Query 023929
Match_columns 275
No_of_seqs 169 out of 1294
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 1E-36 2.2E-41 254.2 21.1 194 3-216 10-203 (211)
2 KOG0406 Glutathione S-transfer 100.0 3.9E-34 8.5E-39 234.6 21.9 205 3-220 9-216 (231)
3 PLN02473 glutathione S-transfe 100.0 1.2E-33 2.6E-38 236.0 19.3 205 1-215 1-211 (214)
4 PLN02395 glutathione S-transfe 100.0 1.4E-32 3E-37 229.8 20.1 201 1-216 1-211 (215)
5 PRK15113 glutathione S-transfe 100.0 8.9E-33 1.9E-37 230.9 16.9 198 1-217 1-210 (214)
6 TIGR01262 maiA maleylacetoacet 100.0 5.9E-32 1.3E-36 225.1 19.3 199 5-216 1-205 (210)
7 PRK10357 putative glutathione 100.0 7.8E-32 1.7E-36 223.1 19.8 196 4-215 1-200 (202)
8 PRK10542 glutathionine S-trans 100.0 2.4E-32 5.3E-37 225.9 16.3 190 4-215 1-197 (201)
9 PRK13972 GSH-dependent disulfi 100.0 2E-32 4.3E-37 228.9 15.8 195 4-216 2-206 (215)
10 COG0625 Gst Glutathione S-tran 100.0 4.3E-31 9.3E-36 220.2 19.2 190 4-210 1-199 (211)
11 PRK11752 putative S-transferas 100.0 1.7E-30 3.6E-35 223.4 19.6 201 3-217 44-260 (264)
12 KOG0868 Glutathione S-transfer 100.0 1.6E-30 3.5E-35 200.8 15.7 200 3-218 5-210 (217)
13 PLN02378 glutathione S-transfe 100.0 2.8E-30 6.2E-35 215.5 17.3 184 8-218 16-202 (213)
14 TIGR00862 O-ClC intracellular 100.0 1E-29 2.2E-34 213.4 20.6 187 9-219 16-224 (236)
15 PTZ00057 glutathione s-transfe 100.0 1.3E-29 2.7E-34 210.4 17.4 190 1-217 1-201 (205)
16 PLN02817 glutathione dehydroge 100.0 4.6E-29 1E-33 213.7 18.8 183 9-218 70-254 (265)
17 KOG0867 Glutathione S-transfer 100.0 7.1E-29 1.5E-33 208.3 16.1 199 3-215 2-209 (226)
18 KOG1695 Glutathione S-transfer 100.0 9.8E-29 2.1E-33 201.5 15.7 195 1-217 1-202 (206)
19 PRK10387 glutaredoxin 2; Provi 100.0 2.4E-27 5.1E-32 197.4 16.6 192 4-210 1-208 (210)
20 KOG4420 Uncharacterized conser 99.9 5E-27 1.1E-31 191.6 13.2 247 3-257 26-325 (325)
21 TIGR02182 GRXB Glutaredoxin, G 99.9 1.9E-25 4.2E-30 185.8 16.8 190 5-210 1-207 (209)
22 PLN02907 glutamate-tRNA ligase 99.9 1.3E-21 2.9E-26 186.9 16.3 157 1-208 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 4.9E-21 1.1E-25 152.5 15.1 187 10-219 19-209 (221)
24 PF13417 GST_N_3: Glutathione 99.8 5.9E-19 1.3E-23 122.6 8.8 74 6-80 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 4.7E-18 1E-22 117.3 9.3 73 4-77 1-73 (73)
26 cd03058 GST_N_Tau GST_N family 99.7 1.3E-17 2.8E-22 115.6 9.1 74 4-77 1-74 (74)
27 cd03052 GST_N_GDAP1 GST_N fami 99.7 8.7E-18 1.9E-22 116.0 7.9 70 4-74 1-73 (73)
28 cd03041 GST_N_2GST_N GST_N fam 99.7 1.3E-17 2.9E-22 116.4 8.7 73 4-77 2-77 (77)
29 cd03061 GST_N_CLIC GST_N famil 99.7 2.1E-17 4.5E-22 117.8 8.7 70 10-80 20-89 (91)
30 cd03045 GST_N_Delta_Epsilon GS 99.7 2.4E-17 5.1E-22 114.1 8.3 71 4-75 1-74 (74)
31 cd03076 GST_N_Pi GST_N family, 99.7 2.1E-17 4.5E-22 114.2 7.0 73 3-76 1-73 (73)
32 cd03053 GST_N_Phi GST_N family 99.7 6E-17 1.3E-21 112.7 8.9 72 4-76 2-76 (76)
33 cd03060 GST_N_Omega_like GST_N 99.7 5.1E-17 1.1E-21 111.6 8.4 69 4-73 1-70 (71)
34 cd03050 GST_N_Theta GST_N fami 99.7 7.2E-17 1.6E-21 112.4 9.1 73 4-77 1-76 (76)
35 cd03048 GST_N_Ure2p_like GST_N 99.7 1.2E-16 2.6E-21 112.6 9.0 73 4-78 2-80 (81)
36 cd03056 GST_N_4 GST_N family, 99.7 1.3E-16 2.8E-21 110.0 8.0 70 4-74 1-73 (73)
37 KOG3029 Glutathione S-transfer 99.7 8.8E-16 1.9E-20 127.3 14.2 192 3-205 90-354 (370)
38 KOG4244 Failed axon connection 99.7 4.6E-16 9.9E-21 128.5 11.9 190 4-205 46-272 (281)
39 cd03039 GST_N_Sigma_like GST_N 99.7 1.2E-16 2.6E-21 110.1 6.7 71 4-75 1-72 (72)
40 cd03044 GST_N_EF1Bgamma GST_N 99.7 2.5E-16 5.4E-21 109.4 8.0 70 5-75 2-74 (75)
41 cd03047 GST_N_2 GST_N family, 99.7 2.8E-16 6E-21 108.5 7.9 70 4-74 1-73 (73)
42 cd03046 GST_N_GTT1_like GST_N 99.7 4.4E-16 9.6E-21 108.2 8.7 73 4-78 1-76 (76)
43 cd03049 GST_N_3 GST_N family, 99.7 2.8E-16 6E-21 108.5 7.5 70 4-74 1-73 (73)
44 cd03037 GST_N_GRX2 GST_N famil 99.7 3.5E-16 7.5E-21 107.4 7.8 70 4-75 1-71 (71)
45 cd03055 GST_N_Omega GST_N fami 99.7 4.5E-16 9.7E-21 111.7 8.3 71 3-74 18-89 (89)
46 cd03051 GST_N_GTT2_like GST_N 99.7 3.3E-16 7E-21 108.2 7.3 70 4-74 1-74 (74)
47 cd03057 GST_N_Beta GST_N famil 99.6 7.5E-16 1.6E-20 107.4 8.5 73 4-78 1-77 (77)
48 cd03077 GST_N_Alpha GST_N fami 99.6 1E-15 2.2E-20 107.3 8.9 72 3-78 1-77 (79)
49 cd03040 GST_N_mPGES2 GST_N fam 99.6 8.9E-16 1.9E-20 107.1 8.3 72 3-77 1-76 (77)
50 cd03042 GST_N_Zeta GST_N famil 99.6 7.6E-16 1.6E-20 106.1 7.7 70 4-74 1-73 (73)
51 cd03075 GST_N_Mu GST_N family, 99.6 9.6E-16 2.1E-20 108.2 7.9 73 4-77 1-82 (82)
52 cd03080 GST_N_Metaxin_like GST 99.6 1.7E-15 3.7E-20 105.1 8.8 67 4-78 2-75 (75)
53 cd03185 GST_C_Tau GST_C family 99.6 6.6E-15 1.4E-19 112.4 10.9 118 87-218 1-118 (126)
54 PF02798 GST_N: Glutathione S- 99.6 5.2E-15 1.1E-19 102.9 7.9 71 5-75 2-76 (76)
55 PF13409 GST_N_2: Glutathione 99.6 3.9E-15 8.4E-20 101.9 7.1 65 11-76 1-70 (70)
56 COG0435 ECM4 Predicted glutath 99.6 4.9E-15 1.1E-19 122.8 8.6 204 3-221 51-292 (324)
57 cd03038 GST_N_etherase_LigE GS 99.6 6.2E-15 1.3E-19 104.6 7.6 67 10-78 14-84 (84)
58 COG2999 GrxB Glutaredoxin 2 [P 99.6 3E-14 6.6E-19 110.7 11.5 194 4-210 1-208 (215)
59 cd03186 GST_C_SspA GST_N famil 99.6 2.4E-14 5.2E-19 106.2 10.0 106 87-212 1-106 (107)
60 cd03190 GST_C_ECM4_like GST_C 99.6 4.5E-14 9.8E-19 110.3 11.0 123 88-223 3-126 (142)
61 cd03043 GST_N_1 GST_N family, 99.5 2.8E-14 6E-19 98.5 8.4 66 8-74 6-73 (73)
62 cd00570 GST_N_family Glutathio 99.5 2.2E-14 4.9E-19 97.2 7.8 70 4-74 1-71 (71)
63 cd03196 GST_C_5 GST_C family, 99.5 3.2E-14 7E-19 107.1 9.2 113 85-212 2-114 (115)
64 cd03184 GST_C_Omega GST_C fami 99.5 1.1E-13 2.4E-18 105.5 9.8 116 89-221 2-119 (124)
65 cd03188 GST_C_Beta GST_C famil 99.5 1.1E-13 2.4E-18 103.5 8.4 109 89-213 2-114 (114)
66 cd03054 GST_N_Metaxin GST_N fa 99.5 1.4E-13 3E-18 94.7 7.9 64 5-76 2-72 (72)
67 cd03189 GST_C_GTT1_like GST_C 99.5 3.3E-13 7.1E-18 101.9 10.1 109 84-207 2-119 (119)
68 cd03191 GST_C_Zeta GST_C famil 99.5 3.4E-13 7.5E-18 102.2 10.1 114 87-215 1-119 (121)
69 cd03178 GST_C_Ure2p_like GST_C 99.5 1.7E-13 3.8E-18 102.4 8.3 111 89-213 1-112 (113)
70 cd03209 GST_C_Mu GST_C family, 99.5 2.6E-13 5.6E-18 103.0 8.9 111 89-218 2-112 (121)
71 cd03187 GST_C_Phi GST_C family 99.5 5.1E-13 1.1E-17 100.6 9.9 112 89-213 2-118 (118)
72 KOG2903 Predicted glutathione 99.5 1.3E-13 2.9E-18 113.3 7.0 205 3-223 37-296 (319)
73 cd03182 GST_C_GTT2_like GST_C 99.5 6.7E-13 1.5E-17 99.8 10.2 111 86-209 1-117 (117)
74 cd03198 GST_C_CLIC GST_C famil 99.4 8.1E-13 1.7E-17 101.2 9.2 97 120-219 15-128 (134)
75 cd03203 GST_C_Lambda GST_C fam 99.4 4.1E-12 8.8E-17 96.3 11.6 110 86-218 1-114 (120)
76 cd03177 GST_C_Delta_Epsilon GS 99.4 1.1E-12 2.3E-17 99.1 7.7 109 89-213 2-110 (118)
77 cd03210 GST_C_Pi GST_C family, 99.4 1.7E-12 3.7E-17 99.2 8.6 111 89-219 3-116 (126)
78 cd03180 GST_C_2 GST_C family, 99.4 3.9E-12 8.5E-17 94.4 10.0 106 89-209 2-110 (110)
79 cd03181 GST_C_EFB1gamma GST_C 99.4 2E-12 4.3E-17 98.1 7.8 116 89-217 1-118 (123)
80 cd03200 GST_C_JTV1 GST_C famil 99.4 2.5E-12 5.5E-17 93.4 7.4 96 70-206 1-96 (96)
81 cd03208 GST_C_Alpha GST_C fami 99.4 4E-12 8.6E-17 98.6 8.9 110 88-218 2-118 (137)
82 cd03207 GST_C_8 GST_C family, 99.3 1.8E-12 3.8E-17 95.4 5.1 78 129-215 25-102 (103)
83 cd03183 GST_C_Theta GST_C fami 99.3 7.7E-12 1.7E-16 95.4 8.9 114 90-213 2-120 (126)
84 cd03206 GST_C_7 GST_C family, 99.3 5.9E-12 1.3E-16 92.2 7.4 71 131-209 30-100 (100)
85 PF00043 GST_C: Glutathione S- 99.3 5.9E-12 1.3E-16 91.1 7.3 73 129-207 23-95 (95)
86 cd03201 GST_C_DHAR GST_C famil 99.3 3.2E-11 7E-16 91.5 10.3 83 133-218 29-113 (121)
87 cd03079 GST_N_Metaxin2 GST_N f 99.2 3.2E-11 7E-16 82.6 7.0 60 10-76 15-74 (74)
88 cd03195 GST_C_4 GST_C family, 99.2 1.8E-11 3.9E-16 91.9 5.6 110 87-214 1-112 (114)
89 PF13410 GST_C_2: Glutathione 99.2 2.4E-11 5.3E-16 82.6 5.1 68 130-202 2-69 (69)
90 cd03204 GST_C_GDAP1 GST_C fami 99.2 5.9E-11 1.3E-15 88.1 7.3 77 128-209 23-111 (111)
91 cd03179 GST_C_1 GST_C family, 99.2 3.4E-11 7.4E-16 88.6 5.2 103 89-204 2-105 (105)
92 TIGR02190 GlrX-dom Glutaredoxi 99.2 1.3E-10 2.8E-15 81.3 7.8 71 3-74 9-79 (79)
93 PRK10638 glutaredoxin 3; Provi 99.2 1.9E-10 4.1E-15 81.2 8.5 74 1-75 1-75 (83)
94 KOG3027 Mitochondrial outer me 99.2 4.2E-10 9.1E-15 89.9 10.8 183 11-205 33-247 (257)
95 cd03194 GST_C_3 GST_C family, 99.1 1.5E-10 3.3E-15 86.9 5.0 71 133-214 40-113 (114)
96 PF14497 GST_C_3: Glutathione 99.1 1.4E-10 3.1E-15 84.7 4.1 68 129-205 30-99 (99)
97 cd03029 GRX_hybridPRX5 Glutare 99.0 1.4E-09 3E-14 74.6 8.3 71 3-74 2-72 (72)
98 cd03192 GST_C_Sigma_like GST_C 99.0 6.5E-10 1.4E-14 81.7 7.1 97 89-203 2-104 (104)
99 cd03202 GST_C_etherase_LigE GS 99.0 1.1E-09 2.3E-14 83.5 6.5 69 131-205 55-123 (124)
100 cd00299 GST_C_family Glutathio 99.0 1.5E-09 3.2E-14 78.6 6.4 70 129-203 31-100 (100)
101 cd03193 GST_C_Metaxin GST_C fa 98.9 2E-09 4.4E-14 76.7 4.6 71 131-204 16-88 (88)
102 cd03078 GST_N_Metaxin1_like GS 98.9 1.2E-08 2.6E-13 70.0 7.9 59 10-76 14-72 (73)
103 cd03027 GRX_DEP Glutaredoxin ( 98.8 1.5E-08 3.3E-13 69.6 7.6 68 3-71 2-70 (73)
104 cd03197 GST_C_mPGES2 GST_C fam 98.8 2E-08 4.3E-13 77.8 6.7 68 133-205 78-145 (149)
105 PRK10329 glutaredoxin-like pro 98.7 4.8E-08 1E-12 68.5 7.3 61 3-64 2-62 (81)
106 cd02066 GRX_family Glutaredoxi 98.7 6.5E-08 1.4E-12 65.5 7.7 69 3-72 1-70 (72)
107 cd03205 GST_C_6 GST_C family, 98.7 7.8E-08 1.7E-12 69.9 7.8 68 128-203 31-98 (98)
108 TIGR02196 GlrX_YruB Glutaredox 98.7 8.3E-08 1.8E-12 65.4 7.4 69 4-73 2-73 (74)
109 cd02976 NrdH NrdH-redoxin (Nrd 98.7 7.3E-08 1.6E-12 65.5 6.9 63 3-66 1-64 (73)
110 cd03418 GRX_GRXb_1_3_like Glut 98.7 1.3E-07 2.8E-12 65.1 7.9 71 3-74 1-73 (75)
111 cd03211 GST_C_Metaxin2 GST_C f 98.6 7.7E-08 1.7E-12 73.4 5.6 75 128-204 51-126 (126)
112 KOG3028 Translocase of outer m 98.6 1.9E-06 4.2E-11 73.6 14.3 185 11-205 16-233 (313)
113 PF14834 GST_C_4: Glutathione 98.6 2.6E-07 5.7E-12 67.6 7.5 111 86-214 1-113 (117)
114 COG0695 GrxC Glutaredoxin and 98.6 4.2E-07 9.2E-12 63.5 8.1 69 3-72 2-73 (80)
115 TIGR02181 GRX_bact Glutaredoxi 98.5 4.9E-07 1.1E-11 63.0 7.5 71 4-75 1-72 (79)
116 cd03212 GST_C_Metaxin1_3 GST_C 98.5 1.7E-07 3.8E-12 72.5 5.6 75 129-205 59-134 (137)
117 TIGR02194 GlrX_NrdH Glutaredox 98.5 4.7E-07 1E-11 61.9 6.6 57 4-61 1-57 (72)
118 PRK11200 grxA glutaredoxin 1; 98.5 1.1E-06 2.3E-11 62.2 8.5 77 2-78 1-84 (85)
119 PF00462 Glutaredoxin: Glutare 98.4 5.2E-07 1.1E-11 59.3 5.1 59 4-63 1-60 (60)
120 TIGR02200 GlrX_actino Glutared 98.4 9.6E-07 2.1E-11 60.8 6.6 70 3-73 1-75 (77)
121 TIGR02183 GRXA Glutaredoxin, G 98.3 3.6E-06 7.8E-11 59.7 8.1 75 4-78 2-83 (86)
122 cd03419 GRX_GRXh_1_2_like Glut 98.3 5E-06 1.1E-10 58.0 8.6 72 3-75 1-76 (82)
123 TIGR02189 GlrX-like_plant Glut 98.3 4.1E-06 8.9E-11 61.0 8.2 70 3-73 9-82 (99)
124 PHA03050 glutaredoxin; Provisi 98.2 1E-05 2.2E-10 59.9 8.8 68 3-71 14-88 (108)
125 TIGR00365 monothiol glutaredox 98.1 2.1E-05 4.5E-10 57.1 7.9 71 3-74 13-89 (97)
126 cd03028 GRX_PICOT_like Glutare 98.1 2.9E-05 6.3E-10 55.5 8.0 70 3-73 9-84 (90)
127 TIGR02180 GRX_euk Glutaredoxin 98.0 3.8E-05 8.2E-10 53.7 8.4 71 4-75 1-77 (84)
128 PRK12759 bifunctional gluaredo 97.8 9.8E-05 2.1E-09 67.6 8.5 70 1-71 1-79 (410)
