Query 023927
Match_columns 275
No_of_seqs 194 out of 646
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:39:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0918 Selenium-binding prote 100.0 2.4E-92 5.2E-97 667.1 22.4 275 1-275 202-476 (476)
2 PF05694 SBP56: 56kDa selenium 100.0 1.2E-90 2.7E-95 666.5 16.4 260 1-275 195-461 (461)
3 COG2706 3-carboxymuconate cycl 100.0 3E-36 6.5E-41 282.4 19.4 177 14-245 150-334 (346)
4 PF10282 Lactonase: Lactonase, 100.0 1.5E-30 3.3E-35 244.9 21.3 167 22-243 160-332 (345)
5 PRK11028 6-phosphogluconolacto 99.9 3.7E-23 7.9E-28 191.3 21.7 170 22-247 142-318 (330)
6 PF10282 Lactonase: Lactonase, 99.7 1.6E-15 3.6E-20 142.9 23.4 186 22-267 103-303 (345)
7 PRK11028 6-phosphogluconolacto 99.7 9.1E-15 2E-19 135.3 21.1 160 24-243 53-215 (330)
8 PF02239 Cytochrom_D1: Cytochr 99.5 6.9E-13 1.5E-17 127.3 20.3 181 24-253 12-216 (369)
9 TIGR02658 TTQ_MADH_Hv methylam 99.4 4.3E-11 9.3E-16 114.7 20.2 113 27-156 26-148 (352)
10 COG2706 3-carboxymuconate cycl 99.4 6.7E-11 1.5E-15 112.0 20.9 193 27-255 15-246 (346)
11 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 8.9E-10 1.9E-14 97.2 20.3 160 27-255 136-295 (300)
12 PF02239 Cytochrom_D1: Cytochr 99.3 3.5E-10 7.6E-15 108.7 18.5 206 27-265 57-324 (369)
13 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.5E-10 1.4E-14 106.6 20.0 159 22-239 121-334 (352)
14 PRK02888 nitrous-oxide reducta 99.2 7.9E-10 1.7E-14 112.2 17.5 197 24-260 211-466 (635)
15 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 5E-09 1.1E-13 92.4 20.0 126 25-206 8-133 (300)
16 COG3391 Uncharacterized conser 99.1 3.6E-09 7.8E-14 101.7 19.2 163 11-239 74-243 (381)
17 PRK02888 nitrous-oxide reducta 99.0 1.5E-08 3.2E-13 103.0 17.0 173 27-250 295-488 (635)
18 COG3391 Uncharacterized conser 99.0 5.8E-08 1.2E-12 93.4 19.2 133 26-207 138-272 (381)
19 PF08450 SGL: SMP-30/Gluconola 98.9 1.1E-07 2.3E-12 84.8 18.2 128 28-207 115-245 (246)
20 PF08450 SGL: SMP-30/Gluconola 98.9 9.5E-08 2.1E-12 85.2 17.5 156 25-252 19-182 (246)
21 PLN02919 haloacid dehalogenase 98.8 2.6E-07 5.7E-12 99.6 20.4 186 8-239 565-774 (1057)
22 PLN02919 haloacid dehalogenase 98.7 1.6E-06 3.6E-11 93.6 20.3 179 22-240 640-838 (1057)
23 TIGR02276 beta_rpt_yvtn 40-res 98.6 2.2E-07 4.8E-12 61.1 6.3 32 120-154 1-32 (42)
24 PF07433 DUF1513: Protein of u 98.5 2.5E-06 5.3E-11 80.6 13.8 109 58-212 10-123 (305)
25 PF06433 Me-amine-dh_H: Methyl 98.3 1.5E-05 3.3E-10 76.3 14.4 114 28-158 17-140 (342)
26 PF08662 eIF2A: Eukaryotic tra 98.1 0.00025 5.4E-09 62.3 17.1 121 29-207 40-163 (194)
27 COG3386 Gluconolactonase [Carb 98.1 0.00024 5.2E-09 67.2 17.0 48 190-253 165-212 (307)
28 PRK04792 tolB translocation pr 98.1 0.00039 8.5E-09 68.4 18.6 93 27-140 241-337 (448)
29 PRK03629 tolB translocation pr 98.0 0.00047 1E-08 67.3 17.8 93 26-140 221-316 (429)
30 PF06433 Me-amine-dh_H: Methyl 97.9 8.6E-05 1.9E-09 71.1 10.6 67 113-206 38-113 (342)
31 KOG2110 Uncharacterized conser 97.9 0.00037 8E-09 67.1 14.8 142 27-232 105-249 (391)
32 PRK02889 tolB translocation pr 97.9 0.0013 2.7E-08 64.1 19.0 93 27-140 219-313 (427)
33 COG3490 Uncharacterized protei 97.9 0.00019 4.1E-09 67.7 12.0 124 37-211 57-185 (366)
34 KOG1446 Histone H3 (Lys4) meth 97.9 0.0017 3.6E-08 61.3 18.3 134 22-206 116-251 (311)
35 TIGR02800 propeller_TolB tol-p 97.8 0.0019 4.1E-08 61.4 18.6 124 27-206 213-340 (417)
36 cd00200 WD40 WD40 domain, foun 97.8 0.0021 4.5E-08 54.1 16.4 128 24-206 153-280 (289)
37 PRK04922 tolB translocation pr 97.8 0.0018 3.9E-08 63.0 18.0 96 27-142 271-369 (433)
38 PRK02889 tolB translocation pr 97.8 0.0026 5.7E-08 61.9 19.0 95 28-142 264-361 (427)
39 PRK01742 tolB translocation pr 97.8 0.0014 3.1E-08 63.7 17.1 96 27-142 227-323 (429)
40 PRK04922 tolB translocation pr 97.8 0.0025 5.3E-08 62.1 18.5 124 27-206 227-354 (433)
41 PRK00178 tolB translocation pr 97.7 0.0014 3.1E-08 63.1 16.3 94 28-141 267-363 (430)
42 PRK04792 tolB translocation pr 97.7 0.0014 3E-08 64.5 16.4 93 28-140 286-381 (448)
43 PRK03629 tolB translocation pr 97.7 0.002 4.4E-08 62.9 17.1 94 28-142 267-364 (429)
44 PRK01029 tolB translocation pr 97.7 0.0059 1.3E-07 59.8 20.0 98 27-140 210-312 (428)
45 KOG0266 WD40 repeat-containing 97.7 0.0014 3.1E-08 64.6 15.4 140 22-215 219-364 (456)
46 KOG0282 mRNA splicing factor [ 97.6 0.00078 1.7E-08 66.7 12.7 146 25-206 277-451 (503)
47 cd00200 WD40 WD40 domain, foun 97.6 0.0033 7.2E-08 52.8 15.0 98 24-142 111-208 (289)
48 KOG0643 Translation initiation 97.6 0.004 8.6E-08 58.3 16.4 159 21-248 67-231 (327)
49 PRK00178 tolB translocation pr 97.6 0.005 1.1E-07 59.4 18.0 93 27-140 222-318 (430)
50 KOG0315 G-protein beta subunit 97.5 0.0045 9.7E-08 57.5 15.0 141 19-206 137-277 (311)
51 TIGR02604 Piru_Ver_Nterm putat 97.5 0.004 8.7E-08 59.6 15.5 69 52-139 15-96 (367)
52 TIGR02800 propeller_TolB tol-p 97.5 0.0075 1.6E-07 57.3 17.1 96 25-141 167-266 (417)
53 PRK01742 tolB translocation pr 97.5 0.0086 1.9E-07 58.3 17.8 93 27-140 183-277 (429)
54 PRK05137 tolB translocation pr 97.5 0.009 2E-07 58.1 17.9 93 27-140 225-321 (435)
55 KOG2096 WD40 repeat protein [G 97.5 0.0023 5E-08 61.1 13.1 151 26-220 207-368 (420)
56 KOG0772 Uncharacterized conser 97.5 0.0023 4.9E-08 64.2 13.4 166 26-251 289-457 (641)
57 COG3386 Gluconolactonase [Carb 97.4 0.0073 1.6E-07 57.2 16.2 111 50-207 162-275 (307)
58 PRK05137 tolB translocation pr 97.4 0.013 2.8E-07 57.0 18.3 94 27-141 181-278 (435)
59 KOG1539 WD repeat protein [Gen 97.4 0.0022 4.7E-08 67.1 13.3 127 22-206 510-636 (910)
60 PRK01029 tolB translocation pr 97.4 0.0057 1.2E-07 60.0 15.8 29 114-142 330-360 (428)
61 KOG2110 Uncharacterized conser 97.4 0.0098 2.1E-07 57.5 16.4 100 25-142 150-249 (391)
62 KOG1407 WD40 repeat protein [F 97.3 0.018 4E-07 53.7 16.8 187 19-266 78-273 (313)
63 PF07995 GSDH: Glucose / Sorbo 97.2 0.018 3.9E-07 54.6 16.1 140 52-233 3-156 (331)
64 KOG0639 Transducin-like enhanc 97.2 0.0029 6.2E-08 63.4 10.8 137 27-214 439-580 (705)
65 KOG2315 Predicted translation 97.1 0.026 5.6E-07 57.0 16.6 124 24-206 246-373 (566)
66 KOG0291 WD40-repeat-containing 97.0 0.013 2.8E-07 61.1 13.7 143 24-206 454-601 (893)
67 PRK04043 tolB translocation pr 97.0 0.064 1.4E-06 52.7 18.1 93 27-140 212-308 (419)
68 PTZ00421 coronin; Provisional 97.0 0.18 4E-06 50.7 21.3 104 21-142 91-199 (493)
69 KOG0293 WD40 repeat-containing 96.9 0.0059 1.3E-07 60.0 9.9 99 21-142 285-385 (519)
70 PRK04043 tolB translocation pr 96.9 0.035 7.6E-07 54.5 15.5 92 26-140 255-356 (419)
71 KOG1446 Histone H3 (Lys4) meth 96.8 0.032 7E-07 52.8 13.7 111 16-142 148-263 (311)
72 KOG2055 WD40 repeat protein [G 96.8 0.061 1.3E-06 53.5 15.9 113 6-140 299-416 (514)
73 PTZ00420 coronin; Provisional 96.7 0.18 3.9E-06 51.7 19.4 103 21-142 90-198 (568)
74 PTZ00420 coronin; Provisional 96.7 0.17 3.7E-06 51.9 19.2 138 29-215 55-197 (568)
75 KOG2096 WD40 repeat protein [G 96.7 0.036 7.8E-07 53.2 12.9 134 27-206 107-247 (420)
76 TIGR02604 Piru_Ver_Nterm putat 96.7 0.07 1.5E-06 51.1 15.0 94 26-131 45-143 (367)
77 KOG2139 WD40 repeat protein [G 96.6 0.077 1.7E-06 51.7 14.8 150 22-205 212-363 (445)
78 KOG0318 WD40 repeat stress pro 96.6 0.18 4E-06 51.0 17.9 157 26-206 255-424 (603)
79 KOG0318 WD40 repeat stress pro 96.6 0.12 2.6E-06 52.3 16.1 123 26-206 382-506 (603)
80 KOG2919 Guanine nucleotide-bin 96.6 0.013 2.8E-07 56.2 9.0 160 24-217 129-329 (406)
81 PF05096 Glu_cyclase_2: Glutam 96.5 0.11 2.3E-06 48.5 14.6 159 9-206 88-249 (264)
82 KOG1407 WD40 repeat protein [F 96.5 0.045 9.7E-07 51.2 11.9 129 22-206 122-250 (313)
83 KOG4378 Nuclear protein COP1 [ 96.4 0.039 8.5E-07 55.5 11.9 135 19-206 134-269 (673)
84 PF08309 LVIVD: LVIVD repeat; 96.4 0.01 2.2E-07 40.4 5.5 37 117-154 6-42 (42)
85 KOG2055 WD40 repeat protein [G 96.4 0.048 1E-06 54.2 12.1 95 30-143 282-376 (514)
86 KOG0266 WD40 repeat-containing 96.4 0.23 5E-06 49.0 17.1 131 22-206 175-307 (456)
87 PF05096 Glu_cyclase_2: Glutam 96.3 0.31 6.8E-06 45.5 16.5 119 9-154 43-167 (264)
88 PF08662 eIF2A: Eukaryotic tra 96.3 0.14 3E-06 44.9 13.7 93 23-140 78-178 (194)
89 COG5276 Uncharacterized conser 96.3 0.19 4.2E-06 48.0 15.1 38 115-155 176-213 (370)
90 TIGR03606 non_repeat_PQQ dehyd 96.2 0.38 8.2E-06 48.2 17.5 95 27-132 50-166 (454)
91 KOG0306 WD40-repeat-containing 96.1 0.068 1.5E-06 55.9 11.6 33 109-142 507-539 (888)
92 PF03022 MRJP: Major royal jel 95.9 0.2 4.3E-06 46.9 13.4 56 26-83 32-96 (287)
93 KOG4499 Ca2+-binding protein R 95.9 0.26 5.7E-06 45.8 13.7 60 189-269 159-218 (310)
94 KOG0293 WD40 repeat-containing 95.9 0.074 1.6E-06 52.5 10.4 71 59-143 231-301 (519)
95 KOG4499 Ca2+-binding protein R 95.8 0.33 7.2E-06 45.2 14.0 90 53-154 160-251 (310)
96 KOG3881 Uncharacterized conser 95.8 0.055 1.2E-06 52.7 9.3 121 11-154 209-330 (412)
97 KOG2919 Guanine nucleotide-bin 95.8 0.064 1.4E-06 51.5 9.4 109 22-146 224-332 (406)
98 TIGR03606 non_repeat_PQQ dehyd 95.7 0.24 5.3E-06 49.5 13.4 78 52-142 31-125 (454)
99 KOG0294 WD40 repeat-containing 95.6 0.38 8.2E-06 46.1 13.8 100 22-142 57-158 (362)
100 COG3823 Glutamine cyclotransfe 95.6 0.37 8E-06 44.1 13.0 67 124-220 187-253 (262)
101 COG4946 Uncharacterized protei 95.5 0.34 7.4E-06 48.8 13.5 99 21-141 375-477 (668)
102 COG4946 Uncharacterized protei 95.5 0.73 1.6E-05 46.6 15.7 59 112-205 403-461 (668)
103 KOG0288 WD40 repeat protein Ti 95.4 0.52 1.1E-05 46.5 14.3 138 19-206 313-450 (459)
104 PF07433 DUF1513: Protein of u 95.3 0.8 1.7E-05 43.7 15.1 121 26-154 75-257 (305)
105 KOG0291 WD40-repeat-containing 95.3 0.55 1.2E-05 49.4 14.8 128 26-206 412-539 (893)
106 PF01731 Arylesterase: Arylest 95.1 0.04 8.7E-07 43.0 4.7 32 111-142 54-85 (86)
107 KOG0771 Prolactin regulatory e 95.1 0.39 8.5E-06 47.1 12.4 31 111-142 282-312 (398)
108 TIGR02276 beta_rpt_yvtn 40-res 95.1 0.084 1.8E-06 34.1 5.5 38 197-255 1-38 (42)
109 PF03088 Str_synth: Strictosid 95.1 0.057 1.2E-06 42.4 5.5 18 189-206 58-75 (89)
110 KOG0286 G-protein beta subunit 95.0 0.89 1.9E-05 43.3 14.2 97 25-140 206-302 (343)
111 PF05694 SBP56: 56kDa selenium 95.0 0.13 2.7E-06 51.3 8.8 74 53-131 312-394 (461)
112 KOG0772 Uncharacterized conser 95.0 0.35 7.6E-06 49.0 11.9 149 21-213 182-345 (641)
113 KOG0263 Transcription initiati 94.9 0.29 6.2E-06 51.1 11.5 98 58-206 541-638 (707)
114 COG0823 TolB Periplasmic compo 94.9 1.1 2.4E-05 44.4 15.3 94 28-140 218-313 (425)
115 KOG0315 G-protein beta subunit 94.9 0.75 1.6E-05 43.1 13.0 107 22-148 14-120 (311)
116 PTZ00421 coronin; Provisional 94.7 0.71 1.5E-05 46.5 13.7 105 22-142 184-291 (493)
117 PF13360 PQQ_2: PQQ-like domai 94.7 2.5 5.4E-05 36.5 16.1 107 25-154 43-150 (238)
118 KOG0278 Serine/threonine kinas 94.7 0.28 6.1E-06 45.9 9.8 95 26-142 203-298 (334)
119 KOG0272 U4/U6 small nuclear ri 94.7 0.55 1.2E-05 46.5 12.3 179 21-274 190-372 (459)
120 COG5276 Uncharacterized conser 94.7 0.53 1.2E-05 45.0 11.7 60 113-206 129-188 (370)
121 KOG0316 Conserved WD40 repeat- 94.6 1.2 2.5E-05 41.6 13.4 152 22-248 75-232 (307)
122 KOG0639 Transducin-like enhanc 94.6 0.077 1.7E-06 53.6 6.2 167 22-215 482-663 (705)
123 KOG0640 mRNA cleavage stimulat 94.5 0.23 5.1E-06 47.7 8.9 102 22-139 188-289 (430)
124 PF01436 NHL: NHL repeat; Int 94.4 0.082 1.8E-06 32.4 4.0 27 111-138 2-28 (28)
125 KOG4497 Uncharacterized conser 94.4 0.26 5.7E-06 47.7 9.1 150 22-206 64-229 (447)
126 KOG0645 WD40 repeat protein [G 94.0 5.8 0.00013 37.6 20.2 101 24-142 33-136 (312)
127 KOG0321 WD40 repeat-containing 93.8 1.3 2.9E-05 45.9 13.3 151 25-206 119-290 (720)
128 KOG1273 WD40 repeat protein [G 93.8 0.67 1.5E-05 44.7 10.4 83 38-143 15-97 (405)
129 PF06977 SdiA-regulated: SdiA- 93.8 2.4 5.2E-05 39.1 14.0 144 27-206 85-239 (248)
130 KOG0275 Conserved WD40 repeat- 93.6 2.8 6E-05 40.7 14.4 152 21-240 321-472 (508)
131 KOG0973 Histone transcription 93.6 0.79 1.7E-05 49.4 11.7 154 12-206 173-344 (942)
132 KOG1520 Predicted alkaloid syn 93.5 0.37 7.9E-06 47.1 8.5 18 189-206 220-237 (376)
133 KOG0646 WD40 repeat protein [G 93.5 0.96 2.1E-05 45.1 11.4 106 26-142 196-308 (476)
134 KOG0303 Actin-binding protein 93.4 3.5 7.6E-05 40.8 14.9 114 15-150 91-209 (472)
135 KOG2111 Uncharacterized conser 93.2 5.4 0.00012 38.4 15.5 77 111-233 182-258 (346)
136 COG3490 Uncharacterized protei 93.2 2.2 4.8E-05 40.8 12.8 95 23-131 86-182 (366)
137 KOG0278 Serine/threonine kinas 93.1 2.5 5.4E-05 39.8 12.8 94 25-142 162-255 (334)
138 KOG0271 Notchless-like WD40 re 93.1 0.76 1.6E-05 45.2 9.8 107 15-142 333-440 (480)
139 KOG1274 WD40 repeat protein [G 93.0 0.74 1.6E-05 49.2 10.2 99 26-141 158-262 (933)
140 COG4257 Vgb Streptogramin lyas 93.0 3.3 7.2E-05 39.5 13.5 139 27-238 82-221 (353)
141 PLN00181 protein SPA1-RELATED; 92.9 7.5 0.00016 40.9 17.9 101 21-142 591-691 (793)
142 PF13360 PQQ_2: PQQ-like domai 92.9 5.7 0.00012 34.2 14.7 105 27-140 85-190 (238)
143 PF07995 GSDH: Glucose / Sorbo 92.8 1.5 3.2E-05 41.6 11.4 66 111-206 2-70 (331)
144 PF13449 Phytase-like: Esteras 92.8 3 6.5E-05 39.4 13.4 72 115-206 89-165 (326)
145 PF11768 DUF3312: Protein of u 92.8 13 0.00028 38.2 19.5 130 25-206 181-318 (545)
146 KOG0263 Transcription initiati 92.7 1.3 2.8E-05 46.4 11.5 101 22-143 551-651 (707)
147 KOG1445 Tumor-specific antigen 92.4 0.43 9.3E-06 49.6 7.4 112 13-142 635-751 (1012)
148 KOG0646 WD40 repeat protein [G 92.0 5.5 0.00012 39.9 14.4 137 22-206 97-236 (476)
149 KOG0279 G protein beta subunit 91.8 1.9 4.2E-05 40.8 10.5 106 22-141 208-313 (315)
150 PF02897 Peptidase_S9_N: Proly 91.6 11 0.00023 36.1 15.8 103 23-142 145-261 (414)
151 KOG1539 WD repeat protein [Gen 91.5 1.3 2.7E-05 47.2 9.8 95 24-139 552-646 (910)
152 KOG0283 WD40 repeat-containing 91.5 3.6 7.8E-05 43.4 13.1 101 28-153 390-490 (712)
153 KOG3881 Uncharacterized conser 91.4 3.6 7.9E-05 40.4 12.2 130 28-206 173-309 (412)
154 KOG2315 Predicted translation 91.1 1.9 4.1E-05 44.0 10.3 95 24-142 290-391 (566)
155 KOG0276 Vesicle coat complex C 91.1 0.86 1.9E-05 47.3 8.0 156 22-206 201-370 (794)
156 smart00135 LY Low-density lipo 91.0 0.51 1.1E-05 30.0 4.3 32 111-142 9-40 (43)
157 KOG0918 Selenium-binding prote 90.9 0.54 1.2E-05 46.4 6.1 71 58-131 317-409 (476)
158 KOG0310 Conserved WD40 repeat- 90.9 7 0.00015 39.3 13.8 103 21-142 83-185 (487)
159 KOG0973 Histone transcription 90.8 4.3 9.4E-05 44.0 13.2 67 60-140 77-158 (942)
160 PLN00181 protein SPA1-RELATED; 90.7 18 0.00038 38.1 17.7 102 21-143 548-650 (793)
161 KOG0271 Notchless-like WD40 re 90.6 1 2.3E-05 44.3 7.8 110 15-142 122-236 (480)
162 KOG1009 Chromatin assembly com 90.6 3.8 8.2E-05 40.5 11.5 103 24-142 32-154 (434)
163 KOG2106 Uncharacterized conser 90.5 6.2 0.00013 40.3 13.2 92 27-144 389-480 (626)
164 PF01731 Arylesterase: Arylest 90.4 0.42 9.2E-06 37.3 4.0 18 189-206 55-72 (86)
165 COG0823 TolB Periplasmic compo 90.3 6.8 0.00015 38.8 13.4 117 7-142 241-359 (425)
166 KOG0286 G-protein beta subunit 90.3 14 0.00031 35.3 14.8 102 22-143 160-261 (343)
167 KOG0310 Conserved WD40 repeat- 90.2 13 0.00028 37.5 15.0 129 21-206 169-298 (487)
168 KOG0322 G-protein beta subunit 90.2 1.9 4.1E-05 40.8 8.7 103 21-142 168-282 (323)
169 TIGR03118 PEPCTERM_chp_1 conse 90.0 19 0.0004 34.8 15.3 113 49-206 136-267 (336)
170 KOG0296 Angio-associated migra 89.8 22 0.00047 35.0 16.6 99 23-142 81-179 (399)
171 KOG2314 Translation initiation 89.7 13 0.00028 38.4 14.8 55 24-81 278-332 (698)
172 KOG0268 Sof1-like rRNA process 89.7 4 8.6E-05 40.1 10.7 140 20-206 81-247 (433)
173 TIGR03032 conserved hypothetic 89.2 4.1 9E-05 39.3 10.4 99 62-207 160-260 (335)
174 PRK13616 lipoprotein LpqB; Pro 89.0 14 0.00031 38.2 15.0 71 57-137 401-472 (591)
175 PF09826 Beta_propel: Beta pro 88.7 5.7 0.00012 40.4 11.8 27 132-158 97-123 (521)
176 KOG0306 WD40-repeat-containing 88.6 8.6 0.00019 40.9 13.0 93 24-140 390-483 (888)
177 KOG0290 Conserved WD40 repeat- 88.4 9.5 0.00021 36.6 12.1 113 15-144 110-230 (364)
178 KOG0283 WD40 repeat-containing 88.4 18 0.00039 38.3 15.2 111 16-142 417-533 (712)
179 PF02333 Phytase: Phytase; In 88.3 28 0.0006 34.4 16.5 151 26-238 76-242 (381)
180 PF02333 Phytase: Phytase; In 88.2 11 0.00025 37.0 13.0 101 40-154 200-301 (381)
181 PF09826 Beta_propel: Beta pro 88.1 3.6 7.8E-05 41.9 9.9 58 114-208 15-72 (521)
182 PF13449 Phytase-like: Esteras 88.1 12 0.00026 35.3 12.9 106 28-142 112-250 (326)
183 TIGR03118 PEPCTERM_chp_1 conse 87.9 27 0.00059 33.7 16.1 146 22-207 38-206 (336)
184 KOG2111 Uncharacterized conser 87.6 11 0.00025 36.3 12.1 104 24-143 155-258 (346)
185 KOG0282 mRNA splicing factor [ 87.5 2.3 5E-05 42.7 7.8 109 28-154 364-472 (503)
186 PF06977 SdiA-regulated: SdiA- 87.4 9.6 0.00021 35.2 11.4 92 109-250 20-113 (248)
187 smart00135 LY Low-density lipo 87.2 1.6 3.5E-05 27.6 4.6 18 189-206 10-27 (43)
188 KOG0289 mRNA splicing factor [ 86.8 29 0.00064 34.9 14.9 129 26-206 323-451 (506)
189 KOG0279 G protein beta subunit 86.8 17 0.00037 34.6 12.7 130 21-206 120-252 (315)
190 COG5354 Uncharacterized protei 86.8 13 0.00029 37.9 12.6 121 28-206 255-378 (561)
191 KOG0294 WD40 repeat-containing 86.8 16 0.00034 35.4 12.6 108 12-142 91-198 (362)
192 KOG0268 Sof1-like rRNA process 86.7 1.6 3.4E-05 42.8 5.9 117 5-142 184-303 (433)
193 PF04053 Coatomer_WDAD: Coatom 86.4 9.2 0.0002 38.2 11.5 58 122-233 117-175 (443)
194 KOG2048 WD40 repeat protein [G 86.1 12 0.00027 39.1 12.3 31 111-142 476-506 (691)
195 KOG4378 Nuclear protein COP1 [ 86.0 7.5 0.00016 39.7 10.5 101 26-146 185-285 (673)
196 KOG1274 WD40 repeat protein [G 85.8 29 0.00064 37.6 15.2 98 21-142 69-169 (933)
197 PF08553 VID27: VID27 cytoplas 85.8 18 0.00038 38.9 13.7 133 22-206 498-637 (794)
198 PF05935 Arylsulfotrans: Aryls 85.6 42 0.0009 33.6 15.9 195 27-245 166-405 (477)
199 KOG2048 WD40 repeat protein [G 85.4 12 0.00027 39.1 11.9 107 58-206 388-494 (691)
200 KOG1034 Transcriptional repres 85.4 17 0.00038 35.3 12.2 110 19-142 55-167 (385)
201 KOG1408 WD40 repeat protein [F 85.4 23 0.00049 37.9 13.9 138 21-206 519-660 (1080)
202 KOG0650 WD40 repeat nucleolar 85.4 14 0.00029 38.6 12.1 146 21-206 415-585 (733)
203 KOG0295 WD40 repeat-containing 84.7 33 0.00071 33.8 13.8 140 20-206 207-353 (406)
204 KOG2314 Translation initiation 84.7 6.2 0.00013 40.7 9.3 71 57-141 450-525 (698)
205 TIGR03300 assembly_YfgL outer 84.2 37 0.0008 31.9 15.6 21 121-142 240-260 (377)
206 PF11768 DUF3312: Protein of u 84.2 21 0.00045 36.8 12.8 96 23-142 231-330 (545)
207 KOG0289 mRNA splicing factor [ 84.0 13 0.00027 37.4 10.9 98 22-141 363-460 (506)
208 COG2133 Glucose/sorbosone dehy 83.9 9.6 0.00021 37.7 10.1 79 113-206 179-257 (399)
209 KOG0288 WD40 repeat protein Ti 83.7 8.7 0.00019 38.2 9.6 34 108-142 339-372 (459)
210 KOG1273 WD40 repeat protein [G 83.7 45 0.00097 32.5 14.1 131 26-206 85-215 (405)
211 KOG0308 Conserved WD40 repeat- 83.7 42 0.0009 35.4 14.8 102 21-142 133-244 (735)
212 KOG1063 RNA polymerase II elon 83.3 2.7 5.8E-05 44.0 6.2 62 110-206 525-591 (764)
213 KOG0265 U5 snRNP-specific prot 83.3 4.7 0.0001 38.6 7.3 101 19-142 146-247 (338)
214 KOG0299 U3 snoRNP-associated p 82.9 56 0.0012 33.0 15.0 63 112-207 382-445 (479)
215 KOG0285 Pleiotropic regulator 82.8 13 0.00027 36.7 10.2 100 22-142 167-266 (460)
216 PF00930 DPPIV_N: Dipeptidyl p 82.6 27 0.00058 33.0 12.5 136 24-207 206-347 (353)
217 KOG2321 WD40 repeat protein [G 82.2 10 0.00023 39.2 9.7 35 108-142 49-83 (703)
218 KOG0267 Microtubule severing p 82.1 2.7 5.9E-05 44.2 5.8 154 22-206 86-257 (825)
219 COG4247 Phy 3-phytase (myo-ino 82.0 39 0.00084 32.2 12.7 72 61-148 64-138 (364)
220 KOG0647 mRNA export protein (c 81.9 22 0.00048 34.2 11.2 71 58-142 33-103 (347)
221 PF03022 MRJP: Major royal jel 81.6 17 0.00037 33.9 10.5 47 90-142 46-97 (287)
222 KOG0292 Vesicle coat complex C 81.5 68 0.0015 35.3 15.6 115 13-142 140-281 (1202)
223 KOG0275 Conserved WD40 repeat- 81.5 29 0.00063 33.9 12.0 100 26-142 368-468 (508)
224 PF00400 WD40: WD domain, G-be 81.1 5 0.00011 24.9 4.8 28 111-139 12-39 (39)
225 PF03088 Str_synth: Strictosid 81.0 2.9 6.3E-05 32.8 4.3 32 111-142 57-88 (89)
226 KOG0296 Angio-associated migra 80.5 19 0.00042 35.3 10.5 96 22-140 302-397 (399)
227 PF07676 PD40: WD40-like Beta 80.4 4.4 9.6E-05 25.8 4.4 21 112-132 10-30 (39)
228 KOG4547 WD40 repeat-containing 80.0 54 0.0012 33.7 14.0 100 22-142 74-173 (541)
229 KOG0270 WD40 repeat-containing 79.9 71 0.0015 32.2 17.7 108 22-152 260-371 (463)
230 KOG2106 Uncharacterized conser 79.9 38 0.00083 34.8 12.7 106 14-139 413-519 (626)
231 PF01436 NHL: NHL repeat; Int 79.6 3 6.6E-05 25.3 3.2 17 189-206 3-19 (28)
232 PRK11138 outer membrane biogen 79.3 57 0.0012 31.1 13.6 21 121-142 255-275 (394)
233 KOG0305 Anaphase promoting com 79.1 62 0.0013 33.0 14.1 134 21-207 316-451 (484)
234 KOG0308 Conserved WD40 repeat- 78.5 19 0.00042 37.8 10.3 105 58-207 123-233 (735)
235 KOG0303 Actin-binding protein 78.3 16 0.00034 36.4 9.3 100 25-142 192-295 (472)
236 KOG0281 Beta-TrCP (transducin 77.8 11 0.00023 37.2 7.9 99 22-142 251-349 (499)
237 KOG2394 WD40 protein DMR-N9 [G 77.5 2.3 5E-05 43.5 3.5 61 111-206 291-351 (636)
238 KOG0305 Anaphase promoting com 76.7 30 0.00066 35.1 11.1 99 24-143 364-463 (484)
239 KOG4328 WD40 protein [Function 74.9 54 0.0012 33.2 12.0 99 24-141 298-399 (498)
240 KOG0319 WD40-repeat-containing 74.5 13 0.00027 39.4 7.9 73 59-150 26-98 (775)
241 KOG0647 mRNA export protein (c 74.4 6 0.00013 38.0 5.2 64 111-206 28-91 (347)
242 COG4257 Vgb Streptogramin lyas 74.2 18 0.00038 34.7 8.1 76 111-240 62-137 (353)
243 COG5354 Uncharacterized protei 74.0 28 0.00062 35.6 10.0 73 52-142 316-396 (561)
244 KOG1036 Mitotic spindle checkp 73.9 21 0.00046 34.2 8.7 141 22-207 149-294 (323)
245 KOG0313 Microtubule binding pr 73.9 32 0.00068 34.1 10.0 100 25-144 278-379 (423)
246 COG4590 ABC-type uncharacteriz 73.8 16 0.00036 37.2 8.2 67 58-130 226-295 (733)
247 KOG0650 WD40 repeat nucleolar 73.1 17 0.00038 37.8 8.3 103 52-206 523-626 (733)
248 KOG0643 Translation initiation 72.9 90 0.0019 29.9 13.5 98 55-206 15-112 (327)
249 KOG0307 Vesicle coat complex C 72.8 11 0.00025 41.3 7.4 121 22-160 178-300 (1049)
250 KOG0272 U4/U6 small nuclear ri 71.7 22 0.00047 35.6 8.4 98 21-138 360-457 (459)
251 KOG0645 WD40 repeat protein [G 71.1 99 0.0021 29.5 18.0 115 21-151 76-190 (312)
252 smart00284 OLF Olfactomedin-li 71.0 91 0.002 29.1 16.4 103 42-154 66-171 (255)
253 KOG2394 WD40 protein DMR-N9 [G 69.6 11 0.00024 38.8 6.0 73 58-150 296-368 (636)
254 PF10647 Gmad1: Lipoprotein Lp 69.6 49 0.0011 30.1 9.9 17 190-206 114-130 (253)
255 KOG4283 Transcription-coupled 69.5 91 0.002 30.3 11.8 146 22-206 118-265 (397)
256 KOG0299 U3 snoRNP-associated p 69.4 56 0.0012 33.0 10.8 99 18-131 338-446 (479)
257 KOG1063 RNA polymerase II elon 69.1 22 0.00047 37.6 8.1 74 58-146 531-607 (764)
258 KOG1332 Vesicle coat complex C 69.0 33 0.00072 32.3 8.6 118 22-142 74-194 (299)
259 PF02897 Peptidase_S9_N: Proly 68.6 31 0.00066 33.0 8.8 60 112-206 125-188 (414)
260 KOG4497 Uncharacterized conser 67.8 30 0.00065 33.9 8.3 79 111-228 92-170 (447)
261 COG4590 ABC-type uncharacteriz 67.5 9.7 0.00021 38.8 5.1 31 110-142 220-250 (733)
262 KOG0302 Ribosome Assembly prot 65.7 47 0.001 33.0 9.3 62 75-148 234-296 (440)
263 PF05567 Neisseria_PilC: Neiss 65.6 50 0.0011 31.6 9.5 106 12-129 165-277 (335)
264 KOG0295 WD40 repeat-containing 65.2 9.3 0.0002 37.5 4.4 31 111-142 335-365 (406)
265 TIGR03300 assembly_YfgL outer 64.6 1.2E+02 0.0027 28.3 13.3 101 27-156 250-350 (377)
266 PRK10115 protease 2; Provision 63.7 2E+02 0.0043 30.3 16.1 30 114-143 175-209 (686)
267 KOG0274 Cdc4 and related F-box 63.4 1.8E+02 0.004 29.8 15.2 105 22-148 222-326 (537)
268 KOG1445 Tumor-specific antigen 62.3 53 0.0011 34.9 9.3 99 24-140 696-797 (1012)
269 KOG1034 Transcriptional repres 62.2 62 0.0013 31.7 9.2 103 22-142 110-212 (385)
270 KOG0640 mRNA cleavage stimulat 62.0 56 0.0012 31.9 8.9 30 113-143 175-204 (430)
271 PF14583 Pectate_lyase22: Olig 61.8 1.7E+02 0.0037 29.0 13.5 15 192-206 355-369 (386)
272 COG2133 Glucose/sorbosone dehy 61.5 1.1E+02 0.0023 30.5 11.1 26 190-230 369-394 (399)
273 PF00930 DPPIV_N: Dipeptidyl p 61.4 49 0.0011 31.3 8.6 86 27-133 259-350 (353)
274 COG4247 Phy 3-phytase (myo-ino 61.4 1.5E+02 0.0034 28.3 14.2 36 112-148 154-193 (364)
275 KOG3914 WD repeat protein WDR4 60.6 97 0.0021 30.7 10.4 98 59-206 69-170 (390)
276 KOG1214 Nidogen and related ba 60.0 52 0.0011 36.0 8.9 115 49-220 1023-1137(1289)
277 COG3204 Uncharacterized protei 59.9 1.7E+02 0.0037 28.2 14.0 106 58-206 91-199 (316)
278 KOG1310 WD40 repeat protein [G 59.8 56 0.0012 34.1 8.9 114 21-143 65-180 (758)
279 TIGR02171 Fb_sc_TIGR02171 Fibr 59.6 36 0.00079 37.1 7.9 79 119-242 316-395 (912)
280 PRK13616 lipoprotein LpqB; Pro 58.2 2.4E+02 0.0051 29.4 13.4 66 52-131 449-516 (591)
281 PF13970 DUF4221: Domain of un 57.6 70 0.0015 30.0 8.9 95 27-130 66-164 (333)
282 PF05787 DUF839: Bacterial pro 57.0 2E+02 0.0043 29.5 12.5 20 111-131 436-455 (524)
283 KOG4659 Uncharacterized conser 56.9 1.6E+02 0.0034 34.0 12.1 83 111-206 407-492 (1899)
284 KOG0264 Nucleosome remodeling 56.3 2.2E+02 0.0048 28.5 13.4 99 26-142 248-348 (422)
285 KOG2395 Protein involved in va 54.9 1.2E+02 0.0027 31.5 10.4 112 22-140 350-499 (644)
286 KOG0319 WD40-repeat-containing 54.6 17 0.00037 38.5 4.5 33 186-239 20-52 (775)
287 KOG0269 WD40 repeat-containing 53.9 1.1E+02 0.0024 33.0 10.1 114 21-154 149-262 (839)
288 KOG0321 WD40 repeat-containing 53.7 66 0.0014 33.9 8.4 120 52-229 51-172 (720)
289 KOG1963 WD40 repeat protein [G 53.5 3.3E+02 0.0071 29.6 13.9 104 26-140 80-188 (792)
290 KOG3914 WD repeat protein WDR4 52.4 72 0.0016 31.6 8.0 28 112-140 153-180 (390)
291 PF15492 Nbas_N: Neuroblastoma 51.9 1.2E+02 0.0026 28.9 9.1 60 116-206 3-62 (282)
292 KOG0270 WD40 repeat-containing 51.8 1.5E+02 0.0033 29.9 10.3 61 23-83 197-274 (463)
293 KOG2139 WD40 repeat protein [G 51.3 2.6E+02 0.0057 27.8 13.8 105 28-138 260-373 (445)
294 KOG0273 Beta-transducin family 50.2 2.2E+02 0.0047 29.2 11.1 94 26-142 296-390 (524)
295 COG3204 Uncharacterized protei 49.4 1.6E+02 0.0034 28.4 9.6 55 93-156 73-127 (316)
296 KOG1520 Predicted alkaloid syn 48.7 53 0.0011 32.4 6.5 64 111-205 219-282 (376)
297 KOG4328 WD40 protein [Function 48.5 3.1E+02 0.0068 27.9 13.3 118 21-142 203-354 (498)
298 PF14298 DUF4374: Domain of un 47.4 1.2E+02 0.0025 30.6 8.8 66 192-268 279-348 (435)
299 KOG0273 Beta-transducin family 46.6 3.4E+02 0.0074 27.8 14.3 94 61-206 418-512 (524)
300 PF12913 SH3_6: SH3 domain of 46.5 17 0.00037 26.0 2.2 22 191-212 30-51 (54)
301 KOG0284 Polyadenylation factor 46.3 1.2E+02 0.0025 30.6 8.4 95 26-141 200-294 (464)
302 PF05428 CRF-BP: Corticotropin 45.9 1E+02 0.0023 29.5 7.8 30 117-146 63-92 (311)
303 KOG0276 Vesicle coat complex C 45.9 4E+02 0.0087 28.4 12.9 109 22-150 71-181 (794)
304 KOG0771 Prolactin regulatory e 45.9 1.3E+02 0.0028 29.9 8.7 69 58-142 287-355 (398)
305 PF04053 Coatomer_WDAD: Coatom 45.3 67 0.0014 32.1 6.9 50 26-83 124-173 (443)
306 KOG1272 WD40-repeat-containing 45.3 39 0.00085 34.3 5.1 100 22-142 225-324 (545)
307 KOG1963 WD40 repeat protein [G 44.6 2E+02 0.0044 31.1 10.5 36 106-142 288-323 (792)
308 KOG0641 WD40 repeat protein [G 43.6 1.8E+02 0.0039 27.3 8.8 101 34-143 16-121 (350)
309 KOG0974 WD-repeat protein WDR6 42.6 3.1E+02 0.0068 30.4 11.6 100 26-143 107-207 (967)
310 PF08116 Toxin_29: PhTx neurot 42.5 11 0.00024 23.8 0.6 11 262-272 3-13 (31)
311 KOG1332 Vesicle coat complex C 42.1 1.7E+02 0.0037 27.7 8.4 108 21-142 178-287 (299)
312 PF08954 DUF1900: Domain of un 42.0 51 0.0011 27.8 4.7 35 113-148 13-47 (136)
313 KOG0264 Nucleosome remodeling 41.9 1.8E+02 0.004 29.1 9.1 110 22-142 289-405 (422)
314 PF15492 Nbas_N: Neuroblastoma 41.9 2.3E+02 0.005 27.0 9.4 70 58-141 3-73 (282)
315 KOG0277 Peroxisomal targeting 41.5 3.2E+02 0.007 26.1 11.8 103 25-146 124-226 (311)
316 KOG1036 Mitotic spindle checkp 41.5 3.4E+02 0.0073 26.3 12.4 56 20-82 27-82 (323)
317 COG4222 Uncharacterized protei 40.3 3.2E+02 0.0068 27.2 10.5 24 183-206 195-218 (391)
318 KOG1188 WD40 repeat protein [G 40.3 1.6E+02 0.0035 28.9 8.2 122 26-160 92-216 (376)
319 TIGR01640 F_box_assoc_1 F-box 39.2 2.6E+02 0.0056 24.3 11.4 105 29-141 119-228 (230)
320 KOG0265 U5 snRNP-specific prot 39.1 3.7E+02 0.008 26.1 13.9 164 15-238 54-222 (338)
321 COG4676 Uncharacterized protei 38.1 76 0.0017 29.3 5.4 65 6-73 103-174 (268)
322 PF09000 Cytotoxic: Cytotoxic; 36.2 81 0.0017 24.8 4.6 42 189-240 30-74 (85)
323 COG2319 FOG: WD40 repeat [Gene 36.1 2.8E+02 0.0061 23.8 16.3 96 27-141 133-229 (466)
324 TIGR02488 flgG_G_neg flagellar 36.1 1.5E+02 0.0032 27.2 7.2 29 114-143 145-179 (259)
325 TIGR02608 delta_60_rpt delta-6 33.9 85 0.0019 22.4 4.1 16 191-206 4-19 (55)
326 TIGR03548 mutarot_permut cycli 33.8 2.6E+02 0.0056 25.8 8.5 60 26-90 137-200 (323)
327 TIGR02171 Fb_sc_TIGR02171 Fibr 33.7 2.9E+02 0.0062 30.5 9.7 29 116-144 355-388 (912)
328 KOG1354 Serine/threonine prote 33.5 84 0.0018 31.0 5.2 83 60-146 221-306 (433)
329 KOG1408 WD40 repeat protein [F 33.5 2.8E+02 0.0061 30.2 9.3 96 26-141 616-713 (1080)
330 COG3211 PhoX Predicted phospha 32.4 6.2E+02 0.013 26.7 12.0 117 53-216 419-574 (616)
331 KOG2445 Nuclear pore complex c 32.2 4.9E+02 0.011 25.4 12.4 110 22-146 29-149 (361)
332 PF04762 IKI3: IKI3 family; I 32.1 7.3E+02 0.016 27.4 14.6 121 56-234 25-153 (928)
333 PF05787 DUF839: Bacterial pro 31.7 1.9E+02 0.004 29.7 7.7 20 112-131 351-370 (524)
334 COG4263 NosZ Nitrous oxide red 31.6 1.1E+02 0.0025 31.3 5.9 24 60-83 329-352 (637)
335 KOG0281 Beta-TrCP (transducin 31.0 1.4E+02 0.003 29.6 6.3 99 21-144 210-308 (499)
336 TIGR03503 conserved hypothetic 30.6 1.6E+02 0.0036 29.0 6.8 85 111-202 28-121 (374)
337 KOG4659 Uncharacterized conser 30.4 9.5E+02 0.021 28.2 16.5 162 16-206 365-551 (1899)
338 PF14870 PSII_BNR: Photosynthe 30.3 2.9E+02 0.0063 26.3 8.3 26 190-215 147-174 (302)
339 PRK12694 flgG flagellar basal 30.2 2.6E+02 0.0057 25.6 7.9 31 113-144 146-182 (260)
340 PF15390 DUF4613: Domain of un 29.8 3.1E+02 0.0068 28.9 8.8 95 76-214 85-185 (671)
341 PF14269 Arylsulfotran_2: Aryl 29.7 4.8E+02 0.01 24.5 10.8 28 112-140 145-172 (299)
342 KOG4547 WD40 repeat-containing 29.5 1.9E+02 0.0041 29.9 7.2 26 190-215 147-172 (541)
343 COG1497 Predicted transcriptio 29.2 1.5E+02 0.0033 27.7 5.9 55 114-168 109-164 (260)
344 COG5167 VID27 Protein involved 29.2 5.3E+02 0.011 27.2 10.2 59 22-86 484-548 (776)
345 COG2319 FOG: WD40 repeat [Gene 29.1 3.7E+02 0.008 23.1 17.2 101 26-142 85-187 (466)
346 PF14583 Pectate_lyase22: Olig 28.9 4.6E+02 0.01 26.0 9.6 26 115-142 85-111 (386)
347 PF08268 FBA_3: F-box associat 28.8 3E+02 0.0065 21.9 11.3 99 25-129 17-120 (129)
348 COG1770 PtrB Protease II [Amin 28.0 7.4E+02 0.016 26.5 11.3 39 112-150 225-266 (682)
349 cd00058 FGF Acidic and basic f 28.0 2.9E+02 0.0064 22.5 7.0 36 190-228 50-85 (123)
350 KOG1214 Nidogen and related ba 27.9 2.7E+02 0.0059 30.8 8.2 69 52-140 1157-1225(1289)
351 cd04480 RPA1_DBD_A_like RPA1_D 27.4 1.6E+02 0.0035 21.9 5.0 64 182-251 17-82 (86)
352 COG3823 Glutamine cyclotransfe 27.3 2.4E+02 0.0051 26.3 6.7 51 26-78 194-254 (262)
353 PF07893 DUF1668: Protein of u 27.1 5.5E+02 0.012 24.4 10.0 28 113-142 179-208 (342)
354 PRK12690 flgF flagellar basal 27.0 2.3E+02 0.005 25.9 6.8 30 113-143 135-164 (238)
355 smart00320 WD40 WD40 repeats. 26.8 1.1E+02 0.0024 16.2 4.0 27 112-139 14-40 (40)
356 COG5170 CDC55 Serine/threonine 25.3 75 0.0016 31.1 3.4 34 111-146 281-314 (460)
357 PF10647 Gmad1: Lipoprotein Lp 25.2 5.1E+02 0.011 23.4 14.1 31 112-142 113-145 (253)
358 PF05935 Arylsulfotrans: Aryls 25.0 4.5E+02 0.0097 26.3 9.0 82 116-240 153-236 (477)
359 KOG0316 Conserved WD40 repeat- 24.6 1.9E+02 0.004 27.4 5.7 51 19-72 240-290 (307)
360 KOG0292 Vesicle coat complex C 24.4 1E+03 0.023 26.7 14.6 119 27-154 339-489 (1202)
361 PLN02193 nitrile-specifier pro 24.3 5.2E+02 0.011 25.6 9.3 59 28-91 343-417 (470)
362 PF06739 SBBP: Beta-propeller 24.2 73 0.0016 20.7 2.2 16 190-206 15-30 (38)
363 cd00216 PQQ_DH Dehydrogenases 23.7 7.3E+02 0.016 24.6 12.6 32 121-156 405-436 (488)
364 PF12791 RsgI_N: Anti-sigma fa 23.2 1.1E+02 0.0024 21.2 3.1 19 114-132 7-25 (56)
365 KOG0267 Microtubule severing p 23.2 1.2E+02 0.0025 32.6 4.5 63 8-75 197-261 (825)
366 PF12234 Rav1p_C: RAVE protein 23.2 9.1E+02 0.02 25.6 12.2 102 24-139 47-154 (631)
367 PF14870 PSII_BNR: Photosynthe 23.1 6.5E+02 0.014 23.9 13.3 21 112-132 146-166 (302)
368 PF02191 OLF: Olfactomedin-lik 22.9 6E+02 0.013 23.3 17.1 104 41-154 60-166 (250)
369 PF11635 Med16: Mediator compl 22.3 3.6E+02 0.0079 28.8 8.1 75 61-141 57-135 (753)
370 KOG0284 Polyadenylation factor 22.3 2.2E+02 0.0047 28.7 5.9 31 112-143 182-212 (464)
371 PF00058 Ldl_recept_b: Low-den 22.2 2.2E+02 0.0049 18.5 4.3 20 123-142 1-21 (42)
372 PRK12693 flgG flagellar basal 21.7 3.6E+02 0.0077 24.6 7.1 29 114-143 147-181 (261)
373 cd00216 PQQ_DH Dehydrogenases 21.6 8E+02 0.017 24.3 17.3 47 27-73 174-237 (488)
374 PF13570 PQQ_3: PQQ-like domai 21.5 1.2E+02 0.0027 19.1 2.9 19 121-140 20-38 (40)
375 KOG0379 Kelch repeat-containin 21.3 7.5E+02 0.016 24.8 9.8 128 28-204 139-280 (482)
376 PRK12691 flgG flagellar basal 20.7 3.6E+02 0.0078 24.7 6.9 29 114-143 147-181 (262)
377 PF14251 DUF4346: Domain of un 20.6 1.3E+02 0.0028 25.0 3.5 46 190-239 9-54 (119)
378 KOG1007 WD repeat protein TSSC 20.6 6.4E+02 0.014 24.6 8.5 103 26-144 142-248 (370)
379 KOG2103 Uncharacterized conser 20.3 4.7E+02 0.01 28.7 8.2 70 59-140 42-111 (910)
380 PRK13684 Ycf48-like protein; P 20.3 5.3E+02 0.011 24.3 8.1 17 190-206 217-233 (334)
381 PRK15308 putative fimbrial pro 20.0 3.7E+02 0.0079 24.7 6.7 33 112-144 21-60 (234)
No 1
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-92 Score=667.13 Aligned_cols=275 Identities=71% Similarity=1.262 Sum_probs=271.8
Q ss_pred CcccccCCCcCCcCCCccccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEE
Q 023927 1 MISSSWGAPLAFTKGFNLQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRF 80 (275)
Q Consensus 1 m~ss~~~~p~~~~~g~~~~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~ 80 (275)
|||||||+|+.+++||++.+++++.|+.++|+|++.++++.|+++|+..|..|++|||+|+|+..++||.|+++++|++|
T Consensus 202 mIstewgap~~~~~gf~~~~v~d~lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~ 281 (476)
T KOG0918|consen 202 MISTEWGAPNALRKGFNPADVEDGLYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRF 281 (476)
T ss_pred EEeecccCchhhhcCCChhHhhccceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeec
Q 023927 81 SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRK 160 (275)
Q Consensus 81 ~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~ 160 (275)
++.++++|.++.++++++.++++|.+++||+..+||.||+|+||||||||.|+.|+||||+||.+++|.+||.+||++.+
T Consensus 282 ~k~~~~tws~~~visvp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~ 361 (476)
T KOG0918|consen 282 FKNSDDTWSAEVVISVPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQK 361 (476)
T ss_pred eeccccccceeEEEecCccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeec
Confidence 99877999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCee
Q 023927 161 GSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 240 (275)
Q Consensus 161 ~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~ 240 (275)
+++|+|++++.+..++++..++|++++|||+|||||.|||||||+|||||+||+|||||++++|++|+++|||+++|+|+
T Consensus 362 ~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g~~~ 441 (476)
T KOG0918|consen 362 GSPVKVLEEEGLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKGGLS 441 (476)
T ss_pred CCceEEeccccccCCCccceecCccccCCceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 023927 241 INPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 275 (275)
Q Consensus 241 ~~~~f~vdf~~~~~g~~~~h~~r~~ggd~~sd~~~ 275 (275)
+|++|+|||++||+||++||||||||||||||||+
T Consensus 442 lN~~flvDf~~ep~gPsL~hemRypggdCtsdiwi 476 (476)
T KOG0918|consen 442 LNPDFLVDFGKEPDGPSLAHEMRYPGGDCTSDIWI 476 (476)
T ss_pred eCccceEEccCCCCCcchhhhcccCCCcccccccC
Confidence 99999999999999999999999999999999997
No 2
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=100.00 E-value=1.2e-90 Score=666.47 Aligned_cols=260 Identities=65% Similarity=1.186 Sum_probs=182.5
Q ss_pred CcccccCCCcCCcCCCccccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEE
Q 023927 1 MISSSWGAPLAFTKGFNLQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRF 80 (275)
Q Consensus 1 m~ss~~~~p~~~~~g~~~~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~ 80 (275)
|||||||+|++|..||+++++.+++||++||||||+++|++|+++||++|..|+||||+|+|+..++||+|+|+|+||+|
T Consensus 195 MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 195 MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred EEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCeeEEEEEEecCccccccccCCC-------CCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 023927 81 SKTQDGSWNHEVAISVKSLKVQNWILPEM-------PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 153 (275)
Q Consensus 81 ~~~~~G~~~~~~vi~i~~~~~~g~~~~~~-------~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~ 153 (275)
+++++|+|.+++||+++++++++|.+|+| |+.++||.||.|+||||||||+||.|+||||+||.+|||+++|.
T Consensus 275 ~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~ 354 (461)
T PF05694_consen 275 YKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVF 354 (461)
T ss_dssp EE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE
T ss_pred EEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEE
Confidence 99889999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred ecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEee
Q 023927 154 VGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 233 (275)
Q Consensus 154 ~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d 233 (275)
+||++.++ +++.++|+++.|+|+|++||.|||||||||||||+||+||||+|+++|++|+++|+|
T Consensus 355 lGG~~~~~---------------~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLys~WD~qfYP~~~~~g~~m~~iDvd 419 (461)
T PF05694_consen 355 LGGSIRKG---------------DHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLYSAWDKQFYPDGVKNGSWMLKIDVD 419 (461)
T ss_dssp -BTTTT-B-----------------TTS------S----EEE-TTSSEEEEE----HHHHHHHSTT------EEEEEEE-
T ss_pred ECcEeccC---------------CCccccccccCCCCCeEEEccCCeEEEEEeecccccccccCCCccccccEEEEEEec
Confidence 99998663 345678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeccceeEecCCCCCCCcceeeeecCCCCcCccccC
Q 023927 234 SEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 275 (275)
Q Consensus 234 ~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~ggd~~sd~~~ 275 (275)
+++|+|++|++|+|||++||+||+|||||||||||||||||+
T Consensus 420 ~~~Ggl~l~~~F~VDFg~ep~Gp~raHe~R~pgGDctSDi~~ 461 (461)
T PF05694_consen 420 TENGGLTLDEDFLVDFGKEPDGPARAHEMRYPGGDCTSDIWC 461 (461)
T ss_dssp TT-S-EEEEEEEEEE-TT-----SEEEEEEETT--TTT---S
T ss_pred CCCCceeeCccceecccccccccccceeeecCCCCccccccC
Confidence 999999999999999999999999999999999999999996
No 3
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-36 Score=282.39 Aligned_cols=177 Identities=22% Similarity=0.315 Sum_probs=149.9
Q ss_pred CCCcccc---ccCCccCCeEEEEECCCCCeeE--EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-CCC
Q 023927 14 KGFNLQH---VSDGLYGRHLFVYSWPDGELKQ--TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-DGS 87 (275)
Q Consensus 14 ~g~~~~~---~~~g~~~d~I~v~d~~~~k~~~--~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-~G~ 87 (275)
..|.|+. ++.....|+|.+|+++.+++.. ...+ ++|+|||||+| ||++++||++|||+|+|.++.|+. .|+
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~F--Hpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVF--HPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEE--cCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 4556655 2446789999999999988766 3445 67999999987 999999999999999999999875 599
Q ss_pred eeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC-CCCeEEEEEEecceeecCCceee
Q 023927 88 WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVA 166 (275)
Q Consensus 88 ~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~-~~~~lv~~v~~gG~~~~~~~~~v 166 (275)
++..|++.+.|++|.|. +.+|||+||+||||||||||+||+|++|.|+.. +++.+++.++++
T Consensus 227 ~~~lQ~i~tlP~dF~g~------~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te----------- 289 (346)
T COG2706 227 FEELQTIDTLPEDFTGT------NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE----------- 289 (346)
T ss_pred EEEeeeeccCccccCCC------CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-----------
Confidence 99999999999999986 788999999999999999999999999999664 456677777774
Q ss_pred ecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCee-eccce
Q 023927 167 VTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA-INPNF 245 (275)
Q Consensus 167 ~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~-~~~~f 245 (275)
|.. ||+|+|+++|++|+||| |. ||+.++|+| |++||.|+ +...+
T Consensus 290 ----------------g~~----PR~F~i~~~g~~Liaa~--------q~-----sd~i~vf~~--d~~TG~L~~~~~~~ 334 (346)
T COG2706 290 ----------------GQF----PRDFNINPSGRFLIAAN--------QK-----SDNITVFER--DKETGRLTLLGRYA 334 (346)
T ss_pred ----------------CcC----CccceeCCCCCEEEEEc--------cC-----CCcEEEEEE--cCCCceEEeccccc
Confidence 454 99999999999999999 87 788777777 77999997 44333
No 4
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.97 E-value=1.5e-30 Score=244.86 Aligned_cols=167 Identities=25% Similarity=0.381 Sum_probs=135.6
Q ss_pred cCCccCCeEEEEECCCCC--eeE--EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEEEEEe
Q 023927 22 SDGLYGRHLFVYSWPDGE--LKQ--TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISV 96 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k--~~~--~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~vi~i 96 (275)
+.....|+|++|+++..+ +.. .+.+ +.|+||||++| ||+++++||++|++++|.+|.++ ++|.++..+.+.+
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAF--SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE---TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEE--cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 445678999999999875 533 5677 47999999987 99999999999999999999987 6789999999988
Q ss_pred cCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC-CCCCeEEEEEEecceeecCCceeeecCCCCCCC
Q 023927 97 KSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQ 175 (275)
Q Consensus 97 ~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~-~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~ 175 (275)
.+..+.+. +.+++|+|||||||||||||++|+|++|+++. .+++++++.++++
T Consensus 237 ~~~~~~~~------~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-------------------- 290 (345)
T PF10282_consen 237 LPEGFTGE------NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-------------------- 290 (345)
T ss_dssp CETTSCSS------SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--------------------
T ss_pred cccccccc------CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--------------------
Confidence 77665543 58899999999999999999999999999944 4678888888875
Q ss_pred CCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeecc
Q 023927 176 SDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINP 243 (275)
Q Consensus 176 ~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~ 243 (275)
|+. ||+|++||||++||||| |. ++..++| ++|+++|.|+...
T Consensus 291 -------G~~----Pr~~~~s~~g~~l~Va~--------~~-----s~~v~vf--~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 291 -------GKF----PRHFAFSPDGRYLYVAN--------QD-----SNTVSVF--DIDPDTGKLTPVG 332 (345)
T ss_dssp -------SSS----EEEEEE-TTSSEEEEEE--------TT-----TTEEEEE--EEETTTTEEEEEE
T ss_pred -------CCC----ccEEEEeCCCCEEEEEe--------cC-----CCeEEEE--EEeCCCCcEEEec
Confidence 455 99999999999999999 86 5555555 5588999997443
No 5
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.91 E-value=3.7e-23 Score=191.31 Aligned_cols=170 Identities=16% Similarity=0.231 Sum_probs=129.7
Q ss_pred cCCccCCeEEEEECCCCC-eeE----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-CCCeeEEEEEE
Q 023927 22 SDGLYGRHLFVYSWPDGE-LKQ----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAIS 95 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k-~~~----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-~G~~~~~~vi~ 95 (275)
+.+...++|.+||+++.+ +.+ .+.+ +.|.+|++++| +|+|+++||++|++++|.++..+. +|.++..+.+.
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~--~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVF--HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEE--CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 456677999999998743 321 2344 34789999877 999999999999999999998864 56776666665
Q ss_pred ecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC-CCCeEEEEEEecceeecCCceeeecCCCCCC
Q 023927 96 VKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPY 174 (275)
Q Consensus 96 i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~-~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~ 174 (275)
..|....+ +..+++|++|||||||||+||++++|++|+++.. ...++++.+.+
T Consensus 219 ~~p~~~~~------~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-------------------- 272 (330)
T PRK11028 219 MMPADFSD------TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-------------------- 272 (330)
T ss_pred cCCCcCCC------CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--------------------
Confidence 44443332 1466899999999999999999999999999653 34567777765
Q ss_pred CCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeE
Q 023927 175 QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFV 247 (275)
Q Consensus 175 ~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~v 247 (275)
|.. ||.|+++|||++||||| |. ++...++++ |.++|.|+....|.+
T Consensus 273 --------~~~----p~~~~~~~dg~~l~va~--------~~-----~~~v~v~~~--~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 273 --------ETQ----PRGFNIDHSGKYLIAAG--------QK-----SHHISVYEI--DGETGLLTELGRYAV 318 (330)
T ss_pred --------ccc----CCceEECCCCCEEEEEE--------cc-----CCcEEEEEE--cCCCCcEEEcccccc
Confidence 333 99999999999999999 64 444555544 678999987666655
No 6
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.72 E-value=1.6e-15 Score=142.89 Aligned_cols=186 Identities=18% Similarity=0.279 Sum_probs=126.2
Q ss_pred cCCccCCeEEEEECCCC-CeeEE---EEC--------CCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC-CCe
Q 023927 22 SDGLYGRHLFVYSWPDG-ELKQT---LDL--------GNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD-GSW 88 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~-k~~~~---i~L--------g~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~-G~~ 88 (275)
++++.+..|.+|++++. ++... +.. ...+..|-++. ++|+++++||.+--...|++|..+.+ +.+
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 56677899999999984 43332 221 01234455555 49999999999888889999988643 467
Q ss_pred eEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC-CCCCeEEEEEEecceeecCCceeee
Q 023927 89 NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAV 167 (275)
Q Consensus 89 ~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~-~~~~~lv~~v~~gG~~~~~~~~~v~ 167 (275)
+....+.+++ +..|-.|+++|||++|||.|-..++|.+|+++. .++.+.++.+.+...
T Consensus 181 ~~~~~~~~~~-----------G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~---------- 239 (345)
T PF10282_consen 181 TPVDSIKVPP-----------GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE---------- 239 (345)
T ss_dssp EEEEEEECST-----------TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET----------
T ss_pred EEeecccccc-----------CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc----------
Confidence 7755555543 257899999999999999999999999999973 344556666654211
Q ss_pred cCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeE
Q 023927 168 TDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFV 247 (275)
Q Consensus 168 ~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~v 247 (275)
...|.. .|..++||||||+|||+| . ..++|..+++|+++|.|++-+.+..
T Consensus 240 ------------~~~~~~---~~~~i~ispdg~~lyvsn--------r-------~~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 240 ------------GFTGEN---APAEIAISPDGRFLYVSN--------R-------GSNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp ------------TSCSSS---SEEEEEE-TTSSEEEEEE--------C-------TTTEEEEEEECTTTTTEEEEEEEEE
T ss_pred ------------cccccC---CceeEEEecCCCEEEEEe--------c-------cCCEEEEEEEecCCCceEEEEEEeC
Confidence 112331 499999999999999999 3 3556666677889999986555433
Q ss_pred ecCCCCCCCcceeeeec-CCC
Q 023927 248 DFEAEPDGPALAHEMRY-PGG 267 (275)
Q Consensus 248 df~~~~~g~~~~h~~r~-~gg 267 (275)
+ | ..++.|.+ |.|
T Consensus 290 --~----G-~~Pr~~~~s~~g 303 (345)
T PF10282_consen 290 --G----G-KFPRHFAFSPDG 303 (345)
T ss_dssp --S----S-SSEEEEEE-TTS
T ss_pred --C----C-CCccEEEEeCCC
Confidence 1 2 34666666 444
No 7
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=9.1e-15 Score=135.31 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=109.3
Q ss_pred CccCCeEEEEECCC-CCee--EEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 24 GLYGRHLFVYSWPD-GELK--QTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 24 g~~~d~I~v~d~~~-~k~~--~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+.....|.+|+++. +++. .++.++ ..|.++.| +|+++++|++++.++.|.+|..+++|.... .+...
T Consensus 53 ~~~~~~i~~~~~~~~g~l~~~~~~~~~---~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~--~~~~~--- 122 (330)
T PRK11028 53 VRPEFRVLSYRIADDGALTFAAESPLP---GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA--PIQII--- 122 (330)
T ss_pred ECCCCcEEEEEECCCCceEEeeeecCC---CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC--ceeec---
Confidence 34568899999974 4443 234332 36888776 999999999999999999998765664422 11111
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcc
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE 180 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~ 180 (275)
.+ ...|..+.++||||+|||+|.+.|.|++|+++.. .++...... ....
T Consensus 123 -~~------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--g~l~~~~~~----------------------~~~~ 171 (330)
T PRK11028 123 -EG------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--GHLVAQEPA----------------------EVTT 171 (330)
T ss_pred -cC------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC--CcccccCCC----------------------ceec
Confidence 11 1356778899999999999999999999999542 222110000 0011
Q ss_pred ccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeecc
Q 023927 181 VQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINP 243 (275)
Q Consensus 181 ~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~ 243 (275)
+.|.. ||+++++|||++|||+| + ....+..+|++..+|.+++..
T Consensus 172 ~~g~~----p~~~~~~pdg~~lyv~~--------~-------~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 172 VEGAG----PRHMVFHPNQQYAYCVN--------E-------LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCCCC----CceEEECCCCCEEEEEe--------c-------CCCEEEEEEEeCCCCCEEEEE
Confidence 23555 99999999999999999 4 245666677776778776443
No 8
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=6.9e-13 Score=127.33 Aligned_cols=181 Identities=15% Similarity=0.210 Sum_probs=109.9
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
....++|.|+|.++.+.+.+++.+. .+ |...+|+|||+++||.+- ++.|.++... + .+ .+.++.
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~---~~-h~~~~~s~Dgr~~yv~~r-dg~vsviD~~-~--~~--~v~~i~------ 75 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGG---AP-HAGLKFSPDGRYLYVANR-DGTVSVIDLA-T--GK--VVATIK------ 75 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-ST---TE-EEEEE-TT-SSEEEEEET-TSEEEEEETT-S--SS--EEEEEE------
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCC---Cc-eeEEEecCCCCEEEEEcC-CCeEEEEECC-c--cc--EEEEEe------
Confidence 3567899999999999999998753 33 655567999999999975 6788888642 1 21 222332
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceee------------c-C---------
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFR------------K-G--------- 161 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~------------~-~--------- 161 (275)
++..|-.|.+|+|||+|||+|+..++|+++|. .+++++.+|++++.-. + .
