-value=1e+02 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023925 242 NWASIFIGVFIMLASTIGGFRNIVADAS 269 (275)
Q Consensus 242 ~~~~i~~g~~~~v~gt~~si~~ii~~~~ 269 (275)
.++.|++|++.+|+|++.-+.=++.+.+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888876666655443
No 86
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=25.53 E-value=85 Score=20.81 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=17.5
Q ss_pred CCCccccchhhhhHHHHHHHHHHHhhhhHHHHH
Q 023925 86 EKPSKILMWKGALGAYFVNAICYFPVALIGYWA 118 (275)
Q Consensus 86 ~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 118 (275)
++|+++.+.++...+ .+-..++|..||..
T Consensus 21 ~KPd~~Ef~~iak~t----~iG~~i~G~IGf~I 49 (61)
T TIGR00327 21 KKPDLEEYLKVAKVT----GIGIIIVGIIGYII 49 (61)
T ss_pred cCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 678887765644332 33356667777754
No 87
>PTZ00206 amino acid transporter; Provisional
Probab=24.97 E-value=94 Score=29.36 Aligned_cols=21 Identities=10% Similarity=0.490 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHc
Q 023925 99 GAYFVNAICYFPVALIGYWAF 119 (275)
Q Consensus 99 ~a~~~~~~~y~~~g~~gy~~f 119 (275)
.......+.+......|...|
T Consensus 293 v~~~s~~i~~~lY~~~G~~GY 313 (467)
T PTZ00206 293 ASTIAMGMCFTMYVLTAFFGY 313 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333344455556666666665
No 88
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.91 E-value=2.7e+02 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023925 240 IINWASIFIGVFIMLASTIGGF 261 (275)
Q Consensus 240 ~~~~~~i~~g~~~~v~gt~~si 261 (275)
++...++++|++.++...|--+
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888887665433
No 89
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.30 E-value=2.2e+02 Score=22.30 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHcCCCCchhHhhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcH
Q 023925 94 WKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 160 (275)
Q Consensus 94 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 160 (275)
+|.+.+..-....+..++|+..-..+-|+. +.-+-++-..|.-...-+++.++.+..+....+|-
T Consensus 40 ~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 40 QKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 366777777777777788874444443332 22222333457666677777888888877677775
No 90
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=24.30 E-value=91 Score=20.62 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=17.2
Q ss_pred CCCccccchhhhhHHHHHHHHHHHhhhhHHHHH
Q 023925 86 EKPSKILMWKGALGAYFVNAICYFPVALIGYWA 118 (275)
Q Consensus 86 ~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 118 (275)
++|+++-+.++...+ .+-..++|..||..
T Consensus 25 ~KPd~~Ef~~ia~~~----~iG~~i~G~iGf~I 53 (61)
T PRK09400 25 RKPTREEFLLVAKVT----GLGILLIGLIGFII 53 (61)
T ss_pred cCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 678887765644332 33356667777653
No 91
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=23.51 E-value=3.5e+02 Score=24.03 Aligned_cols=27 Identities=4% Similarity=-0.127 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023925 242 NWASIFIGVFIMLASTIGGFRNIVADA 268 (275)
Q Consensus 242 ~~~~i~~g~~~~v~gt~~si~~ii~~~ 268 (275)
...+++.|++++..|.+.+++..++..
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346678888888888888888776654
No 92
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=22.69 E-value=7e+02 Score=24.06 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=7.7
Q ss_pred HhhhhhHHHHHHhCCCC
Q 023925 218 SYFLPSIMWLVIKKPKR 234 (275)
Q Consensus 218 ~filP~l~yl~~~~~~~ 234 (275)
.-++|+++ +.+++++.