129 cd03031 GRX_GRX_like Glutaredo 97.7 0.00025 5.5E-09 55.3 8.1 71 3-74 1-82 (147)
130 PF10568 Tom37: Outer mitochon 97.6 0.00029 6.4E-09 48.0 6.8 55 11-73 13-71 (72)
131 PRK10824 glutaredoxin-4; Provi 97.5 0.00069 1.5E-08 50.5 7.7 71 3-74 16-92 (115)
132 cd02973 TRX_GRX_like Thioredox 97.1 0.0023 5.1E-08 42.5 6.1 58 3-64 2-64 (67)
133 KOG1752 Glutaredoxin and relat 97.1 0.0042 9E-08 45.4 7.7 71 3-74 15-89 (104)
134 COG4545 Glutaredoxin-related p 97.0 0.0024 5.2E-08 42.9 5.6 63 1-64 1-77 (85)
135 PTZ00062 glutaredoxin; Provisi 97.0 0.0043 9.2E-08 51.2 7.9 70 3-73 114-189 (204)
136 PF04399 Glutaredoxin2_C: Glut 96.9 0.0048 1E-07 47.1 7.0 68 132-209 57-124 (132)
137 cd03199 GST_C_GRX2 GST_C famil 96.6 0.013 2.8E-07 44.4 7.6 67 133-209 59-125 (128)
138 PRK10026 arsenate reductase; P 96.6 0.0037 8.1E-08 48.3 4.6 35 1-35 1-35 (141)
139 PRK01655 spxA transcriptional 96.6 0.0059 1.3E-07 46.8 5.6 32 4-35 2-33 (131)
140 cd03036 ArsC_like Arsenate Red 96.5 0.0055 1.2E-07 45.5 5.2 33 4-36 1-33 (111)
141 cd02977 ArsC_family Arsenate R 96.5 0.0065 1.4E-07 44.5 5.4 33 4-36 1-33 (105)
142 cd03032 ArsC_Spx Arsenate Redu 96.5 0.0079 1.7E-07 44.9 5.7 32 4-35 2-33 (115)
143 PRK13344 spxA transcriptional 96.3 0.013 2.7E-07 45.0 5.9 33 4-36 2-34 (132)
144 KOG1147 Glutamyl-tRNA syntheta 96.2 0.0018 3.9E-08 59.6 1.2 123 53-212 38-161 (712)
145 PRK12559 transcriptional regul 96.2 0.013 2.7E-07 44.9 5.7 33 4-36 2-34 (131)
146 TIGR00412 redox_disulf_2 small 96.2 0.031 6.7E-07 38.3 6.9 57 1-64 1-61 (76)
147 TIGR01617 arsC_related transcr 96.0 0.011 2.3E-07 44.4 4.3 32 4-35 1-32 (117)
148 cd03035 ArsC_Yffb Arsenate Red 95.8 0.024 5.2E-07 41.6 5.3 32 4-35 1-32 (105)
149 COG1393 ArsC Arsenate reductas 95.7 0.031 6.7E-07 41.9 5.7 32 4-35 3-34 (117)
150 cd03033 ArsC_15kD Arsenate Red 95.6 0.033 7.1E-07 41.5 5.5 32 4-35 2-33 (113)
151 PF05768 DUF836: Glutaredoxin- 95.6 0.052 1.1E-06 37.7 6.3 55 3-60 1-57 (81)
152 cd03030 GRX_SH3BGR Glutaredoxi 95.5 0.11 2.5E-06 37.0 7.8 68 4-72 2-80 (92)
153 TIGR01616 nitro_assoc nitrogen 95.2 0.06 1.3E-06 40.9 5.7 33 3-35 2-34 (126)
154 PRK10853 putative reductase; P 95.0 0.066 1.4E-06 40.2 5.5 32 4-35 2-33 (118)
155 TIGR00411 redox_disulf_1 small 94.0 0.28 6E-06 33.5 6.5 57 3-61 2-62 (82)
156 PF13192 Thioredoxin_3: Thiore 94.0 0.38 8.3E-06 32.8 7.0 57 4-66 3-63 (76)
157 cd01659 TRX_superfamily Thiore 93.9 0.16 3.5E-06 31.8 5.0 54 4-58 1-59 (69)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 93.9 0.22 4.8E-06 35.3 5.9 58 3-64 15-77 (89)
159 TIGR00014 arsC arsenate reduct 93.9 0.16 3.5E-06 37.8 5.3 32 4-35 1-32 (114)
160 cd03034 ArsC_ArsC Arsenate Red 93.8 0.099 2.1E-06 38.8 4.2 32 4-35 1-32 (112)
161 COG0278 Glutaredoxin-related p 93.7 0.35 7.7E-06 34.7 6.4 69 3-75 16-94 (105)
162 PHA02125 thioredoxin-like prot 93.4 0.35 7.7E-06 32.8 6.1 53 4-61 2-54 (75)
163 PF04908 SH3BGR: SH3-binding, 91.2 1.4 2.9E-05 31.9 7.0 71 1-73 1-87 (99)
164 PF11287 DUF3088: Protein of u 91.2 0.79 1.7E-05 33.7 5.7 68 11-78 23-108 (112)
165 PF03960 ArsC: ArsC family; I 85.8 1.1 2.4E-05 32.9 3.6 29 7-35 1-29 (110)
166 PF11801 Tom37_C: Tom37 C-term 81.6 2.8 6.1E-05 33.5 4.5 38 138-176 112-153 (168)
167 KOG0911 Glutaredoxin-related p 77.3 9.3 0.0002 31.8 6.3 72 3-75 140-217 (227)
168 PF09635 MetRS-N: MetRS-N bind 77.3 1.7 3.8E-05 32.5 1.9 27 52-78 35-63 (122)
169 TIGR01295 PedC_BrcD bacterioci 75.9 16 0.00035 27.3 7.0 59 4-63 27-103 (122)
170 cd02949 TRX_NTR TRX domain, no 71.1 25 0.00054 24.6 6.8 58 4-63 17-80 (97)
171 TIGR03143 AhpF_homolog putativ 70.4 12 0.00026 35.8 6.4 58 3-64 479-541 (555)
172 cd02947 TRX_family TRX family; 68.8 31 0.00068 22.9 7.1 54 4-61 14-74 (93)
173 PF00085 Thioredoxin: Thioredo 67.8 18 0.00039 25.2 5.5 70 4-75 21-102 (103)
174 COG3019 Predicted metal-bindin 66.5 25 0.00054 27.1 6.0 75 3-77 27-104 (149)
175 PRK15317 alkyl hydroperoxide r 66.1 6.1 0.00013 37.5 3.3 72 3-76 119-197 (517)
176 cd02975 PfPDO_like_N Pyrococcu 65.9 11 0.00024 27.6 4.1 53 4-58 25-81 (113)
177 PF10022 DUF2264: Uncharacteri 65.7 27 0.00058 31.6 7.1 43 122-165 219-263 (361)
178 TIGR03140 AhpF alkyl hydropero 65.1 6.1 0.00013 37.4 3.2 72 3-76 120-198 (515)
179 cd02989 Phd_like_TxnDC9 Phosdu 63.6 45 0.00098 24.4 7.0 57 4-64 26-89 (113)
180 COG4289 Uncharacterized protei 62.4 37 0.0008 30.5 7.1 159 65-263 189-351 (458)
181 PF15468 DUF4636: Domain of un 61.4 8 0.00017 31.8 2.7 25 245-269 34-58 (243)
182 KOG1668 Elongation factor 1 be 60.5 3.3 7.1E-05 34.6 0.3 60 140-211 10-69 (231)
183 KOG2824 Glutaredoxin-related p 60.5 16 0.00035 31.4 4.5 60 14-74 149-213 (281)
184 TIGR02187 GlrX_arch Glutaredox 57.1 22 0.00049 29.3 4.9 55 3-59 136-193 (215)
185 PTZ00051 thioredoxin; Provisio 51.4 78 0.0017 21.8 6.9 56 4-63 22-84 (98)
186 cd02953 DsbDgamma DsbD gamma f 51.0 60 0.0013 22.9 5.8 53 4-58 15-78 (104)
187 cd02951 SoxW SoxW family; SoxW 46.0 92 0.002 22.8 6.3 16 4-19 18-33 (125)
188 PHA02278 thioredoxin-like prot 45.4 1.1E+02 0.0024 21.9 7.1 59 4-63 18-85 (103)
189 PHA02655 hypothetical protein; 45.4 22 0.00049 23.7 2.4 25 240-267 21-45 (94)
190 cd02984 TRX_PICOT TRX domain, 44.3 1E+02 0.0022 21.1 7.2 58 4-63 18-81 (97)
191 cd02956 ybbN ybbN protein fami 43.6 68 0.0015 22.1 5.0 57 4-62 16-78 (96)
192 cd02963 TRX_DnaJ TRX domain, D 41.8 36 0.00078 24.7 3.4 57 4-62 28-91 (111)
193 TIGR01068 thioredoxin thioredo 41.7 1.1E+02 0.0023 20.9 5.9 56 4-61 18-79 (101)
194 cd02959 ERp19 Endoplasmic reti 41.3 68 0.0015 23.6 4.8 60 4-64 23-91 (117)
195 KOG3425 Uncharacterized conser 39.8 86 0.0019 23.6 4.9 69 8-76 41-122 (128)
196 TIGR02187 GlrX_arch Glutaredox 38.1 1.3E+02 0.0028 24.7 6.6 57 3-61 22-88 (215)
197 TIGR02681 phage_pRha phage reg 37.7 30 0.00066 25.4 2.4 26 53-78 2-28 (108)
198 PF04134 DUF393: Protein of un 36.5 1.3E+02 0.0028 21.7 5.7 69 6-76 1-77 (114)
199 cd03003 PDI_a_ERdj5_N PDIa fam 35.5 53 0.0011 23.0 3.4 56 4-61 22-83 (101)
200 cd02985 TRX_CDSP32 TRX family, 35.2 1.6E+02 0.0035 20.7 7.0 59 4-63 19-84 (103)
201 PRK09381 trxA thioredoxin; Pro 34.0 1.7E+02 0.0037 20.6 8.8 58 4-63 25-88 (109)
202 PRK09266 hypothetical protein; 33.9 75 0.0016 27.1 4.6 57 21-78 200-259 (266)
203 cd02954 DIM1 Dim1 family; Dim1 33.8 1.2E+02 0.0027 22.4 5.1 57 5-63 19-81 (114)
204 PHA03075 glutaredoxin-like pro 32.3 80 0.0017 23.5 3.7 65 3-76 4-69 (123)
205 cd02994 PDI_a_TMX PDIa family, 31.7 80 0.0017 22.0 3.8 53 4-58 20-77 (101)
206 cd02957 Phd_like Phosducin (Ph 31.6 1.4E+02 0.003 21.5 5.2 57 4-65 28-91 (113)
207 cd02993 PDI_a_APS_reductase PD 31.3 1.9E+02 0.0042 20.5 6.1 53 4-57 25-83 (109)
208 PF09413 DUF2007: Domain of un 30.0 60 0.0013 21.0 2.7 33 4-36 1-33 (67)
209 PF06110 DUF953: Eukaryotic pr 28.6 78 0.0017 23.7 3.3 60 8-68 34-107 (119)
210 PF01323 DSBA: DSBA-like thior 28.6 1E+02 0.0022 24.4 4.3 35 3-37 1-40 (193)
211 PF11288 DUF3089: Protein of u 28.5 2.6E+02 0.0056 23.2 6.6 74 86-159 24-101 (207)
212 PRK13947 shikimate kinase; Pro 28.4 79 0.0017 24.6 3.6 31 1-31 1-31 (171)
213 PF06916 DUF1279: Protein of u 28.0 57 0.0012 23.0 2.4 28 245-272 8-35 (91)
214 PF13098 Thioredoxin_2: Thiore 27.8 71 0.0015 22.7 3.0 20 4-23 9-28 (112)
215 PF13728 TraF: F plasmid trans 27.7 2.3E+02 0.0049 23.5 6.3 53 4-58 124-189 (215)
216 cd02962 TMX2 TMX2 family; comp 27.6 1.4E+02 0.0031 23.2 4.8 60 4-64 51-122 (152)
217 PF04564 U-box: U-box domain; 27.5 1.5E+02 0.0032 19.7 4.3 46 52-98 15-69 (73)
218 PRK13949 shikimate kinase; Pro 27.1 87 0.0019 24.7 3.6 31 1-31 1-31 (169)
219 TIGR01126 pdi_dom protein disu 26.5 85 0.0019 21.6 3.2 52 4-57 17-74 (102)
220 KOG0190 Protein disulfide isom 26.3 2.6E+02 0.0056 26.5 6.9 73 4-78 46-133 (493)
221 PTZ00443 Thioredoxin domain-co 25.4 4E+02 0.0087 22.2 8.7 72 4-77 56-139 (224)
222 PF05496 RuvB_N: Holliday junc 24.8 1.9E+02 0.0041 24.4 5.2 42 3-44 52-93 (233)
223 cd02996 PDI_a_ERp44 PDIa famil 24.7 1.5E+02 0.0032 21.0 4.2 56 4-61 22-89 (108)
224 PRK11657 dsbG disulfide isomer 24.3 1E+02 0.0023 26.1 3.8 21 4-24 121-141 (251)
225 PF09868 DUF2095: Uncharacteri 24.2 44 0.00095 24.8 1.2 62 16-77 26-91 (128)
226 cd03020 DsbA_DsbC_DsbG DsbA fa 23.8 1E+02 0.0022 24.8 3.5 22 3-24 80-101 (197)
227 cd03006 PDI_a_EFP1_N PDIa fami 23.7 2E+02 0.0044 21.0 4.8 53 4-58 33-90 (113)
228 PF07728 AAA_5: AAA domain (dy 23.6 2.2E+02 0.0048 21.0 5.2 41 4-44 2-42 (139)
229 cd02997 PDI_a_PDIR PDIa family 23.2 2.5E+02 0.0055 19.2 6.8 54 4-58 21-81 (104)
230 cd03005 PDI_a_ERp46 PDIa famil 23.2 1.5E+02 0.0032 20.4 3.9 56 4-61 20-84 (102)
231 cd04911 ACT_AKiii-YclM-BS_1 AC 23.0 91 0.002 21.3 2.5 23 13-35 16-38 (76)
232 PRK06217 hypothetical protein; 22.9 1.1E+02 0.0024 24.3 3.5 29 1-29 1-29 (183)
233 cd03004 PDI_a_ERdj5_C PDIa fam 22.9 1.4E+02 0.003 20.8 3.8 53 4-58 23-79 (104)
234 cd02970 PRX_like2 Peroxiredoxi 22.9 1.6E+02 0.0034 22.0 4.3 49 8-60 32-89 (149)
235 cd02987 Phd_like_Phd Phosducin 22.8 3.9E+02 0.0085 21.2 7.0 58 5-65 88-150 (175)
236 cd01976 Nitrogenase_MoFe_alpha 22.2 6.2E+02 0.013 23.3 11.6 140 4-169 175-316 (421)
237 PRK10996 thioredoxin 2; Provis 22.0 3.5E+02 0.0076 20.3 9.2 58 4-63 56-119 (139)
238 PF07862 Nif11: Nitrogen fixat 22.0 75 0.0016 19.3 1.8 40 194-233 4-43 (49)
239 PRK10877 protein disulfide iso 22.0 1.4E+02 0.0031 25.0 4.1 23 3-25 110-132 (232)
240 PF00004 AAA: ATPase family as 21.9 1.7E+02 0.0037 21.1 4.2 31 4-34 1-31 (132)
241 COG3011 Predicted thiol-disulf 21.8 3.8E+02 0.0082 20.6 7.7 75 3-77 9-87 (137)
242 PRK08118 topology modulation p 21.4 1.3E+02 0.0028 23.6 3.6 30 1-30 1-30 (167)
243 cd02961 PDI_a_family Protein D 20.7 2E+02 0.0043 19.3 4.1 53 4-58 19-77 (101)
244 cd01965 Nitrogenase_MoFe_beta_ 20.5 6.7E+02 0.014 23.0 11.1 96 4-105 158-272 (428)
245 cd02948 TRX_NDPK TRX domain, T 20.1 3.2E+02 0.0069 19.1 8.1 57 4-63 21-84 (102)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1e-36 Score=254.16 Aligned_cols=194 Identities=24% Similarity=0.385 Sum_probs=166.1
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCCCC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQNPL 82 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~l 82 (275)
.++||+++.||+|++|+++|+++|++|+.+.++..+++++++++||. |+||+|+++|.+|+||.||++||+++|++..|
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999999999999999988888999999999 99999999999999999999999999998889
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCC
Q 023929 83 MPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNI 162 (275)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~ 162 (275)
+|.++.+|+++++|..+..+.+.. ........ .+...+...+.+.+.++.+ |+.|++++|++|+++
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~l~~~l~~l-e~~L~~~~~l~G~~~ 154 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYS------------LMNKIVNG-SASEADAARKQLREELLAI-APVFGEKPYFMSEEF 154 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH------------HHHHHhcC-CHHHHHHHHHHHHHHHHHH-HHHhccCCcccCCCc
Confidence 999999999999999887654321 11111122 3445566788899999999 999999999999999
Q ss_pred ChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCc
Q 023929 163 GLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNR 216 (275)
Q Consensus 163 T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~ 216 (275)
|+||+.+++.+.++... +.++. .+.+|+|++|++++.++|++++++++.