T Consensus 76 -----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~---~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 76 -----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDA---ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp ------SSEEEEEEE--TTTEEEEEEEETTEEEEEET---TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -----cCCCcceEEEcCCCCEEEEEecCCCceeEecc---ccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 22567899999999999999999999999996 4588888888875321 0 1
Q ss_pred --CceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCe
Q 023927 162 --SPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 239 (275)
Q Consensus 162 --~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l 239 (275)
+.|-+++-...+........-|+. |.++.++|||||+|+|+ +. + ..|..+ |.+++++
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~----~~D~~~dpdgry~~va~--------~~-----s--n~i~vi--D~~~~k~ 206 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRF----PHDGGFDPDGRYFLVAA--------NG-----S--NKIAVI--DTKTGKL 206 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TT----EEEEEE-TTSSEEEEEE--------GG-----G--TEEEEE--ETTTTEE
T ss_pred cCCeEEEEEeccccccceeeeccccc----ccccccCcccceeeecc--------cc-----c--ceeEEE--eeccceE
Confidence 111122100000000112224565 99999999999999987 32 2 366666 4577876
Q ss_pred eeccceeEecCCCC
Q 023927 240 AINPNFFVDFEAEP 253 (275)
Q Consensus 240 ~~~~~f~vdf~~~~ 253 (275)
.. .+|-++.|
T Consensus 207 v~----~i~~g~~p 216 (369)
T PF02239_consen 207 VA----LIDTGKKP 216 (369)
T ss_dssp EE----EEE-SSSB
T ss_pred EE----Eeeccccc
Confidence 42 46666643
No 9
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=4.3e-11 Score=114.69 Aligned_cols=113 Identities=10% Similarity=0.028 Sum_probs=90.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec---------cCCcEEEEEeCCCCCeeEEEEEEec
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA---------LASTMVRFSKTQDGSWNHEVAISVK 97 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e---------L~stV~~~~~~~~G~~~~~~vi~i~ 97 (275)
.++|+|+|.++++.+.++++|. .|+++ + +||++.+||.+- -+..|.++.- + +++....+.++
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~---~P~~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D~-~--t~~~~~~i~~p 96 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGF---LPNPV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVIDP-Q--THLPIADIELP 96 (352)
T ss_pred CceEEEEECCCCEEEEEEEccC---CCcee-E--CCCCCEEEEEeccccccccCCCCCEEEEEEC-c--cCcEEeEEccC
Confidence 4899999999999999999865 88875 4 999999999988 5667777753 2 45556666666
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCC-CCcEEEEEecCCCCCeEEEEEEecc
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGG 156 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg-~~sIavfdI~~~~~~~lv~~v~~gG 156 (275)
++.... ++..+..+.+|||||+|||+|+. .++|+++|+. +.+++++|++++
T Consensus 97 ~~p~~~-----~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~---~~kvv~ei~vp~ 148 (352)
T TIGR02658 97 EGPRFL-----VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE---GKAFVRMMDVPD 148 (352)
T ss_pred CCchhh-----ccCccceEEECCCCCEEEEecCCCCCEEEEEECC---CCcEEEEEeCCC
Confidence 542210 23678899999999999999998 8999999984 478899999876
No 10
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=6.7e-11 Score=111.99 Aligned_cols=193 Identities=16% Similarity=0.202 Sum_probs=123.8
Q ss_pred CCeEEEEECCCC----CeeEEEECCCCCccceEEEEEeCCCCCEEEEeecc--CCcEEEEEeCC-CCCeeEEEEEEecCc
Q 023927 27 GRHLFVYSWPDG----ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCAL--ASTMVRFSKTQ-DGSWNHEVAISVKSL 99 (275)
Q Consensus 27 ~d~I~v~d~~~~----k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL--~stV~~~~~~~-~G~~~~~~vi~i~~~ 99 (275)
+.-|++|++++. ++++.+.- -.-|--|++ +|+++++|+++|- .+.|..|..+. +|.++..-...++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~---~~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-- 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAE---LGNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-- 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccc---cCCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--
Confidence 678999999953 23332221 123444454 9999999999998 88999998874 5988776555443
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEE-EEEEecceee---------------cCC-
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT-GQIWVGGLFR---------------KGS- 162 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv-~~v~~gG~~~---------------~~~- 162 (275)
| +.|+-|.+++||||||++|-..++|++|.+++.+.+..+ +.+.--|.-| -++
T Consensus 88 ---g-------~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 88 ---G-------SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred ---C-------CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 1 455899999999999999999999999999775544433 4333222200 011
Q ss_pred ceeeec------------CCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEE
Q 023927 163 PVVAVT------------DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQI 230 (275)
Q Consensus 163 ~~~v~~------------~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~ 230 (275)
-|-|++ +..|..+-.....+|. |||++++.|+||+.|+.| +- ++++...
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~----GPRHi~FHpn~k~aY~v~--------EL-------~stV~v~ 218 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA----GPRHIVFHPNGKYAYLVN--------EL-------NSTVDVL 218 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccCCCC----CcceEEEcCCCcEEEEEe--------cc-------CCEEEEE
Confidence 111111 1122222222333444 699999999999999999 42 3344434
Q ss_pred EeeCCCCCee-ecc--ceeEecCCCCCC
Q 023927 231 DVNSEKGGMA-INP--NFFVDFEAEPDG 255 (275)
Q Consensus 231 d~d~~~G~l~-~~~--~f~vdf~~~~~g 255 (275)
..|+..|+++ ++. --.-||.+.+.+
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCce
Confidence 5577788885 433 333488775444
No 11
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.27 E-value=8.9e-10 Score=97.17 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=105.9
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
+..+++||..+++.+..+..+ ..|.++.| +|+++++|++++.+++|.++... +++ ....+........
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~--s~dg~~l~~~~~~~~~v~i~d~~-~~~--~~~~~~~~~~~~~---- 203 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDNVLVD---QRPRFAEF--TADGKELWVSSEIGGTVSVIDVA-TRK--VIKKITFEIPGVH---- 203 (300)
T ss_pred CCeEEEEeCCCCeEEEEEEcC---CCccEEEE--CCCCCEEEEEcCCCCEEEEEEcC-cce--eeeeeeecccccc----
Confidence 346778898887776655443 36776655 99999999999888888887652 232 2222322211111
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCccc
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL 186 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~ 186 (275)
+....+..|.+||||+++|++....+.|++||+.. .+++..+.. |..
T Consensus 204 -~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~----------------------------~~~- 250 (300)
T TIGR03866 204 -PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLV----------------------------GQR- 250 (300)
T ss_pred -cccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEe----------------------------CCC-
Confidence 01134678999999999999999899999999843 455444433 223
Q ss_pred CCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 023927 187 RGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG 255 (275)
Q Consensus 187 ~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~~g 255 (275)
|..++++|||++||++| + ....+..+|. ++|.+ -..+. +++.|.|
T Consensus 251 ---~~~~~~~~~g~~l~~~~--------~-------~~~~i~v~d~--~~~~~--~~~~~--~~~~~~~ 295 (300)
T TIGR03866 251 ---VWQLAFTPDEKYLLTTN--------G-------VSNDVSVIDV--AALKV--IKSIK--VGRLPWG 295 (300)
T ss_pred ---cceEEECCCCCEEEEEc--------C-------CCCeEEEEEC--CCCcE--EEEEE--cccccce
Confidence 88999999999999998 3 2335555655 66664 22233 3577776
No 12
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.26 E-value=3.5e-10 Score=108.69 Aligned_cols=206 Identities=15% Similarity=0.150 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEec---------
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK--------- 97 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~--------- 97 (275)
...|.+||+.++|++.+++++. .|+++++ +|||+++||+|...++|.++.-. +++..+.|.+.
T Consensus 57 dg~vsviD~~~~~~v~~i~~G~---~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~---tle~v~~I~~~~~~~~~~~~ 128 (369)
T PF02239_consen 57 DGTVSVIDLATGKVVATIKVGG---NPRGIAV--SPDGKYVYVANYEPGTVSVIDAE---TLEPVKTIPTGGMPVDGPES 128 (369)
T ss_dssp TSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETTEEEEEETT---T--EEEEEE--EE-TTTS--
T ss_pred CCeEEEEECCcccEEEEEecCC---CcceEEE--cCCCCEEEEEecCCCceeEeccc---cccceeecccccccccccCC
Confidence 4589999999999999999865 8998876 99999999999999999999732 34444433221
Q ss_pred ---------Ccc-c------cc--ccc------------CCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCe
Q 023927 98 ---------SLK-V------QN--WIL------------PEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV 147 (275)
Q Consensus 98 ---------~~~-~------~g--~~~------------~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~ 147 (275)
..+ + .+ |.+ .+++..+.|..++|||||+|+++..+|.|+++|. .+.+
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~---~~~k 205 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT---KTGK 205 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET---TTTE
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEee---ccce
Confidence 110 0 00 000 0377889999999999999999999999999996 3467
Q ss_pred EEEEEEecceee----------cCCc-----------eeeecCCCCCCCC--CCccccCcccCCCCceEEECCCCCEEEE
Q 023927 148 LTGQIWVGGLFR----------KGSP-----------VVAVTDDGQPYQS--DVPEVQGHRLRGGPQMIQLSLDGKRLYV 204 (275)
Q Consensus 148 lv~~v~~gG~~~----------~~~~-----------~~v~~~~~~~~~~--~~~~~~G~~~~g~Pr~~~LSpDGk~LyV 204 (275)
++..+.+|-.-. ..++ +..+..++..-.. .-..++=-.+.|+|-.+..+||+++|||
T Consensus 206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwv 285 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWV 285 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEE
T ss_pred EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEe
Confidence 777777642211 0111 1334333333111 1122222334567866788999999999
Q ss_pred EeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecC
Q 023927 205 TNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYP 265 (275)
Q Consensus 205 ANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~ 265 (275)
.+.|- .+..+|..||. +|- ++...+....++ ++.+|+|-
T Consensus 286 d~~~~------------~~~~~v~viD~--~tl--~~~~~i~~~~~~------~~~h~ef~ 324 (369)
T PF02239_consen 286 DTFLN------------PDADTVQVIDK--KTL--KVVKTITPGPGK------RVVHMEFN 324 (369)
T ss_dssp E-TT-------------SSHT-EEEEEC--CGT--EEEE-HHHHHT--------EEEEEE-
T ss_pred eccCC------------CCCceEEEEEC--cCc--ceeEEEeccCCC------cEeccEEC
Confidence 95211 23457777866 333 333333322222 57777774
No 13
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=6.5e-10 Score=106.62 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=103.2
Q ss_pred cCCcc-CCeEEEEECCCCCeeEEEECCCC-----------------Cccce---------EEE--EEeC-----------
Q 023927 22 SDGLY-GRHLFVYSWPDGELKQTLDLGNT-----------------GLIPL---------EIR--FLHD----------- 61 (275)
Q Consensus 22 ~~g~~-~d~I~v~d~~~~k~~~~i~Lg~~-----------------G~gP~---------~v~--f~f~----------- 61 (275)
+.+.. .+.|.++|+.++|.+.+++++.- |..-. ..+ -+|+
T Consensus 121 V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 121 FYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence 44545 78999999999999988887421 00000 000 0122
Q ss_pred --C-CCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc--ccccccCCCCCceeEEEEcCCCCEEEEEe-------
Q 023927 62 --P-SKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK--VQNWILPEMPGLITDFLISLDDRFLYFSN------- 129 (275)
Q Consensus 62 --P-~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~--~~g~~~~~~~~~~adI~iSpDgrfLYVSN------- 129 (275)
+ +++++||++| ++|.++....++ -...+.+.+.... -+||. |...--|.+++||++|||++
T Consensus 201 ~~~~dg~~~~vs~e--G~V~~id~~~~~-~~~~~~~~~~~~~~~~~~wr----P~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 201 YSNKSGRLVWPTYT--GKIFQIDLSSGD-AKFLPAIEAFTEAEKADGWR----PGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred eEcCCCcEEEEecC--CeEEEEecCCCc-ceecceeeeccccccccccC----CCcceeEEEcCCCCEEEEEecCCcccc
Confidence 2 8899999988 888888753322 2223333332211 12441 12222299999999999954
Q ss_pred --CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCC-EEEEEe
Q 023927 130 --WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK-RLYVTN 206 (275)
Q Consensus 130 --rg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk-~LyVAN 206 (275)
.+.+.|+++|. .+.+.+.++.+ |+. |..+++||||| +|||+|
T Consensus 274 hk~~~~~V~ViD~---~t~kvi~~i~v----------------------------G~~----~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 274 HKTASRFLFVVDA---KTGKRLRKIEL----------------------------GHE----IDSINVSQDAKPLLYALS 318 (352)
T ss_pred ccCCCCEEEEEEC---CCCeEEEEEeC----------------------------CCc----eeeEEECCCCCeEEEEeC
Confidence 23379999996 45888888887 444 99999999999 999999
Q ss_pred CCCCCcccccccccccCCcEEEEEEeeCCCCCe
Q 023927 207 SLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 239 (275)
Q Consensus 207 sl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l 239 (275)
+. +..+..|| .+++++
T Consensus 319 --------~~-------s~~VsViD--~~t~k~ 334 (352)
T TIGR02658 319 --------TG-------DKTLYIFD--AETGKE 334 (352)
T ss_pred --------CC-------CCcEEEEE--CcCCeE
Confidence 42 34455675 477865
No 14
>PRK02888 nitrous-oxide reductase; Validated
Probab=99.19 E-value=7.9e-10 Score=112.16 Aligned_cols=197 Identities=15% Similarity=0.187 Sum_probs=131.8
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEee---ccCCcEEEEEeC-----------------
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGC---ALASTMVRFSKT----------------- 83 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~---eL~stV~~~~~~----------------- 83 (275)
.+|..-++++|.++.+.+.++.++. -|+.+.+ +|+|+++|+.| |.+.++..+...
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~--spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~v 285 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDT--DYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAV 285 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC---CcccceE--CCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhh
Confidence 5699999999999999888898865 7888776 99999999998 887777666221
Q ss_pred CCCCeeE---EEEEEecCcc-----ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCC---------C
Q 023927 84 QDGSWNH---EVAISVKSLK-----VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN---------P 146 (275)
Q Consensus 84 ~~G~~~~---~~vi~i~~~~-----~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~---------~ 146 (275)
++|+... ..+..++... ..-...-++|..|-.|.+|||||+|||+|...++|+|+|++.-.. -
T Consensus 286 kdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 286 KAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred hCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 1333221 2244455443 111122258999999999999999999999999999999955211 1
Q ss_pred eEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeC---CCCCccccc----ccc
Q 023927 147 VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS---LFSAWDCQF----YPE 219 (275)
Q Consensus 147 ~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANs---l~~~wd~Q~----yp~ 219 (275)
.+++++.+ |.. |.+-+++++|+ .|++=. -.-+|+-+. |-.
T Consensus 366 ~vvaevev----------------------------GlG----PLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g 412 (635)
T PRK02888 366 AVVAEPEL----------------------------GLG----PLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKG 412 (635)
T ss_pred eEEEeecc----------------------------CCC----cceEEECCCCC-EEEeEeecceeEEEehHHHHHHhcc
Confidence 23444443 554 99999999996 777532 234577542 111
Q ss_pred cccCCcEEE-EEEeeCCCCCee--------eccceeEecCC------CCCCCccee
Q 023927 220 LKEKGSHML-QIDVNSEKGGMA--------INPNFFVDFEA------EPDGPALAH 260 (275)
Q Consensus 220 ~~~~~~~~~-~~d~d~~~G~l~--------~~~~f~vdf~~------~~~g~~~~h 260 (275)
++...++ ++||--.-|.+. .+.+|+|=++| +|-||..+.
T Consensus 413 --~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe 466 (635)
T PRK02888 413 --EKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPE 466 (635)
T ss_pred --ccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCC
Confidence 1122344 466654445442 46678886665 678887664
No 15
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.18 E-value=5e-09 Score=92.39 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=91.4
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
.....|.+||+++++.++++.... .|+.+.| +|+++++|+.+..+++|.++.. .++.. .. .+.. +
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~-~~~~~--~~--~~~~----~- 72 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQ---RPRGITL--SKDGKLLYVCASDSDTIQVIDL-ATGEV--IG--TLPS----G- 72 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCC---CCCceEE--CCCCCEEEEEECCCCeEEEEEC-CCCcE--EE--eccC----C-
Confidence 356799999999999888877533 5777665 9999999999887778777654 23322 11 1211 1
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCc
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH 184 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~ 184 (275)
..+..+.++|||++||+++...+.|.+||+.. .+.+..+.. +.
T Consensus 73 ------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---~~~~~~~~~----------------------------~~ 115 (300)
T TIGR03866 73 ------PDPELFALHPNGKILYIANEDDNLVTVIDIET---RKVLAEIPV----------------------------GV 115 (300)
T ss_pred ------CCccEEEECCCCCEEEEEcCCCCeEEEEECCC---CeEEeEeeC----------------------------CC
Confidence 22457889999999999999889999999844 344443332 22
Q ss_pred ccCCCCceEEECCCCCEEEEEe
Q 023927 185 RLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 185 ~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
. |+.++++|||++|+++.
T Consensus 116 ~----~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 116 E----PEGMAVSPDGKIVVNTS 133 (300)
T ss_pred C----cceEEECCCCCEEEEEe
Confidence 2 88999999999999886
No 16
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.6e-09 Score=101.75 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=113.9
Q ss_pred CCcCCCccccc-----cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec--cCCcEEEEEeC
Q 023927 11 AFTKGFNLQHV-----SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA--LASTMVRFSKT 83 (275)
Q Consensus 11 ~~~~g~~~~~~-----~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e--L~stV~~~~~~ 83 (275)
..+.|.++... +.....+.|.++|....+.++++.++. .|+++++ +|+++++||.+. .+++|.++...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc---CCceEEE--CCCCCEEEEEecccCCceEEEEeCC
Confidence 44455555443 334557999999999899999888865 8998877 999999999999 57999998752
Q ss_pred CCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCc
Q 023927 84 QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSP 163 (275)
Q Consensus 84 ~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~ 163 (275)
. + +.+.+++ ++..|..++++|||.++||+|...|.|++++.+. ..+.. ...+
T Consensus 149 t-~----~~~~~~~-----------vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~---~~v~~--~~~~------- 200 (381)
T COG3391 149 T-N----KVTATIP-----------VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG---NSVVR--GSVG------- 200 (381)
T ss_pred C-C----eEEEEEe-----------cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC---cceec--cccc-------
Confidence 1 1 1111222 1235689999999999999999999999999643 22321 1100
Q ss_pred eeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCe
Q 023927 164 VVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 239 (275)
Q Consensus 164 ~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l 239 (275)
.....|.. |+.++++|||+++||+| +. +....+.++ |..++.+
T Consensus 201 --------------~~~~~~~~----P~~i~v~~~g~~~yV~~--------~~-----~~~~~v~~i--d~~~~~v 243 (381)
T COG3391 201 --------------SLVGVGTG----PAGIAVDPDGNRVYVAN--------DG-----SGSNNVLKI--DTATGNV 243 (381)
T ss_pred --------------cccccCCC----CceEEECCCCCEEEEEe--------cc-----CCCceEEEE--eCCCceE
Confidence 01112454 99999999999999999 54 222466666 4466655
No 17
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.99 E-value=1.5e-08 Score=102.99 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=115.1
Q ss_pred CCeEEEEECCC-----CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-----CCCeeEEEEEEe
Q 023927 27 GRHLFVYSWPD-----GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-----DGSWNHEVAISV 96 (275)
Q Consensus 27 ~d~I~v~d~~~-----~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-----~G~~~~~~vi~i 96 (275)
+++|.|+|..+ .+++..|.+|. .|-++.+ +|||+++||.+.|+++|+++.... ++++..+.++.-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~v--SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNT--SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC---CccceEE--CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 57899999998 57888888876 8889887 999999999999999999998632 133333333322
Q ss_pred cCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC------C-CCeEEEEEEecceeecCCceeeecC
Q 023927 97 KSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP------K-NPVLTGQIWVGGLFRKGSPVVAVTD 169 (275)
Q Consensus 97 ~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~------~-~~~lv~~v~~gG~~~~~~~~~v~~~ 169 (275)
. ++++..|-...++.+|+ .|+|...+..|+.|+|... + ...++.++.+
T Consensus 370 e---------vevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV--------------- 424 (635)
T PRK02888 370 E---------PELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDV--------------- 424 (635)
T ss_pred e---------eccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccC---------------
Confidence 1 23456788888999986 9999999999999999651 0 0133444433
Q ss_pred CCCCCCCCC-ccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccc-ccccc--ccCCcEEEEEEeeCCCCCeeeccce
Q 023927 170 DGQPYQSDV-PEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQ-FYPEL--KEKGSHMLQIDVNSEKGGMAINPNF 245 (275)
Q Consensus 170 ~~~~~~~~~-~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q-~yp~~--~~~~~~~~~~d~d~~~G~l~~~~~f 245 (275)
.+||-- ....|+ ...||||||++.| +|-+. |+|-. .-++.+++ || ...+|+|-.++
T Consensus 425 ---~y~pgh~~~~~g~---------t~~~dgk~l~~~n----k~skdrfl~vgpl~pen~qli--dI--sgdkM~lv~d~ 484 (635)
T PRK02888 425 ---HYQPGHNHASMGE---------TKEADGKWLVSLN----KFSKDRFLPVGPLHPENDQLI--DI--SGDKMKLVHDG 484 (635)
T ss_pred ---CCccceeeecCCC---------cCCCCCCEEEEcc----ccccccccCCCCCCCCcceeE--Ec--cCCeeEEEecC
Confidence 344411 111122 2499999999999 33334 33322 12455554 55 34467777766
Q ss_pred eEecC
Q 023927 246 FVDFE 250 (275)
Q Consensus 246 ~vdf~ 250 (275)
.+ |.
T Consensus 485 p~-~~ 488 (635)
T PRK02888 485 PT-FA 488 (635)
T ss_pred CC-CC
Confidence 65 54
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=5.8e-08 Score=93.44 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=95.2
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
....+.++|-.++++++++..+. .|.++++ +|+|+.+||.++-+++|.++.-.. ..+.. .... ...
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~---~P~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~------~~v~~-~~~~-~~~- 203 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGN---TPTGVAV--DPDGNKVYVTNSDDNTVSVIDTSG------NSVVR-GSVG-SLV- 203 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCC---CcceEEE--CCCCCeEEEEecCCCeEEEEeCCC------cceec-cccc-ccc-
Confidence 57899999999999999877754 6777765 999999999999999999997321 11121 1100 000
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCC--CcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 183 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~--~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G 183 (275)
..+..|+.+.+++||+++||+|..+ +.|..++.. ...+.......+ .+
T Consensus 204 --~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~---~~~v~~~~~~~~-------------------------~~ 253 (381)
T COG3391 204 --GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA---TGNVTATDLPVG-------------------------SG 253 (381)
T ss_pred --ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC---CceEEEeccccc-------------------------cC
Confidence 1336889999999999999999998 566666652 234433211110 13
Q ss_pred cccCCCCceEEECCCCCEEEEEeC
Q 023927 184 HRLRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 184 ~~~~g~Pr~~~LSpDGk~LyVANs 207 (275)
. |+..+++|+|++.||+|+
T Consensus 254 -~----~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 254 -A----PRGVAVDPAGKAAYVANS 272 (381)
T ss_pred -C----CCceeECCCCCEEEEEec
Confidence 4 999999999999999994
No 19
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=1.1e-07 Score=84.84 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=93.2
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCC-CeeEEEEE-EecCccccccc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAI-SVKSLKVQNWI 105 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G-~~~~~~vi-~i~~~~~~g~~ 105 (275)
.+|+.++.+ ++...... .-..|.+|+| +|+++++||+.-....|++|..+.++ .+...+++ .+...
T Consensus 115 g~v~~~~~~-~~~~~~~~---~~~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVAD---GLGFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG------ 182 (246)
T ss_dssp EEEEEEETT-SEEEEEEE---EESSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS------
T ss_pred cceEEECCC-CeEEEEec---CcccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC------
Confidence 456666666 44332221 1236888877 99999999999999999999987554 47766665 22211
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
.+.|-.|+++.+|+ |||++++.+.|.+|+- . ++++..|.+. +++
T Consensus 183 ----~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p---~-G~~~~~i~~p---------------------------~~~ 226 (246)
T PF08450_consen 183 ----PGYPDGLAVDSDGN-LWVADWGGGRIVVFDP---D-GKLLREIELP---------------------------VPR 226 (246)
T ss_dssp ----SCEEEEEEEBTTS--EEEEEETTTEEEEEET---T-SCEEEEEE-S---------------------------SSS
T ss_pred ----CcCCCcceEcCCCC-EEEEEcCCCEEEEECC---C-ccEEEEEcCC---------------------------CCC
Confidence 13577899999997 9999999999999994 3 7788888762 234
Q ss_pred cCCCCceEEE-CCCCCEEEEEeC
Q 023927 186 LRGGPQMIQL-SLDGKRLYVTNS 207 (275)
Q Consensus 186 ~~g~Pr~~~L-SpDGk~LyVANs 207 (275)
|-++++ -+|.+.||||.+
T Consensus 227 ----~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 227 ----PTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----EEEEEEESTTSSEEEEEEB
T ss_pred ----EEEEEEECCCCCEEEEEeC
Confidence 889999 689999999974
No 20
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=9.5e-08 Score=85.20 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=92.0
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+.+|+.|+.+.++. +.+.++ +|..+++ +.....+||..+. .+.++. .++|++ +..+........
T Consensus 19 ~~~~~i~~~~~~~~~~-~~~~~~----~~~G~~~--~~~~g~l~v~~~~--~~~~~d-~~~g~~--~~~~~~~~~~~~-- 84 (246)
T PF08450_consen 19 IPGGRIYRVDPDTGEV-EVIDLP----GPNGMAF--DRPDGRLYVADSG--GIAVVD-PDTGKV--TVLADLPDGGVP-- 84 (246)
T ss_dssp TTTTEEEEEETTTTEE-EEEESS----SEEEEEE--ECTTSEEEEEETT--CEEEEE-TTTTEE--EEEEEEETTCSC--
T ss_pred cCCCEEEEEECCCCeE-EEEecC----CCceEEE--EccCCEEEEEEcC--ceEEEe-cCCCcE--EEEeeccCCCcc--
Confidence 3456777777766543 335553 3887766 6344778888764 444443 244544 333333211111
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCC--------CcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLH--------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS 176 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~--------~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~ 176 (275)
...|.|+++++||+ ||+++-+. +.|..++- .++.++ +..+
T Consensus 85 -----~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~--~~~~~~---~~~~--------------------- 132 (246)
T PF08450_consen 85 -----FNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDP--DGKVTV---VADG--------------------- 132 (246)
T ss_dssp -----TEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEET--TSEEEE---EEEE---------------------
T ss_pred -----cCCCceEEEcCCCC-EEEEecCCCccccccccceEEECC--CCeEEE---EecC---------------------
Confidence 15789999999999 99988754 33555543 222222 1110
Q ss_pred CCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCC
Q 023927 177 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE 252 (275)
Q Consensus 177 ~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~ 252 (275)
-. .|+.+++||||+.|||++ +.+..|+++|.|.+++.+. ++..+++|...
T Consensus 133 ------~~----~pNGi~~s~dg~~lyv~d---------------s~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (246)
T PF08450_consen 133 ------LG----FPNGIAFSPDGKTLYVAD---------------SFNGRIWRFDLDADGGELS-NRRVFIDFPGG 182 (246)
T ss_dssp ------ES----SEEEEEEETTSSEEEEEE---------------TTTTEEEEEEEETTTCCEE-EEEEEEE-SSS
T ss_pred ------cc----cccceEECCcchheeecc---------------cccceeEEEecccccccee-eeeeEEEcCCC
Confidence 11 399999999999999999 3466788898887666554 34444777554
No 21
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=2.6e-07 Score=99.63 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred CCcCCcCCCcccc-----ccCCccCCeEEEEECCCCCeeEEEEC-CCCC-----------ccceEEEEEeCCCCCEEEEe
Q 023927 8 APLAFTKGFNLQH-----VSDGLYGRHLFVYSWPDGELKQTLDL-GNTG-----------LIPLEIRFLHDPSKDIGFVG 70 (275)
Q Consensus 8 ~p~~~~~g~~~~~-----~~~g~~~d~I~v~d~~~~k~~~~i~L-g~~G-----------~gP~~v~f~f~P~g~~~YV~ 70 (275)
.|-.|+.|++.+. .+++...++|.+||.+.. .+..+.- +..| ..|.+|++ +++++.+||.
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVa 641 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVA 641 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEE
Confidence 3567888888853 255678899999998644 3333321 2211 24888876 9999999999
Q ss_pred eccCCcEEEEEeCCCCCeeEEEEEEecCc-----ccccccc--CCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 71 CALASTMVRFSKTQDGSWNHEVAISVKSL-----KVQNWIL--PEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 71 ~eL~stV~~~~~~~~G~~~~~~vi~i~~~-----~~~g~~~--~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
...+..|.++... ++ .+.++... .+.|-.. ...-+.|.+|.++|++..||||+.+.+.|.+|+..+
T Consensus 642 Dt~n~~Ir~id~~-~~-----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~- 714 (1057)
T PLN02919 642 DTENHALREIDFV-NE-----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD- 714 (1057)
T ss_pred eCCCceEEEEecC-CC-----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC-
Confidence 8877777777542 12 11111110 0111000 001257899999999999999999999999999744
Q ss_pred CCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccC
Q 023927 144 KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEK 223 (275)
Q Consensus 144 ~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~ 223 (275)
.... .+.-.|.... . +-. ........ .|+.++++|||++||||+ +.
T Consensus 715 --g~v~-~~~G~G~~~~------~-----~g~-~~~~~~~~----~P~GIavspdG~~LYVAD---------------s~ 760 (1057)
T PLN02919 715 --GVTR-VFSGDGYERN------L-----NGS-SGTSTSFA----QPSGISLSPDLKELYIAD---------------SE 760 (1057)
T ss_pred --CeEE-EEecCCcccc------C-----CCC-cccccccc----CccEEEEeCCCCEEEEEE---------------CC
Confidence 2221 1111111000 0 000 00001122 499999999999999999 34
Q ss_pred CcEEEEEEeeCCCCCe
Q 023927 224 GSHMLQIDVNSEKGGM 239 (275)
Q Consensus 224 ~~~~~~~d~d~~~G~l 239 (275)
+..|.++|. ++|+.
T Consensus 761 n~~Irv~D~--~tg~~ 774 (1057)
T PLN02919 761 SSSIRALDL--KTGGS 774 (1057)
T ss_pred CCeEEEEEC--CCCcE
Confidence 557777755 55553
No 22
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=1.6e-06 Score=93.57 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=102.6
Q ss_pred cCCccCCeEEEEECCCCCeeEEEE-CCCC--------------CccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCC
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLD-LGNT--------------GLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDG 86 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~-Lg~~--------------G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G 86 (275)
++..++++|.++|+.++++. ++. -+.. -..|..++| +|++..+||+...++.|+++... +|
T Consensus 640 VaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~-~g 715 (1057)
T PLN02919 640 VADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNIS-DG 715 (1057)
T ss_pred EEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECC-CC
Confidence 33446688888888776532 221 0100 125777766 99999999999999999888652 23
Q ss_pred CeeEEEEEEec--Ccccccc-ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecce--eecC
Q 023927 87 SWNHEVAISVK--SLKVQNW-ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL--FRKG 161 (275)
Q Consensus 87 ~~~~~~vi~i~--~~~~~g~-~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~--~~~~ 161 (275)
.. .++.-. .....+. .....-+.|..|.++|||++|||++.+.++|++|+++... ..+ ..||. ++.
T Consensus 716 ~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~~~----~~gg~~~~~~- 786 (1057)
T PLN02919 716 VT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG-SRL----LAGGDPTFSD- 786 (1057)
T ss_pred eE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-EEE----EEecccccCc-
Confidence 22 111100 0000010 0001225789999999999999999999999999985422 222 22221 000
Q ss_pred CceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCee
Q 023927 162 SPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 240 (275)
Q Consensus 162 ~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~ 240 (275)
.+........+........|+.+++++||+ ||||+ +.+..|.++|. ++|.+.
T Consensus 787 ---------~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVAD---------------s~N~rIrviD~--~tg~v~ 838 (1057)
T PLN02919 787 ---------NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVAD---------------SYNHKIKKLDP--ATKRVT 838 (1057)
T ss_pred ---------ccccccCCCCchhhhhccCCceeeEeCCCc-EEEEE---------------CCCCEEEEEEC--CCCeEE
Confidence 000000000000011122499999999997 99999 34667777854 667653
No 23
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=98.57 E-value=2.2e-07 Score=61.11 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 120 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 120 pDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
||+|+||||||++++|++||. .+.++++++.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEEC
Confidence 799999999999999999987 35788888887
No 24
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=2.5e-06 Score=80.56 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc-ccccccCCCCCceeEEEEcCCCCEEEEEeC----CC
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK-VQNWILPEMPGLITDFLISLDDRFLYFSNW----LH 132 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~-~~g~~~~~~~~~~adI~iSpDgrfLYVSNr----g~ 132 (275)
.+.||+...+-+.+--.++-...+.-.+|.. .+.+..++.. |-| -=++|+|||+||++-- +.
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyG-----------Hg~fs~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYG-----------HGVFSPDGRLLYTTENDYETGR 76 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEec-----------CEEEcCCCCEEEEeccccCCCc
Confidence 3447765555555555454444443334432 3344433322 223 3469999999999954 68
Q ss_pred CcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCc
Q 023927 133 GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAW 212 (275)
Q Consensus 133 ~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~w 212 (275)
+-|.|||.. ...+.+++.+++|+ +|..+.+.|||+.|.|||--..+=
T Consensus 77 G~IgVyd~~--~~~~ri~E~~s~GI-------------------------------GPHel~l~pDG~tLvVANGGI~Th 123 (305)
T PF07433_consen 77 GVIGVYDAA--RGYRRIGEFPSHGI-------------------------------GPHELLLMPDGETLVVANGGIETH 123 (305)
T ss_pred EEEEEEECc--CCcEEEeEecCCCc-------------------------------ChhhEEEcCCCCEEEEEcCCCccC
Confidence 999999985 35888898888775 599999999999999999777654
No 25
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.32 E-value=1.5e-05 Score=76.25 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=79.4
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--------cEEEEEeCCCCCeeEEEEEEecCc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--------TMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--------tV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
.+++|+|.+++|++-.++.+- .+- ++.+|+++.+|+..-.-+ .|+.++. .-++....-|.||++
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~---~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D--~~TL~~~~EI~iP~k 88 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGN---VALSPDGKTIYVAETFYSRGTRGERTDVVEIWD--TQTLSPTGEIEIPPK 88 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEE---EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE--TTTTEEEEEEEETTS
T ss_pred ceEEEEECCCCcEEEEeeccc---CCc---eeECCCCCEEEEEEEEEeccccccceeEEEEEe--cCcCcccceEecCCc
Confidence 589999999999988887653 222 456999999999843211 1111121 236777888888876
Q ss_pred -cccccccCCCCCceeEEEEcCCCCEEEEEeCC-CCcEEEEEecCCCCCeEEEEEEeccee
Q 023927 100 -KVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLF 158 (275)
Q Consensus 100 -~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg-~~sIavfdI~~~~~~~lv~~v~~gG~~ 158 (275)
.+.. ......+.+|.|||||||.|.- ..+|.|.|+.. .+.++.|++-|+.
T Consensus 89 ~R~~~------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~---~kvv~ei~~PGC~ 140 (342)
T PF06433_consen 89 PRAQV------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA---KKVVGEIDTPGCW 140 (342)
T ss_dssp -B--B------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT---TEEEEEEEGTSEE
T ss_pred chhee------cccccceEEccCCcEEEEEccCCCCeEEEEECCC---CceeeeecCCCEE
Confidence 4321 1466788999999999999997 48999999844 7889999987764
No 26
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.13 E-value=0.00025 Score=62.29 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=76.4
Q ss_pred eEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEee-ccCCcEEEEEeCCCCCeeEEEEEEecCccccccccC
Q 023927 29 HLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILP 107 (275)
Q Consensus 29 ~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~-eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~ 107 (275)
.|+.++... ..+..+.+.. .+|.+ .++++|+|+.+.|+. +...+|..|.. ..+++.++..
T Consensus 40 ~l~~~~~~~-~~~~~i~l~~--~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~------~~~~i~~~~~--------- 100 (194)
T PF08662_consen 40 ELFYLNEKN-IPVESIELKK--EGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDV------KGKKIFSFGT--------- 100 (194)
T ss_pred EEEEEecCC-CccceeeccC--CCceE-EEEECcCCCEEEEEEccCCcccEEEcC------cccEeEeecC---------
Confidence 344443332 3444566643 24543 467799999887774 45555555543 1233444432
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCC--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 108 EMPGLITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 108 ~~~~~~adI~iSpDgrfLYVSNrg--~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
.....|..||+|++|-++..+ .+.|..||+. +.+.+.+....
T Consensus 101 ---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~---~~~~i~~~~~~------------------------------ 144 (194)
T PF08662_consen 101 ---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR---KKKKISTFEHS------------------------------ 144 (194)
T ss_pred ---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC---CCEEeeccccC------------------------------
Confidence 233579999999999999876 4789999985 35554433210
Q ss_pred cCCCCceEEECCCCCEEEEEeC
Q 023927 186 LRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVANs 207 (275)
....++.|||||+|.+|.+
T Consensus 145 ---~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 145 ---DATDVEWSPDGRYLATATT 163 (194)
T ss_pred ---cEEEEEEcCCCCEEEEEEe
Confidence 2568999999999999983
No 27
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.00024 Score=67.20 Aligned_cols=48 Identities=33% Similarity=0.605 Sum_probs=34.6
Q ss_pred CceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCC
Q 023927 190 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEP 253 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~ 253 (275)
|+.+++|||||.||+|- +....+.+++.|..+|.. -+++-.++|..+|
T Consensus 165 ~NGla~SpDg~tly~aD---------------T~~~~i~r~~~d~~~g~~-~~~~~~~~~~~~~ 212 (307)
T COG3386 165 PNGLAFSPDGKTLYVAD---------------TPANRIHRYDLDPATGPI-GGRRGFVDFDEEP 212 (307)
T ss_pred cCceEECCCCCEEEEEe---------------CCCCeEEEEecCcccCcc-CCcceEEEccCCC
Confidence 99999999999999998 445677788777655543 4445556665433
No 28
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.00039 Score=68.35 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=49.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCc--EEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~st--V~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+|+++|+.+++..+-.... +. -. .+.|+|||++++++..-++. |+++.. +.|.. + .+... .
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~--g~-~~--~~~wSPDG~~La~~~~~~g~~~Iy~~dl-~tg~~--~---~lt~~----~ 305 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFP--GI-NG--APRFSPDGKKLALVLSKDGQPEIYVVDI-ATKAL--T---RITRH----R 305 (448)
T ss_pred CcEEEEEECCCCCeEEecCCC--CC-cC--CeeECCCCCEEEEEEeCCCCeEEEEEEC-CCCCe--E---ECccC----C
Confidence 457999999887654322221 11 11 24569999988765443343 444332 22322 1 11111 0
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCC--cEEEEEe
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHG--DIRQYNI 140 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~--sIavfdI 140 (275)
.......+||||++||.+....+ .|.++++
T Consensus 306 ------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 306 ------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred ------CCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 12246679999999876554333 4444454
No 29
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.00047 Score=67.28 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=51.3
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--cEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
....|+++++++++..+-..+.. .-.. +.|+|||++++++...++ .|+++.. +.|.. + .+....
T Consensus 221 g~~~i~i~dl~~G~~~~l~~~~~---~~~~--~~~SPDG~~La~~~~~~g~~~I~~~d~-~tg~~--~---~lt~~~--- 286 (429)
T PRK03629 221 GRSALVIQTLANGAVRQVASFPR---HNGA--PAFSPDGSKLAFALSKTGSLNLYVMDL-ASGQI--R---QVTDGR--- 286 (429)
T ss_pred CCcEEEEEECCCCCeEEccCCCC---CcCC--eEECCCCCEEEEEEcCCCCcEEEEEEC-CCCCE--E---EccCCC---
Confidence 34679999998876544333321 1112 345999998887644333 3555443 22322 1 111110
Q ss_pred cccCCCCCceeEEEEcCCCCEE-EEEeCCCCcEEEEEe
Q 023927 104 WILPEMPGLITDFLISLDDRFL-YFSNWLHGDIRQYNI 140 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfL-YVSNrg~~sIavfdI 140 (275)
........||||++| |+|+++. ...+|.+
T Consensus 287 -------~~~~~~~wSPDG~~I~f~s~~~g-~~~Iy~~ 316 (429)
T PRK03629 287 -------SNNTEPTWFPDSQNLAYTSDQAG-RPQVYKV 316 (429)
T ss_pred -------CCcCceEECCCCCEEEEEeCCCC-CceEEEE
Confidence 233577899999977 6777743 3344444
No 30
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.91 E-value=8.6e-05 Score=71.15 Aligned_cols=67 Identities=25% Similarity=0.305 Sum_probs=45.6
Q ss_pred eeEEEEcCCCCEEEEEeC-------C--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccC
Q 023927 113 ITDFLISLDDRFLYFSNW-------L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 183 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNr-------g--~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G 183 (275)
.+.+.+|||||++|+++- | .+-|.+||. .+++..+.|.+-++ +++. -+
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~---~TL~~~~EI~iP~k---------------~R~~-----~~ 94 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT---QTLSPTGEIEIPPK---------------PRAQ-----VV 94 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET---TTTEEEEEEEETTS----------------B-------BS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEec---CcCcccceEecCCc---------------chhe-----ec
Confidence 356889999999999752 3 477888886 45888888766110 0110 11
Q ss_pred cccCCCCceEEECCCCCEEEEEe
Q 023927 184 HRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 184 ~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
- .+++++||.|||||||.|
T Consensus 95 ~----~~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 95 P----YKNMFALSADGKFLYVQN 113 (342)
T ss_dssp ------GGGEEE-TTSSEEEEEE
T ss_pred c----cccceEEccCCcEEEEEc
Confidence 2 499999999999999999
No 31
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=0.00037 Score=67.05 Aligned_cols=142 Identities=15% Similarity=0.253 Sum_probs=91.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEe---eccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVG---CALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~---~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
..+|+|||++..|++.+|+.-++ -|.++ ++++|+..-.|+. +--.+.|.+|.- .+.+++-.|..- +
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~--n~~gl-~AlS~n~~n~ylAyp~s~t~GdV~l~d~-----~nl~~v~~I~aH--~- 173 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPP--NPKGL-CALSPNNANCYLAYPGSTTSGDVVLFDT-----INLQPVNTINAH--K- 173 (391)
T ss_pred cccEEEEecccceeehhhhccCC--Cccce-EeeccCCCCceEEecCCCCCceEEEEEc-----ccceeeeEEEec--C-
Confidence 45599999999999999887522 45543 4567776544544 334566666652 233444444321 2
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 183 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G 183 (275)
...|++++|+||..|=-+.-..--|+||.|.+ +.++-+ |.|+
T Consensus 174 -------~~lAalafs~~G~llATASeKGTVIRVf~v~~---G~kl~e------FRRG---------------------- 215 (391)
T KOG2110|consen 174 -------GPLAALAFSPDGTLLATASEKGTVIRVFSVPE---GQKLYE------FRRG---------------------- 215 (391)
T ss_pred -------CceeEEEECCCCCEEEEeccCceEEEEEEcCC---ccEeee------eeCC----------------------
Confidence 35689999999998866666566789999955 333222 2232
Q ss_pred cccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEe
Q 023927 184 HRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV 232 (275)
Q Consensus 184 ~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~ 232 (275)
-. --.=-.+++|||+++|-++.+ ++..++|+++-
T Consensus 216 ~~-~~~IySL~Fs~ds~~L~~sS~--------------TeTVHiFKL~~ 249 (391)
T KOG2110|consen 216 TY-PVSIYSLSFSPDSQFLAASSN--------------TETVHIFKLEK 249 (391)
T ss_pred ce-eeEEEEEEECCCCCeEEEecC--------------CCeEEEEEecc
Confidence 11 000124799999999998872 67889999854
No 32
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.90 E-value=0.0013 Score=64.12 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC-CCeeEEEEEEecCccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~-G~~~~~~vi~i~~~~~~g~~ 105 (275)
..+|++||+.+++..+-.... + .-. ...|+|||++++++...++..-++.++.+ +.. + .+... .
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~--g-~~~--~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---~--~lt~~--~--- 283 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFK--G-SNS--APAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---R--RLTQS--S--- 283 (427)
T ss_pred CcEEEEEECCCCCEEEeecCC--C-Ccc--ceEECCCCCEEEEEEccCCCceEEEEECCCCCc---E--ECCCC--C---
Confidence 467999999888764432232 1 112 23459999988765444444333333222 221 1 11111 0
Q ss_pred cCCCCCceeEEEEcCCCCEEE-EEeCCCCcEEEEEe
Q 023927 106 LPEMPGLITDFLISLDDRFLY-FSNWLHGDIRQYNI 140 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLY-VSNrg~~sIavfdI 140 (275)
.......+||||++|+ +|+|+ +...+|.+
T Consensus 284 -----~~~~~~~wSpDG~~l~f~s~~~-g~~~Iy~~ 313 (427)
T PRK02889 284 -----GIDTEPFFSPDGRSIYFTSDRG-GAPQIYRM 313 (427)
T ss_pred -----CCCcCeEEcCCCCEEEEEecCC-CCcEEEEE
Confidence 1123456999999765 66664 33445554
No 33
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.00019 Score=67.65 Aligned_cols=124 Identities=20% Similarity=0.265 Sum_probs=77.8
Q ss_pred CCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEec-CccccccccCCCCCceeE
Q 023927 37 DGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK-SLKVQNWILPEMPGLITD 115 (275)
Q Consensus 37 ~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~-~~~~~g~~~~~~~~~~ad 115 (275)
.+|.+..+.|+..+. . .+|||..+++-+..--.+|-...+. .++.- ..+++... ...|-| .
T Consensus 57 aGk~v~~~~lpaR~H---g--i~~~p~~~ravafARrPGtf~~vfD-~~~~~-~pv~~~s~~~RHfyG-----------H 118 (366)
T COG3490 57 AGKIVFATALPARGH---G--IAFHPALPRAVAFARRPGTFAMVFD-PNGAQ-EPVTLVSQEGRHFYG-----------H 118 (366)
T ss_pred CCceeeeeecccccC---C--eecCCCCcceEEEEecCCceEEEEC-CCCCc-CcEEEecccCceeec-----------c
Confidence 367777777765433 2 3346766666555555555544442 22211 12333222 222323 2
Q ss_pred EEEcCCCCEEEEEeC----CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCc
Q 023927 116 FLISLDDRFLYFSNW----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 191 (275)
Q Consensus 116 I~iSpDgrfLYVSNr----g~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr 191 (275)
=++||||++||++-- +.+-|-+||.. .+...++++++-|. ||.
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~Gi-------------------------------GpH 165 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGI-------------------------------GPH 165 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCc-------------------------------Ccc
Confidence 358999999999976 35789999984 34666777766443 599
Q ss_pred eEEECCCCCEEEEEeCCCCC
Q 023927 192 MIQLSLDGKRLYVTNSLFSA 211 (275)
Q Consensus 192 ~~~LSpDGk~LyVANsl~~~ 211 (275)
.|.|.+||+.|.|||--..+
T Consensus 166 ev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 166 EVTLMADGRTLVVANGGIET 185 (366)
T ss_pred eeEEecCCcEEEEeCCceec
Confidence 99999999999999964443
No 34
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0017 Score=61.34 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=85.5
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC--CCCCeeEEEEEEecCc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSL 99 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~--~~G~~~~~~vi~i~~~ 99 (275)
..+-...+|..||+...+-.--+.+.. -|. .+|+|+|-.+=++++-. .|-.+... +.|= -++..+...
T Consensus 116 lS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi---~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgP---F~tf~i~~~ 185 (311)
T KOG1446|consen 116 LSSSLDKTVRLWDLRVKKCQGLLNLSG---RPI---AAFDPEGLIFALANGSE-LIKLYDLRSFDKGP---FTTFSITDN 185 (311)
T ss_pred EecccCCeEEeeEecCCCCceEEecCC---Ccc---eeECCCCcEEEEecCCC-eEEEEEecccCCCC---ceeEccCCC
Confidence 344577899999999776555566643 222 46799998777776653 45444431 2232 244555433
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
....| ++|.+|||||+|-+|.. ++.|.++|- ..+.+...+..- +
T Consensus 186 ~~~ew---------~~l~FS~dGK~iLlsT~-~s~~~~lDA---f~G~~~~tfs~~--------------------~--- 229 (311)
T KOG1446|consen 186 DEAEW---------TDLEFSPDGKSILLSTN-ASFIYLLDA---FDGTVKSTFSGY--------------------P--- 229 (311)
T ss_pred Cccce---------eeeEEcCCCCEEEEEeC-CCcEEEEEc---cCCcEeeeEeec--------------------c---
Confidence 22334 89999999999999987 455666662 345565544420 0
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEe
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
-.|+. |=+.+++|||++++..-
T Consensus 230 -~~~~~----~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 230 -NAGNL----PLSATFTPDSKFVLSGS 251 (311)
T ss_pred -CCCCc----ceeEEECCCCcEEEEec
Confidence 02333 77889999999999985
No 35
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.84 E-value=0.0019 Score=61.37 Aligned_cols=124 Identities=11% Similarity=0.068 Sum_probs=67.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCc--EEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAST--MVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~st--V~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+|++||+.+++........ + .... +.|+|+|+.+|++...++. |+.+.. .++.. +.+... .+
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~--~-~~~~--~~~spDg~~l~~~~~~~~~~~i~~~d~-~~~~~---~~l~~~----~~- 278 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFP--G-MNGA--PAFSPDGSKLAVSLSKDGNPDIYVMDL-DGKQL---TRLTNG----PG- 278 (417)
T ss_pred CcEEEEEECCCCCEEEeecCC--C-Cccc--eEECCCCCEEEEEECCCCCccEEEEEC-CCCCE---EECCCC----CC-
Confidence 368999999887654433222 1 1222 3459999988876554443 443332 22222 111111 11
Q ss_pred ccCCCCCceeEEEEcCCCCEEE-EEeCC-CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcccc
Q 023927 105 ILPEMPGLITDFLISLDDRFLY-FSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ 182 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLY-VSNrg-~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~ 182 (275)
......+||||++|+ +|+|+ ...|.++++.. .+. ..+...
T Consensus 279 -------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~---~~~-~~l~~~--------------------------- 320 (417)
T TIGR02800 279 -------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG---GEV-RRLTFR--------------------------- 320 (417)
T ss_pred -------CCCCEEECCCCCEEEEEECCCCCceEEEEECCC---CCE-EEeecC---------------------------
Confidence 112446899999875 56664 23555555422 221 112111
Q ss_pred CcccCCCCceEEECCCCCEEEEEe
Q 023927 183 GHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 183 G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+.. ....++||||++|++++
T Consensus 321 ~~~----~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 321 GGY----NASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCC----ccCeEECCCCCEEEEEE
Confidence 222 45678999999999988
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.81 E-value=0.0021 Score=54.10 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=82.4
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
+.....|.+||+...+.++.+... ......+. ++|+++++++++. ++.|.++.... +. ... .+. +
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~--~~~~~~~l~~~~~-~~~i~i~d~~~-~~--~~~--~~~-----~ 217 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGH--TGEVNSVA--FSPDGEKLLSSSS-DGTIKLWDLST-GK--CLG--TLR-----G 217 (289)
T ss_pred EcCCCcEEEEEccccccceeEecC--ccccceEE--ECCCcCEEEEecC-CCcEEEEECCC-Cc--eec--chh-----h
Confidence 334778999999988877766632 22345554 5999999888877 67777776421 11 111 110 0
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 183 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G 183 (275)
.......+.+++|+++++++. ..+.|.+|++.. .+....+.. ..
T Consensus 218 -----~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~---~~~~~~~~~---------------------------~~ 261 (289)
T cd00200 218 -----HENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRT---GECVQTLSG---------------------------HT 261 (289)
T ss_pred -----cCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCC---ceeEEEccc---------------------------cC
Confidence 013567899999977665554 678999999844 233322221 01
Q ss_pred cccCCCCceEEECCCCCEEEEEe
Q 023927 184 HRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 184 ~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
. ....++++|+|++|+++.
T Consensus 262 ~----~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 262 N----SVTSLAWSPDGKRLASGS 280 (289)
T ss_pred C----cEEEEEECCCCCEEEEec
Confidence 1 277899999999999887
No 37
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.80 E-value=0.0018 Score=63.02 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEEEEEecCccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
..+|++||++.++..+ +......... +.|+|||++++.+..-++..-++.++ +.|.. +.++. .+
T Consensus 271 ~~~Iy~~d~~~g~~~~---lt~~~~~~~~--~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~-----~g-- 335 (433)
T PRK04922 271 NPEIYVMDLGSRQLTR---LTNHFGIDTE--PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTF-----QG-- 335 (433)
T ss_pred CceEEEEECCCCCeEE---CccCCCCccc--eEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeec-----CC--
Confidence 3579999998877543 2211111222 34599999877765544443233232 22332 22221 11
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCC--cEEEEEecC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHG--DIRQYNIED 142 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~--sIavfdI~~ 142 (275)
.....+.+||||++||++++..+ .|.++++..
T Consensus 336 -----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 336 -----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred -----CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 12245789999999998876433 588888733
No 38
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.0026 Score=61.91 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=49.7
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC-CCeeEEEEEEecCcccccccc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~-G~~~~~~vi~i~~~~~~g~~~ 106 (275)
.+|+++|++.++.. .|......... ..|+|||++++..+.-++..-++..+.+ +.. +.++.. +
T Consensus 264 ~~Iy~~d~~~~~~~---~lt~~~~~~~~--~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~-----g--- 327 (427)
T PRK02889 264 SQIYTVNADGSGLR---RLTQSSGIDTE--PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVTFT-----G--- 327 (427)
T ss_pred ceEEEEECCCCCcE---ECCCCCCCCcC--eEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEecC-----C---
Confidence 56777777665532 23221111222 3469999987665544344333333322 221 222211 1
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCC--CcEEEEEecC
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWLH--GDIRQYNIED 142 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg~--~sIavfdI~~ 142 (275)
.......+||||++|+.+.+.. ..|.+++++.
T Consensus 328 ----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 328 ----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred ----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 1123457999999987665533 3688888744
No 39
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.0014 Score=63.70 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=53.4
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-CCCeeEEEEEEecCccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-~G~~~~~~vi~i~~~~~~g~~ 105 (275)
..+|++||+.+++..+-..+..... ...|+|||++++++..-++.+-.+.++. .+.. .. +... .
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~-----~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~--lt~~--~--- 291 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNG-----APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP---SQ--LTSG--A--- 291 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccC-----ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe---Ee--eccC--C---
Confidence 4579999998875433222321111 2345999998887765445443333332 2322 11 1111 0
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.......+||||++|+.+....+.+.+|+++.
T Consensus 292 -----~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 292 -----GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -----CCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 12356789999998775544455677777744
No 40
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.77 E-value=0.0025 Score=62.07 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=66.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--cEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
...|++|+++.++..+-.... + .-. ...|+|+|++++++..-++ .|+++.. +.|.. .+ +... .
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~--g-~~~--~~~~SpDG~~l~~~~s~~g~~~Iy~~d~-~~g~~--~~---lt~~--~-- 291 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR--G-ING--APSFSPDGRRLALTLSRDGNPEIYVMDL-GSRQL--TR---LTNH--F-- 291 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC--C-Ccc--CceECCCCCEEEEEEeCCCCceEEEEEC-CCCCe--EE---CccC--C--
Confidence 467999999887654322221 1 111 2345999998866543222 4555543 22322 11 1111 0
Q ss_pred ccCCCCCceeEEEEcCCCCEEE-EEeCC-CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcccc
Q 023927 105 ILPEMPGLITDFLISLDDRFLY-FSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ 182 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLY-VSNrg-~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~ 182 (275)
.......+||||++|+ +|+|. ...|.++++.. ++.+. +...
T Consensus 292 ------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~~~~---lt~~--------------------------- 334 (433)
T PRK04922 292 ------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GSAER---LTFQ--------------------------- 334 (433)
T ss_pred ------CCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCeEE---eecC---------------------------
Confidence 1224568999999776 45553 23455555422 22222 2111
Q ss_pred CcccCCCCceEEECCCCCEEEEEe
Q 023927 183 GHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 183 G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
|.. ....++||||++|++++
T Consensus 335 g~~----~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 335 GNY----NARASVSPDGKKIAMVH 354 (433)
T ss_pred CCC----ccCEEECCCCCEEEEEE
Confidence 222 44578999999999886
No 41
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0014 Score=63.11 Aligned_cols=94 Identities=11% Similarity=0.145 Sum_probs=53.2
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEEEEEecCcccccccc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
.+|++||+++++..+ |......... +.|+|+|+++|...+-++..-++.++ ..|... .++.. +
T Consensus 267 ~~Iy~~d~~~~~~~~---lt~~~~~~~~--~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt~~-----~--- 330 (430)
T PRK00178 267 PEIYVMDLASRQLSR---VTNHPAIDTE--PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVTFV-----G--- 330 (430)
T ss_pred ceEEEEECCCCCeEE---cccCCCCcCC--eEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecC-----C---
Confidence 579999998876543 2211112222 34599999877665544333333332 234331 12211 1
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCC--cEEEEEec
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWLHG--DIRQYNIE 141 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg~~--sIavfdI~ 141 (275)
...+...+||||++||.+++..+ .|.++|+.
T Consensus 331 ----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 331 ----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred ----CCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 12235679999999999887544 57777763
No 42
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0014 Score=64.48 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=53.6
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEEEEEecCcccccccc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
.+|+++|+++++..+ |.......... .|+|||++++...+.++...++.++ +.|+.. .++. .+
T Consensus 286 ~~Iy~~dl~tg~~~~---lt~~~~~~~~p--~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~---~Lt~-----~g--- 349 (448)
T PRK04792 286 PEIYVVDIATKALTR---ITRHRAIDTEP--SWHPDGKSLIFTSERGGKPQIYRVNLASGKVS---RLTF-----EG--- 349 (448)
T ss_pred eEEEEEECCCCCeEE---CccCCCCccce--EECCCCCEEEEEECCCCCceEEEEECCCCCEE---EEec-----CC---
Confidence 478889998776543 22211223333 4599999988877665554444433 334431 1221 11
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCC--cEEEEEe
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWLHG--DIRQYNI 140 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg~~--sIavfdI 140 (275)
.......+||||++||.+++..+ .|.++++
T Consensus 350 ----~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 350 ----EQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred ----CCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 11123478999999999887655 4455554
No 43
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.002 Score=62.88 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=51.2
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--cEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
.+|++||+++++..+-. ........ +.|+|+|++++.+..-+. .|+++.. +.|.. +.++.. +
T Consensus 267 ~~I~~~d~~tg~~~~lt---~~~~~~~~--~~wSPDG~~I~f~s~~~g~~~Iy~~d~-~~g~~---~~lt~~-----~-- 330 (429)
T PRK03629 267 LNLYVMDLASGQIRQVT---DGRSNNTE--PTWFPDSQNLAYTSDQAGRPQVYKVNI-NGGAP---QRITWE-----G-- 330 (429)
T ss_pred cEEEEEECCCCCEEEcc---CCCCCcCc--eEECCCCCEEEEEeCCCCCceEEEEEC-CCCCe---EEeecC-----C--
Confidence 47999999888765422 11112223 456999997754443332 3333322 22221 122111 1
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCC--CCcEEEEEecC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWL--HGDIRQYNIED 142 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg--~~sIavfdI~~ 142 (275)
.......+||||++|+.+.+. ...|.+++++.
T Consensus 331 -----~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 331 -----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -----CCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 123467799999999776553 34577777733
No 44
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.0059 Score=59.84 Aligned_cols=98 Identities=18% Similarity=0.064 Sum_probs=48.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeecc--CCcEEEEEeC-CCCCeeEEEEEEecCccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCAL--ASTMVRFSKT-QDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL--~stV~~~~~~-~~G~~~~~~vi~i~~~~~~g 103 (275)
..+|++++++.++..+-..+..... ...++|||+++..+..- ...+++..++ +.|.......++ ....
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~-----~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt--~~~~-- 280 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQL-----MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL--NEAF-- 280 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCcc-----ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee--cCCC--
Confidence 4679999998876544344432112 23459999766554322 1244443222 222111111111 1100
Q ss_pred cccCCCCCceeEEEEcCCCCEEE-EEeCC-CCcEEEEEe
Q 023927 104 WILPEMPGLITDFLISLDDRFLY-FSNWL-HGDIRQYNI 140 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLY-VSNrg-~~sIavfdI 140 (275)
.......+||||++|+ +|+|. .-.|.++++
T Consensus 281 -------~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 281 -------GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred -------CCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 1224568999999655 55553 234544444
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0014 Score=64.56 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=91.2
Q ss_pred cCCccCCeEEEEECCC-CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 22 SDGLYGRHLFVYSWPD-GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~-~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+.+-...+|.+||+.. ++.+.++. ++. .....+.|+|++ ...+++-.+.+|-++... .|+. ..++..-.
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~-gH~---~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~-~~~~--~~~l~~hs-- 288 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLK-GHS---TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR-TGEC--VRKLKGHS-- 288 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEec-CCC---CceEEEEecCCC-CEEEEecCCCcEEEEecc-CCeE--EEeeeccC--
Confidence 4466788999999944 46666655 442 222456679999 888898999999888752 1211 22221111
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcc
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE 180 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~ 180 (275)
...+.+.+++||++|.++.. .+.|.+||+...... ++..+.
T Consensus 289 ----------~~is~~~f~~d~~~l~s~s~-d~~i~vwd~~~~~~~-~~~~~~--------------------------- 329 (456)
T KOG0266|consen 289 ----------DGISGLAFSPDGNLLVSASY-DGTIRVWDLETGSKL-CLKLLS--------------------------- 329 (456)
T ss_pred ----------CceEEEEECCCCCEEEEcCC-CccEEEEECCCCcee-eeeccc---------------------------
Confidence 34578999999999999966 999999998442211 111111
Q ss_pred ccCcccCCCC---ceEEECCCCCEEEEEe--CCCCCcccc
Q 023927 181 VQGHRLRGGP---QMIQLSLDGKRLYVTN--SLFSAWDCQ 215 (275)
Q Consensus 181 ~~G~~~~g~P---r~~~LSpDGk~LyVAN--sl~~~wd~Q 215 (275)
..+. | +.++++|+|++|+++. +.++.||-+
T Consensus 330 -~~~~----~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 330 -GAEN----SAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred -CCCC----CCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 1122 5 7889999999999986 234445544
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.64 E-value=0.00078 Score=66.66 Aligned_cols=146 Identities=16% Similarity=0.301 Sum_probs=101.1
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC-------CCeeEEEEEEec
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD-------GSWNHEVAISVK 97 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~-------G~~~~~~vi~i~ 97 (275)
-|...|.+||+.+++.++++.++. .|..+.| ||+....|+++.+++.|..+..... -.+.....|+..
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~---~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDK---VPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV 351 (503)
T ss_pred ecceeeeeeccccceEEEEEecCC---Cceeeec--CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence 488899999999999999998865 8888887 9999999999999999999874211 112222233322
Q ss_pred Cc-----------ccccc--ccC---------CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEec
Q 023927 98 SL-----------KVQNW--ILP---------EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG 155 (275)
Q Consensus 98 ~~-----------~~~g~--~~~---------~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~g 155 (275)
+. .+.-| ..+ +|-.. =.|.++|.|+++ ++--..|.|++|.+..+.+...-
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsm-P~~~~~P~~~~~-~aQs~dN~i~ifs~~~~~r~nkk------ 423 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTM-PCLTLHPNGKWF-AAQSMDNYIAIFSTVPPFRLNKK------ 423 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccC-cceecCCCCCee-hhhccCceEEEEecccccccCHh------
Confidence 22 11111 111 11112 257899999977 45556899999998664432220
Q ss_pred ceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 156 GLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 156 G~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
..-+|..++|-+=.+.+||||++|.-.+
T Consensus 424 -----------------------K~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 424 -----------------------KRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred -----------------------hhhcceeccCceeeEEEcCCCCeEEeec
Confidence 1124778888899999999999999988
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.63 E-value=0.0033 Score=52.81 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=64.3
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
+.....|.+||+.+.+.+..+.. .......+. ++|+++++++.+ .++.|.++... .+ ...+.+...
T Consensus 111 ~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~--~~~~~~~l~~~~-~~~~i~i~d~~-~~--~~~~~~~~~------ 176 (289)
T cd00200 111 SSRDKTIKVWDVETGKCLTTLRG--HTDWVNSVA--FSPDGTFVASSS-QDGTIKLWDLR-TG--KCVATLTGH------ 176 (289)
T ss_pred ecCCCeEEEEECCCcEEEEEecc--CCCcEEEEE--EcCcCCEEEEEc-CCCcEEEEEcc-cc--ccceeEecC------
Confidence 33478899999998777666652 223455555 499988777665 35677766542 11 111222110
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
......+.++|+++.|+++.. .+.|.+|++..
T Consensus 177 ------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 177 ------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred ------ccccceEEECCCcCEEEEecC-CCcEEEEECCC
Confidence 124578999999999988887 88999999854
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.62 E-value=0.004 Score=58.27 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=102.2
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec----cCCcEEEEEeCCC-CCeeEE-EEE
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA----LASTMVRFSKTQD-GSWNHE-VAI 94 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e----L~stV~~~~~~~~-G~~~~~-~vi 94 (275)
+.-|...+++.+||+.++|.+.+++.+. ..+.+-| +++|+++-++.+ -++.|.+|....+ -....+ ...
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~k~~~---~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATWKTNS---PVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEeecCC---eeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 4556677889999999999999988864 5565555 999999888877 3566666654211 122222 233
Q ss_pred EecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCC
Q 023927 95 SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPY 174 (275)
Q Consensus 95 ~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~ 174 (275)
.|+... ..++-...+|-+++| +++--.++|++||+... .+++.....
T Consensus 142 kI~t~~----------skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g--~~~v~s~~~-------------------- 188 (327)
T KOG0643|consen 142 KIPTPD----------SKITSALWGPLGETI-IAGHEDGSISIYDARTG--KELVDSDEE-------------------- 188 (327)
T ss_pred EecCCc----------cceeeeeecccCCEE-EEecCCCcEEEEEcccC--ceeeechhh--------------------
Confidence 444221 356778899999999 67777899999998441 344332221
Q ss_pred CCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEe
Q 023927 175 QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVD 248 (275)
Q Consensus 175 ~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vd 248 (275)
-++. =++|++|||..+.+-+. +|. +-..+|+. .|++.+.|..|
T Consensus 189 -------h~~~----Ind~q~s~d~T~FiT~s---------------~Dt-takl~D~~----tl~v~Kty~te 231 (327)
T KOG0643|consen 189 -------HSSK----INDLQFSRDRTYFITGS---------------KDT-TAKLVDVR----TLEVLKTYTTE 231 (327)
T ss_pred -------hccc----cccccccCCcceEEecc---------------cCc-cceeeecc----ceeeEEEeeec
Confidence 0222 66899999987655554 222 33346664 56666666654
No 49
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.005 Score=59.41 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=48.7
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--cEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+|++|++++++..+-... .+. .. .+.|+|||++++++..-++ .|+++.. +.+... + + ... .