T Consensus 451 ~~~~~~~l-lgl~w~r~ 466 (552)
T TIGR03648 451 ASFFPALV-LGIFWKRM 466 (552)
T ss_pred HHHHHHHH-HHHHcCCC
Confidence 44556543 45555543
No 93
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.76 E-value=2.3e+02 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023925 234 RFSPKWIINWASIFIGVFIMLASTIGGFRN 263 (275)
Q Consensus 234 ~~~~~~~~~~~~i~~g~~~~v~gt~~si~~ 263 (275)
.++..+..++.+-.++++.++.|.++..++
T Consensus 36 ~k~~~k~~H~~L~~la~~~~~~Gl~av~~~ 65 (143)
T cd08763 36 TKRSTKILHGLLHIMALVISLVGLVAVFDY 65 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455688888899999999888877643
No 94
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=21.27 E-value=94 Score=28.47 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925 190 AFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 190 ~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~ 233 (275)
++..+++...|+.+ +..+..-..+....-.+|+++. .+++|+
T Consensus 352 ~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~-gl~wkr 393 (406)
T PF00474_consen 352 IIAILLALFFPDSG-IIDLILFAFGILAAPFFPPLLL-GLYWKR 393 (406)
T ss_dssp HHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHHHH-HHH-TT
T ss_pred HhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHHH-hhccCC
Confidence 34445566666643 4444443333333334455433 334443
No 95
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.07 E-value=1.1e+03 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHhhhhHHHHH
Q 023925 97 ALGAYFVNAICYFPVALIGYWA 118 (275)
Q Consensus 97 ~~~a~~~~~~~y~~~g~~gy~~ 118 (275)
.....++.+.+|+.++++.|-.
T Consensus 25 ~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3445556677888888888865
No 96
>PF06847 Arc_PepC_II: Archaeal Peptidase A24 C-terminus Type II; InterPro: IPR009655 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This region is of unknown function, which is found at the C terminus of archaeal preflagellin aspartic acid signal peptidases []. The preflagellin peptidase is a membrane-bound enzyme topologically similar to its counterpart in the type IV pilus system (prepilin peptidase); the two enzymes utilizing the same catalytic mechanism []. The preflagellin peptidase is required for the removal of the leader peptide from archaeal flagellin []. Preflagellin aspartic acid signal peptidases belong to the MEROPS peptidase family A24B (preflagellin peptidase, clan AD).; GO: 0008233 peptidase activity; PDB: 3S0X_B.
Probab=20.26 E-value=50 Score=23.86 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHcCC
Q 023925 97 ALGAYFVNAICYFPVALIGYWAFGQ 121 (275)
Q Consensus 97 ~~~a~~~~~~~y~~~g~~gy~~fG~ 121 (275)
+|++-.+-+++.+..|....+.+||
T Consensus 67 VWVTpgiPFlvpIt~G~iial~~GD 91 (93)
T PF06847_consen 67 VWVTPGIPFLVPITAGYIIALIYGD 91 (93)
T ss_dssp EEE-----THHHHHHHHHHHHHHTT
T ss_pred EEEeCCCcCHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999998
No 97
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=20.24 E-value=1.9e+02 Score=16.83 Aligned_cols=8 Identities=13% Similarity=-0.084 Sum_probs=3.8
Q ss_pred CCCCChHH
Q 023925 232 PKRFSPKW 239 (275)
Q Consensus 232 ~~~~~~~~ 239 (275)
+++++.|+
T Consensus 4 kkKS~fek 11 (35)
T PF13253_consen 4 KKKSTFEK 11 (35)
T ss_pred ccccHHHH
Confidence 34444554
No 98
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=20.07 E-value=3.7e+02 Score=21.05 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=10.0
Q ss_pred hHhhhhhHHHHHHhCCC
Q 023925 217 TSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 217 l~filP~l~yl~~~~~~ 233 (275)
+.-++|+++.++.+-++
T Consensus 74 ~~~vlP~~~l~~~~i~~ 90 (156)
T PF08019_consen 74 LLGVLPALLLWRVRIKK 90 (156)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34456877776665433
Done!