T Consensus 155 t~AD~~l~~~~~~~~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~ 203 (211)
T PRK09481 155 SLVDCYLAPLLWRLPVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEA 203 (211)
T ss_pred cHHHHHHHHHHHHHHhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHH
Confidence 99999999998877533 44432 257999999999999999999998864
No 2
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=234.55 Aligned_cols=205 Identities=44% Similarity=0.801 Sum_probs=177.9
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCC-CCC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWP-QNP 81 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~-~~~ 81 (275)
.++||++-.|||++|++++|+++||+|+.+..++.++++++++.||-+++||||+++|.++.||..|++||++.++ +++
T Consensus 9 ~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~ 88 (231)
T KOG0406|consen 9 TVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPP 88 (231)
T ss_pred eEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCC
Confidence 3899999999999999999999999999999999999999999997669999999999999999999999999999 589
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCC-CCCcccCC
Q 023929 82 LMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLR-ERNFFNGD 160 (275)
Q Consensus 82 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~-~~~fl~G~ 160 (275)
++|+||.+||+.+.|.++++..... ...........+..+.+.+++.+.|..+ |+.|. +++|+.|+
T Consensus 89 iLP~DPy~Ra~arfwa~~id~~~~~------------~~~~~~~~~~~e~~~~~~~e~~e~l~~l-E~el~k~k~~fgG~ 155 (231)
T KOG0406|consen 89 ILPSDPYERAQARFWAEYIDKKVFF------------VGRFVVAAKGGEEQEAAKEELREALKVL-EEELGKGKDFFGGE 155 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHHhHHHH------------HHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCC
Confidence 9999999999999999999987431 2233333224577888899999999999 99897 88999999
Q ss_pred CCChhHhhhHhHHHHHHHhhh-hcccccCCCCCCccHHHHHHHhcccchhhhcCCCchhHH
Q 023929 161 NIGLVDIAFGSMLYWMQVIGD-VVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDIW 220 (275)
Q Consensus 161 ~~T~ADi~l~~~l~~~~~~~~-~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~~ 220 (275)
++++.|+++++.+.+...... ..+.+....+++|+|.+|.++|.++|++++++++.+.+.
T Consensus 156 ~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~ 216 (231)
T KOG0406|consen 156 TIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVV 216 (231)
T ss_pred CcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHH
Confidence 999999999977776664333 223445557899999999999999999999999987753
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.2e-33 Score=236.04 Aligned_cols=205 Identities=19% Similarity=0.329 Sum_probs=162.6
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhC
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
|. ++||+++.||++++|+++|+++||+|+.+.++.. +++++++++||. |+||+|++||.+|+||.+|++||++++
T Consensus 1 ~~-~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 1 MV-VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKY 78 (214)
T ss_pred Cc-eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHc
Confidence 64 8999999999999999999999999999988765 567899999999 999999999999999999999999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHhCcCCCC
Q 023929 78 PQN--PLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS-ITGQELENAKKEILEILQTLEEHGLRER 154 (275)
Q Consensus 78 ~~~--~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~e~~L~~~ 154 (275)
++. .|+|.++.+|+++++|..+..+.+.... .+......+...... ......+...+++.+.++.+ |+.|+++
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~ 154 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVA---LPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVY-ENRLATN 154 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHH---HHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHH-HHHhccC
Confidence 743 6999999999999999999887654210 011111011100111 12334455678899999999 9999988
Q ss_pred CcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCC
Q 023929 155 NFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPN 215 (275)
Q Consensus 155 ~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~ 215 (275)
+|++|+++|+||+++++.+.+....... ... .+++|+|.+|++++.++|++++++..
T Consensus 155 ~~l~Gd~~t~ADi~~~~~~~~~~~~~~~--~~~--~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 155 RYLGGDEFTLADLTHMPGMRYIMNETSL--SGL--VTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHhcccc--HHH--HhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999988876432111 122 35899999999999999999998653
No 4
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.4e-32 Score=229.78 Aligned_cols=201 Identities=20% Similarity=0.361 Sum_probs=159.8
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhC
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
|+ +|||+.+.| +++|++++|+++|++|+.+.++.. .+++++++.||. |+||+|+++|.+|+||.+|++||++++
T Consensus 1 ~~-~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MV-LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred Ce-EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 76 999997654 799999999999999999998875 567899999999 999999999999999999999999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHh----h-ccchhhHHHHHHHHHHHHHHHHhCc
Q 023929 78 PQ--NPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLF----R-SITGQELENAKKEILEILQTLEEHG 150 (275)
Q Consensus 78 ~~--~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~l~~~l~~l~e~~ 150 (275)
++ ++++|.++.+++++++|+.+.+..+.. .+........+ . ...++..+...+++.+.++.+ |+.
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~ 149 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHP-------PLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVY-EAR 149 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHH-HHH
Confidence 75 369999999999999999998876542 11111111111 1 112334456788899999999 999
Q ss_pred CCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCc
Q 023929 151 LRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNR 216 (275)
Q Consensus 151 L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~ 216 (275)
|++++|++|+++|+||+++++++.++... . +.. ...+.+|+|++|++++.++|+++++++..
T Consensus 150 L~~~~~l~G~~~s~ADi~l~~~~~~~~~~--~-~~~-~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 150 LSKSKYLAGDFVSLADLAHLPFTEYLVGP--I-GKA-YLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred hcCCccccCCCcCHHHHHHHHHHHHHhcc--c-chh-hhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 99889999999999999999888776321 0 111 11457999999999999999999987753
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=8.9e-33 Score=230.86 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=157.8
Q ss_pred Cc--ceEEEecC--CChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHH
Q 023929 1 MA--EVKLHGRL--LSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYI 73 (275)
Q Consensus 1 Ms--~~~Ly~~~--~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL 73 (275)
|| .++||+.+ .||++++++++|+++||+|+.+.++.. .+.+++++.||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 55 68999976 799999999999999999999999875 356899999999 99999999999999999999999
Q ss_pred HHhCCCCC---CCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHhC
Q 023929 74 EEMWPQNP---LMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS-ITGQELENAKKEILEILQTLEEH 149 (275)
Q Consensus 74 ~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~e~ 149 (275)
+++++++. ++|.++.+|+++++|+.+....+.... ........+.. ......+...+++.+.++.+ |+
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~ 151 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLR-------EERPTDVVFAGAKKAPLSEAGKAAAEKLFAVA-ER 151 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHh-------ccCccchhccCCCCCcccHHHHHHHHHHHHHH-HH
Confidence 99998765 999999999999999999876543210 00000001111 12333456677889999999 99
Q ss_pred cCCC-CCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCch
Q 023929 150 GLRE-RNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRD 217 (275)
Q Consensus 150 ~L~~-~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~ 217 (275)
.|++ ++|++|+ +|+||+.+++.+.++... +.. . .|+|.+|++++.++|+++++++..+
T Consensus 152 ~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~----~~~---~--~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 152 LLAPGQPNLFGE-WCIADTDLALMLNRLVLH----GDE---V--PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred HHhcCCCEeeCC-ccHHHHHHHHHHHHHHHc----CCC---C--CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 9974 5799996 999999999999877432 322 1 2899999999999999999987543
No 6
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=5.9e-32 Score=225.09 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=157.6
Q ss_pred EEEecCCChHHHHHHHHHHHcCCCceEEEcCCC----CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCC
Q 023929 5 KLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS----NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQN 80 (275)
Q Consensus 5 ~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~----~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~ 80 (275)
+||+++.||+++++|++|+++||+|+.+.++.. .+.+++.+.||. |++|+|++||.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 489999999999999999999999999999862 346789999999 899999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCC--CCccc
Q 023929 81 PLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRE--RNFFN 158 (275)
Q Consensus 81 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~--~~fl~ 158 (275)
+++|.++.+++++++|+.+....+...... .+ .. ..............+...+.+.+.|+.+ |++|++ ++|++
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~ 154 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNL--RV-LQ-YLREKLGVEEEARNRWYQHWISKGFAAL-EALLQPHAGAFCV 154 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhh--hH-HH-HHHhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCEee
Confidence 899999999999999999987654321000 00 00 0111111101222333566789999999 999975 56999
Q ss_pred CCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCc
Q 023929 159 GDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNR 216 (275)
Q Consensus 159 G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~ 216 (275)
|+++|+||+.+++.+.++... +. +.+.||+|++|+++|.++|+++++..+.
T Consensus 155 G~~~T~ADi~~~~~l~~~~~~----~~---~~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 155 GDTPTLADLCLVPQVYNAERF----GV---DLTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHHc----CC---CcccchHHHHHHHHHhcCHHHHHhCccc
Confidence 999999999999998887532 22 2458999999999999999999998864
No 7
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=7.8e-32 Score=223.15 Aligned_cols=196 Identities=27% Similarity=0.351 Sum_probs=158.9
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEE-eCCeeeechHHHHHHHHHhCCCCCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLV-HGGKPVCESMIILEYIEEMWPQNPL 82 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~-~~g~~l~eS~aIl~yL~~~~~~~~l 82 (275)
++||+++.||++++||++|+++||+|+.+.++.....+++.+.||. |+||+|+ +||.+|+||.+|++||+++++++.|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999877667788889999 9999998 5789999999999999999987789
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHhCcCCCCCcccC
Q 023929 83 MPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS---ITGQELENAKKEILEILQTLEEHGLRERNFFNG 159 (275)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G 159 (275)
+|.++.+++++++|..+..+.+.. ... ........ ..++..+...+++.+.|+.+ |++|++++ ++|
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~-l~G 148 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDA-------ALV--SVREQARPAAQQSEDELLRQREKINRSLDAL-EGYLVDGT-LKT 148 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-------HHH--HHHHHhCccccccHHHHHHHHHHHHHHHHHH-HHhhccCc-ccC
Confidence 999999999999998887665442 111 11111111 12233456678899999999 99998888 999
Q ss_pred CCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCC
Q 023929 160 DNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPN 215 (275)
Q Consensus 160 ~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~ 215 (275)
+++|+||+.+++.+.+++.... +... ...+|++.+|++++.++|+++++.++
T Consensus 149 d~~t~ADi~l~~~l~~~~~~~~--~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 149 DTVNLATIAIACAVGYLNFRRV--APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred CCcCHHHHHHHHHHHHHHhccc--Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9999999999999988754211 1111 34799999999999999999998765
No 8
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=2.4e-32 Score=225.90 Aligned_cols=190 Identities=18% Similarity=0.371 Sum_probs=155.4
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC----CCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHHHhCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS----NKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~----~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~~~~~ 78 (275)
++||+.+.| ++++++++|+++||+|+.+.+++. .+.++++++||. |+||+|++ ||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 489998866 799999999999999999999875 245899999999 99999985 88999999999999999999
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHhCcCCCCCc
Q 023929 79 QNPLM-PNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSIT-GQELENAKKEILEILQTLEEHGLRERNF 156 (275)
Q Consensus 79 ~~~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~e~~L~~~~f 156 (275)
++.++ |.++.+|+++++|+.+..+.+.. .+...+.... +...+...+++.+.++.+ |+.|++++|
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~ 145 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHK------------GFTPLFRPDTPEEYKPTVRAQLEKKFQYV-DEALADEQW 145 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhh------------hhhhccCCCChHHHHHHHHHHHHHHHHHH-HHHhcCCCe
Confidence 87766 67889999999999998766442 1111121111 222345677899999999 999998999
Q ss_pred ccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCC
Q 023929 157 FNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPN 215 (275)
Q Consensus 157 l~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~ 215 (275)
++|+++|+||+++++.+.+.... +.+ .+.+|+|.+|++++.++|++++++..