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~--~g~-~~--~~~~SpDG~~la~~~~~~g~~~Iy~~d~-~~~~~~--~-l--t~~--~-- 286 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNF--EGL-NG--APAWSPDGSKLAFVLSKDGNPEIYVMDL-ASRQLS--R-V--TNH--P-- 286 (430)
T ss_pred CCEEEEEECCCCCEEEccCC--CCC-cC--CeEECCCCCEEEEEEccCCCceEEEEEC-CCCCeE--E-c--ccC--C--
Confidence 45789999988765432222 111 11 2445999998876543333 4444432 223321 1 1 111 0
Q ss_pred ccCCCCCceeEEEEcCCCCEEE-EEeCC-CCcEEEEEe
Q 023927 105 ILPEMPGLITDFLISLDDRFLY-FSNWL-HGDIRQYNI 140 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLY-VSNrg-~~sIavfdI 140 (275)
........||||++|| +|++. ...|..+++
T Consensus 287 ------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 287 ------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred ------CCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 1223456899999875 55553 345655565
No 50
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.51 E-value=0.0045 Score=57.48 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=83.1
Q ss_pred ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecC
Q 023927 19 QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS 98 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~ 98 (275)
.+|..|-....|++||+....-.. .-++++...-+.+. .+|+|+++-.++-- ++..++..-. .....+.+.+
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~--v~~dgsml~a~nnk-G~cyvW~l~~--~~~~s~l~P~-- 208 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLT--VMPDGSMLAAANNK-GNCYVWRLLN--HQTASELEPV-- 208 (311)
T ss_pred ceEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEE--EcCCCcEEEEecCC-ccEEEEEccC--CCccccceEh--
Confidence 344444566779999998763221 11333333334444 49999977666443 4455544311 1111111111
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
.++... ..++.-+++|||+|+| ++|-.+-++.+|.+++ . .++--++. |
T Consensus 209 ~k~~ah-----~~~il~C~lSPd~k~l-at~ssdktv~iwn~~~-~-~kle~~l~-g----------------------- 256 (311)
T KOG0315|consen 209 HKFQAH-----NGHILRCLLSPDVKYL-ATCSSDKTVKIWNTDD-F-FKLELVLT-G----------------------- 256 (311)
T ss_pred hheecc-----cceEEEEEECCCCcEE-EeecCCceEEEEecCC-c-eeeEEEee-c-----------------------
Confidence 122211 2578899999999998 6666788999999955 3 33321121 1
Q ss_pred ccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
|++ +-.+-++|-||+||+-|.
T Consensus 257 ----h~r---WvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 257 ----HQR---WVWDCAFSADGEYLVTAS 277 (311)
T ss_pred ----CCc---eEEeeeeccCccEEEecC
Confidence 222 477889999999999987
No 51
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.51 E-value=0.004 Score=59.57 Aligned_cols=69 Identities=16% Similarity=0.346 Sum_probs=45.7
Q ss_pred cceEEEEEeCCCCCEEEEee------------ccCCcEEEEEe-CCCCCeeEEEEEEecCccccccccCCCCCceeEEEE
Q 023927 52 IPLEIRFLHDPSKDIGFVGC------------ALASTMVRFSK-TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLI 118 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV~~------------eL~stV~~~~~-~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~i 118 (275)
-|+.|+| +++|+ +||+. +.++.|.++.. +.+|+.....++. ++. ..|..|++
T Consensus 15 ~P~~ia~--d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa------~~l------~~p~Gi~~ 79 (367)
T TIGR02604 15 NPIAVCF--DERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA------EEL------SMVTGLAV 79 (367)
T ss_pred CCceeeE--CCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee------cCC------CCccceeE
Confidence 6887766 99998 78874 23457888864 3456554333332 112 35688999
Q ss_pred cCCCCEEEEEeCCCCcEEEEE
Q 023927 119 SLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 119 SpDgrfLYVSNrg~~sIavfd 139 (275)
.++| |||+++. .|..|.
T Consensus 80 ~~~G--lyV~~~~--~i~~~~ 96 (367)
T TIGR02604 80 AVGG--VYVATPP--DILFLR 96 (367)
T ss_pred ecCC--EEEeCCC--eEEEEe
Confidence 9999 9999864 576663
No 52
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.49 E-value=0.0075 Score=57.25 Aligned_cols=96 Identities=13% Similarity=-0.041 Sum_probs=50.6
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccC--CcEEEEEeCCCCCeeEEEEEEecCcccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALA--STMVRFSKTQDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~--stV~~~~~~~~G~~~~~~vi~i~~~~~~ 102 (275)
....+|+++|.+..+..+-... +..-. ...++|+|++++.+..-+ .+|+++.. ++|... .+... .
T Consensus 167 ~~~~~l~~~d~~g~~~~~l~~~---~~~~~--~p~~Spdg~~la~~~~~~~~~~i~v~d~-~~g~~~---~~~~~----~ 233 (417)
T TIGR02800 167 SRRYELQVADYDGANPQTITRS---REPIL--SPAWSPDGQKLAYVSFESGKPEIYVQDL-ATGQRE---KVASF----P 233 (417)
T ss_pred CCcceEEEEcCCCCCCEEeecC---CCcee--cccCCCCCCEEEEEEcCCCCcEEEEEEC-CCCCEE---EeecC----C
Confidence 3456788888865443322222 11122 234699999877665433 34444432 333221 11111 1
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCC--CcEEEEEec
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLH--GDIRQYNIE 141 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~--~sIavfdI~ 141 (275)
.....+.+||||+.||++.... ..|..+++.
T Consensus 234 --------~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 234 --------GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred --------CCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 1224578999999888765433 456666763
No 53
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.49 E-value=0.0086 Score=58.27 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=48.3
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEE-EEeeccC-CcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIG-FVGCALA-STMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~-YV~~eL~-stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+|++||.+.... +. |......-.. ..|+|+|+++ |++.+-. .+|+++.. ..|.. +.+.. +.
T Consensus 183 ~~~i~i~d~dg~~~-~~--lt~~~~~v~~--p~wSPDG~~la~~s~~~~~~~i~i~dl-~tg~~---~~l~~----~~-- 247 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FI--VNRSSQPLMS--PAWSPDGSKLAYVSFENKKSQLVVHDL-RSGAR---KVVAS----FR-- 247 (429)
T ss_pred eEEEEEECCCCCCc-eE--eccCCCcccc--ceEcCCCCEEEEEEecCCCcEEEEEeC-CCCce---EEEec----CC--
Confidence 35788888765432 22 2111111233 4459999865 5554322 34554432 22221 11111 11
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
.....+.+||||++|+++....+.+.+|.+
T Consensus 248 ------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 248 ------GHNGAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred ------CccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence 222467899999999887655566666655
No 54
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.48 E-value=0.009 Score=58.10 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--cEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
...|++||+.+++..+-.... + .-. .+.|+|||++++++..-++ .|+++.. +.+.. + .+... .
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~--g-~~~--~~~~SPDG~~la~~~~~~g~~~Iy~~d~-~~~~~---~--~Lt~~--~-- 289 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFP--G-MTF--APRFSPDGRKVVMSLSQGGNTDIYTMDL-RSGTT---T--RLTDS--P-- 289 (435)
T ss_pred CCEEEEEECCCCcEEEeecCC--C-ccc--CcEECCCCCEEEEEEecCCCceEEEEEC-CCCce---E--EccCC--C--
Confidence 468999999887654322221 1 112 3456999998765543333 3444432 22322 1 11111 0
Q ss_pred ccCCCCCceeEEEEcCCCCEEEE-EeC-CCCcEEEEEe
Q 023927 105 ILPEMPGLITDFLISLDDRFLYF-SNW-LHGDIRQYNI 140 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYV-SNr-g~~sIavfdI 140 (275)
........||||++|+. |+| +...|.++++
T Consensus 290 ------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 290 ------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred ------CccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 12245689999998765 545 3356666665
No 55
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.0023 Score=61.10 Aligned_cols=151 Identities=18% Similarity=0.251 Sum_probs=97.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEE--eCCCCCeeEEEEE-EecCcccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFS--KTQDGSWNHEVAI-SVKSLKVQ 102 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~--~~~~G~~~~~~vi-~i~~~~~~ 102 (275)
.+.+|.+|+++ ++++++|+... ..-.+. +.+|+|+++- +|.+...|.++. +..+|.+.....+ ++ .
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idtnq--~~n~~a--avSP~GRFia-~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-----k 275 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDTNQ--SSNYDA--AVSPDGRFIA-VSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-----K 275 (420)
T ss_pred CCCcEEEEecC-Cceeeeecccc--ccccce--eeCCCCcEEE-EecCCCCceEEEEEeccCcchhhhhhhhee-----c
Confidence 67889999999 99999888642 222233 4599999764 567888888886 4577877554433 32 1
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC----CCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP----KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~----~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
|.. ......++|++-+.. |+--.+|++++||++-. ..|++ |+.-|.|
T Consensus 276 GH~-----saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~-----------------------Lk~g~~p 326 (420)
T KOG2096|consen 276 GHQ-----SAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKI-----------------------LKEGSAP 326 (420)
T ss_pred cch-----hheeeeeeCCCccee-EEEecCCcEEEeeccceEecCCCchH-----------------------hhcCCcc
Confidence 221 234577899999887 44445889999998431 12232 2222223
Q ss_pred ccccCcccCCCCceEEECCCCCEEEEEeC----CCCCccccccccc
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYVTNS----LFSAWDCQFYPEL 220 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyVANs----l~~~wd~Q~yp~~ 220 (275)
..-.|.. |--++|||.|+-|-|+.- +|.+=|-..||++
T Consensus 327 l~aag~~----p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 327 LHAAGSE----PVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred hhhcCCC----ceEEEeCCCCcEEEeecCCceEEEEcccCccchhH
Confidence 2333554 888999999998887652 3445555666665
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.47 E-value=0.0023 Score=64.19 Aligned_cols=166 Identities=17% Similarity=0.267 Sum_probs=104.6
Q ss_pred cCCeEEEEECCCC-CeeEEEECCCCC-c-cceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccc
Q 023927 26 YGRHLFVYSWPDG-ELKQTLDLGNTG-L-IPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 26 ~~d~I~v~d~~~~-k~~~~i~Lg~~G-~-gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~ 102 (275)
+..++.+||+..- +.+|.|+--+.| . .|.. .++|+|+|+. +..+-++++|-.+.+ |.|....++-+-...-.
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nrdg~~-iAagc~DGSIQ~W~~---~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNRDGKL-IAAGCLDGSIQIWDK---GSRTVRPVMKVKDAHLP 363 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCce-eeecCCCcch-hhhcccCCceeeeec---CCcccccceEeeeccCC
Confidence 6788999999875 344544432221 1 1222 4788999998 666667888888865 56777776666543323
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcccc
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ 182 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~ 182 (275)
| ...+-|.+|.||++| +|--.++++.+||+.+..++.. +.+| . .+ +++
T Consensus 364 g-------~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~---~~tg-L--------------~t--~~~---- 411 (641)
T KOG0772|consen 364 G-------QDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLN---VRTG-L--------------PT--PFP---- 411 (641)
T ss_pred C-------CceeEEEeccccchh-hhccCCCceeeeeccccccchh---hhcC-C--------------Cc--cCC----
Confidence 3 467899999999987 4444589999999977555544 2221 0 00 111
Q ss_pred CcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCC
Q 023927 183 GHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEA 251 (275)
Q Consensus 183 G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~ 251 (275)
--+.++|||.+.++...|+-+ .-..+ .++-+| .|+++.-+.|||..
T Consensus 412 -------~tdc~FSPd~kli~TGtS~~~---------~~~~g-~L~f~d------~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 412 -------GTDCCFSPDDKLILTGTSAPN---------GMTAG-TLFFFD------RMTLDTVYKIDIST 457 (641)
T ss_pred -------CCccccCCCceEEEecccccC---------CCCCc-eEEEEe------ccceeeEEEecCCC
Confidence 226799999986666654222 11223 566663 35777778888863
No 57
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0073 Score=57.24 Aligned_cols=111 Identities=23% Similarity=0.364 Sum_probs=75.6
Q ss_pred CccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEE-EEEecCccccccccCCCCCceeEEEEcCCCCEEEE
Q 023927 50 GLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEV-AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYF 127 (275)
Q Consensus 50 G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~-vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYV 127 (275)
-..|-+|+| |||++.+|++-=..+.|+++..+ .+|....+. .+.... -+..|=.+++..||.+=.+
T Consensus 162 ~~~~NGla~--SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----------~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 162 LTIPNGLAF--SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE----------EPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred EEecCceEE--CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC----------CCCCCCceEEeCCCCEEEe
Confidence 346777776 99999999998788889999876 444433332 122211 1245668899999994336
Q ss_pred EeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEE-CCCCCEEEEEe
Q 023927 128 SNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL-SLDGKRLYVTN 206 (275)
Q Consensus 128 SNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~L-SpDGk~LyVAN 206 (275)
+.|+.+.|.+|+ |. +++++++.+- -.+ |-+.++ .|+.++|||++
T Consensus 230 a~~~g~~v~~~~---pd-G~l~~~i~lP---------------------------~~~----~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 230 AVWGGGRVVRFN---PD-GKLLGEIKLP---------------------------VKR----PTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cccCCceEEEEC---CC-CcEEEEEECC---------------------------CCC----CccceEeCCCcCEEEEEe
Confidence 666667999998 34 7888888761 012 455555 67789999999
Q ss_pred C
Q 023927 207 S 207 (275)
Q Consensus 207 s 207 (275)
+
T Consensus 275 ~ 275 (307)
T COG3386 275 A 275 (307)
T ss_pred c
Confidence 4
No 58
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.013 Score=57.02 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=48.4
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCE-EEEeecc-CCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDI-GFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~-~YV~~eL-~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+|+++|.+.....+ +.-+ ...-. ...|+|||++ +|+..+- ..+|+++.. +.|.. +.++- ..
T Consensus 181 ~~~l~~~d~dg~~~~~-lt~~--~~~v~--~p~wSpDG~~lay~s~~~g~~~i~~~dl-~~g~~---~~l~~----~~-- 245 (435)
T PRK05137 181 IKRLAIMDQDGANVRY-LTDG--SSLVL--TPRFSPNRQEITYMSYANGRPRVYLLDL-ETGQR---ELVGN----FP-- 245 (435)
T ss_pred ceEEEEECCCCCCcEE-EecC--CCCeE--eeEECCCCCEEEEEEecCCCCEEEEEEC-CCCcE---EEeec----CC--
Confidence 4578888876544322 2111 11222 3445999986 5665443 245555543 23322 12211 11
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeC--CCCcEEEEEec
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNW--LHGDIRQYNIE 141 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNr--g~~sIavfdI~ 141 (275)
.......+||||+.|+++.. +...|.++++.
T Consensus 246 ------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 246 ------GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred ------CcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 22246679999998865543 33457666763
No 59
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.43 E-value=0.0022 Score=67.10 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=81.5
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
.+| +...+.+||++...++..++|+. .+-+++. |-....+=+.|+ ...+++.... -+++ -..+
T Consensus 510 sa~-~~Gilkfw~f~~k~l~~~l~l~~---~~~~iv~--hr~s~l~a~~~d--df~I~vvD~~-----t~kv----vR~f 572 (910)
T KOG1539|consen 510 SAG-ADGILKFWDFKKKVLKKSLRLGS---SITGIVY--HRVSDLLAIALD--DFSIRVVDVV-----TRKV----VREF 572 (910)
T ss_pred Ecc-CcceEEEEecCCcceeeeeccCC---Ccceeee--eehhhhhhhhcC--ceeEEEEEch-----hhhh----hHHh
Confidence 444 55678999999998888888865 4444443 544443333322 2222221100 0001 1223
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccc
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV 181 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~ 181 (275)
.| +++..+|+.+|||||||-.++ .+.+|++|||- +..++.-+.+ +
T Consensus 573 ~g-----h~nritd~~FS~DgrWlisas-mD~tIr~wDlp---t~~lID~~~v-------------d------------- 617 (910)
T KOG1539|consen 573 WG-----HGNRITDMTFSPDGRWLISAS-MDSTIRTWDLP---TGTLIDGLLV-------------D------------- 617 (910)
T ss_pred hc-----cccceeeeEeCCCCcEEEEee-cCCcEEEEecc---CcceeeeEec-------------C-------------
Confidence 34 458899999999999996655 58899999992 3677766554 0
Q ss_pred cCcccCCCCceEEECCCCCEEEEEe
Q 023927 182 QGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 182 ~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.. +-.+.+||+|.+|-+++
T Consensus 618 --~~----~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 618 --SP----CTSLSFSPNGDFLATVH 636 (910)
T ss_pred --Cc----ceeeEECCCCCEEEEEE
Confidence 11 66899999999999998
No 60
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.43 E-value=0.0057 Score=59.96 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=21.5
Q ss_pred eEEEEcCCCCEEEEEeC--CCCcEEEEEecC
Q 023927 114 TDFLISLDDRFLYFSNW--LHGDIRQYNIED 142 (275)
Q Consensus 114 adI~iSpDgrfLYVSNr--g~~sIavfdI~~ 142 (275)
....+||||++|+.+.. +...|.+|+++.
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 56789999998876654 345788888744
No 61
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.40 E-value=0.0098 Score=57.48 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=71.0
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
.....|++||+..-+.+-+|.. +. +++. +++|||+|..+=...|- +||++.+-..+|.. +.+.- .|.
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~a-H~--~~lA-alafs~~G~llATASeK-GTVIRVf~v~~G~k----l~eFR----RG~ 216 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINA-HK--GPLA-ALAFSPDGTLLATASEK-GTVIRVFSVPEGQK----LYEFR----RGT 216 (391)
T ss_pred CCCceEEEEEcccceeeeEEEe-cC--Ccee-EEEECCCCCEEEEeccC-ceEEEEEEcCCccE----eeeee----CCc
Confidence 3456899999988777777774 22 5564 46789999988888776 78888876555532 22221 232
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.+...+-|.+|||++||=+|. ..++|.+|.++.
T Consensus 217 ----~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 217 ----YPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEK 249 (391)
T ss_pred ----eeeEEEEEEECCCCCeEEEec-CCCeEEEEEecc
Confidence 125778999999999996654 468999999965
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.33 E-value=0.018 Score=53.73 Aligned_cols=187 Identities=13% Similarity=0.192 Sum_probs=111.0
Q ss_pred ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecC
Q 023927 19 QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS 98 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~ 98 (275)
..+..-..+..|.+||....|.++++.... +-.-+ .++|+|.+.-|++-= .-|..+.- +..-....
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~---eni~i--~wsp~g~~~~~~~kd-D~it~id~--------r~~~~~~~ 143 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKG---ENINI--TWSPDGEYIAVGNKD-DRITFIDA--------RTYKIVNE 143 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccC---cceEE--EEcCCCCEEEEecCc-ccEEEEEe--------cccceeeh
Confidence 334444578899999999999999887643 33334 459999987777321 11221111 00000011
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
. ++.-...+|..+.++.+.+.+| |-|.|-+..- | .++.+..+ +.+|..
T Consensus 144 ~--------~~~~e~ne~~w~~~nd~Fflt~-GlG~v~ILsy--p-sLkpv~si--------------------~AH~sn 191 (313)
T KOG1407|consen 144 E--------QFKFEVNEISWNNSNDLFFLTN-GLGCVEILSY--P-SLKPVQSI--------------------KAHPSN 191 (313)
T ss_pred h--------cccceeeeeeecCCCCEEEEec-CCceEEEEec--c-cccccccc--------------------ccCCcc
Confidence 1 1223456888887777665555 5567666554 2 24443333 233311
Q ss_pred ccccCcccCCCCceEEECCCCCEEEE--EeCCCCCccccccccc--ccC---CcEEEEEEeeCCCCCe--eeccceeEec
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYV--TNSLFSAWDCQFYPEL--KEK---GSHMLQIDVNSEKGGM--AINPNFFVDF 249 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyV--ANsl~~~wd~Q~yp~~--~~~---~~~~~~~d~d~~~G~l--~~~~~f~vdf 249 (275)
=--+.++|+|||+-+ |.+|.|-||-|++==. ++. ..--+.+. -+|+| .-.++-+||-
T Consensus 192 -----------CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS---~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 192 -----------CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS---HDGRMLASASEDHFIDI 257 (313)
T ss_pred -----------eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec---cCcceeeccCccceEEe
Confidence 114678999999987 5689999999852110 111 11112232 34777 3778999999
Q ss_pred CCCCCCCcceeeeecCC
Q 023927 250 EAEPDGPALAHEMRYPG 266 (275)
Q Consensus 250 ~~~~~g~~~~h~~r~~g 266 (275)
...+.| -+.|||.-.|
T Consensus 258 A~vetG-d~~~eI~~~~ 273 (313)
T KOG1407|consen 258 AEVETG-DRVWEIPCEG 273 (313)
T ss_pred EecccC-CeEEEeeccC
Confidence 999999 8999997443
No 63
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.22 E-value=0.018 Score=54.60 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=75.9
Q ss_pred cceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCC---CCEEEEE
Q 023927 52 IPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD---DRFLYFS 128 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpD---grfLYVS 128 (275)
-|+.|+| .|||+ +||+ |..+.|+++. .+|.. ...+..++.-...+. ...-.|+++|+ .++|||+
T Consensus 3 ~P~~~a~--~pdG~-l~v~-e~~G~i~~~~--~~g~~-~~~v~~~~~v~~~~~------~gllgia~~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 3 NPRSMAF--LPDGR-LLVA-ERSGRIWVVD--KDGSL-KTPVADLPEVFADGE------RGLLGIAFHPDFASNGYLYVY 69 (331)
T ss_dssp SEEEEEE--ETTSC-EEEE-ETTTEEEEEE--TTTEE-CEEEEE-TTTBTSTT------BSEEEEEE-TTCCCC-EEEEE
T ss_pred CceEEEE--eCCCc-EEEE-eCCceEEEEe--CCCcC-cceeccccccccccc------CCcccceeccccCCCCEEEEE
Confidence 4787666 89974 6776 6799999998 45555 233444431111222 45689999995 6778877
Q ss_pred eCC--------CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCC
Q 023927 129 NWL--------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK 200 (275)
Q Consensus 129 Nrg--------~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk 200 (275)
-.. .+.|..|..++. ...+..... +++. .|. ...+.| .-+.|++.|||
T Consensus 70 ~t~~~~~~~~~~~~v~r~~~~~~-~~~~~~~~~------------l~~~-----~p~--~~~~~H---~g~~l~fgpDG- 125 (331)
T PF07995_consen 70 YTNADEDGGDNDNRVVRFTLSDG-DGDLSSEEV------------LVTG-----LPD--TSSGNH---NGGGLAFGPDG- 125 (331)
T ss_dssp EEEE-TSSSSEEEEEEEEEEETT-SCEEEEEEE------------EEEE-----EES---CSSSS----EEEEEE-TTS-
T ss_pred EEcccCCCCCcceeeEEEeccCC-ccccccceE------------EEEE-----eCC--CCCCCC---CCccccCCCCC-
Confidence 552 267888887553 122221111 1110 000 001223 25679999999
Q ss_pred EEEEEeCCCCCcc---cccccccccCCcEEEEEEee
Q 023927 201 RLYVTNSLFSAWD---CQFYPELKEKGSHMLQIDVN 233 (275)
Q Consensus 201 ~LyVANsl~~~wd---~Q~yp~~~~~~~~~~~~d~d 233 (275)
+|||+-. +..+ .|. ..+....|+|||.|
T Consensus 126 ~LYvs~G--~~~~~~~~~~---~~~~~G~ilri~~d 156 (331)
T PF07995_consen 126 KLYVSVG--DGGNDDNAQD---PNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEB---TTTGGGGCS---TTSSTTEEEEEETT
T ss_pred cEEEEeC--CCCCcccccc---cccccceEEEeccc
Confidence 8999864 2232 232 22346678888754
No 64
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.21 E-value=0.0029 Score=63.43 Aligned_cols=137 Identities=20% Similarity=0.260 Sum_probs=83.9
Q ss_pred CCeEEEEECCCC---CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 27 GRHLFVYSWPDG---ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 27 ~d~I~v~d~~~~---k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
...|.|||+... ..+..++.-..+.=-|. +..+|||+.+-|++| .++|.++.-.+ +...+..
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRS--ckL~pdgrtLivGGe-astlsiWDLAa------------pTprika 503 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRS--CKLLPDGRTLIVGGE-ASTLSIWDLAA------------PTPRIKA 503 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceee--eEecCCCceEEeccc-cceeeeeeccC------------CCcchhh
Confidence 456888998753 23334444333333443 445999999999999 58888886421 1111110
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 183 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G 183 (275)
.++.-...+.++.+|||-|..|.+|- ++.|++||+.+ ..+|.+.. |
T Consensus 504 -eltssapaCyALa~spDakvcFsccs-dGnI~vwDLhn---q~~Vrqfq-----------------------------G 549 (705)
T KOG0639|consen 504 -ELTSSAPACYALAISPDAKVCFSCCS-DGNIAVWDLHN---QTLVRQFQ-----------------------------G 549 (705)
T ss_pred -hcCCcchhhhhhhcCCccceeeeecc-CCcEEEEEccc---ceeeeccc-----------------------------C
Confidence 01111246789999999997766555 78899999944 45554432 1
Q ss_pred cccCCCCceEEECCCCCEEEEEe--CCCCCccc
Q 023927 184 HRLRGGPQMIQLSLDGKRLYVTN--SLFSAWDC 214 (275)
Q Consensus 184 ~~~~g~Pr~~~LSpDGk~LyVAN--sl~~~wd~ 214 (275)
.+ -|---+.||+||.+|+..- +-+.-||-
T Consensus 550 ht--DGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 550 HT--DGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred CC--CCceeEEecCCCceeecCCCccceeehhh
Confidence 11 1234788999999998753 12344663
No 65
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.026 Score=57.00 Aligned_cols=124 Identities=12% Similarity=0.178 Sum_probs=85.1
Q ss_pred CccC-CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEe-eccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 24 GLYG-RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVG-CALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 24 g~~~-d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~-~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
.+|| .++|+++++. ....++| ...||.|= +.++|+++..=|+ +=+.++|..|.. ....+..++...
T Consensus 246 SYYGEq~Lyll~t~g--~s~~V~L--~k~GPVhd-v~W~~s~~EF~VvyGfMPAkvtifnl------r~~~v~df~egp- 313 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQG--ESVSVPL--LKEGPVHD-VTWSPSGREFAVVYGFMPAKVTIFNL------RGKPVFDFPEGP- 313 (566)
T ss_pred cccccceEEEEEecC--ceEEEec--CCCCCceE-EEECCCCCEEEEEEecccceEEEEcC------CCCEeEeCCCCC-
Confidence 3444 6788888872 2234566 35699994 5689999754444 346677777753 223444555322
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCC--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg--~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
=.++..||-|+.|-++-.| .|+|.+||+.+ -++++.+..-
T Consensus 314 -----------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~------------------------ 355 (566)
T KOG2315|consen 314 -----------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAA------------------------ 355 (566)
T ss_pred -----------ccceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccC------------------------
Confidence 1588999999999999986 69999999954 5666555431
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEe
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+ ---|..+|||+|+++|.
T Consensus 356 ---~------tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 356 ---N------TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ---C------ceEEEEcCCCcEEEEEe
Confidence 2 23689999999999997
No 66
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.02 E-value=0.013 Score=61.13 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=88.3
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
++..=.|++|++.+++++..+. |++ ||.+ .+.|+|.+..++-+ --+.||-.+...+ .+....++.+.
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLs-GHE--gPVs-~l~f~~~~~~LaS~-SWDkTVRiW~if~--s~~~vEtl~i~------ 520 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILS-GHE--GPVS-GLSFSPDGSLLASG-SWDKTVRIWDIFS--SSGTVETLEIR------ 520 (893)
T ss_pred ccceEEEEEEEeecCeeeehhc-CCC--Ccce-eeEEccccCeEEec-cccceEEEEEeec--cCceeeeEeec------
Confidence 5566689999999999976443 333 6775 34569999976654 4445555443211 12222222222
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe-----cceeecCCceeeecCCCCCCCCCC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV-----GGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~-----gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
.-..++.++||||.|-|+.= .+.|+.||+.. ...++.|.. +|...+| .+..+
T Consensus 521 -------sdvl~vsfrPdG~elaVaTl-dgqItf~d~~~---~~q~~~IdgrkD~~~gR~~~D---------~~ta~--- 577 (893)
T KOG0291|consen 521 -------SDVLAVSFRPDGKELAVATL-DGQITFFDIKE---AVQVGSIDGRKDLSGGRKETD---------RITAE--- 577 (893)
T ss_pred -------cceeEEEEcCCCCeEEEEEe-cceEEEEEhhh---ceeeccccchhhccccccccc---------eeehh---
Confidence 34578999999999988865 78999999855 333333322 2222111 11111
Q ss_pred ccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
...+|+. =-.+++|+||+.++++-
T Consensus 578 ~sa~~K~----Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 578 NSAKGKT----FTTICYSADGKCILAGG 601 (893)
T ss_pred hcccCCc----eEEEEEcCCCCEEEecC
Confidence 2235665 55789999999999986
No 67
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.01 E-value=0.064 Score=52.65 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=47.6
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeecc--CCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCAL--ASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL--~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
...|+++|+.+++..+-... .|. .. ...++|||+++.+...- ...|+++.. +.|.+ ++ ++-.+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~--~g~-~~--~~~~SPDG~~la~~~~~~g~~~Iy~~dl-~~g~~--~~-LT~~~~----- 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASS--QGM-LV--VSDVSKDGSKLLLTMAPKGQPDIYLYDT-NTKTL--TQ-ITNYPG----- 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecC--CCc-EE--eeEECCCCCEEEEEEccCCCcEEEEEEC-CCCcE--EE-cccCCC-----
Confidence 45799999988766543332 111 12 22359999876554322 244555543 22322 11 211110
Q ss_pred ccCCCCCceeEEEEcCCCCEEEE-EeCC-CCcEEEEEe
Q 023927 105 ILPEMPGLITDFLISLDDRFLYF-SNWL-HGDIRQYNI 140 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYV-SNrg-~~sIavfdI 140 (275)
.-..-..||||+.||. |+|+ .-.|.++++
T Consensus 278 -------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 278 -------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred -------ccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 1123369999986655 5553 235666665
No 68
>PTZ00421 coronin; Provisional
Probab=96.97 E-value=0.18 Score=50.66 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=63.7
Q ss_pred ccCCccCCeEEEEECCCCCeeE-----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEE
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQ-----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAIS 95 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~-----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~ 95 (275)
++.+-....|.+||+.++.... ...|.........+ .|||++....+++..+++|.++... ++. ....
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l--~f~P~~~~iLaSgs~DgtVrIWDl~-tg~----~~~~ 163 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV--SFHPSAMNVLASAGADMVVNVWDVE-RGK----AVEV 163 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEE--EeCcCCCCEEEEEeCCCEEEEEECC-CCe----EEEE
Confidence 4445567889999998753211 12232222233444 4599987666677778888877652 221 1112
Q ss_pred ecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 96 VKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 96 i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+. +. ......|.+||||+.|..+++ ++.|.+||+..
T Consensus 164 l~-----~h-----~~~V~sla~spdG~lLatgs~-Dg~IrIwD~rs 199 (493)
T PTZ00421 164 IK-----CH-----SDQITSLEWNLDGSLLCTTSK-DKKLNIIDPRD 199 (493)
T ss_pred Ec-----CC-----CCceEEEEEECCCCEEEEecC-CCEEEEEECCC
Confidence 21 11 134578999999998876665 78999999854
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.94 E-value=0.0059 Score=59.98 Aligned_cols=99 Identities=20% Similarity=0.369 Sum_probs=64.6
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC--CCeeEEEEEEecC
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD--GSWNHEVAISVKS 98 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~--G~~~~~~vi~i~~ 98 (275)
+++| ....+..||++++.......-+ .|..+-. +++-|||.+ ||.+--+.+++.+.-+.+ +.|+-..+
T Consensus 285 laCg-~~e~~~lwDv~tgd~~~~y~~~-~~~S~~s--c~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~----- 354 (519)
T KOG0293|consen 285 LACG-FDEVLSLWDVDTGDLRHLYPSG-LGFSVSS--CAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRD----- 354 (519)
T ss_pred EecC-chHheeeccCCcchhhhhcccC-cCCCcce--eEEccCCce-eEecCCCCcEEEecCCcchhhccccccc-----
Confidence 3555 4455899999988654322222 1334443 455999998 666666677777765432 45532221
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
....|++|++||++||..+ -+-.|+.|+..+
T Consensus 355 ------------~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 355 ------------PKVHDLAITYDGKYVLLVT-VDKKIRLYNREA 385 (519)
T ss_pred ------------ceeEEEEEcCCCcEEEEEe-cccceeeechhh
Confidence 2457999999999999998 467888888744
No 70
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.93 E-value=0.035 Score=54.47 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=48.0
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC--cEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS--TMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
...+|++++++.++..+-... ++ ......|+|||+++|....-.+ .|+++.- +.|.. ++ ++. .|
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~--~~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl-~~g~~--~r-lt~-----~g 320 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNY--PG---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL-NSGSV--EQ-VVF-----HG 320 (419)
T ss_pred CCcEEEEEECCCCcEEEcccC--CC---ccCccEECCCCCEEEEEECCCCCceEEEEEC-CCCCe--Ee-Ccc-----CC
Confidence 356899999988765432221 11 1112235999987766654333 3333322 22222 11 111 11
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCC--------CcEEEEEe
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLH--------GDIRQYNI 140 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~--------~sIavfdI 140 (275)
. ....+||||++|..+.+.. ..|.++++
T Consensus 321 ~---------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 321 K---------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred C---------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 1 1237999999886665532 35666666
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.032 Score=52.83 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=74.8
Q ss_pred Cccccc--cCCccCCeEEEEECCCC--CeeEEEECC-CCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeE
Q 023927 16 FNLQHV--SDGLYGRHLFVYSWPDG--ELKQTLDLG-NTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNH 90 (275)
Q Consensus 16 ~~~~~~--~~g~~~d~I~v~d~~~~--k~~~~i~Lg-~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~ 90 (275)
|+|+.| +.+..+..|.+||+..= ..-+++.++ ++-.-+-+|.| +|+||++-++.+- +.+.++.- =+|. .
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~F--S~dGK~iLlsT~~-s~~~~lDA-f~G~--~ 221 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEF--SPDGKSILLSTNA-SFIYLLDA-FDGT--V 221 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEE--cCCCCEEEEEeCC-CcEEEEEc-cCCc--E
Confidence 455554 44556669999999873 466677775 33456667777 9999999999775 44444421 1344 3
Q ss_pred EEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 91 EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 91 ~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
++..+..+.. + +.+.+-..+||++|+ .+.-..++|.+|++..
T Consensus 222 ~~tfs~~~~~--~-------~~~~~a~ftPds~Fv-l~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 222 KSTFSGYPNA--G-------NLPLSATFTPDSKFV-LSGSDDGTIHVWNLET 263 (311)
T ss_pred eeeEeeccCC--C-------CcceeEEECCCCcEE-EEecCCCcEEEEEcCC
Confidence 4444444321 1 455788899999999 5667789999999944
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.061 Score=53.49 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=74.2
Q ss_pred cCCCcCCcCCCccccc-----cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEE
Q 023927 6 WGAPLAFTKGFNLQHV-----SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRF 80 (275)
Q Consensus 6 ~~~p~~~~~g~~~~~~-----~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~ 80 (275)
.|.+..+..=|.+++. .+|.. ..|++.-.+++.++-++++.. .-.. |+|+-+++++|++|+-+ +|+++
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~-G~I~lLhakT~eli~s~KieG---~v~~--~~fsSdsk~l~~~~~~G-eV~v~ 371 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNN-GHIHLLHAKTKELITSFKIEG---VVSD--FTFSSDSKELLASGGTG-EVYVW 371 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccC-ceEEeehhhhhhhhheeeecc---EEee--EEEecCCcEEEEEcCCc-eEEEE
Confidence 3555556666766664 45644 458998888999999999853 2333 56699999999999985 99998
Q ss_pred EeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 81 SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 81 ~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
..... .++..--. +|- -+.+.|++|++|+|| ++--..|-|.+|+-
T Consensus 372 nl~~~------~~~~rf~D--~G~------v~gts~~~S~ng~yl-A~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 372 NLRQN------SCLHRFVD--DGS------VHGTSLCISLNGSYL-ATGSDSGIVNIYDG 416 (514)
T ss_pred ecCCc------ceEEEEee--cCc------cceeeeeecCCCceE-EeccCcceEEEecc
Confidence 75322 22211100 121 255788899999933 44445688888884
No 73
>PTZ00420 coronin; Provisional
Probab=96.74 E-value=0.18 Score=51.71 Aligned_cols=103 Identities=9% Similarity=0.049 Sum_probs=64.3
Q ss_pred ccCCccCCeEEEEECCCCCe-eE-----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEE
Q 023927 21 VSDGLYGRHLFVYSWPDGEL-KQ-----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAI 94 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~-~~-----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi 94 (275)
++.+-....|.+||+.++.. .. ...+......... +.|||++..+.+++..+.+|.++... ++. .+.
T Consensus 90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s--Vaf~P~g~~iLaSgS~DgtIrIWDl~-tg~----~~~ 162 (568)
T PTZ00420 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI--IDWNPMNYYIMCSSGFDSFVNIWDIE-NEK----RAF 162 (568)
T ss_pred EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE--EEECCCCCeEEEEEeCCCeEEEEECC-CCc----EEE
Confidence 34455677899999986421 11 1122222222333 45599999888888888888877652 222 112
Q ss_pred EecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 95 SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 95 ~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.+.. +.....+.+|+||+.|.+++. .+.|.+||+..
T Consensus 163 ~i~~-----------~~~V~SlswspdG~lLat~s~-D~~IrIwD~Rs 198 (568)
T PTZ00420 163 QINM-----------PKKLSSLKWNIKGNLLSGTCV-GKHMHIIDPRK 198 (568)
T ss_pred EEec-----------CCcEEEEEECCCCCEEEEEec-CCEEEEEECCC
Confidence 2211 124578999999999977775 67899999844
No 74
>PTZ00420 coronin; Provisional
Probab=96.73 E-value=0.17 Score=51.91 Aligned_cols=138 Identities=10% Similarity=0.030 Sum_probs=77.6
Q ss_pred eEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCe-eE--EEEEEecCccccccc
Q 023927 29 HLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSW-NH--EVAISVKSLKVQNWI 105 (275)
Q Consensus 29 ~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~-~~--~~vi~i~~~~~~g~~ 105 (275)
.|.+|+......+. .+.........+. |+|+.....+++..+++|.++.....+.. .. ..+..+ .+.
T Consensus 55 vI~L~~~~r~~~v~--~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-----~gH- 124 (568)
T PTZ00420 55 AIRLENQMRKPPVI--KLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-----KGH- 124 (568)
T ss_pred EEEeeecCCCceEE--EEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-----ecC-
Confidence 45555544433322 2322233344444 59984444555556788877765322211 00 001111 111
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
......|.++|+++.+.+|.-.+++|.+||+... +.+-.+.. +..
T Consensus 125 ----~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg---~~~~~i~~----------------------------~~~ 169 (568)
T PTZ00420 125 ----KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE---KRAFQINM----------------------------PKK 169 (568)
T ss_pred ----CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC---cEEEEEec----------------------------CCc
Confidence 1356799999999999888878899999999542 22222211 111
Q ss_pred cCCCCceEEECCCCCEEEEEe--CCCCCcccc
Q 023927 186 LRGGPQMIQLSLDGKRLYVTN--SLFSAWDCQ 215 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVAN--sl~~~wd~Q 215 (275)
...++++|||+.|.++. .-+.-||..
T Consensus 170 ----V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 170 ----LSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred ----EEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 66899999999887774 234456544
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.036 Score=53.18 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=84.4
Q ss_pred CCeEEEEECCCCCeeE----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC--CCCCeeEEEEEEecCcc
Q 023927 27 GRHLFVYSWPDGELKQ----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSLK 100 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~--~~G~~~~~~vi~i~~~~ 100 (275)
...|.+|+++.=.... ++.+. .+ -|--++ |.||.+-.-|.+..++++.+|..+ .+|.+...-+ .++...
T Consensus 107 Dr~Ir~w~~~DF~~~eHr~~R~nve-~d-hpT~V~--FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v-~~D~~~ 181 (420)
T KOG2096|consen 107 DRSIRLWDVRDFENKEHRCIRQNVE-YD-HPTRVV--FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV-HIDNLE 181 (420)
T ss_pred CceEEEEecchhhhhhhhHhhcccc-CC-CceEEE--ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc-cccccc
Confidence 4568888887621111 23342 12 355455 599999999999999999999753 4565543322 122111
Q ss_pred ccc-cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 101 VQN-WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 101 ~~g-~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
+.. .. ...-+|-|.-.++|| .|+-.+++|..|+. ++++++.|.+..
T Consensus 182 f~~kh~-----v~~i~iGiA~~~k~i-msas~dt~i~lw~l----kGq~L~~idtnq----------------------- 228 (420)
T KOG2096|consen 182 FERKHQ-----VDIINIGIAGNAKYI-MSASLDTKICLWDL----KGQLLQSIDTNQ----------------------- 228 (420)
T ss_pred cchhcc-----cceEEEeecCCceEE-EEecCCCcEEEEec----CCceeeeecccc-----------------------
Confidence 110 00 122356677777776 78888999999997 377878777621
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEe
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.. =.|-++|||||+|.++-
T Consensus 229 ----~~----n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 229 ----SS----NYDAAVSPDGRFIAVSG 247 (420)
T ss_pred ----cc----ccceeeCCCCcEEEEec
Confidence 11 34779999999988864
No 76
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.65 E-value=0.07 Score=51.06 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=52.5
Q ss_pred cCCeEEEEECCC--CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCee-EEEEE-EecCcc
Q 023927 26 YGRHLFVYSWPD--GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWN-HEVAI-SVKSLK 100 (275)
Q Consensus 26 ~~d~I~v~d~~~--~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~-~~~vi-~i~~~~ 100 (275)
.+++|.+++-+. ++.-....+...-..|..+++ +++| +||++. ..|+++... .+|.-. ..+++ +-.+..
T Consensus 45 ~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~--~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~ 118 (367)
T TIGR02604 45 LGDRILILEDADGDGKYDKSNVFAEELSMVTGLAV--AVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ 118 (367)
T ss_pred CCCEEEEEEcCCCCCCcceeEEeecCCCCccceeE--ecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC
Confidence 456888887653 333221122112236788776 8888 999864 568877643 344443 23333 222211
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWL 131 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg 131 (275)
... ....+..+.+.|||+ ||+|.-.
T Consensus 119 ~~~-----~~~~~~~l~~gpDG~-LYv~~G~ 143 (367)
T TIGR02604 119 INN-----HHHSLNSLAWGPDGW-LYFNHGN 143 (367)
T ss_pred CCc-----ccccccCceECCCCC-EEEeccc
Confidence 000 013467999999996 9998763
No 77
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.077 Score=51.65 Aligned_cols=150 Identities=19% Similarity=0.234 Sum_probs=82.3
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
.+.....+|.+||.+++.-+.-+..+.. |.--++ ++||+.++|... -+.++++.. ++..|+.+.-+.. +
T Consensus 212 tAS~gsssi~iWdpdtg~~~pL~~~glg--g~slLk--wSPdgd~lfaAt--~davfrlw~-e~q~wt~erw~lg-s--- 280 (445)
T KOG2139|consen 212 TASFGSSSIMIWDPDTGQKIPLIPKGLG--GFSLLK--WSPDGDVLFAAT--CDAVFRLWQ-ENQSWTKERWILG-S--- 280 (445)
T ss_pred ecccCcceEEEEcCCCCCcccccccCCC--ceeeEE--EcCCCCEEEEec--ccceeeeeh-hcccceecceecc-C---
Confidence 3455667899999999865432323221 222334 599999998873 255666653 2234544433322 1
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC-eEEEEEEecceeecCCceeeecCCCCCCCCCCcc
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP-VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE 180 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~-~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~ 180 (275)
+....-.-||+||||..++-+.-.| |.+.-+++. .+.+ .+++. .+..+- +| +....
T Consensus 281 ---------grvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~---~~~~k----~~llia--DL---~e~ti 337 (445)
T KOG2139|consen 281 ---------GRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLR---PQSIK----RVLLIA--DL---QEVTI 337 (445)
T ss_pred ---------CceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccC---cccce----eeeeec--cc---hhhhh
Confidence 2334456899999999999876544 444332222 2210 01100 011111 11 11122
Q ss_pred ccCcccC-CCCceEEECCCCCEEEEE
Q 023927 181 VQGHRLR-GGPQMIQLSLDGKRLYVT 205 (275)
Q Consensus 181 ~~G~~~~-g~Pr~~~LSpDGk~LyVA 205 (275)
..|+++- |.++-|+.+|.|.||-|.
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEE
Confidence 2344444 479999999999999885
No 78
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.63 E-value=0.18 Score=50.96 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=88.7
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
...++.+||+.++++++++.++.. ..=..+-+++- +...+=|+ |+++|..+... ++. ..+++ .|..
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWq-kd~lItVS--l~G~in~ln~~-d~~--~~~~i-------~GHn 320 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQ-KDHLITVS--LSGTINYLNPS-DPS--VLKVI-------SGHN 320 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCc-hhceEEEEEEe-CCeEEEEE--cCcEEEEeccc-CCC--hhhee-------cccc
Confidence 456789999999999999998742 11112223333 44444333 77777777542 221 22222 2321
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEE--------EE-ec-cee---ecCCceeeecCCCC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQ--------IW-VG-GLF---RKGSPVVAVTDDGQ 172 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~--------v~-~g-G~~---~~~~~~~v~~~~~~ 172 (275)
...+++.+|+|+++||-... ++.|.-|++....+-+|.++ +. .. |.+ .=|-.++++.-+.-
T Consensus 321 -----K~ITaLtv~~d~~~i~Sgsy-DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 321 -----KSITALTVSPDGKTIYSGSY-DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred -----cceeEEEEcCCCCEEEeecc-CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccC
Confidence 35689999999999996544 67788888865433333211 11 11 111 11223333321111
Q ss_pred CCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 173 PYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 173 ~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.+.-.....-|.+ |.-++.++||..+.||+
T Consensus 395 ~~t~~~~~~lg~Q----P~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQ----PKGLAVLSDGGTAVVAC 424 (603)
T ss_pred cccccceeecCCC----ceeEEEcCCCCEEEEEe
Confidence 1111112345666 99999999999999999
No 79
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.57 E-value=0.12 Score=52.28 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=77.3
Q ss_pred cCCeEEEEECCCCCeeE--EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 26 YGRHLFVYSWPDGELKQ--TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~--~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
+.|+|.+.++..+.... .++|+ +.|+.++. .+++..+-|.|. +.|.++.. . ..+.+++ ..
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg---~QP~~lav--~~d~~~avv~~~--~~iv~l~~-~------~~~~~~~-~~--- 443 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLG---SQPKGLAV--LSDGGTAVVACI--SDIVLLQD-Q------TKVSSIP-IG--- 443 (603)
T ss_pred cCCeEEEEecccCcccccceeecC---CCceeEEE--cCCCCEEEEEec--CcEEEEec-C------Ccceeec-cc---
Confidence 56777777776554333 24554 48998765 899999988877 44554431 0 1222332 12
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG 183 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G 183 (275)
-.++.+++|||+.++-|--- ++.|.+|.++... |...... .
T Consensus 444 -------y~~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~~---l~ee~~~-------------~--------------- 484 (603)
T KOG0318|consen 444 -------YESSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGDE---LKEEAKL-------------L--------------- 484 (603)
T ss_pred -------cccceEEEcCCCCEEEEecc-cceEEEEEecCCc---ccceeee-------------e---------------
Confidence 35689999999998766544 4669999996632 2111110 0
Q ss_pred cccCCCCceEEECCCCCEEEEEe
Q 023927 184 HRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 184 ~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.-.|-+-.++.||||+||-++.
T Consensus 485 -~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 485 -EHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred -cccCCceEEEECCCCcEEEEec
Confidence 0012278999999999999887
No 80
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.56 E-value=0.013 Score=56.23 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=94.9
Q ss_pred CccCCeEEEEECCCCCeeEEEE---CCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC------------CCe
Q 023927 24 GLYGRHLFVYSWPDGELKQTLD---LGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD------------GSW 88 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~---Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~------------G~~ 88 (275)
..-..-||+||+-++++-.... --.+=.+... +.|+|||.++|.+ ..+.|-+|.-... |++
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhs--L~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHS--LQFSPDGEQLFAG--YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhhee--EEecCCCCeEeec--ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 3345678999998887754221 1111123333 4459999988876 6677777754221 333
Q ss_pred eEEEEEEec---Ccccc-------ccc--------------cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 023927 89 NHEVAISVK---SLKVQ-------NWI--------------LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 144 (275)
Q Consensus 89 ~~~~vi~i~---~~~~~-------g~~--------------~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~ 144 (275)
..+-+|+.. |-.-. +.. +..-++..+.+...+||..||+-.|-.+.|-+|||..-.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 334343322 22110 000 002456788999999999999999999999999996533
Q ss_pred CCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEE--eCCCCCcccccc
Q 023927 145 NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWDCQFY 217 (275)
Q Consensus 145 ~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVA--Nsl~~~wd~Q~y 217 (275)
.+.. .+++.. + ..+.+- -|-|+|+|++|--. .-+.+-||.+.|
T Consensus 285 ~pv~----~L~rhv------------------~--~TNQRI------~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 285 DPVY----ALERHV------------------G--DTNQRI------LFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred chhh----hhhhhc------------------c--CccceE------EEecCCCCceeeccCCCccEEEEecCCC
Confidence 3322 111110 0 001122 57889999988764 457788998875
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.50 E-value=0.11 Score=48.53 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=91.6
Q ss_pred CcCCcCCCccccc---cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC
Q 023927 9 PLAFTKGFNLQHV---SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD 85 (275)
Q Consensus 9 p~~~~~g~~~~~~---~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~ 85 (275)
++.|-.|+..-.- .-.-..+...+||.++-+.+.++... +.|+ +++ .+++++|++.. ++.+..+..
T Consensus 88 ~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~EGW-GLt----~dg~~Li~SDG-S~~L~~~dP--- 156 (264)
T PF05096_consen 88 PRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--GEGW-GLT----SDGKRLIMSDG-SSRLYFLDP--- 156 (264)
T ss_dssp TT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-S--SS---EEE----ECSSCEEEE-S-SSEEEEE-T---
T ss_pred ccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecC--Ccce-EEE----cCCCEEEEECC-ccceEEECC---
Confidence 3456667665331 11234466778888777777788774 3343 333 67888999876 566666653
Q ss_pred CCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCcee
Q 023927 86 GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVV 165 (275)
Q Consensus 86 G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~ 165 (275)
.+++....+.+..... .+ ....++-.- +.+||+..|..+.|+++| |.++++++.+.+.+..+..
T Consensus 157 ~~f~~~~~i~V~~~g~---pv----~~LNELE~i--~G~IyANVW~td~I~~Id---p~tG~V~~~iDls~L~~~~---- 220 (264)
T PF05096_consen 157 ETFKEVRTIQVTDNGR---PV----SNLNELEYI--NGKIYANVWQTDRIVRID---PETGKVVGWIDLSGLRPEV---- 220 (264)
T ss_dssp TT-SEEEEEE-EETTE---E-------EEEEEEE--TTEEEEEETTSSEEEEEE---TTT-BEEEEEE-HHHHHHH----
T ss_pred cccceEEEEEEEECCE---EC----CCcEeEEEE--cCEEEEEeCCCCeEEEEe---CCCCeEEEEEEhhHhhhcc----
Confidence 2577777776552211 11 123444443 457999999999999988 5679999999887765320
Q ss_pred eecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 166 AVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 166 v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
. ......+.. . --+.+|.+|.+++||||-
T Consensus 221 --~-~~~~~~~~~-----d----VLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 --G-RDKSRQPDD-----D----VLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp --T-STTST--TT-----S-----EEEEEEETTTTEEEEEE
T ss_pred --c-ccccccccC-----C----eeEeEeEeCCCCEEEEEe
Confidence 0 000011111 1 256789999999999999
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.49 E-value=0.045 Score=51.22 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=81.6
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..+...|.|.++|..+.|...+....- --.++.+ +-+....|+.+.| ++|-.+.|. .++..+.|..-
T Consensus 122 ~~~~kdD~it~id~r~~~~~~~~~~~~---e~ne~~w--~~~nd~Fflt~Gl-G~v~ILsyp---sLkpv~si~AH---- 188 (313)
T KOG1407|consen 122 AVGNKDDRITFIDARTYKIVNEEQFKF---EVNEISW--NNSNDLFFLTNGL-GCVEILSYP---SLKPVQSIKAH---- 188 (313)
T ss_pred EEecCcccEEEEEecccceeehhcccc---eeeeeee--cCCCCEEEEecCC-ceEEEEecc---ccccccccccC----
Confidence 556678899999998887765444321 2234444 8777777777777 778777763 34333333221
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccc
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV 181 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~ 181 (275)
+..+--|.++|||||+=+ ---+-.++.||+++--..+.+ +|
T Consensus 189 --------~snCicI~f~p~GryfA~-GsADAlvSLWD~~ELiC~R~i---------sR--------------------- 229 (313)
T KOG1407|consen 189 --------PSNCICIEFDPDGRYFAT-GSADALVSLWDVDELICERCI---------SR--------------------- 229 (313)
T ss_pred --------CcceEEEEECCCCceEee-ccccceeeccChhHhhhheee---------cc---------------------
Confidence 156778999999998744 333567888998552222221 11
Q ss_pred cCcccCCCCceEEECCCCCEEEEEe
Q 023927 182 QGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 182 ~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
=.+ .-|-+.+|-|||+|--|.
T Consensus 230 -ldw---pVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 230 -LDW---PVRTLSFSHDGRMLASAS 250 (313)
T ss_pred -ccC---ceEEEEeccCcceeeccC
Confidence 001 257899999999887776
No 83
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.45 E-value=0.039 Score=55.49 Aligned_cols=135 Identities=15% Similarity=0.120 Sum_probs=93.5
Q ss_pred ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC-CCeeEEEEEEec
Q 023927 19 QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVK 97 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~-G~~~~~~vi~i~ 97 (275)
+.++.+.-|..|.+-.++++...-++..+ .|..-|+++| ||..+++.++..-.++|.++..... -.+.+.++-+
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~-sgqsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs-- 208 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTID-SGQSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS-- 208 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecC-CCCeEEEeec--ccccceeeEeeccCCeEEEEeccCCCcccchhhhcc--
Confidence 34455666777888888777555555553 4778899997 9999999999888888888864211 1111111111
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCC
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD 177 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~ 177 (275)
+-+++|.+||...-|+||--.+-.|-.||+.. .+++..+.- .+|
T Consensus 209 -------------AP~~gicfspsne~l~vsVG~Dkki~~yD~~s---~~s~~~l~y-------------------~~P- 252 (673)
T KOG4378|consen 209 -------------APCRGICFSPSNEALLVSVGYDKKINIYDIRS---QASTDRLTY-------------------SHP- 252 (673)
T ss_pred -------------CCcCcceecCCccceEEEecccceEEEeeccc---ccccceeee-------------------cCC-
Confidence 23579999999999999999999999999954 223222211 011
Q ss_pred CccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 178 VPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 178 ~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
=-.++++++|.+|.+.|
T Consensus 253 ------------lstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 253 ------------LSTVAFSECGTYLCAGN 269 (673)
T ss_pred ------------cceeeecCCceEEEeec
Confidence 23689999999999998
No 84
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=96.44 E-value=0.01 Score=40.36 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.3
Q ss_pred EEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 117 LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 117 ~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
.|.-.|.++||+.+. +.+.++||++|.+|++++++.|
T Consensus 6 ~v~v~g~yaYva~~~-~Gl~IvDISnPs~P~~v~~~~T 42 (42)
T PF08309_consen 6 DVAVSGNYAYVADGN-NGLVIVDISNPSNPVLVGSYDT 42 (42)
T ss_pred EEEEECCEEEEEeCC-CCEEEEECCCCCCCEEEEEecC
Confidence 355567899999775 5689999999999999998753
No 85
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.048 Score=54.23 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=54.5
Q ss_pred EEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCC
Q 023927 30 LFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEM 109 (275)
Q Consensus 30 I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~ 109 (275)
++.||+.++|+.+--.+.....--.+ +|..+|+++++-+. ...+-|.+++-. .+.| | ... .+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e-~FeVShd~~fia~~-G~~G~I~lLhak-T~el-----i-------~s~---Ki 343 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSME-RFEVSHDSNFIAIA-GNNGHIHLLHAK-TKEL-----I-------TSF---KI 343 (514)
T ss_pred EEEeeccccccccccCCCCcccchhh-eeEecCCCCeEEEc-ccCceEEeehhh-hhhh-----h-------hee---ee
Confidence 67788887776542222110000111 47778888843322 333444444321 1111 1 011 13
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 110 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 110 ~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
++..+++.+|-|+|.||+||- .+.|.+|++..+
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN 376 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc
Confidence 367899999999999999986 559999999553
No 86
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.38 E-value=0.23 Score=49.04 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=77.3
Q ss_pred cCCccCCeEEEEECCCCC--eeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 22 SDGLYGRHLFVYSWPDGE--LKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k--~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
+.+-....+.+|++...+ +++.. ...-.+-+.+ .|+|+++ .-+.+..+.+|.++.-..++ ...+++
T Consensus 175 ~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~--~fs~d~~-~l~s~s~D~tiriwd~~~~~--~~~~~l----- 242 (456)
T KOG0266|consen 175 AAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDV--AFSPDGS-YLLSGSDDKTLRIWDLKDDG--RNLKTL----- 242 (456)
T ss_pred EEccCCCcEEEeecccccchhhccc--cccccceeee--EECCCCc-EEEEecCCceEEEeeccCCC--eEEEEe-----
Confidence 334456777888886555 33322 1223344444 4599999 33444445555555431211 111222
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
.| ..+..+.+.++|+| -|.+|...+++|++|++.. .+.+..+....
T Consensus 243 --~g-----H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs----------------------- 288 (456)
T KOG0266|consen 243 --KG-----HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---GECVRKLKGHS----------------------- 288 (456)
T ss_pred --cC-----CCCceEEEEecCCC-CEEEEecCCCcEEEEeccC---CeEEEeeeccC-----------------------
Confidence 11 12456899999999 6889999999999999954 44544333210
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEe
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.+ =..+++++||++|.++.
T Consensus 289 --~~------is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 289 --DG------ISGLAFSPDGNLLVSAS 307 (456)
T ss_pred --Cc------eEEEEECCCCCEEEEcC
Confidence 01 23678999999887773
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.33 E-value=0.31 Score=45.51 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=74.5
Q ss_pred CcCCcCCCcc-cc--c--cCCccCC-eEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEe
Q 023927 9 PLAFTKGFNL-QH--V--SDGLYGR-HLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSK 82 (275)
Q Consensus 9 p~~~~~g~~~-~~--~--~~g~~~d-~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~ 82 (275)
|..|-.||-. .+ + ..|+||. +|..+|+++++.++..+|++. .=-=+++. + +..+|...=-+...+++..
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~-~---~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITI-L---GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEE-E---TTEEEEEESSSSEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEE-E---CCEEEEEEecCCeEEEEcc
Confidence 5567777766 32 2 4477774 699999999999999999642 11113333 2 5678888777777777764
Q ss_pred CCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 83 TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 83 ~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
+ .++.....+.+. +||. |..||+.||+|+. .+.|..+| |.+.+.+++|.+
T Consensus 118 ~---tl~~~~~~~y~~---EGWG------------Lt~dg~~Li~SDG-S~~L~~~d---P~~f~~~~~i~V 167 (264)
T PF05096_consen 118 N---TLKKIGTFPYPG---EGWG------------LTSDGKRLIMSDG-SSRLYFLD---PETFKEVRTIQV 167 (264)
T ss_dssp T---TTEEEEEEE-SS---S--E------------EEECSSCEEEE-S-SSEEEEE----TTT-SEEEEEE-
T ss_pred c---cceEEEEEecCC---cceE------------EEcCCCEEEEECC-ccceEEEC---CcccceEEEEEE
Confidence 2 576677776652 6772 3389999999987 66777666 556777777665
No 88
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.33 E-value=0.14 Score=44.92 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCccCCeEEEEECCCCCeeEEEECCCCCccce-EEEEEeCCCCCEEEEee--ccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 23 DGLYGRHLFVYSWPDGELKQTLDLGNTGLIPL-EIRFLHDPSKDIGFVGC--ALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 23 ~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~-~v~f~f~P~g~~~YV~~--eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
.|....+|.+||++ .+.+. .++. .++ .|. |+|+|+++-+++ .+.+.|-.+... +. +.+.....
T Consensus 78 ~g~~~~~v~lyd~~-~~~i~--~~~~---~~~n~i~--wsP~G~~l~~~g~~n~~G~l~~wd~~---~~--~~i~~~~~- 143 (194)
T PF08662_consen 78 YGSMPAKVTLYDVK-GKKIF--SFGT---QPRNTIS--WSPDGRFLVLAGFGNLNGDLEFWDVR---KK--KKISTFEH- 143 (194)
T ss_pred EccCCcccEEEcCc-ccEeE--eecC---CCceEEE--ECCCCCEEEEEEccCCCcEEEEEECC---CC--EEeecccc-
Confidence 35556689999996 33333 3432 333 444 599999888875 344455554432 11 22222110
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeC-----CCCcEEEEEe
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNW-----LHGDIRQYNI 140 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNr-----g~~sIavfdI 140 (275)
..++++.-|||||||-.+.- ..|.+.+|+.
T Consensus 144 -----------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 144 -----------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred -----------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 24589999999999987753 4788999997
No 89
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.19 Score=47.96 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=32.4
Q ss_pred EEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEec
Q 023927 115 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG 155 (275)
Q Consensus 115 dI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~g 155 (275)
+++|| |++-|||+|+.+ +.+.||++|..|+|+++..+|
T Consensus 176 ~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g 213 (370)
T COG5276 176 DVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTG 213 (370)
T ss_pred eEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecC
Confidence 55565 899999999654 788999999999999999886
No 90
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.20 E-value=0.38 Score=48.16 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCeEEEEECCCCCeeEEEECC-----CCCccceEEEEEeCCCC------CEEEEeec---------cCCcEEEEEeCC-C
Q 023927 27 GRHLFVYSWPDGELKQTLDLG-----NTGLIPLEIRFLHDPSK------DIGFVGCA---------LASTMVRFSKTQ-D 85 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg-----~~G~gP~~v~f~f~P~g------~~~YV~~e---------L~stV~~~~~~~-~ 85 (275)
..+|.+++-..++......++ ....|++.|+| ||+- +++||... ....|.++.++. +
T Consensus 50 ~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal--~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~ 127 (454)
T TIGR03606 50 TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLAL--HPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKST 127 (454)
T ss_pred CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEE--CCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCC
Confidence 456777665443322222221 11357888776 8874 68999851 245788887753 2
Q ss_pred CCeeEEEEE-EecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 023927 86 GSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH 132 (275)
Q Consensus 86 G~~~~~~vi-~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~ 132 (275)
..+...+++ .-.|.. .. -....|++.|||+ ||++.-..
T Consensus 128 ~~l~~~~~Il~~lP~~-~~-------H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 128 QTLEKPVDLLAGLPAG-ND-------HNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred CccccceEEEecCCCC-CC-------cCCceEEECCCCc-EEEEECCC
Confidence 345444433 222221 11 1346899999996 99987643
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.05 E-value=0.068 Score=55.91 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=27.6
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 109 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 109 ~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
++.....+.+|||||||-||- ..|+|.+|-+++
T Consensus 507 l~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDt 539 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDT 539 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEe-ccCeEEEEEecc
Confidence 346778999999999998886 489999999954
No 92
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.95 E-value=0.2 Score=46.89 Aligned_cols=56 Identities=5% Similarity=0.125 Sum_probs=38.9
Q ss_pred cCCeEEEEECCCCCeeEEEECCCC----CccceEEEEEeCCC-----CCEEEEeeccCCcEEEEEeC
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNT----GLIPLEIRFLHDPS-----KDIGFVGCALASTMVRFSKT 83 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~----G~gP~~v~f~f~P~-----g~~~YV~~eL~stV~~~~~~ 83 (275)
-+.+|.+||++++++++++.++++ ++.-..+++ +.. ..++|++-.....|+++...
T Consensus 32 ~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~V--D~~~~~~~~~~aYItD~~~~glIV~dl~ 96 (287)
T PF03022_consen 32 CPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVV--DVRDGNCDDGFAYITDSGGPGLIVYDLA 96 (287)
T ss_dssp S--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEE--ECTTTTS-SEEEEEEETTTCEEEEEETT
T ss_pred CCcEEEEEECCCCcEEEEEECChHHcccccccceEEE--EccCCCCcceEEEEeCCCcCcEEEEEcc
Confidence 468999999999999999998742 333334444 442 26999999988889888753
No 93
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=0.26 Score=45.81 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=44.6
Q ss_pred CCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCCC
Q 023927 189 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGD 268 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~ggd 268 (275)
-|+.++.+.|-|..|+.. +.+-.+...|-|-.||.+ .|++-..|..| +++.|--+|.|-
T Consensus 159 IsNgl~Wd~d~K~fY~iD---------------sln~~V~a~dyd~~tG~~-snr~~i~dlrk-----~~~~e~~~PDGm 217 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYID---------------SLNYEVDAYDYDCPTGDL-SNRKVIFDLRK-----SQPFESLEPDGM 217 (310)
T ss_pred CCccccccccCcEEEEEc---------------cCceEEeeeecCCCcccc-cCcceeEEecc-----CCCcCCCCCCcc
Confidence 499999999999999998 346677667777788875 67888888877 345555556554
Q ss_pred c
Q 023927 269 C 269 (275)
Q Consensus 269 ~ 269 (275)
|
T Consensus 218 ~ 218 (310)
T KOG4499|consen 218 T 218 (310)
T ss_pred e
Confidence 4
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.87 E-value=0.074 Score=52.48 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=48.0
Q ss_pred EeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 023927 59 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 138 (275)
Q Consensus 59 ~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavf 138 (275)
-|+++|+|+-.+ --++|.+.|....++.+....+..-.. ...+-|..|||+|+| ++|--...++.|
T Consensus 231 ~FS~nGkyLAsa-SkD~Taiiw~v~~d~~~kl~~tlvgh~------------~~V~yi~wSPDdryL-laCg~~e~~~lw 296 (519)
T KOG0293|consen 231 QFSHNGKYLASA-SKDSTAIIWIVVYDVHFKLKKTLVGHS------------QPVSYIMWSPDDRYL-LACGFDEVLSLW 296 (519)
T ss_pred EEcCCCeeEeec-cCCceEEEEEEecCcceeeeeeeeccc------------CceEEEEECCCCCeE-EecCchHheeec
Confidence 469999965333 234555555555566666555543221 345799999999999 677778889999
Q ss_pred EecCC
Q 023927 139 NIEDP 143 (275)
Q Consensus 139 dI~~~ 143 (275)
|++..
