Query 023925
Match_columns 275
No_of_seqs 141 out of 1612
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 15:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023925.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023925hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 23.1 28 0.002 20.2 2.4 30 86-119 16-45 (56)
2 d2a65a1 f.54.1.1 (A:5-513) Na( 8.4 4.9E+02 0.035 21.1 17.9 26 54-79 237-263 (509)
3 d1iwga8 f.35.1.1 (A:513-566,A: 5.2 5.1E+02 0.037 18.3 6.5 16 219-234 206-221 (222)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 5.0 3.4E+02 0.025 15.9 4.4 54 159-212 21-77 (86)
5 d1h9aa1 c.2.1.3 (A:1-181,A:413 4.3 1.1E+02 0.0079 22.1 0.6 30 202-231 4-33 (195)
6 d1ciya3 f.1.3.1 (A:33-255) del 3.8 3.2E+02 0.023 19.8 3.1 27 186-212 6-32 (223)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 3.8 4.7E+02 0.034 15.9 5.1 29 140-168 66-94 (103)
8 d3cx5c1 f.32.1.1 (C:262-385) M 3.7 4.2E+02 0.031 17.2 3.4 22 198-222 23-45 (124)
9 d1q90r_ f.23.12.1 (R:) ISP sub 3.5 2.9E+02 0.021 14.3 1.8 18 209-226 18-35 (39)
10 d1ppjc1 f.32.1.1 (C:261-379) M 3.4 4.5E+02 0.033 16.9 3.3 23 198-223 23-46 (119)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.05 E-value=28 Score=20.21 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=16.5
Q ss_pred CCCccccchhhhhHHHHHHHHHHHhhhhHHHHHc
Q 023925 86 EKPSKILMWKGALGAYFVNAICYFPVALIGYWAF 119 (275)
Q Consensus 86 ~~p~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 119 (275)
++|+++-+.++... +.+=..++|..||..+
T Consensus 16 ~KP~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp ECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 67888766554332 2223455666666543
No 2
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=8.39 E-value=4.9e+02 Score=21.08 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHhhC-Cccccchhc
Q 023925 54 MFRVFNALGQISFAFAG-HAVALEIQA 79 (275)
Q Consensus 54 ~~~~~~a~~~~~faf~~-~~~~~~i~~ 79 (275)
..-...|.+...|+++. ++.+...-+
T Consensus 237 ~~vW~~A~~Q~ffSlgiG~G~~i~~~S 263 (509)
T d2a65a1 237 PGVWIAAVGQIFFTLSLGFGAIITYAS 263 (509)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHT
T ss_pred hHHHHHHHHHHhhhhcccCCceeeehh
Confidence 34456888889999884 444444434
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.23 E-value=5.1e+02 Score=18.28 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHhCCCC
Q 023925 219 YFLPSIMWLVIKKPKR 234 (275)
Q Consensus 219 filP~l~yl~~~~~~~ 234 (275)
+++|+++++..+|.+|
T Consensus 206 ~~~Pal~~l~~r~~~r 221 (222)
T d1iwga8 206 FFVPVFFVVVRRRFSR 221 (222)
T ss_dssp SSSSSSHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhcC
Confidence 6789998887766554
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.00 E-value=3.4e+02 Score=15.92 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=27.6
Q ss_pred cHHHHHHHHhhhccCCC-CCcceeehhhHHHHHHHHHHHhhc--CChhhHHhhhhhh
Q 023925 159 PVFHLLEGMMIKRMNFP-PGAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGF 212 (275)
Q Consensus 159 p~~~~l~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~Ai~v--p~~~~v~~l~Ga~ 212 (275)
-.++.+++...+++.++ ......-..|..++.+....+... -+.+.+....|..
T Consensus 21 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~ 77 (86)
T d2vv5a3 21 MISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAA 77 (86)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34455555554432111 111223366666666666655543 3666777766665
No 5
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=4.26 E-value=1.1e+02 Score=22.12 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=24.4
Q ss_pred hhhHHhhhhhhhhhhhHhhhhhHHHHHHhC
Q 023925 202 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 231 (275)
Q Consensus 202 ~~~v~~l~Ga~~~~~l~filP~l~yl~~~~ 231 (275)
...++-+.||++--.-=-++|+++.+....
T Consensus 4 ~~t~lVIFGaTGDLa~RKL~PAL~~L~~~g 33 (195)
T d1h9aa1 4 IKTLVTFFGGTGDLAKRKLYPSVFNLYKKG 33 (195)
T ss_dssp CCEEEEEETTTSHHHHHTHHHHHHHHHHTT
T ss_pred CceEEEEECcccHHHHhHHHHHHHHHHHcC
Confidence 345566789999988899999999998754
No 6
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.81 E-value=3.2e+02 Score=19.75 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHhhhhhh
Q 023925 186 SAYVAFTLFVGVTFPFFGDLLGFFGGF 212 (275)
Q Consensus 186 ~~~~~~~~~~Ai~vp~~~~v~~l~Ga~ 212 (275)
+.+-+..++++.++|..+.+++++|-+
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 445567778888899998887766444
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.80 E-value=4.7e+02 Score=15.86 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHHHHh
Q 023925 140 AANLMVVVHVIGSYQVFAMPVFHLLEGMM 168 (275)
Q Consensus 140 i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 168 (275)
.+|+...+..+.+..+...+....-+...
T Consensus 66 ~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~ 94 (103)
T d1r3jc_ 66 WGRCVAVVVMVAGITSFGLVTAALATWFV 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444455554444444444433333
No 8
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.69 E-value=4.2e+02 Score=17.19 Aligned_cols=22 Identities=18% Similarity=0.393 Sum_probs=10.0
Q ss_pred hcC-ChhhHHhhhhhhhhhhhHhhhh
Q 023925 198 TFP-FFGDLLGFFGGFGFTPTSYFLP 222 (275)
Q Consensus 198 ~vp-~~~~v~~l~Ga~~~~~l~filP 222 (275)
.+| +++-++.+.+|+ .+-+.+|
T Consensus 23 siP~k~~Gvl~~~~si---~il~~lP 45 (124)
T d3cx5c1 23 SIPDKLLGVITMFAAI---LVLLVLP 45 (124)
T ss_dssp TSSSHHHHHHHHHHHH---HGGGGHH
T ss_pred cCCcchhhhHHHHHHH---HHHHHHH
Confidence 456 444444444443 2334555
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.50 E-value=2.9e+02 Score=14.31 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=10.1
Q ss_pred hhhhhhhhhHhhhhhHHH
Q 023925 209 FGGFGFTPTSYFLPSIMW 226 (275)
Q Consensus 209 ~Ga~~~~~l~filP~l~y 226 (275)
.|+.+........|-..|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 456665556665555444
No 10
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.38 E-value=4.5e+02 Score=16.93 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=11.7
Q ss_pred hcC-ChhhHHhhhhhhhhhhhHhhhhh
Q 023925 198 TFP-FFGDLLGFFGGFGFTPTSYFLPS 223 (275)
Q Consensus 198 ~vp-~~~~v~~l~Ga~~~~~l~filP~ 223 (275)
.+| +++-++.+.+|+ .+-+.+|-
T Consensus 23 sipnK~gGvl~m~~si---~il~~lP~ 46 (119)
T d1ppjc1 23 SIPNKLGGVLALAFSI---LILALIPL 46 (119)
T ss_dssp TCSSHHHHHHHHHHHH---HGGGTHHH
T ss_pred cCCchhHHHHHHHHHH---HHHHHHHH
Confidence 466 455555555444 34455554
Done!