T Consensus 146 l~G~~~s~ADi~l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 146 ICGQRFTIADAYLFTVLRWAYAV----KLN---LEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred eeCCCCcHHhHHHHHHHHHhhcc----CCC---cccchHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999988887432 322 35899999999999999999998764
No 9
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2e-32 Score=228.92 Aligned_cols=195 Identities=19% Similarity=0.290 Sum_probs=152.3
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEe-----CC--eeeechHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVH-----GG--KPVCESMIILEYI 73 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~-----~g--~~l~eS~aIl~yL 73 (275)
++||+.+ +|++++|+++|+++||+|+.+.+++. ++.++|+++||. |+||+|++ || .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999887 79999999999999999999999875 346899999999 99999997 45 4799999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCC
Q 023929 74 EEMWPQNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRE 153 (275)
Q Consensus 74 ~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~ 153 (275)
+++++ .+.|.++.+|+++++|+.|..+.+....... .. +........+...+...+++.+.++.+ |++|++
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~ 150 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQN-HH-----FNHAAPQTIPYAIERYQVETQRLYHVL-NKRLEN 150 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeee-ee-----eeccCCCCCchHHHHHHHHHHHHHHHH-HHHhcc
Confidence 99986 3678899999999999999877654311100 00 000000002334455677788999999 999998
Q ss_pred CCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCc
Q 023929 154 RNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNR 216 (275)
Q Consensus 154 ~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~ 216 (275)
++|++|+++|+||+++++.+...... + ++.+.+|+|.+|+++|.++|++++++...
T Consensus 151 ~~~l~Gd~~t~ADi~l~~~~~~~~~~----~---~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 151 SPWLGGENYSIADIACWPWVNAWTRQ----R---IDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CccccCCCCCHHHHHHHHHHHHHhhc----C---CcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 99999999999999998876443211 2 22458999999999999999999887643
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.3e-31 Score=220.21 Aligned_cols=190 Identities=35% Similarity=0.589 Sum_probs=158.4
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC--CCchHHHhcCCCCCcccEEEeCCe-eeechHHHHHHHHHhCCCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS--NKSDLLLKYNPVHKKIPVLVHGGK-PVCESMIILEYIEEMWPQN 80 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~--~~~~~~~~~~P~~g~vP~L~~~g~-~l~eS~aIl~yL~~~~~~~ 80 (275)
++||+.+.||+++|++++|.++|++|+.+.++.. .+.++|+++||. |+||+|+++|. +|+||.+|++||+++||++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999987 578999999999 99999998765 8999999999999999987
Q ss_pred CCCCCCHH---HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHhCcCCCC
Q 023929 81 PLMPNNPY---DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSI---TGQELENAKKEILEILQTLEEHGLRER 154 (275)
Q Consensus 81 ~l~p~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~l~e~~L~~~ 154 (275)
+++|.++. +|+++.+|..+....+.. .+....... .... .....+...+.+.+.++.+ |..|+++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~ 150 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHP-------VIGQRRRAL-LGSEPELLEAALEAARAEIRALLALL-EALLADG 150 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccH-------HHHHHHhhh-ccccccccHHHHHHHHHHHHHHHHHH-HHHhccC
Confidence 79998875 888888999998766552 222222222 1110 2455667788999999999 9999999
Q ss_pred CcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhh
Q 023929 155 NFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIE 210 (275)
Q Consensus 155 ~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~ 210 (275)
+|++|+++|+||+.+++.+.++... +.. .+.+|++.+|++|+.++|+++
T Consensus 151 ~~l~G~~~tiAD~~~~~~~~~~~~~----~~~---~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 151 PYLAGDRFTIADIALAPLLWRLALL----GEE---LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CcccCCCCCHHHHHHHHHHHHhhhc----Ccc---cccChHHHHHHHHHHcCCchh
Confidence 9999999999999999999987432 222 258999999999999999965
No 11
>PRK11752 putative S-transferase; Provisional
Probab=99.97 E-value=1.7e-30 Score=223.43 Aligned_cols=201 Identities=18% Similarity=0.242 Sum_probs=155.4
Q ss_pred ceEEEecCCChHHHHHHHHHHHc------CCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeC----CeeeechHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLK------GVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHG----GKPVCESMII 69 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~------gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~----g~~l~eS~aI 69 (275)
.++||+.+ ||++++|+++|+++ |++|+.+.++.. +..++|+++||. |+||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 48999875 99999999999997 999999998875 357899999999 999999984 3689999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHh--hcc-chhhHHHHHHHHHHHHHHH
Q 023929 70 LEYIEEMWPQNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLF--RSI-TGQELENAKKEILEILQTL 146 (275)
Q Consensus 70 l~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~l~~l 146 (275)
++||+++++. |+|.++.+|+++++|+.+....... ... .+...+ .+. .+...+...+++.+.|+.+
T Consensus 122 l~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 190 (264)
T PRK11752 122 LLYLAEKFGA--FLPKDLAARTETLNWLFWQQGSAPF--------LGG-GFGHFYAYAPEKIEYAINRFTMEAKRQLDVL 190 (264)
T ss_pred HHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhhhH--------HHH-HHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence 9999999973 9999999999999999987654220 000 011111 111 1223455567788999999
Q ss_pred HhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCch
Q 023929 147 EEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRD 217 (275)
Q Consensus 147 ~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~ 217 (275)
|+.|++++|++|+++|+||+++++.+.++.....+......+.+.+|++.+|+++|.++|++++++....
T Consensus 191 -e~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 191 -DKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred -HHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 9999988999999999999999998877643111101111234689999999999999999999877543
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=200.85 Aligned_cols=200 Identities=26% Similarity=0.423 Sum_probs=166.8
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC----CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS----NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~----~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~ 78 (275)
++.||++--|..++|||++|+.+||+|+.+++++- +...+|.+.||. ++||+|++||.+|+||.||++||++.+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 78999888888999999999999999999999875 345699999999 8999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCC--CCCc
Q 023929 79 QNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLR--ERNF 156 (275)
Q Consensus 79 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~--~~~f 156 (275)
++.|+|+|+..||.++++...+.+..+ |......++..-.........-+..-+.+.|..+ |+.|. .|+|
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQ-------PlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~AL-EklL~~~aGky 155 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQ-------PLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTAL-EKLLKSHAGKY 155 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCC-------cchhhHHHHHhcccccchhhHHHHHHHHHhHHHH-HHHHHHccCCc
Confidence 999999999999999999999998866 3333222222222212222445566677888999 99885 5789
Q ss_pred ccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 157 FNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 157 l~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
-+||++|+||+.+.+.+...+.+ . ++.+.||-+.|..+.+.+.|+|+...++.++
T Consensus 156 cvGDevtiADl~L~pqv~nA~rf----~---vdl~PYPti~ri~e~l~elpaFq~ahP~nQP 210 (217)
T KOG0868|consen 156 CVGDEVTIADLCLPPQVYNANRF----H---VDLTPYPTITRINEELAELPAFQAAHPDNQP 210 (217)
T ss_pred ccCceeehhhhccchhhhhhhhc----c---ccCCcCchHHHHHHHHHhCHHHHhcCCCCCC
Confidence 99999999999999999888543 3 3466999999999999999999999887554
No 13
>PLN02378 glutathione S-transferase DHAR1
Probab=99.97 E-value=2.8e-30 Score=215.54 Aligned_cols=184 Identities=24% Similarity=0.389 Sum_probs=144.4
Q ss_pred ecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCCCCCCCCH
Q 023929 8 GRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQNPLMPNNP 87 (275)
Q Consensus 8 ~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~l~p~~~ 87 (275)
++..||+|++|+++|+++|++|+.+.+++..++++|++.||. |+||+|++||.+|+||.+|++||++++++..+ .++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCH
Confidence 355799999999999999999999999998888999999999 99999999999999999999999999987655 357
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCC--CCCcccCCCCChh
Q 023929 88 YDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLR--ERNFFNGDNIGLV 165 (275)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~--~~~fl~G~~~T~A 165 (275)
.+++.+++.+... +. ..+.. ....+...+.+.+.|+.+ |+.|+ +++|++|+++|+|
T Consensus 93 ~~~a~i~~~~~~~---~~----------------~~~~~--~~~~~~~~~~~~~~l~~l-e~~L~~~~~~fl~Gd~~T~A 150 (213)
T PLN02378 93 AEFASVGSNIFGT---FG----------------TFLKS--KDSNDGSEHALLVELEAL-ENHLKSHDGPFIAGERVSAV 150 (213)
T ss_pred HHHHHHHHHHHHH---HH----------------HHHhc--CChhhHHHHHHHHHHHHH-HHHHhcCCCCCcCCCCCchh
Confidence 7787766533211 11 11111 111223446777889999 99997 5789999999999
Q ss_pred HhhhHhHHHHHHHhh-hhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 166 DIAFGSMLYWMQVIG-DVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 166 Di~l~~~l~~~~~~~-~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
|+++++.+.++.... ...+.+. .+.+|++++|+++|.++|+++++++....
T Consensus 151 Di~l~~~~~~l~~~~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~ 202 (213)
T PLN02378 151 DLSLAPKLYHLQVALGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKY 202 (213)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHH
Confidence 999999988876422 1212222 35899999999999999999999887544
No 14
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.97 E-value=1e-29 Score=213.39 Aligned_cols=187 Identities=22% Similarity=0.321 Sum_probs=150.2
Q ss_pred cCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCC---CCCCCC
Q 023929 9 RLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQ---NPLMPN 85 (275)
Q Consensus 9 ~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~---~~l~p~ 85 (275)
.+.||+|++|+++|.++|++|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||+++|+. +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999999999999999999999889999999999 89999999999999999999999999974 446677
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCC-------------
Q 023929 86 NPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLR------------- 152 (275)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~------------- 152 (275)
++..++.... .+. .+..+.....++..+...+++.+.++.+ |+.|+
T Consensus 95 ~~~~~~~~~~-------l~~-------------~~~~~~~~~~~~~~~~~~~~l~~~l~~L-e~~L~~~~~~~~~~~~~~ 153 (236)
T TIGR00862 95 HPESNTAGLD-------IFA-------------KFSAYIKNSNPEANDNLEKGLLKALKKL-DDYLNSPLPEEIDEDSAE 153 (236)
T ss_pred CHHHHHHHHH-------HHH-------------HHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHhccccccccccccc
Confidence 7666554211 111 1111111212334455566788999999 98886
Q ss_pred -----CCCcccCCCCChhHhhhHhHHHHHHHh-hhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchhH
Q 023929 153 -----ERNFFNGDNIGLVDIAFGSMLYWMQVI-GDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDI 219 (275)
Q Consensus 153 -----~~~fl~G~~~T~ADi~l~~~l~~~~~~-~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~ 219 (275)
+++|+.|+++|+||+.+++.+.++... ..+.+.++ .+++|+|.+|++++.++|+|++++++.+..
T Consensus 154 ~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i 224 (236)
T TIGR00862 154 DEKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEI 224 (236)
T ss_pred cccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHH
Confidence 579999999999999999999999864 34446665 569999999999999999999999987663
No 15
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.97 E-value=1.3e-29 Score=210.45 Aligned_cols=190 Identities=21% Similarity=0.245 Sum_probs=143.2
Q ss_pred Cc-ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHH--------hcCCCCCcccEEEeCCeeeechHHHHH
Q 023929 1 MA-EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLL--------KYNPVHKKIPVLVHGGKPVCESMIILE 71 (275)
Q Consensus 1 Ms-~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~--------~~~P~~g~vP~L~~~g~~l~eS~aIl~ 71 (275)
|+ +++|||++.++++++||++|+++|++|+.+.++. .. +++. +.||+ |+||+|++||.+|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 56 7899999999999999999999999999997743 22 2332 47999 999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcC
Q 023929 72 YIEEMWPQNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGL 151 (275)
Q Consensus 72 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L 151 (275)
||+++++ +.+.+..+++.+++......+.... .. . ...+. +...+...+.+.+.++.+ |+.|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~-~~~~~---~~~~~~~~~~~~~~l~~l-e~~L 139 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQDIHYK-------FN---N-TNLFK---QNETTFLNEELPKWSGYF-ENIL 139 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHHHHHHH-------Hh---h-hHHHH---HHHHHHHHHHHHHHHHHH-HHHH
Confidence 9999997 5566665665555544433222211 00 0 00111 122344567888999999 9999
Q ss_pred CC--CCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCch
Q 023929 152 RE--RNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRD 217 (275)
Q Consensus 152 ~~--~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~ 217 (275)
++ ++|++|+++|+||+.+++.+.++.... + .+.++||+|.+|+++++++|+++++++++.
T Consensus 140 ~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~~---~---~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 140 KKNHCNYFVGDNLTYADLAVFNLYDDIETKY---P---NSLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred HhCCCCeeeCCcccHHHHHHHHHHHHHHHhC---h---hhhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 64 389999999999999999888875311 2 124589999999999999999999987643
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=4.6e-29 Score=213.69 Aligned_cols=183 Identities=24% Similarity=0.413 Sum_probs=144.9
Q ss_pred cCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCCCCCCCCHH
Q 023929 9 RLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQNPLMPNNPY 88 (275)
Q Consensus 9 ~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~l~p~~~~ 88 (275)
...||++++++++|+++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||+++++++.+. ++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~ 146 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPP 146 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHH
Confidence 34599999999999999999999999998889999999999 899999999999999999999999999976664 577
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCC-CCCcccCCCCChhHh
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLR-ERNFFNGDNIGLVDI 167 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~-~~~fl~G~~~T~ADi 167 (275)
+++.+++++.... . ..+....+. +...+++.+.++.+ |+.|+ +++|++|+++|+||+
T Consensus 147 era~i~~~l~~~~---~----------------~~~~~~~~~--~~~~~~l~~~l~~L-E~~L~~~g~yl~Gd~~SlADi 204 (265)
T PLN02817 147 EKASVGSKIFSTF---I----------------GFLKSKDPG--DGTEQALLDELTSF-DDYIKENGPFINGEKISAADL 204 (265)
T ss_pred HHHHHHHHHHHHH---H----------------HHhccCCcc--hHHHHHHHHHHHHH-HHHHhcCCCeeCCCCCCHHHH
Confidence 8888876542211 0 111110111 22345677889999 99996 479999999999999
Q ss_pred hhHhHHHHHHHhh-hhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 168 AFGSMLYWMQVIG-DVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 168 ~l~~~l~~~~~~~-~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
++++.+.++.... ...+.++ .+.+|+|++|++++.++|+++++.+..+.
T Consensus 205 ~l~p~L~~l~~~~~~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~ 254 (265)
T PLN02817 205 SLGPKLYHLEIALGHYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPED 254 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHH
Confidence 9999998886432 2223333 35899999999999999999999886443
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.1e-29 Score=208.35 Aligned_cols=199 Identities=30% Similarity=0.481 Sum_probs=167.0
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCC-
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWP- 78 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~- 78 (275)
.++||+++.+|.++++.++++++|++|+.+.++.. +++++|+++||. |+||+|+++|..++||.||+.||+++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999987765 789999999999 8999999999999999999999999997
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHhcccccc---ccccchhhHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHhCcCCC
Q 023929 79 QNP-LMPNNPYDRALARFWIKFAEDKLVRTT---TLAIPFISVVAILKLFRS-ITGQELENAKKEILEILQTLEEHGLRE 153 (275)
Q Consensus 79 ~~~-l~p~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~e~~L~~ 153 (275)
... ++|.++.+|+.+++|+.+.++.+.... .+..|. .+.. .+....++..+.+.+.++.+ |++|.+
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~-e~~l~~ 151 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPL--------LVGLPLNPTAVKELEAKLRKALDNL-ERFLKT 151 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecc--------eecccCcchhhHHHHHHHHHHHHHH-HHHHcc
Confidence 334 999999999999999999998866422 112220 1211 14566788899999999999 999999
Q ss_pred CCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCC
Q 023929 154 RNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPN 215 (275)
Q Consensus 154 ~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~ 215 (275)
+.|++|+++|+||+.+++.+..+.. ...+. .+.+++|++.+|+++++++|++++....