T Consensus 297 Dv~tg 301 (519)
T KOG0293|consen 297 DVDTG 301 (519)
T ss_pred cCCcc
Confidence 99553
No 95
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.85 E-value=0.33 Score=45.17 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=63.0
Q ss_pred ceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEEEE-EecCccccccccCCCCCceeEEEEcCCCCEEEEEeC
Q 023927 53 PLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW 130 (275)
Q Consensus 53 P~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~vi-~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNr 130 (275)
+-++++ +-+.|..|++--|+-+|-.+.|+ +.|.+...+++ .+-...-.+ +..|-.+.|.-+|+ |||++|
T Consensus 160 sNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e------~~~PDGm~ID~eG~-L~Va~~ 230 (310)
T KOG4499|consen 160 SNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE------SLEPDGMTIDTEGN-LYVATF 230 (310)
T ss_pred Cccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC------CCCCCcceEccCCc-EEEEEe
Confidence 444455 89999999999999999999887 56776666554 443211111 13456677777665 999999
Q ss_pred CCCcEEEEEecCCCCCeEEEEEEe
Q 023927 131 LHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 131 g~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
..++|-.+| |-++|++.++..
T Consensus 231 ng~~V~~~d---p~tGK~L~eikl 251 (310)
T KOG4499|consen 231 NGGTVQKVD---PTTGKILLEIKL 251 (310)
T ss_pred cCcEEEEEC---CCCCcEEEEEEc
Confidence 999887776 456777776654
No 96
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.055 Score=52.73 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=80.6
Q ss_pred CCcCCCccccccCCccCCeEEEEECCCC-CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCee
Q 023927 11 AFTKGFNLQHVSDGLYGRHLFVYSWPDG-ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWN 89 (275)
Q Consensus 11 ~~~~g~~~~~~~~g~~~d~I~v~d~~~~-k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~ 89 (275)
.|-.|.....++..---++|.+||...+ +.+.++++.+.+- -++. ..|+++.+|+++-. .++..|.- .
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i--s~~~--l~p~gn~Iy~gn~~-g~l~~FD~------r 277 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI--SSTG--LTPSGNFIYTGNTK-GQLAKFDL------R 277 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcc--eeee--ecCCCcEEEEeccc-chhheecc------c
Confidence 3555555555555455688999999985 7888899876322 2333 38999999999665 44444432 1
Q ss_pred EEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 90 HEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 90 ~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
..+..-.. +.|. -+.+..|+.+|.+++| +||-.+.-|++||+.. -+|+.++.+
T Consensus 278 ~~kl~g~~---~kg~-----tGsirsih~hp~~~~l-as~GLDRyvRIhD~kt---rkll~kvYv 330 (412)
T KOG3881|consen 278 GGKLLGCG---LKGI-----TGSIRSIHCHPTHPVL-ASCGLDRYVRIHDIKT---RKLLHKVYV 330 (412)
T ss_pred Cceeeccc---cCCc-----cCCcceEEEcCCCceE-EeeccceeEEEeeccc---chhhhhhhh
Confidence 11222111 2222 2678999999999977 8999999999999844 456666665
No 97
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.77 E-value=0.064 Score=51.53 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=76.5
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+.|-|++++-+|..+.+.+++.. +..+.|--|+.| +++|+++|++.--+..|.++.... ....+..+-. .+
T Consensus 224 a~gsY~q~~giy~~~~~~pl~ll--ggh~gGvThL~~--~edGn~lfsGaRk~dkIl~WDiR~----~~~pv~~L~r-hv 294 (406)
T KOG2919|consen 224 AVGSYGQRVGIYNDDGRRPLQLL--GGHGGGVTHLQW--CEDGNKLFSGARKDDKILCWDIRY----SRDPVYALER-HV 294 (406)
T ss_pred eeecccceeeeEecCCCCceeee--cccCCCeeeEEe--ccCcCeecccccCCCeEEEEeehh----ccchhhhhhh-hc
Confidence 55889999999999999888744 456778889887 999999999988888887775421 1111112111 11
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 146 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~ 146 (275)
... |.---.-+.|+|++| +|---.+.|++||.+++++.
T Consensus 295 ~~T------NQRI~FDld~~~~~L-asG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 295 GDT------NQRILFDLDPKGEIL-ASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred cCc------cceEEEecCCCCcee-eccCCCccEEEEecCCCCCc
Confidence 101 222344578999988 77777899999999876653
No 98
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.66 E-value=0.24 Score=49.51 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=48.1
Q ss_pred cceEEEEEeCCCCCEEEEeecc-CCcEEEEEeCCCCCeeEEEEEEecCcccc-ccccCCCCCceeEEEEcCCC------C
Q 023927 52 IPLEIRFLHDPSKDIGFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQ-NWILPEMPGLITDFLISLDD------R 123 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV~~eL-~stV~~~~~~~~G~~~~~~vi~i~~~~~~-g~~~~~~~~~~adI~iSpDg------r 123 (275)
.|+.|+| .|+|+ +||+ |- .+.|.++.. .++. ...+..++..... +. ...-+|+++||= +
T Consensus 31 ~Pw~maf--lPDG~-llVt-ER~~G~I~~v~~-~~~~--~~~~~~l~~v~~~~ge------~GLlglal~PdF~~~~~n~ 97 (454)
T TIGR03606 31 KPWALLW--GPDNQ-LWVT-ERATGKILRVNP-ETGE--VKVVFTLPEIVNDAQH------NGLLGLALHPDFMQEKGNP 97 (454)
T ss_pred CceEEEE--cCCCe-EEEE-EecCCEEEEEeC-CCCc--eeeeecCCceeccCCC------CceeeEEECCCccccCCCc
Confidence 6898876 89984 6655 55 588888853 2222 2223233211111 22 456899999884 7
Q ss_pred EEEEEeC---------CCCcEEEEEecC
Q 023927 124 FLYFSNW---------LHGDIRQYNIED 142 (275)
Q Consensus 124 fLYVSNr---------g~~sIavfdI~~ 142 (275)
+|||+.- .++.|+.|..+.
T Consensus 98 ~lYvsyt~~~~~~~~~~~~~I~R~~l~~ 125 (454)
T TIGR03606 98 YVYISYTYKNGDKELPNHTKIVRYTYDK 125 (454)
T ss_pred EEEEEEeccCCCCCccCCcEEEEEEecC
Confidence 9999851 257899998853
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.62 E-value=0.38 Score=46.12 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=66.2
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCC--EEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKD--IGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~--~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
+.|-..++|++||+.+++-++.+-. +.|+ -- ++-|.+... ++ ++|.-++.|..+.. |.|.....+.--.
T Consensus 57 aSGssDetI~IYDm~k~~qlg~ll~-Hags-it--aL~F~~~~S~shL-lS~sdDG~i~iw~~---~~W~~~~slK~H~- 127 (362)
T KOG0294|consen 57 ASGSSDETIHIYDMRKRKQLGILLS-HAGS-IT--ALKFYPPLSKSHL-LSGSDDGHIIIWRV---GSWELLKSLKAHK- 127 (362)
T ss_pred eccCCCCcEEEEeccchhhhcceec-cccc-eE--EEEecCCcchhhe-eeecCCCcEEEEEc---CCeEEeeeecccc-
Confidence 5577889999999999877665433 3333 11 233355442 44 45555678888764 5785554442221
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
...++|.|+|.|| |=.|--++..++.|++-.
T Consensus 128 -----------~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 128 -----------GQVTDLSIHPSGK-LALSVGGDQVLRTWNLVR 158 (362)
T ss_pred -----------cccceeEecCCCc-eEEEEcCCceeeeehhhc
Confidence 2358999999999 668888899999999744
No 100
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.37 Score=44.11 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=48.1
Q ss_pred EEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEE
Q 023927 124 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY 203 (275)
Q Consensus 124 fLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~Ly 203 (275)
.||+.-|..+.|++++ |.++++++.+.+-|..+- ..+..-+-. .++.+|..|++.|+|
T Consensus 187 ~lyANVw~t~~I~rI~---p~sGrV~~widlS~L~~~---------------~~~~~~~~n----vlNGIA~~~~~~r~~ 244 (262)
T COG3823 187 ELYANVWQTTRIARID---PDSGRVVAWIDLSGLLKE---------------LNLDKSNDN----VLNGIAHDPQQDRFL 244 (262)
T ss_pred EEEEeeeeecceEEEc---CCCCcEEEEEEccCCchh---------------cCccccccc----cccceeecCcCCeEE
Confidence 6999999999999888 466899888887554221 111111112 388899999999999
Q ss_pred EEeCCCCCccccccccc
Q 023927 204 VTNSLFSAWDCQFYPEL 220 (275)
Q Consensus 204 VANsl~~~wd~Q~yp~~ 220 (275)
++- ..||.|
T Consensus 245 iTG--------K~wp~l 253 (262)
T COG3823 245 ITG--------KLWPLL 253 (262)
T ss_pred Eec--------CcCcee
Confidence 999 666655
No 101
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.48 E-value=0.34 Score=48.81 Aligned_cols=99 Identities=22% Similarity=0.278 Sum_probs=61.9
Q ss_pred ccCCccCCeEEEEECCCCCeeEE-EECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQT-LDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~-i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
+...+.||.|-|||...++.... -+| |-.+ +...+|+||++-|+|-- -++|++..+ +|+- +. ++.
T Consensus 375 vigt~dgD~l~iyd~~~~e~kr~e~~l-----g~I~-av~vs~dGK~~vvaNdr-~el~vidid-ngnv---~~--idk- 440 (668)
T COG4946 375 VIGTNDGDKLGIYDKDGGEVKRIEKDL-----GNIE-AVKVSPDGKKVVVANDR-FELWVIDID-NGNV---RL--IDK- 440 (668)
T ss_pred EEeccCCceEEEEecCCceEEEeeCCc-----cceE-EEEEcCCCcEEEEEcCc-eEEEEEEec-CCCe---eE--ecc-
Confidence 34467789999999998764321 122 2222 34569999999888654 566666653 3322 11 111
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeC-C--CCcEEEEEec
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNW-L--HGDIRQYNIE 141 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNr-g--~~sIavfdI~ 141 (275)
+.. ...+++.+||++||+=-+-- | .-+|.+||+.
T Consensus 441 --S~~------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 441 --SEY------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred --ccc------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 112 57799999999999843332 2 3678889983
No 102
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.46 E-value=0.73 Score=46.56 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=45.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCc
Q 023927 112 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ 191 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr 191 (275)
..-++.+|+|||++-|+|- ...|.++||++ ++.+++.+..-| .=-
T Consensus 403 ~I~av~vs~dGK~~vvaNd-r~el~vididn-gnv~~idkS~~~---------------------------------lIt 447 (668)
T COG4946 403 NIEAVKVSPDGKKVVVAND-RFELWVIDIDN-GNVRLIDKSEYG---------------------------------LIT 447 (668)
T ss_pred ceEEEEEcCCCcEEEEEcC-ceEEEEEEecC-CCeeEecccccc---------------------------------eeE
Confidence 5578999999999999996 46899999944 778886654321 133
Q ss_pred eEEECCCCCEEEEE
Q 023927 192 MIQLSLDGKRLYVT 205 (275)
Q Consensus 192 ~~~LSpDGk~LyVA 205 (275)
+|+++|+++|+--|
T Consensus 448 df~~~~nsr~iAYa 461 (668)
T COG4946 448 DFDWHPNSRWIAYA 461 (668)
T ss_pred EEEEcCCceeEEEe
Confidence 79999999988655
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.40 E-value=0.52 Score=46.54 Aligned_cols=138 Identities=9% Similarity=0.089 Sum_probs=85.8
Q ss_pred ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecC
Q 023927 19 QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS 98 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~ 98 (275)
..+..|.+..+|.+||..+.+.+++++++. .--. +-.++++..+-.. --++++-++.-. ..+..++.+.+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtS--l~ls~~g~~lLss-sRDdtl~viDlR---t~eI~~~~sA~- 382 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTS--LDLSMDGLELLSS-SRDDTLKVIDLR---TKEIRQTFSAE- 382 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc---ceee--EeeccCCeEEeee-cCCCceeeeecc---cccEEEEeecc-
Confidence 344568888999999999999988888863 1222 3347888877665 555666666421 23333443332
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
.+. .+.--+...+|||++|+ ++--..++|-+|++.. .|+......-++ +
T Consensus 383 -g~k------~asDwtrvvfSpd~~Yv-aAGS~dgsv~iW~v~t---gKlE~~l~~s~s------------------~-- 431 (459)
T KOG0288|consen 383 -GFK------CASDWTRVVFSPDGSYV-AAGSADGSVYIWSVFT---GKLEKVLSLSTS------------------N-- 431 (459)
T ss_pred -ccc------cccccceeEECCCCcee-eeccCCCcEEEEEccC---ceEEEEeccCCC------------------C--
Confidence 221 01223789999999977 4455579999999843 555433332110 0
Q ss_pred ccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.+ =..++.+|.|+.|+.|.
T Consensus 432 ---~a------I~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 432 ---AA------ITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ---cc------eEEEEEcCCCchhhccc
Confidence 01 12567789999999886
No 104
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.34 E-value=0.8 Score=43.65 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=80.1
Q ss_pred cCCeEEEEECCC-CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec-----------------cCCcEEEEEeCCCCC
Q 023927 26 YGRHLFVYSWPD-GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA-----------------LASTMVRFSKTQDGS 87 (275)
Q Consensus 26 ~~d~I~v~d~~~-~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e-----------------L~stV~~~~~~~~G~ 87 (275)
....|-|||... -+.+.+++ ..|-+|-++.+ .|||+.+-|.|. +.++++.+.. .+|+
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~--s~GIGPHel~l--~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~-~sG~ 149 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFP--SHGIGPHELLL--MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA-RSGA 149 (305)
T ss_pred CcEEEEEEECcCCcEEEeEec--CCCcChhhEEE--cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec-CCCc
Confidence 346789999983 24444554 46889999987 999999999886 4556666643 3444
Q ss_pred eeEEEEE------------EecCc-------ccccc---ccC----------------------CCCCceeEEEEcCCCC
Q 023927 88 WNHEVAI------------SVKSL-------KVQNW---ILP----------------------EMPGLITDFLISLDDR 123 (275)
Q Consensus 88 ~~~~~vi------------~i~~~-------~~~g~---~~~----------------------~~~~~~adI~iSpDgr 123 (275)
+-.+..+ .+.+. .++|. ..| .|.+....|+++.||+
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~ 229 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGR 229 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCC
Confidence 3222111 11111 01110 000 2678999999999999
Q ss_pred EEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 124 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 124 fLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
++.+|+=..|.+.+||.. ++++++.+.+
T Consensus 230 ~ia~tsPrGg~~~~~d~~---tg~~~~~~~l 257 (305)
T PF07433_consen 230 LIAVTSPRGGRVAVWDAA---TGRLLGSVPL 257 (305)
T ss_pred EEEEECCCCCEEEEEECC---CCCEeecccc
Confidence 999999999999999863 4677766654
No 105
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.29 E-value=0.55 Score=49.44 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=83.8
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
...+|..||+...+-..++..+ .....-++ +.+|.|..+..+.--+=.|+++.. +.| |.+.+.. |..
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P-~p~Qfscv--avD~sGelV~AG~~d~F~IfvWS~-qTG-----qllDiLs----GHE 478 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSP-EPIQFSCV--AVDPSGELVCAGAQDSFEIFVWSV-QTG-----QLLDILS----GHE 478 (893)
T ss_pred cCCeEEeeeecccceeeeecCC-CceeeeEE--EEcCCCCEEEeeccceEEEEEEEe-ecC-----eeeehhc----CCC
Confidence 4568999999988888887764 23333444 459999988777555556666654 233 3444442 221
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
+-.+.+.+||+|..||-+.| +.+|+.|+|=+. -..+..+.+ ..
T Consensus 479 -----gPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s--~~~vEtl~i--------------------~s--------- 521 (893)
T KOG0291|consen 479 -----GPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSS--SGTVETLEI--------------------RS--------- 521 (893)
T ss_pred -----CcceeeEEccccCeEEeccc-cceEEEEEeecc--CceeeeEee--------------------cc---------
Confidence 23467889999998888877 789999999442 111222221 00
Q ss_pred cCCCCceEEECCCCCEEEEEe
Q 023927 186 LRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.--.++++|||+.|-||.
T Consensus 522 ---dvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 522 ---DVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ---ceeEEEEcCCCCeEEEEE
Confidence 133789999999999997
No 106
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.11 E-value=0.04 Score=43.00 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
..|..|.+|||+|+||||.-...+|.+|++.+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 46789999999999999999999999999843
No 107
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.39 Score=47.08 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=26.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+..+.+.+|+|||||=+..- .|+|++|+...
T Consensus 282 ~siSsl~VS~dGkf~AlGT~-dGsVai~~~~~ 312 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTM-DGSVAIYDAKS 312 (398)
T ss_pred CcceeEEEcCCCcEEEEecc-CCcEEEEEece
Confidence 47899999999999988876 99999999744
No 108
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.06 E-value=0.084 Score=34.05 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCC
Q 023927 197 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG 255 (275)
Q Consensus 197 pDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~~g 255 (275)
|||++|||+| + ...++..+|. .++.+ -.. ++.++.|.+
T Consensus 1 pd~~~lyv~~--------~-------~~~~v~~id~--~~~~~--~~~--i~vg~~P~~ 38 (42)
T TIGR02276 1 PDGTKLYVTN--------S-------GSNTVSVIDT--ATNKV--IAT--IPVGGYPFG 38 (42)
T ss_pred CCCCEEEEEe--------C-------CCCEEEEEEC--CCCeE--EEE--EECCCCCce
Confidence 7999999999 4 2456666744 66643 222 444665554
No 109
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.05 E-value=0.057 Score=42.39 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.7
Q ss_pred CCceEEECCCCCEEEEEe
Q 023927 189 GPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVAN 206 (275)
.|+.++||+||.+|+||=
T Consensus 58 fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 58 FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred ccCeEEEcCCCCEEEEEe
Confidence 499999999999999985
No 110
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.04 E-value=0.89 Score=43.31 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=63.3
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
--.....+||..++.-.|++.- . .+---.|+| +|+|. +|+.+--+++.-.|...++ .++...-.+...
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~g-h-esDINsv~f--fP~G~-afatGSDD~tcRlyDlRaD-----~~~a~ys~~~~~-- 273 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEG-H-ESDINSVRF--FPSGD-AFATGSDDATCRLYDLRAD-----QELAVYSHDSII-- 273 (343)
T ss_pred ccccceeeeeccCcceeEeecc-c-ccccceEEE--ccCCC-eeeecCCCceeEEEeecCC-----cEEeeeccCccc--
Confidence 3455678999999998888764 2 233445565 99997 7777666566555543222 122222222111
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
...+-+.+|..||.||+- ..+..+.+||.
T Consensus 274 ------~gitSv~FS~SGRlLfag-y~d~~c~vWDt 302 (343)
T KOG0286|consen 274 ------CGITSVAFSKSGRLLFAG-YDDFTCNVWDT 302 (343)
T ss_pred ------CCceeEEEcccccEEEee-ecCCceeEeec
Confidence 234789999999999876 77889999997
No 111
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.96 E-value=0.13 Score=51.30 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=37.8
Q ss_pred ceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEec---------CccccccccCCCCCceeEEEEcCCCC
Q 023927 53 PLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK---------SLKVQNWILPEMPGLITDFLISLDDR 123 (275)
Q Consensus 53 P~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~---------~~~~~g~~~~~~~~~~adI~iSpDgr 123 (275)
|+-.-++.|.|.+++||+|=+.+.|..|.... -...+.+-++- +..+.|.. +...|.-|.+|.|||
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD--P~~Pkl~gqv~lGG~~~~~~~~~v~g~~---l~GgPqMvqlS~DGk 386 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISD--PFNPKLVGQVFLGGSIRKGDHPVVKGKR---LRGGPQMVQLSLDGK 386 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SS--TTS-EEEEEEE-BTTTT-B--TTS---------S----EEE-TTSS
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCC--CCCCcEEeEEEECcEeccCCCccccccc---cCCCCCeEEEccCCe
Confidence 34444677999999999999999999998642 23334433322 11222333 336788999999999
Q ss_pred EEEEEeCC
Q 023927 124 FLYFSNWL 131 (275)
Q Consensus 124 fLYVSNrg 131 (275)
+|||+|-.
T Consensus 387 RlYvTnSL 394 (461)
T PF05694_consen 387 RLYVTNSL 394 (461)
T ss_dssp EEEEE---
T ss_pred EEEEEeec
Confidence 99999973
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.96 E-value=0.35 Score=49.00 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=86.7
Q ss_pred ccCCccCCeEEEEECCCCC-eeE-EEE-CCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeE-----EE
Q 023927 21 VSDGLYGRHLFVYSWPDGE-LKQ-TLD-LGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNH-----EV 92 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k-~~~-~i~-Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~-----~~ 92 (275)
++.|-+.-.|++||+.-.. -.+ .-. .+.+...-+.+.| +|.|..+.|+... +...++.+ +|..-. .|
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~-aqakl~DR--dG~~~~e~~KGDQ 256 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQILVVSGS-AQAKLLDR--DGFEIVEFSKGDQ 256 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCeEEEEecC-cceeEEcc--CCceeeeeeccch
Confidence 5678899999999998531 111 111 1223445555555 9999988887543 44444443 332111 12
Q ss_pred EEE-ecCccccccccCCCCCceeE---EEEcCCCCEEEEEeCCCCcEEEEEecCCC-CCeEEEEEEecceeecCCceeee
Q 023927 93 AIS-VKSLKVQNWILPEMPGLITD---FLISLDDRFLYFSNWLHGDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAV 167 (275)
Q Consensus 93 vi~-i~~~~~~g~~~~~~~~~~ad---I~iSpDgrfLYVSNrg~~sIavfdI~~~~-~~~lv~~v~~gG~~~~~~~~~v~ 167 (275)
.|. +-. ..++.|. -..+|+-|--+.+|-.+++++.|++++.. +.+++-....||.
T Consensus 257 YI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~---------- 316 (641)
T KOG0772|consen 257 YIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK---------- 316 (641)
T ss_pred hhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc----------
Confidence 121 110 1134444 45799999999999999999999997753 3334333333221
Q ss_pred cCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe--CCCCCcc
Q 023927 168 TDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN--SLFSAWD 213 (275)
Q Consensus 168 ~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN--sl~~~wd 213 (275)
+. -|.--+.+|||+++-.++ -=.+.||
T Consensus 317 ----------------Rv---~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 317 ----------------RV---PVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred ----------------cc---CceeeecCCCcchhhhcccCCceeeee
Confidence 11 277889999999844443 2234555
No 113
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.90 E-value=0.29 Score=51.14 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=60.7
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
..|||+.. |+.++-+..=++++.-..|. ++.+- .|.. ....++++||+|||| +|---.+.|-+
T Consensus 541 v~FHPNs~--Y~aTGSsD~tVRlWDv~~G~-----~VRiF----~GH~-----~~V~al~~Sp~Gr~L-aSg~ed~~I~i 603 (707)
T KOG0263|consen 541 VSFHPNSN--YVATGSSDRTVRLWDVSTGN-----SVRIF----TGHK-----GPVTALAFSPCGRYL-ASGDEDGLIKI 603 (707)
T ss_pred EEECCccc--ccccCCCCceEEEEEcCCCc-----EEEEe----cCCC-----CceEEEEEcCCCceE-eecccCCcEEE
Confidence 45699988 55555433334443323332 23332 3332 456899999999999 88888999999
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 138 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 138 fdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
||+.. ++++.+.. |. .|.=..+.+|+||.-|.|+.
T Consensus 604 WDl~~---~~~v~~l~-----------------------------~H--t~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 604 WDLAN---GSLVKQLK-----------------------------GH--TGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred EEcCC---Ccchhhhh-----------------------------cc--cCceeEEEEecCCCEEEecC
Confidence 99944 33322211 11 11134688999999888886
No 114
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.89 E-value=1.1 Score=44.39 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=52.7
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccC
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILP 107 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~ 107 (275)
.+|++++++.++............. ..|+|||+++-.+.+-+...-.|-++.+++- .-.+.. ..|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~-----P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~--~~gi--- 283 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGA-----PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----LPRLTN--GFGI--- 283 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCC-----ccCCCCCCEEEEEECCCCCccEEEEcCCCCc----ceeccc--CCcc---
Confidence 5788888888755443333222222 3359999988888777666666655533322 111111 1121
Q ss_pred CCCCceeEEEEcCCCCEEE-EEeCC-CCcEEEEEe
Q 023927 108 EMPGLITDFLISLDDRFLY-FSNWL-HGDIRQYNI 140 (275)
Q Consensus 108 ~~~~~~adI~iSpDgrfLY-VSNrg-~~sIavfdI 140 (275)
-..=.+||||++|| +|.|+ +=.|.+++.
T Consensus 284 -----~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 284 -----NTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred -----ccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 12445999999875 56663 445555554
No 115
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.88 E-value=0.75 Score=43.09 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=66.9
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+..-|.+.|.+|...+++-+.+|.-. ++.. - ++-..|+++.+-+.| ..=++++.-..++=....++....
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiqh~-dsqV-N--rLeiTpdk~~LAaa~---~qhvRlyD~~S~np~Pv~t~e~h~--- 83 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQHP-DSQV-N--RLEITPDKKDLAAAG---NQHVRLYDLNSNNPNPVATFEGHT--- 83 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEecC-ccce-e--eEEEcCCcchhhhcc---CCeeEEEEccCCCCCceeEEeccC---
Confidence 33349999999999999988888763 3332 2 233489998665552 233344322222222222222221
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeE
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 148 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~l 148 (275)
+..+.+-+.-|||++|-+.- ++++.+||+..+...++
T Consensus 84 ---------kNVtaVgF~~dgrWMyTgse-Dgt~kIWdlR~~~~qR~ 120 (311)
T KOG0315|consen 84 ---------KNVTAVGFQCDGRWMYTGSE-DGTVKIWDLRSLSCQRN 120 (311)
T ss_pred ---------CceEEEEEeecCeEEEecCC-CceEEEEeccCcccchh
Confidence 45588999999999997654 78999999976543333
No 116
>PTZ00421 coronin; Provisional
Probab=94.74 E-value=0.71 Score=46.46 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=63.2
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec---cCCcEEEEEeCCCCCeeEEEEEEecC
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA---LASTMVRFSKTQDGSWNHEVAISVKS 98 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e---L~stV~~~~~~~~G~~~~~~vi~i~~ 98 (275)
+.+-....|.+||+.+++.+.++.. .. ++...+.+++|++..++.++- -+.+|.++.... .. .......+..
T Consensus 184 atgs~Dg~IrIwD~rsg~~v~tl~~-H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~-~~-~p~~~~~~d~ 258 (493)
T PTZ00421 184 CTTSKDKKLNIIDPRDGTIVSSVEA-HA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK-MA-SPYSTVDLDQ 258 (493)
T ss_pred EEecCCCEEEEEECCCCcEEEEEec-CC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC-CC-CceeEeccCC
Confidence 4455677899999999888776653 22 233234556888876654431 124555554321 11 0111111110
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.....-...++|+++||++..+.+.|.+|++.+
T Consensus 259 -----------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 259 -----------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred -----------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 012344568999999999999999999999965
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.73 E-value=2.5 Score=36.45 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=64.2
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEe-cCccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISV-KSLKVQN 103 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i-~~~~~~g 103 (275)
.....|+.||.++++.+-+.+++.....+. ..++..+||.++- +.|..+. ..+|+...+..... ++...
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~------~~~~~~v~v~~~~-~~l~~~d-~~tG~~~W~~~~~~~~~~~~-- 112 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGPISGAP------VVDGGRVYVGTSD-GSLYALD-AKTGKVLWSIYLTSSPPAGV-- 112 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSCGGSGE------EEETTEEEEEETT-SEEEEEE-TTTSCEEEEEEE-SSCTCST--
T ss_pred cCCCEEEEEECCCCCEEEEeecccccccee------eecccccccccce-eeeEecc-cCCcceeeeecccccccccc--
Confidence 478899999999999988888854323331 2456777888743 3666665 35665433321111 11111
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
...+....++..||+++. .+.|.++|+. +++++-+...
T Consensus 113 ---------~~~~~~~~~~~~~~~~~~-~g~l~~~d~~---tG~~~w~~~~ 150 (238)
T PF13360_consen 113 ---------RSSSSPAVDGDRLYVGTS-SGKLVALDPK---TGKLLWKYPV 150 (238)
T ss_dssp ---------B--SEEEEETTEEEEEET-CSEEEEEETT---TTEEEEEEES
T ss_pred ---------ccccCceEecCEEEEEec-cCcEEEEecC---CCcEEEEeec
Confidence 122223333888999988 7789888863 4677655554
No 118
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.70 E-value=0.28 Score=45.95 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=56.8
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEE-EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIR-FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~-f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
++..|.+||.++-+++...+++- .|. -..||+. ..||.+...--+.+|.|+. | ..+-... .|.
T Consensus 203 ~gssV~Fwdaksf~~lKs~k~P~------nV~SASL~P~k-~~fVaGged~~~~kfDy~T-g----eEi~~~n----kgh 266 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLKSYKMPC------NVESASLHPKK-EFFVAGGEDFKVYKFDYNT-G----EEIGSYN----KGH 266 (334)
T ss_pred cCceeEEeccccccceeeccCcc------ccccccccCCC-ceEEecCcceEEEEEeccC-C----ceeeecc----cCC
Confidence 44445555554444444444431 111 1238888 6788877777777776642 2 1111111 221
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
..-.-.+.+||||. ||+|---+++|+.|.+..
T Consensus 267 -----~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 267 -----FGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -----CCceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence 12345788999999 999999999999999844
No 119
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=94.70 E-value=0.55 Score=46.46 Aligned_cols=179 Identities=21% Similarity=0.348 Sum_probs=112.3
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCC-CCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~-g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
++-|-.+..+.||...+...++++. |. .-+-....|||. ....-++|..+++|-.+..+.. .+-.
T Consensus 190 laT~swsG~~kvW~~~~~~~~~~l~-gH---~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e----------~~l~ 255 (459)
T KOG0272|consen 190 LATGSWSGLVKVWSVPQCNLLQTLR-GH---TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE----------TPLQ 255 (459)
T ss_pred EEEeecCCceeEeecCCcceeEEEe-cc---ccceeeEEEccCCCccceeeeccCCceeeeccCCC----------cchh
Confidence 3557788889999999887777654 22 222223456999 5778889999998888766421 1111
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
.++|. +...+.++++|+||||--++..+ +=+.||+.... .-|.. .|.
T Consensus 256 ~l~gH-----~~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk~-ElL~Q----EGH---------------------- 302 (459)
T KOG0272|consen 256 DLEGH-----LARVSRVAFHPSGKFLGTASFDS-TWRLWDLETKS-ELLLQ----EGH---------------------- 302 (459)
T ss_pred hhhcc-----hhhheeeeecCCCceeeeccccc-chhhcccccch-hhHhh----ccc----------------------
Confidence 22332 14568999999999998888744 67889985521 11211 010
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEeCC---CCCcccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCC
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTNSL---FSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGP 256 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVANsl---~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~~g~ 256 (275)
-+ +-.++++-|||. |.++..| =.-||-. + |..|+-+ + | -+.+=|.|+|. |+|
T Consensus 303 -s~------~v~~iaf~~DGS-L~~tGGlD~~~RvWDlR------t-gr~im~L--~---g--H~k~I~~V~fs--PNG- 357 (459)
T KOG0272|consen 303 -SK------GVFSIAFQPDGS-LAATGGLDSLGRVWDLR------T-GRCIMFL--A---G--HIKEILSVAFS--PNG- 357 (459)
T ss_pred -cc------ccceeEecCCCc-eeeccCccchhheeecc------c-CcEEEEe--c---c--cccceeeEeEC--CCc-
Confidence 01 244789999997 5565432 2335555 2 3333333 1 1 24456778884 678
Q ss_pred cceeeeecCCCCcCcccc
Q 023927 257 ALAHEMRYPGGDCTSDIW 274 (275)
Q Consensus 257 ~~~h~~r~~ggd~~sd~~ 274 (275)
-+|-=.++|||--||
T Consensus 358 ---y~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 358 ---YHLATGSSDNTCKVW 372 (459)
T ss_pred ---eEEeecCCCCcEEEe
Confidence 466678999999888
No 120
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.53 Score=45.05 Aligned_cols=60 Identities=17% Similarity=0.364 Sum_probs=47.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCce
Q 023927 113 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 192 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~ 192 (275)
..+-.++-.|+++||+.| ++-.-++|+++|.+|.|.++...- .|. -.+
T Consensus 129 gyaygv~vsGn~aYVadl-ddgfLivdvsdpssP~lagrya~~--------------------------~~d-----~~~ 176 (370)
T COG5276 129 GYAYGVYVSGNYAYVADL-DDGFLIVDVSDPSSPQLAGRYALP--------------------------GGD-----THD 176 (370)
T ss_pred ceEEEEEecCCEEEEeec-cCcEEEEECCCCCCceeeeeeccC--------------------------CCC-----cee
Confidence 345567888999999999 778899999999999998876541 122 357
Q ss_pred EEECCCCCEEEEEe
Q 023927 193 IQLSLDGKRLYVTN 206 (275)
Q Consensus 193 ~~LSpDGk~LyVAN 206 (275)
.++ .|+|-|||.
T Consensus 177 v~I--SGn~AYvA~ 188 (370)
T COG5276 177 VAI--SGNYAYVAW 188 (370)
T ss_pred EEE--ecCeEEEEE
Confidence 888 589999996
No 121
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.58 E-value=1.2 Score=41.61 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=93.7
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..+-....|.+||++++|.+.++. ..+..--.++| +.+.. +-+++-++++|-+|.-.. -..+..|++.-..
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~f--NeesS-Vv~SgsfD~s~r~wDCRS-~s~ePiQildea~--- 145 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFR--GHLAQVNTVRF--NEESS-VVASGSFDSSVRLWDCRS-RSFEPIQILDEAK--- 145 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecc--cccceeeEEEe--cCcce-EEEeccccceeEEEEccc-CCCCccchhhhhc---
Confidence 444456779999999999887553 23444555666 55555 556778888888875321 2455555543221
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccc
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV 181 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~ 181 (275)
. ....|.++ ...-|+---+++++.|||.. +++....
T Consensus 146 D---------~V~Si~v~---~heIvaGS~DGtvRtydiR~---G~l~sDy----------------------------- 181 (307)
T KOG0316|consen 146 D---------GVSSIDVA---EHEIVAGSVDGTVRTYDIRK---GTLSSDY----------------------------- 181 (307)
T ss_pred C---------ceeEEEec---ccEEEeeccCCcEEEEEeec---ceeehhh-----------------------------
Confidence 1 12344443 24557777788999999954 3441110
Q ss_pred cCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCee------eccceeEe
Q 023927 182 QGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA------INPNFFVD 248 (275)
Q Consensus 182 ~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~------~~~~f~vd 248 (275)
-|.. -.-+.+|+||..+++.. - ++++-.+ |.+||+|- .|..|-+|
T Consensus 182 ~g~p----it~vs~s~d~nc~La~~--------l--------~stlrLl--Dk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 182 FGHP----ITSVSFSKDGNCSLASS--------L--------DSTLRLL--DKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cCCc----ceeEEecCCCCEEEEee--------c--------cceeeec--ccchhHHHHHhcccccceeeee
Confidence 0222 45689999999999986 2 4455556 55899882 56666665
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.56 E-value=0.077 Score=53.55 Aligned_cols=167 Identities=16% Similarity=0.247 Sum_probs=102.8
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+.| +...|.|||+.+-.. +|+..-.-++|-..+++.+||.+.+|..|. +++|.++.-. .+..+. .+
T Consensus 482 vGG-eastlsiWDLAapTp--rikaeltssapaCyALa~spDakvcFsccs-dGnI~vwDLh------nq~~Vr----qf 547 (705)
T KOG0639|consen 482 VGG-EASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDAKVCFSCCS-DGNIAVWDLH------NQTLVR----QF 547 (705)
T ss_pred ecc-ccceeeeeeccCCCc--chhhhcCCcchhhhhhhcCCccceeeeecc-CCcEEEEEcc------cceeee----cc
Confidence 444 589999999997644 233332345787778888999999998865 3666666431 111222 22
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC---eEEEEEEecceeecCCceeee-cC--------
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP---VLTGQIWVGGLFRKGSPVVAV-TD-------- 169 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~---~lv~~v~~gG~~~~~~~~~v~-~~-------- 169 (275)
.|. ...++-|.||+||-.|+ +--.+|+|+.||.....++ .+..+|..-|..|.+-||-|= |+
T Consensus 548 qGh-----tDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 548 QGH-----TDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred cCC-----CCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 332 13557899999999997 3445899999998653333 235567777777776665442 21
Q ss_pred -CCCCCCCCCccccCcccCCCCceEEECCCCCEEEEE--eCCCCCcccc
Q 023927 170 -DGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWDCQ 215 (275)
Q Consensus 170 -~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVA--Nsl~~~wd~Q 215 (275)
++-++|.. .+ +-.-=.+.+++.|||..-+ ..|+++|---
T Consensus 622 skp~kyqlh------lh-eScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 622 SKPEKYQLH------LH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred CCccceeec------cc-ccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 22222221 11 0011235568899987765 3588899765
No 123
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.47 E-value=0.23 Score=47.67 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=64.5
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..|.....|.++|+.+-.....+++-.+-..-|.+.| ||.|.++-|+.+- .+.+++.-+ +.+--++..|...
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSf--HPsGefllvgTdH--p~~rlYdv~----T~QcfvsanPd~q 259 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISF--HPSGEFLLVGTDH--PTLRLYDVN----TYQCFVSANPDDQ 259 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEee--cCCCceEEEecCC--CceeEEecc----ceeEeeecCcccc
Confidence 4466777888888886422222222222334566665 9999999998764 334443211 1222333334322
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
- -...+.++-|+.|+ |||+---+|.|..||
T Consensus 260 h-------t~ai~~V~Ys~t~~-lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 260 H-------TGAITQVRYSSTGS-LYVTASKDGAIKLWD 289 (430)
T ss_pred c-------ccceeEEEecCCcc-EEEEeccCCcEEeec
Confidence 1 14678999999999 999999999999998
No 124
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=94.44 E-value=0.082 Score=32.41 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQY 138 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavf 138 (275)
..|..|.++++|+ |||+.++...|.+|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 3689999996666 99999999999887
No 125
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.39 E-value=0.26 Score=47.65 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=91.7
Q ss_pred cCCccCC-eEEEEECCCCCeeEEEECCCCCccce-EEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 22 SDGLYGR-HLFVYSWPDGELKQTLDLGNTGLIPL-EIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 22 ~~g~~~d-~I~v~d~~~~k~~~~i~Lg~~G~gP~-~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
..+.|.+ .|.+|++..-.....|+-|+ .++ .++ .+|+|+++-...|+...|+|+.-. .++..-++-.
T Consensus 64 lC~~yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~--WSPdgrhiL~tseF~lriTVWSL~------t~~~~~~~~p 132 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSIS--WSPDGRHILLTSEFDLRITVWSLN------TQKGYLLPHP 132 (447)
T ss_pred eeeeeccceEEEEEeecceeEEEeccCC---Ccceeee--ECCCcceEeeeecceeEEEEEEec------cceeEEeccc
Confidence 4455666 89999998777766666554 344 334 499999999999999999998742 2233333311
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCC--CcEEE-----------EEecCCCCCeEEEEEEecceeecCCceee
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLH--GDIRQ-----------YNIEDPKNPVLTGQIWVGGLFRKGSPVVA 166 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~--~sIav-----------fdI~~~~~~~lv~~v~~gG~~~~~~~~~v 166 (275)
+ .+ .-.+.++|||||.=+..|.+ +-+.. |+++. .- .+|=.++.|+.+-+
T Consensus 133 K-~~---------~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT---~D-----ltgieWsPdg~~la 194 (447)
T KOG4497|consen 133 K-TN---------VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT---ID-----LTGIEWSPDGNWLA 194 (447)
T ss_pred c-cC---------ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc---cc-----ccCceECCCCcEEE
Confidence 1 11 14677999999998888863 22221 22211 11 23334556666666
Q ss_pred ecCCCCCCCCCCccc-cCcccCCCCceEEECCCCCEEEEEe
Q 023927 167 VTDDGQPYQSDVPEV-QGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 167 ~~~~~~~~~~~~~~~-~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+=|..|++..++-.. .| =-..+.||.+++|-|..
T Consensus 195 Vwd~~Leykv~aYe~~lG------~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 195 VWDNVLEYKVYAYERGLG------LKFVEWSPCNQFLAVGS 229 (447)
T ss_pred Eecchhhheeeeeeeccc------eeEEEeccccceEEeec
Confidence 655566555332111 22 33678888888888875
No 126
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=93.96 E-value=5.8 Score=37.59 Aligned_cols=101 Identities=12% Similarity=0.180 Sum_probs=63.0
Q ss_pred CccCCeEEEEECCC-CCeeEEEECCC-CCccceEEEEEeCCCCCEEEEeec-cCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 24 GLYGRHLFVYSWPD-GELKQTLDLGN-TGLIPLEIRFLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 24 g~~~d~I~v~d~~~-~k~~~~i~Lg~-~G~gP~~v~f~f~P~g~~~YV~~e-L~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+-....|.+|+... +...-...|.. .--.-|.+++ +|.|+ |+.++ +++++..+.+ .++.|+-..++.=..
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw--sp~g~--~La~aSFD~t~~Iw~k-~~~efecv~~lEGHE-- 105 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW--SPHGR--YLASASFDATVVIWKK-EDGEFECVATLEGHE-- 105 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeee--cCCCc--EEEEeeccceEEEeec-CCCceeEEeeeeccc--
Confidence 34566788888874 33332222311 1235666655 99999 44444 6777777765 567786544433221
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+..--++.|++|+|| ++|-.+-+|.+|.++.
T Consensus 106 ----------nEVK~Vaws~sG~~L-ATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 106 ----------NEVKCVAWSASGNYL-ATCSRDKSVWIWEIDE 136 (312)
T ss_pred ----------cceeEEEEcCCCCEE-EEeeCCCeEEEEEecC
Confidence 334567899999999 4555578999999964
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=93.83 E-value=1.3 Score=45.86 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=91.0
Q ss_pred ccCCeEEEEECCCCCeeE-EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCC--CeeE-------E-EE
Q 023927 25 LYGRHLFVYSWPDGELKQ-TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDG--SWNH-------E-VA 93 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~-~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G--~~~~-------~-~v 93 (275)
..++++++||++..+++- ..-+|+.++.+- + +|+|..+-+||.+.-++.|.++....++ .++. . ..
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS-~--cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKS-E--CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred cCCceeeeeeeccceeecceeecccccccch-h--hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 467899999999988766 356777666444 2 3599999999999999999888754433 1111 0 01
Q ss_pred EEec--Cc--cccccccCCCCCce---eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceee
Q 023927 94 ISVK--SL--KVQNWILPEMPGLI---TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVA 166 (275)
Q Consensus 94 i~i~--~~--~~~g~~~~~~~~~~---adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v 166 (275)
...+ |. ....+..+ .+.. -..++..|.-.|--+...++.|.||||..+...-. ++
T Consensus 196 ~ptpskp~~kr~~k~kA~--s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r------~e---------- 257 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAA--SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR------QE---------- 257 (720)
T ss_pred CCCCCchhhccccccccc--cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc------cC----------
Confidence 0011 10 11122111 1122 34788999998866666699999999965422111 00
Q ss_pred ecCCCCCCCCCC---ccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 167 VTDDGQPYQSDV---PEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 167 ~~~~~~~~~~~~---~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
++....++ ..-.|.. +|.++..|.|||+.+
T Consensus 258 ----p~~~~~~~t~skrs~G~~------nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 258 ----PRGSDKYPTHSKRSVGQV------NLILDSSGTYLFASC 290 (720)
T ss_pred ----CCcccCccCcccceeeeE------EEEecCCCCeEEEEe
Confidence 11111111 1122333 799999999999999
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.75 E-value=0.67 Score=44.66 Aligned_cols=83 Identities=23% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEE
Q 023927 38 GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFL 117 (275)
Q Consensus 38 ~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~ 117 (275)
.++..+++.+. ... +-|++.|.++-|+|.. +.|..+..+ ++. +..+. .+.. --.+-+.
T Consensus 15 Eel~~tld~~~----a~~--~~Fs~~G~~lAvGc~n-G~vvI~D~~---T~~---iar~l----saH~-----~pi~sl~ 72 (405)
T KOG1273|consen 15 EELTHTLDNPL----AEC--CQFSRWGDYLAVGCAN-GRVVIYDFD---TFR---IARML----SAHV-----RPITSLC 72 (405)
T ss_pred HhhceeccCCc----cce--EEeccCcceeeeeccC-CcEEEEEcc---ccc---hhhhh----hccc-----cceeEEE
Confidence 35555555532 333 4459999999999987 455555432 121 11111 1111 1246789
Q ss_pred EcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 118 ISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 118 iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
-|+|||+|..|.| +++|+.||+.++
T Consensus 73 WS~dgr~LltsS~-D~si~lwDl~~g 97 (405)
T KOG1273|consen 73 WSRDGRKLLTSSR-DWSIKLWDLLKG 97 (405)
T ss_pred ecCCCCEeeeecC-CceeEEEeccCC
Confidence 9999999988888 899999999764
No 129
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.75 E-value=2.4 Score=39.10 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=69.0
Q ss_pred CCeEEEEECCCC-C-----eeEEEECCCC---CccceEEEEEeCCCCCEEEEeeccCCc-EEEEEeCC-CCCeeEEEEEE
Q 023927 27 GRHLFVYSWPDG-E-----LKQTLDLGNT---GLIPLEIRFLHDPSKDIGFVGCALAST-MVRFSKTQ-DGSWNHEVAIS 95 (275)
Q Consensus 27 ~d~I~v~d~~~~-k-----~~~~i~Lg~~---G~gP~~v~f~f~P~g~~~YV~~eL~st-V~~~~~~~-~G~~~~~~vi~ 95 (275)
.++|.+++++.. + ..+.+.|+.. ..|.=++++ +|..+++||++|-... |..+.-.. ...+.......
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~--D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAY--DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEE--ETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEE--cCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 467888887443 1 2345566522 244556655 9999999999997553 22222111 11111111111
Q ss_pred ecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCC
Q 023927 96 VKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQ 175 (275)
Q Consensus 96 i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~ 175 (275)
+... .+. -.-++++.++|.-..||+=.--...|..+|. +++.++..++-..+. .|..
T Consensus 163 ~~~~---~~~----~~d~S~l~~~p~t~~lliLS~es~~l~~~d~----~G~~~~~~~L~~g~~-----------gl~~- 219 (248)
T PF06977_consen 163 LDDD---KLF----VRDLSGLSYDPRTGHLLILSDESRLLLELDR----QGRVVSSLSLDRGFH-----------GLSK- 219 (248)
T ss_dssp HH-H---T------SS---EEEEETTTTEEEEEETTTTEEEEE-T----T--EEEEEE-STTGG-----------G-SS-
T ss_pred cccc---cce----eccccceEEcCCCCeEEEEECCCCeEEEECC----CCCEEEEEEeCCccc-----------Cccc-
Confidence 1111 111 1357999999999899988777788877773 355655555421000 0000
Q ss_pred CCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 176 SDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 176 ~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.-.+ |-.++++++| .||+.|
T Consensus 220 ------~~~Q----pEGIa~d~~G-~LYIvs 239 (248)
T PF06977_consen 220 ------DIPQ----PEGIAFDPDG-NLYIVS 239 (248)
T ss_dssp ---------S----EEEEEE-TT---EEEEE
T ss_pred ------ccCC----ccEEEECCCC-CEEEEc
Confidence 0112 8889999999 699999
No 130
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=93.63 E-value=2.8 Score=40.73 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=86.5
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+..+.+.+.+.+-.++++|.+..+. | .-+---|.+| .++|.+.- ++--+++|-+++-.....+ ++...++.+
T Consensus 321 iLS~sfD~tvRiHGlKSGK~LKEfr-G-HsSyvn~a~f--t~dG~~ii-saSsDgtvkvW~~KtteC~---~Tfk~~~~d 392 (508)
T KOG0275|consen 321 ILSASFDQTVRIHGLKSGKCLKEFR-G-HSSYVNEATF--TDDGHHII-SASSDGTVKVWHGKTTECL---STFKPLGTD 392 (508)
T ss_pred hhcccccceEEEeccccchhHHHhc-C-ccccccceEE--cCCCCeEE-EecCCccEEEecCcchhhh---hhccCCCCc
Confidence 4445577888888888888765443 1 2223335555 99999753 4455677777653211111 111111111
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcc
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE 180 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~ 180 (275)
+. .-+-|.+-.+-....|+|| .|+|.+..+ .+..+...+.
T Consensus 393 ~~---------vnsv~~~PKnpeh~iVCNr-sntv~imn~----qGQvVrsfsS-------------------------- 432 (508)
T KOG0275|consen 393 YP---------VNSVILLPKNPEHFIVCNR-SNTVYIMNM----QGQVVRSFSS-------------------------- 432 (508)
T ss_pred cc---------ceeEEEcCCCCceEEEEcC-CCeEEEEec----cceEEeeecc--------------------------
Confidence 11 1123333344455667777 678877776 2455554444
Q ss_pred ccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCee
Q 023927 181 VQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 240 (275)
Q Consensus 181 ~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~ 240 (275)
|++-.|-=-+-+|||-|.|+|+.- + ...++-+.+ .+|+|+
T Consensus 433 --GkREgGdFi~~~lSpkGewiYcig--------E--------D~vlYCF~~--~sG~LE 472 (508)
T KOG0275|consen 433 --GKREGGDFINAILSPKGEWIYCIG--------E--------DGVLYCFSV--LSGKLE 472 (508)
T ss_pred --CCccCCceEEEEecCCCcEEEEEc--------c--------CcEEEEEEe--ecCcee
Confidence 333222234568999999999998 3 236777766 789884
No 131
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.57 E-value=0.79 Score=49.42 Aligned_cols=154 Identities=12% Similarity=0.161 Sum_probs=87.0
Q ss_pred CcCCCccccc----cCCccCCeEEEEECCCCCeeEEEECC--CCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC
Q 023927 12 FTKGFNLQHV----SDGLYGRHLFVYSWPDGELKQTLDLG--NTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD 85 (275)
Q Consensus 12 ~~~g~~~~~~----~~g~~~d~I~v~d~~~~k~~~~i~Lg--~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~ 85 (275)
+.+|+.-+.. +.--...+|.||+..+=.+..+|.=+ .-+..++..|+-.+|||+|+=+.++..+......--+.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 4456555553 22224567999997663333333321 22446788888889999999999998765544443333
Q ss_pred CCeeEEE----------EEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCC-CCcEEEEEecCCCCCeEEE-EEE
Q 023927 86 GSWNHEV----------AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTG-QIW 153 (275)
Q Consensus 86 G~~~~~~----------vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg-~~sIavfdI~~~~~~~lv~-~v~ 153 (275)
|.|+-.+ ++...|+=++.. +. ..-.-.++-.|.-++.-+ +.+|++|-..-+ +|-++. ++.
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~------~~-ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf 324 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERN------NK-NGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLF 324 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccc------cc-cCCccCCCcceEEEEEecCCccEEEEecCCC-Cchhhhhhhh
Confidence 5676433 333334333321 00 011111222333344444 589999998443 455532 221
Q ss_pred ecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 154 VGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 154 ~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
++. =-+|+.||||.-|||+.
T Consensus 325 -----------------------------~~S----I~DmsWspdG~~LfacS 344 (942)
T KOG0973|consen 325 -----------------------------NKS----IVDMSWSPDGFSLFACS 344 (942)
T ss_pred -----------------------------cCc----eeeeeEcCCCCeEEEEe
Confidence 122 45899999999999998
No 132
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=93.54 E-value=0.37 Score=47.09 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.5
Q ss_pred CCceEEECCCCCEEEEEe
Q 023927 189 GPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVAN 206 (275)
.|+.+||||||.++++|-
T Consensus 220 F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 220 FPNGLALSPDGSFVLVAE 237 (376)
T ss_pred ccccccCCCCCCEEEEEe
Confidence 499999999999999984
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.49 E-value=0.96 Score=45.14 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=69.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-CCC---eeEEEEEEecCccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-DGS---WNHEVAISVKSLKV 101 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-~G~---~~~~~vi~i~~~~~ 101 (275)
..+.+.+||+..+.++.++..+. .+-. ++.+|.++++|+++|- +.|+.+.+.. .|. .. .+........+
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp~---si~a--v~lDpae~~~yiGt~~-G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~ 268 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFPS---SIKA--VALDPAERVVYIGTEE-GKIFQNLLFKLSGQSAGVN-QKGRHEENTQI 268 (476)
T ss_pred CCceEEEEEeccceeeEEEecCC---ccee--EEEcccccEEEecCCc-ceEEeeehhcCCccccccc-cccccccccee
Confidence 35789999999999998887753 3333 4569999999999997 7777775421 110 00 11111111111
Q ss_pred ---cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 102 ---QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ---~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.|.. =+...+-+.||.||.. -+|---+|.|.+|||..
T Consensus 269 ~~~~Gh~---~~~~ITcLais~Dgtl-LlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 269 NVLVGHE---NESAITCLAISTDGTL-LLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eeecccc---CCcceeEEEEecCccE-EEeeCCCCCEEEEecch
Confidence 1111 0136788999999995 48888899999999955
No 134
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.44 E-value=3.5 Score=40.82 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCccccccCCccCCeEEEEECCCCCeeE-----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCee
Q 023927 15 GFNLQHVSDGLYGRHLFVYSWPDGELKQ-----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWN 89 (275)
Q Consensus 15 g~~~~~~~~g~~~d~I~v~d~~~~k~~~-----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~ 89 (275)
.||=.-++.|....+|.||+...+.+.. ...| .|..=|--..++||...-+..+..-+++|..+.- +.|
T Consensus 91 PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L--~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv-~tg--- 164 (472)
T KOG0303|consen 91 PFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL--YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV-GTG--- 164 (472)
T ss_pred ccCCceeecCCCCceEEEEECCCcccccCcccceEEE--eecceeEEEEeecccchhhHhhccCCceEEEEec-cCC---
Confidence 3443445668888999999998774432 2223 1222232225679998888888777777777754 222
Q ss_pred EEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEE
Q 023927 90 HEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG 150 (275)
Q Consensus 90 ~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~ 150 (275)
+..+++. .|.....+.++.||..|-.+|+ +-.|++||. .+.+++.
T Consensus 165 -eali~l~-----------hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dp---r~~~~v~ 209 (472)
T KOG0303|consen 165 -EALITLD-----------HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDP---RRGTVVS 209 (472)
T ss_pred -ceeeecC-----------CCCeEEEEEeccCCceeeeecc-cceeEEEcC---CCCcEee
Confidence 3334433 2357789999999999988888 668999985 4566643
No 135
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.21 E-value=5.4 Score=38.43 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=47.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
+..|-+.|+.+|-.|=-+.-..-=|++|+..+ ++++.+.. | |-. ...=
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~---g~~l~E~R------R----------------------G~d-~A~i 229 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTED---GTLLQELR------R----------------------GVD-RADI 229 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCC---CcEeeeee------c----------------------CCc-hheE
Confidence 44566778888886644433444578888644 44443332 1 111 0013
Q ss_pred ceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEee
Q 023927 191 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 233 (275)
Q Consensus 191 r~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d 233 (275)
..|++|||+.+|-|+. . +...+||.+...
T Consensus 230 y~iaFSp~~s~LavsS--------d------KgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSS--------D------KGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEc--------C------CCeEEEEEeecC
Confidence 4689999999999997 2 346788876543
No 136
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=2.2 Score=40.80 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=52.4
Q ss_pred CCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccc
Q 023927 23 DGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 23 ~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~ 102 (275)
+-+-|.-.+++|.+.++..+++.-.+ +--.++ +=+|||||+++|.. |.+- +..-...-++... ..+.
T Consensus 86 ARrPGtf~~vfD~~~~~~pv~~~s~~-~RHfyG-HGvfs~dG~~LYAT-Endf---------d~~rGViGvYd~r-~~fq 152 (366)
T COG3490 86 ARRPGTFAMVFDPNGAQEPVTLVSQE-GRHFYG-HGVFSPDGRLLYAT-ENDF---------DPNRGVIGVYDAR-EGFQ 152 (366)
T ss_pred EecCCceEEEECCCCCcCcEEEeccc-Cceeec-ccccCCCCcEEEee-cCCC---------CCCCceEEEEecc-cccc
Confidence 34566677888888887776654322 211111 12459999999987 3210 0000011111111 1111
Q ss_pred --ccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 023927 103 --NWILPEMPGLITDFLISLDDRFLYFSNWL 131 (275)
Q Consensus 103 --g~~~~~~~~~~adI~iSpDgrfLYVSNrg 131 (275)
| .++.-+-.|-++.+.+|||.|-|+|-|
T Consensus 153 rvg-E~~t~GiGpHev~lm~DGrtlvvanGG 182 (366)
T COG3490 153 RVG-EFSTHGIGPHEVTLMADGRTLVVANGG 182 (366)
T ss_pred eec-ccccCCcCcceeEEecCCcEEEEeCCc
Confidence 1 112233467899999999999999984
No 137
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.11 E-value=2.5 Score=39.77 Aligned_cols=94 Identities=7% Similarity=0.067 Sum_probs=62.7
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
-+...|..||..+++.+|++.+.. .+-.+- .|++|+++ .-+-+++|..+.-. .+...+...+|
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s---~VtSlE--vs~dG~il--Tia~gssV~Fwdak---sf~~lKs~k~P------- 224 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNS---PVTSLE--VSQDGRIL--TIAYGSSVKFWDAK---SFGLLKSYKMP------- 224 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCC---CCccee--eccCCCEE--EEecCceeEEeccc---cccceeeccCc-------
Confidence 477889999999999999998864 222222 39999954 44566666655421 34444443333
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.....-.|+|+- -.||+--....+..||-..
T Consensus 225 ------~nV~SASL~P~k-~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 225 ------CNVESASLHPKK-EFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred ------cccccccccCCC-ceEEecCcceEEEEEeccC
Confidence 444455689988 6888877777888888743
No 138
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.09 E-value=0.76 Score=45.23 Aligned_cols=107 Identities=10% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCccccccCCccCCeEEEEECCCCC-eeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEE
Q 023927 15 GFNLQHVSDGLYGRHLFVYSWPDGE-LKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVA 93 (275)
Q Consensus 15 g~~~~~~~~g~~~d~I~v~d~~~~k-~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~v 93 (275)
+-++|.++.|-.+-.+.+|+-...| .+. .+...-..-.|+.| +||++++- +.-++.+|-.+.- .+|++
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~--rmtgHq~lVn~V~f--SPd~r~IA-SaSFDkSVkLW~g-~tGk~----- 401 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPIT--RMTGHQALVNHVSF--SPDGRYIA-SASFDKSVKLWDG-RTGKF----- 401 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchh--hhhchhhheeeEEE--CCCccEEE-EeecccceeeeeC-CCcch-----
Confidence 3445777887777888888765443 322 12122334556655 99999432 3335555554432 33433
Q ss_pred EEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 94 ISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 94 i~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+.. +.|.- +..+.|+.|.|-| |.||+--+-++-+|+|..
T Consensus 402 las----fRGHv-----~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 402 LAS----FRGHV-----AAVYQVAWSADSR-LLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhh----hhhcc-----ceeEEEEeccCcc-EEEEcCCCceEEEEEeee
Confidence 221 12221 3458999999999 669999999999999954
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.96 E-value=0.74 Score=49.22 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=64.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCC-----CCccceEEEEEeCCC-CCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGN-----TGLIPLEIRFLHDPS-KDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~-----~G~gP~~v~f~f~P~-g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
-...|.+||++.+.+..+++.-. .-+-++ .+.++||+ |.++.+. ..++|.+|... .|...-.+...
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~-~~~aW~Pk~g~la~~~--~d~~Vkvy~r~---~we~~f~Lr~~-- 229 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRIC-TRLAWHPKGGTLAVPP--VDNTVKVYSRK---GWELQFKLRDK-- 229 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCcccccccccee-eeeeecCCCCeEEeec--cCCeEEEEccC---Cceeheeeccc--
Confidence 45689999999987655433211 112233 34677999 5555444 45788888753 47655554432
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
... ..-+++..||.|+|| ++.-..|.|.+|+++
T Consensus 230 ~~s--------s~~~~~~wsPnG~Yi-AAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 230 LSS--------SKFSDLQWSPNGKYI-AASTLDGQILVWNVD 262 (933)
T ss_pred ccc--------cceEEEEEcCCCcEE-eeeccCCcEEEEecc
Confidence 111 235799999999999 555678999999996
No 140
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.95 E-value=3.3 Score=39.49 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=76.0
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
+..|=-.|-.+++. .+..|+ .|+.|+.|.. .|||.. ++ |+-+..|.++.. ++.. .....++.+...
T Consensus 82 ~gaiGhLdP~tGev-~~ypLg-~Ga~Phgiv~--gpdg~~-Wi-td~~~aI~R~dp-kt~e---vt~f~lp~~~a~---- 147 (353)
T COG4257 82 TGAIGHLDPATGEV-ETYPLG-SGASPHGIVV--GPDGSA-WI-TDTGLAIGRLDP-KTLE---VTRFPLPLEHAD---- 147 (353)
T ss_pred cccceecCCCCCce-EEEecC-CCCCCceEEE--CCCCCe-eE-ecCcceeEEecC-cccc---eEEeecccccCC----
Confidence 34444344444443 357886 5999999887 999984 33 333337777754 1111 122233322111
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCC-CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg-~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
..-...++.++|+.-|+.-+| ++ ++ ||.+..+ .+ -+.|+|..
T Consensus 148 ----~nlet~vfD~~G~lWFt~q~G~yG-----rL-dPa~~~i----~v-----------------------fpaPqG~g 190 (353)
T COG4257 148 ----ANLETAVFDPWGNLWFTGQIGAYG-----RL-DPARNVI----SV-----------------------FPAPQGGG 190 (353)
T ss_pred ----CcccceeeCCCccEEEeeccccce-----ec-CcccCce----ee-----------------------eccCCCCC
Confidence 122356789999966655543 22 12 2221111 11 02235775
Q ss_pred cCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCC
Q 023927 186 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 238 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~ 238 (275)
|..++.+|||. +|+|. -.+..|.+| |+.+|.
T Consensus 191 ----pyGi~atpdGs-vwyas---------------lagnaiari--dp~~~~ 221 (353)
T COG4257 191 ----PYGICATPDGS-VWYAS---------------LAGNAIARI--DPFAGH 221 (353)
T ss_pred ----CcceEECCCCc-EEEEe---------------ccccceEEc--ccccCC
Confidence 99999999998 66654 125677766 667763
No 141
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.92 E-value=7.5 Score=40.90 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=57.7
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
++.+-....|.+||+.+++.+.++... .....+.| .+++++++.++ --+++|.++.... +.. ....+.
T Consensus 591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~-~~~~g~~latg-s~dg~I~iwD~~~-~~~---~~~~~~--- 658 (793)
T PLN00181 591 LASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQF-PSESGRSLAFG-SADHKVYYYDLRN-PKL---PLCTMI--- 658 (793)
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEE-eCCCCCEEEEE-eCCCeEEEEECCC-CCc---cceEec---
Confidence 344546678999999988877766542 13334443 23456665554 4456776665421 110 111111
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+. ......+.++ |+.+|+.+. .+++|.+||+..
T Consensus 659 --~h-----~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~ 691 (793)
T PLN00181 659 --GH-----SKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSM 691 (793)
T ss_pred --CC-----CCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCC
Confidence 11 0234567776 788775554 578999999854
No 142
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.87 E-value=5.7 Score=34.21 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=51.8
Q ss_pred CCeEEEEECCCCCeeEEEECCC-CCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGN-TGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~-~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
..+|..+|..+++.+-++.... +... ..........++.+|+.+. ++.|..+.. ++|+......+..++....-..
T Consensus 85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~g~l~~~d~-~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 85 DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-SGKLVALDP-KTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-CSEEEEEET-TTTEEEEEEESSTT-SS--EEE
T ss_pred eeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-cCcEEEEec-CCCcEEEEeecCCCCCCcceee
Confidence 3489999999998877643321 1111 1111111223888888866 577777763 4565433333322111000000
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
+....+...++ +| .+|+++....-+++ |+
T Consensus 162 ---~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 162 ---FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp ---ETTEEEEEECC-TT-EEEEECCTSSEEEE-ET
T ss_pred ---ecccccceEEE-CC-EEEEEcCCCeEEEE-EC
Confidence 01223455555 44 89999875543333 65
No 143
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.83 E-value=1.5 Score=41.59 Aligned_cols=66 Identities=21% Similarity=0.172 Sum_probs=41.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
+.|..|++.|||| |||+-| .+.|.+++ .+......+..++. ....|+. +.
T Consensus 2 ~~P~~~a~~pdG~-l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~------------------------v~~~~~~---gl 51 (331)
T PF07995_consen 2 NNPRSMAFLPDGR-LLVAER-SGRIWVVD-KDGSLKTPVADLPE------------------------VFADGER---GL 51 (331)
T ss_dssp SSEEEEEEETTSC-EEEEET-TTEEEEEE-TTTEECEEEEE-TT------------------------TBTSTTB---SE
T ss_pred CCceEEEEeCCCc-EEEEeC-CceEEEEe-CCCcCcceeccccc------------------------ccccccC---Cc
Confidence 3688999999986 789999 99999999 23211112222110 0112333 68
Q ss_pred ceEEECCC---CCEEEEEe
Q 023927 191 QMIQLSLD---GKRLYVTN 206 (275)
Q Consensus 191 r~~~LSpD---Gk~LyVAN 206 (275)
-.++++|+ ..+|||+-
T Consensus 52 lgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 52 LGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEEE-TTCCCC-EEEEEE
T ss_pred ccceeccccCCCCEEEEEE
Confidence 89999994 57899986
No 144
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.81 E-value=3 Score=39.40 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=43.2
Q ss_pred EEEEcCCCCEEEEEeCC-----CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCC
Q 023927 115 DFLISLDDRFLYFSNWL-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG 189 (275)
Q Consensus 115 dI~iSpDgrfLYVSNrg-----~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~ 189 (275)
.|++.+||.|+..+-++ +..|..|+.+ +++...+.+-. ...+......+.+-..|
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~----G~~~~~~~vP~----------------~~~~~~~~~~~~~~N~G 148 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD----GRVIRRFPVPA----------------AFLPDANGTSGRRNNRG 148 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC----CcccceEcccc----------------ccccccCccccccCCCC
Confidence 67787788755544444 2788888852 34444443311 11111110124444457
Q ss_pred CceEEECCCCCEEEEEe
Q 023927 190 PQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVAN 206 (275)
.-.|+++|||++||++.
