Query 023925
Match_columns 275
No_of_seqs 141 out of 1612
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.3 4E-05 1.4E-09 69.9 17.7 174 53-234 189-380 (445)
2 3gia_A Uncharacterized protein 98.2 7E-05 2.4E-09 68.3 16.3 175 50-233 183-369 (444)
3 4djk_A Probable glutamate/gamm 97.8 0.0021 7E-08 59.6 19.9 105 57-166 203-318 (511)
4 2jln_A MHP1; hydantoin, transp 84.3 23 0.00078 32.4 14.1 115 100-221 259-378 (501)
5 3dh4_A Sodium/glucose cotransp 68.0 31 0.001 31.8 9.9 33 85-119 248-283 (530)
6 2xq2_A Sodium/glucose cotransp 47.2 1.3E+02 0.0045 27.9 10.5 43 190-233 408-450 (593)
7 1afo_A Glycophorin A; integral 33.9 68 0.0023 18.3 4.2 26 243-268 12-37 (40)
8 3mp7_B Preprotein translocase 25.2 69 0.0024 20.3 3.2 29 85-117 22-50 (61)
9 2wwb_B SEC61gamma, protein tra 22.8 43 0.0015 21.8 1.9 28 86-117 26-53 (68)
10 2ww9_B Protein transport prote 22.3 60 0.0021 21.8 2.6 30 85-118 39-68 (80)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.28 E-value=4e-05 Score=69.87 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=99.1
Q ss_pred hHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc----hhH-
Q 023925 53 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DNV- 127 (275)
Q Consensus 53 ~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~----~~i- 127 (275)
++.++..++....|+|.+........+| +|||+| +.+|++..+..+..++|...........+.+.. ++.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e----~k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~ 263 (445)
T 3l1l_A 189 TFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFG 263 (445)
T ss_dssp ----HHHHHHHHHHTTTTTTHHHHGGGG----BSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHH----hcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHH
Confidence 3667889999999999999999998887 899964 567999999999999999998877766654321 111
Q ss_pred --hhCCCCChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc-C--CCCCcceeehhhHHHHHH--HHHHHhh--
Q 023925 128 --LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-N--FPPGAAVRVVARSAYVAF--TLFVGVT-- 198 (275)
Q Consensus 128 --l~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~-~--~~~~~~~~~~~r~~~~~~--~~~~Ai~-- 198 (275)
.++.. ..+...+..+...+..+.+.--......+.+..+-..+. + ..+...++.-.+..++.. +.++...
T Consensus 264 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~ 342 (445)
T 3l1l_A 264 DAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342 (445)
T ss_dssp HHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11111 123333444555555555554445555555544433221 0 000011122222222211 1222221
Q ss_pred cC----ChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCCC
Q 023925 199 FP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 234 (275)
Q Consensus 199 vp----~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~~ 234 (275)
.| .++.+.++.+ .+..+.|.++++.+++.+++++
T Consensus 343 ~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 343 SPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp SHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred cccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 22 3555555544 2456889999999999987653
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.15 E-value=7e-05 Score=68.30 Aligned_cols=175 Identities=9% Similarity=0.067 Sum_probs=99.4
Q ss_pred CcchHhHHHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCC-----c
Q 023925 50 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-----D 124 (275)
Q Consensus 50 ~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-----~ 124 (275)
.+.++.+++.+++...|+|.+........+| +|||+| +.+|++..+..++.++|...........+.+. +
T Consensus 183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e----~k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~ 257 (444)
T 3gia_A 183 APSAVSGMIFASAIFFLSYMGFGVITNASEH----IENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE 257 (444)
T ss_dssp SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG----BSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGG
T ss_pred CCcchHHHHHHHHHHHHHHHhHHHHHHHHHH----ccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccc
Confidence 3556678889999999999999999988886 899964 56799999999999999988776554443210 0
Q ss_pred hhHhhCCC--CChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHhhhcc---CCCCCcceeehhhHHHH--HHHHHHHh
Q 023925 125 DNVLMALK--RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM---NFPPGAAVRVVARSAYV--AFTLFVGV 197 (275)
Q Consensus 125 ~~il~~~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~---~~~~~~~~~~~~r~~~~--~~~~~~Ai 197 (275)
..+..... .+++...+..+...+..+.+.--......+.+..+-..+. ...+.. ++.-.+..++ .++.+++
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~-~~~P~~a~~~~~~~~~~~~- 335 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-WFKSTEGLYITSALGVLFA- 335 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTS-CCSCTHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCC-CCCCcHHHHHHHHHHHHHH-
Confidence 01100000 0122223344444444444444444444444444433221 001111 1111122222 1122222
Q ss_pred hcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925 198 TFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 198 ~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~ 233 (275)
.+.+++.+.++.+. +..+.|.++++.+++.+|++
T Consensus 336 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 336 LLFNMEGVASITSA--VFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp HHSCHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHH
T ss_pred HHcCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcC
Confidence 23467777776544 45788899999888887654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.83 E-value=0.0021 Score=59.56 Aligned_cols=105 Identities=6% Similarity=-0.017 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhCCccccchhccCCcCCCCCccccchhhhhHHHHHHHHHHHhhhhHHHHHcCCCCc---h-------h
Q 023925 57 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---D-------N 126 (275)
Q Consensus 57 ~~~a~~~~~faf~~~~~~~~i~~~l~~~m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~---~-------~ 126 (275)
...++....|+|.|.......-+| +|||+| +.+|++..+..++.++|....+......+++.. + .