T Consensus 152 ~~yl~g~~~tlADl~~~~~~~~~~~--~~~~~--~~~~~~p~v~~W~~~~~~~P~~~e~~~~ 209 (226)
T KOG0867|consen 152 QVYLAGDQLTLADLSLASTLSQFQG--KFATE--KDFEKYPKVARWYERIQKRPAYEEANEK 209 (226)
T ss_pred CCcccCCcccHHHHHHhhHHHHHhH--hhhhh--hhhhhChHHHHHHHHHHhCccHHHHHHH
Confidence 9999999999999999999888842 11112 2367999999999999999998886543
No 18
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.8e-29 Score=201.49 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=161.6
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCC
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQN 80 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~ 80 (275)
|+.++|+|++.+++++.+|++++.+|++|+++.++..+..+......|+ ||+|+|+.||..|.||.||+|||+++|+
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 7789999999999999999999999999999999887644555666899 8999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcc----chhhHH-HHHHHHHHHHHHHHhCcCC--C
Q 023929 81 PLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSI----TGQELE-NAKKEILEILQTLEEHGLR--E 153 (275)
Q Consensus 81 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~l~~~l~~l~e~~L~--~ 153 (275)
+.|+++.+++.++++.+...+.... .++..+... .....+ .......+.+..+ ++.|+ +
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~------------~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~-~~~L~~~~ 143 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWE------------IFRQPYTAPEAGKSEEELDKLYLPAKPKYFKIL-EKILKKNK 143 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHH------------HHHHhhhhhhhccchhhhhhhhccchHHHHHHH-HHHHHhCC
Confidence 9999999999999999999988552 222222210 111122 4566777888888 88886 5
Q ss_pred CCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCch
Q 023929 154 RNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRD 217 (275)
Q Consensus 154 ~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~ 217 (275)
++||+||++|+||+.++..+..+... +..+. .+.+|+|+++.+++.++|.++++++.+.
T Consensus 144 sgflvGd~lT~aDl~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 144 SGFLVGDKLTWADLVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred CCeeecCcccHHHHHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 67999999999999999999999652 24444 4488999999999999999999988643
No 19
>PRK10387 glutaredoxin 2; Provisional
Probab=99.95 E-value=2.4e-27 Score=197.37 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=139.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEE-eCCeeeechHHHHHHHHHhCCCCCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLV-HGGKPVCESMIILEYIEEMWPQNPL 82 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~-~~g~~l~eS~aIl~yL~~~~~~~~l 82 (275)
++||+++.||+|+|||++|+++||+|+.+.++..... ...+.||. |+||+|+ +||..|+||.+|++||+++|+++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 5899999999999999999999999999988655322 23678998 8999995 7899999999999999999986545
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccccc-cc----ccchhhHHHHHHHhhc------cch----hhHHHHHHHHHHHHHHHH
Q 023929 83 MPNNPYDRALARFWIKFAEDKLVRTT-TL----AIPFISVVAILKLFRS------ITG----QELENAKKEILEILQTLE 147 (275)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~l~~~l~~l~ 147 (275)
.+ .+++.+++|+.+....+.... .. ..|..........+.. ... ...++..+++++.|+.+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l- 154 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL- 154 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH-
Confidence 32 257788888887765432110 00 0010000011111100 000 11145678899999999
Q ss_pred hCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhh
Q 023929 148 EHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIE 210 (275)
Q Consensus 148 e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~ 210 (275)
|++|++ +|++|+++|+||+.+++.+.++.... + ++ .+|+|.+|++||+++|++.
T Consensus 155 e~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~---~---~~--~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 155 DPLIVK-PNAVNGELSTDDIHLFPILRNLTLVK---G---IE--WPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHhcC-ccccCCCCCHHHHHHHHHHhcceeec---C---CC--CCHHHHHHHHHHHHHhCCC
Confidence 999986 99999999999999999999885321 2 22 4699999999999999864
No 20
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.95 E-value=5e-27 Score=191.59 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=174.4
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQ 79 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~ 79 (275)
.+.||++|.|-.+||||+.++++||+|+...|++. +..+||..+||. |.||||+++..+|.|++.|++|++++|.+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 37899999999999999999999999999999876 678999999998 99999999999999999999999999964
Q ss_pred -CCCCCC-CHHHHHHHHHHHHHHHhc-cccccc-----------cccchhh-------------------------HHHH
Q 023929 80 -NPLMPN-NPYDRALARFWIKFAEDK-LVRTTT-----------LAIPFIS-------------------------VVAI 120 (275)
Q Consensus 80 -~~l~p~-~~~~~a~~~~~~~~~~~~-~~~~~~-----------~~~~~~~-------------------------~~~~ 120 (275)
..|.|. +..+..++.......... +..... -..|..+ ....
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 457775 222323332222222211 111000 0122222 0000
Q ss_pred HH---Hh----hccchhhHHHHHHHHHHHHHHHHhCcCCC----CCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCC
Q 023929 121 LK---LF----RSITGQELENAKKEILEILQTLEEHGLRE----RNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFD 189 (275)
Q Consensus 121 ~~---~~----~~~~~~~~~~~~~~l~~~l~~l~e~~L~~----~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~ 189 (275)
++ .. ...+....++....+...|+.+ |+-|++ ..||+|+++|+||+.+.+.|+++..+.- ......
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~V-EteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~--e~~yw~ 261 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQV-ETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGL--EKKYWE 261 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHhhccccceeeccccchHHHHHHHHHHHHHHHccc--HHHhcc
Confidence 00 00 0012223355577777888888 888876 5799999999999999999999986521 111122
Q ss_pred CCCCccHHHHHHHhcccchhhhcCCCchhHHHHHhhhhcCCCCccccccceeeehhHHHHHHHHHHHH
Q 023929 190 SHKFPSLHTWFENFKQVPEIEENFPNRDDIWFISNIAVNSGWPLIECSSIKFVCVSHFVLVLFMYWCL 257 (275)
Q Consensus 190 ~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (275)
....|||.+|++|+.+|++|++++++.....- .... -...|.-....+++++.+|+++|++|++
T Consensus 262 ~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr---~~~~-~~ktp~~~~~~~l~g~lg~~~y~af~~~ 325 (325)
T KOG4420|consen 262 DGSRPNLESYFERVRRRFSFRKVLGDIFNILR---FRLV-KRKTPSFFGASFLMGSLGGMGYFAFWYL 325 (325)
T ss_pred cCCCccHHHHHHHHHhhhHHHHhhhhHHHHHH---HHHH-HhcCchhhhHHHHHHHhhhhHHHHHhcC
Confidence 44889999999999999999999986544211 0011 1234677788999999999999999974
No 21
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.94 E-value=1.9e-25 Score=185.81 Aligned_cols=190 Identities=18% Similarity=0.237 Sum_probs=134.2
Q ss_pred EEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEE-eCCeeeechHHHHHHHHHhCCCCCCC
Q 023929 5 KLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLV-HGGKPVCESMIILEYIEEMWPQNPLM 83 (275)
Q Consensus 5 ~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~-~~g~~l~eS~aIl~yL~~~~~~~~l~ 83 (275)
+||++..||+|+|||++|+++|++|+.+.+...+. ....+.||. |++|+|+ +||..++||.+|++||+++|+.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 58999999999999999999999999987755432 234789999 8999998 78999999999999999999864443
Q ss_pred CCCHHHHHHHHHHHHHHHhcccccc-ccc----cchhhHHHHHHHhhcc-----c-h----hhHHHHHHHHHHHHHHHHh
Q 023929 84 PNNPYDRALARFWIKFAEDKLVRTT-TLA----IPFISVVAILKLFRSI-----T-G----QELENAKKEILEILQTLEE 148 (275)
Q Consensus 84 p~~~~~~a~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~-----~-~----~~~~~~~~~l~~~l~~l~e 148 (275)
|. +++.+++|+.+....+.... ... .+-+.....+..+.+. . . ...++..+.+++.|+.+ |
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l-e 154 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL-D 154 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH-H
Confidence 32 45667777766555432110 000 0000000011111110 0 0 01145678889999999 9
Q ss_pred CcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCc-cHHHHHHHhcccchhh
Q 023929 149 HGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFP-SLHTWFENFKQVPEIE 210 (275)
Q Consensus 149 ~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P-~l~~w~~~~~~~p~~~ 210 (275)
++|++++|+.| ++|+||+.+++.+.++... + ...+| +|.+|++||++++++.
T Consensus 155 ~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~----~-----~~~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 155 KLIDGPNAVNG-ELSEDDILVFPLLRNLTLV----A-----GINWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHHhCccccCC-CCCHHHHHHHHHhcCeeee----c-----CCCCChHHHHHHHHHHHHhCCC
Confidence 99999999965 6999999999999887421 1 11356 9999999999998763
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.87 E-value=1.3e-21 Score=186.86 Aligned_cols=157 Identities=23% Similarity=0.310 Sum_probs=130.5
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHHHhCCC
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIEEMWPQ 79 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~~~~~~ 79 (275)
|+ ++||+.+.++ +.++.++|++.|++|+.+. .+|. |++|+|++ ||.+|+||.||++||++.+++
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCC
Confidence 77 8999998774 7789999999999999865 2577 89999995 889999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccC
Q 023929 80 NPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNG 159 (275)
Q Consensus 80 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G 159 (275)
..|+|.++.+++++++|+.+...... . ..+.+.++.+ |.+|++++||+|
T Consensus 66 ~~L~p~d~~erAqV~qWL~~~~~~~~-----------------------~-------~~l~~~L~~L-E~~L~~rtYLvG 114 (722)
T PLN02907 66 PGFYGQDAFESSQVDEWLDYAPTFSS-----------------------G-------SEFENACEYV-DGYLASRTFLVG 114 (722)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhccc-----------------------H-------HHHHHHHHHH-HHHhccCCeecC
Confidence 88999999999999999998754211 0 1245678899 999999999999
Q ss_pred CCCChhHhhhHhHHHHHH-HhhhhcccccCCCCCCccHHHHHHHhcccch
Q 023929 160 DNIGLVDIAFGSMLYWMQ-VIGDVVGVKLFDSHKFPSLHTWFENFKQVPE 208 (275)
Q Consensus 160 ~~~T~ADi~l~~~l~~~~-~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~ 208 (275)
+++|+||+++++.+.... ... +... .+.+|+|.+|+++|.++|+
T Consensus 115 d~lTLADIaL~~~L~~~~~~~~---~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 115 YSLTIADIAIWSGLAGSGQRWE---SLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred CCCCHHHHHHHHHHHhhhhhhh---cccc--cccCHHHHHHHHHHHhCCC
Confidence 999999999998876551 111 1112 4589999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.9e-21 Score=152.51 Aligned_cols=187 Identities=26% Similarity=0.396 Sum_probs=151.0
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCCCCCCCCHHH
Q 023929 10 LLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQNPLMPNNPYD 89 (275)
Q Consensus 10 ~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~l~p~~~~~ 89 (275)
..||+||++-+.|.++|++|+++-+++..+++||++..|. |++|+|..|+..++||..|-+.|+++++.+.+---++.|
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 3699999999999999999999999999999999999998 899999999999999999999999999876543222223
Q ss_pred HHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCC---CCcccCCCCChhH
Q 023929 90 RALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRE---RNFFNGDNIGLVD 166 (275)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~---~~fl~G~~~T~AD 166 (275)
.+-+ ..+.|. .+..+..+..++..+...+.+.+.|..+ |++|+. ++||.||++|.||
T Consensus 98 ~asa------g~diF~-------------kF~~fi~ksk~~~n~~~e~~Ll~~L~~L-d~yL~sp~~~~Fl~Gd~lt~aD 157 (221)
T KOG1422|consen 98 SASA------GSDIFA-------------KFSAFIKKSKDAANDGLEKALLKELEKL-DDYLKSPSRRKFLDGDKLTLAD 157 (221)
T ss_pred HHhh------HHHHHH-------------HHHHHHhCchhhccchHHHHHHHHHHHH-HHHhcCccCCccccCCeeeeeh
Confidence 2221 222232 2222322323445566678888899999 999974 8999999999999
Q ss_pred hhhHhHHHHHHH-hhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchhH
Q 023929 167 IAFGSMLYWMQV-IGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDI 219 (275)
Q Consensus 167 i~l~~~l~~~~~-~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~ 219 (275)
+.+++-|+.++. ...+.+.++ .++++.+.+|++.+.++.+|..+.+..+..