T Consensus 149 ~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 149 FEGLAVSPDGRTLFAAM 165 (326)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 88999999999999998
No 145
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.79 E-value=13 Score=38.18 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=81.3
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCC-CCCEEEEeeccC----C--cEEEEEeC-CCCCeeEEEEEEe
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDP-SKDIGFVGCALA----S--TMVRFSKT-QDGSWNHEVAISV 96 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P-~g~~~YV~~eL~----s--tV~~~~~~-~~G~~~~~~vi~i 96 (275)
+.-..|++|..+..|+..-..+-+++ -|+.+.| +- +...+|.+ |.+ + ++--+-|. ..+++....+.++
T Consensus 181 ~draNl~L~~~~~~klEvL~yirTE~-dPl~~~F--s~~~~~qi~tV-E~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi 256 (545)
T PF11768_consen 181 KDRANLHLLSCSGGKLEVLSYIRTEN-DPLDVEF--SLNQPYQIHTV-EQSISVKGEPSADSCIYECSRNKLQRVSVTSI 256 (545)
T ss_pred chhccEEEEEecCCcEEEEEEEEecC-CcEEEEc--cCCCCcEEEEE-EEecCCCCCceeEEEEEEeecCceeEEEEEEE
Confidence 34457899999887654422222222 5888887 65 44555554 443 1 22112221 2335555555555
Q ss_pred cCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCC
Q 023927 97 KSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS 176 (275)
Q Consensus 97 ~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~ 176 (275)
+ ++..+.-++.||+...|-+.|- +++|..||.... ..+..+..+
T Consensus 257 p-----------L~s~v~~ca~sp~E~kLvlGC~-DgSiiLyD~~~~--~t~~~ka~~---------------------- 300 (545)
T PF11768_consen 257 P-----------LPSQVICCARSPSEDKLVLGCE-DGSIILYDTTRG--VTLLAKAEF---------------------- 300 (545)
T ss_pred e-----------cCCcceEEecCcccceEEEEec-CCeEEEEEcCCC--eeeeeeecc----------------------
Confidence 4 3356678889999999988887 889999997332 222111111
Q ss_pred CCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 177 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 177 ~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
-|..++..|+|..+.|+|
T Consensus 301 ------------~P~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 301 ------------IPTLIAWHPDGAIFVVGS 318 (545)
T ss_pred ------------cceEEEEcCCCcEEEEEc
Confidence 299999999999999999
No 146
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.68 E-value=1.3 Score=46.39 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=66.7
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+-|-....|.+||..++..+..+ .|+ -+|.+ +.+|+|+|+++=.+.|- ..|.++.. +.|.+ +..+
T Consensus 551 aTGSsD~tVRlWDv~~G~~VRiF-~GH--~~~V~-al~~Sp~Gr~LaSg~ed-~~I~iWDl-~~~~~----v~~l----- 615 (707)
T KOG0263|consen 551 ATGSSDRTVRLWDVSTGNSVRIF-TGH--KGPVT-ALAFSPCGRYLASGDED-GLIKIWDL-ANGSL----VKQL----- 615 (707)
T ss_pred ccCCCCceEEEEEcCCCcEEEEe-cCC--CCceE-EEEEcCCCceEeecccC-CcEEEEEc-CCCcc----hhhh-----
Confidence 33667789999999999776545 343 36676 46789999976555442 33333332 33322 1111
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
.+.. +...-|.+|.||.-| ||.-++++|.+||+...
T Consensus 616 ~~Ht-----~ti~SlsFS~dg~vL-asgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 616 KGHT-----GTIYSLSFSRDGNVL-ASGGADNSVRLWDLTKV 651 (707)
T ss_pred hccc-----CceeEEEEecCCCEE-EecCCCCeEEEEEchhh
Confidence 1111 456789999999955 88899999999999664
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=92.37 E-value=0.43 Score=49.63 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=63.9
Q ss_pred cCCCccccccCCccCCeEEEEECCCCCeeE-----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCC
Q 023927 13 TKGFNLQHVSDGLYGRHLFVYSWPDGELKQ-----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGS 87 (275)
Q Consensus 13 ~~g~~~~~~~~g~~~d~I~v~d~~~~k~~~-----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~ 87 (275)
++.|+.+.|+-+-....|.+|.+.++.+-. .-.|...+.--..+|| ||=..-+..+.-.++||-.+.. ++++
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRf--HPLAadvLa~asyd~Ti~lWDl-~~~~ 711 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRF--HPLAADVLAVASYDSTIELWDL-ANAK 711 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEe--cchhhhHhhhhhccceeeeeeh-hhhh
Confidence 344555666555567789999999874422 1111111223344565 8866655555555555555432 2222
Q ss_pred eeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 88 WNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 88 ~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
... .+.|.. ..+-+|+-|||||.+ ++---++.|+||.-..
T Consensus 712 ~~~---------~l~gHt-----dqIf~~AWSpdGr~~-AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 712 LYS---------RLVGHT-----DQIFGIAWSPDGRRI-ATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhh---------eeccCc-----CceeEEEECCCCcce-eeeecCceEEEeCCCC
Confidence 111 112221 456899999999977 4444589999999644
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.01 E-value=5.5 Score=39.90 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=82.7
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc-c
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL-K 100 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~-~ 100 (275)
.+|--...|++|.+++++++..+. .-+-+.. .+.|+-|+.+++.+ .-++.|.++.-.. ...+.+.-+..|. .
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~---aHYQ~IT-cL~fs~dgs~iiTg-skDg~V~vW~l~~--lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLS---AHYQSIT-CLKFSDDGSHIITG-SKDGAVLVWLLTD--LVSADNDHSVKPLHI 169 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHH---hhcccee-EEEEeCCCcEEEec-CCCccEEEEEEEe--ecccccCCCccceee
Confidence 455456789999999998765441 1223332 24459999976654 5667777775310 0111111111111 1
Q ss_pred ccccccCCCCCceeEEEEcCCC--CEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 101 VQNWILPEMPGLITDFLISLDD--RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDg--rfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
+.+.. -..+|+.|+.-| -+||-+.- +.+|.+||++. +.|+-++.. |+
T Consensus 170 f~~Ht-----lsITDl~ig~Gg~~~rl~TaS~-D~t~k~wdlS~---g~LLlti~f----p~------------------ 218 (476)
T KOG0646|consen 170 FSDHT-----LSITDLQIGSGGTNARLYTASE-DRTIKLWDLSL---GVLLLTITF----PS------------------ 218 (476)
T ss_pred eccCc-----ceeEEEEecCCCccceEEEecC-CceEEEEEecc---ceeeEEEec----CC------------------
Confidence 22222 246788888764 34555443 67999999965 566655543 21
Q ss_pred ccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
. +..++++|-++++||.+
T Consensus 219 ------s----i~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 219 ------S----IKAVALDPAERVVYIGT 236 (476)
T ss_pred ------c----ceeEEEcccccEEEecC
Confidence 1 78999999999999998
No 149
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=91.83 E-value=1.9 Score=40.82 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=61.3
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..|-.+.++++||++.+|.+++++- ...-+ .++|+|+.-++-...+- +|-.+.. +. +.++.-...++
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~a---~~~v~--sl~fspnrywL~~at~~--sIkIwdl-~~-----~~~v~~l~~d~ 274 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLEA---FDIVN--SLCFSPNRYWLCAATAT--SIKIWDL-ES-----KAVVEELKLDG 274 (315)
T ss_pred ecCCCCceEEEEEccCCceeEeccC---CCeEe--eEEecCCceeEeeccCC--ceEEEec-cc-----hhhhhhccccc
Confidence 3466788999999999998775543 22333 35569986544443332 3333332 21 12221111111
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
.|.....-+..+.-++.|+||..||. -.-.|-|++|.|.
T Consensus 275 ~g~s~~~~~~~clslaws~dG~tLf~-g~td~~irv~qv~ 313 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQTLFA-GYTDNVIRVWQVA 313 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcEEEe-eecCCcEEEEEee
Confidence 22111112357778899999999984 4457899999873
No 150
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.58 E-value=11 Score=36.14 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=52.8
Q ss_pred CCccCCeEEEEECCCCCeeEE-EECCCCCccceEEEEEeCCCCCEEEEee-ccC--------CcEEEEEeCCCCCeeEEE
Q 023927 23 DGLYGRHLFVYSWPDGELKQT-LDLGNTGLIPLEIRFLHDPSKDIGFVGC-ALA--------STMVRFSKTQDGSWNHEV 92 (275)
Q Consensus 23 ~g~~~d~I~v~d~~~~k~~~~-i~Lg~~G~gP~~v~f~f~P~g~~~YV~~-eL~--------stV~~~~~~~~G~~~~~~ 92 (275)
.|..--+|+++|+++++.+.. +.- . .... +.+.++++.+|-.. .-. ..-+.++.-.++.-....
T Consensus 145 ~G~e~~~l~v~Dl~tg~~l~d~i~~-~---~~~~--~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~l 218 (414)
T PF02897_consen 145 GGSEWYTLRVFDLETGKFLPDGIEN-P---KFSS--VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDEL 218 (414)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEEE-E---ESEE--EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EE
T ss_pred CCCceEEEEEEECCCCcCcCCcccc-c---ccce--EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCee
Confidence 355556799999999977652 232 1 1222 44589987765553 221 111222221211111122
Q ss_pred EEEecCccccccccCCCCCc-eeEEEEcCCCCEEEEEeCCCC---cEEEEEecC
Q 023927 93 AISVKSLKVQNWILPEMPGL-ITDFLISLDDRFLYFSNWLHG---DIRQYNIED 142 (275)
Q Consensus 93 vi~i~~~~~~g~~~~~~~~~-~adI~iSpDgrfLYVSNrg~~---sIavfdI~~ 142 (275)
+..-... .. ...+.+|+|+|||+++...+. .|...+..+
T Consensus 219 vfe~~~~-----------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 219 VFEEPDE-----------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEC-TTC-----------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEeecCC-----------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 2222111 12 458899999999998655443 566677644
No 151
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.53 E-value=1.3 Score=47.23 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=66.6
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
....-.|.+||..++|.+..+. |.+-+=-.|.|+|||+++-+. .++++|-++.- ..|.+ ...+.+
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~----gh~nritd~~FS~DgrWlisa-smD~tIr~wDl-pt~~l--ID~~~v------- 616 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFW----GHGNRITDMTFSPDGRWLISA-SMDSTIRTWDL-PTGTL--IDGLLV------- 616 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhh----ccccceeeeEeCCCCcEEEEe-ecCCcEEEEec-cCcce--eeeEec-------
Confidence 3355679999999888766442 223333357889999998654 67888888764 22222 222222
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
...+..+.+||.|.||-.+-.+++.|..|.
T Consensus 617 ------d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 617 ------DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ------CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 256789999999999999999999998887
No 152
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.52 E-value=3.6 Score=43.39 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=61.6
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccC
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILP 107 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~ 107 (275)
.+|.+|++....=+.++.-.. =--. .+|||.-.+-|+++=|+..|=.+ .|+..++.-| .
T Consensus 390 KTVRLWh~~~~~CL~~F~Hnd---fVTc--VaFnPvDDryFiSGSLD~KvRiW--------------sI~d~~Vv~W--~ 448 (712)
T KOG0283|consen 390 KTVRLWHPGRKECLKVFSHND---FVTC--VAFNPVDDRYFISGSLDGKVRLW--------------SISDKKVVDW--N 448 (712)
T ss_pred ccEEeecCCCcceeeEEecCC---eeEE--EEecccCCCcEeecccccceEEe--------------ecCcCeeEee--h
Confidence 456666666554443332211 1112 34599888888887775554433 4444444323 1
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 023927 108 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 153 (275)
Q Consensus 108 ~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~ 153 (275)
++....+++..+|||++..|-.- .|..+.|++.+ .+++.+..
T Consensus 449 Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~---lk~~~~~~ 490 (712)
T KOG0283|consen 449 DLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEG---LKLVSDFH 490 (712)
T ss_pred hhhhhheeEEeccCCceEEEEEe-ccEEEEEEccC---CeEEEeee
Confidence 23467899999999999988776 57789999854 55554433
No 153
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=3.6 Score=40.44 Aligned_cols=130 Identities=14% Similarity=0.196 Sum_probs=77.5
Q ss_pred CeEEEEECCCCCeeE-EEECCCC------CccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 28 RHLFVYSWPDGELKQ-TLDLGNT------GLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 28 d~I~v~d~~~~k~~~-~i~Lg~~------G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+.+.+||+...+.+= .-.++.+ +--+-.++|+ .++-.+-|+.|=-.+.|-.|.. .=..+.+..++-
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl-~g~~~~~fat~T~~hqvR~YDt----~~qRRPV~~fd~-- 245 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL-EGSPNYKFATITRYHQVRLYDT----RHQRRPVAQFDF-- 245 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceec-CCCCCceEEEEecceeEEEecC----cccCcceeEecc--
Confidence 789999998763222 1222211 1112234452 3334666666555455444432 112234444442
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCcc
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE 180 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~ 180 (275)
+.+..+.+-+.|+|.|+|+.|- ++.++.||+.. .++.+.- .
T Consensus 246 --------~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~---~kl~g~~-~-------------------------- 286 (412)
T KOG3881|consen 246 --------LENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRG---GKLLGCG-L-------------------------- 286 (412)
T ss_pred --------ccCcceeeeecCCCcEEEEecc-cchhheecccC---ceeeccc-c--------------------------
Confidence 2256789999999999999998 77899999844 5553321 1
Q ss_pred ccCcccCCCCceEEECCCCCEEEEEe
Q 023927 181 VQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 181 ~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+-+.|.+|.+...|.+++|--+-
T Consensus 287 ---kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 287 ---KGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ---CCccCCcceEEEcCCCceEEeec
Confidence 12346799999999998766654
No 154
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=91.10 E-value=1.9 Score=44.02 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=61.5
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec--cCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA--LASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e--L~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
|+--.++.|||++..- .+++++ |||.-.| |+|.|+++-+.+= |.+.|-+|+.. ..+++..+..
T Consensus 290 GfMPAkvtifnlr~~~---v~df~e---gpRN~~~-fnp~g~ii~lAGFGNL~G~mEvwDv~-----n~K~i~~~~a--- 354 (566)
T KOG2315|consen 290 GFMPAKVTIFNLRGKP---VFDFPE---GPRNTAF-FNPHGNIILLAGFGNLPGDMEVWDVP-----NRKLIAKFKA--- 354 (566)
T ss_pred ecccceEEEEcCCCCE---eEeCCC---CCccceE-ECCCCCEEEEeecCCCCCceEEEecc-----chhhcccccc---
Confidence 4445667777775432 357765 9998654 8999998766531 55666666531 1122222221
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeC-----CCCcEEEEEecC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNW-----LHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNr-----g~~sIavfdI~~ 142 (275)
...+-+..||||+|+|++.- -+|.|.+|+.+.
T Consensus 355 ---------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 355 ---------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ---------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 23466779999999999874 479999999843
No 155
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=0.86 Score=47.25 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=81.0
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEe---C-CC-CCeeEEEEEEe
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSK---T-QD-GSWNHEVAISV 96 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~---~-~~-G~~~~~~vi~i 96 (275)
..|-....|.|||+.+.+-+|++. |. - --...+ .|||.-+. .++|--++||-.++- . ++ =.+....+..|
T Consensus 201 IsgaDD~tiKvWDyQtk~CV~TLe-GH-t-~Nvs~v-~fhp~lpi-iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTKSCVQTLE-GH-T-NNVSFV-FFHPELPI-IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred EecCCCceEEEeecchHHHHHHhh-cc-c-ccceEE-EecCCCcE-EEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 445567889999999887666443 11 1 111112 36999885 455555688866642 1 11 01222233232
Q ss_pred cCcc--------cc-ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeee
Q 023927 97 KSLK--------VQ-NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAV 167 (275)
Q Consensus 97 ~~~~--------~~-g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~ 167 (275)
...+ ++ |...-.++..--.+.+++.||-+|. .|++|.+-.+..-+.++ .+.-|..+| +.|.
T Consensus 276 ~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa---~~~ei~~~~~ks~~~~~---ev~DgErL~----LsvK 345 (794)
T KOG0276|consen 276 AAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWA---VHSEIQAVNLKSVGAQK---EVTDGERLP----LSVK 345 (794)
T ss_pred eecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEE---cCceeeeeeceeccCcc---cccCCcccc----chhh
Confidence 2110 10 1111123344446778889998886 48888887774432221 111111111 1111
Q ss_pred cCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 168 TDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 168 ~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
| .-.-+- .|+.++-||+||++-|++
T Consensus 346 e----------Lgs~ei----yPq~L~hsPNGrfV~Vcg 370 (794)
T KOG0276|consen 346 E----------LGSVEI----YPQTLAHSPNGRFVVVCG 370 (794)
T ss_pred h----------cccccc----chHHhccCCCCcEEEEec
Confidence 1 000122 399999999999998887
No 156
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=90.98 E-value=0.51 Score=30.05 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=28.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
..|..|++++++++||-+++..+.|.+++++.
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 46789999999999999999999999999843
No 157
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=90.86 E-value=0.54 Score=46.43 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=47.1
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeC--CCCCeeEE----EEEE------ecC----------ccccccccCCCCCceeE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHE----VAIS------VKS----------LKVQNWILPEMPGLITD 115 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~--~~G~~~~~----~vi~------i~~----------~~~~g~~~~~~~~~~ad 115 (275)
++.|=|-+++||+|=|-+.|..|... .+=+++-+ -.+. +.. ..+.|.. +.+.|.=
T Consensus 317 ilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrk---l~GGPQM 393 (476)
T KOG0918|consen 317 ILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRK---LRGGPQM 393 (476)
T ss_pred eEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCcc---ccCCcee
Confidence 77799999999999999999888652 12112111 1111 110 0112333 4478999
Q ss_pred EEEcCCCCEEEEEeCC
Q 023927 116 FLISLDDRFLYFSNWL 131 (275)
Q Consensus 116 I~iSpDgrfLYVSNrg 131 (275)
|.||.|||+|||+|-.
T Consensus 394 lQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 394 LQLSLDGKRLYVTNSL 409 (476)
T ss_pred EEeccCCcEEEEEchh
Confidence 9999999999999963
No 158
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.85 E-value=7 Score=39.35 Aligned_cols=103 Identities=13% Similarity=0.197 Sum_probs=67.7
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+++|-...+|.|||.+++.++..+.- -+.|.|..+ |+|+++..+++|-= ..|..++. .++.. ..+.+..-
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~a---h~apv~~~~-f~~~d~t~l~s~sD-d~v~k~~d-~s~a~---v~~~l~~h- 152 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYA---HQAPVHVTK-FSPQDNTMLVSGSD-DKVVKYWD-LSTAY---VQAELSGH- 152 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhh---ccCceeEEE-ecccCCeEEEecCC-CceEEEEE-cCCcE---EEEEecCC-
Confidence 36677888899999877655443332 347888765 79999999999764 44444443 22222 12233211
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+ ...=.+.++|-...+.||--=++.|+.||+..
T Consensus 153 -t--------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 153 -T--------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred -c--------ceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 1 12235568888888999988899999999855
No 159
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.82 E-value=4.3 Score=43.98 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=45.6
Q ss_pred eCCCCCEEEEeeccCCcEEEEEeCC------CC---------CeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCE
Q 023927 60 HDPSKDIGFVGCALASTMVRFSKTQ------DG---------SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRF 124 (275)
Q Consensus 60 f~P~g~~~YV~~eL~stV~~~~~~~------~G---------~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrf 124 (275)
|+|||++++.+.+= .-|.++.+.. -| .|. .+.+.. |. .+-..|+.-|||+++
T Consensus 77 ~S~dG~~lAsGSDD-~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk---~~~~l~----~H-----~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 77 FSPDGSYLASGSDD-RLVMIWERAEIGSGTVFGSTGGAKNVESWK---VVSILR----GH-----DSDVLDVNWSPDDSL 143 (942)
T ss_pred ECCCCCeEeeccCc-ceEEEeeecccCCcccccccccccccceee---EEEEEe----cC-----CCccceeccCCCccE
Confidence 49999999999774 4455555542 01 122 222221 11 145679999999997
Q ss_pred EEEEeCCCCcEEEEEe
Q 023927 125 LYFSNWLHGDIRQYNI 140 (275)
Q Consensus 125 LYVSNrg~~sIavfdI 140 (275)
| ||+-.+|+|.+|+-
T Consensus 144 l-vS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 144 L-VSVSLDNSVIIWNA 158 (942)
T ss_pred E-EEecccceEEEEcc
Confidence 6 99999999999996
No 160
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.70 E-value=18 Score=38.15 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=60.5
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
++.+.+...|.+||+.+++.+..+.- . ...-..+. |+|.....++++-.+++|.++... ++. ....+..
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~~~~-H-~~~V~~l~--~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~--~~~~~~~---- 616 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTEMKE-H-EKRVWSID--YSSADPTLLASGSDDGSVKLWSIN-QGV--SIGTIKT---- 616 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEEecC-C-CCCEEEEE--EcCCCCCEEEEEcCCCEEEEEECC-CCc--EEEEEec----
Confidence 34455778999999998877665532 2 22334444 587544455666667888777652 221 1122211
Q ss_pred ccccccCCCCCceeEEEE-cCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 101 VQNWILPEMPGLITDFLI-SLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~i-SpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
. .....+.+ +++|++|.++. ..+.|.+||+...
T Consensus 617 -~--------~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~ 650 (793)
T PLN00181 617 -K--------ANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNP 650 (793)
T ss_pred -C--------CCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCC
Confidence 0 12345566 45787765554 5789999999653
No 161
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=90.64 E-value=1 Score=44.28 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=70.2
Q ss_pred CCcc--ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEE
Q 023927 15 GFNL--QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEV 92 (275)
Q Consensus 15 g~~~--~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~ 92 (275)
-|+| ..++.|-...++.+||+.++....+++= . -.=-+.| +.+|||+++- ++.++++|..+... .| .+
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H-~~WVlcv--awsPDgk~iA-SG~~dg~I~lwdpk-tg----~~ 191 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-H-KNWVLCV--AWSPDGKKIA-SGSKDGSIRLWDPK-TG----QQ 191 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecC-C-ccEEEEE--EECCCcchhh-ccccCCeEEEecCC-CC----Cc
Confidence 3444 3467787888999999999988776652 2 2223344 4599999864 45567888777642 22 12
Q ss_pred EEEecCcc---ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 93 AISVKSLK---VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 93 vi~i~~~~---~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.....+.. +.+.+. --+++.|..| +.+|+-.+|+|++||+..
T Consensus 192 ~g~~l~gH~K~It~Law-------ep~hl~p~~r-~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAW-------EPLHLVPPCR-RLASSSKDGSVRIWDTKL 236 (480)
T ss_pred ccccccCcccceeEEee-------cccccCCCcc-ceecccCCCCEEEEEccC
Confidence 22222211 111111 1467899999 669999999999999954
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=90.60 E-value=3.8 Score=40.54 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=65.0
Q ss_pred CccCCeEEEEECCCC---C----eeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC------CC----
Q 023927 24 GLYGRHLFVYSWPDG---E----LKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ------DG---- 86 (275)
Q Consensus 24 g~~~d~I~v~d~~~~---k----~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~------~G---- 86 (275)
+-...+|.+|.+... + +.-.-.|+.....--.+|| +|+|..+ .++.=+++|+.+...+ +.
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~gelL-ASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGELL-ASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcCee-eecCCCceEEEEEecCcCCccccchhhh
Confidence 335678999988754 2 2212334433444556666 9999854 4555567777776531 11
Q ss_pred ---CeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 87 ---SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 87 ---~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.|..+++... +..-+.|+.-+||++|| ++-++.|++.+||+..
T Consensus 109 ~ke~w~v~k~lr~------------h~~diydL~Ws~d~~~l-~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 109 NKEKWVVKKVLRG------------HRDDIYDLAWSPDSNFL-VSGSVDNSVRLWDVHA 154 (434)
T ss_pred CccceEEEEEecc------------cccchhhhhccCCCcee-eeeeccceEEEEEecc
Confidence 1333332221 22467899999999999 7888999999999944
No 163
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=90.53 E-value=6.2 Score=40.28 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
..++++|+ ..|++=+..+.. |-+ ...|||.| .+-++. ..+--+++.- + ..+.+++-.. +
T Consensus 389 dk~v~lW~--~~k~~wt~~~~d----~~~-~~~fhpsg-~va~Gt-~~G~w~V~d~-e-----~~~lv~~~~d---~--- 447 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKIIED----PAE-CADFHPSG-VVAVGT-ATGRWFVLDT-E-----TQDLVTIHTD---N--- 447 (626)
T ss_pred cceEEEcc--CCceeEEEEecC----cee-EeeccCcc-eEEEee-ccceEEEEec-c-----cceeEEEEec---C---
Confidence 35688888 556665666643 222 23459999 444442 2233333321 1 1233333221 2
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 144 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~ 144 (275)
...+.++.||||.||=|..- +|.|-+|.|++.+
T Consensus 448 ----~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 448 ----EQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSANG 480 (626)
T ss_pred ----CceEEEEEcCCCCEEEEecC-CCeEEEEEECCCC
Confidence 35579999999999988765 6899999997743
No 164
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=90.36 E-value=0.42 Score=37.26 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=17.0
Q ss_pred CCceEEECCCCCEEEEEe
Q 023927 189 GPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVAN 206 (275)
.|+.+++|||+|+||||.
T Consensus 55 ~aNGI~~s~~~k~lyVa~ 72 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVAS 72 (86)
T ss_pred CCceEEEcCCCCEEEEEe
Confidence 399999999999999998
No 165
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.34 E-value=6.8 Score=38.84 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=64.4
Q ss_pred CCCcCCcCCCccccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCC
Q 023927 7 GAPLAFTKGFNLQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDG 86 (275)
Q Consensus 7 ~~p~~~~~g~~~~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G 86 (275)
++|+..++|-.+.=..+......|+++|++.+...+ |. ++.+.-. .-.++|+|++++-+.--++.--++.++.+|
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt-~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LT-NGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cc-cCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 345555555333323445578899999999886433 31 2222222 223599998876665554444555554444
Q ss_pred CeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCc--EEEEEecC
Q 023927 87 SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD--IRQYNIED 142 (275)
Q Consensus 87 ~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~s--IavfdI~~ 142 (275)
.-. +.++... . ..+--.+||||+++-..++..+. |..+++..
T Consensus 316 ~~~--~riT~~~---~---------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 316 SQV--TRLTFSG---G---------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred Cce--eEeeccC---C---------CCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 322 2222110 1 11255699999999888754343 55555533
No 166
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=90.33 E-value=14 Score=35.35 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
.-+...-+..+||+++++.++.+. |+.|. -. .+.+.|....-||++.-+.+--++...+ | ...|..
T Consensus 160 lT~SGD~TCalWDie~g~~~~~f~-GH~gD-V~--slsl~p~~~ntFvSg~cD~~aklWD~R~-~--~c~qtF------- 225 (343)
T KOG0286|consen 160 LTGSGDMTCALWDIETGQQTQVFH-GHTGD-VM--SLSLSPSDGNTFVSGGCDKSAKLWDVRS-G--QCVQTF------- 225 (343)
T ss_pred EecCCCceEEEEEcccceEEEEec-CCccc-EE--EEecCCCCCCeEEecccccceeeeeccC-c--ceeEee-------
Confidence 334456678899999999988765 44333 33 3445886666899988766655554321 1 222222
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
.|.. .-...+.+.|+|- -+++.-.+.+.+.||+...
T Consensus 226 ~ghe-----sDINsv~ffP~G~-afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 226 EGHE-----SDINSVRFFPSGD-AFATGSDDATCRLYDLRAD 261 (343)
T ss_pred cccc-----cccceEEEccCCC-eeeecCCCceeEEEeecCC
Confidence 2211 3457899999997 7799999999999999653
No 167
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.19 E-value=13 Score=37.53 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=79.4
Q ss_pred ccCCccCCeEEEEECCCC-CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 21 VSDGLYGRHLFVYSWPDG-ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~-k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
++.|-|.+.|.+||.... ..+.+++-+ -|.+-. +|=|.|... +.+-+++|=++.-...|.+ +..-
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~elnhg----~pVe~v-l~lpsgs~i--asAgGn~vkVWDl~~G~ql-----l~~~-- 234 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELNHG----CPVESV-LALPSGSLI--ASAGGNSVKVWDLTTGGQL-----LTSM-- 234 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEecCC----CceeeE-EEcCCCCEE--EEcCCCeEEEEEecCCcee-----hhhh--
Confidence 466889999999999887 444445443 477754 456776643 2233455555554322211 1100
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
..-. ...+-+++.-|++.|| |--.++.|.+|++++ -+++-....-|
T Consensus 235 -~~H~------KtVTcL~l~s~~~rLl-S~sLD~~VKVfd~t~---~Kvv~s~~~~~----------------------- 280 (487)
T KOG0310|consen 235 -FNHN------KTVTCLRLASDSTRLL-SGSLDRHVKVFDTTN---YKVVHSWKYPG----------------------- 280 (487)
T ss_pred -hccc------ceEEEEEeecCCceEe-ecccccceEEEEccc---eEEEEeeeccc-----------------------
Confidence 0000 2346777888999886 556788999999854 56655443311
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEe
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.==.+++|||++.+++.=
T Consensus 281 ---------pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 281 ---------PVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred ---------ceeeEEecCCCceEEEec
Confidence 123689999999999875
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=90.15 E-value=1.9 Score=40.77 Aligned_cols=103 Identities=22% Similarity=0.364 Sum_probs=66.0
Q ss_pred ccCCccCCeEEEEECCCC-CeeEEEECCC----------CCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCe
Q 023927 21 VSDGLYGRHLFVYSWPDG-ELKQTLDLGN----------TGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSW 88 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~-k~~~~i~Lg~----------~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~ 88 (275)
+.+|+...++.+||++.+ |.+ +++. ...-.+.+-| .+...++-+.|. ...++.+.++ ..|.+
T Consensus 168 llaGyEsghvv~wd~S~~~~~~---~~~~~~kv~~~~ash~qpvlsldy--as~~~rGisgga-~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKII---QLPQSSKVESPNASHKQPVLSLDY--ASSCDRGISGGA-DDKLVMYSLNHSTGSL 241 (323)
T ss_pred EEEeccCCeEEEEEccCCceee---ccccccccccchhhccCcceeeee--chhhcCCcCCCc-cccceeeeeccccCcc
Confidence 377999999999999997 333 2211 0111122223 555555555544 3566667664 34777
Q ss_pred eEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 89 NHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 89 ~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.....+.+... ..+.+.|-||+|-|=-+-| ++.|+||.-..
T Consensus 242 q~~~e~~lknp------------Gv~gvrIRpD~KIlATAGW-D~RiRVyswrt 282 (323)
T KOG0322|consen 242 QIRKEITLKNP------------GVSGVRIRPDGKILATAGW-DHRIRVYSWRT 282 (323)
T ss_pred cccceEEecCC------------CccceEEccCCcEEeeccc-CCcEEEEEecc
Confidence 77666666543 3368899999998877777 55899999854
No 169
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.98 E-value=19 Score=34.82 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=72.3
Q ss_pred CCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEE
Q 023927 49 TGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS 128 (275)
Q Consensus 49 ~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVS 128 (275)
.+..-.+++++-...+.++|..+=-+++|-+|.. .|.... + +..+..-. +|...+-.-|---|-.|||+
T Consensus 136 ~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~----~f~~~~---~-~g~F~DP~---iPagyAPFnIqnig~~lyVt 204 (336)
T TIGR03118 136 QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG----SFRPPP---L-PGSFIDPA---LPAGYAPFNVQNLGGTLYVT 204 (336)
T ss_pred CcceeeeeEEeecCCCceEEEeccCCCceEEecC----cccccc---C-CCCccCCC---CCCCCCCcceEEECCeEEEE
Confidence 4666778888777778999999888888888842 443321 1 22222212 22333333334456678887
Q ss_pred e-------------CCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEE
Q 023927 129 N-------------WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL 195 (275)
Q Consensus 129 N-------------rg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~L 195 (275)
= .|++-|.+|+. .++|+.++..+|..-. |..|++
T Consensus 205 YA~qd~~~~d~v~G~G~G~VdvFd~----~G~l~~r~as~g~LNa-----------------------------PWG~a~ 251 (336)
T TIGR03118 205 YAQQDADRNDEVAGAGLGYVNVFTL----NGQLLRRVASSGRLNA-----------------------------PWGLAI 251 (336)
T ss_pred EEecCCcccccccCCCcceEEEEcC----CCcEEEEeccCCcccC-----------------------------Cceeee
Confidence 5 35678888886 3678888877765322 889999
Q ss_pred CC------CCCEEEEEe
Q 023927 196 SL------DGKRLYVTN 206 (275)
Q Consensus 196 Sp------DGk~LyVAN 206 (275)
.| .| .|+|.|
T Consensus 252 APa~FG~~sg-~lLVGN 267 (336)
T TIGR03118 252 APESFGSLSG-ALLVGN 267 (336)
T ss_pred ChhhhCCCCC-CeEEee
Confidence 65 45 499999
No 170
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=89.76 E-value=22 Score=34.99 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccc
Q 023927 23 DGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 23 ~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~ 102 (275)
-|-..|.-++|+..++... ..+......--.+.| +-+|.++ +.+.|++.|.++.... |. ....+. ...
T Consensus 81 TGGgDD~AflW~~~~ge~~--~eltgHKDSVt~~~F--shdgtlL-ATGdmsG~v~v~~~st-g~----~~~~~~-~e~- 148 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGEFA--GELTGHKDSVTCCSF--SHDGTLL-ATGDMSGKVLVFKVST-GG----EQWKLD-QEV- 148 (399)
T ss_pred ecCCCceEEEEEccCCcce--eEecCCCCceEEEEE--ccCceEE-EecCCCccEEEEEccc-Cc----eEEEee-ccc-
Confidence 3667788889998888743 233334444555555 7777743 5667888888887532 21 111221 011
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+-..=+.-+|-+++|.+- -.+++|+.|.|..
T Consensus 149 --------~dieWl~WHp~a~illAG-~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 149 --------EDIEWLKWHPRAHILLAG-STDGSVWMWQIPS 179 (399)
T ss_pred --------CceEEEEecccccEEEee-cCCCcEEEEECCC
Confidence 122345678878877544 4589999999944
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=89.72 E-value=13 Score=38.44 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=36.5
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEE
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFS 81 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~ 81 (275)
...+++|.|||+.++.+..++.+...+..-..+ |-+|-|.+|+ .+--.++|+++.
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~-frWS~DdKy~--Arm~~~sisIyE 332 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI-FRWSHDDKYF--ARMTGNSISIYE 332 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccce-EEeccCCcee--EEeccceEEEEe
Confidence 347899999999999888877774322222221 4558899954 444447777764
No 172
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.66 E-value=4 Score=40.06 Aligned_cols=140 Identities=13% Similarity=0.158 Sum_probs=82.4
Q ss_pred cccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC--------CC----
Q 023927 20 HVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD--------GS---- 87 (275)
Q Consensus 20 ~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~--------G~---- 87 (275)
.++.|-+...|.+||++.+..+.+++- .+| .-++|.+ +. .. ++.|.-+.+|-++.++.. ..
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G-~V~Gi~v--~~-~~--~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gI 153 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKA-HEG-LVRGICV--TQ-TS--FFTVGDDKTVKQWKIDGPPLHTILGKSVYLGI 153 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeec-ccC-ceeeEEe--cc-cc--eEEecCCcceeeeeccCCcceeeecccccccc
Confidence 346688889999999999877766664 232 2456665 43 44 444455555554442110 00
Q ss_pred ---eeE------EEEEEec------CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEE
Q 023927 88 ---WNH------EVAISVK------SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQI 152 (275)
Q Consensus 88 ---~~~------~~vi~i~------~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v 152 (275)
|.. -+.|+|= |..--.|..+ ...-|..+|-..++-+||+.+++|..||... ++| +..|
T Consensus 154 dh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D----ti~svkfNpvETsILas~~sDrsIvLyD~R~-~~P--l~KV 226 (433)
T KOG0268|consen 154 DHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD----SISSVKFNPVETSILASCASDRSIVLYDLRQ-ASP--LKKV 226 (433)
T ss_pred ccccccccccccCceeeecccccCCccceeecCCC----ceeEEecCCCcchheeeeccCCceEEEeccc-CCc--ccee
Confidence 000 0111111 1110123222 4567899999999999999999999999844 222 2223
Q ss_pred EecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 153 WVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 153 ~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.+ +.+ ++.++.+| ..+.||+-
T Consensus 227 i~----------------------------~mR----TN~IswnP-eafnF~~a 247 (433)
T KOG0268|consen 227 IL----------------------------TMR----TNTICWNP-EAFNFVAA 247 (433)
T ss_pred ee----------------------------ecc----ccceecCc-cccceeec
Confidence 22 556 89999999 55555554
No 173
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.18 E-value=4.1 Score=39.25 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc--cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 62 PSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV--QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 62 P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~--~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
.+|+-.||..=-.+.+.--.++ ++...-.++.+....+ +|..+| -.| +. .||| ||++|.+.++|..+|
T Consensus 160 ~~g~p~yVTa~~~sD~~~gWR~--~~~~gG~vidv~s~evl~~GLsmP---hSP---RW-hdgr-LwvldsgtGev~~vD 229 (335)
T TIGR03032 160 DDGEPRYVTALSQSDVADGWRE--GRRDGGCVIDIPSGEVVASGLSMP---HSP---RW-YQGK-LWLLNSGRGELGYVD 229 (335)
T ss_pred eCCeEEEEEEeeccCCcccccc--cccCCeEEEEeCCCCEEEcCccCC---cCC---cE-eCCe-EEEEECCCCEEEEEc
Confidence 5678888874322222211111 1122234566664432 244322 221 11 2555 999999999999998
Q ss_pred ecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeC
Q 023927 140 IEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 140 I~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANs 207 (275)
.+. ++...+.+++ | -||.+++- |++|+|.=|
T Consensus 230 ~~~-G~~e~Va~vp-----------------------------G-----~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 230 PQA-GKFQPVAFLP-----------------------------G-----FTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCC-CcEEEEEECC-----------------------------C-----CCccccee--CCEEEEEec
Confidence 532 3344443332 3 29999987 999999765
No 174
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.98 E-value=14 Score=38.18 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=38.2
Q ss_pred EEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcE
Q 023927 57 RFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDI 135 (275)
Q Consensus 57 ~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sI 135 (275)
+..|+|+|+.+++... .+.+.++... ..+.+ .++.+......- .++..+.++.+||||++|.+... +.|
T Consensus 401 ~PsWspDG~~lw~v~d-g~~~~~v~~~~~~gql---~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~~--g~v 470 (591)
T PRK13616 401 RPSWSLDADAVWVVVD-GNTVVRVIRDPATGQL---ARTPVDASAVAS----RVPGPISELQLSRDGVRAAMIIG--GKV 470 (591)
T ss_pred CceECCCCCceEEEec-CcceEEEeccCCCceE---EEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEEC--CEE
Confidence 3556999887776643 2344444332 22222 112222111110 13356899999999999987663 344
Q ss_pred EE
Q 023927 136 RQ 137 (275)
Q Consensus 136 av 137 (275)
.+
T Consensus 471 ~V 472 (591)
T PRK13616 471 YL 472 (591)
T ss_pred EE
Confidence 44
No 175
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.73 E-value=5.7 Score=40.44 Aligned_cols=27 Identities=37% Similarity=0.652 Sum_probs=23.5
Q ss_pred CCcEEEEEecCCCCCeEEEEEEeccee
Q 023927 132 HGDIRQYNIEDPKNPVLTGQIWVGGLF 158 (275)
Q Consensus 132 ~~sIavfdI~~~~~~~lv~~v~~gG~~ 158 (275)
.-.|.+|||+++.+|++++++..-|.+
T Consensus 97 ~t~i~vYDIsD~~~P~~~~~~~~~G~y 123 (521)
T PF09826_consen 97 STKITVYDISDPSNPKLLREIEIEGSY 123 (521)
T ss_pred eeEEEEEECCCCCCceEEEEEEeeeEE
Confidence 457899999999999999999887765
No 176
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.63 E-value=8.6 Score=40.89 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=56.2
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecC-cccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS-LKVQ 102 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~-~~~~ 102 (275)
...+++|.+|+.++.|-+.++.-+ .-++.-|=|..++.-++ ..+|.+..-..++... +...
T Consensus 390 Sga~~SikiWn~~t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G------------~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 390 SGAGESIKIWNRDTLKCIRTITCG------YILASKFVPGDRYIVLG------------TKNGELQVFDLASASLVETIR 451 (888)
T ss_pred ecCCCcEEEEEccCcceeEEeccc------cEEEEEecCCCceEEEe------------ccCCceEEEEeehhhhhhhhh
Confidence 346799999999999888776542 22233357888866555 2345443333332210 1111
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
. -.+..-.|.++||++.. |+--.+.+|.-|+.
T Consensus 452 A-----HdgaIWsi~~~pD~~g~-vT~saDktVkfWdf 483 (888)
T KOG0306|consen 452 A-----HDGAIWSISLSPDNKGF-VTGSADKTVKFWDF 483 (888)
T ss_pred c-----cccceeeeeecCCCCce-EEecCCcEEEEEeE
Confidence 0 01344589999999976 55566788888885
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=88.41 E-value=9.5 Score=36.61 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=67.8
Q ss_pred CCccccccCCccCCeEEEEECCCC--CeeEEEECC----CCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC--CC
Q 023927 15 GFNLQHVSDGLYGRHLFVYSWPDG--ELKQTLDLG----NTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ--DG 86 (275)
Q Consensus 15 g~~~~~~~~g~~~d~I~v~d~~~~--k~~~~i~Lg----~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~--~G 86 (275)
|..|+-|+- .+|.+.+|.+... +.....-|. .+-.+|+. .|=++.-....-..+-++-|.+++.... .|
T Consensus 110 g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlT-SFDWne~dp~~igtSSiDTTCTiWdie~~~~~ 186 (364)
T KOG0290|consen 110 GVYPDLLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLT-SFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG 186 (364)
T ss_pred ccCcchhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCccc-ccccccCCcceeEeecccCeEEEEEEeecccc
Confidence 455533344 7899999999853 322222221 12234553 3444554555556666666666665421 11
Q ss_pred CeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 023927 87 SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 144 (275)
Q Consensus 87 ~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~ 144 (275)
.. ..|.|.-+ ....||+++.+++-+|+|.-.+|+|++||+..-+
T Consensus 187 ~v-kTQLIAHD-------------KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 187 TV-KTQLIAHD-------------KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred ce-eeEEEecC-------------cceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 11 12333222 2347999999999999999999999999996644
No 178
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.38 E-value=18 Score=38.29 Aligned_cols=111 Identities=23% Similarity=0.214 Sum_probs=64.6
Q ss_pred Cccccc---cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEE
Q 023927 16 FNLQHV---SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEV 92 (275)
Q Consensus 16 ~~~~~~---~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~ 92 (275)
|+|-|. ..|--..+|.+|.+...+++.-.+|.. .-- +..|.|+|+++.|++=- +.+ +|+...+-++....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~---lIT--Avcy~PdGk~avIGt~~-G~C-~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD---LIT--AVCYSPDGKGAVIGTFN-GYC-RFYDTEGLKLVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhh---hhe--eEEeccCCceEEEEEec-cEE-EEEEccCCeEEEee
Confidence 566553 667788999999999998877666642 122 34569999988877543 333 33333333444444
Q ss_pred EEEecCc-cccccccCCCCCceeEEEEcCCC--CEEEEEeCCCCcEEEEEecC
Q 023927 93 AISVKSL-KVQNWILPEMPGLITDFLISLDD--RFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 93 vi~i~~~-~~~g~~~~~~~~~~adI~iSpDg--rfLYVSNrg~~sIavfdI~~ 142 (275)
.|.+-.+ +..+ ...+.+-..|-. |-|-.|| +..|++||..+
T Consensus 490 ~I~~~~~Kk~~~-------~rITG~Q~~p~~~~~vLVTSn--DSrIRI~d~~~ 533 (712)
T KOG0283|consen 490 HIRLHNKKKKQG-------KRITGLQFFPGDPDEVLVTSN--DSRIRIYDGRD 533 (712)
T ss_pred eEeeccCccccC-------ceeeeeEecCCCCCeEEEecC--CCceEEEeccc
Confidence 4444432 2222 124444444321 3444443 67899999854
No 179
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.32 E-value=28 Score=34.35 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=75.9
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccce--EEEEEeCCCCCE---EEEeeccC--CcEEEEEeC-CCCCeeEEEEEEec
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPL--EIRFLHDPSKDI---GFVGCALA--STMVRFSKT-QDGSWNHEVAISVK 97 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~--~v~f~f~P~g~~---~YV~~eL~--stV~~~~~~-~~G~~~~~~vi~i~ 97 (275)
...-+.+||++ +|.+|.+..+. |- -|+.=|.=+|+. +.+++-.+ ++|.+|..+ ++|.++.. .-+
T Consensus 76 K~~GL~VYdL~-Gk~lq~~~~Gr----~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v---~~~ 147 (381)
T PF02333_consen 76 KKGGLYVYDLD-GKELQSLPVGR----PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV---TDP 147 (381)
T ss_dssp TTTEEEEEETT-S-EEEEE-SS-----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE----CBT
T ss_pred CCCCEEEEcCC-CcEEEeecCCC----cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc---CCC
Confidence 34579999996 66777776542 22 222111113332 33333222 456666554 33443221 100
Q ss_pred Cccc-cccccCCCCCceeEEEE--cC-CCCEEEEEeCCCCcEEEEEecCCCCCe----EEEEEEecceeecCCceeeecC
Q 023927 98 SLKV-QNWILPEMPGLITDFLI--SL-DDRFLYFSNWLHGDIRQYNIEDPKNPV----LTGQIWVGGLFRKGSPVVAVTD 169 (275)
Q Consensus 98 ~~~~-~g~~~~~~~~~~adI~i--Sp-DgrfLYVSNrg~~sIavfdI~~~~~~~----lv~~v~~gG~~~~~~~~~v~~~ 169 (275)
...+ .+. ..+..+++ |+ +|++--.-|+.++.+.||.+.+.++++ ++.+..++
T Consensus 148 ~~p~~~~~------~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-------------- 207 (381)
T PF02333_consen 148 AAPIATDL------SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-------------- 207 (381)
T ss_dssp TC-EE-SS------SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--------------
T ss_pred Cccccccc------ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--------------
Confidence 0001 111 23566666 44 576444445556899999997655554 44444432
Q ss_pred CCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCC
Q 023927 170 DGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 238 (275)
Q Consensus 170 ~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~ 238 (275)
.. |-.++.+..-.+||++= | +.-|-+++.+|+.|.
T Consensus 208 --------------sQ----~EGCVVDDe~g~LYvgE--------E--------~~GIW~y~Aep~~~~ 242 (381)
T PF02333_consen 208 --------------SQ----PEGCVVDDETGRLYVGE--------E--------DVGIWRYDAEPEGGN 242 (381)
T ss_dssp --------------S-----EEEEEEETTTTEEEEEE--------T--------TTEEEEEESSCCC-S
T ss_pred --------------Cc----ceEEEEecccCCEEEec--------C--------ccEEEEEecCCCCCC
Confidence 22 77788998889999985 3 445566677777654
No 180
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.15 E-value=11 Score=36.98 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=58.7
Q ss_pred eeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEc
Q 023927 40 LKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLIS 119 (275)
Q Consensus 40 ~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iS 119 (275)
++.++.+++ .+=. |+.+....++|++-|- --||+|.-+.++......+..+....+... -..-+|.-.
T Consensus 200 lVR~f~~~s---Q~EG--CVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aD------vEGlaly~~ 267 (381)
T PF02333_consen 200 LVREFKVGS---QPEG--CVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVAD------VEGLALYYG 267 (381)
T ss_dssp EEEEEE-SS----EEE--EEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-------EEEEEEEE-
T ss_pred EEEEecCCC---cceE--EEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccC------ccceEEEec
Confidence 344566643 2332 5669999999998665 789998766554444444444433222110 111345445
Q ss_pred CCC-CEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 120 LDD-RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 120 pDg-rfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
.+| .||.||+-|.|+.++|+...+ -..++...+
T Consensus 268 ~~g~gYLivSsQG~~sf~Vy~r~~~--~~~~g~f~i 301 (381)
T PF02333_consen 268 SDGKGYLIVSSQGDNSFAVYDREGP--NAYVGSFRI 301 (381)
T ss_dssp CCC-EEEEEEEGGGTEEEEEESSTT----EEEEEEE
T ss_pred CCCCeEEEEEcCCCCeEEEEecCCC--CcccceEEe
Confidence 666 499999999999999998553 345555554
No 181
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.11 E-value=3.6 Score=41.87 Aligned_cols=58 Identities=26% Similarity=0.419 Sum_probs=46.0
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceE
Q 023927 114 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI 193 (275)
Q Consensus 114 adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~ 193 (275)
+||+= -||++||+.+ .+.|.++++.++++.++++.+...| .|+.|
T Consensus 15 aDiVK-TDG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~--------------------------------~~~eL 59 (521)
T PF09826_consen 15 ADIVK-TDGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDG--------------------------------SPQEL 59 (521)
T ss_pred CcEEE-ECCCEEEEEe--CCEEEEEECCCchhceEEEEEecCC--------------------------------Chhhe
Confidence 68866 4999999999 5899999997667899999887632 18888
Q ss_pred EECCCCCEEEEEeCC
Q 023927 194 QLSLDGKRLYVTNSL 208 (275)
Q Consensus 194 ~LSpDGk~LyVANsl 208 (275)
-| +|.+|.|--+-
T Consensus 60 yl--~gdrLvVi~~~ 72 (521)
T PF09826_consen 60 YL--DGDRLVVIGSS 72 (521)
T ss_pred EE--cCCEEEEEEec
Confidence 88 67788876643
No 182
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.09 E-value=12 Score=35.26 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=64.5
Q ss_pred CeEEEEECCCCCeeEEEECCCC-------------CccceEEEEEeCCCCCEEEEeeccC----C--c-------EEEEE
Q 023927 28 RHLFVYSWPDGELKQTLDLGNT-------------GLIPLEIRFLHDPSKDIGFVGCALA----S--T-------MVRFS 81 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~-------------G~gP~~v~f~f~P~g~~~YV~~eL~----s--t-------V~~~~ 81 (275)
+.|..++.+ ++.++.+.++.. ..|.=. ++++|+|+.+|++.|-. + . +-.+.
T Consensus 112 p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~--la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~ 188 (326)
T PF13449_consen 112 PRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEG--LAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILR 188 (326)
T ss_pred CEEEEECCC-CcccceEccccccccccCccccccCCCCeEE--EEECCCCCEEEEEECccccCCCcccccccCceEEEEE
Confidence 899999977 777777766431 112222 56699999999999964 1 1 22333
Q ss_pred eC-CC-CCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCC-----CCcEEEEEecC
Q 023927 82 KT-QD-GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-----HGDIRQYNIED 142 (275)
Q Consensus 82 ~~-~~-G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg-----~~sIavfdI~~ 142 (275)
++ .+ |.....-.+.+++..... -...++||+.-+|++ |||=-|. .+.+++|.|+-
T Consensus 189 ~d~~~~~~~~~~~~y~ld~~~~~~-----~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 189 YDPKTPGEPVAEYAYPLDPPPTAP-----GDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ecCCCCCccceEEEEeCCcccccc-----CCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEc
Confidence 43 22 322222233444211100 125779999999999 6677776 56788888743
No 183
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.86 E-value=27 Score=33.73 Aligned_cols=146 Identities=23% Similarity=0.209 Sum_probs=77.2
Q ss_pred cCCccCCeEEEEECC-------CCCeeEEEECCC---CCccceEEEEEeCCCCCEEEEeecc-CCcEEEE-EeCCCCC--
Q 023927 22 SDGLYGRHLFVYSWP-------DGELKQTLDLGN---TGLIPLEIRFLHDPSKDIGFVGCAL-ASTMVRF-SKTQDGS-- 87 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~-------~~k~~~~i~Lg~---~G~gP~~v~f~f~P~g~~~YV~~eL-~stV~~~-~~~~~G~-- 87 (275)
+++.......+||.. +.+++-+|+.++ ....|-+++| +.... |++.+- .+...+| +-.++|+
T Consensus 38 VadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVf--N~~~~--F~vt~~g~~~~a~Fif~tEdGTis 113 (336)
T TIGR03118 38 VANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVF--NGSDT--FVVSGEGITGPSRFLFVTEDGTLS 113 (336)
T ss_pred EecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEE--eCCCc--eEEcCCCcccceeEEEEeCCceEE
Confidence 445678889999997 234554555422 1246888876 55433 544331 1222222 2235554
Q ss_pred -eeE--------EEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEeccee
Q 023927 88 -WNH--------EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLF 158 (275)
Q Consensus 88 -~~~--------~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~ 158 (275)
|.. ..++.++... .+.. -...+|.-..-+.|||++|...++|-|||- ..++. .+-|.|
T Consensus 114 aW~p~v~~t~~~~~~~~~d~s~-~gav-----YkGLAi~~~~~~~~LYaadF~~g~IDVFd~--~f~~~-----~~~g~F 180 (336)
T TIGR03118 114 GWAPALGTTRMTRAEIVVDASQ-QGNV-----YKGLAVGPTGGGDYLYAANFRQGRIDVFKG--SFRPP-----PLPGSF 180 (336)
T ss_pred eecCcCCcccccccEEEEccCC-Ccce-----eeeeEEeecCCCceEEEeccCCCceEEecC--ccccc-----cCCCCc
Confidence 321 1223333111 1100 112355555668999999999999999984 22211 222332
Q ss_pred ecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeC
Q 023927 159 RKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 159 ~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANs 207 (275)
. +|..|.|=. |.+++- -|.+|||+=+
T Consensus 181 ~-----------------DP~iPagyA----PFnIqn--ig~~lyVtYA 206 (336)
T TIGR03118 181 I-----------------DPALPAGYA----PFNVQN--LGGTLYVTYA 206 (336)
T ss_pred c-----------------CCCCCCCCC----CcceEE--ECCeEEEEEE
Confidence 1 223344554 777765 5788999854
No 184
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.56 E-value=11 Score=36.28 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=62.8
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
|....+|.+-|+...+.-....+.+..+.--. ++.+-+|..+=...+ .+|+++++...+|+.-.+ +- .|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac--v~Ln~~Gt~vATaSt-kGTLIRIFdt~~g~~l~E----~R----RG 223 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIAC--VALNLQGTLVATAST-KGTLIRIFDTEDGTLLQE----LR----RG 223 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeE--EEEcCCccEEEEecc-CcEEEEEEEcCCCcEeee----ee----cC
Confidence 44555666666665443111111111222223 334778876555544 488999988777754222 11 22
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
. ..+...-|.+|||..+|-||.- +++|.+|.+.+.
T Consensus 224 ~----d~A~iy~iaFSp~~s~LavsSd-KgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 V----DRADIYCIAFSPNSSWLAVSSD-KGTLHIFSLRDT 258 (346)
T ss_pred C----chheEEEEEeCCCccEEEEEcC-CCeEEEEEeecC
Confidence 2 1257789999999999988764 899999999774
No 185
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=87.45 E-value=2.3 Score=42.73 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=64.7
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccC
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILP 107 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~ 107 (275)
..+.||++...-.++-+.-...-+.|. +..||++++. +..-+++.|..|.-...-.++ ..+.++|...+
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~---~~~~P~~~~~-~aQs~dN~i~ifs~~~~~r~n-------kkK~feGh~va 432 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPC---LTLHPNGKWF-AAQSMDNYIAIFSTVPPFRLN-------KKKRFEGHSVA 432 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcc---eecCCCCCee-hhhccCceEEEEecccccccC-------Hhhhhcceecc
Confidence 479999998775444221111223454 3449999942 333355555555421100111 12345665544
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 108 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 108 ~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
+.+..+.+||||+|| +|--+.+.+-.||... -+|+.....
T Consensus 433 ---Gys~~v~fSpDG~~l-~SGdsdG~v~~wdwkt---~kl~~~lka 472 (503)
T KOG0282|consen 433 ---GYSCQVDFSPDGRTL-CSGDSDGKVNFWDWKT---TKLVSKLKA 472 (503)
T ss_pred ---CceeeEEEcCCCCeE-EeecCCccEEEeechh---hhhhhcccc
Confidence 888999999999999 6777889999999844 345444443
No 186
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=87.39 E-value=9.6 Score=35.15 Aligned_cols=92 Identities=11% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCC
Q 023927 109 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG 188 (275)
Q Consensus 109 ~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g 188 (275)
+...++.|...||.+.||+-+=....|-.++. +++++.+++..|. |
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~----~G~vlr~i~l~g~-------------------------~----- 65 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL----DGKVLRRIPLDGF-------------------------G----- 65 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET----T--EEEEEE-SS--------------------------S-----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC----CCCEEEEEeCCCC-------------------------C-----
Confidence 44568999999999999988888888866653 3678888988662 1
Q ss_pred CCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCeeec--cceeEecC
Q 023927 189 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN--PNFFVDFE 250 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~--~~f~vdf~ 250 (275)
-|-.++..-+|+++++.- + ...++.++++..+..+... +.+..++.
T Consensus 66 D~EgI~y~g~~~~vl~~E---------------r-~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEE---------------R-DQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp SEEEEEE-STTEEEEEET---------------T-TTEEEEEEE----TT--EEEEEEEE---S
T ss_pred CceeEEEECCCEEEEEEc---------------C-CCcEEEEEEeccccccchhhceEEecccc
Confidence 277888887777666542 1 3366666666666666433 34555554
No 187
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=87.23 E-value=1.6 Score=27.62 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=17.1
Q ss_pred CCceEEECCCCCEEEEEe
Q 023927 189 GPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVAN 206 (275)
.|+.++++|.+++||.++
T Consensus 10 ~~~~la~d~~~~~lYw~D 27 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTD 27 (43)
T ss_pred CcCEEEEeecCCEEEEEe
Confidence 499999999999999999
No 188
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=86.83 E-value=29 Score=34.90 Aligned_cols=129 Identities=9% Similarity=0.049 Sum_probs=73.3
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
......|.|..+++.+-.+.-...+-.-- ..+|||||- +|..+-. ..+..++.-..+. .+.. |.|..
T Consensus 323 ~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t--s~~fHpDgL-ifgtgt~-d~~vkiwdlks~~----~~a~-----Fpght 389 (506)
T KOG0289|consen 323 NDGTWAFSDISSGSQLTVVSDETSDVEYT--SAAFHPDGL-IFGTGTP-DGVVKIWDLKSQT----NVAK-----FPGHT 389 (506)
T ss_pred CCceEEEEEccCCcEEEEEeeccccceeE--EeeEcCCce-EEeccCC-CceEEEEEcCCcc----cccc-----CCCCC
Confidence 45667788888886544322211111111 245699997 4444333 4444444321111 1112 22221
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
+-..+|.+|-+|-||-+++- +++|..||+.. .+...++..- .++
T Consensus 390 -----~~vk~i~FsENGY~Lat~ad-d~~V~lwDLRK---l~n~kt~~l~--------------------------~~~- 433 (506)
T KOG0289|consen 390 -----GPVKAISFSENGYWLATAAD-DGSVKLWDLRK---LKNFKTIQLD--------------------------EKK- 433 (506)
T ss_pred -----CceeEEEeccCceEEEEEec-CCeEEEEEehh---hcccceeecc--------------------------ccc-
Confidence 34679999999999977765 66799999843 3333333320 122
Q ss_pred cCCCCceEEECCCCCEEEEEe
Q 023927 186 LRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+-..+.+++.|++|-.+-
T Consensus 434 ---~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 434 ---EVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred ---cceeEEEcCCCCeEEeec
Confidence 156799999999998885
No 189
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=86.81 E-value=17 Score=34.63 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=75.8
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCC-ccce-EEEEEeCCCCCEEEEe-eccCCcEEEEEeCCCCCeeEEEEEEec
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTG-LIPL-EIRFLHDPSKDIGFVG-CALASTMVRFSKTQDGSWNHEVAISVK 97 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G-~gP~-~v~f~f~P~g~~~YV~-~eL~stV~~~~~~~~G~~~~~~vi~i~ 97 (275)
++.|.-..+|.+|+...+..+ .+..++ ..+. +++| +|+..--|++ +.-+.+|-++.- ..-|....-
T Consensus 120 ivSGSrDkTiklwnt~g~ck~---t~~~~~~~~WVscvrf--sP~~~~p~Ivs~s~DktvKvWnl------~~~~l~~~~ 188 (315)
T KOG0279|consen 120 IVSGSRDKTIKLWNTLGVCKY---TIHEDSHREWVSCVRF--SPNESNPIIVSASWDKTVKVWNL------RNCQLRTTF 188 (315)
T ss_pred eecCCCcceeeeeeecccEEE---EEecCCCcCcEEEEEE--cCCCCCcEEEEccCCceEEEEcc------CCcchhhcc
Confidence 455667778888887654332 333222 3444 5666 9997444444 444444444432 111222211
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCC
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD 177 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~ 177 (275)
+ |.. ...+.+.+||||- |-+|---++.+--||++...+..- .++
T Consensus 189 ~----gh~-----~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lys-----l~a--------------------- 232 (315)
T KOG0279|consen 189 I----GHS-----GYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYS-----LEA--------------------- 232 (315)
T ss_pred c----ccc-----ccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEe-----ccC---------------------
Confidence 1 111 3568999999999 668866789999999966443211 110
Q ss_pred CccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 178 VPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 178 ~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
... =+.++++|.--+|-+|-
T Consensus 233 -----~~~----v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 233 -----FDI----VNSLCFSPNRYWLCAAT 252 (315)
T ss_pred -----CCe----EeeEEecCCceeEeecc
Confidence 122 56899999988887776
No 190
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=86.77 E-value=13 Score=37.88 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=76.3
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEee-ccCCcEEEEEeCCCCCeeEEEEEEecCcccccccc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGC-ALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~-eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
..++++++..+..-...++ .+|.| -|.++|.++..=|+. -+..++..+... | . +....|+.-.
T Consensus 255 snLyl~~~~e~~i~V~~~~----~~pVh-df~W~p~S~~F~vi~g~~pa~~s~~~lr--~----N-l~~~~Pe~~r---- 318 (561)
T COG5354 255 SNLYLLRITERSIPVEKDL----KDPVH-DFTWEPLSSRFAVISGYMPASVSVFDLR--G----N-LRFYFPEQKR---- 318 (561)
T ss_pred ceEEEEeecccccceeccc----cccce-eeeecccCCceeEEecccccceeecccc--c----c-eEEecCCccc----
Confidence 5677888774322111122 37887 588899987655554 677777776532 2 2 2223333212
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCC--CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCc
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH 184 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg--~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~ 184 (275)
..|.+||.+|++-++-.+ .++|-+|+. +++.+.++.+.. .
T Consensus 319 -------NT~~fsp~~r~il~agF~nl~gni~i~~~--~~rf~~~~~~~~-----------------------------~ 360 (561)
T COG5354 319 -------NTIFFSPHERYILFAGFDNLQGNIEIFDP--AGRFKVAGAFNG-----------------------------L 360 (561)
T ss_pred -------ccccccCcccEEEEecCCccccceEEecc--CCceEEEEEeec-----------------------------C
Confidence 478899999999998885 699999996 345555544321 1
Q ss_pred ccCCCCceEEECCCCCEEEEEe
Q 023927 185 RLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 185 ~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
. -+-.-.||||.+++++-
T Consensus 361 n----~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 361 N----TSYCDWSPDGQFYDTDT 378 (561)
T ss_pred C----ceEeeccCCceEEEecC
Confidence 1 33456799999999976
No 191
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.75 E-value=16 Score=35.40 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=69.2
Q ss_pred CcCCCccccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEE
Q 023927 12 FTKGFNLQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHE 91 (275)
Q Consensus 12 ~~~g~~~~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~ 91 (275)
|...++.++|..+-...+|.+|+..+=+++.+++- ..+. --++.. ||.++.|-.++. ..+.+...--.|
T Consensus 91 F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~-Vt~lsi--HPS~KLALsVg~--D~~lr~WNLV~G----- 159 (362)
T KOG0294|consen 91 FYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQ-VTDLSI--HPSGKLALSVGG--DQVLRTWNLVRG----- 159 (362)
T ss_pred ecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccc-cceeEe--cCCCceEEEEcC--CceeeeehhhcC-----
Confidence 44455556887878889999999988766666653 3344 455655 999998877622 233333211111
Q ss_pred EEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 92 VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 92 ~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+..-+.+ +.+.++-+..+|.|-+.||+-| |.|-+|.+.+
T Consensus 160 r~a~v~~----------L~~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d~ 198 (362)
T KOG0294|consen 160 RVAFVLN----------LKNKATLVSWSPQGDHFVVSGR--NKIDIYQLDN 198 (362)
T ss_pred ccceeec----------cCCcceeeEEcCCCCEEEEEec--cEEEEEeccc
Confidence 1111111 2355667999999999999877 6788888844
No 192
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.67 E-value=1.6 Score=42.80 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=79.5
Q ss_pred ccCCCcCCcCCCcccc--c-cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEE
Q 023927 5 SWGAPLAFTKGFNLQH--V-SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFS 81 (275)
Q Consensus 5 ~~~~p~~~~~g~~~~~--~-~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~ 81 (275)
+||.+....--|||-+ + +.+-....|.+||+...+.++.+.++. -+-.|.| +| ..+.||++--+.++..|.
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~Isw--nP-eafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICW--NP-EAFNFVAANEDHNLYTYD 257 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---cccceec--Cc-cccceeeccccccceehh
Confidence 5999988777777733 3 445578899999999998888766654 3444555 99 778888877777776665
Q ss_pred eCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 82 KTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 82 ~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
... + .-+..-+.+. .+...|+..||-|+- +||--=+-+|++|.++.
T Consensus 258 mR~---l------~~p~~v~~dh-----vsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 258 MRN---L------SRPLNVHKDH-----VSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hhh---h------cccchhhccc-----ceeEEEeccCCCcch-hccccccceEEEeecCC
Confidence 310 1 1111111121 145578999999995 47777789999999855
No 193
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.40 E-value=9.2 Score=38.17 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=39.5
Q ss_pred CCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC-ceEEECCCCC
Q 023927 122 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP-QMIQLSLDGK 200 (275)
Q Consensus 122 grfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P-r~~~LSpDGk 200 (275)
|+.|.++. .+.|..||++. .+++.+|.+. | +.+..|+||.
T Consensus 117 G~LL~~~~--~~~i~~yDw~~---~~~i~~i~v~----------------------------------~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 117 GNLLGVKS--SDFICFYDWET---GKLIRRIDVS----------------------------------AVKYVIWSDDGE 157 (443)
T ss_dssp SSSEEEEE--TTEEEEE-TTT-----EEEEESS-----------------------------------E-EEEEE-TTSS
T ss_pred CcEEEEEC--CCCEEEEEhhH---cceeeEEecC----------------------------------CCcEEEEECCCC
Confidence 88888773 45799999843 6787777541 4 7999999999
Q ss_pred EEEEEeCCCCCcccccccccccCCcEEEEEEee
Q 023927 201 RLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN 233 (275)
Q Consensus 201 ~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d 233 (275)
++-.+. +++..+++++.+
T Consensus 158 ~val~t---------------~~~i~il~~~~~ 175 (443)
T PF04053_consen 158 LVALVT---------------KDSIYILKYNLE 175 (443)
T ss_dssp EEEEE----------------S-SEEEEEE-HH
T ss_pred EEEEEe---------------CCeEEEEEecch
Confidence 999887 467888888776
No 194
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=86.15 E-value=12 Score=39.10 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=27.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+..+-|++|+||.||-|++ ..+.|.+|++..
T Consensus 476 ~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAIS-TRGQIFVYNLET 506 (691)
T ss_pred CcceeEEEcCCCCEEEEEe-ccceEEEEEccc
Confidence 5678999999999999999 788999999855
No 195
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=86.04 E-value=7.5 Score=39.69 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=66.3
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
+...|++||+..+..+-...- ..-+.-++|.| +|....++|+-.++-.|..|.-.. -.....++..