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E----~k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNE----MSNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTV 277 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSS----SSCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHh----ccCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHH
Confidence 445677889999999999998886 899975 568999999999999999998877666655321 1 1
Q ss_pred HhhCCC-CChHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHH
Q 023925 127 VLMALK-RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG 166 (275)
Q Consensus 127 il~~~~-~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 166 (275)
+..+.. ...+...+..+...+..+.+.--......+.+..
T Consensus 278 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 318 (511)
T 4djk_A 278 LMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYV 318 (511)
T ss_dssp HHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 0134444555555555555544444444444433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=84.28 E-value=23 Score=32.44 Aligned_cols=115 Identities=6% Similarity=-0.075 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhhHHHHHcCCCCchhHhhC-CCCChHHHHHHH-HHHHHHHHHhhhh-hhhcHHHHHHHHhhhccCCCC
Q 023925 100 AYFVNAICYFPVALIGYWAFGQDVDDNVLMA-LKRPGWLIAAAN-LMVVVHVIGSYQV-FAMPVFHLLEGMMIKRMNFPP 176 (275)
Q Consensus 100 a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~-~~~~~~~~~i~~-~~~~i~~~~s~pl-~~~p~~~~l~~~~~~~~~~~~ 176 (275)
+..+..++...+|...-...++.-..+++.. ++.......++- +...+..+.+=-. +.++....+.....+.
T Consensus 259 G~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~----- 333 (501)
T 2jln_A 259 GMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRV----- 333 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTT-----
T ss_pred HHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccc-----
Confidence 3444455555555543333333333344444 332222122333 4344444333332 6677777766665321
Q ss_pred CcceeehhhHHHHHHHHHHHhhc--CChhhHHhhhhhhhhhhhHhhh
Q 023925 177 GAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFTPTSYFL 221 (275)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~Ai~v--p~~~~v~~l~Ga~~~~~l~fil 221 (275)
..|.....+..++..+++... ..+.+++++.|.+.......++
T Consensus 334 --i~~~~~~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~gI~l 378 (501)
T 2jln_A 334 --FTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMI 378 (501)
T ss_dssp --CCHHHHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111112222223333322 2466777777777665555443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=67.96 E-value=31 Score=31.82 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=16.4
Q ss_pred CCCCccccchhhhhHHHHHHHHHH---HhhhhHHHHHc
Q 023925 85 PEKPSKILMWKGALGAYFVNAICY---FPVALIGYWAF 119 (275)
Q Consensus 85 m~~p~~~~~~~~~~~a~~~~~~~y---~~~g~~gy~~f 119 (275)
.||++.-+ |...++........ ...|+.++..+
T Consensus 248 aks~k~ar--~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 248 AKSVSEAQ--KGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp SSCHHHHH--HHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred cCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554333 55554444433332 44566666666
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=47.23 E-value=1.3e+02 Score=27.92 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=19.6
Q ss_pred HHHHHHHhhcCChhhHHhhhhhhhhhhhHhhhhhHHHHHHhCCC
Q 023925 190 AFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 233 (275)
Q Consensus 190 ~~~~~~Ai~vp~~~~v~~l~Ga~~~~~l~filP~l~yl~~~~~~ 233 (275)
+++.++|....+.+.+++++....+....=++|+++ +.+++++
T Consensus 408 ~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l-lglfwkr 450 (593)
T 2xq2_A 408 IIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL-LGLFWKK 450 (593)
T ss_dssp HHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH-HHHHCTT
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH-HHHHhCC
Confidence 334445544445566666554443333333344433 3444444
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=33.87 E-value=68 Score=18.31 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023925 243 WASIFIGVFIMLASTIGGFRNIVADA 268 (275)
Q Consensus 243 ~~~i~~g~~~~v~gt~~si~~ii~~~ 268 (275)
..++++|+..++.||.-.+.-.+...
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887776665543
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=25.19 E-value=69 Score=20.25 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=16.5
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHhhhhHHHH
Q 023925 85 PEKPSKILMWKGALGAYFVNAICYFPVALIGYW 117 (275)
Q Consensus 85 m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 117 (275)
-++|+++.+.++...+.. -..++|..||.
T Consensus 22 ~~KPd~~Ef~~iak~~~i----G~~i~G~iGf~ 50 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGL----GIILIGLIGML 50 (61)
T ss_dssp SCCCCTTHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 367888876665443322 34455666664
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=22.77 E-value=43 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCccccchhhhhHHHHHHHHHHHhhhhHHHH
Q 023925 86 EKPSKILMWKGALGAYFVNAICYFPVALIGYW 117 (275)
Q Consensus 86 ~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 117 (275)
++|+++.+.++...+.. -..++|..||.
T Consensus 26 ~KPdr~Ef~~iak~~~i----G~~i~G~IGf~ 53 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAI----GFAIMGFIGFF 53 (68)
T ss_dssp CCCCTHHHHHHHHHSSH----HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 68888876665443322 34566666665
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=22.35 E-value=60 Score=21.80 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=18.1
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHhhhhHHHHH
Q 023925 85 PEKPSKILMWKGALGAYFVNAICYFPVALIGYWA 118 (275)
Q Consensus 85 m~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 118 (275)
-++|+++-+.++...+ .+-..++|..||..
T Consensus 39 ~~KPdr~Ef~~iak~t----~iG~~imG~IGfiI 68 (80)
T 2ww9_B 39 CKKPDLKEYTKIVKAV----GIGFIAVGIIGYAI 68 (80)
T ss_dssp CCCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3788887765644432 23356677777753
Done!