T Consensus 158 csLlPKL~~i~va~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei 209 (221)
T KOG1422|consen 158 CSLLPKLHHIKVAAKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEI 209 (221)
T ss_pred hhhchhHHHHHHHHHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHH
Confidence 999999999995 556667777 559999999999999999999998876554
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.79 E-value=5.9e-19 Score=122.64 Aligned_cols=74 Identities=43% Similarity=0.660 Sum_probs=71.0
Q ss_pred EEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCC
Q 023929 6 LHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQN 80 (275)
Q Consensus 6 Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~ 80 (275)
||++++||+|+|+|++|+++||+|+.+.++..++.+++.+.||. |+||+|++||.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999988889999999998 899999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.76 E-value=4.7e-18 Score=117.30 Aligned_cols=73 Identities=32% Similarity=0.420 Sum_probs=69.3
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
++||+.+.||+|++++++|+++|++|+.+.++..++.+++++.||. |++|+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988888999999999 899999999999999999999999875
No 26
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.74 E-value=1.3e-17 Score=115.56 Aligned_cols=74 Identities=72% Similarity=1.171 Sum_probs=68.4
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
++||+++.||+|+++|++|+++|++|+.+.++...+.+++.+.||..|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 58999999999999999999999999999998887788999999932799999999999999999999999864
No 27
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.74 E-value=8.7e-18 Score=116.00 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=65.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++||+++.||+|+++|++|+++|++|+.+.++.. .+.+++.++||. |+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998774 467899999999 899999999999999999999985
No 28
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=1.3e-17 Score=116.39 Aligned_cols=73 Identities=23% Similarity=0.204 Sum_probs=66.4
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEe--CCeeeechHHHHHHHHHhC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVH--GGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~--~g~~l~eS~aIl~yL~~~~ 77 (275)
++||+++.||+|+|++++|+++||+|+.+.++... ..+++++.||. |++|+|++ +|.+++||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 89999999999999999999999999999987553 46789999999 89999997 4689999999999999875
No 29
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.73 E-value=2.1e-17 Score=117.76 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCC
Q 023929 10 LLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQN 80 (275)
Q Consensus 10 ~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~ 80 (275)
..||||+++|++|+++||+|+.+.+++.+++++|++.||. |++|+|+++|.+++||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4799999999999999999999999999999999999999 999999999999999999999999998754
No 30
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.72 E-value=2.4e-17 Score=114.12 Aligned_cols=71 Identities=30% Similarity=0.332 Sum_probs=65.9
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
++||+++.||+|++++++|+++|++|+.+.+++. .+.+++.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 356899999999 8999999999999999999999974
No 31
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.71 E-value=2.1e-17 Score=114.19 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=67.1
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
+++||+++.|++++++|++|+++|++|+.+.++..++.+++.+.||. |++|+|+++|.+++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 37999999999999999999999999999999876556688999999 89999999999999999999999863
No 32
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.71 E-value=6e-17 Score=112.71 Aligned_cols=72 Identities=42% Similarity=0.563 Sum_probs=66.8
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
++||+++.||+|+++|++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988865 456889999999 89999999999999999999999863
No 33
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.71 E-value=5.1e-17 Score=111.59 Aligned_cols=69 Identities=30% Similarity=0.406 Sum_probs=65.0
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYI 73 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL 73 (275)
++||++++||+|++++++|+++|++|+.+.++..++.+++.+.||. |+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 4799999999999999999999999999999988778899999999 89999998 499999999999996
No 34
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.71 E-value=7.2e-17 Score=112.36 Aligned_cols=73 Identities=33% Similarity=0.452 Sum_probs=67.0
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
++||+++.|+++++++++|+++|++|+.+.++.. .+.+++.+.||. |++|+|+++|.+++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 4799999999999999999999999999998865 345789999999 899999999999999999999999875
No 35
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.69 E-value=1.2e-16 Score=112.62 Aligned_cols=73 Identities=34% Similarity=0.432 Sum_probs=67.3
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeC---CeeeechHHHHHHHHHhC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHG---GKPVCESMIILEYIEEMW 77 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~---g~~l~eS~aIl~yL~~~~ 77 (275)
++||+++. |+|++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++ |..|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999986 9999999999999999999998864 567899999999 899999986 899999999999999988
Q ss_pred C
Q 023929 78 P 78 (275)
Q Consensus 78 ~ 78 (275)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 36
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.68 E-value=1.3e-16 Score=109.97 Aligned_cols=70 Identities=37% Similarity=0.548 Sum_probs=64.9
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++||+++.||+|++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 467899999999 899999999999999999999984
No 37
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.68 E-value=8.8e-16 Score=127.34 Aligned_cols=192 Identities=19% Similarity=0.402 Sum_probs=127.7
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH-------
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE------- 75 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~------- 75 (275)
+++||.+..||+|.|||.+|...||+|..+.+++..+.+ ++-+.. .+||+|..+|+.+.||.+|+.-|+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--cccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 689999999999999999999999999999999874332 222343 8999999988889999999987733
Q ss_pred -------hCCCCCC------------------CCC-----CHHHHHHHHHHHHHHHhccccc-cc--c------------
Q 023929 76 -------MWPQNPL------------------MPN-----NPYDRALARFWIKFAEDKLVRT-TT--L------------ 110 (275)
Q Consensus 76 -------~~~~~~l------------------~p~-----~~~~~a~~~~~~~~~~~~~~~~-~~--~------------ 110 (275)
.||.-.. +.+ +.+.+..-+.|-+|+++.+-.. .+ +
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 3331000 011 1122335567888887763211 00 0
Q ss_pred ---------ccchhhH-----------HHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcC-CCCCcccCCCCChhHhhh
Q 023929 111 ---------AIPFISV-----------VAILKLFRSITGQELENAKKEILEILQTLEEHGL-RERNFFNGDNIGLVDIAF 169 (275)
Q Consensus 111 ---------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L-~~~~fl~G~~~T~ADi~l 169 (275)
.+|.+.. ..+.+.... +....+.++.+.+.++.+ -+.| .+++||.|++|++||+.+
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKk--khni~D~Re~lydA~d~W-vaalgknr~flGG~kPnLaDLsv 323 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKK--KHNISDEREHLYDAADQW-VAALGKNRPFLGGKKPNLADLSV 323 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHh--hcccchHHHHHHHHHHHH-HHHhCCCCCccCCCCCchhhhhh
Confidence 1222111 011111111 222233566777777777 5555 688999999999999999
Q ss_pred HhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcc
Q 023929 170 GSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
++.+..+..+..+. +.+ ...++..|+-+|++
T Consensus 324 fGvl~sm~gc~afk--d~~---q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 324 FGVLRSMEGCQAFK--DCL---QNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhhHhhhhhHHH--HHH---hcchHHHHHHHHHH
Confidence 99999998765542 222 45789999999987
No 38
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.68 E-value=4.6e-16 Score=128.48 Aligned_cols=190 Identities=21% Similarity=0.268 Sum_probs=128.6
Q ss_pred eEEEecC-------CChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 4 VKLHGRL-------LSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 4 ~~Ly~~~-------~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
+-||.++ .||||.|+..+|+..+|||+.+...+. ..++. |++|.++.||+.+.||.-|+..|.++
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 4566554 789999999999999999999887653 23455 89999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhccc---------------------cccccccchhhHHHHHHHhhc---------
Q 023929 77 WPQNPLMPNNPYDRALARFWIKFAEDKLV---------------------RTTTLAIPFISVVAILKLFRS--------- 126 (275)
Q Consensus 77 ~~~~~l~p~~~~~~a~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~--------- 126 (275)
++-+..+ ++.++|+.+.....++..+. .......+.+-...++..+.+
T Consensus 118 f~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8743322 33445544444333332100 001101111111111222221
Q ss_pred cchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcc
Q 023929 127 ITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 127 ~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
.+.=..++..+-+++-++.+ ++.|++.+||.|+++|-+|+.+++.|..+-.-....-.+++ .+++|+|.+|++|+++
T Consensus 196 IG~f~~~Ei~ell~rDlr~i-~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~l-e~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAI-SDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLL-EGDFPNLLEYCERIRK 272 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHH-HHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHH-hhhchHHHHHHHHHHH
Confidence 11112345777888999999 99999999999999999999999999887541011112223 6799999999999987
No 39
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.67 E-value=1.2e-16 Score=110.07 Aligned_cols=71 Identities=27% Similarity=0.201 Sum_probs=64.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
++||+++.|++|+++|++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988753 23458899999 8999999999999999999999974
No 40
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.67 E-value=2.5e-16 Score=109.37 Aligned_cols=70 Identities=27% Similarity=0.291 Sum_probs=65.5
Q ss_pred EEEecCCChHHHHHHHHHHHcCCCceEEEcCCC--CCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHHH
Q 023929 5 KLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS--NKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIEE 75 (275)
Q Consensus 5 ~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~--~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~~ 75 (275)
+||+++.||+++++|++|+++|++|+.+.++.. ++.+++.+.||. |++|+|++ ||.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 567899999999 89999997 58999999999999986
No 41
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.67 E-value=2.8e-16 Score=108.52 Aligned_cols=70 Identities=33% Similarity=0.502 Sum_probs=64.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++||+++.||++++++++|+++|++|+.+.++.. .+.+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 4799999999999999999999999999988753 456889999999 899999999999999999999984
No 42
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.66 E-value=4.4e-16 Score=108.22 Aligned_cols=73 Identities=33% Similarity=0.517 Sum_probs=66.5
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~ 78 (275)
++||+++. +++++++++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47999886 6899999999999999999998864 567899999999 8999999999999999999999999875
No 43
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=2.8e-16 Score=108.49 Aligned_cols=70 Identities=34% Similarity=0.449 Sum_probs=65.4
Q ss_pred eEEEecCCChHHHHHHHHHHH--cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKL--KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~--~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~ 74 (275)
++||+++.||+|+++|++|++ +|++|+.+.++...+.+++++.||. |++|+|++ ||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999887778899999999 89999985 8899999999999985
No 44
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.66 E-value=3.5e-16 Score=107.41 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=61.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeC-CeeeechHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHG-GKPVCESMIILEYIEE 75 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~-g~~l~eS~aIl~yL~~ 75 (275)
++||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|. |++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887543 2345678998 899999985 8999999999999974
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.66 E-value=4.5e-16 Score=111.72 Aligned_cols=71 Identities=35% Similarity=0.568 Sum_probs=66.5
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeC-CeeeechHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHG-GKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~-g~~l~eS~aIl~yL~ 74 (275)
.++||+++.||+|++++++|+++|++|+.+.++...+.+++.+.||. |++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 48999999999999999999999999999999887777889999999 899999986 899999999999985
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.66 E-value=3.3e-16 Score=108.15 Aligned_cols=70 Identities=34% Similarity=0.444 Sum_probs=63.8
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~ 74 (275)
++||+++.||+|+++|++|+++|++|+.+.++.. .+.+++.+.||. |++|+|++ ||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 356789999999 89999995 7889999999999985
No 47
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.65 E-value=7.5e-16 Score=107.45 Aligned_cols=73 Identities=33% Similarity=0.455 Sum_probs=65.7
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeC-CeeeechHHHHHHHHHhCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHG-GKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~-g~~l~eS~aIl~yL~~~~~ 78 (275)
++||+++.+ .++++|++|+++|++|+.+.++.. ++.+++++.||. |++|+|+++ |..++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 479999876 589999999999999999988875 357899999999 899999986 8999999999999999875
No 48
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.64 E-value=1e-15 Score=107.30 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=62.7
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcC-----CCCCcccEEEeCCeeeechHHHHHHHHHhC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYN-----PVHKKIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~-----P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
+++||+++.++.+++++++|++.|++|+.+.++.. +++.+.+ |+ |++|+|++||.+++||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 47899999999999999999999999999988753 3333333 57 899999999999999999999999988
Q ss_pred C
Q 023929 78 P 78 (275)
Q Consensus 78 ~ 78 (275)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 7
No 49
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.64 E-value=8.9e-16 Score=107.07 Aligned_cols=72 Identities=26% Similarity=0.525 Sum_probs=63.0
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeC----CeeeechHHHHHHHHHhC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHG----GKPVCESMIILEYIEEMW 77 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~----g~~l~eS~aIl~yL~~~~ 77 (275)
+++||+++.||+|+++|++|.++||+|+.+.+++.... + .+.+|. +++|+|+++ |.++.||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 58999999999999999999999999999998764332 3 367998 899999965 789999999999999864
No 50
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.64 E-value=7.6e-16 Score=106.14 Aligned_cols=70 Identities=34% Similarity=0.475 Sum_probs=64.9
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++||+++.|++++++|++|+++|++|+.+.++.. .+.+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999864 456899999999 899999999999999999999985
No 51
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.63 E-value=9.6e-16 Score=108.22 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=62.5
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC----CchHHHh-----cCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN----KSDLLLK-----YNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~----~~~~~~~-----~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
.+|||+..++.|+++|++|+++|++|+.+.+++.. +.+++.+ ..|+ |+||+|++||.+++||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 47999999999999999999999999999998753 1244432 2299 899999999999999999999999
Q ss_pred HhC
Q 023929 75 EMW 77 (275)
Q Consensus 75 ~~~ 77 (275)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 864
No 52
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.63 E-value=1.7e-15 Score=105.11 Aligned_cols=67 Identities=31% Similarity=0.526 Sum_probs=61.4
Q ss_pred eEEEecC-------CChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 4 VKLHGRL-------LSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 4 ~~Ly~~~-------~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
++||+++ .||+|++++++|+++|++|+.+.++.. +.+|. |++|+|+++|.++.||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 7999988 689999999999999999999888642 68998 89999999999999999999999998
Q ss_pred CC
Q 023929 77 WP 78 (275)
Q Consensus 77 ~~ 78 (275)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 53
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.61 E-value=6.6e-15 Score=112.37 Aligned_cols=118 Identities=47% Similarity=0.827 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhH
Q 023929 87 PYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVD 166 (275)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~AD 166 (275)
|.+|+++++|+.+.+..+.. .....+.. .+...+...+++.+.++.+ |+.|++++|++|+++|+||
T Consensus 1 p~~ra~~~~w~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~AD 66 (126)
T cd03185 1 PYERAVARFWAAFIDDKLFP------------AGRKVLAA-KGEEREKAKEEALEALKVL-EEELGGKPFFGGDTIGYVD 66 (126)
T ss_pred ChhHHHHHHHHHHHHHHHHH------------HHHHHHcc-chHHHHHHHHHHHHHHHHH-HHHhcCCCCCCCCCcchHH
Confidence 35799999999999877553 11122222 2445566788999999999 9999989999999999999
Q ss_pred hhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 167 IAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 167 i~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
+.+++.+.++.......+.+.++.+.+|++.+|+++|+++|+++++++..+.
T Consensus 67 i~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 118 (126)
T cd03185 67 IALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDK 118 (126)
T ss_pred HHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHH
Confidence 9999999988654333233322346899999999999999999999987544
No 54
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.59 E-value=5.2e-15 Score=102.91 Aligned_cols=71 Identities=35% Similarity=0.381 Sum_probs=58.8
Q ss_pred EEEecCCChHHHHHHHHHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeC-CeeeechHHHHHHHHH
Q 023929 5 KLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHG-GKPVCESMIILEYIEE 75 (275)
Q Consensus 5 ~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~-g~~l~eS~aIl~yL~~ 75 (275)
+|++++..++++++|++|+++|++|+.+.++.. ++.+++.+.||..|++|+|+++ |.+++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 344444555999999999999999999999874 4459999999963699999998 9999999999999985
No 55
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.59 E-value=3.9e-15 Score=101.87 Aligned_cols=65 Identities=48% Similarity=0.719 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHcCCCceEEEcCC----CCCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHHHh
Q 023929 11 LSPFVCRVIWALKLKGVPYEFVAEDL----SNKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIEEM 76 (275)
Q Consensus 11 ~sp~~~~vrl~L~~~gi~y~~~~v~~----~~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~~~ 76 (275)
.|||++|++++|+++|++|+...+.. .++.+++.+.||. |+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 2556899999999 89999998 899999999999999874
No 56
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.9e-15 Score=122.84 Aligned_cols=204 Identities=22% Similarity=0.252 Sum_probs=149.7
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCC--ceEEEcCCC--CC----------------------chHHHhcCCCC---Ccc
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVP--YEFVAEDLS--NK----------------------SDLLLKYNPVH---KKI 53 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~--y~~~~v~~~--~~----------------------~~~~~~~~P~~---g~v 53 (275)
.+.||..-.||++++..++=+.+|++ .....+.+. .+ .+-+.+..|-+ -+|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 47899999999999999999999987 122222211 10 01122333410 269
Q ss_pred cEEEeC--Ce-eeechHHHHHHHHHhCCC-----CCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhh
Q 023929 54 PVLVHG--GK-PVCESMIILEYIEEMWPQ-----NPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFR 125 (275)
Q Consensus 54 P~L~~~--g~-~l~eS~aIl~yL~~~~~~-----~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (275)
|+|.+. .. +=.||..|++.+...|.+ ..|+|.+ .|.+++.+.+++-+..++. .++..|.
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNG-----------VYk~GFA 197 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNG-----------VYKAGFA 197 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCc-----------eeeeccc
Confidence 999983 23 336999999999887742 3578876 7899999999998886541 2233444
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHH-hhhhcccccCCCCCCccHHHHHHHhc
Q 023929 126 SITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQV-IGDVVGVKLFDSHKFPSLHTWFENFK 204 (275)
Q Consensus 126 ~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~-~~~~~~~~~~~~~~~P~l~~w~~~~~ 204 (275)
. .++..+++.+++-+.|+.+ |..|+++.||+|+++|.||+-+++.|-+++. .-.++..++-....||+|..|...+.