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~-~HsAP~~gicf--spsne~l~vsVG~Dkki~~yD~~s---~~s~~~l~y~-------- 250 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASE-AHSAPCRGICF--SPSNEALLVSVGYDKKINIYDIRS---QASTDRLTYS-------- 250 (673)
T ss_pred cCCeEEEEeccCCCcccchhh-hccCCcCccee--cCCccceEEEecccceEEEeeccc---ccccceeeec--------
Confidence 667899999988765443221 11223356666 999999999999998888886421 1111222221
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 146 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~ 146 (275)
.--+.++++++|-+|-+-|- .|.|.+||+.....|
T Consensus 251 -----~Plstvaf~~~G~~L~aG~s-~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 251 -----HPLSTVAFSECGTYLCAGNS-KGELIAYDMRSTKAP 285 (673)
T ss_pred -----CCcceeeecCCceEEEeecC-CceEEEEecccCCCC
Confidence 11258889999999965554 689999999664444
No 196
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=85.80 E-value=29 Score=37.61 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=57.3
Q ss_pred ccCCccCCeEEEEECCCC---CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEec
Q 023927 21 VSDGLYGRHLFVYSWPDG---ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVK 97 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~---k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~ 97 (275)
+..+-..+.|++|.+... .++.++.++ -|+++ |+-+|+++-.+.+ +-.|-++..+ | ...+.+.
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp-----~r~~~--v~g~g~~iaagsd-D~~vK~~~~~-D--~s~~~~l--- 134 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLP-----IRDLA--VSGSGKMIAAGSD-DTAVKLLNLD-D--SSQEKVL--- 134 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeecc-----ceEEE--EecCCcEEEeecC-ceeEEEEecc-c--cchheee---
Confidence 444556788888888875 366666663 24544 4888886544422 1122222221 1 1111111
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.|. .+....+-++|.|.||=|| -..|.|.+|++++
T Consensus 135 ----rgh-----~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 135 ----RGH-----DAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQD 169 (933)
T ss_pred ----ccc-----CCceeeeeEcCCCCEEEEE-ecCceEEEEEccc
Confidence 111 1345688899999999555 5589999999976
No 197
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=85.76 E-value=18 Score=38.95 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=78.2
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEE-------EEeeccCCcEEEEEeCCCCCeeEEEEE
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIG-------FVGCALASTMVRFSKTQDGSWNHEVAI 94 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~-------YV~~eL~stV~~~~~~~~G~~~~~~vi 94 (275)
.+....++|+-.|+..+|+++..++..+ +|. . -|-|+.|.+ |++ =-.+.++++...-.| .+++
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~--~~v--~-~~~p~~K~aqlt~e~tflG-ls~n~lfriDpR~~~----~k~v 567 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDD--IPV--V-DIAPDSKFAQLTNEQTFLG-LSDNSLFRIDPRLSG----NKLV 567 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCC--cce--e-EecccccccccCCCceEEE-ECCCceEEeccCCCC----Ccee
Confidence 3334678999999999999999999654 331 1 235766655 433 124556666543222 1122
Q ss_pred EecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCC
Q 023927 95 SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPY 174 (275)
Q Consensus 95 ~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~ 174 (275)
....+.+.. .+.=+.++-+.+|...-.|+ .|.|+-|+-. + +. +....-|
T Consensus 568 ~~~~k~Y~~------~~~Fs~~aTt~~G~iavgs~--~G~IRLyd~~--g--~~-AKT~lp~------------------ 616 (794)
T PF08553_consen 568 DSQSKQYSS------KNNFSCFATTEDGYIAVGSN--KGDIRLYDRL--G--KR-AKTALPG------------------ 616 (794)
T ss_pred ecccccccc------CCCceEEEecCCceEEEEeC--CCcEEeeccc--c--hh-hhhcCCC------------------
Confidence 111122211 12335678899999877775 4679999831 1 11 1111100
Q ss_pred CCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 175 QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 175 ~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
-|.. =.++.+|.|||||++|+
T Consensus 617 -------lG~p----I~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 617 -------LGDP----IIGIDVTADGKWILATC 637 (794)
T ss_pred -------CCCC----eeEEEecCCCcEEEEee
Confidence 1443 45789999999999999
No 198
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.58 E-value=42 Score=33.61 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=87.7
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeecc------------CCcEEEEEeCCCCCeeE----
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCAL------------ASTMVRFSKTQDGSWNH---- 90 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL------------~stV~~~~~~~~G~~~~---- 90 (275)
+..+..+|+. ++.+...+++. +..-.|=-+..-|+|+.+.++.+- ...|+.+ +.+|+...
T Consensus 166 ~~~~~e~D~~-G~v~~~~~l~~-~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev--d~tG~vv~~wd~ 241 (477)
T PF05935_consen 166 GNRLYEIDLL-GKVIWEYDLPG-GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV--DPTGEVVWEWDF 241 (477)
T ss_dssp BTEEEEE-TT---EEEEEE--T-TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE---TTS-EEEEEEG
T ss_pred CCceEEEcCC-CCEEEeeecCC-cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE--CCCCCEEEEEeh
Confidence 3777788875 66777777753 221122235568999999999851 1122222 24453211
Q ss_pred EEEEEecCcc-----------------ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEE
Q 023927 91 EVAISVKSLK-----------------VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW 153 (275)
Q Consensus 91 ~~vi~i~~~~-----------------~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~ 153 (275)
.+.+ .+.. ...| -+..+|...+.+.-|.+|.|..+.|..++-. ++++.-.+.
T Consensus 242 ~d~l--d~~~~~~~~~~~~~~~~~~~~~~DW------~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~---t~~i~Wilg 310 (477)
T PF05935_consen 242 FDHL--DPYRDTVLKPYPYGDISGSGGGRDW------LHINSIDYDPSDDSIIVSSRHQSAVIKIDYR---TGKIKWILG 310 (477)
T ss_dssp GGTS---TT--TTGGT--SSSSS-SSTTSBS--------EEEEEEETTTTEEEEEETTT-EEEEEE-T---TS-EEEEES
T ss_pred HHhC--CcccccccccccccccccCCCCCCc------cccCccEEeCCCCeEEEEcCcceEEEEEECC---CCcEEEEeC
Confidence 1111 0111 0123 4788999999778899999999999888842 345532222
Q ss_pred ecceeecCCceeeecCCCCCCCCCCc---------cccCcccCCCCceEEECCCC---CEEEEEeCCCCCcccccccccc
Q 023927 154 VGGLFRKGSPVVAVTDDGQPYQSDVP---------EVQGHRLRGGPQMIQLSLDG---KRLYVTNSLFSAWDCQFYPELK 221 (275)
Q Consensus 154 ~gG~~~~~~~~~v~~~~~~~~~~~~~---------~~~G~~~~g~Pr~~~LSpDG---k~LyVANsl~~~wd~Q~yp~~~ 221 (275)
..+.++... ++ ...++. ...+-....+.....+.|+| ..|.--|.....-....|+.+.
T Consensus 311 ~~~~w~~~~-----~~----~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~ 381 (477)
T PF05935_consen 311 PPGGWNGTY-----QD----YLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPK 381 (477)
T ss_dssp -STT--TTT-----GG----GB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-
T ss_pred CCCCCCccc-----ch----heeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccc
Confidence 212121110 00 000010 00122223356688999999 8888888666555544444443
Q ss_pred cCCcEEEEEEeeCCCCCeeeccce
Q 023927 222 EKGSHMLQIDVNSEKGGMAINPNF 245 (275)
Q Consensus 222 ~~~~~~~~~d~d~~~G~l~~~~~f 245 (275)
.+.+..+++.+|..++..+....|
T Consensus 382 ~~~Sr~v~Y~Ide~~~T~~~vw~y 405 (477)
T PF05935_consen 382 DNYSRAVEYRIDENKMTVEQVWEY 405 (477)
T ss_dssp ----EEEEEEEETTTTEEEEEEEE
T ss_pred cccceEEEEEecCCCceEEEEEEe
Confidence 345667777778776655444443
No 199
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=85.42 E-value=12 Score=39.09 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=61.9
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
.+.+|+|++.-++.-..=.|.++.++. ....+.+-..+... -.++.|.++-|+..|++..-.+.++-.
T Consensus 388 ~aiSPdg~~Ia~st~~~~~iy~L~~~~--~vk~~~v~~~~~~~----------~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVSRTKIYRLQPDP--NVKVINVDDVPLAL----------LDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred eccCCCCCEEEEeeccceEEEEeccCc--ceeEEEeccchhhh----------ccceeeEEEecCceEEEEecccceeEE
Confidence 455899998888866666666666532 23222222222111 245789999888776666555666666
Q ss_pred EEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 138 YNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 138 fdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
|+...+..-++.+.. +.+. +++ =..++.||||.|+-|++
T Consensus 456 ~el~~ps~kel~~~~-----------------------~~~~-~~~------I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 456 FELETPSFKELKSIQ-----------------------SQAK-CPS------ISRLVVSSDGNYIAAIS 494 (691)
T ss_pred EEecCcchhhhhccc-----------------------cccC-CCc------ceeEEEcCCCCEEEEEe
Confidence 666443222232222 2110 011 23689999999999998
No 200
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=85.42 E-value=17 Score=35.31 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=70.3
Q ss_pred ccccCCccCCeEEEEECCCC---CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEE
Q 023927 19 QHVSDGLYGRHLFVYSWPDG---ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAIS 95 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~---k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~ 95 (275)
..+.+...++++++|...-. +++|+..=.......+.+++.++-+-..-|++ ..|.+....+|.
T Consensus 55 ~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la-------------~~G~~GvIrVid 121 (385)
T KOG1034|consen 55 PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA-------------AGGYLGVIRVID 121 (385)
T ss_pred CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE-------------eecceeEEEEEe
Confidence 44555667899999988764 45554332222334556666555553333333 234555556665
Q ss_pred ecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 96 VKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 96 i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+......+. +-..|....+|...|+.--|-+|+--+-+|+.|+|+.
T Consensus 122 ~~~~~~~~~-~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 122 VVSGQCSKN-YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred cchhhhccc-eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 554433321 2225678899999999999999999999999999965
No 201
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=85.42 E-value=23 Score=37.94 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=80.2
Q ss_pred ccCCccCCeEEEEECCCC-CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcE-EEEEe-CCCCCeeEEEEEEec
Q 023927 21 VSDGLYGRHLFVYSWPDG-ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTM-VRFSK-TQDGSWNHEVAISVK 97 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~-k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV-~~~~~-~~~G~~~~~~vi~i~ 97 (275)
|+.+--+.-|||||+... -++|+++= .-+.--.|.|+- .++++--++|.-+-.| ++..+ ..+|.+..+.+-++.
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~--HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ 595 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDG--HSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS 595 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcc--cccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence 344556778999999876 45555542 233444556633 3444455555543333 33332 233444333322221
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCC
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD 177 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~ 177 (275)
. ...+||.+.|.-|++-..|- +..|++|+|.. +|++....
T Consensus 596 ------k------tTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~s---gKq~k~FK------------------------ 635 (1080)
T KOG1408|consen 596 ------K------TTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIES---GKQVKSFK------------------------ 635 (1080)
T ss_pred ------c------ceEEEeeeCCCcceEEEEec-ccceEEEeccc---cceeeeec------------------------
Confidence 1 35589999999998877776 45799999965 33332221
Q ss_pred CccccCcccC-CCCceEEECCCCCEEEEEe
Q 023927 178 VPEVQGHRLR-GGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 178 ~~~~~G~~~~-g~Pr~~~LSpDGk~LyVAN 206 (275)
|.+=. |.|=-+.|+|.|-||-...
T Consensus 636 -----gs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 636 -----GSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred -----ccccCCCceEEEEECCCccEEEEee
Confidence 22222 4588899999997766655
No 202
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=85.37 E-value=14 Score=38.61 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=89.3
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCC-CeeEEEEE----E
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAI----S 95 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G-~~~~~~vi----~ 95 (275)
|+.|.....|.+|.+.+++-+.++.+.. .-+.|+| +|.++..-+..+.+..++++.. .=| ++...++- +
T Consensus 415 lasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw--~P~~~~~vLAvA~~~~~~ivnp-~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 415 LASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAW--NPLSDLCVLAVAVGECVLIVNP-IFGDRLEVGPTKELLAS 488 (733)
T ss_pred eeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEe--cCCCCceeEEEEecCceEEeCc-cccchhhhcchhhhhhc
Confidence 5667788899999999999888888854 5666655 9988888777777777555532 111 11111111 1
Q ss_pred ecCc-----cccccc-------------cCCCCCceeEEEEcCCCCEEEEEeC--CCCcEEEEEecCCCCCeEEEEEEec
Q 023927 96 VKSL-----KVQNWI-------------LPEMPGLITDFLISLDDRFLYFSNW--LHGDIRQYNIEDPKNPVLTGQIWVG 155 (275)
Q Consensus 96 i~~~-----~~~g~~-------------~~~~~~~~adI~iSpDgrfLYVSNr--g~~sIavfdI~~~~~~~lv~~v~~g 155 (275)
.+++ .+.-|. ...++.....|--+.+|+||=+.+- ++-+|.+++++..... .+.
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-----~PF- 562 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-----SPF- 562 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-----Cch-
Confidence 1110 000111 0124566677778888988877766 4456666666432100 110
Q ss_pred ceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 156 GLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 156 G~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+.-.|.|+...+-|.--+||||.
T Consensus 563 ----------------------------~kskG~vq~v~FHPs~p~lfVaT 585 (733)
T KOG0650|consen 563 ----------------------------RKSKGLVQRVKFHPSKPYLFVAT 585 (733)
T ss_pred ----------------------------hhcCCceeEEEecCCCceEEEEe
Confidence 11223499999999999999998
No 203
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.70 E-value=33 Score=33.82 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=79.6
Q ss_pred cccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC---CCe----eEEE
Q 023927 20 HVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD---GSW----NHEV 92 (275)
Q Consensus 20 ~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~---G~~----~~~~ 92 (275)
.+......+.|..|+++++--+.++.= .+-+.++ +..+.||. ++.+|-++.+|.++-.... -.+ ...+
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~t~~~---h~ewvr~-v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVKTFPG---HSEWVRM-VRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred eeeecccccceeEEecccceeEEeccC---chHhEEE-EEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 444445788999999999855444431 1235543 33466665 7889999999888754211 111 1123
Q ss_pred EEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCC
Q 023927 93 AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQ 172 (275)
Q Consensus 93 vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~ 172 (275)
.+...|+..--... .+.+++= .|.+|....| +.+|..|+|+.+ +.+= .++|.
T Consensus 282 ci~wap~~~~~~i~---~at~~~~----~~~~l~s~Sr-DktIk~wdv~tg---~cL~--tL~gh--------------- 333 (406)
T KOG0295|consen 282 CIAWAPESSYPSIS---EATGSTN----GGQVLGSGSR-DKTIKIWDVSTG---MCLF--TLVGH--------------- 333 (406)
T ss_pred EEEecccccCcchh---hccCCCC----CccEEEeecc-cceEEEEeccCC---eEEE--EEecc---------------
Confidence 33333332110000 0111110 5667766665 789999999653 3321 22221
Q ss_pred CCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 173 PYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 173 ~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+.+ -|.++++|-||||+-+-
T Consensus 334 ----------dnw----Vr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 334 ----------DNW----VRGVAFSPGGKYILSCA 353 (406)
T ss_pred ----------cce----eeeeEEcCCCeEEEEEe
Confidence 333 88999999999999875
No 204
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=84.66 E-value=6.2 Score=40.69 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=46.5
Q ss_pred EEEeCCCCCEEEEeecc--CCcEEEEEeCC-CCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCC--
Q 023927 57 RFLHDPSKDIGFVGCAL--ASTMVRFSKTQ-DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL-- 131 (275)
Q Consensus 57 ~f~f~P~g~~~YV~~eL--~stV~~~~~~~-~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg-- 131 (275)
+|++.|.|...-|+... .++|..+.... .++|.. +..++. .++..+-.||.|||+-|++-.
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l--Vk~~dk------------~~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL--VKELDK------------KFANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhh--hhhhcc------------cccceEEEcCCCcEEEEEEeccc
Confidence 47889999877666543 45555554432 223322 222221 356789999999999999886
Q ss_pred CCcEEEEEec
Q 023927 132 HGDIRQYNIE 141 (275)
Q Consensus 132 ~~sIavfdI~ 141 (275)
.+.+.-||.+
T Consensus 516 ~g~l~F~D~~ 525 (698)
T KOG2314|consen 516 RGDLEFYDTD 525 (698)
T ss_pred ccceEEEecc
Confidence 6888888874
No 205
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.21 E-value=37 Score=31.89 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=16.0
Q ss_pred CCCEEEEEeCCCCcEEEEEecC
Q 023927 121 DDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 121 DgrfLYVSNrg~~sIavfdI~~ 142 (275)
++.++|++++ .+.+..||.++
T Consensus 240 ~~~~vy~~~~-~g~l~a~d~~t 260 (377)
T TIGR03300 240 DGGQVYAVSY-QGRVAALDLRS 260 (377)
T ss_pred ECCEEEEEEc-CCEEEEEECCC
Confidence 4678999987 46788888743
No 206
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=84.18 E-value=21 Score=36.75 Aligned_cols=96 Identities=15% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCccCCeEEEEECCCCCeeE----EEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecC
Q 023927 23 DGLYGRHLFVYSWPDGELKQ----TLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKS 98 (275)
Q Consensus 23 ~g~~~d~I~v~d~~~~k~~~----~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~ 98 (275)
+|.-.-+-.+|+....|+.. +++|+. .+.. ++++|+.+.+-++||= ++|+.|.... + .+ +.+..
T Consensus 231 ~g~~~~d~ciYE~~r~klqrvsvtsipL~s---~v~~--ca~sp~E~kLvlGC~D-gSiiLyD~~~-~-~t--~~~ka-- 298 (545)
T PF11768_consen 231 KGEPSADSCIYECSRNKLQRVSVTSIPLPS---QVIC--CARSPSEDKLVLGCED-GSIILYDTTR-G-VT--LLAKA-- 298 (545)
T ss_pred CCCceeEEEEEEeecCceeEEEEEEEecCC---cceE--EecCcccceEEEEecC-CeEEEEEcCC-C-ee--eeeee--
Confidence 34455566788887665432 455533 5554 5569999999999995 7888886421 1 11 11111
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+-.|+.|..+|||-.+-|+|. .|.|-.||+.-
T Consensus 299 -----------~~~P~~iaWHp~gai~~V~s~-qGelQ~FD~AL 330 (545)
T PF11768_consen 299 -----------EFIPTLIAWHPDGAIFVVGSE-QGELQCFDMAL 330 (545)
T ss_pred -----------cccceEEEEcCCCcEEEEEcC-CceEEEEEeec
Confidence 025689999999999888877 78999999944
No 207
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=84.03 E-value=13 Score=37.43 Aligned_cols=98 Identities=8% Similarity=0.035 Sum_probs=68.0
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..|-....|.|||++++..+..++- .++|.. ...|+-||-|+-+.|+=++ |..|.-. ++..-+++.++...
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpg---ht~~vk-~i~FsENGY~Lat~add~~-V~lwDLR---Kl~n~kt~~l~~~~- 433 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPG---HTGPVK-AISFSENGYWLATAADDGS-VKLWDLR---KLKNFKTIQLDEKK- 433 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCC---CCCcee-EEEeccCceEEEEEecCCe-EEEEEeh---hhcccceeeccccc-
Confidence 4466677899999999876655543 235553 2345999999988888655 6666532 23445666665332
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
...++.+.+.|+||-++ .++|.+|...
T Consensus 434 ----------~v~s~~fD~SGt~L~~~---g~~l~Vy~~~ 460 (506)
T KOG0289|consen 434 ----------EVNSLSFDQSGTYLGIA---GSDLQVYICK 460 (506)
T ss_pred ----------cceeEEEcCCCCeEEee---cceeEEEEEe
Confidence 23688899999999888 7789999884
No 208
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=83.90 E-value=9.6 Score=37.73 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=41.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCce
Q 023927 113 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM 192 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~ 192 (275)
...|+++||| +||||--..+..+.=.-.....++.+ ++...|+++-|.+ ..+ ....--|.+ .|+-
T Consensus 179 g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~-r~~~a~~~~~d~p-------~~~---~~i~s~G~R---N~qG 243 (399)
T COG2133 179 GGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVL-RIDRAGIIPADNP-------FPN---SEIWSYGHR---NPQG 243 (399)
T ss_pred cccEEECCCC-cEEEEeCCCCCcccccCcccccccee-eeccCcccccCCC-------CCC---cceEEeccC---Cccc
Confidence 4699999999 89999764433331110001112221 2222233222111 100 001112444 6999
Q ss_pred EEECCCCCEEEEEe
Q 023927 193 IQLSLDGKRLYVTN 206 (275)
Q Consensus 193 ~~LSpDGk~LyVAN 206 (275)
|++.|-...||++.
T Consensus 244 l~w~P~tg~Lw~~e 257 (399)
T COG2133 244 LAWHPVTGALWTTE 257 (399)
T ss_pred eeecCCCCcEEEEe
Confidence 99999977799887
No 209
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.71 E-value=8.7 Score=38.20 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=28.7
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 108 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 108 ~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
++++..+.+-+|+||+.|-.|.| +|.+.++|...
T Consensus 339 ~~gg~vtSl~ls~~g~~lLsssR-Ddtl~viDlRt 372 (459)
T KOG0288|consen 339 PLGGRVTSLDLSMDGLELLSSSR-DDTLKVIDLRT 372 (459)
T ss_pred ecCcceeeEeeccCCeEEeeecC-CCceeeeeccc
Confidence 36678899999999999988866 78999999844
No 210
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=83.69 E-value=45 Score=32.54 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=82.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
-...|..||+.++..++++.+.. |.--+ -|||..+..+|.+-+..+-.++.... .+.+++|..-.+.
T Consensus 85 ~D~si~lwDl~~gs~l~rirf~s----pv~~~-q~hp~k~n~~va~~~~~sp~vi~~s~-------~~h~~Lp~d~d~d- 151 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIRFDS----PVWGA-QWHPRKRNKCVATIMEESPVVIDFSD-------PKHSVLPKDDDGD- 151 (405)
T ss_pred CCceeEEEeccCCCceeEEEccC----cccee-eeccccCCeEEEEEecCCcEEEEecC-------CceeeccCCCccc-
Confidence 45789999999999999998853 33222 35999999999988766655554321 1222333322221
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcc
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR 185 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~ 185 (275)
+. ..++--...+-|+++|+-|. .|.+-+|+. .+.+.++.... ++++ .
T Consensus 152 ln---~sas~~~fdr~g~yIitGts-KGkllv~~a---~t~e~vas~ri----------ts~~----------------~ 198 (405)
T KOG1273|consen 152 LN---SSASHGVFDRRGKYIITGTS-KGKLLVYDA---ETLECVASFRI----------TSVQ----------------A 198 (405)
T ss_pred cc---cccccccccCCCCEEEEecC-cceEEEEec---chheeeeeeee----------chhe----------------e
Confidence 11 23344467888999998876 678999986 34666654432 0001 0
Q ss_pred cCCCCceEEECCCCCEEEEEe
Q 023927 186 LRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVAN 206 (275)
=+.+-++..|++|+.-.
T Consensus 199 ----IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 199 ----IKQIIVSRKGRFLIINT 215 (405)
T ss_pred ----eeEEEEeccCcEEEEec
Confidence 34678888998877655
No 211
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.68 E-value=42 Score=35.39 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=62.5
Q ss_pred ccCCccCCeEEEEECCCC--CeeE------EEECCCCCccceEEE--EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeE
Q 023927 21 VSDGLYGRHLFVYSWPDG--ELKQ------TLDLGNTGLIPLEIR--FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNH 90 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~--k~~~------~i~Lg~~G~gP~~v~--f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~ 90 (275)
++.|-.+.+|.+||++++ +++. +..|+ +||..-. |+-+++| ..+|++....-+.++.. -+.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp-----rt~ 203 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG---SGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP-----RTC 203 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCC---CCCccceeeeecCCcc-eEEEecCcccceEEecc-----ccc
Confidence 344668899999999987 3333 33333 3555322 3336777 67777776444444432 112
Q ss_pred EEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 91 EVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 91 ~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
++++.+- |.. ...-+++++.||+.+ +|--.+++|.+|++..
T Consensus 204 ~kimkLr-----GHT-----dNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 204 KKIMKLR-----GHT-----DNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQ 244 (735)
T ss_pred cceeeee-----ccc-----cceEEEEEcCCCCeE-eecCCCceEEeeeccc
Confidence 2333332 110 233589999999988 6667789999999954
No 212
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=83.33 E-value=2.7 Score=44.02 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=44.4
Q ss_pred CCceeEEEEcCCCCEEEEEeCC----CCcEEEEEecCC-CCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCc
Q 023927 110 PGLITDFLISLDDRFLYFSNWL----HGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH 184 (275)
Q Consensus 110 ~~~~adI~iSpDgrfLYVSNrg----~~sIavfdI~~~-~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~ 184 (275)
+...+++.+||+|++|--||+. |-.|..|.+..- ....|.+.--+
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT------------------------------ 574 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT------------------------------ 574 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE------------------------------
Confidence 4467899999999999999994 677888887552 11223222111
Q ss_pred ccCCCCceEEECCCCCEEEEEe
Q 023927 185 RLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 185 ~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
=-.+++|||||||+.+.
T Consensus 575 -----VT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 575 -----VTRLAFSPDGRYLLSVS 591 (764)
T ss_pred -----EEEEEECCCCcEEEEee
Confidence 22589999999999987
No 213
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=83.28 E-value=4.7 Score=38.64 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=63.8
Q ss_pred ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-CCCeeEEEEEEec
Q 023927 19 QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-DGSWNHEVAISVK 97 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-~G~~~~~~vi~i~ 97 (275)
+-+-.|....++.+||..+...++++.- . -++. +|.|..++...+.+ ..++.|-++.... ++. -+.
T Consensus 146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~~---k-yqlt-Av~f~d~s~qv~sg-gIdn~ikvWd~r~~d~~-------~~l 212 (338)
T KOG0265|consen 146 QLVCSGSDDGTLKLWDIRKKEAIKTFEN---K-YQLT-AVGFKDTSDQVISG-GIDNDIKVWDLRKNDGL-------YTL 212 (338)
T ss_pred eEEEecCCCceEEEEeecccchhhcccc---c-eeEE-EEEecccccceeec-cccCceeeeccccCcce-------EEe
Confidence 3345577788999999987765543311 1 1222 46678888776654 4455555554321 111 111
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.|.. ...+.|.+|++|.|| .||-++++|.+||+..
T Consensus 213 ----sGh~-----DtIt~lsls~~gs~l-lsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 213 ----SGHA-----DTITGLSLSRYGSFL-LSNSMDNTVRVWDVRP 247 (338)
T ss_pred ----eccc-----CceeeEEeccCCCcc-ccccccceEEEEEecc
Confidence 1211 345789999999999 7999999999999944
No 214
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.92 E-value=56 Score=32.99 Aligned_cols=63 Identities=24% Similarity=0.225 Sum_probs=46.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC-CCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 112 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~-~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
-.+.+++.|--. |.+|--+.+.|+.|.|.+. ....++..++.-| .=
T Consensus 382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~G--------------------------------fV 428 (479)
T KOG0299|consen 382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVG--------------------------------FV 428 (479)
T ss_pred ceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeeccccc--------------------------------EE
Confidence 356777777555 7788888999999999774 2345555555433 35
Q ss_pred ceEEECCCCCEEEEEeC
Q 023927 191 QMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 191 r~~~LSpDGk~LyVANs 207 (275)
+.++++++|++++|+-.
T Consensus 429 Nsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEEEccCCCEEEEecc
Confidence 67999999999999974
No 215
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=82.78 E-value=13 Score=36.72 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=62.2
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..|.....|-|||+.++++..++. ..-..-|++++ ++--.|+|...| +..|-.+. ++..++|. .+
T Consensus 167 ~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vav--S~rHpYlFs~ge-dk~VKCwD------Le~nkvIR----~Y 231 (460)
T KOG0285|consen 167 ATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAV--SKRHPYLFSAGE-DKQVKCWD------LEYNKVIR----HY 231 (460)
T ss_pred EecCCCceeEEEEcccCeEEEeec--chhheeeeeee--cccCceEEEecC-CCeeEEEe------chhhhhHH----Hh
Confidence 456677889999999999865443 22346788776 998888887654 23333222 22223332 11
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
-|.- .....+.++|-.+.|. ++-.+-.+++|||..
T Consensus 232 hGHl-----S~V~~L~lhPTldvl~-t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 232 HGHL-----SGVYCLDLHPTLDVLV-TGGRDSTIRVWDIRT 266 (460)
T ss_pred cccc-----ceeEEEeccccceeEE-ecCCcceEEEeeecc
Confidence 2221 2345677888888665 444477999999955
No 216
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=82.64 E-value=27 Score=33.04 Aligned_cols=136 Identities=15% Similarity=0.049 Sum_probs=65.5
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceE--EEEEe-CCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLE--IRFLH-DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~--v~f~f-~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
.+..-.|.++|..+++....+.-..+ ++.. -.+.| .+++...+...|-++--.++.++.+|.. ...+...+
T Consensus 206 ~q~~~~l~~~d~~tg~~~~~~~e~~~--~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----~~~lT~G~ 279 (353)
T PF00930_consen 206 DQNRLDLVLCDASTGETRVVLEETSD--GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----PRQLTSGD 279 (353)
T ss_dssp TSTEEEEEEEEECTTTCEEEEEEESS--SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----EEESS-SS
T ss_pred CCCEEEEEEEECCCCceeEEEEecCC--cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc----eeccccCc
Confidence 34445566667766543221111112 2221 11223 4777777666665553333334433322 11222222
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCC--CcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~--~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
++ .-.-+.++++++.||.....+ ..-.+|.++-.....+. .|.+.
T Consensus 280 ~~---------V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~---------------------~LT~~--- 326 (353)
T PF00930_consen 280 WE---------VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK---------------------CLTCE--- 326 (353)
T ss_dssp S----------EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE---------------------ESSTT---
T ss_pred ee---------ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE---------------------eccCC---
Confidence 21 123577899999998666643 34555665332012220 01111
Q ss_pred ccccCcccCCCCc-eEEECCCCCEEEEEeC
Q 023927 179 PEVQGHRLRGGPQ-MIQLSLDGKRLYVTNS 207 (275)
Q Consensus 179 ~~~~G~~~~g~Pr-~~~LSpDGk~LyVANs 207 (275)
. +.. ..++||||+++..+.|
T Consensus 327 -----~----~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 327 -----D----GDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -----S----STTEEEEE-TTSSEEEEEEE
T ss_pred -----C----CCceEEEECCCCCEEEEEEc
Confidence 1 134 7999999999998874
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=82.17 E-value=10 Score=39.24 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 108 EMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 108 ~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+||...+.|.+||||+||.++--=-=.|.+||+++
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan 83 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN 83 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc
Confidence 37789999999999999999988778999999965
No 218
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.15 E-value=2.7 Score=44.22 Aligned_cols=154 Identities=11% Similarity=0.118 Sum_probs=77.9
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc-c
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL-K 100 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~-~ 100 (275)
++|-....|.|||+...|.+.++.-. -.-+..|. |||-+.|. .+.-++..+- .|..++. .+. .
T Consensus 86 aagsasgtiK~wDleeAk~vrtLtgh--~~~~~sv~--f~P~~~~~-a~gStdtd~~--------iwD~Rk~---Gc~~~ 149 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVRTLTGH--LLNITSVD--FHPYGEFF-ASGSTDTDLK--------IWDIRKK---GCSHT 149 (825)
T ss_pred cccccCCceeeeehhhhhhhhhhhcc--ccCcceee--eccceEEe-ccccccccce--------ehhhhcc---Cceee
Confidence 66777779999999998876643211 11233333 69998865 3322211111 1221111 110 0
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCC-CCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCC---
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS--- 176 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg-~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~--- 176 (275)
+.+. ....--+++|||||++ ..++ +++|.+||... +++...... +.+.|-.+|=.++++..
T Consensus 150 ~~s~-----~~vv~~l~lsP~Gr~v--~~g~ed~tvki~d~~a---gk~~~ef~~-----~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 150 YKSH-----TRVVDVLRLSPDGRWV--ASGGEDNTVKIWDLTA---GKLSKEFKS-----HEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred ecCC-----cceeEEEeecCCCcee--eccCCcceeeeecccc---ccccccccc-----ccccccccccCchhhhhccC
Confidence 1110 0122356899999965 4444 48999999733 333321110 00111111111111100
Q ss_pred -------------CCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 177 -------------DVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 177 -------------~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
......|+...+++|..+++|||+.++..-
T Consensus 215 s~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred CCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 012234666677899999999999888654
No 219
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=82.03 E-value=39 Score=32.22 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccC---CCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 61 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILP---EMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 61 ~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~---~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
||+...+-...- .+-+.++. +.-+|..++++.++....+. .++...-+|+. +|+|-++.|+.
T Consensus 64 ~P~kS~vItt~K-k~Gl~VYD------LsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaa--------ASdR~~~~i~~ 128 (364)
T COG4247 64 NPDKSLVITTVK-KAGLRVYD------LSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAA--------ASDRQNDKIVF 128 (364)
T ss_pred CcCcceEEEeec-cCCeEEEe------cCCCeeeecCCCcccccccccCcccCCeEEEEEe--------cccccCCeEEE
Confidence 566654433322 23444443 33355556666554322111 24566666653 78899999999
Q ss_pred EEecCCCCCeE
Q 023927 138 YNIEDPKNPVL 148 (275)
Q Consensus 138 fdI~~~~~~~l 148 (275)
|.| +|....|
T Consensus 129 y~I-dp~~~~L 138 (364)
T COG4247 129 YKI-DPNPQYL 138 (364)
T ss_pred EEe-CCCccce
Confidence 999 5554444
No 220
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.89 E-value=22 Score=34.25 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=51.6
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
+.|+|....+.+.+--+++|-.+...++|.+..+...++ +.-+-++..|.||..+|.+.- ++++..
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-------------~~PvL~v~WsddgskVf~g~~-Dk~~k~ 98 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-------------DGPVLDVCWSDDGSKVFSGGC-DKQAKL 98 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhcc-------------CCCeEEEEEccCCceEEeecc-CCceEE
Confidence 445998888888888888888877655565544322222 245579999999999988776 678899
Q ss_pred EEecC
Q 023927 138 YNIED 142 (275)
Q Consensus 138 fdI~~ 142 (275)
||+..
T Consensus 99 wDL~S 103 (347)
T KOG0647|consen 99 WDLAS 103 (347)
T ss_pred EEccC
Confidence 99855
No 221
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.64 E-value=17 Score=33.94 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=33.2
Q ss_pred EEEEEEecCccccccccCCCCCceeEEEEcCCC-----CEEEEEeCCCCcEEEEEecC
Q 023927 90 HEVAISVKSLKVQNWILPEMPGLITDFLISLDD-----RFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 90 ~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDg-----rfLYVSNrg~~sIavfdI~~ 142 (275)
..+++.+++.-... ...-.+|+|.... .|.|+|.-+...|.|||+..
T Consensus 46 li~~~~~p~~~~~~------~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~ 97 (287)
T PF03022_consen 46 LIRRYPFPPDIAPP------DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT 97 (287)
T ss_dssp EEEEEE--CCCS-T------CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred EEEEEECChHHccc------ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence 35666776543332 1567899998832 69999999999999999965
No 222
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.47 E-value=68 Score=35.29 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=67.2
Q ss_pred cCCCcc-ccc-cCCccCCeEEEEECCCCCeeE---------------EEECCC-CCcc--------ceEE-EEEeCCCCC
Q 023927 13 TKGFNL-QHV-SDGLYGRHLFVYSWPDGELKQ---------------TLDLGN-TGLI--------PLEI-RFLHDPSKD 65 (275)
Q Consensus 13 ~~g~~~-~~~-~~g~~~d~I~v~d~~~~k~~~---------------~i~Lg~-~G~g--------P~~v-~f~f~P~g~ 65 (275)
...|.| ||+ +.+...++|.|||.+--+-.+ ..+|.+ .... =|+| ..+|||.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 356777 555 446788999999997421100 011110 0000 0111 145688877
Q ss_pred EEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 66 IGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 66 ~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
++|++.=+-.|-.+.+.+...|+ ++.- .|.- |..+-+.++|-.. |-+||--+.+|+|||.+.
T Consensus 220 -liVSG~DDRqVKlWrmnetKaWE------vDtc--rgH~-----nnVssvlfhp~q~-lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 220 -LIVSGADDRQVKLWRMNETKAWE------VDTC--RGHY-----NNVSSVLFHPHQD-LILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred -eEEecCCcceeeEEEecccccee------ehhh--hccc-----CCcceEEecCccc-eeEecCCCccEEEEeccc
Confidence 67777766666666655555553 2211 1211 3456777888655 779999999999999844
No 223
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=81.45 E-value=29 Score=33.93 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=67.2
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEE-EecCcccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAI-SVKSLKVQNW 104 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi-~i~~~~~~g~ 104 (275)
....|.||+.++..-+++++.++....-..+.. -|...--|++|--+++|.+.... | |++ +....+.+|-
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~--~PKnpeh~iVCNrsntv~imn~q--G-----QvVrsfsSGkREgG 438 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL--LPKNPEHFIVCNRSNTVYIMNMQ--G-----QVVRSFSSGKREGG 438 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEE--cCCCCceEEEEcCCCeEEEEecc--c-----eEEeeeccCCccCC
Confidence 456789999988877777766544444444433 57778889999999999988752 2 444 3444444431
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.. -...+||.|.|+|...- ++.+-+|.+..
T Consensus 439 ------dF-i~~~lSpkGewiYcigE-D~vlYCF~~~s 468 (508)
T KOG0275|consen 439 ------DF-INAILSPKGEWIYCIGE-DGVLYCFSVLS 468 (508)
T ss_pred ------ce-EEEEecCCCcEEEEEcc-CcEEEEEEeec
Confidence 23 35568999999997643 56778888844
No 224
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=81.06 E-value=5 Score=24.86 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
....+|.++|++++|..+.. +++|.+||
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~-D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSS-DGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEET-TSEEEEEE
T ss_pred CcEEEEEEecccccceeeCC-CCEEEEEC
Confidence 46789999999998877764 78999886
No 225
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.98 E-value=2.9 Score=32.78 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=27.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
..|..|++|+|+.||.||--+...|..|-++.
T Consensus 57 ~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 57 YFPNGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp SSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 47799999999999999999999999998854
No 226
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=80.46 E-value=19 Score=35.31 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+.|.-..+|.+||+.+.++-..+... .+-.. +.|-+ -+++|..|.. ++|-.|. ...|.+... +
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~--l~w~~-t~~l~t~c~~-g~v~~wD-aRtG~l~~~---------y 364 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICEHE---DGVTK--LKWLN-TDYLLTACAN-GKVRQWD-ARTGQLKFT---------Y 364 (399)
T ss_pred hcccccceEEEEecccchhheeccCC---CceEE--EEEcC-cchheeeccC-ceEEeee-ccccceEEE---------E
Confidence 44777889999999987664444442 23333 44577 7888888764 4444442 233433221 1
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
.|.. ....++++|||.|++ |+--.+|.-.||++
T Consensus 365 ~GH~-----~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TGHQ-----MGILDFALSPQKRLV-VTVSDDNTALVFEV 397 (399)
T ss_pred ecCc-----hheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence 2321 345799999999966 78888899999987
No 227
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.43 E-value=4.4 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=13.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCC
Q 023927 112 LITDFLISLDDRFLYFSNWLH 132 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~ 132 (275)
.-....+|||||+||-+...+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT
T ss_pred cccCEEEecCCCEEEEEecCC
Confidence 346788999998765544433
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.04 E-value=54 Score=33.74 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=59.1
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+-|.+...|..|++..+++..++.-+. -+++.-.. .-+.+...+|-+.+- -.|..+. ....+++.+-..
T Consensus 74 vlgt~~g~v~~ys~~~g~it~~~st~~-h~~~v~~~-~~~~~~~ciyS~~ad-~~v~~~~------~~~~~~~~~~~~-- 142 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEITAKLSTDK-HYGNVNEI-LDAQRLGCIYSVGAD-LKVVYIL------EKEKVIIRIWKE-- 142 (541)
T ss_pred EeecCCccEEEEEecCCeEEEEEecCC-CCCcceee-ecccccCceEecCCc-eeEEEEe------cccceeeeeecc--
Confidence 447788888888888888876665432 22333221 225556666655332 2222221 112233333211
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
.+..++-|++||||+-|-++.| +|.+|+|.+
T Consensus 143 -------~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~ 173 (541)
T KOG4547|consen 143 -------QKPLVSSLCISPDGKILLTASR---QIKVLDIET 173 (541)
T ss_pred -------CCCccceEEEcCCCCEEEeccc---eEEEEEccC
Confidence 1257789999999999988754 899999955
No 229
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.92 E-value=71 Score=32.18 Aligned_cols=108 Identities=13% Similarity=0.232 Sum_probs=66.9
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-C--C-CCeeEEEEEEec
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-Q--D-GSWNHEVAISVK 97 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~--~-G~~~~~~vi~i~ 97 (275)
+.|-...+|.+||+++++..+++.-- | .+.+ .+.+||.....-+++-.+++|..+.-. . . -.|....-+
T Consensus 260 aSgsaD~TV~lWD~~~g~p~~s~~~~--~-k~Vq-~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V--- 332 (463)
T KOG0270|consen 260 ASGSADKTVKLWDVDTGKPKSSITHH--G-KKVQ-TLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV--- 332 (463)
T ss_pred EecCCCceEEEEEcCCCCcceehhhc--C-Ccee-EEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce---
Confidence 45777899999999999987766532 2 3343 345699999999998888888887532 1 1 134332211
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEE
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQI 152 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v 152 (275)
--+...|---+.+++.-..|.|.-||+..++++....+.
T Consensus 333 ----------------Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A 371 (463)
T KOG0270|consen 333 ----------------EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA 371 (463)
T ss_pred ----------------EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe
Confidence 122333333334444455566777888777766654443
No 230
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=79.87 E-value=38 Score=34.78 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCCccccc-cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEE
Q 023927 14 KGFNLQHV-SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEV 92 (275)
Q Consensus 14 ~g~~~~~~-~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~ 92 (275)
.+|.|+.. +.|.-..+..|+|.+++.+++.. . + ..|+.+ ..|+|+|.++-|+.- ++.|..|..+++|....+.
T Consensus 413 ~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~--d-~~~ls~-v~ysp~G~~lAvgs~-d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 413 ADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-T--D-NEQLSV-VRYSPDGAFLAVGSH-DNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eeccCcceEEEeeccceEEEEecccceeEEEE-e--c-CCceEE-EEEcCCCCEEEEecC-CCeEEEEEECCCCcEEEEe
Confidence 46667665 44888889999999986665532 2 2 256664 457999998777643 4667666667776432222
Q ss_pred EEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 93 AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 93 vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
-. -.| ...+.+-.|+|++|| ++|-++-.|--|+
T Consensus 487 ~k------~~g-------s~ithLDwS~Ds~~~-~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 487 GK------CSG-------SPITHLDWSSDSQFL-VSNSGDYEILYWK 519 (626)
T ss_pred ee------ecC-------ceeEEeeecCCCceE-EeccCceEEEEEc
Confidence 11 112 345788999999998 8999998888883
No 231
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.61 E-value=3 Score=25.33 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=14.5
Q ss_pred CCceEEECCCCCEEEEEe
Q 023927 189 GPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVAN 206 (275)
.|+.++++++|+ ||||.
T Consensus 3 ~P~gvav~~~g~-i~VaD 19 (28)
T PF01436_consen 3 YPHGVAVDSDGN-IYVAD 19 (28)
T ss_dssp SEEEEEEETTSE-EEEEE
T ss_pred CCcEEEEeCCCC-EEEEE
Confidence 399999997775 99998
No 232
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.33 E-value=57 Score=31.11 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=15.4
Q ss_pred CCCEEEEEeCCCCcEEEEEecC
Q 023927 121 DDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 121 DgrfLYVSNrg~~sIavfdI~~ 142 (275)
.+..||+.++ .+.+..+|+.+
T Consensus 255 ~~~~vy~~~~-~g~l~ald~~t 275 (394)
T PRK11138 255 VGGVVYALAY-NGNLVALDLRS 275 (394)
T ss_pred ECCEEEEEEc-CCeEEEEECCC
Confidence 4667999887 46788888743
No 233
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=62 Score=32.97 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=79.0
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec-cCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA-LASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e-L~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
++.|-..+.++|||......++++.- .-+.-. +++|+|-.+-+-.+++ -....++|+....|. .+-.+.
T Consensus 316 lASGgnDN~~~Iwd~~~~~p~~~~~~--H~aAVK--A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~----~i~~vd-- 385 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEPKFTFTE--HTAAVK--ALAWCPWQSGLLATGGGSADRCIKFWNTNTGA----RIDSVD-- 385 (484)
T ss_pred eccCCCccceEeccCCCccccEEEec--cceeee--EeeeCCCccCceEEcCCCcccEEEEEEcCCCc----Eecccc--
Confidence 35577889999999966555544432 122333 4566886655555444 444555555433221 111222
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEE-eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFS-NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV 178 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVS-Nrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~ 178 (275)
.++...-|+-|+..|-|-.+ -...|.|.+|+... .+++.... |.-.|
T Consensus 386 ---------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---~~~~~~l~--gH~~R------------------ 433 (484)
T KOG0305|consen 386 ---------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS---MKLVAELL--GHTSR------------------ 433 (484)
T ss_pred ---------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---cceeeeec--CCcce------------------
Confidence 23677899999999766333 33579999999833 44433221 11111
Q ss_pred ccccCcccCCCCceEEECCCCCEEEEEeC
Q 023927 179 PEVQGHRLRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 179 ~~~~G~~~~g~Pr~~~LSpDGk~LyVANs 207 (275)
==.+++||||.++.++.+
T Consensus 434 -----------Vl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 434 -----------VLYLALSPDGETIVTGAA 451 (484)
T ss_pred -----------eEEEEECCCCCEEEEecc
Confidence 125899999999999983
No 234
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.50 E-value=19 Score=37.75 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=68.9
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCC-----CCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQ-----DGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH 132 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~-----~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~ 132 (275)
+++-...+.+++++.|+..|+++.+.. -+.+...++-++.. |-. ...+.++..+.| ++.||--..
T Consensus 123 la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s----G~k-----~siYSLA~N~t~-t~ivsGgte 192 (735)
T KOG0308|consen 123 LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS----GPK-----DSIYSLAMNQTG-TIIVSGGTE 192 (735)
T ss_pred eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC----CCc-----cceeeeecCCcc-eEEEecCcc
Confidence 333466778899999999999998741 01233333333331 111 345778888888 899999889
Q ss_pred CcEEEEEecCCC-CCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeC
Q 023927 133 GDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 133 ~sIavfdI~~~~-~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANs 207 (275)
+.|++||-.... -.+|.|... .-|.+-+++||++++-|.|
T Consensus 193 k~lr~wDprt~~kimkLrGHTd-----------------------------------NVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTD-----------------------------------NVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred cceEEeccccccceeeeecccc-----------------------------------ceEEEEEcCCCCeEeecCC
Confidence 999999964421 123322111 2678999999999999873
No 235
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=78.34 E-value=16 Score=36.40 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=61.6
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc-
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN- 103 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g- 103 (275)
-...+|.|||-.++++++.- .+.+|..|--+.| =.+|+ ++..+- .++..+|+.--+|...+.
T Consensus 192 ckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raif--l~~g~-i~tTGf-------------sr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIF--LASGK-IFTTGF-------------SRMSERQIALWDPNNLEEP 254 (472)
T ss_pred cccceeEEEcCCCCcEeeec-ccccCCCcceeEE--eccCc-eeeecc-------------ccccccceeccCcccccCc
Confidence 35678999999999988765 4556666654444 56666 443322 145555554444332220
Q ss_pred cccCCCCCceeEEE---EcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 104 WILPEMPGLITDFL---ISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 104 ~~~~~~~~~~adI~---iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
..+-+| ...+.|+ -.+|-+-||+.--|+++|+-|.|++
T Consensus 255 ~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 255 IALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 000000 1223343 3799999999999999999999966
No 236
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=77.82 E-value=11 Score=37.15 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=54.7
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..|....+|.|||+.+++.+.+. ++ .-...+|++| + +| .-|.|--+-++.++..+..-.. .-..+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tl-ih-HceaVLhlrf--~-ng--~mvtcSkDrsiaVWdm~sps~i--------t~rrV 315 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTL-IH-HCEAVLHLRF--S-NG--YMVTCSKDRSIAVWDMASPTDI--------TLRRV 315 (499)
T ss_pred EecCCCceEEEEeccCCchhhHH-hh-hcceeEEEEE--e-CC--EEEEecCCceeEEEeccCchHH--------HHHHH
Confidence 45666777888888877655432 11 1225677776 2 22 2345555555555554321000 00000
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
- +|-.+|-=.+.=|+| +-||--|+.+|.+|+++.
T Consensus 316 L------vGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 316 L------VGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTST 349 (499)
T ss_pred H------hhhhhheeeeccccc-eEEEecCCceEEEEeccc
Confidence 0 122334445667888 558889999999999854
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=77.53 E-value=2.3 Score=43.46 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=43.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
..+..+.+|||||+|=+= --++-+++|+-.. .+|++ ..+.++||=
T Consensus 291 g~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt---~eLlg-------------------------------~mkSYFGGL 335 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATV-SQDGFLRIFDFDT---QELLG-------------------------------VMKSYFGGL 335 (636)
T ss_pred ccccceeEcCCCceEEEE-ecCceEEEeeccH---HHHHH-------------------------------HHHhhccce
Confidence 367899999999998433 3368899999833 34422 134556666
Q ss_pred ceEEECCCCCEEEEEe
Q 023927 191 QMIQLSLDGKRLYVTN 206 (275)
Q Consensus 191 r~~~LSpDGk~LyVAN 206 (275)
=-++.||||||+.+.-
T Consensus 336 LCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 336 LCVCWSPDGKYIVTGG 351 (636)
T ss_pred EEEEEcCCccEEEecC
Confidence 6789999999887665
No 238
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=76.68 E-value=30 Score=35.14 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=65.0
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCc-EEEEEeCCCCCeeEEEEEEecCcccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAST-MVRFSKTQDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~st-V~~~~~~~~G~~~~~~vi~i~~~~~~ 102 (275)
|-...+|++|+..+++.++.++-+. .-=. ++++|..+.+-+....+.. |.++.|.. + +++..+ .
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdtgs---QVcs--L~Wsk~~kEi~sthG~s~n~i~lw~~ps---~--~~~~~l-----~ 428 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDTGS---QVCS--LIWSKKYKELLSTHGYSENQITLWKYPS---M--KLVAEL-----L 428 (484)
T ss_pred CCcccEEEEEEcCCCcEecccccCC---ceee--EEEcCCCCEEEEecCCCCCcEEEEeccc---c--ceeeee-----c
Confidence 6667899999999999998887653 3334 4459998777766665444 33333321 1 122222 1
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
|.. ...-.+.+||||.++ |+-.++.+++.|.+-+.
T Consensus 429 gH~-----~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GHT-----SRVLYLALSPDGETI-VTGAADETLRFWNLFDE 463 (484)
T ss_pred CCc-----ceeEEEEECCCCCEE-EEecccCcEEeccccCC
Confidence 111 235688999999998 55667899999999653
No 239
>KOG4328 consensus WD40 protein [Function unknown]
Probab=74.89 E-value=54 Score=33.18 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=61.3
Q ss_pred CccCCeEEEEECCCCCe-eEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEE--EEEecCcc
Q 023927 24 GLYGRHLFVYSWPDGEL-KQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEV--AISVKSLK 100 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~-~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~--vi~i~~~~ 100 (275)
+.+| ..++||+...+- +.-+.+-. ---.+|++ ||-.++.++.+.++.|.-.+... .+..+. .++..+-.
T Consensus 298 ~~~G-~f~~iD~R~~~s~~~~~~lh~--kKI~sv~~--NP~~p~~laT~s~D~T~kIWD~R---~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 298 DNVG-NFNVIDLRTDGSEYENLRLHK--KKITSVAL--NPVCPWFLATASLDQTAKIWDLR---QLRGKASPFLSTLPHR 369 (498)
T ss_pred eccc-ceEEEEeecCCccchhhhhhh--cccceeec--CCCCchheeecccCcceeeeehh---hhcCCCCcceeccccc
Confidence 4455 677888776543 21122211 12334555 99999999999998887666532 122222 34333221
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
-..+...+||+|-.| +++--++.|++||.+
T Consensus 370 ----------rsV~sAyFSPs~gtl-~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 370 ----------RSVNSAYFSPSGGTL-LTTCQDNEIRVFDSS 399 (498)
T ss_pred ----------ceeeeeEEcCCCCce-EeeccCCceEEeecc
Confidence 234577899998885 666668999999984
No 240
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.51 E-value=13 Score=39.44 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=46.8
Q ss_pred EeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 023927 59 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 138 (275)
Q Consensus 59 ~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavf 138 (275)
+++++|+++|..|- +-|..... ++|.-. .-.+.++. +...+++.|+||++.||.+-|+ .-+++|
T Consensus 26 ~~s~nG~~L~t~~~--d~Vi~idv-~t~~~~---l~s~~~ed---------~d~ita~~l~~d~~~L~~a~rs-~llrv~ 89 (775)
T KOG0319|consen 26 AWSSNGQHLYTACG--DRVIIIDV-ATGSIA---LPSGSNED---------EDEITALALTPDEEVLVTASRS-QLLRVW 89 (775)
T ss_pred eECCCCCEEEEecC--ceEEEEEc-cCCcee---cccCCccc---------hhhhheeeecCCccEEEEeecc-ceEEEE
Confidence 44999999998864 44544442 223221 11122222 1456899999999999999995 478999
Q ss_pred EecCCCCCeEEE
Q 023927 139 NIEDPKNPVLTG 150 (275)
Q Consensus 139 dI~~~~~~~lv~ 150 (275)
++.. ++++.
T Consensus 90 ~L~t---gk~ir 98 (775)
T KOG0319|consen 90 SLPT---GKLIR 98 (775)
T ss_pred Eccc---chHhH
Confidence 9843 45544
No 241
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=74.41 E-value=6 Score=37.98 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=43.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
...++|.+||...+|.++.--+|+|++|++++. +.++++... ...|-+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g~~~~ka~~------------------------------~~~~Pv 75 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNS--GQLVPKAQQ------------------------------SHDGPV 75 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecC--Ccccchhhh------------------------------ccCCCe
Confidence 366899999977777744444899999999764 333321110 011126
Q ss_pred ceEEECCCCCEEEEEe
Q 023927 191 QMIQLSLDGKRLYVTN 206 (275)
Q Consensus 191 r~~~LSpDGk~LyVAN 206 (275)
-..+.|.||..+|.+.
T Consensus 76 L~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGG 91 (347)
T ss_pred EEEEEccCCceEEeec
Confidence 7889999999999987
No 242
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.18 E-value=18 Score=34.73 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=51.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
..|.+++.+|||---|-..+ .+.|-..| |.+++. .++++| .|.+ |
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLd---P~tGev-~~ypLg--------------------------~Ga~----P 106 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLD---PATGEV-ETYPLG--------------------------SGAS----P 106 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecC---CCCCce-EEEecC--------------------------CCCC----C
Confidence 56789999999996665555 45666555 443433 334443 4777 9
Q ss_pred ceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCee
Q 023927 191 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA 240 (275)
Q Consensus 191 r~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~ 240 (275)
+.+++.|||. +.++. + +..|.|+ |++|++.+
T Consensus 107 hgiv~gpdg~-~Witd---------------~-~~aI~R~--dpkt~evt 137 (353)
T COG4257 107 HGIVVGPDGS-AWITD---------------T-GLAIGRL--DPKTLEVT 137 (353)
T ss_pred ceEEECCCCC-eeEec---------------C-cceeEEe--cCcccceE
Confidence 9999999997 66665 1 3378877 66777653
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=73.99 E-value=28 Score=35.56 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=47.9
Q ss_pred cceEEEEEeCCCCCEEEE--eeccCCcEEEEEeCCCCCeeEEEEE-EecCccccccccCCCCCceeEEEEcCCCCEEEEE
Q 023927 52 IPLEIRFLHDPSKDIGFV--GCALASTMVRFSKTQDGSWNHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS 128 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV--~~eL~stV~~~~~~~~G~~~~~~vi-~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVS 128 (275)
+++. +.+|+|.++|+-+ ..-|.++|-.|+. .|++ .++ .+ .| ...+=+..||||.|+|++
T Consensus 316 ~~rN-T~~fsp~~r~il~agF~nl~gni~i~~~--~~rf---~~~~~~-----~~-------~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 316 QKRN-TIFFSPHERYILFAGFDNLQGNIEIFDP--AGRF---KVAGAF-----NG-------LNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred cccc-cccccCcccEEEEecCCccccceEEecc--CCce---EEEEEe-----ec-------CCceEeeccCCceEEEec
Confidence 4444 3557999998877 3446666666653 2333 222 21 11 244567799999999998
Q ss_pred e-----CCCCcEEEEEecC
Q 023927 129 N-----WLHGDIRQYNIED 142 (275)
Q Consensus 129 N-----rg~~sIavfdI~~ 142 (275)
- |-+|+|.+|+|..
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred CCCcccccCcceEEEEecC
Confidence 6 4579999999955
No 244
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=73.92 E-value=21 Score=34.22 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=80.4
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCC-----CCeeEEEEEEe
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQD-----GSWNHEVAISV 96 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~-----G~~~~~~vi~i 96 (275)
+-|-.+.+|++||+...+.-.+..-..--+.-|.|++ -| .+.+||..-..+-|.+=+.+.. -++..+-.-..
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~--~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL--VP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEE--ec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 3344667777788876432111111111245677776 67 5668999888888887776432 22333322111
Q ss_pred cCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCC
Q 023927 97 KSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS 176 (275)
Q Consensus 97 ~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~ 176 (275)
. ++.+ .. --..+|.+||=-++| ++--.+|-|..||.....+.+.....+
T Consensus 226 ~-~~~~-~~-----yPVNai~Fhp~~~tf-aTgGsDG~V~~Wd~~~rKrl~q~~~~~----------------------- 274 (323)
T KOG1036|consen 226 E-KDTE-II-----YPVNAIAFHPIHGTF-ATGGSDGIVNIWDLFNRKRLKQLAKYE----------------------- 274 (323)
T ss_pred c-CCce-EE-----EEeceeEeccccceE-EecCCCceEEEccCcchhhhhhccCCC-----------------------
Confidence 1 1111 11 123589999987766 566668999999985533332211110
Q ss_pred CCccccCcccCCCCceEEECCCCCEEEEEeC
Q 023927 177 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 207 (275)
Q Consensus 177 ~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANs 207 (275)
+ .=-.++++-||..|-+|.|
T Consensus 275 ------~-----SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 ------T-----SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ------C-----ceEEEEeccCCCeEEEEec
Confidence 0 0225799999999999986
No 245
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=73.89 E-value=32 Score=34.08 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=69.1
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC--CCCCeeEEEEEEecCcccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT--QDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~--~~G~~~~~~vi~i~~~~~~ 102 (275)
-..|+|.+||+.+++.+.++.-+. .-..+. ++|..+ -++|.-+..+.+++.. .+|.....+.+
T Consensus 278 SwDHTIk~WDletg~~~~~~~~~k---sl~~i~--~~~~~~--Ll~~gssdr~irl~DPR~~~gs~v~~s~~-------- 342 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTLTTNK---SLNCIS--YSPLSK--LLASGSSDRHIRLWDPRTGDGSVVSQSLI-------- 342 (423)
T ss_pred cccceEEEEEeecccceeeeecCc---ceeEee--cccccc--eeeecCCCCceeecCCCCCCCceeEEeee--------
Confidence 467999999999998877665433 344443 377554 4566667777777643 23433222222
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 144 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~ 144 (275)
|.. +-.+.+.-||-.-|++||---+|.+.+||+....
T Consensus 343 gH~-----nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 343 GHK-----NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cch-----hhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 111 3457889999999999999999999999996643
No 246
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.76 E-value=16 Score=37.19 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=37.0
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccc---ccccCCCCCceeEEEEcCCCCEEEEEeC
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ---NWILPEMPGLITDFLISLDDRFLYFSNW 130 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~---g~~~~~~~~~~adI~iSpDgrfLYVSNr 130 (275)
.+..|+|+.+||.+. +++.++.-+. -.++.++.++-.|.+.. +..+--+-+.-+=++.|+||- ||-|
T Consensus 226 llL~Pdg~~LYv~~g--~~~~v~~L~~-r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~---vsQW 295 (733)
T COG4590 226 LLLTPDGKTLYVRTG--SELVVALLDK-RSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL---VSQW 295 (733)
T ss_pred hEECCCCCEEEEecC--CeEEEEeecc-cccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc---eeee
Confidence 456999999999987 6777765432 13444454443333111 111111223446677788875 5555
No 247
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=73.08 E-value=17 Score=37.85 Aligned_cols=103 Identities=11% Similarity=0.164 Sum_probs=65.1
Q ss_pred cceEEEEEeCCCCCEEEEeeccCCcEEEE-EeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeC
Q 023927 52 IPLEIRFLHDPSKDIGFVGCALASTMVRF-SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW 130 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV~~eL~stV~~~-~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNr 130 (275)
.-+.|.+ |-.|.|+=+++.-+++-.++ ++ +....+. .+=.+.. +.+-...++|---+|+||..
T Consensus 523 ~i~~vtW--HrkGDYlatV~~~~~~~~VliHQ-----LSK~~sQ-~PF~ksk--------G~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 523 SIRQVTW--HRKGDYLATVMPDSGNKSVLIHQ-----LSKRKSQ-SPFRKSK--------GLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred ccceeee--ecCCceEEEeccCCCcceEEEEe-----ccccccc-CchhhcC--------CceeEEEecCCCceEEEEec
Confidence 3445555 99999998888765554444 32 2222222 2211111 46788999999999999986
Q ss_pred CCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 131 LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 131 g~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.+|++||+.. ..|+...-+|- + +=-.|+++|.|.-|++.|
T Consensus 587 --~~vRiYdL~k---qelvKkL~tg~---------------------------k----wiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 587 --RSVRIYDLSK---QELVKKLLTGS---------------------------K----WISSMSIHPNGDNLILGS 626 (733)
T ss_pred --cceEEEehhH---HHHHHHHhcCC---------------------------e----eeeeeeecCCCCeEEEec
Confidence 6799999854 33333223321 1 244688888888888887
No 248
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=72.94 E-value=90 Score=29.85 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=64.8
Q ss_pred EEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 023927 55 EIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 134 (275)
Q Consensus 55 ~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~s 134 (275)
.|++ +.+|..+| +|.-++++.+++-. +|. ..-+ +.|.. +..=-|.|+-|-+.| ++-..+++
T Consensus 15 qiKy--N~eGDLlF-scaKD~~~~vw~s~-nGe----rlGt-----y~GHt-----GavW~~Did~~s~~l-iTGSAD~t 75 (327)
T KOG0643|consen 15 QIKY--NREGDLLF-SCAKDSTPTVWYSL-NGE----RLGT-----YDGHT-----GAVWCCDIDWDSKHL-ITGSADQT 75 (327)
T ss_pred eEEe--cCCCcEEE-EecCCCCceEEEec-CCc----eeee-----ecCCC-----ceEEEEEecCCccee-eeccccce
Confidence 3444 88898777 67778888888742 231 1111 12221 223356788888876 77778999
Q ss_pred EEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 135 IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 135 IavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+..||+. +++.+++..++- . -|-+.+|++|.+.+++.
T Consensus 76 ~kLWDv~---tGk~la~~k~~~----------------------------~----Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 76 AKLWDVE---TGKQLATWKTNS----------------------------P----VKRVDFSFGGNLILAST 112 (327)
T ss_pred eEEEEcC---CCcEEEEeecCC----------------------------e----eEEEeeccCCcEEEEEe
Confidence 9999993 477777777632 1 45678999999877776
No 249
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.80 E-value=11 Score=41.26 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=69.8
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEE-EEEeCCCCC-EEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEI-RFLHDPSKD-IGFVGCALASTMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v-~f~f~P~g~-~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
+.+....++.|||+...+.+ ++|.. ..+=.++ ...+||+.. .+-|..|=++.=++. .|..+. ++.+.+
T Consensus 178 AS~s~sg~~~iWDlr~~~pi--i~ls~-~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq------lWDlR~-assP~k 247 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPI--IKLSD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ------LWDLRF-ASSPLK 247 (1049)
T ss_pred hccCCCCCceeccccCCCcc--ccccc-CCCccceeeeeeCCCCceeeeeecCCCCCceeE------eecccc-cCCchh
Confidence 44667779999999987654 45532 1110111 245699864 444443322211111 122111 122222
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeec
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRK 160 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~ 160 (275)
.+++.. ..+-.+...+.|-.|-+||--+|.|-+|.. .+.+.+++++++|.+..
T Consensus 248 ~~~~H~-----~GilslsWc~~D~~lllSsgkD~~ii~wN~---~tgEvl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 248 ILEGHQ-----RGILSLSWCPQDPRLLLSSGKDNRIICWNP---NTGEVLGELPAQGNWCF 300 (1049)
T ss_pred hhcccc-----cceeeeccCCCCchhhhcccCCCCeeEecC---CCceEeeecCCCCccee
Confidence 223221 234566678888667799999999999985 56889999999887765
No 250
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=71.68 E-value=22 Score=35.58 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=65.3
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
++-|-..+.+.|||+..++.+.+|+- .-...-.|+| +|+..+.-|.|..++++-.+.-. .|...++..=-
T Consensus 360 lATgs~Dnt~kVWDLR~r~~ly~ipA--H~nlVS~Vk~--~p~~g~fL~TasyD~t~kiWs~~---~~~~~ksLaGH--- 429 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRMRSELYTIPA--HSNLVSQVKY--SPQEGYFLVTASYDNTVKIWSTR---TWSPLKSLAGH--- 429 (459)
T ss_pred EeecCCCCcEEEeeecccccceeccc--ccchhhheEe--cccCCeEEEEcccCcceeeecCC---CcccchhhcCC---
Confidence 45577889999999999887665542 2233345566 99888888999998888777532 46555443211
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 138 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavf 138 (275)
+ +...-+.||+|+.++--+.+ +++|.-|
T Consensus 430 -e--------~kV~s~Dis~d~~~i~t~s~-DRT~KLW 457 (459)
T KOG0272|consen 430 -E--------GKVISLDISPDSQAIATSSF-DRTIKLW 457 (459)
T ss_pred -c--------cceEEEEeccCCceEEEecc-Cceeeec
Confidence 1 34567889999998854443 5555443
No 251
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=71.10 E-value=99 Score=29.54 Aligned_cols=115 Identities=13% Similarity=0.177 Sum_probs=71.6
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
|+.+.|...+.+|.-..+...-.-.|.....---.++ |+++|+++ ..|--+-+||++..++++.++-..++.--..+
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va--ws~sG~~L-ATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA--WSASGNYL-ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEE--EcCCCCEE-EEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 3446677778887766554433333422233334444 59999965 56777889999998888888655555332223
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEE
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQ 151 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~ 151 (275)
+. -+..+|-.- |.+|+-=+|+|.+|+-.+++.-.++++
T Consensus 153 VK------------~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 153 VK------------HVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred cc------------EEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 32 344555444 557888899999999754444445443
No 252
>smart00284 OLF Olfactomedin-like domains.