T Consensus 198 ~-tq~aYeea~~~lF~~Ld~l-E~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LY 275 (324)
T COG0435 198 T-TQEAYEEAVKKLFEALDKL-EQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLY 275 (324)
T ss_pred c-hHHHHHHHHHHHHHHHHHH-HHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHh
Confidence 3 5778888999999999999 9999999999999999999999999999874 22233333333557999999999999
Q ss_pred ccchhhhcCCCchhHHH
Q 023929 205 QVPEIEENFPNRDDIWF 221 (275)
Q Consensus 205 ~~p~~~~~l~~~~~~~~ 221 (275)
+.|+++++..=.+...|
T Consensus 276 q~pg~~~T~df~hIK~h 292 (324)
T COG0435 276 QLPGFAETVDFDHIKLH 292 (324)
T ss_pred cCcccccccchhHhhhh
Confidence 99999999775555333
No 57
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.58 E-value=6.2e-15 Score=104.61 Aligned_cols=67 Identities=33% Similarity=0.544 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEcCCCCC---chHHHhcCCCCCcccEEEeC-CeeeechHHHHHHHHHhCC
Q 023929 10 LLSPFVCRVIWALKLKGVPYEFVAEDLSNK---SDLLLKYNPVHKKIPVLVHG-GKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 10 ~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~---~~~~~~~~P~~g~vP~L~~~-g~~l~eS~aIl~yL~~~~~ 78 (275)
++||+|+|+|++|.++|++|+.+.++.... .+++ +.||. |++|+|+++ |..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 689999999999999999999998876532 2344 78999 899999998 8999999999999999875
No 58
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-14 Score=110.73 Aligned_cols=194 Identities=21% Similarity=0.267 Sum_probs=129.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEE-eCCeeeechHHHHHHHHHhCCCCCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLV-HGGKPVCESMIILEYIEEMWPQNPL 82 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~-~~g~~l~eS~aIl~yL~~~~~~~~l 82 (275)
|+||-+..||||-|+|++.-.+|||++.+.....+..-.. .+-.. .+||+|+ +||..+.||..|++|+++..+++-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~-rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI-RMIGQ-KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh-hhhcc-cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 5799999999999999999999999999887655322222 22233 6899998 5899999999999999998876544
Q ss_pred CCC-CHHHHHHHHHHHHHHHhc-cccccccccchhhHHHHHHHhhccch----------hhHHHHHHHHHHHHHHHHhCc
Q 023929 83 MPN-NPYDRALARFWIKFAEDK-LVRTTTLAIPFISVVAILKLFRSITG----------QELENAKKEILEILQTLEEHG 150 (275)
Q Consensus 83 ~p~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~l~~l~e~~ 150 (275)
.+. .|+-.+..+....+.+-. +++-.....|-+.....+++|....+ .......+++...++.+ +++
T Consensus 79 t~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l-~~L 157 (215)
T COG2999 79 TGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL-DKL 157 (215)
T ss_pred ccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH-HHH
Confidence 443 343333333333333322 23222333344444444555543111 12245578888888999 888
Q ss_pred CCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCc-cHHHHHHHhcccchhh
Q 023929 151 LRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFP-SLHTWFENFKQVPEIE 210 (275)
Q Consensus 151 L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P-~l~~w~~~~~~~p~~~ 210 (275)
+.+..=+- ..+|+-|+.+++.|..+-. ..|. ++| ++..|.++|.+...+.
T Consensus 158 i~~~s~~n-~~l~~ddi~vFplLRnlt~---v~gi------~wps~v~dy~~~msektqV~ 208 (215)
T COG2999 158 IVGPSAVN-GELSEDDILVFPLLRNLTL---VAGI------QWPSRVADYRDNMSEKTQVN 208 (215)
T ss_pred hcCcchhc-cccchhhhhhhHHhcccee---cccC------CCcHHHHHHHHHHHHhhCcc
Confidence 86554333 3599999999999988742 2243 344 7999999999866554
No 59
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.56 E-value=2.4e-14 Score=106.19 Aligned_cols=106 Identities=22% Similarity=0.383 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhH
Q 023929 87 PYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVD 166 (275)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~AD 166 (275)
|.+|+++++|+.+++..+.. .......+ .++..+...+.+.+.++.+ |+.|++++|++|+++|+||
T Consensus 1 p~~ra~~r~w~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aD 66 (107)
T cd03186 1 PVARARSRLLMHRIEQDWYP------------LVDTIEKG-RKKEAEKARKELRESLLAL-APVFAHKPYFMSEEFSLVD 66 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHH------------HHHHHHhC-cHHHHHHHHHHHHHHHHHH-HHHHcCCCcccCCCCcHHH
Confidence 35799999999999887552 21222222 2455667888999999999 9999999999999999999
Q ss_pred hhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhc
Q 023929 167 IAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEEN 212 (275)
Q Consensus 167 i~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~ 212 (275)
+++++.+.++... +.++ ...+|++++|+++|.++|+++++
T Consensus 67 i~~~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 67 CALAPLLWRLPAL----GIEL--PKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHHHHHc----CCCC--cccchHHHHHHHHHHCCHHHHHh
Confidence 9999988665422 4443 24899999999999999999875
No 60
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.55 E-value=4.5e-14 Score=110.26 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHh
Q 023929 88 YDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDI 167 (275)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi 167 (275)
..|+.+++|++|..+.+.. .........+++..+...+++.+.|+.+ |+.|++++|++|+++|+||+
T Consensus 3 ~~~a~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~l~~L-E~~L~~~~yl~Gd~~TlADi 69 (142)
T cd03190 3 ELRSEIDELNEWIYDNINN------------GVYKAGFATTQEAYDEAVDELFEALDRL-EELLSDRRYLLGDRLTEADI 69 (142)
T ss_pred hHHHHHHHHHHHHHHHHhh------------HHHHHhhccCHHHHHHHHHHHHHHHHHH-HHHHccCCeeeCCCccHHHH
Confidence 4688999999999998653 2222222225666778889999999999 99999899999999999999
Q ss_pred hhHhHHHHHHHhh-hhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchhHHHHH
Q 023929 168 AFGSMLYWMQVIG-DVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDIWFIS 223 (275)
Q Consensus 168 ~l~~~l~~~~~~~-~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~~~~~ 223 (275)
++++.+.++.... ..........+.+|+|.+|+++|.++|+++++....+.+..+.
T Consensus 70 ~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~ 126 (142)
T cd03190 70 RLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYY 126 (142)
T ss_pred HHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHH
Confidence 9999887764321 1111111113489999999999999999999998755554433
No 61
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.55 E-value=2.8e-14 Score=98.46 Aligned_cols=66 Identities=33% Similarity=0.569 Sum_probs=60.5
Q ss_pred ecCCChHHHHHHHHHHHcCCCceEEEcCCC--CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 8 GRLLSPFVCRVIWALKLKGVPYEFVAEDLS--NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 8 ~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~--~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
+...||+++++|++|+++|++|+.+.++.. ++.+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 567899999999999999999999998875 356899999999 899999999999999999999984
No 62
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.55 E-value=2.2e-14 Score=97.15 Aligned_cols=70 Identities=44% Similarity=0.603 Sum_probs=63.3
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCch-HHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSD-LLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~-~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 48999999999999999999999999999998764333 58889998 899999999999999999999984
No 63
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.54 E-value=3.2e-14 Score=107.06 Aligned_cols=113 Identities=18% Similarity=0.307 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCCh
Q 023929 85 NNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGL 164 (275)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ 164 (275)
.||..++++++|+.+....+.+ .+....+...+ ..+..+...+++.+.++.+ |+.|++++|++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~l-e~~L~~~~yl~Gd~~tl 70 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKH-------HLDRYKYADRY---PEESEEEYRQQAEAFLKDL-EARLQQHSYLLGDKPSL 70 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHH-------HHHhccchhhc---CcccHHHHHHHHHHHHHHH-HHHHccCCccCCCCccH
Confidence 3789999999999999988653 11111111111 2224677889999999999 99999999999999999
Q ss_pred hHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhc
Q 023929 165 VDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEEN 212 (275)
Q Consensus 165 ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~ 212 (275)
||+++++.+.++.... ...++.+++|+|.+|++++.++|+++++
T Consensus 71 ADi~l~~~l~~~~~~~----~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 71 ADWAIFPFVRQFAHVD----PKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHHHHHHHHhh----hcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 9999998877664321 1112246899999999999999999975
No 64
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.51 E-value=1.1e-13 Score=105.48 Aligned_cols=116 Identities=22% Similarity=0.409 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCC--CCcccCCCCChhH
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRE--RNFFNGDNIGLVD 166 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~--~~fl~G~~~T~AD 166 (275)
+||+.+.|+++++..+.. +...+.. ++..+...+.+.+.++.+ |+.|++ ++|++|+++|+||
T Consensus 2 ~ra~~r~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~~l~~l-e~~L~~~~~~yl~G~~~t~aD 65 (124)
T cd03184 2 EKAQQKLLLERFSKVVSA-------------FYKLLGA--PSDREEKKAELRSALENL-EEELTKRGTPFFGGDSPGMVD 65 (124)
T ss_pred hHHHHHHHHHHHhhhhHH-------------HHHHHhc--cccchhhHHHHHHHHHHH-HHHHHhcCCCCcCCCCccHHH
Confidence 589999999999755542 2222222 455677888999999999 999975 8999999999999
Q ss_pred hhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchhHHH
Q 023929 167 IAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDIWF 221 (275)
Q Consensus 167 i~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~~~ 221 (275)
+++++.+.++.......+. ....+.+|+|++|+++|.++|++++++++.+.+..
T Consensus 66 i~~~~~~~~~~~~~~~~~~-~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~ 119 (124)
T cd03184 66 YMIWPWFERLEALKLLLGY-EFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAE 119 (124)
T ss_pred HHhhHHHHHHHHHHhhccc-cCCcccChHHHHHHHHhccChHHHHHhCCHHHHHH
Confidence 9999999887654322121 12256899999999999999999999998765543
No 65
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.49 E-value=1.1e-13 Score=103.46 Aligned_cols=109 Identities=19% Similarity=0.390 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhcccccc-ccccchhhHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCCh
Q 023929 89 DRALARFWIKFAEDKLVRTT-TLAIPFISVVAILKLFRS---ITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGL 164 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ 164 (275)
+|+++++|+.|.++.+.+.. ....+ ..... ..+...+...+++.+.++.+ |+.|++++|++|+++|+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~t~ 72 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYP--------ARWATDEAAQEEVKAAARERLAARLAYL-DAQLAGGPYLLGDRFSV 72 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccc--------cccccChhhHHHHHHHHHHHHHHHHHHH-HHHhcCCCeeeCCCcch
Confidence 58999999999988755311 11111 00000 01334566788899999999 99999899999999999
Q ss_pred hHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcC
Q 023929 165 VDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENF 213 (275)
Q Consensus 165 ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l 213 (275)
||+.+++.+.++... +. +.+++|++.+|+++|.++|++++++
T Consensus 73 aDi~~~~~~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 73 ADAYLFVVLRWAPGV----GL---DLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHHHHHHhhc----CC---ChhhChHHHHHHHHHHhCHHhHhhC
Confidence 999999998877532 22 2348999999999999999999864
No 66
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.49 E-value=1.4e-13 Score=94.68 Aligned_cols=64 Identities=31% Similarity=0.465 Sum_probs=57.7
Q ss_pred EEEecC-------CChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 5 KLHGRL-------LSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 5 ~Ly~~~-------~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
+||.++ .||+|++++++|+++|++|+.+.++... .+|. |++|+|+++|..+.||.+|++||+++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 577666 8999999999999999999999987532 7898 89999999999999999999999874
No 67
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.48 E-value=3.3e-13 Score=101.91 Aligned_cols=109 Identities=23% Similarity=0.340 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc---------cchhhHHHHHHHHHHHHHHHHhCcCCCC
Q 023929 84 PNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS---------ITGQELENAKKEILEILQTLEEHGLRER 154 (275)
Q Consensus 84 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~l~e~~L~~~ 154 (275)
|.++.+|+++++|+.+....+.. .+........+.. ..+...+...+++.+.++.+ |+.|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~ 73 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMP-------PLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFL-EDRLAKK 73 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhH-------HHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHH-HHHHccC
Confidence 56889999999999999887552 1111111111111 01333445677899999999 9999999
Q ss_pred CcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccc
Q 023929 155 NFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVP 207 (275)
Q Consensus 155 ~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p 207 (275)
+|++|+++|+||+++++.+.++... +. ..+.+|+|.+|+++++++|
T Consensus 74 ~~l~Gd~~t~ADi~l~~~~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 74 GYFVGDKLTAADIMMSFPLEAALAR----GP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc----Cc---ccccCchHHHHHHHHhcCC
Confidence 9999999999999999988887532 22 2458999999999999987
No 68
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.47 E-value=3.4e-13 Score=102.19 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc-c--chhhHHHHHHHHHHHHHHHHhCcCC--CCCcccCCC
Q 023929 87 PYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS-I--TGQELENAKKEILEILQTLEEHGLR--ERNFFNGDN 161 (275)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~~l~~l~e~~L~--~~~fl~G~~ 161 (275)
|.+|+++++|+.+..+.+... ............ . ..+..+...+.+.+.++.+ |+.|+ +++|++|++
T Consensus 1 p~~ra~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~G~~ 72 (121)
T cd03191 1 PKKRARVRALALIIACDIHPL-------NNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAAL-EKLLAQTAGKFCFGDE 72 (121)
T ss_pred ChhHHHHHHHHHHHHccCCcc-------ccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCeecCCc
Confidence 457999999999999876531 101111111111 0 1222233456789999999 99997 458999999
Q ss_pred CChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCC
Q 023929 162 IGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPN 215 (275)
Q Consensus 162 ~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~ 215 (275)
+|+||+++++.+.++... +.+ .+.+|+|++|++++.++|+++++++.
T Consensus 73 ~t~ADi~~~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 73 PTLADICLVPQVYNARRF----GVD---LSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred CCHHHHHHHHHHHHHHHh----CCC---cccCcHHHHHHHHHHhChhHHHhCcC
Confidence 999999999998877532 322 35899999999999999999998775
No 69
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.47 E-value=1.7e-13 Score=102.41 Aligned_cols=111 Identities=18% Similarity=0.366 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHh
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS-ITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDI 167 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi 167 (275)
+|+++++|+.|.+..+.. + +........+.+ ..+...+...+++.+.++.+ |+.|++++|++|+++|+||+
T Consensus 1 ~ra~~~~wl~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi 72 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGP------M-FGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVL-DKRLAGRDYLAGDEYSIADI 72 (113)
T ss_pred ChHHHHHHHHHHHccCCC------c-chHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH-HHHHccCCcccCCCCCeeee
Confidence 478999999999888663 1 111111111111 13455667788999999999 99999899999999999999
Q ss_pred hhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcC
Q 023929 168 AFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENF 213 (275)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l 213 (275)
.+++.+.+.... +... .+.+|++.+|++++.++|++++++
T Consensus 73 ~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 73 AIFPWVRRLEWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred eHHHHHHHHHhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 999999888543 2222 458999999999999999999875
No 70
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.47 E-value=2.6e-13 Score=103.02 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhh
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIA 168 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~ 168 (275)
++++++++++.+.+.... ..+..+....+...+...+.+.+.++.+ |+.|++++|++|+++|+||+.
T Consensus 2 e~~~id~~~~~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~T~aDi~ 68 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG------------LARICYSPDFEKLKPDYLAKLPDKLKLF-SDFLGDRPWFAGDKITYVDFL 68 (121)
T ss_pred chHHHHHHHHHHHHHHHH------------HHHhhcCcchHHHHHHHHHHHHHHHHHH-HHHhCCCCCcCCCCccHHHHH
Confidence 578899998888877442 1111122112334455678888999999 999998999999999999999
Q ss_pred hHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 169 FGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
+++.+.++... +... .+.+|+|.+|++++.++|++++++++.+.