Probab=70.99 E-value=91 Score=29.09 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=61.0
Q ss_pred EEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCC
Q 023927 42 QTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLD 121 (275)
Q Consensus 42 ~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpD 121 (275)
.+..|+....|.-||++ + ..+|-..+-+.+|+++... .+...+.+. ++...+.. ..+=.-+.-++|-+.-|
T Consensus 66 ~~~~Lp~~~~GtG~VVY--n---gslYY~~~~s~~iiKydL~-t~~v~~~~~--Lp~a~y~~-~~~Y~~~~~sdiDlAvD 136 (255)
T smart00284 66 TDHPLPHAGQGTGVVVY--N---GSLYFNKFNSHDICRFDLT-TETYQKEPL--LNGAGYNN-RFPYAWGGFSDIDLAVD 136 (255)
T ss_pred eEEECCCccccccEEEE--C---ceEEEEecCCccEEEEECC-CCcEEEEEe--cCcccccc-ccccccCCCccEEEEEc
Confidence 35677655677778775 3 4567788888999998752 222322222 23222221 00101123456666666
Q ss_pred CCEE---EEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 122 DRFL---YFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 122 grfL---YVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
..=| |++....+.|.+=++ +|.++.+.....+
T Consensus 137 E~GLWvIYat~~~~g~ivvSkL-np~tL~ve~tW~T 171 (255)
T smart00284 137 ENGLWVIYATEQNAGKIVISKL-NPATLTIENTWIT 171 (255)
T ss_pred CCceEEEEeccCCCCCEEEEee-CcccceEEEEEEc
Confidence 6644 555677788888888 5677888777766
No 253
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=69.63 E-value=11 Score=38.76 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=42.6
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
|+|+|||+|+=++.+ ++.+-+|+++.. ...-+-.--|.|. .-+.-||||||+ |.---+|=|.|
T Consensus 296 f~FS~DG~~LA~VSq-DGfLRvF~fdt~------eLlg~mkSYFGGL---------LCvcWSPDGKyI-vtGGEDDLVtV 358 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQ-DGFLRIFDFDTQ------ELLGVMKSYFGGL---------LCVCWSPDGKYI-VTGGEDDLVTV 358 (636)
T ss_pred eeEcCCCceEEEEec-CceEEEeeccHH------HHHHHHHhhccce---------EEEEEcCCccEE-EecCCcceEEE
Confidence 667999998877754 244555544321 1111111112222 467789999977 55555788899
Q ss_pred EEecCCCCCeEEE
Q 023927 138 YNIEDPKNPVLTG 150 (275)
Q Consensus 138 fdI~~~~~~~lv~ 150 (275)
|...+ .++|+
T Consensus 359 wSf~e---rRVVA 368 (636)
T KOG2394|consen 359 WSFEE---RRVVA 368 (636)
T ss_pred EEecc---ceEEE
Confidence 99844 45544
No 254
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=69.56 E-value=49 Score=30.06 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.0
Q ss_pred CceEEECCCCCEEEEEe
Q 023927 190 PQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVAN 206 (275)
=..|.+||||+|+-+.-
T Consensus 114 I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 114 ITALRVSPDGTRVAVVV 130 (253)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 46899999999998876
No 255
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=69.53 E-value=91 Score=30.27 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=85.3
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCC-CEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSK-DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g-~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
..+.+.+.+.|||.++-+....++++ +-.-+| ++ +|=. +|..+...-.+.-+++-.-+.|.+... +...
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me--~~VYsh-am--Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-----LsGH 187 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKME--GKVYSH-AM--SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-----LSGH 187 (397)
T ss_pred ecccccceEEEeecccceeeEEeecC--ceeehh-hc--ChhhhcceEEEEecCCCcEEEEeccCCcceee-----eccc
Confidence 45668999999999987776677763 333333 23 6643 366666554333333332244554332 1111
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC-CCCeEEEEEEecceeecCCceeeecCCCCCCCCCCc
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP 179 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~-~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~ 179 (275)
. ...-++--||.-.|+.++---++.|+-|||... +....+.+-.+ . ....++ +.+
T Consensus 188 r---------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~--k----------~~p~~~---~n~ 243 (397)
T KOG4283|consen 188 R---------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT--K----------RPPILK---TNT 243 (397)
T ss_pred c---------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC--c----------cCcccc---ccc
Confidence 1 233577789999999999888999999999553 33333332221 0 000111 223
Q ss_pred cccCcccCCCCceEEECCCCCEEEEEe
Q 023927 180 EVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 180 ~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
...|+ -+.++.+.||++|...-
T Consensus 244 ah~gk-----vngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 244 AHYGK-----VNGLAWTSDARYLASCG 265 (397)
T ss_pred cccce-----eeeeeecccchhhhhcc
Confidence 33455 67889999999887654
No 256
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.36 E-value=56 Score=32.97 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=56.7
Q ss_pred cccccCCccCCeEEEEECCCCCeeEEEECCCCCccceE---------EEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCe
Q 023927 18 LQHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLE---------IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSW 88 (275)
Q Consensus 18 ~~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~---------v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~ 88 (275)
-++++.|-....|.+|++.+.|.+-+..+. .|-.|.+ ..++.-|... ++.++.-++.|=++.- ++| +
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~A-Hgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i-~~g-~ 413 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLA-HGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKI-EDG-L 413 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeecc-ccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEe-cCC-c
Confidence 356677888899999999999998877774 3544442 0112223322 3333333333333322 222 2
Q ss_pred eEEEEE-EecCccccccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 023927 89 NHEVAI-SVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL 131 (275)
Q Consensus 89 ~~~~vi-~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg 131 (275)
.+...+ +++ +......|.+++||++|+|+.--
T Consensus 414 r~i~~l~~ls-----------~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 414 RAINLLYSLS-----------LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccceeeecc-----------cccEEEEEEEccCCCEEEEeccc
Confidence 222222 221 22466899999999999998553
No 257
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=69.12 E-value=22 Score=37.62 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=48.7
Q ss_pred EEeCCCCCEEEEeeccCC---cEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCc
Q 023927 58 FLHDPSKDIGFVGCALAS---TMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGD 134 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~s---tV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~s 134 (275)
++-+|+|+.+--.|--+. +++.++. .+.|...+.+.--. =..+.|.+|||||||-..+| +..
T Consensus 531 l~~s~~gnliASaCKS~~~ehAvI~lw~--t~~W~~~~~L~~Hs------------LTVT~l~FSpdg~~LLsvsR-DRt 595 (764)
T KOG1063|consen 531 LAISPTGNLIASACKSSLKEHAVIRLWN--TANWLQVQELEGHS------------LTVTRLAFSPDGRYLLSVSR-DRT 595 (764)
T ss_pred EEecCCCCEEeehhhhCCccceEEEEEe--ccchhhhheecccc------------eEEEEEEECCCCcEEEEeec-Cce
Confidence 445999998777765322 3344443 34676666442221 13479999999999999998 568
Q ss_pred EEEEEecCCCCC
Q 023927 135 IRQYNIEDPKNP 146 (275)
Q Consensus 135 IavfdI~~~~~~ 146 (275)
+++|.+.+..++
T Consensus 596 ~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 596 VSLYEVQEDIKD 607 (764)
T ss_pred EEeeeeecccch
Confidence 999998654333
No 258
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.99 E-value=33 Score=32.30 Aligned_cols=118 Identities=6% Similarity=0.062 Sum_probs=68.7
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
+.-.|..+|.+|....++..+...-....+.--.|.|+.|.-|-.+++.+ -+++|.++.++.+|.|...++...-+-.+
T Consensus 74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas-SDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS-SDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee-CCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 33468899999999888654422211122345566776666666666554 36899999998888898877654333322
Q ss_pred cccccCCCCCc-e-eEEEEcCCC-CEEEEEeCCCCcEEEEEecC
Q 023927 102 QNWILPEMPGL-I-TDFLISLDD-RFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~-~-adI~iSpDg-rfLYVSNrg~~sIavfdI~~ 142 (275)
...... |+. | +.+--.|-. -+=+||--.+|.|.+|+-++
T Consensus 153 nsVswa--pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 153 NSVSWA--PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred ceeeec--CcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 211000 111 1 111111211 23458888899999999855
No 259
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.64 E-value=31 Score=32.97 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=36.5
Q ss_pred ceeEEEEcCCCCEEEEE-eCCCCc---EEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccC
Q 023927 112 LITDFLISLDDRFLYFS-NWLHGD---IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR 187 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVS-Nrg~~s---IavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~ 187 (275)
....+.+||||++|-++ ..+.+. |.++|+ .+++++...-. +..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl---~tg~~l~d~i~----------------------------~~~-- 171 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDL---ETGKFLPDGIE----------------------------NPK-- 171 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEET---TTTEEEEEEEE----------------------------EEE--
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEEC---CCCcCcCCccc----------------------------ccc--
Confidence 34578999999987666 344333 556665 33555432211 111
Q ss_pred CCCceEEECCCCCEEEEEe
Q 023927 188 GGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 188 g~Pr~~~LSpDGk~LyVAN 206 (275)
...|+.++||+.||.+.
T Consensus 172 --~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 172 --FSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp --SEEEEECTTSSEEEEEE
T ss_pred --cceEEEeCCCCEEEEEE
Confidence 33489999999887765
No 260
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=67.84 E-value=30 Score=33.93 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=54.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
+..+.|.-|||||.+-...-=|-.|.||.+.. .+..++....+ +-
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~~~~~~~pK~----------------------------------~~ 136 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNT-QKGYLLPHPKT----------------------------------NV 136 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEecc-ceeEEeccccc----------------------------------Cc
Confidence 56689999999999998888899999999955 33444332222 13
Q ss_pred ceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEE
Q 023927 191 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 228 (275)
Q Consensus 191 r~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~ 228 (275)
...++.||||+.-.+ ++-|+..|=.+-+-.++++
T Consensus 137 kg~~f~~dg~f~ai~----sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 137 KGYAFHPDGQFCAIL----SRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred eeEEECCCCceeeee----ecccHHHHHHHHhhHHHHH
Confidence 478999999987555 4568777655533344444
No 261
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.48 E-value=9.7 Score=38.78 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 110 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 110 ~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+.....+.+.||||.|||-|+ +++.+|+...
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~ 250 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG--SELVVALLDK 250 (733)
T ss_pred ccchHhhEECCCCCEEEEecC--CeEEEEeecc
Confidence 344567999999999999998 7888888744
No 262
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=65.70 E-value=47 Score=32.96 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=41.5
Q ss_pred CcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC-CCCCeE
Q 023927 75 STMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVL 148 (275)
Q Consensus 75 stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~-~~~~~l 148 (275)
..|....+ .+|.|...++- +.|.. ...-|+.-||.-+-+++||--+++|++|||.. +.++.+
T Consensus 234 ~~I~lw~~-~~g~W~vd~~P------f~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 234 KGIHLWEP-STGSWKVDQRP------FTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cceEeeee-ccCceeecCcc------ccccc-----cchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 44444444 34788555442 22211 23458899999999999999999999999966 344444
No 263
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=65.62 E-value=50 Score=31.64 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=48.2
Q ss_pred CcCCCccccccCCccCCeEEEEECCC-CCeeEEEECCCCCccceEEEEEeCC--CC--CEEEEeeccCCcEEEEEeCCC-
Q 023927 12 FTKGFNLQHVSDGLYGRHLFVYSWPD-GELKQTLDLGNTGLIPLEIRFLHDP--SK--DIGFVGCALASTMVRFSKTQD- 85 (275)
Q Consensus 12 ~~~g~~~~~~~~g~~~d~I~v~d~~~-~k~~~~i~Lg~~G~gP~~v~f~f~P--~g--~~~YV~~eL~stV~~~~~~~~- 85 (275)
|-.|.+..+...+..+..|+|+|+++ ++++..++++....+.-.... .+. || .++|+. -+.++||+|.....
T Consensus 165 ~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~-~D~d~DG~~D~vYaG-Dl~GnlwR~dl~~~~ 242 (335)
T PF05567_consen 165 FGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVPGGSGGLSSPAV-VDSDGDGYVDRVYAG-DLGGNLWRFDLSSAN 242 (335)
T ss_dssp EE--BS-TT-------EEEEEEETTT---EEEEEEE--STT-EEEEEE-E-TTSSSEE-EEEEE-ETTSEEEEEE--TTS
T ss_pred EccCCCCCcccccCCCcEEEEEECCCCCceEEEEecCCCCccccccEE-EeccCCCeEEEEEEE-cCCCcEEEEECCCCC
Confidence 44555544433334567899999999 999998887532113333332 333 33 688976 67899999987532
Q ss_pred -CCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEe
Q 023927 86 -GSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN 129 (275)
Q Consensus 86 -G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSN 129 (275)
..|..+....- ..++. ..| ++...++++++|+..
T Consensus 243 ~~~~~~~~~~~g-~~PIt--------~aP-~v~~~~~~~~V~fGT 277 (335)
T PF05567_consen 243 PSSWSVRTIFSG-TQPIT--------AAP-AVVRDPDGRWVFFGT 277 (335)
T ss_dssp TT-GG-EESGGG--------------S---EEEE-TTSSEEEEE-
T ss_pred cccceeeecccC-cCCeE--------ecc-eEEecCCCCEEEEEe
Confidence 35655432110 01111 223 455677888777644
No 264
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.15 E-value=9.3 Score=37.49 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=28.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+-..+++|||-|||| +||..+.++++||+++
T Consensus 335 nwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYI-LSCADDKTLRVWDLKN 365 (406)
T ss_pred ceeeeeEEcCCCeEE-EEEecCCcEEEEEecc
Confidence 567899999999999 7999999999999966
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=64.65 E-value=1.2e+02 Score=28.31 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWIL 106 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~ 106 (275)
...++.||.++++.+=..+.+. +. .+ ...+.++|+..+ ++.|..+.. .+|+...+. .. ..+.
T Consensus 250 ~g~l~a~d~~tG~~~W~~~~~~----~~--~p--~~~~~~vyv~~~-~G~l~~~d~-~tG~~~W~~----~~--~~~~-- 311 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKRDASS----YQ--GP--AVDDNRLYVTDA-DGVVVALDR-RSGSELWKN----DE--LKYR-- 311 (377)
T ss_pred CCEEEEEECCCCcEEEeeccCC----cc--Cc--eEeCCEEEEECC-CCeEEEEEC-CCCcEEEcc----cc--ccCC--
Confidence 4567888888776654444321 11 11 235678888763 456666654 345321111 00 0110
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecc
Q 023927 107 PEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 156 (275)
Q Consensus 107 ~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG 156 (275)
..+...+ .|..||+.+. .+.|.+++. .+++++.+.++++
T Consensus 312 -----~~ssp~i--~g~~l~~~~~-~G~l~~~d~---~tG~~~~~~~~~~ 350 (377)
T TIGR03300 312 -----QLTAPAV--VGGYLVVGDF-EGYLHWLSR---EDGSFVARLKTDG 350 (377)
T ss_pred -----ccccCEE--ECCEEEEEeC-CCEEEEEEC---CCCCEEEEEEcCC
Confidence 0011122 4678999886 467888875 3477777777643
No 266
>PRK10115 protease 2; Provisional
Probab=63.74 E-value=2e+02 Score=30.30 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=19.9
Q ss_pred eEEEEcCCCCEE-EEEeCC----CCcEEEEEecCC
Q 023927 114 TDFLISLDDRFL-YFSNWL----HGDIRQYNIEDP 143 (275)
Q Consensus 114 adI~iSpDgrfL-YVSNrg----~~sIavfdI~~~ 143 (275)
..+..++|++.| |.+++. ...|..+++..+
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 458899999855 555632 257777777553
No 267
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=63.42 E-value=1.8e+02 Score=29.82 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=67.3
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
..|.....|++||...++.+.+--.|..| +-..+.| |.+...++++..+-|+-++.. .+|. .+.++.
T Consensus 222 ~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~---~~~~~~lvsgS~D~t~rvWd~-~sg~----C~~~l~---- 288 (537)
T KOG0274|consen 222 KSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAF---PSGGDKLVSGSTDKTERVWDC-STGE----CTHSLQ---- 288 (537)
T ss_pred EecCCCceeEEeecccceEEEeeccCCCC-CceeEEE---ecCCCEEEEEecCCcEEeEec-CCCc----EEEEec----
Confidence 56778888999999998887653344433 3444444 557788889888888888873 3332 222222
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeE
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 148 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~l 148 (275)
.+...+..---++++-+|--.+++|.||+|+.+....+
T Consensus 289 ---------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 289 ---------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred ---------CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEE
Confidence 23344444445556667755689999999975443333
No 268
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=62.26 E-value=53 Score=34.88 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=64.1
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
..|.-.|.+||+...+...++. +. -.+-+.++ ++|+|+++-.+|- +++|.++.... + ++.+ ++|
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~-gH-tdqIf~~A--WSpdGr~~AtVcK-Dg~~rVy~Prs-~----e~pv------~Eg 759 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLV-GH-TDQIFGIA--WSPDGRRIATVCK-DGTLRVYEPRS-R----EQPV------YEG 759 (1012)
T ss_pred hhccceeeeeehhhhhhhheec-cC-cCceeEEE--ECCCCcceeeeec-CceEEEeCCCC-C----CCcc------ccC
Confidence 5688999999999987754332 22 22455554 5999999888775 46676665321 0 1111 111
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCC---CcEEEEEe
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLH---GDIRQYNI 140 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~---~sIavfdI 140 (275)
. .+++...|-|..--|||+|.|+.... ..|.+|+-
T Consensus 760 ~--gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 760 K--GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred C--CCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 1 12556789999999999999998754 44556654
No 269
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=62.17 E-value=62 Score=31.65 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
++| +-..|.|+|+.+++....+- ..|..--+|+| ||+...+-+++--+-+|-.+.. +++ .-++.+. .+
T Consensus 110 ~~G-~~GvIrVid~~~~~~~~~~~--ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI-~~~----~Cv~VfG--G~ 177 (385)
T KOG1034|consen 110 AGG-YLGVIRVIDVVSGQCSKNYR--GHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNI-QTD----VCVAVFG--GV 177 (385)
T ss_pred eec-ceeEEEEEecchhhhcccee--ccCccchhhhc--CCCCCcEEEEecCCceEEEEec-cCC----eEEEEec--cc
Confidence 335 66779999999887655332 34667778887 9999877666555444443332 111 2233332 33
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+|.. ...-.|-+|+||+|+ +||-.+-+|-.|+++.
T Consensus 178 egHr-----deVLSvD~~~~gd~i-~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 178 EGHR-----DEVLSVDFSLDGDRI-ASCGMDHSLKLWRLNV 212 (385)
T ss_pred cccc-----CcEEEEEEcCCCCee-eccCCcceEEEEecCh
Confidence 3322 234567799999976 8999899999999963
No 270
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=62.04 E-value=56 Score=31.87 Aligned_cols=30 Identities=10% Similarity=0.270 Sum_probs=24.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 113 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
..++.++|-..-| +|.-.+++|-.||++.+
T Consensus 175 vn~l~FHPre~IL-iS~srD~tvKlFDfsK~ 204 (430)
T KOG0640|consen 175 VNDLDFHPRETIL-ISGSRDNTVKLFDFSKT 204 (430)
T ss_pred ccceeecchhheE-EeccCCCeEEEEecccH
Confidence 4688899988855 67777999999999765
No 271
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=61.80 E-value=1.7e+02 Score=28.96 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=9.8
Q ss_pred eEEECCCCCEEEEEe
Q 023927 192 MIQLSLDGKRLYVTN 206 (275)
Q Consensus 192 ~~~LSpDGk~LyVAN 206 (275)
+..+|||||+++-+.
T Consensus 355 hp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRS 369 (386)
T ss_dssp --EE-TTSSEEEEEE
T ss_pred CCccCCCCCEEEEEC
Confidence 368999999976655
No 272
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=61.54 E-value=1.1e+02 Score=30.45 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred CceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEE
Q 023927 190 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQI 230 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~ 230 (275)
||++++-|||-.|...+ | .++.++|+
T Consensus 369 ~~dV~v~~DGallv~~D--------~-------~~g~i~Rv 394 (399)
T COG2133 369 PRDVAVAPDGALLVLTD--------Q-------GDGRILRV 394 (399)
T ss_pred ccceEECCCCeEEEeec--------C-------CCCeEEEe
Confidence 99999999998555555 4 25588876
No 273
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=61.44 E-value=49 Score=31.28 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEE--EEEeCCCCCEEEEeeccC----CcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEI--RFLHDPSKDIGFVGCALA----STMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v--~f~f~P~g~~~YV~~eL~----stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
-.+|+.++.+.++.. .|.. |..+| ...++++++.+|..+--. ..|.+...+.. .....+.+..
T Consensus 259 ~~hly~~~~~~~~~~---~lT~---G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-----~~~~~LT~~~ 327 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPR---QLTS---GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-----GEPKCLTCED 327 (353)
T ss_dssp SEEEEEEETTSSEEE---ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-----TEEEESSTTS
T ss_pred CcEEEEEccccccee---cccc---CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-----CCeEeccCCC
Confidence 457777777766532 4533 33333 345688888777664431 12333322101 1122222211
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHG 133 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~ 133 (275)
+ .+ +.+.+||||+|+-.++.+.+
T Consensus 328 --~-------~~-~~~~~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 328 --G-------DH-YSASFSPDGKYYVDTYSGPD 350 (353)
T ss_dssp --S-------TT-EEEEE-TTSSEEEEEEESSS
T ss_pred --C-------Cc-eEEEECCCCCEEEEEEcCCC
Confidence 1 12 68999999999999988765
No 274
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=61.43 E-value=1.5e+02 Score=28.29 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=24.5
Q ss_pred ceeEEEEcCCCC----EEEEEeCCCCcEEEEEecCCCCCeE
Q 023927 112 LITDFLISLDDR----FLYFSNWLHGDIRQYNIEDPKNPVL 148 (275)
Q Consensus 112 ~~adI~iSpDgr----fLYVSNrg~~sIavfdI~~~~~~~l 148 (275)
.++.+.+..+-+ +++|+-| ++.|+||.+.+.+++++
T Consensus 154 ~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv 193 (364)
T COG4247 154 SAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKV 193 (364)
T ss_pred cceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceE
Confidence 445555544444 5666554 69999999988877765
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=60.59 E-value=97 Score=30.68 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=58.5
Q ss_pred EeCCCCCEEEEeeccCCcEEEEEeCCCC-CeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 59 LHDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 59 ~f~P~g~~~YV~~eL~stV~~~~~~~~G-~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
+.+|+++.++|..-- ....+|.++.+. .+...++..++ ..+.+|.+-.+....-|.-+-. ++-.
T Consensus 69 ~~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~-------------~~~~ai~~~~~~~sv~v~dkag-D~~~ 133 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVP-------------KRPTAISFIREDTSVLVADKAG-DVYS 133 (390)
T ss_pred ccCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecc-------------cCcceeeeeeccceEEEEeecC-Ccee
Confidence 458999988887543 333344443332 24444444443 4567888888888888888744 4455
Q ss_pred EEecC-C-CCCeE-EEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 138 YNIED-P-KNPVL-TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 138 fdI~~-~-~~~~l-v~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
|+|-. + +.+++ +|.+++ =-++++|||+++++-|.
T Consensus 134 ~di~s~~~~~~~~~lGhvSm-----------------------------------l~dVavS~D~~~IitaD 170 (390)
T KOG3914|consen 134 FDILSADSGRCEPILGHVSM-----------------------------------LLDVAVSPDDQFIITAD 170 (390)
T ss_pred eeeecccccCcchhhhhhhh-----------------------------------hheeeecCCCCEEEEec
Confidence 56533 2 22322 233222 23689999999988886
No 276
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=60.05 E-value=52 Score=35.97 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=71.5
Q ss_pred CCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEE
Q 023927 49 TGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFS 128 (275)
Q Consensus 49 ~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVS 128 (275)
++..|.+|.| +=..+.+|-.---+-+|.+-... | ..--++.. .+. .+|-.|+|..-+|-+|-+
T Consensus 1023 p~~IiVGidf--DC~e~mvyWtDv~g~SI~rasL~--G----~Ep~ti~n---~~L------~SPEGiAVDh~~Rn~ywt 1085 (1289)
T KOG1214|consen 1023 PGSIIVGIDF--DCRERMVYWTDVAGRSISRASLE--G----AEPETIVN---SGL------ISPEGIAVDHIRRNMYWT 1085 (1289)
T ss_pred ccceeeeeec--ccccceEEEeecCCCcccccccc--C----CCCceeec---ccC------CCccceeeeeccceeeee
Confidence 3566777665 77777777764444444433221 1 01111111 122 366789999999999999
Q ss_pred eCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCC
Q 023927 129 NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL 208 (275)
Q Consensus 129 Nrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl 208 (275)
.-.-+.|-+=.++...+..|+ .+ +. - .||.+++++=++.||.+.
T Consensus 1086 DS~lD~IevA~LdG~~rkvLf---~t-dL--------------------------V----NPR~iv~D~~rgnLYwtD-- 1129 (1289)
T KOG1214|consen 1086 DSVLDKIEVALLDGSERKVLF---YT-DL--------------------------V----NPRAIVVDPIRGNLYWTD-- 1129 (1289)
T ss_pred ccccchhheeecCCceeeEEE---ee-cc--------------------------c----CcceEEeecccCceeecc--
Confidence 888888888777443333331 11 10 1 299999999999999876
Q ss_pred CCCccccccccc
Q 023927 209 FSAWDCQFYPEL 220 (275)
Q Consensus 209 ~~~wd~Q~yp~~ 220 (275)
|..+. |++
T Consensus 1130 ---WnRen-PkI 1137 (1289)
T KOG1214|consen 1130 ---WNREN-PKI 1137 (1289)
T ss_pred ---ccccC-Ccc
Confidence 87775 554
No 277
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.92 E-value=1.7e+02 Score=28.24 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=66.4
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
+.|+|+.+.+|+..--..+|+-+.. +|++ ..+| |...+ .-|=.|.-.-+|+|.-+.-| ...+..
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~--~Gdl--irti--PL~g~---------~DpE~Ieyig~n~fvi~dER-~~~l~~ 154 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTK--EGDL--IRTI--PLTGF---------SDPETIEYIGGNQFVIVDER-DRALYL 154 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEec--CCce--EEEe--ccccc---------CChhHeEEecCCEEEEEehh-cceEEE
Confidence 5669999999999888777777764 3432 2222 22222 23346778889999877777 567888
Q ss_pred EEecCCCCCeE--E-EEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 138 YNIEDPKNPVL--T-GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 138 fdI~~~~~~~l--v-~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
|.++.. +..+ . .++++|..- +... |=-.+|-+|..++||||=
T Consensus 155 ~~vd~~-t~~~~~~~~~i~L~~~~-----------------------k~N~---GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 155 FTVDAD-TTVISAKVQKIPLGTTN-----------------------KKNK---GFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred EEEcCC-ccEEeccceEEeccccC-----------------------CCCc---CceeeecCCCCceEEEEE
Confidence 888543 2221 1 134443210 1011 334689999999999996
No 278
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=59.83 E-value=56 Score=34.09 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=72.5
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC--CCCeeEEEEEEecC
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ--DGSWNHEVAISVKS 98 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~--~G~~~~~~vi~i~~ 98 (275)
|+.|...-+|.|||.-..|++..|..|. -.--+.+.|+.+- +...-++++-+..|-+|.-+. .|.......+++-
T Consensus 65 L~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~t-nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~- 141 (758)
T KOG1310|consen 65 LASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYT-NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR- 141 (758)
T ss_pred EeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccC-CCeEEEeccCcceEEEEecccccccccccCccchhh-
Confidence 3557777899999999999999998875 3345667775543 455677777777777776531 1222111111111
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
-+.-. . ...--|+.-|++-..+-|+--+|.|+||||..|
T Consensus 142 -~~~ch--t---~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 142 -CWSCH--T---DRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred -hhhhh--h---hhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 00000 0 122357777888788889999999999999763
No 279
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=59.61 E-value=36 Score=37.11 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=45.6
Q ss_pred cCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCC
Q 023927 119 SLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLD 198 (275)
Q Consensus 119 SpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpD 198 (275)
+=..|-+||+.-. +.|++-|. +..+++.+..... ..-.. | .+|||
T Consensus 316 ~f~tkiAfv~~~~-~~L~~~D~-dG~n~~~ve~~~~----------------~~i~s--------------P---~~SPD 360 (912)
T TIGR02171 316 TYKAKLAFRNDVT-GNLAYIDY-TKGASRAVEIEDT----------------ISVYH--------------P---DISPD 360 (912)
T ss_pred cceeeEEEEEcCC-CeEEEEec-CCCCceEEEecCC----------------Cceec--------------C---cCCCC
Confidence 3467889999522 38888887 4355654311111 11111 3 58999
Q ss_pred CCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCe-eec
Q 023927 199 GKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM-AIN 242 (275)
Q Consensus 199 Gk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l-~~~ 242 (275)
|++|--+- .+ |.++....++..|+++...+| +|+
T Consensus 361 G~~vAY~t--------s~--e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 361 GKKVAFCT--------GI--EGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred CCEEEEEE--------ee--cCCCCCceEEEEehhccCCCceEee
Confidence 99987644 22 222245667888888776665 443
No 280
>PRK13616 lipoprotein LpqB; Provisional
Probab=58.18 E-value=2.4e+02 Score=29.37 Aligned_cols=66 Identities=11% Similarity=-0.016 Sum_probs=37.2
Q ss_pred cceEEEEEeCCCCCEEEEeeccCCcEEEE--EeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEe
Q 023927 52 IPLEIRFLHDPSKDIGFVGCALASTMVRF--SKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSN 129 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV~~eL~stV~~~--~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSN 129 (275)
....+++ +|||+++.++.+ ..|.+- ...++|.........+.+. ++..+.++.-..|++ |+|..
T Consensus 449 ~Issl~w--SpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~---------l~~~~~~l~W~~~~~-L~V~~ 514 (591)
T PRK13616 449 PISELQL--SRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPG---------LGDTAVSLDWRTGDS-LVVGR 514 (591)
T ss_pred CcCeEEE--CCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecc---------cCCccccceEecCCE-EEEEe
Confidence 4556555 999998888764 567663 3345564222222222211 223456777888888 55664
Q ss_pred CC
Q 023927 130 WL 131 (275)
Q Consensus 130 rg 131 (275)
.+
T Consensus 515 ~~ 516 (591)
T PRK13616 515 SD 516 (591)
T ss_pred cC
Confidence 43
No 281
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=57.59 E-value=70 Score=30.04 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCeEEEEECCCCCeeEEEECCCCCccceEE----EEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTGLIPLEI----RFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQ 102 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v----~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~ 102 (275)
.+.|.+||+++++++.++++..+ ||-+| .+....|..++|.. =-..+|.++.. +|+. .+.+.+......
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~eke--Gpngi~~~~~~~~~~Dsi~l~~~-~~~~~l~~~n~--~G~~--~~~~~~~~~~~~ 138 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKE--GPNGIGRPFGFFQNLDSIFLFNS-YAFPKLFLFNS--QGEV--LKKIDLEEEDLE 138 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSS--STTB-TT---EEESSSTTSEEEE-GGGTEEEEE-T--T--E--EEEEE---TTS-
T ss_pred cceEEEEECCCCceeeeeeeeeE--CCCCccccccceEcCCceEEEec-CCcceEEEEcC--CCeE--EEEEecccCccc
Confidence 48999999999999999998544 33322 23367888888865 12245666653 3433 444444433222
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeC
Q 023927 103 NWILPEMPGLITDFLISLDDRFLYFSNW 130 (275)
Q Consensus 103 g~~~~~~~~~~adI~iSpDgrfLYVSNr 130 (275)
.+... .+.....++...|+. +|.+-+
T Consensus 139 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 164 (333)
T PF13970_consen 139 FEPSE-FPSFSNSPIFIKDNK-LYFSQP 164 (333)
T ss_dssp -------BTTTTB--EEETTE-EEEE--
T ss_pred ccccc-cccccccceEeCCCe-EEEeee
Confidence 22111 122224555667776 566654
No 282
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=57.03 E-value=2e+02 Score=29.49 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=14.9
Q ss_pred CceeEEEEcCCCCEEEEEeCC
Q 023927 111 GLITDFLISLDDRFLYFSNWL 131 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg 131 (275)
+.|=-|.++++|+ ||+..=+
T Consensus 436 ~sPDNL~~d~~G~-LwI~eD~ 455 (524)
T PF05787_consen 436 ASPDNLAFDPDGN-LWIQEDG 455 (524)
T ss_pred CCCCceEECCCCC-EEEEeCC
Confidence 4667889999999 6666543
No 283
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=56.87 E-value=1.6e+02 Score=34.02 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=45.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEec-ceeecCCceeeecCCCC--CCCCCCccccCcccC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG-GLFRKGSPVVAVTDDGQ--PYQSDVPEVQGHRLR 187 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~g-G~~~~~~~~~v~~~~~~--~~~~~~~~~~G~~~~ 187 (275)
++-+-|++||=+--||||.-.+-.|....--.+..++..-.+-.| |.. .-+-+.-|+|..+ +.+. .
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~-Clp~desCGDGalA~dA~L-------~--- 475 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEV-CLPADESCGDGALAQDAQL-------I--- 475 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcC-ccccccccCcchhccccee-------c---
Confidence 677899999988889999987766544332223333333333222 110 0011122333111 1111 1
Q ss_pred CCCceEEECCCCCEEEEEe
Q 023927 188 GGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 188 g~Pr~~~LSpDGk~LyVAN 206 (275)
-|+.++++.+|- ||.|.
T Consensus 476 -~PkGIa~dk~g~-lYfaD 492 (1899)
T KOG4659|consen 476 -FPKGIAFDKMGN-LYFAD 492 (1899)
T ss_pred -cCCceeEccCCc-EEEec
Confidence 399999999996 77765
No 284
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=56.30 E-value=2.2e+02 Score=28.52 Aligned_cols=99 Identities=6% Similarity=0.065 Sum_probs=68.6
Q ss_pred cCCeEEEEECCC--CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 26 YGRHLFVYSWPD--GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~--~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
.+.++.+||+.+ .+....++- -.++++- ..|+|-..++...+--+++|..+... .+.. ...++ ++
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~a---h~~~vn~-~~fnp~~~~ilAT~S~D~tV~LwDlR---nL~~-~lh~~-----e~ 314 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKA---HSAEVNC-VAFNPFNEFILATGSADKTVALWDLR---NLNK-PLHTF-----EG 314 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccc---cCCceeE-EEeCCCCCceEEeccCCCcEEEeech---hccc-Cceec-----cC
Confidence 568899999995 333322222 2366653 45699999999998888999988752 1222 11122 21
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
. .....-+-.||.-.-+.+|.--++.+-+||++.
T Consensus 315 H-----~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 315 H-----EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred C-----CcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 1 134467889999999999999999999999965
No 285
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.91 E-value=1.2e+02 Score=31.48 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=67.4
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec------cCCcEEEEEeCCCCC----eeEE
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA------LASTMVRFSKTQDGS----WNHE 91 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e------L~stV~~~~~~~~G~----~~~~ 91 (275)
-++...+.||-.|+..+|++.+.++..+ .+. + -+.|+.+.+=...| -++.|+++....+|. |...
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~m--v-~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD--INM--V-DITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC--cce--e-eccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 4556678999999999999999988643 122 2 23777776655544 235566665433333 2221
Q ss_pred EEE-----------------EecCcc--c---------cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 92 VAI-----------------SVKSLK--V---------QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 92 ~vi-----------------~i~~~~--~---------~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
+.. .+...+ . .-.++|.+|.....|-+|.||+||-++|-. .+-..++
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~t 499 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLIDT 499 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEEE
Confidence 111 111000 0 013455677888889999999999999963 4555554
No 286
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.57 E-value=17 Score=38.46 Aligned_cols=33 Identities=36% Similarity=0.771 Sum_probs=25.3
Q ss_pred cCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCe
Q 023927 186 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 239 (275)
Q Consensus 186 ~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l 239 (275)
+.||| +++|++|+.||.++ |+.+-.+|+ .||..
T Consensus 20 YtGG~--~~~s~nG~~L~t~~-----------------~d~Vi~idv--~t~~~ 52 (775)
T KOG0319|consen 20 YTGGP--VAWSSNGQHLYTAC-----------------GDRVIIIDV--ATGSI 52 (775)
T ss_pred ecCCc--eeECCCCCEEEEec-----------------CceEEEEEc--cCCce
Confidence 45667 89999999999998 556666766 66665
No 287
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.91 E-value=1.1e+02 Score=32.97 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=67.9
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
|..|--...|..||+...+-+++.-- .-..-|-|.| +|.-.+-|++.-=++.|-.+....-..|..+.++.-
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~--nSESiRDV~f--sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~---- 220 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRS--NSESIRDVKF--SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN---- 220 (839)
T ss_pred EEecCCCceEEEEeeecccccccccc--cchhhhceee--ccCCCceEEEecCCceEEEeeccCchhHHHHhhccc----
Confidence 34555667899999998877665432 2336788887 777666666644444444443221122222222211
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
+...-+-.+|++-|| +++-.+..|.+|+..++ .++..-.|.+
T Consensus 221 ----------GpV~c~nwhPnr~~l-ATGGRDK~vkiWd~t~~-~~~~~~tInT 262 (839)
T KOG0269|consen 221 ----------GPVLCLNWHPNREWL-ATGGRDKMVKIWDMTDS-RAKPKHTINT 262 (839)
T ss_pred ----------CceEEEeecCCCcee-eecCCCccEEEEeccCC-CccceeEEee
Confidence 123466789966666 77777899999999764 3444444544
No 288
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=53.65 E-value=66 Score=33.88 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=73.7
Q ss_pred cceEEEEEeCCCCCE-EEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeC
Q 023927 52 IPLEIRFLHDPSKDI-GFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNW 130 (275)
Q Consensus 52 gP~~v~f~f~P~g~~-~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNr 130 (275)
.|+...|.-+|+.+| +||.+| ++.|..|.... -.+..++ ..+.+|... -+..-|+.--| |+-+.|+--
T Consensus 51 pPf~~sFs~~~n~eHiLavadE-~G~i~l~dt~~-~~fr~ee------~~lk~~~aH--~nAifDl~wap-ge~~lVsas 119 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADE-DGGIILFDTKS-IVFRLEE------RQLKKPLAH--KNAIFDLKWAP-GESLLVSAS 119 (720)
T ss_pred CCccccccCCCCccceEEEecC-CCceeeecchh-hhcchhh------hhhcccccc--cceeEeeccCC-CceeEEEcc
Confidence 566677877787655 555555 46676664321 1121000 011111100 14566888888 999999999
Q ss_pred CCCcEEEEEecCCCCCeEEEE-EEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCCC
Q 023927 131 LHGDIRQYNIEDPKNPVLTGQ-IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLF 209 (275)
Q Consensus 131 g~~sIavfdI~~~~~~~lv~~-v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~ 209 (275)
|+-+|..||+.. .+++|. +.. | .+ |.=+.+++.|+..-+||+-.
T Consensus 120 GDsT~r~Wdvk~---s~l~G~~~~~-G---------------------------H~--~SvkS~cf~~~n~~vF~tGg-- 164 (720)
T KOG0321|consen 120 GDSTIRPWDVKT---SRLVGGRLNL-G---------------------------HT--GSVKSECFMPTNPAVFCTGG-- 164 (720)
T ss_pred CCceeeeeeecc---ceeecceeec-c---------------------------cc--cccchhhhccCCCcceeecc--
Confidence 999999999954 445432 222 1 11 22557899999999999972
Q ss_pred CCcccccccccccCCcEEEE
Q 023927 210 SAWDCQFYPELKEKGSHMLQ 229 (275)
Q Consensus 210 ~~wd~Q~yp~~~~~~~~~~~ 229 (275)
.||..+++
T Consensus 165 ------------RDg~illW 172 (720)
T KOG0321|consen 165 ------------RDGEILLW 172 (720)
T ss_pred ------------CCCcEEEE
Confidence 67877775
No 289
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=53.54 E-value=3.3e+02 Score=29.58 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=61.5
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEE---eCCCCCEEEEeeccCCcEEEEEeCC--CCCeeEEEEEEecCcc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFL---HDPSKDIGFVGCALASTMVRFSKTQ--DGSWNHEVAISVKSLK 100 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~---f~P~g~~~YV~~eL~stV~~~~~~~--~G~~~~~~vi~i~~~~ 100 (275)
....|.+||+....++.+++.. .|.|..+. |-.....+|++.|--+.+..+..+. .+.+.........+.+
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~----~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d 155 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNN----LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGD 155 (792)
T ss_pred cCccEEEecCCCcEEEEEEecC----CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchh
Confidence 3567999999999999988875 34443321 1222357788887766666665432 2323222222222222
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
+.-. + ..+.-|+.++-|.|-|+.- ..++..|.+
T Consensus 156 ~~~~----~-~~~~~I~~~~~ge~~~i~~--~~~~~~~~v 188 (792)
T KOG1963|consen 156 FLKE----H-QEPKSIVDNNSGEFKGIVH--MCKIHIYFV 188 (792)
T ss_pred hhhh----h-cCCccEEEcCCceEEEEEE--eeeEEEEEe
Confidence 2211 1 1267889999999888763 356777776
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=52.36 E-value=72 Score=31.58 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 112 LITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
...|+++|||++|+--|.| ++.|++-.-
T Consensus 153 ml~dVavS~D~~~IitaDR-DEkIRvs~y 180 (390)
T KOG3914|consen 153 MLLDVAVSPDDQFIITADR-DEKIRVSRY 180 (390)
T ss_pred hhheeeecCCCCEEEEecC-CceEEEEec
Confidence 5689999999999999998 456665443
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=51.90 E-value=1.2e+02 Score=28.87 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=37.1
Q ss_pred EEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEE
Q 023927 116 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL 195 (275)
Q Consensus 116 I~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~L 195 (275)
++++.|||.|=|- .+++--++-+..+=...+++..+ |+| +.|+ =|-++.
T Consensus 3 ~~~~~~Gk~lAi~---qd~~iEiRsa~Ddf~si~~kcqV----pkD-----------------~~PQ-------WRkl~W 51 (282)
T PF15492_consen 3 LALSSDGKLLAIL---QDQCIEIRSAKDDFSSIIGKCQV----PKD-----------------PNPQ-------WRKLAW 51 (282)
T ss_pred eeecCCCcEEEEE---eccEEEEEeccCCchheeEEEec----CCC-----------------CCch-------heEEEE
Confidence 6789999988665 45555555433332344454433 332 1111 256999
Q ss_pred CCCCCEEEEEe
Q 023927 196 SLDGKRLYVTN 206 (275)
Q Consensus 196 SpDGk~LyVAN 206 (275)
|||+..|-.|+
T Consensus 52 SpD~tlLa~a~ 62 (282)
T PF15492_consen 52 SPDCTLLAYAE 62 (282)
T ss_pred CCCCcEEEEEc
Confidence 99999999998
No 292
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.82 E-value=1.5e+02 Score=29.88 Aligned_cols=61 Identities=7% Similarity=0.014 Sum_probs=43.3
Q ss_pred CCccCCeEEEEECCCC-CeeEEEECCCCCc------------cceE----EEEEeCCCCCEEEEeeccCCcEEEEEeC
Q 023927 23 DGLYGRHLFVYSWPDG-ELKQTLDLGNTGL------------IPLE----IRFLHDPSKDIGFVGCALASTMVRFSKT 83 (275)
Q Consensus 23 ~g~~~d~I~v~d~~~~-k~~~~i~Lg~~G~------------gP~~----v~f~f~P~g~~~YV~~eL~stV~~~~~~ 83 (275)
-|-+...|.|||++-. .+++.+.||.-.+ +--| +.++++-+-+.+-+++-.+.||.++..+
T Consensus 197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~ 274 (463)
T KOG0270|consen 197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD 274 (463)
T ss_pred EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC
Confidence 3778889999999975 6666777762110 0011 1355678888899999999999999864
No 293
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=51.26 E-value=2.6e+02 Score=27.85 Aligned_cols=105 Identities=8% Similarity=-0.015 Sum_probs=60.0
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC-CCCCee-------EEEEEEecCc
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT-QDGSWN-------HEVAISVKSL 99 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~-~~G~~~-------~~~vi~i~~~ 99 (275)
.--.+|............++. | |--.-..+|.|+++..++--+..|..++.+ +++.+. ..-++.+..-
T Consensus 260 avfrlw~e~q~wt~erw~lgs---g-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGS---G-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ceeeeehhcccceecceeccC---C-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 334455444443333444543 3 222234699999998888888888888765 333222 2222222211
Q ss_pred cc-cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 023927 100 KV-QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 138 (275)
Q Consensus 100 ~~-~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavf 138 (275)
.. .|.. -+.+.+--|+..|.|.||-|+-.+.+-|..|
T Consensus 336 ti~ag~~--l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 336 TICAGQR--LCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred hhhcCcc--cccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 11 1110 1345667899999999999999887744433
No 294
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=50.23 E-value=2.2e+02 Score=29.19 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=66.1
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccc-eEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIP-LEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP-~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
-..++.+||..++...|.+.+-. +| +-|.+ ...--|+++--++.|.|+..+++. |.+++.|.
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s---~~~lDVdW----~~~~~F~ts~td~~i~V~kv~~~~----------P~~t~~GH 358 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHS---APALDVDW----QSNDEFATSSTDGCIHVCKVGEDR----------PVKTFIGH 358 (524)
T ss_pred CCccEEEEeccCceEEEeeeecc---CCccceEE----ecCceEeecCCCceEEEEEecCCC----------cceeeecc
Confidence 45678899999998888887744 55 55554 233457888887888888765432 22333442
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
. +...+|...|-|. |.+||-.+.++..|...+
T Consensus 359 ~-----g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 359 H-----GEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred c-----CceEEEEECCCCc-eEEEecCCCeeEeeecCC
Confidence 1 5678999999999 558888889999998654
No 295
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.43 E-value=1.6e+02 Score=28.44 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=35.2
Q ss_pred EEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecc
Q 023927 93 AISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 156 (275)
Q Consensus 93 vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG 156 (275)
.+++..+++.|. .+..+++-.+||.|+||+..-..-.|.-.+ . .+.++.++++-|
T Consensus 73 ~~~i~akpi~g~-----~~nvS~LTynp~~rtLFav~n~p~~iVElt--~--~GdlirtiPL~g 127 (316)
T COG3204 73 RARIDAKPILGE-----TANVSSLTYNPDTRTLFAVTNKPAAIVELT--K--EGDLIRTIPLTG 127 (316)
T ss_pred eEEEeccccccc-----cccccceeeCCCcceEEEecCCCceEEEEe--c--CCceEEEecccc
Confidence 344554444443 144789999999999998755444444333 2 467888887744
No 296
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=48.68 E-value=53 Score=32.40 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=46.7
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP 190 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~P 190 (275)
..|+.|.+|||+.|+-++--.-..|..|=|+.+..++- ++.+ +.+-|-|
T Consensus 219 ~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~--EvFa-----------------------------~~LPG~P 267 (376)
T KOG1520|consen 219 YFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTS--EVFA-----------------------------EGLPGYP 267 (376)
T ss_pred cccccccCCCCCCEEEEEeeccceeeeeEecCCccCch--hhHh-----------------------------hcCCCCC
Confidence 36789999999999999998888999999966532211 1121 1123459
Q ss_pred ceEEECCCCCEEEEE
Q 023927 191 QMIQLSLDGKRLYVT 205 (275)
Q Consensus 191 r~~~LSpDGk~LyVA 205 (275)
-|+..+.+|.+...-
T Consensus 268 DNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 268 DNIRRDSTGHFWVAL 282 (376)
T ss_pred cceeECCCCCEEEEE
Confidence 999999999876655
No 297
>KOG4328 consensus WD40 protein [Function unknown]
Probab=48.51 E-value=3.1e+02 Score=27.93 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=65.9
Q ss_pred ccCCccCCeEEEEECCC-CCeeEEEECCCCCccceEEEEEeCCCC-CEEEEeeccCCcEEEEEe----------------
Q 023927 21 VSDGLYGRHLFVYSWPD-GELKQTLDLGNTGLIPLEIRFLHDPSK-DIGFVGCALASTMVRFSK---------------- 82 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~-~k~~~~i~Lg~~G~gP~~v~f~f~P~g-~~~YV~~eL~stV~~~~~---------------- 82 (275)
+++|-.+.+|-+|++.. ++-...+.++...++|.. .+.|+|.. .++|.+ -.+++|=..+.
T Consensus 203 va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs-~l~F~P~n~s~i~ss-SyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 203 VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVS-GLKFSPANTSQIYSS-SYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred EEEccCCCcEEEEecCCCCCccCceEEeccCCcccc-ceEecCCChhheeee-ccCceeeeeeecchhhHHHhhcCccce
Confidence 35677888999999953 344445566555556663 23347754 444433 22232211111
Q ss_pred -----C---CC------CCeeEEEEEEecCcc--ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 83 -----T---QD------GSWNHEVAISVKSLK--VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 83 -----~---~~------G~~~~~~vi~i~~~~--~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+ ++ +.|..--++.+-..+ ++.+.+.++ ....|++.|--.++.+++-.+++..+||...
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCCCCchheeecccCcceeeeehhh
Confidence 0 11 122222222222111 222222222 6788999999999999999999999999855
No 298
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=47.35 E-value=1.2e+02 Score=30.64 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=46.7
Q ss_pred eEEECCCCCEEEEEeCCCCC----cccccccccccCCcEEEEEEeeCCCCCeeeccceeEecCCCCCCCcceeeeecCCC
Q 023927 192 MIQLSLDGKRLYVTNSLFSA----WDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG 267 (275)
Q Consensus 192 ~~~LSpDGk~LyVANsl~~~----wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~~~~~f~vdf~~~~~g~~~~h~~r~~gg 267 (275)
.+..+.+|. +||=..-+.+ +-.|. +.-+.++|| .+|...+|++++.|+.+..+| .....|-|-|+
T Consensus 279 ~i~~~enGD-vYvfS~s~a~~~~~~~~~s-----tkPSGilRI----k~G~teFD~~Yffnle~~sgg-~~~~~~~yIG~ 347 (435)
T PF14298_consen 279 GIWKDENGD-VYVFSPSYAKTMSDGKSQS-----TKPSGILRI----KKGTTEFDKSYFFNLEAKSGG-YKFFRVWYIGN 347 (435)
T ss_pred eeeEeCCCC-EEEEcCccccccccccccc-----CCccEEEEE----CCCCcccCcceEeeeecccCC-cceEEEEEecC
Confidence 456788888 6654333332 22343 456788988 568889999999999998888 55666777776
Q ss_pred C
Q 023927 268 D 268 (275)
Q Consensus 268 d 268 (275)
+
T Consensus 348 ~ 348 (435)
T PF14298_consen 348 N 348 (435)
T ss_pred C
Confidence 5
No 299
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=46.64 E-value=3.4e+02 Score=27.81 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 61 DPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 61 ~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
+|+....-+.+..+|+|-.+.- ..| .++.++- +.. .-.+++..||||||| +|--.++.|..|.+
T Consensus 418 n~~~~~~l~sas~dstV~lwdv-~~g----v~i~~f~-kH~---------~pVysvafS~~g~yl-AsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDV-ESG----VPIHTLM-KHQ---------EPVYSVAFSPNGRYL-ASGSLDGCVHIWST 481 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEc-cCC----ceeEeec-cCC---------CceEEEEecCCCcEE-EecCCCCeeEeccc
Confidence 5666666666667777766653 222 1222221 111 345899999999988 56666889999998
Q ss_pred cCCCCCeEEEEE-EecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 141 EDPKNPVLTGQI-WVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 141 ~~~~~~~lv~~v-~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
.. .+++... ..+ +=..++.+-+|..|-++=
T Consensus 482 ~~---~~l~~s~~~~~---------------------------------~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 482 KT---GKLVKSYQGTG---------------------------------GIFELCWNAAGDKLGACA 512 (524)
T ss_pred cc---hheeEeecCCC---------------------------------eEEEEEEcCCCCEEEEEe
Confidence 33 5554322 111 235788999998777664
No 300
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=46.49 E-value=17 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=15.3
Q ss_pred ceEEECCCCCEEEEEeCCCCCc
Q 023927 191 QMIQLSLDGKRLYVTNSLFSAW 212 (275)
Q Consensus 191 r~~~LSpDGk~LyVANsl~~~w 212 (275)
.-+..|.||+|+||-...+.-|
T Consensus 30 ~i~H~S~D~~W~fV~t~~~~GW 51 (54)
T PF12913_consen 30 YILHTSRDGAWAFVQTPFYSGW 51 (54)
T ss_dssp EEEEE-TTSSEEEEE-SS-EEE
T ss_pred EEEEECCCCCEEEEecCCeeEe
Confidence 3456799999999999777766
No 301
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=46.29 E-value=1.2e+02 Score=30.56 Aligned_cols=95 Identities=11% Similarity=0.182 Sum_probs=61.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
....|.+||+.-.|... .|...|.-++.+.+ ||....+++.+-= +.+.+.....|. .+.++- +.
T Consensus 200 dDg~ikiWdf~~~kee~--vL~GHgwdVksvdW--HP~kgLiasgskD--nlVKlWDprSg~----cl~tlh-----~H- 263 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEER--VLRGHGWDVKSVDW--HPTKGLIASGSKD--NLVKLWDPRSGS----CLATLH-----GH- 263 (464)
T ss_pred CCCeEEEEeccCCchhh--eeccCCCCcceecc--CCccceeEEccCC--ceeEeecCCCcc----hhhhhh-----hc-
Confidence 45789999998765433 23456778887776 9999877776332 233333222221 111111 11
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
.+...++.+++++.||-...+.+ ++++|||.
T Consensus 264 ----KntVl~~~f~~n~N~Llt~skD~-~~kv~DiR 294 (464)
T KOG0284|consen 264 ----KNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIR 294 (464)
T ss_pred ----cceEEEEEEcCCCCeeEEccCCc-eEEEEehh
Confidence 15667899999999998888866 89999997
No 302
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=45.93 E-value=1e+02 Score=29.55 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=24.7
Q ss_pred EEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 023927 117 LISLDDRFLYFSNWLHGDIRQYNIEDPKNP 146 (275)
Q Consensus 117 ~iSpDgrfLYVSNrg~~sIavfdI~~~~~~ 146 (275)
.+|-+|+|.|.|.+-+-.-++|=|.+|++.
T Consensus 63 m~s~~G~f~f~a~~pq~~Ca~y~iaePd~~ 92 (311)
T PF05428_consen 63 MLSEEGQFTFTASRPQLVCAAYFIAEPDEL 92 (311)
T ss_pred eeccCceEEEecCCCCceeEEEEEeCCCeE
Confidence 378899999999988888888998887643
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.92 E-value=4e+02 Score=28.44 Aligned_cols=109 Identities=16% Similarity=0.262 Sum_probs=75.1
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEE-EeCCCCCeeEEEEEEecCcc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRF-SKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~-~~~~~G~~~~~~vi~i~~~~ 100 (275)
+.|...-+|.||++.+...+.++.-- ..=-|.|+. ||..+ ||...-+.-.+.+ .+ ++.|.-.|+.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH--~DyIR~iav--HPt~P--~vLtsSDDm~iKlW~w--e~~wa~~qtfe----- 137 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAH--SDYIRSIAV--HPTLP--YVLTSSDDMTIKLWDW--ENEWACEQTFE----- 137 (794)
T ss_pred EEecCCceEEEEecccceeeEEeecc--ccceeeeee--cCCCC--eEEecCCccEEEEeec--cCceeeeeEEc-----
Confidence 45666778999999998766655542 223565554 99999 4554444444444 33 34788777753
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC-CCeEEE
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK-NPVLTG 150 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~-~~~lv~ 150 (275)
|.. -....|++.|.+.--|+|+-.+.+|-||.+..+. +-+|.+
T Consensus 138 --GH~-----HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g 181 (794)
T KOG0276|consen 138 --GHE-----HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG 181 (794)
T ss_pred --Ccc-----eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence 321 3467999999999999999999999999996652 344443
No 304
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.86 E-value=1.3e+02 Score=29.94 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=50.7
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ 137 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav 137 (275)
|..+++|+++=|+.- ++.|.++.- ...|.+.+-++... ...+++.+|||-|++ +|--..+.+++
T Consensus 287 l~VS~dGkf~AlGT~-dGsVai~~~------~~lq~~~~vk~aH~--------~~VT~ltF~Pdsr~~-~svSs~~~~~v 350 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTM-DGSVAIYDA------KSLQRLQYVKEAHL--------GFVTGLTFSPDSRYL-ASVSSDNEAAV 350 (398)
T ss_pred EEEcCCCcEEEEecc-CCcEEEEEe------ceeeeeEeehhhhe--------eeeeeEEEcCCcCcc-cccccCCceeE
Confidence 667999998887765 888888863 22355544444322 367899999999988 66777889999
Q ss_pred EEecC
Q 023927 138 YNIED 142 (275)
Q Consensus 138 fdI~~ 142 (275)
+.|.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 99855
No 305
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.33 E-value=67 Score=32.13 Aligned_cols=50 Identities=10% Similarity=0.255 Sum_probs=32.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT 83 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~ 83 (275)
..+.|.+|||.+++++.++++. ..+.|.+ ++++.++=+.++ .++.++.++
T Consensus 124 ~~~~i~~yDw~~~~~i~~i~v~----~vk~V~W--s~~g~~val~t~--~~i~il~~~ 173 (443)
T PF04053_consen 124 SSDFICFYDWETGKLIRRIDVS----AVKYVIW--SDDGELVALVTK--DSIYILKYN 173 (443)
T ss_dssp ETTEEEEE-TTT--EEEEESS-----E-EEEEE---TTSSEEEEE-S---SEEEEEE-
T ss_pred CCCCEEEEEhhHcceeeEEecC----CCcEEEE--ECCCCEEEEEeC--CeEEEEEec
Confidence 3446999999999999999984 2477766 999998877765 577777663
No 306
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.26 E-value=39 Score=34.31 Aligned_cols=100 Identities=12% Similarity=0.243 Sum_probs=58.3
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
++.....-++.-|++.++++..+..+. |+..+ +..+|-....-++.. .++|+.+..... +..+.+..
T Consensus 225 ~~~~~~G~L~Y~DVS~GklVa~~~t~~---G~~~v-m~qNP~NaVih~Ghs-nGtVSlWSP~sk-----ePLvKiLc--- 291 (545)
T KOG1272|consen 225 VAASEAGFLKYQDVSTGKLVASIRTGA---GRTDV-MKQNPYNAVIHLGHS-NGTVSLWSPNSK-----EPLVKILC--- 291 (545)
T ss_pred eecccCCceEEEeechhhhhHHHHccC---Cccch-hhcCCccceEEEcCC-CceEEecCCCCc-----chHHHHHh---
Confidence 333355567788888888877666543 55553 434554443333322 355555543210 01111111
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
-....++|+|.++|+|+ ++.-.+..|.+||+..
T Consensus 292 -------H~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 292 -------HRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRN 324 (545)
T ss_pred -------cCCCcceEEECCCCcEE-eecccccceeEeeecc
Confidence 01344799999999988 5666688999999955
No 307
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=44.58 E-value=2e+02 Score=31.06 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.6
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
+|-+++..-.|.+|||+. +|.-.-.+|+|......+
T Consensus 288 LPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccc
Confidence 344667888999999998 677777799999988744
No 308
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=43.65 E-value=1.8e+02 Score=27.29 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred ECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC-----CCCeeEEEEEEecCccccccccCC
Q 023927 34 SWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ-----DGSWNHEVAISVKSLKVQNWILPE 108 (275)
Q Consensus 34 d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~-----~G~~~~~~vi~i~~~~~~g~~~~~ 108 (275)
|-..++....+.+-++-+.-|.+.| ||+|+ +|.++-.+-+.-++.|.+ .+.-+++|--++.-+.-.-..
T Consensus 16 dd~~k~~f~~i~~l~dsqairav~f--hp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--- 89 (350)
T KOG0641|consen 16 DDKEKKHFEAINILEDSQAIRAVAF--HPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--- 89 (350)
T ss_pred ccccccceEEEEEecchhheeeEEe--cCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC---
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 109 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 109 ~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
+..+-...||+|. |.++.-++..|-+...+..
T Consensus 90 --gsiyc~~ws~~ge-liatgsndk~ik~l~fn~d 121 (350)
T KOG0641|consen 90 --GSIYCTAWSPCGE-LIATGSNDKTIKVLPFNAD 121 (350)
T ss_pred --ccEEEEEecCccC-eEEecCCCceEEEEecccc
No 309
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=42.62 E-value=3.1e+02 Score=30.36 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=55.7
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeecc-CCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCAL-ASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL-~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
..+.+.+||+......+.+.-+. -.++--..+.--..+-+|+.+.. .+.|+++...++. ..+ ...|.
T Consensus 107 ~~ns~~i~d~~~~~~~~~i~~~e--r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p~------~l~GH 174 (967)
T KOG0974|consen 107 SRNSLLIRDSKNSSVLSKIQSDE--RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----KPI------RLKGH 174 (967)
T ss_pred cCceEEEEecccCceehhcCCCc--eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----Ccc------eeccc
Confidence 56788888888765544322111 11111111112233445555443 2556665442111 111 11222
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
.+.+-+|..|.|||++ +|.-.+-+|+.|+|++.
T Consensus 175 -----eG~iF~i~~s~dg~~i-~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 175 -----EGSIFSIVTSLDGRYI-ASVSDDRSIRLWPIDSR 207 (967)
T ss_pred -----CCceEEEEEccCCcEE-EEEecCcceeeeecccc
Confidence 2678999999999988 78888999999999663
No 310
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=42.52 E-value=11 Score=23.75 Aligned_cols=11 Identities=64% Similarity=1.153 Sum_probs=9.9
Q ss_pred eecCCCCcCcc
Q 023927 262 MRYPGGDCTSD 272 (275)
Q Consensus 262 ~r~~ggd~~sd 272 (275)
-||+|--||||
T Consensus 3 C~~nGqQCtSD 13 (31)
T PF08116_consen 3 CRYNGQQCTSD 13 (31)
T ss_pred cccCccccCcC
Confidence 38999999999
No 311
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.13 E-value=1.7e+02 Score=27.74 Aligned_cols=108 Identities=11% Similarity=0.192 Sum_probs=70.3
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCC-CCCEEEEeeccCCcEEEEEeCCC-CCeeEEEEEEecC
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDP-SKDIGFVGCALASTMVRFSKTQD-GSWNHEVAISVKS 98 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P-~g~~~YV~~eL~stV~~~~~~~~-G~~~~~~vi~i~~ 98 (275)
++.|--.+.|.||+++.+..+....|...-.=-|.++++.+- -.+.--++|-.+.+|+.+..+++ +.|+....-+
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--- 254 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--- 254 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc---
Confidence 555557788999999998544433343222335666663333 24556677888999999987643 4564322211
Q ss_pred ccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 99 LKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 99 ~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
| +....-+..|+.|.+|=||. |+|.|.+|.=+-
T Consensus 255 --f--------~~~~w~vSWS~sGn~LaVs~-GdNkvtlwke~~ 287 (299)
T KOG1332|consen 255 --F--------PDVVWRVSWSLSGNILAVSG-GDNKVTLWKENV 287 (299)
T ss_pred --C--------CcceEEEEEeccccEEEEec-CCcEEEEEEeCC
Confidence 1 13446788999999998886 588999998643
No 312
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=42.05 E-value=51 Score=27.76 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=23.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeE
Q 023927 113 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL 148 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~l 148 (275)
+--....+|-+-||++.+|+++|+.|.+.+. .+.+
T Consensus 13 ~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~-~p~l 47 (136)
T PF08954_consen 13 VLMPFYDEDTNLLYLAGKGDGNIRYYEVSDE-SPYL 47 (136)
T ss_dssp -EEEEE-TTT-EEEEEETT-S-EEEEEE-SS-TTSE
T ss_pred eeEeeEcCCCCEEEEEeccCcEEEEEEEcCC-CCce
Confidence 3455678999999999999999999999663 4555
No 313
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=41.90 E-value=1.8e+02 Score=29.09 Aligned_cols=110 Identities=5% Similarity=0.071 Sum_probs=74.2
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEE----EEec
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVA----ISVK 97 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~v----i~i~ 97 (275)
+.|-...+|.+||+..-+.- -..+......-+.|-| +|....+..++..+..+.++.... +..+|. -.-+
T Consensus 289 AT~S~D~tV~LwDlRnL~~~-lh~~e~H~dev~~V~W--SPh~etvLASSg~D~rl~vWDls~---ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKP-LHTFEGHEDEVFQVEW--SPHNETVLASSGTDRRLNVWDLSR---IGEEQSPEDAEDGP 362 (422)
T ss_pred EeccCCCcEEEeechhcccC-ceeccCCCcceEEEEe--CCCCCceeEecccCCcEEEEeccc---cccccChhhhccCC
Confidence 34556788999999764321 1223223334555555 999999999999999999887642 222322 2223
Q ss_pred Ccc-cc--ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 98 SLK-VQ--NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 98 ~~~-~~--g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
|+- |. |.. ...+|+...|...++-+|-...|.+-+|+.++
T Consensus 363 pEllF~HgGH~-----~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 363 PELLFIHGGHT-----AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cceeEEecCcc-----cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 331 21 322 45789999999999999999999999999854
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=41.87 E-value=2.3e+02 Score=26.96 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=44.1
Q ss_pred EEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEE-EEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 023927 58 FLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHE-VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 136 (275)
Q Consensus 58 f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~-~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIa 136 (275)
|+.+.+|+.+=++.+ +++-+....| .++-. ....++.++.-.| --++.|||+..| |.-+..++|.
T Consensus 3 ~~~~~~Gk~lAi~qd---~~iEiRsa~D-df~si~~kcqVpkD~~PQW---------Rkl~WSpD~tlL-a~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAILQD---QCIEIRSAKD-DFSSIIGKCQVPKDPNPQW---------RKLAWSPDCTLL-AYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEEec---cEEEEEeccC-CchheeEEEecCCCCCchh---------eEEEECCCCcEE-EEEcCCCeEE
Confidence 345889998777743 4555543222 34333 3345554444345 477889999977 5556689999
Q ss_pred EEEec
Q 023927 137 QYNIE 141 (275)
Q Consensus 137 vfdI~ 141 (275)
+||+.
T Consensus 69 vfdl~ 73 (282)
T PF15492_consen 69 VFDLM 73 (282)
T ss_pred EEecc
Confidence 99984
No 315
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.53 E-value=3.2e+02 Score=26.06 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=66.4
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
...++|.+|+-.-.+-++++. | ..+--+...| ||.-.-+|.++--++++-.+.....|+. +.|.+.. .
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~-g-h~~~Iy~a~~--sp~~~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~--~--- 191 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFN-G-HNSCIYQAAF--SPHIPNLFASASGDGTLRLWDVRSPGKF---MSIEAHN--S--- 191 (311)
T ss_pred ccCCceEeecCCCCcceEeec-C-CccEEEEEec--CCCCCCeEEEccCCceEEEEEecCCCce---eEEEecc--c---
Confidence 466778888877666666653 2 2334444444 9988888888777777766665443433 2232221 1
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 146 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~ 146 (275)
.+.-+-.|.-.+.+-++--.++.|+.|||..-..|
T Consensus 192 -------Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 192 -------EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred -------eeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 22345578888888888888999999999664433
No 316
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=41.50 E-value=3.4e+02 Score=26.29 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=36.0
Q ss_pred cccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEe
Q 023927 20 HVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSK 82 (275)
Q Consensus 20 ~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~ 82 (275)
+|........+.+||+....+.+.++.+ +|+ +.++|.+ ...+|++ .++++|-++..
T Consensus 27 ~LLvssWDgslrlYdv~~~~l~~~~~~~----~pl-L~c~F~d-~~~~~~G-~~dg~vr~~Dl 82 (323)
T KOG1036|consen 27 DLLVSSWDGSLRLYDVPANSLKLKFKHG----APL-LDCAFAD-ESTIVTG-GLDGQVRRYDL 82 (323)
T ss_pred cEEEEeccCcEEEEeccchhhhhheecC----Cce-eeeeccC-CceEEEe-ccCceEEEEEe
Confidence 3444557888999999988766666654 454 2455676 4556655 45667766654
No 317
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.32 E-value=3.2e+02 Score=27.19 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=17.9
Q ss_pred CcccCCCCceEEECCCCCEEEEEe
Q 023927 183 GHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 183 G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
|.+-..+=-.|+++|||++||.+-
T Consensus 195 g~~~n~gfEglait~d~~~L~~~l 218 (391)
T COG4222 195 GLRNNLGFEGLAITPDGKKLYALL 218 (391)
T ss_pred ccccccceeeEEecCCCceEEEEE
Confidence 444444556899999999999873
No 318
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=40.26 E-value=1.6e+02 Score=28.93 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=74.9
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCc-EEEEEeCCCCCeeEEEE-EEecCccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAST-MVRFSKTQDGSWNHEVA-ISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~st-V~~~~~~~~G~~~~~~v-i~i~~~~~~g 103 (275)
....|++||+....-+.+++-+.....|+- .|.-+-+++..-++.|+... ..++.+| |...|. +....+.-.
T Consensus 92 sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~-~ld~nck~~ii~~GtE~~~s~A~v~lwD----vR~~qq~l~~~~eSH~- 165 (376)
T KOG1188|consen 92 SDGTVRLWDIRSQAESARISWTQQSGTPFI-CLDLNCKKNIIACGTELTRSDASVVLWD----VRSEQQLLRQLNESHN- 165 (376)
T ss_pred cCCeEEEEEeecchhhhheeccCCCCCcce-EeeccCcCCeEEeccccccCceEEEEEE----eccccchhhhhhhhcc-
Confidence 344899999998877666766543333442 35445577777888887543 3344443 111222 211111111
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC-CCCeEEEEEEecceeec
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRK 160 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~-~~~~lv~~v~~gG~~~~ 160 (275)
.-.+-+.++|..--|-+|---+|=|.+||+..+ +.-.|+..+.+|-++.+
T Consensus 166 -------DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ 216 (376)
T KOG1188|consen 166 -------DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHL 216 (376)
T ss_pred -------CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeee
Confidence 234789999999999999999999999999663 33445555555544443
No 319
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=39.18 E-value=2.6e+02 Score=24.31 Aligned_cols=105 Identities=8% Similarity=0.035 Sum_probs=51.4
Q ss_pred eEEEEECCCCCeeEEEECCCCCccce-EEEEEeCCCCCEEEEeecc-CC--cEEEEEeCCCCCeeEEEEEEecCcccccc
Q 023927 29 HLFVYSWPDGELKQTLDLGNTGLIPL-EIRFLHDPSKDIGFVGCAL-AS--TMVRFSKTQDGSWNHEVAISVKSLKVQNW 104 (275)
Q Consensus 29 ~I~v~d~~~~k~~~~i~Lg~~G~gP~-~v~f~f~P~g~~~YV~~eL-~s--tV~~~~~~~~G~~~~~~vi~i~~~~~~g~ 104 (275)
.|..+|+.+++....++++....... ... +..-+|+.+++..-. .+ .||++...++..|+ +..+++.....+.
T Consensus 119 ~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~-L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~--k~~~i~~~~~~~~ 195 (230)
T TIGR01640 119 FIVSFDVSSERFKEFIPLPCGNSDSVDYLS-LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWS--KLFTVPIPPLPDL 195 (230)
T ss_pred EEEEEEcccceEeeeeecCccccccccceE-EEEECCEEEEEEecCCCCcEEEEEECCCCCCcee--EEEEEcCcchhhh
Confidence 68888988876654456642111011 111 122346666554322 12 56666433345687 4555542111110
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEeCCCCc-EEEEEec
Q 023927 105 ILPEMPGLITDFLISLDDRFLYFSNWLHGD-IRQYNIE 141 (275)
Q Consensus 105 ~~~~~~~~~adI~iSpDgrfLYVSNrg~~s-IavfdI~ 141 (275)
+ ....-..+..+|+-|.++....+. |..|++.
T Consensus 196 ----~-~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 196 ----V-DDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred ----h-hheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 0 112234567778877777542233 8888863
No 320
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=39.11 E-value=3.7e+02 Score=26.08 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=90.8
Q ss_pred CCcccc--ccCCccCCeEEEEECCCC-CeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEE
Q 023927 15 GFNLQH--VSDGLYGRHLFVYSWPDG-ELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHE 91 (275)
Q Consensus 15 g~~~~~--~~~g~~~d~I~v~d~~~~-k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~ 91 (275)
-|+|+. ++.|-+.+.|.+|.+... +..-+.++ . -.+-.++.| .+|++++|.. .-+-+|..|.. +.|+-..+
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-H-sgAVM~l~~--~~d~s~i~S~-gtDk~v~~wD~-~tG~~~rk 127 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-H-SGAVMELHG--MRDGSHILSC-GTDKTVRGWDA-ETGKRIRK 127 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeecc-c-cceeEeeee--ccCCCEEEEe-cCCceEEEEec-ccceeeeh
Confidence 366644 355668999999996543 43333342 2 334667776 9999998865 33445554443 33322111
Q ss_pred EEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCC
Q 023927 92 VAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDG 171 (275)
Q Consensus 92 ~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~ 171 (275)
+.+.. .....+..+.=|-+|-.|--.++++.+||+...+.-++..
T Consensus 128 ---------~k~h~-----~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------------- 172 (338)
T KOG0265|consen 128 ---------HKGHT-----SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------------- 172 (338)
T ss_pred ---------hcccc-----ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------------------
Confidence 11110 1223444556667787777788999999996433222210
Q ss_pred CCCCCCCccccCcccCCCCceEEECCCCCEEEEE--eCCCCCcccccccccccCCcEEEEEEeeCCCCC
Q 023927 172 QPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG 238 (275)
Q Consensus 172 ~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVA--Nsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~ 238 (275)
-++|. ..|.+.-++.-.+.+ |.-.+-||-.. .++..+++=+.|+.||-
T Consensus 173 ~kyql--------------tAv~f~d~s~qv~sggIdn~ikvWd~r~-----~d~~~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 173 NKYQL--------------TAVGFKDTSDQVISGGIDNDIKVWDLRK-----NDGLYTLSGHADTITGL 222 (338)
T ss_pred cceeE--------------EEEEecccccceeeccccCceeeecccc-----CcceEEeecccCceeeE
Confidence 00111 134555555555544 33456777754 45667777777777764
No 321
>COG4676 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.06 E-value=76 Score=29.30 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=46.0
Q ss_pred cCCCcCCcCCCccccc--cCCccCCeEEEEECCCCCeeEE--EECC---CCCccceEEEEEeCCCCCEEEEeecc
Q 023927 6 WGAPLAFTKGFNLQHV--SDGLYGRHLFVYSWPDGELKQT--LDLG---NTGLIPLEIRFLHDPSKDIGFVGCAL 73 (275)
Q Consensus 6 ~~~p~~~~~g~~~~~~--~~g~~~d~I~v~d~~~~k~~~~--i~Lg---~~G~gP~~v~f~f~P~g~~~YV~~eL 73 (275)
|..|-.|..|=|--++ .+|+.-.+|.||+...+|.-.+ +-|+ +.-..=+||. +|+|.|+|-.+-+
T Consensus 103 F~RPyaFg~GSNsVeV~sadG~~rqRvQFY~~~~g~~~arlRvvLsWD~d~tdlDlHvv---tPdG~Hawygn~~ 174 (268)
T COG4676 103 FARPYAFGEGSNSVEVRSADGQSRQRVQFYETNAGKTRARLRVVLSWDTDNTDLDLHVV---TPDGDHAWYGNPV 174 (268)
T ss_pred eecceeccCCCCceEEECCCcchhheEEEEecCCCccCceEEEEEEECCCCCceeEEEe---cCCCceeeecCce
Confidence 7788899999887666 6699999999999997764331 2222 1122345654 9999999998654
No 322
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=36.24 E-value=81 Score=24.75 Aligned_cols=42 Identities=26% Similarity=0.576 Sum_probs=27.4
Q ss_pred CCceEEECCCCCEEEEEeCCCCCccccccccc---ccCCcEEEEEEeeCCCCCee
Q 023927 189 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPEL---KEKGSHMLQIDVNSEKGGMA 240 (275)
Q Consensus 189 ~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~---~~~~~~~~~~d~d~~~G~l~ 240 (275)
+-|.--.+++|+++|- ||.|+ -++ .++|-++-.+ |+.||.+.
T Consensus 30 ~~r~rw~~~kG~kiYe-------wDsqH-G~lEvy~~~GkHLGe~--Dp~TGe~~ 74 (85)
T PF09000_consen 30 GKRKRWKDKKGRKIYE-------WDSQH-GELEVYNKRGKHLGEF--DPKTGEQI 74 (85)
T ss_dssp SB--EEEETTTTEEEE-------EETTT-TEEEEEETT-BEEEEE---TTTS-EE
T ss_pred ccccceEcCCCCEEEE-------EcCCC-CeEEEEcCCCcCcccc--cCCcccCc
Confidence 3778899999999996 88885 222 3567777777 77899875
No 323
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=36.14 E-value=2.8e+02 Score=23.81 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCeEEEEECCC-CCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccc
Q 023927 27 GRHLFVYSWPD-GELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWI 105 (275)
Q Consensus 27 ~d~I~v~d~~~-~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~ 105 (275)
...+.+|++.. .+....+... ...-.. +.|+|++++.++..+.++++..+.... ....+.+...
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~--~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------- 197 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGH--SESVTS--LAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGH-------- 197 (466)
T ss_pred CccEEEEEecCCCeEEEEEecC--cccEEE--EEECCCCCEEEecCCCCCceEEEEcCC---CceEEeeccC--------
Confidence 45899999987 4444444332 122223 455999995555544355555554321 1111111110
Q ss_pred cCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 106 LPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 106 ~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
......+.++|+++++.++.-..+.|.+|++.
T Consensus 198 ----~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 198 ----TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred ----CCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 03457888889999666665678889888764
No 324
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=36.06 E-value=1.5e+02 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=18.2
Q ss_pred eEEEEcCCCCEEEEE--e----CCCCcEEEEEecCC
Q 023927 114 TDFLISLDDRFLYFS--N----WLHGDIRQYNIEDP 143 (275)
Q Consensus 114 adI~iSpDgrfLYVS--N----rg~~sIavfdI~~~ 143 (275)
.+|.|++||. +|+. + .--+.|.++...++
T Consensus 145 ~~~~I~~dG~-i~~~~~~~~~~~~vg~l~lv~~~~~ 179 (259)
T TIGR02488 145 TSITVGSDGE-VSVRQGGQTEPQEVGQITLATFINP 179 (259)
T ss_pred ceEEECCCCe-EEEecCCCccccccceEEEEecCCH
Confidence 5799999999 4552 1 12355666666443
No 325
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=33.89 E-value=85 Score=22.40 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.4
Q ss_pred ceEEECCCCCEEEEEe
Q 023927 191 QMIQLSLDGKRLYVTN 206 (275)
Q Consensus 191 r~~~LSpDGk~LyVAN 206 (275)
+.+++-||||.|.+.+
T Consensus 4 ~~~~~q~DGkIlv~G~ 19 (55)
T TIGR02608 4 YAVAVQSDGKILVAGY 19 (55)
T ss_pred EEEEECCCCcEEEEEE
Confidence 5789999999887776
No 326
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.76 E-value=2.6e+02 Score=25.80 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=31.5
Q ss_pred cCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC----cEEEEEeCCCCCeeE
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS----TMVRFSKTQDGSWNH 90 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s----tV~~~~~~~~G~~~~ 90 (275)
..+.+..||+.+++..+.-+++. .+|.-+.+. .-+..+||.+..++ .+.+|.. ++.+|+.
T Consensus 137 ~~~~v~~yd~~~~~W~~~~~~p~---~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~~yd~-~~~~W~~ 200 (323)
T TIGR03548 137 PSNKSYLFNLETQEWFELPDFPG---EPRVQPVCV-KLQNELYVFGGGSNIAYTDGYKYSP-KKNQWQK 200 (323)
T ss_pred cCceEEEEcCCCCCeeECCCCCC---CCCCcceEE-EECCEEEEEcCCCCccccceEEEec-CCCeeEE
Confidence 34678899998888754333321 233211111 12457899876543 2333322 4467854
No 327
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=33.71 E-value=2.9e+02 Score=30.51 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=19.9
Q ss_pred EEEcCCCCEE-E-EEeCC---CCcEEEEEecCCC
Q 023927 116 FLISLDDRFL-Y-FSNWL---HGDIRQYNIEDPK 144 (275)
Q Consensus 116 I~iSpDgrfL-Y-VSNrg---~~sIavfdI~~~~ 144 (275)
-.+|||||+| | +|-.+ .-+|-+-++...+
T Consensus 355 P~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 355 PDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred CcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 3589999987 6 66665 3447777775543
No 328
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=33.55 E-value=84 Score=31.02 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=49.7
Q ss_pred eCCCCCEEEEeeccCCcEEEEEeCCCC-CeeEEEEEEec--CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEE
Q 023927 60 HDPSKDIGFVGCALASTMVRFSKTQDG-SWNHEVAISVK--SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIR 136 (275)
Q Consensus 60 f~P~g~~~YV~~eL~stV~~~~~~~~G-~~~~~~vi~i~--~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIa 136 (275)
|||..--.|+=.--.++|-.+...+.. .-...+...-+ |..... +.+.=...+|+.+|++|||+ -.|...+|-
T Consensus 221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf--fseiIsSISDvKFs~sGryi--lsRDyltvk 296 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF--FSEIISSISDVKFSHSGRYI--LSRDYLTVK 296 (433)
T ss_pred cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh--HHHHhhhhhceEEccCCcEE--EEeccceeE
Confidence 489887777776677788777653211 11111222211 211110 00122578999999999965 568889999
Q ss_pred EEEecCCCCC
Q 023927 137 QYNIEDPKNP 146 (275)
Q Consensus 137 vfdI~~~~~~ 146 (275)
+||++-..+|
T Consensus 297 ~wD~nme~~p 306 (433)
T KOG1354|consen 297 LWDLNMEAKP 306 (433)
T ss_pred EEeccccCCc
Confidence 9999654444
No 329
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=33.47 E-value=2.8e+02 Score=30.16 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=64.2
Q ss_pred cCCeEEEEECCCCCeeEEEECCC--CCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGN--TGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~--~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
-...|.||+...+|.+..++=.. +|. +..+. .+|.|-|+-.+|-- -++.++.+. .|..-+.. .|
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~-lIKv~--lDPSgiY~atScsd-ktl~~~Df~-sgEcvA~m---------~G 681 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGD-LIKVI--LDPSGIYLATSCSD-KTLCFVDFV-SGECVAQM---------TG 681 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCc-eEEEE--ECCCccEEEEeecC-CceEEEEec-cchhhhhh---------cC
Confidence 45679999999999988777432 233 55444 49999876666543 456555442 22221111 12
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEec
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIE 141 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~ 141 (275)
. ....+.+.+++|=|.| +|--|++.|-+|.+.
T Consensus 682 H-----sE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 682 H-----SEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred c-----chheeeeeecccchhh-eeecCCceEEEEECc
Confidence 1 1355789999999998 788899999999983
No 330
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=32.36 E-value=6.2e+02 Score=26.66 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCCEEEEeeccCC----------------cEEEEEeCCCC----CeeEEEEEEec-Cccccc--------
Q 023927 53 PLEIRFLHDPSKDIGFVGCALAS----------------TMVRFSKTQDG----SWNHEVAISVK-SLKVQN-------- 103 (275)
Q Consensus 53 P~~v~f~f~P~g~~~YV~~eL~s----------------tV~~~~~~~~G----~~~~~~vi~i~-~~~~~g-------- 103 (275)
|=.|.+ ||....+|+..=.++ .|+++.....+ +++...-+... +...++
T Consensus 419 pE~i~~--~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 419 PEWIAV--NPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred ccceee--cCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Q ss_pred --cccCCCCCceeEEEEcCCCCEEEEEeCCCCc--------EEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCC
Q 023927 104 --WILPEMPGLITDFLISLDDRFLYFSNWLHGD--------IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQP 173 (275)
Q Consensus 104 --~~~~~~~~~~adI~iSpDgrfLYVSNrg~~s--------IavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~ 173 (275)
. +.|=-|.+.|.|| |+++.=+.++ +.+....++...++......
T Consensus 497 ~~f------~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~------------------- 550 (616)
T COG3211 497 NWF------NSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTG------------------- 550 (616)
T ss_pred ccc------cCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccC-------------------
Q ss_pred CCCCCccccCcccCCCCceEEECCCCCEEEEEeCCCCCccccc
Q 023927 174 YQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQF 216 (275)
Q Consensus 174 ~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~ 216 (275)
|.|.. =--.++||||+.|||.= |+
T Consensus 551 -------P~g~E----~tG~~FspD~~TlFV~v--------QH 574 (616)
T COG3211 551 -------PIGCE----FTGPCFSPDGKTLFVNV--------QH 574 (616)
T ss_pred -------CCcce----eecceeCCCCceEEEEe--------cC
No 331
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.17 E-value=4.9e+02 Score=25.43 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=71.1
Q ss_pred cCCccCCeEEEEECCCCC----eeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeC---CC--C-CeeEE
Q 023927 22 SDGLYGRHLFVYSWPDGE----LKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKT---QD--G-SWNHE 91 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k----~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~---~~--G-~~~~~ 91 (275)
+..-...+|.|||+++.. ....... .+|+..|-+ ++ ||.=-.+-..|-++.+|.++.-. .+ | .|...
T Consensus 29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~-WA-hPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ 105 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVV-WA-HPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR 105 (361)
T ss_pred eeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEE-ec-CccccceEEEEecCCceeeeeecccccccccceeEEE
Confidence 445566789999976542 3445555 467777754 43 78877778888899999999652 11 2 46444
Q ss_pred EEEEecCccccccccCCCCCceeEEEEcCCCCEE-EEEeCCCCcEEEEEecCCCCC
Q 023927 92 VAISVKSLKVQNWILPEMPGLITDFLISLDDRFL-YFSNWLHGDIRQYNIEDPKNP 146 (275)
Q Consensus 92 ~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfL-YVSNrg~~sIavfdI~~~~~~ 146 (275)
.++. ... ...+||.+.|--.=| -+++-.++.+++|+.-++.++
T Consensus 106 ttl~--Dsr----------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 106 TTLV--DSR----------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred EEee--cCC----------cceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 4332 111 345799998866544 356667899999997665444
No 332
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.11 E-value=7.3e+02 Score=27.38 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEeCCCCCEEEEeeccCCc---EEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 023927 56 IRFLHDPSKDIGFVGCALAST---MVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLH 132 (275)
Q Consensus 56 v~f~f~P~g~~~YV~~eL~st---V~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~ 132 (275)
...+|++....+|++..-+.. |-+-....++..........+.....+ .....+.-=+|..-|++... .
T Consensus 25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~-------~~ivs~~yl~d~~~l~~~~~-~ 96 (928)
T PF04762_consen 25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPN-------DKIVSFQYLADSESLCIALA-S 96 (928)
T ss_pred ceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCC-------CcEEEEEeccCCCcEEEEEC-C
Q ss_pred CcEEEE----EecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEEeCC
Q 023927 133 GDIRQY----NIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSL 208 (275)
Q Consensus 133 ~sIavf----dI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVANsl 208 (275)
|.|..+ +. +......+|.+.. |-. .++.|||+..|.++.
T Consensus 97 Gdi~~~~~~~~~-~~~~~E~VG~vd~----------------------------GI~------a~~WSPD~Ella~vT-- 139 (928)
T PF04762_consen 97 GDIILVREDPDP-DEDEIEIVGSVDS----------------------------GIL------AASWSPDEELLALVT-- 139 (928)
T ss_pred ceEEEEEccCCC-CCceeEEEEEEcC----------------------------cEE------EEEECCCcCEEEEEe--
Q ss_pred CCCcccccccccccCCcEEEE-EEeeC
Q 023927 209 FSAWDCQFYPELKEKGSHMLQ-IDVNS 234 (275)
Q Consensus 209 ~~~wd~Q~yp~~~~~~~~~~~-~d~d~ 234 (275)
.++-.+++ .|.|+
T Consensus 140 -------------~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 140 -------------GEGNLLLMTRDFDP 153 (928)
T ss_pred -------------CCCEEEEEeccceE
No 333
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=31.73 E-value=1.9e+02 Score=29.68 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.4
Q ss_pred ceeEEEEcCCCCEEEEEeCC
Q 023927 112 LITDFLISLDDRFLYFSNWL 131 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg 131 (275)
.|=+|.++|....||+++-.
T Consensus 351 RpEgi~~~p~~g~vY~a~T~ 370 (524)
T PF05787_consen 351 RPEGITVNPDDGEVYFALTN 370 (524)
T ss_pred CccCeeEeCCCCEEEEEEec
Confidence 45689999999999999753
No 334
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=31.57 E-value=1.1e+02 Score=31.27 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=19.4
Q ss_pred eCCCCCEEEEeeccCCcEEEEEeC
Q 023927 60 HDPSKDIGFVGCALASTMVRFSKT 83 (275)
Q Consensus 60 f~P~g~~~YV~~eL~stV~~~~~~ 83 (275)
-+|++++.-+..-|+-+..+++.+
T Consensus 329 ~a~d~~~~i~~gklspt~t~i~~~ 352 (637)
T COG4263 329 TSPDGKYFIANGKLSPTFTVIFDD 352 (637)
T ss_pred cCCCceeEEEEeeecCceeehhhh
Confidence 388899888888888888888753
No 335
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=30.96 E-value=1.4e+02 Score=29.65 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=55.3
Q ss_pred ccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 21 VSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 21 ~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
++.|.-.++|.+||.++...+.. -.|..|+ .+.+ .=+ +++-|++--+|||.++... +|.- .++.
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~-L~GHtGS-VLCL----qyd-~rviisGSSDsTvrvWDv~-tge~--l~tl------ 273 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKI-LTGHTGS-VLCL----QYD-ERVIVSGSSDSTVRVWDVN-TGEP--LNTL------ 273 (499)
T ss_pred hhcccccCceEEeccccHHHHHh-hhcCCCc-EEee----ecc-ceEEEecCCCceEEEEecc-CCch--hhHH------
Confidence 47788889999999887643221 1244555 3333 223 3388888889999998762 2311 0110
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 144 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~ 144 (275)
-+. --+-+++--... .-|+|-.+-+|+|||...|.
T Consensus 274 -ihH-------ceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 274 -IHH-------CEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred -hhh-------cceeEEEEEeCC-EEEEecCCceeEEEeccCch
Confidence 000 001122222222 33677777899999987653
No 336
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=30.60 E-value=1.6e+02 Score=28.98 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=50.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEe--------cCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCC-ccc
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNI--------EDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV-PEV 181 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI--------~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~-~~~ 181 (275)
+...-+++.|||...|++.-....|..|+- .+|.- |....-|.+..+..|+|+-+=.+...|-| ..-
T Consensus 28 gs~pvvLV~PDGsk~ya~~~~p~~V~W~~~~~~DlItI~~Pmp----GpWq~~G~v~p~sri~viS~L~L~v~plP~~l~ 103 (374)
T TIGR03503 28 GSPPVILVRPDGSKYYAWRVHPEDVKWYDESTMDIISIKNPMP----GPWQAIGKITPGNRVKVISNLRLEVEPLPSPLF 103 (374)
T ss_pred CCCCeEEECCCCcEEeccCCCCCCceEEecCCceEEEeCCCCC----CCcEEeeeeCCCCeEEEEeccEEEEecCCcccc
Confidence 345678899999999987634456776663 33321 22344455566678888886555555533 333
Q ss_pred cCcccCCCCceEEECCCCCEE
Q 023927 182 QGHRLRGGPQMIQLSLDGKRL 202 (275)
Q Consensus 182 ~G~~~~g~Pr~~~LSpDGk~L 202 (275)
+|++ -.-...|.-||+.|
T Consensus 104 ~gE~---lk~ta~L~~d~~~i 121 (374)
T TIGR03503 104 QGET---LKVTAKLLNDGEPL 121 (374)
T ss_pred CCCe---EEEEEEEecCCEEe
Confidence 4554 23334566677655
No 337
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=30.41 E-value=9.5e+02 Score=28.23 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=84.0
Q ss_pred CccccccCCccCCeEEEEECCC-------CCeeEEEECC-CCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCC---
Q 023927 16 FNLQHVSDGLYGRHLFVYSWPD-------GELKQTLDLG-NTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQ--- 84 (275)
Q Consensus 16 ~~~~~~~~g~~~d~I~v~d~~~-------~k~~~~i~Lg-~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~--- 84 (275)
|+|..|+.+. ..++.|=|++= +....-+.|+ .+.+--++++ .+|=.-.+||+--++-.|+++.-.+
T Consensus 365 ~aPvala~a~-DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~A--vsPvdgtlyvSdp~s~qv~rv~sl~~~d 441 (1899)
T KOG4659|consen 365 FAPVALAYAP-DGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIA--VSPVDGTLYVSDPLSKQVWRVSSLEPQD 441 (1899)
T ss_pred eceeeEEEcC-CCcEEEccchheeeecCCCceEEEEEecCCCccceeEEE--ecCcCceEEecCCCcceEEEeccCCccc
Confidence 3444444442 23455555542 2333345555 3333344555 4999999999999999999996422
Q ss_pred -CCCeeEEEE---EEecCccccc---cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecce
Q 023927 85 -DGSWNHEVA---ISVKSLKVQN---WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL 157 (275)
Q Consensus 85 -~G~~~~~~v---i~i~~~~~~g---~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~ 157 (275)
.+.|+...= ..+|....-| .+...--..|-.|.++.+|- ||.+.- -.|++.|-+. . |.+
T Consensus 442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~-lYfaD~--t~IR~iD~~g----i----Ist--- 507 (1899)
T KOG4659|consen 442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGN-LYFADG--TRIRVIDTTG----I----IST--- 507 (1899)
T ss_pred cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCc-EEEecc--cEEEEeccCc----e----EEE---
Confidence 234432210 1111111011 11111223667888998887 776532 3466666411 1 111
Q ss_pred eecCCceeeecCCCCCCCCCC-------ccccCcccCCCCceEEECCCCCEEEEEe
Q 023927 158 FRKGSPVVAVTDDGQPYQSDV-------PEVQGHRLRGGPQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 158 ~~~~~~~~v~~~~~~~~~~~~-------~~~~G~~~~g~Pr~~~LSpDGk~LyVAN 206 (275)
+++..++++.|-+ ....=+ ||-.++++|=-.-|||-.
T Consensus 508 --------lig~~~~~~~p~~C~~~~kl~~~~le----WPT~LaV~Pmdnsl~Vld 551 (1899)
T KOG4659|consen 508 --------LIGTTPDQHPPRTCAQITKLVDLQLE----WPTSLAVDPMDNSLLVLD 551 (1899)
T ss_pred --------eccCCCCccCccccccccchhheeee----cccceeecCCCCeEEEee
Confidence 2233333333322 122233 599999999888899864
No 338
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=30.33 E-value=2.9e+02 Score=26.26 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=16.7
Q ss_pred CceEEECCCCCEEEEEeCC--CCCcccc
Q 023927 190 PQMIQLSLDGKRLYVTNSL--FSAWDCQ 215 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVANsl--~~~wd~Q 215 (275)
=+++.-++||++|.|.+.- |++||.-
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G 174 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPG 174 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCC
Confidence 4567778899988888754 8888754
No 339
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=30.23 E-value=2.6e+02 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCEEEEEeCC------CCcEEEEEecCCC
Q 023927 113 ITDFLISLDDRFLYFSNWL------HGDIRQYNIEDPK 144 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg------~~sIavfdI~~~~ 144 (275)
..+|.|++||. +|+..-+ -+.|.++...++.
T Consensus 146 ~~~~~I~~dG~-I~~~~~~~~~~~~vg~l~lv~~~~~~ 182 (260)
T PRK12694 146 ATSLTIGKDGT-VSVTQPGSSNAVQIGQLQLATFINPA 182 (260)
T ss_pred cceeEECCCCe-EEEecCCCccccccceeEEEecCChH
Confidence 35899999999 4663222 3566666665543
No 340
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=29.77 E-value=3.1e+02 Score=28.95 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=54.8
Q ss_pred cEEEEEe--CCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEE-EEecCCCCCeEEEEE
Q 023927 76 TMVRFSK--TQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQ-YNIEDPKNPVLTGQI 152 (275)
Q Consensus 76 tV~~~~~--~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIav-fdI~~~~~~~lv~~v 152 (275)
+||.+.+ .+.++|-..|+-.+-. . .|-.|-.++-+|..--|-|=... ++++ +++. -++-++...|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e------~---~pvLpQGCVWHPk~~iL~VLT~~--dvSV~~sV~-~d~srVkaDi 152 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIRE------P---FPVLPQGCVWHPKKAILTVLTAR--DVSVLPSVH-CDSSRVKADI 152 (671)
T ss_pred EEEEeccCccccccceeeeeeeccC------C---cccCCCcccccCCCceEEEEecC--ceeEeeeee-eCCceEEEec
Confidence 3444443 2457888888877641 1 22556677777777766665442 2333 3332 2334555556
Q ss_pred EecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEECCCCCEEEEE--eCCCC-Cccc
Q 023927 153 WVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVT--NSLFS-AWDC 214 (275)
Q Consensus 153 ~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~LSpDGk~LyVA--Nsl~~-~wd~ 214 (275)
...|.++. -+.++||+||.|| ++|-| -||+
T Consensus 153 ~~~G~IhC--------------------------------ACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 153 KTSGLIHC--------------------------------ACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCceEEE--------------------------------EEecCcCCEEEEEeCCeEEEEEecC
Confidence 66666543 2778899999998 33333 3665
No 341
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=29.72 E-value=4.8e+02 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEe
Q 023927 112 LITDFLISLDDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~~sIavfdI 140 (275)
+...|....+|.+| ||.|.-++|.+++-
T Consensus 145 HiNsV~~~~~G~yL-iS~R~~~~i~~I~~ 172 (299)
T PF14269_consen 145 HINSVDKDDDGDYL-ISSRNTSTIYKIDP 172 (299)
T ss_pred EeeeeeecCCccEE-EEecccCEEEEEEC
Confidence 67788889999976 99999998888873
No 342
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.53 E-value=1.9e+02 Score=29.91 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.4
Q ss_pred CceEEECCCCCEEEEEeCCCCCcccc
Q 023927 190 PQMIQLSLDGKRLYVTNSLFSAWDCQ 215 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVANsl~~~wd~Q 215 (275)
+..++++|||+.|.+|..=++.||..
T Consensus 147 ~~sl~is~D~~~l~~as~~ik~~~~~ 172 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASRQIKVLDIE 172 (541)
T ss_pred cceEEEcCCCCEEEeccceEEEEEcc
Confidence 88999999999999998766667665
No 343
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=29.24 E-value=1.5e+02 Score=27.74 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=42.7
Q ss_pred eEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecC-Cceeeec
Q 023927 114 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVT 168 (275)
Q Consensus 114 adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~-~~~~v~~ 168 (275)
-.+.+.+.+-+||+|-...+.-.--.+++..++..++...++|.++-. +.|+++-
T Consensus 109 d~V~L~M~dG~LyA~~~~kg~A~g~A~~dA~~GedV~it~i~G~Id~e~G~v~i~~ 164 (260)
T COG1497 109 DTVYLRMKDGYLYASRSAKGGATGVALTDAEKGEDVGITEIGGMIDVEKGEVTIVK 164 (260)
T ss_pred CEEEEEecCcEEEEeccCCCcceeEEecccccCCeeeeeeccCcccCCCCeEEEEE
Confidence 489999999999999997765555555556678899999999988754 6666665
No 344
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=29.19 E-value=5.3e+02 Score=27.17 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=40.4
Q ss_pred cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec------cCCcEEEEEeCCCC
Q 023927 22 SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA------LASTMVRFSKTQDG 86 (275)
Q Consensus 22 ~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e------L~stV~~~~~~~~G 86 (275)
.+|...++++-.|+.-+|++.+.+++.+ - ...|.|..++.=...| -..+|+++.....|
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~dd-v-----vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDD-V-----VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCc-c-----eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 5677889999999999999999999642 1 2345777766554444 24566777654444
No 345
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=29.14 E-value=3.7e+02 Score=23.06 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=56.0
Q ss_pred cCCeEEEEECCCCC-eeEEEECCCCCccceEEEEEeCCCCCEEEEe-eccCCcEEEEEeCCCCCeeEEEEEEecCccccc
Q 023927 26 YGRHLFVYSWPDGE-LKQTLDLGNTGLIPLEIRFLHDPSKDIGFVG-CALASTMVRFSKTQDGSWNHEVAISVKSLKVQN 103 (275)
Q Consensus 26 ~~d~I~v~d~~~~k-~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~-~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g 103 (275)
....+.+|+..... .+..+.... ...-..+.+. ++++....+. .....++..+.... .......+....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~----- 155 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLH-DSSVSKLALS-SPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHS----- 155 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccC-CCceeeEEEE-CCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCc-----
Confidence 56788899988876 444443311 1112333344 7888834444 33355665555421 111122222211
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecC
Q 023927 104 WILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED 142 (275)
Q Consensus 104 ~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~ 142 (275)
....++.++|+++++.+.....+.+..|++..
T Consensus 156 -------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 156 -------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred -------ccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 23458999999995544433489999999854
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=28.92 E-value=4.6e+02 Score=26.01 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=16.9
Q ss_pred EEEEcCCCCEE-EEEeCCCCcEEEEEecC
Q 023927 115 DFLISLDDRFL-YFSNWLHGDIRQYNIED 142 (275)
Q Consensus 115 dI~iSpDgrfL-YVSNrg~~sIavfdI~~ 142 (275)
...+|+++|.| ||.+- .+|...+++.
T Consensus 85 g~~~s~~~~~~~Yv~~~--~~l~~vdL~T 111 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNG--RSLRRVDLDT 111 (386)
T ss_dssp T-EE-TTSSEEEEEETT--TEEEEEETTT
T ss_pred ceEEecCCCeEEEEECC--CeEEEEECCc
Confidence 46688999997 66532 5787788744
No 347
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.76 E-value=3e+02 Score=21.87 Aligned_cols=99 Identities=7% Similarity=0.053 Sum_probs=54.8
Q ss_pred ccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC-----cEEEEEeCCCCCeeEEEEEEecCc
Q 023927 25 LYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS-----TMVRFSKTQDGSWNHEVAISVKSL 99 (275)
Q Consensus 25 ~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s-----tV~~~~~~~~G~~~~~~vi~i~~~ 99 (275)
.....|..+|+.+++. ..+.++........-..+..=+|+.+.+...-.+ .||++...+++.|. ++.+.++..
T Consensus 17 ~~~~~IvsFDv~~E~f-~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Ws-k~~~~lp~~ 94 (129)
T PF08268_consen 17 SDNNVIVSFDVRSEKF-RFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWS-KKHIVLPPS 94 (129)
T ss_pred CCCcEEEEEEcCCceE-EEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEE-EEEEECChH
Confidence 4578899999998876 3455531111111112334557888888777654 56777644457898 444444432
Q ss_pred cccccccCCCCCceeEEEEcCCCCEEEEEe
Q 023927 100 KVQNWILPEMPGLITDFLISLDDRFLYFSN 129 (275)
Q Consensus 100 ~~~g~~~~~~~~~~adI~iSpDgrfLYVSN 129 (275)
. .... ......-.-++.+|+.++++.
T Consensus 95 ~-~~~~---~~~~~~~~g~~~~Geiv~~~~ 120 (129)
T PF08268_consen 95 W-QHFV---HDCDFSFVGVTDTGEIVFASP 120 (129)
T ss_pred H-hccc---CCcEEEEEEEcCCCEEEEEEC
Confidence 1 1100 001233445677888777733
No 348
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=28.04 E-value=7.4e+02 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCC--CcEEEEEecCC-CCCeEEE
Q 023927 112 LITDFLISLDDRFLYFSNWLH--GDIRQYNIEDP-KNPVLTG 150 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~--~sIavfdI~~~-~~~~lv~ 150 (275)
.--.|.-|.+.+||++++-.| ..|.+++.+++ ..++++.
T Consensus 225 f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~ 266 (682)
T COG1770 225 FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVL 266 (682)
T ss_pred EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEE
Confidence 446788899999999999776 56777777665 4566643
No 349
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=28.04 E-value=2.9e+02 Score=22.48 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=24.2
Q ss_pred CceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEE
Q 023927 190 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 228 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~ 228 (275)
=+.++++.+|+ ||.+. ..+-|+.|.-++-+++-..+
T Consensus 50 ~~YLCmn~~G~-ly~s~--~~~~dC~F~E~~~~n~Y~~y 85 (123)
T cd00058 50 CRYLCMNKCGK-LYGSK--GFTEECLFREELLENNYNTY 85 (123)
T ss_pred ceEEEECCCCC-EEECC--CCCCCCEEEEEEccCCcEEE
Confidence 45799999997 99876 66677776444433444444
No 350
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=27.89 E-value=2.7e+02 Score=30.77 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=41.0
Q ss_pred cceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 023927 52 IPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWL 131 (275)
Q Consensus 52 gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg 131 (275)
.|-++.| .|..+.+--+-+-...+..+.++..|. .++ +. ++-+-..|..+++.+|-+.|.
T Consensus 1157 LPNGLtf--dpfs~~LCWvDAGt~rleC~~p~g~gR----R~i------~~--------~LqYPF~itsy~~~fY~TDWk 1216 (1289)
T KOG1214|consen 1157 LPNGLTF--DPFSKLLCWVDAGTKRLECTLPDGTGR----RVI------QN--------NLQYPFSITSYADHFYHTDWK 1216 (1289)
T ss_pred CCCCcee--CcccceeeEEecCCcceeEecCCCCcc----hhh------hh--------cccCceeeeeccccceeeccc
Confidence 5666665 777776665544433333333322111 000 11 233445688899999999999
Q ss_pred CCcEEEEEe
Q 023927 132 HGDIRQYNI 140 (275)
Q Consensus 132 ~~sIavfdI 140 (275)
.|.|...++
T Consensus 1217 ~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1217 RNGVVSVNK 1225 (1289)
T ss_pred cCceEEeec
Confidence 999887775
No 351
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=27.37 E-value=1.6e+02 Score=21.91 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=45.3
Q ss_pred cCcccCCCCceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEE-EEEeeCCCCCee-eccceeEecCC
Q 023927 182 QGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML-QIDVNSEKGGMA-INPNFFVDFEA 251 (275)
Q Consensus 182 ~G~~~~g~Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~-~~d~d~~~G~l~-~~~~f~vdf~~ 251 (275)
.|+. ..++-++-.|..+.++= ++.+-+.++|.+..+....+ .+.+-+.++... .+.+|.+-|..
T Consensus 17 ~~~~----~~miL~De~G~~I~a~i--~~~~~~~f~~~L~eg~vy~is~f~v~~~~~~y~~~~~~y~I~f~~ 82 (86)
T cd04480 17 SGES----LEMVLVDEKGNRIHATI--PKRLAAKFRPLLKEGKWYTISNFEVAPNTGSYRPTDHPYKIKFMS 82 (86)
T ss_pred CCcE----EEEEEEcCCCCEEEEEE--CHHHHHhhhhhceeCCEEEEeeEEEEcCCCcccccCCcEEEEeec
Confidence 4555 77888999999898864 56566677777755444444 377877877775 56678888854
No 352
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=2.4e+02 Score=26.26 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=35.6
Q ss_pred cCCeEEEEECCCCCeeEEEECCCC----------CccceEEEEEeCCCCCEEEEeeccCCcEE
Q 023927 26 YGRHLFVYSWPDGELKQTLDLGNT----------GLIPLEIRFLHDPSKDIGFVGCALASTMV 78 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~~~~i~Lg~~----------G~gP~~v~f~f~P~g~~~YV~~eL~stV~ 78 (275)
+.++|..+|.+++|++..|++..- -..+-+| +|.|++.++|+.+-+=..++
T Consensus 194 ~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGI--A~~~~~~r~~iTGK~wp~lf 254 (262)
T COG3823 194 QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGI--AHDPQQDRFLITGKLWPLLF 254 (262)
T ss_pred eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccce--eecCcCCeEEEecCcCceeE
Confidence 468899999999999998887520 0123344 45899988998866544443
No 353
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=27.11 E-value=5.5e+02 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCEEEEEeCCC--CcEEEEEecC
Q 023927 113 ITDFLISLDDRFLYFSNWLH--GDIRQYNIED 142 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg~--~sIavfdI~~ 142 (275)
.+.-++. ||+.+|||..+. ++ -.||+..
T Consensus 179 i~sYavv-~g~~I~vS~~~~~~GT-ysfDt~~ 208 (342)
T PF07893_consen 179 ITSYAVV-DGRTIFVSVNGRRWGT-YSFDTES 208 (342)
T ss_pred EEEEEEe-cCCeEEEEecCCceEE-EEEEcCC
Confidence 4555566 999999998876 54 4477643
No 354
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=27.02 E-value=2.3e+02 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=18.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 113 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 113 ~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
...|.|++||.. ++....-+.|.+++..++
T Consensus 135 ~~~~~I~~dG~i-~~~g~~vg~l~lv~~~~~ 164 (238)
T PRK12690 135 ARSVAVGADGTL-SADGQPLGQIGLYQPTDP 164 (238)
T ss_pred CceEEECCCCeE-EECCeeeeeEEEEecCCH
Confidence 358999999995 552211245666665443
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=26.77 E-value=1.1e+02 Score=16.22 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=17.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 112 LITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
....+.++++++++..+. .++.|.+|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 446788888887765443 366676663
No 356
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=25.30 E-value=75 Score=31.07 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=28.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCC
Q 023927 111 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP 146 (275)
Q Consensus 111 ~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~ 146 (275)
...+|+.+|+.||+ +..|...+|..||++...+|
T Consensus 281 sSISD~kFs~ngry--IlsRdyltvkiwDvnm~k~p 314 (460)
T COG5170 281 SSISDFKFSDNGRY--ILSRDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhcceEEcCCCcE--EEEeccceEEEEecccccCC
Confidence 57899999999995 56788999999999765544
No 357
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=25.15 E-value=5.1e+02 Score=23.37 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCEEEEEeC--CCCcEEEEEecC
Q 023927 112 LITDFLISLDDRFLYFSNW--LHGDIRQYNIED 142 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNr--g~~sIavfdI~~ 142 (275)
...++.|||||.++=+--+ +.+.|.+--|..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 5689999999998765553 356777766644
No 358
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=24.96 E-value=4.5e+02 Score=26.28 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=39.5
Q ss_pred EEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCCCCCCccccCcccCCCCceEEE
Q 023927 116 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL 195 (275)
Q Consensus 116 I~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~g~Pr~~~L 195 (275)
+.+-+||.+|..+. +.+..+|. - ++.+-+..+.+ |- ..-=.++..
T Consensus 153 ~~~l~nG~ll~~~~---~~~~e~D~--~--G~v~~~~~l~~--------------------------~~--~~~HHD~~~ 197 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG---NRLYEIDL--L--GKVIWEYDLPG--------------------------GY--YDFHHDIDE 197 (477)
T ss_dssp EEE-TTS-EEEEEB---TEEEEE-T--T----EEEEEE--T--------------------------TE--E-B-S-EEE
T ss_pred eeEcCCCCEEEecC---CceEEEcC--C--CCEEEeeecCC--------------------------cc--cccccccEE
Confidence 88899999998887 77777776 2 34443333321 11 000248999
Q ss_pred CCCCCEEEEEeCCCCC--cccccccccccCCcEEEEEEeeCCCCCee
Q 023927 196 SLDGKRLYVTNSLFSA--WDCQFYPELKEKGSHMLQIDVNSEKGGMA 240 (275)
Q Consensus 196 SpDGk~LyVANsl~~~--wd~Q~yp~~~~~~~~~~~~d~d~~~G~l~ 240 (275)
.|+|.+|+.++.-... ...+. .-.+.|+.+ | .+|++.
T Consensus 198 l~nGn~L~l~~~~~~~~~~~~~~-----~~~D~Ivev--d-~tG~vv 236 (477)
T PF05935_consen 198 LPNGNLLILASETKYVDEDKDVD-----TVEDVIVEV--D-PTGEVV 236 (477)
T ss_dssp -TTS-EEEEEEETTEE-TS-EE--------S-EEEEE----TTS-EE
T ss_pred CCCCCEEEEEeecccccCCCCcc-----EecCEEEEE--C-CCCCEE
Confidence 9999999999820000 11111 236677766 6 789874
No 359
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.58 E-value=1.9e+02 Score=27.38 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=37.6
Q ss_pred ccccCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeec
Q 023927 19 QHVSDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCA 72 (275)
Q Consensus 19 ~~~~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~e 72 (275)
+++..|.....|++||+-..+.+..+.++ +.|.-.-+.+||....+++...
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~---~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVV---STVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccC---CceeEEeeecccCccceeEecC
Confidence 44567888889999999998887755553 3664445667999888887743
No 360
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.36 E-value=1e+03 Score=26.68 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=68.6
Q ss_pred CCeEEEEECCCCCeeEEEECCCCC---ccceEEEEEeCCCCCEEEEeeccCCcEEEEEe---CCCC--------------
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNTG---LIPLEIRFLHDPSKDIGFVGCALASTMVRFSK---TQDG-------------- 86 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~G---~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~---~~~G-------------- 86 (275)
...|..||+.+.|-++.+.|...| ..||.+.+ +|..+.+-+..-+.+...-+.. +.+|
T Consensus 339 d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsY--Npae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~ 416 (1202)
T KOG0292|consen 339 DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSY--NPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEG 416 (1202)
T ss_pred cceEEeeeccccccceeEeccCCCcccCCcceeee--ccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCc
Confidence 567888999988877777776544 56776655 9998866666455454444432 1111
Q ss_pred -CeeEEEEEEecCc---c-----cc---ccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 87 -SWNHEVAISVKSL---K-----VQ---NWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 87 -~~~~~~vi~i~~~---~-----~~---g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
.|.++-...+..+ . .. ...+ .++...-+|--.-+|-+|-.+ .++|..||++. .+.++++.+
T Consensus 417 a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl-~~~~~~~~IF~ag~g~lll~~---~~~v~lfdvQq---~~~~~si~~ 489 (1202)
T KOG0292|consen 417 ALFVARNRFAVLDKSNEQVVIKNLKNKVTKKL-LLPESTDDIFYAGTGNLLLRS---PDSVTLFDVQQ---KKKVGSIKV 489 (1202)
T ss_pred eEEEEecceEEEEecCcceEEecccchhhhcc-cCcccccceeeccCccEEEEc---CCeEEEEEeec---ceEEEEEec
Confidence 1333322211111 0 00 1111 134455677778888877655 67999999954 445566654
No 361
>PLN02193 nitrile-specifier protein
Probab=24.31 E-value=5.2e+02 Score=25.58 Aligned_cols=59 Identities=7% Similarity=-0.061 Sum_probs=33.0
Q ss_pred CeEEEEECCCCCeeEEEECCCCCccce--EEEEEeCCCCCEEEEeeccC--------------CcEEEEEeCCCCCeeEE
Q 023927 28 RHLFVYSWPDGELKQTLDLGNTGLIPL--EIRFLHDPSKDIGFVGCALA--------------STMVRFSKTQDGSWNHE 91 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~~G~gP~--~v~f~f~P~g~~~YV~~eL~--------------stV~~~~~~~~G~~~~~ 91 (275)
+.|++||+++.+..+...++. ...|| |-+.++ +..+||.+... +++++|.. .+..|+..
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~-~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~-~t~~W~~~ 417 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGV-RPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT-ETLQWERL 417 (470)
T ss_pred CceEEEECCCCEEEEeccCCC-CCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccEEEEEc-CcCEEEEc
Confidence 679999999988765333321 11344 222222 45688877642 34555543 44577644
No 362
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=24.17 E-value=73 Score=20.71 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.5
Q ss_pred CceEEECCCCCEEEEEe
Q 023927 190 PQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVAN 206 (275)
|+.++++++|. +|||-
T Consensus 15 ~~~IavD~~GN-iYv~G 30 (38)
T PF06739_consen 15 GNGIAVDSNGN-IYVTG 30 (38)
T ss_pred EEEEEECCCCC-EEEEE
Confidence 88999999998 88876
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.67 E-value=7.3e+02 Score=24.64 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCcEEEEEecCCCCCeEEEEEEecc
Q 023927 121 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG 156 (275)
Q Consensus 121 DgrfLYVSNrg~~sIavfdI~~~~~~~lv~~v~~gG 156 (275)
.+..||+.. ..+.|..||.+ +++++-+..+++
T Consensus 405 ~g~~v~~g~-~dG~l~ald~~---tG~~lW~~~~~~ 436 (488)
T cd00216 405 AGNLVFAGA-ADGYFRAFDAT---TGKELWKFRTPS 436 (488)
T ss_pred cCCeEEEEC-CCCeEEEEECC---CCceeeEEECCC
Confidence 567899987 46788888863 466666666543
No 364
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=23.24 E-value=1.1e+02 Score=21.16 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=17.0
Q ss_pred eEEEEcCCCCEEEEEeCCC
Q 023927 114 TDFLISLDDRFLYFSNWLH 132 (275)
Q Consensus 114 adI~iSpDgrfLYVSNrg~ 132 (275)
..|++++||.|+.+-++..
T Consensus 7 ~aiVlT~dGeF~~ik~~~~ 25 (56)
T PF12791_consen 7 YAIVLTPDGEFIKIKRKPG 25 (56)
T ss_pred EEEEEcCCCcEEEEeCCCC
Confidence 6899999999999988865
No 365
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.24 E-value=1.2e+02 Score=32.62 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=41.7
Q ss_pred CCcCCcCCCccccc--cCCccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCC
Q 023927 8 APLAFTKGFNLQHV--SDGLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALAS 75 (275)
Q Consensus 8 ~p~~~~~g~~~~~~--~~g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~s 75 (275)
.+.+... |.|.++ .-|-....|.|||+.+-.++...+ ++-.+++.++| +|+++.++.+++.+=
T Consensus 197 ~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~--~~~~~v~~~~f--n~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 197 GKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETFEVISSGK--PETDGVRSLAF--NPDGKIVLSGEQISL 261 (825)
T ss_pred ccccccc-cCchhhhhccCCCCceeeeeccceeEEeeccC--CccCCceeeee--cCCceeeecCchhhh
Confidence 3444444 444442 337777889999998766554332 33457887776 999999999987543
No 366
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=23.18 E-value=9.1e+02 Score=25.58 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=68.8
Q ss_pred CccCCeEEEEECCCCCeeEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEe---C--C-CCCeeEEEEEEec
Q 023927 24 GLYGRHLFVYSWPDGELKQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSK---T--Q-DGSWNHEVAISVK 97 (275)
Q Consensus 24 g~~~d~I~v~d~~~~k~~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~---~--~-~G~~~~~~vi~i~ 97 (275)
...+.++++||...+.+.....+.. ...-+.+-|+..|++... ++-.+.+.|..+.+ + . .-.|...+.+.+.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~-~~~I~dLDWtst~d~qsi-LaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSE-DDPIRDLDWTSTPDGQSI-LAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecC-CCceeeceeeecCCCCEE-EEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 4578999999999888777666632 334578889999999754 44467788888853 1 1 2368777777664
Q ss_pred CccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEE
Q 023927 98 SLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYN 139 (275)
Q Consensus 98 ~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfd 139 (275)
. .+ +-.+.|+..-+||-++-+| .|.+-+|+
T Consensus 125 ~--~T-------~h~Igds~Wl~~G~LvV~s---GNqlfv~d 154 (631)
T PF12234_consen 125 S--HT-------PHPIGDSIWLKDGTLVVGS---GNQLFVFD 154 (631)
T ss_pred c--CC-------CCCccceeEecCCeEEEEe---CCEEEEEC
Confidence 2 12 1234677788888766555 56777776
No 367
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=23.06 E-value=6.5e+02 Score=23.86 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=15.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCC
Q 023927 112 LITDFLISLDDRFLYFSNWLH 132 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~ 132 (275)
...++..++||++|.||.||+
T Consensus 146 s~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSS
T ss_pred eeEeEEECCCCcEEEEECccc
Confidence 457788999999999999976
No 368
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.93 E-value=6e+02 Score=23.35 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=58.9
Q ss_pred eEEEECCCCCccceEEEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcC
Q 023927 41 KQTLDLGNTGLIPLEIRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISL 120 (275)
Q Consensus 41 ~~~i~Lg~~G~gP~~v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSp 120 (275)
..++.|+-...|.-|+++ ...+|-.+..+++|+++.... ....+ ...++...+.+ ..+-..+.-++|-+.-
T Consensus 60 ~~~~~Lp~~~~GtG~vVY-----ngslYY~~~~s~~IvkydL~t-~~v~~--~~~L~~A~~~n-~~~y~~~~~t~iD~Av 130 (250)
T PF02191_consen 60 SRTYKLPYPWQGTGHVVY-----NGSLYYNKYNSRNIVKYDLTT-RSVVA--RRELPGAGYNN-RFPYYWSGYTDIDFAV 130 (250)
T ss_pred ceEEEEeceeccCCeEEE-----CCcEEEEecCCceEEEEECcC-CcEEE--EEECCcccccc-ccceecCCCceEEEEE
Confidence 345566545566677664 234666777889999997532 22221 22344332221 0111113445666666
Q ss_pred CCCEE---EEEeCCCCcEEEEEecCCCCCeEEEEEEe
Q 023927 121 DDRFL---YFSNWLHGDIRQYNIEDPKNPVLTGQIWV 154 (275)
Q Consensus 121 DgrfL---YVSNrg~~sIavfdI~~~~~~~lv~~v~~ 154 (275)
|..=| |++...++.|.+=.+ ++.++.......+
T Consensus 131 DE~GLWvIYat~~~~g~ivvskl-d~~tL~v~~tw~T 166 (250)
T PF02191_consen 131 DENGLWVIYATEDNNGNIVVSKL-DPETLSVEQTWNT 166 (250)
T ss_pred cCCCEEEEEecCCCCCcEEEEee-CcccCceEEEEEe
Confidence 66644 445666677888888 6677888777666
No 369
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=22.27 E-value=3.6e+02 Score=28.76 Aligned_cols=75 Identities=13% Similarity=0.282 Sum_probs=51.8
Q ss_pred CCCC-CEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc-cccccCCCCCceeEEEEcCCCCEEEEEeCC--CCcEE
Q 023927 61 DPSK-DIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV-QNWILPEMPGLITDFLISLDDRFLYFSNWL--HGDIR 136 (275)
Q Consensus 61 ~P~g-~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~-~g~~~~~~~~~~adI~iSpDgrfLYVSNrg--~~sIa 136 (275)
||.. |.|.+.-=-++.|-.++...++.|.......+..-.. ..+ -.-|+|.-+.+|+.|-++..+ .+.|.
T Consensus 57 HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~------ithAsi~~~~~g~~ili~t~s~~s~~l~ 130 (753)
T PF11635_consen 57 HPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDL------ITHASIAPSDNGKSILIATYSSLSKQLR 130 (753)
T ss_pred CCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccc------eeeceeeecCCCCEEEEEEccccCCceE
Confidence 7876 8888776666777766665677786665333221111 112 234799999999999999988 79999
Q ss_pred EEEec
Q 023927 137 QYNIE 141 (275)
Q Consensus 137 vfdI~ 141 (275)
.|.|.
T Consensus 131 ~yrv~ 135 (753)
T PF11635_consen 131 FYRVQ 135 (753)
T ss_pred EEEEE
Confidence 99984
No 370
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=22.25 E-value=2.2e+02 Score=28.68 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=24.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCCcEEEEEecCC
Q 023927 112 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP 143 (275)
Q Consensus 112 ~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~ 143 (275)
...++++||.+- -|+||-.+|+|.+||...+
T Consensus 182 aIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 182 AIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred hhheeccCCCCc-eeEEecCCCeEEEEeccCC
Confidence 456899999554 5688899999999998654
No 371
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=22.19 E-value=2.2e+02 Score=18.54 Aligned_cols=20 Identities=20% Similarity=0.677 Sum_probs=15.9
Q ss_pred CEEEEEeCCCC-cEEEEEecC
Q 023927 123 RFLYFSNWLHG-DIRQYNIED 142 (275)
Q Consensus 123 rfLYVSNrg~~-sIavfdI~~ 142 (275)
++||-+.++.+ +|.+-+.+.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dG 21 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDG 21 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTS
T ss_pred CEEEEEECCCCcEEEEEECCC
Confidence 47999999999 887777633
No 372
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=21.69 E-value=3.6e+02 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.3
Q ss_pred eEEEEcCCCCEEEEE--eC----CCCcEEEEEecCC
Q 023927 114 TDFLISLDDRFLYFS--NW----LHGDIRQYNIEDP 143 (275)
Q Consensus 114 adI~iSpDgrfLYVS--Nr----g~~sIavfdI~~~ 143 (275)
..|.|++||.- |+. +. --+.|.+++..++
T Consensus 147 ~~~~i~~dG~I-~~~~~~~~~~~~~g~l~~~~~~~~ 181 (261)
T PRK12693 147 TSITIGTDGTV-SVTQAGQAAPQVVGQITLTDFINP 181 (261)
T ss_pred ceEEECCCCeE-EEecCCCcccccccceeEEecCCh
Confidence 58999999994 663 22 1356777776554
No 373
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.57 E-value=8e+02 Score=24.34 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCCeeEEEECCCC-Cc---------------cc-eEEEEEeCCCCCEEEEeecc
Q 023927 27 GRHLFVYSWPDGELKQTLDLGNT-GL---------------IP-LEIRFLHDPSKDIGFVGCAL 73 (275)
Q Consensus 27 ~d~I~v~d~~~~k~~~~i~Lg~~-G~---------------gP-~~v~f~f~P~g~~~YV~~eL 73 (275)
...|+.+|.+++|.+=+.++... .. ++ ..-..++++.+..+|+....
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~ 237 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN 237 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC
Confidence 45788999999987766665321 00 00 00013457788899999754
No 374
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.51 E-value=1.2e+02 Score=19.11 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.3
Q ss_pred CCCEEEEEeCCCCcEEEEEe
Q 023927 121 DDRFLYFSNWLHGDIRQYNI 140 (275)
Q Consensus 121 DgrfLYVSNrg~~sIavfdI 140 (275)
++..||+.+. .+.|.+||.
T Consensus 20 ~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 20 AGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp CTSEEEEE-T-TSEEEEEET
T ss_pred ECCEEEEEcC-CCEEEEEeC
Confidence 4668999998 677888875
No 375
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=21.30 E-value=7.5e+02 Score=24.77 Aligned_cols=128 Identities=9% Similarity=0.043 Sum_probs=0.0
Q ss_pred CeEEEEECCCCCeeEEEECCC-CCccceEEEEEeCCCCCEEEEeec------cCCcEEEEEeCCCCCeeEEEEEEecCcc
Q 023927 28 RHLFVYSWPDGELKQTLDLGN-TGLIPLEIRFLHDPSKDIGFVGCA------LASTMVRFSKTQDGSWNHEVAISVKSLK 100 (275)
Q Consensus 28 d~I~v~d~~~~k~~~~i~Lg~-~G~gP~~v~f~f~P~g~~~YV~~e------L~stV~~~~~~~~G~~~~~~vi~i~~~~ 100 (275)
+.|+.||+.+++...--..+. +...-.|.+.++. +++||-+. +.+.++++...... |...++.--.|..
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g---~~l~vfGG~~~~~~~~ndl~i~d~~~~~-W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG---TKLVVFGGIGGTGDSLNDLHIYDLETST-WSELDTQGEAPSP 214 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEEC---CEEEEECCccCcccceeeeeeecccccc-ceecccCCCCCCC
Q ss_pred ccccccCCCCCceeEEEEcCCCCEEEE------EeCCCCcEEEEEecCCCCCeEEEEEEecceeecCCceeeecCCCCCC
Q 023927 101 VQNWILPEMPGLITDFLISLDDRFLYF------SNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPY 174 (275)
Q Consensus 101 ~~g~~~~~~~~~~adI~iSpDgrfLYV------SNrg~~sIavfdI~~~~~~~lv~~v~~gG~~~~~~~~~v~~~~~~~~ 174 (275)
..+.. +.--+..+|+ -++.-+++..+|++. .+.. .....|.+|.
T Consensus 215 R~gH~------------~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~---~~W~-~~~~~g~~p~-------------- 264 (482)
T KOG0379|consen 215 RYGHA------------MVVVGNKLLVFGGGDDGDVYLNDVHILDLST---WEWK-LLPTGGDLPS-------------- 264 (482)
T ss_pred CCCce------------EEEECCeEEEEeccccCCceecceEeeeccc---ceee-eccccCCCCC--------------
Q ss_pred CCCCccccCcccCCCCce-EEECCCCCEEEE
Q 023927 175 QSDVPEVQGHRLRGGPQM-IQLSLDGKRLYV 204 (275)
Q Consensus 175 ~~~~~~~~G~~~~g~Pr~-~~LSpDGk~LyV 204 (275)
||+ +.+.-.|+.+++
T Consensus 265 ---------------~R~~h~~~~~~~~~~l 280 (482)
T KOG0379|consen 265 ---------------PRSGHSLTVSGDHLLL 280 (482)
T ss_pred ---------------CcceeeeEEECCEEEE
No 376
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=20.66 E-value=3.6e+02 Score=24.71 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=17.2
Q ss_pred eEEEEcCCCCEEEEE--eC----CCCcEEEEEecCC
Q 023927 114 TDFLISLDDRFLYFS--NW----LHGDIRQYNIEDP 143 (275)
Q Consensus 114 adI~iSpDgrfLYVS--Nr----g~~sIavfdI~~~ 143 (275)
.++.|++||.- ++. +. .-+.|.++...++
T Consensus 147 ~~~~i~~dG~i-~~~~~~~~~~~~vg~l~lv~~~~~ 181 (262)
T PRK12691 147 TSITINASGQV-SATLDGQTQPQLLGQITLARFTNE 181 (262)
T ss_pred ceEEECCCCEE-EEEcCCCccceeeeeeEEEecCCh
Confidence 58999999995 542 22 1245555555443
No 377
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=20.62 E-value=1.3e+02 Score=25.02 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=24.7
Q ss_pred CceEEECCCCCEEEEEeCCCCCcccccccccccCCcEEEEEEeeCCCCCe
Q 023927 190 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM 239 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVANsl~~~wd~Q~yp~~~~~~~~~~~~d~d~~~G~l 239 (275)
=|.++|+|.|-||.--+.=-.--=.++|...+.+-. +-+||+||..
T Consensus 9 ~R~i~LDp~GYfiI~~d~~~~~i~a~h~~n~I~~~G----la~Dpetge~ 54 (119)
T PF14251_consen 9 QRFIDLDPAGYFIIYVDREAGEICAEHYTNDIDDKG----LAVDPETGEV 54 (119)
T ss_pred cCccccCCCccEEEEEeCCCCeeeHhhccCccCccc----ceeCCCCCCE
Confidence 467888998887764431000001134444432221 4558899986
No 378
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=20.56 E-value=6.4e+02 Score=24.57 Aligned_cols=103 Identities=8% Similarity=0.063 Sum_probs=59.1
Q ss_pred cCCeEEEEECCCCCe-eEEEECCCCCccceE---EEEEeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccc
Q 023927 26 YGRHLFVYSWPDGEL-KQTLDLGNTGLIPLE---IRFLHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKV 101 (275)
Q Consensus 26 ~~d~I~v~d~~~~k~-~~~i~Lg~~G~gP~~---v~f~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~ 101 (275)
-.++|.+|+++..+. ++.+.....-.+-.+ -++-+|-+|+.+-+.+ ++++..+.-. +-.+...|....
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--d~tl~~~D~R-----T~~~~~sI~dAH- 213 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--DSTLQFWDLR-----TMKKNNSIEDAH- 213 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--CCcEEEEEcc-----chhhhcchhhhh-
Confidence 467888888887644 443333211111111 1254455777655553 3555555321 112233333211
Q ss_pred cccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEEEecCCC
Q 023927 102 QNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK 144 (275)
Q Consensus 102 ~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavfdI~~~~ 144 (275)
| ...-++-..|+-++..|||-.++-|+.||...+.
T Consensus 214 -g-------q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk 248 (370)
T KOG1007|consen 214 -G-------QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK 248 (370)
T ss_pred -c-------ceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence 1 2345778899999999999999999999986643
No 379
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.29 E-value=4.7e+02 Score=28.69 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=45.1
Q ss_pred EeCCCCCEEEEeeccCCcEEEEEeCCCCCeeEEEEEEecCccccccccCCCCCceeEEEEcCCCCEEEEEeCCCCcEEEE
Q 023927 59 LHDPSKDIGFVGCALASTMVRFSKTQDGSWNHEVAISVKSLKVQNWILPEMPGLITDFLISLDDRFLYFSNWLHGDIRQY 138 (275)
Q Consensus 59 ~f~P~g~~~YV~~eL~stV~~~~~~~~G~~~~~~vi~i~~~~~~g~~~~~~~~~~adI~iSpDgrfLYVSNrg~~sIavf 138 (275)
.+++..+++||+.|- +-|..+. -.+|..-.+|++.-.+... |. .-+- -||-|||+||+.|-..+ +-.+
T Consensus 42 ~~~t~~~rlivsT~~-~vlAsL~-~~tGei~WRqvl~~~~~~~-~~-------~~~~-~iS~dg~~lr~wn~~~g-~l~~ 109 (910)
T KOG2103|consen 42 VYDTKSKRLIVSTEK-GVLASLN-LRTGEIIWRQVLEPKTSGL-GV-------PLTN-TISVDGRYLRSWNTNNG-ILDW 109 (910)
T ss_pred eecCCCceEEEEecc-chhheec-ccCCcEEEEEeccCCCccc-Cc-------ceeE-EEccCCcEEEeecCCCc-eeee
Confidence 458899999999885 2222222 2467777788876554332 22 1122 39999999999998665 3335
Q ss_pred Ee
Q 023927 139 NI 140 (275)
Q Consensus 139 dI 140 (275)
.|
T Consensus 110 ~i 111 (910)
T KOG2103|consen 110 EI 111 (910)
T ss_pred ec
Confidence 55
No 380
>PRK13684 Ycf48-like protein; Provisional
Probab=20.29 E-value=5.3e+02 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=11.8
Q ss_pred CceEEECCCCCEEEEEe
Q 023927 190 PQMIQLSLDGKRLYVTN 206 (275)
Q Consensus 190 Pr~~~LSpDGk~LyVAN 206 (275)
.+.+.++++|+.+.|++
T Consensus 217 l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 217 LQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceeeeEcCCCCEEEEec
Confidence 66778888887655544
No 381
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=20.04 E-value=3.7e+02 Score=24.71 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=21.2
Q ss_pred ceeEEEEcCC-CC--EEEEEeCCC----CcEEEEEecCCC
Q 023927 112 LITDFLISLD-DR--FLYFSNWLH----GDIRQYNIEDPK 144 (275)
Q Consensus 112 ~~adI~iSpD-gr--fLYVSNrg~----~sIavfdI~~~~ 144 (275)
.|..+.|.++ .+ .+.|-|.+. =.|++|.|++|+
T Consensus 21 ~Pi~~~i~a~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG 60 (234)
T PRK15308 21 YPMAAEIGAGREEATSLFVYSKSDHTQYVRTRIKRIEHPA 60 (234)
T ss_pred EEeEEEecCCCcceEEEEEEeCCCCcEEEEEEEEEEcCCC
Confidence 4456666554 32 677777765 357888887654
Done!