T Consensus 69 l~~~~~~~~~~----~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 69 LYEALDQHRIF----EPDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred HHHHHHHHHHh----Cccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 99999888643 2222 45899999999999999999999987544
No 71
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.46 E-value=5.1e-13 Score=100.56 Aligned_cols=112 Identities=16% Similarity=0.356 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHH----HHHHhh-ccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCC
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVA----ILKLFR-SITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIG 163 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T 163 (275)
+|+++++|+.|....+.. .+.... ...... ..+++..+...+++.+.++.+ |+.|++++|++|+++|
T Consensus 2 ~ra~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t 73 (118)
T cd03187 2 ERAIVEQWLEVESHQFDP-------PASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVY-EARLSKSKYLAGDSFT 73 (118)
T ss_pred chHHHHHHHHHHHhhcch-------hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH-HHHcccCcccCCCCcc
Confidence 688999999998877553 111111 111111 113455566788999999999 9999999999999999
Q ss_pred hhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcC
Q 023929 164 LVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENF 213 (275)
Q Consensus 164 ~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l 213 (275)
+||+.+++.+.+.... +... ..+.+|++++|++++.++|++++++
T Consensus 74 ~aDi~l~~~~~~~~~~----~~~~-~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 74 LADLSHLPYLQYLMAT----PFAK-LFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHHHHHc----cchh-hhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9999999988887531 1111 1348999999999999999998864
No 72
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.3e-13 Score=113.31 Aligned_cols=205 Identities=20% Similarity=0.230 Sum_probs=143.5
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCC----ceEEEc--CCC-----C-----C------------------chHHHhcCC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVP----YEFVAE--DLS-----N-----K------------------SDLLLKYNP 48 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~----y~~~~v--~~~-----~-----~------------------~~~~~~~~P 48 (275)
++-||..-.||++++..+.++.+|++ +..+.- +.. + . .+-+....|
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 46789888999999999999999986 222111 000 0 0 011112223
Q ss_pred CC-C--cccEEEeC---CeeeechHHHHHHHHHhCC---------CCCCCCCCHHHHHHHHHHHHHHHhccccccccccc
Q 023929 49 VH-K--KIPVLVHG---GKPVCESMIILEYIEEMWP---------QNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIP 113 (275)
Q Consensus 49 ~~-g--~vP~L~~~---g~~l~eS~aIl~yL~~~~~---------~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (275)
.+ | +||||.|- ..+=.||..|++.+...|. .-.|+|.+ .+++++.+.+|+.+..++.
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNG------ 188 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNG------ 188 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCc------
Confidence 10 2 69999983 3444799999999994442 12366665 7999999999998875530
Q ss_pred hhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCC--cccCCCCChhHhhhHhHHHHHHH-hhhhc--ccccC
Q 023929 114 FISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERN--FFNGDNIGLVDIAFGSMLYWMQV-IGDVV--GVKLF 188 (275)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~--fl~G~~~T~ADi~l~~~l~~~~~-~~~~~--~~~~~ 188 (275)
.++-.|.. ..+..+...+++-+.|+.+ |..|+++. |++|+++|.|||-+++.+-+++. ...++ ....+
T Consensus 189 -----VYk~GFA~-~~e~Ye~~V~~lfe~LDr~-E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i 261 (319)
T KOG2903|consen 189 -----VYKCGFAE-KQEAYEEEVNQLFEALDRC-EDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI 261 (319)
T ss_pred -----eeeecccc-ccchHHHHHHHHHHHHHHH-HHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh
Confidence 12222333 5677788889999999999 99998776 99999999999999998888873 22222 22333
Q ss_pred CCCCCccHHHHHHHhcc-cchhhhcCCCchhHHHHH
Q 023929 189 DSHKFPSLHTWFENFKQ-VPEIEENFPNRDDIWFIS 223 (275)
Q Consensus 189 ~~~~~P~l~~w~~~~~~-~p~~~~~l~~~~~~~~~~ 223 (275)
+.+||+|..|.+.+.+ .|+++.+..=.+...++.
T Consensus 262 -r~~Yp~l~~~lk~iY~~~~~~~~Ttd~~hIk~~Y~ 296 (319)
T KOG2903|consen 262 -RDEYPNLHNWLKNIYWNIPGFSSTTDFNHIKLHYY 296 (319)
T ss_pred -hccCcHHHHHHHHHHhhccchhhccchhHHhhhhc
Confidence 5699999999999999 999999976555444443
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.45 E-value=6.7e-13 Score=99.84 Aligned_cols=111 Identities=19% Similarity=0.313 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHh-h-----ccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccC
Q 023929 86 NPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLF-R-----SITGQELENAKKEILEILQTLEEHGLRERNFFNG 159 (275)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G 159 (275)
|+.+|+++++|+.+.+..+.. +........... . ....+..++..+++.+.|+.+ |+.|++++|++|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~~l~g 73 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLY------PIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYL-DTRLAGSPYVAG 73 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------HHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHH-HHHhcCCCcccC
Confidence 578999999999998777432 111100000000 0 113445677888999999999 999998899999
Q ss_pred CCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchh
Q 023929 160 DNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEI 209 (275)
Q Consensus 160 ~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 209 (275)
+++|+||+++++.+.++... +.++ ...+|+|.+|++++.++|++
T Consensus 74 d~~t~aDi~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 74 DRFTIADITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred CCCCHHHHHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 99999999999999887543 4443 35899999999999999974
No 74
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.43 E-value=8.1e-13 Score=101.23 Aligned_cols=97 Identities=22% Similarity=0.356 Sum_probs=77.4
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCC----------------CCcccCCCCChhHhhhHhHHHHHHHhh-hh
Q 023929 120 ILKLFRSITGQELENAKKEILEILQTLEEHGLRE----------------RNFFNGDNIGLVDIAFGSMLYWMQVIG-DV 182 (275)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~----------------~~fl~G~~~T~ADi~l~~~l~~~~~~~-~~ 182 (275)
+..++.+.+++..+...+++.+.|+.+ |++|++ ++|++|+++|+||+.+++.+.++.... ..
T Consensus 15 ~~~~~~~~~~~~~e~~~~~l~~~L~~l-d~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~ 93 (134)
T cd03198 15 FSAYIKNSNPALNENLEKGLLKALKKL-DDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKY 93 (134)
T ss_pred HHHHHcCCChhhhHHHHHHHHHHHHHH-HHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 344444445677788899999999999 999976 679999999999999999998876422 22
Q ss_pred cccccCCCCCCccHHHHHHHhcccchhhhcCCCchhH
Q 023929 183 VGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDI 219 (275)
Q Consensus 183 ~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~ 219 (275)
.+..+ .+++|+|.+|++++.+||+++++....+..
T Consensus 94 ~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i 128 (134)
T cd03198 94 RNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEI 128 (134)
T ss_pred cCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHH
Confidence 24443 358999999999999999999999876543
No 75
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.40 E-value=4.1e-12 Score=96.31 Aligned_cols=110 Identities=19% Similarity=0.407 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCC---CCCcccCCCC
Q 023929 86 NPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLR---ERNFFNGDNI 162 (275)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~---~~~fl~G~~~ 162 (275)
|+..|+++++|+.+...... ..+...+.+ . . .+.+.+.++.+ |+.|+ +++|++| ++
T Consensus 1 d~~~ra~~~~~~~~~~~~~~------------~~~~~~~~~--~-~----~~~~~~~l~~L-e~~L~~~~~~~fl~G-~~ 59 (120)
T cd03203 1 DPAKREFADELLAYTDAFTK------------ALYSSLIKG--D-P----SAEAAAALDYI-ENALSKFDDGPFFLG-QF 59 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHH------------HHHHHHhcC--C-c----hHHHHHHHHHH-HHHHHhcCCCCCcCC-Cc
Confidence 57899999999999322221 022223322 1 1 22335566667 66665 5899999 99
Q ss_pred ChhHhhhHhHHHHHHH-hhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 163 GLVDIAFGSMLYWMQV-IGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 163 T~ADi~l~~~l~~~~~-~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
|+||+++++.+.++.. .....+.++ .+++|+|.+|+++|+++|+++++.++.+.
T Consensus 60 tlADi~l~~~~~~~~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~ 114 (120)
T cd03203 60 SLVDIAYVPFIERFQIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQE 114 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHH
Confidence 9999999999987763 222335544 35899999999999999999999887544
No 76
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.39 E-value=1.1e-12 Score=99.12 Aligned_cols=109 Identities=22% Similarity=0.377 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhh
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIA 168 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~ 168 (275)
+++++++|+.+....+.+ ..........+. .+...+...+++.+.++.+ |+.|++++|++|+++|+||++
T Consensus 2 ~~a~~~~wl~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~s~aDi~ 71 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQ-------RLRDYYYPILFG--GAEPPEEKLDKLEEALDFL-ETFLEGSDYVAGDQLTIADLS 71 (118)
T ss_pred hHHHHHHHHHhhhchHHH-------HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHH-HHHHccCCeeCCCCcCHHHHH
Confidence 588999999998776542 111111111111 2244566788899999999 999998899999999999999
Q ss_pred hHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcC
Q 023929 169 FGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENF 213 (275)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l 213 (275)
+++.+.++.... +. +...+|+|.+|+++|.++|++++..
T Consensus 72 l~~~~~~~~~~~---~~---~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 72 LVATVSTLEALL---PL---DLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHHHHHHHhc---CC---ChhhCchHHHHHHHHHcccchHHHH
Confidence 999999885311 22 2347999999999999999999854
No 77
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.39 E-value=1.7e-12 Score=99.24 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCC---CCcccCCCCChh
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRE---RNFFNGDNIGLV 165 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~---~~fl~G~~~T~A 165 (275)
+++++++..+.+.+.... .....+.. .+...+...+.+.+.+..+ |+.|++ ++|++|+++|+|
T Consensus 3 e~~~vd~~~~~~~d~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~~l~G~~~T~A 68 (126)
T cd03210 3 EAALIDMVNDGVEDLRLK------------YVRMIYQN-YEAGKDDYIKDLPEQLKPF-EKLLSKNNGKGFIVGDKISFA 68 (126)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHhcCc-HHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCeeeCCCccHH
Confidence 678888888887766442 11111211 2334456677788999999 999963 589999999999
Q ss_pred HhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchhH
Q 023929 166 DIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDDI 219 (275)
Q Consensus 166 Di~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~~ 219 (275)
|+.+++.+.++... +... .+.+|+|.+|+++|.++|+++++++.....
T Consensus 69 Di~l~~~~~~~~~~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~~~ 116 (126)
T cd03210 69 DYNLFDLLDIHLVL----APGC--LDAFPLLKAFVERLSARPKLKAYLESDAFK 116 (126)
T ss_pred HHHHHHHHHHHHHh----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcCCC
Confidence 99999999888642 1222 458999999999999999999998875443
No 78
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=3.9e-12 Score=94.39 Aligned_cols=106 Identities=18% Similarity=0.341 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChh
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS---ITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLV 165 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~A 165 (275)
+|+++++|+.+..+.+.+ .+..........+ ......+...+++.+.++.+ |+.|++++|++|+++|+|
T Consensus 2 ~ra~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-E~~L~~~~~l~g~~~t~a 73 (110)
T cd03180 2 ARARADRWMDWQTSTLNP-------AFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAIL-DAQLAGRPYLAGDRFTLA 73 (110)
T ss_pred chhHHHHHHHHHHhhcCh-------HHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHH-HHHhCCCCcccCCCCCHH
Confidence 588999999999887653 2221111111111 12334466788999999999 999998999999999999
Q ss_pred HhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchh
Q 023929 166 DIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEI 209 (275)
Q Consensus 166 Di~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 209 (275)
|+.+++.+...... + ...+++|+|++|+++|+++|++
T Consensus 74 Di~~~~~~~~~~~~----~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 74 DIPLGCSAYRWFEL----P---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHHHHHc----c---cccccCchHHHHHHHHHhCCCC
Confidence 99999887543211 2 1256899999999999999975
No 79
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.37 E-value=2e-12 Score=98.13 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhH
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFR--SITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVD 166 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~AD 166 (275)
+|+++++|+.+....+.+ .+..... .... ..+....+...+++.+.++.+ |+.|++++|++|+++|+||
T Consensus 1 ~ra~~~~wl~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~siaD 71 (123)
T cd03181 1 EEAQVLQWVSFANTELLP-------AVAAWFL-PLLGIAPYNKKSVEAALEELDRVLGVL-EERLLKRTYLVGERLTLAD 71 (123)
T ss_pred ChHHHHHHHHHHHhhhHH-------HHHHHHH-HHcCccCCCHHHHHHHHHHHHHHHHHH-HHHHccCceeccCCccHHH
Confidence 478899999999887653 1111111 1111 113445667788899999999 9999999999999999999
Q ss_pred hhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCch
Q 023929 167 IAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRD 217 (275)
Q Consensus 167 i~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~ 217 (275)
+.+++.+.++.... .+... .+.+|++.+|.+++.++|++++++++.+
T Consensus 72 i~l~~~~~~~~~~~--~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 72 IFVAGALLLGFTYV--FDKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHHHHHHHH--cCHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 99999998874321 12222 3479999999999999999999988643
No 80
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.36 E-value=2.5e-12 Score=93.44 Aligned_cols=96 Identities=19% Similarity=0.337 Sum_probs=74.3
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhC
Q 023929 70 LEYIEEMWPQNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEH 149 (275)
Q Consensus 70 l~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~ 149 (275)
+|||++.- +++|+++.+++.+++|++.....+.. ...+++.+.++.+ |+
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~---------------------------~~~~~~~~~l~~l-e~ 49 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE---------------------------GSSKEKAAVLRAL-NS 49 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc---------------------------CCHHHHHHHHHHH-HH
Confidence 47899883 49999999999999999976533210 1233455678888 99
Q ss_pred cCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhccc
Q 023929 150 GLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQV 206 (275)
Q Consensus 150 ~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~ 206 (275)
.|++++|++|+++|+||+++++.+.+. +.. .+.+|++.+|+++|+++
T Consensus 50 ~L~~~~fl~Gd~~tiADi~l~~~l~~~-------~~~---~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 50 ALGRSPWLVGSEFTVADIVSWCALLQT-------GLA---SAAPANVQRWLKSCENL 96 (96)
T ss_pred HHcCCCccCCCCCCHHHHHHHHHHHHc-------ccc---cccChHHHHHHHHHHhC
Confidence 999999999999999999999887643 211 35899999999999763
No 81
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.36 E-value=4e-12 Score=98.62 Aligned_cols=110 Identities=17% Similarity=0.287 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhH-----HHHHHHHHHHHHHHHhCcCC--CCCcccCC
Q 023929 88 YDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQEL-----ENAKKEILEILQTLEEHGLR--ERNFFNGD 160 (275)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~l~e~~L~--~~~fl~G~ 160 (275)
.+++.+++.++.+.+.... .++..+.. ++.. +-..+.+.+.++.+ |+.|+ +++|++|+
T Consensus 2 ~e~a~iD~i~~~v~D~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l-E~~L~~~~~~~l~G~ 66 (137)
T cd03208 2 KERALIDMYVEGTADLMEM------------ILMLPFLP--PEEKEAKLALIKEKAKNRYFPVF-EKVLKSHGQDFLVGN 66 (137)
T ss_pred hHHHHHHHHHHHHHHHHHH------------HHHHccCC--hhhHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCeeeCC
Confidence 3678899999888887552 22222211 1111 22244567899999 99997 77899999
Q ss_pred CCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCCCchh
Q 023929 161 NIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFPNRDD 218 (275)
Q Consensus 161 ~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~~~~~ 218 (275)
++|+||+.+++.+.++... .... .+.+|+|.+|++++.++|+++++++....
T Consensus 67 ~~T~ADi~l~~~l~~~~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~~ 118 (137)
T cd03208 67 KLSRADIHLLEAILMVEEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGSP 118 (137)
T ss_pred CCCHHHHHHHHHHHHHHHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCCC
Confidence 9999999999999988543 2222 45899999999999999999999986443
No 82
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.33 E-value=1.8e-12 Score=95.41 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccch
Q 023929 129 GQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPE 208 (275)
Q Consensus 129 ~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~ 208 (275)
++..+...+++.+.++.+ |+.|++++|++|+++|+||+++++.+.++... + . .+.+|+|++|++++.++|+
T Consensus 25 ~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~--~~~~p~l~~w~~~~~~~p~ 95 (103)
T cd03207 25 EPARMAGFGSYDDVLAAL-EQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--L--LPERPAFDAYIARITDRPA 95 (103)
T ss_pred cchhhhhhhhHHHHHHHH-HHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--C--CCCChHHHHHHHHHHcCHH
Confidence 334566778899999999 99999999999999999999999999988532 2 2 3589999999999999999
Q ss_pred hhhcCCC
Q 023929 209 IEENFPN 215 (275)
Q Consensus 209 ~~~~l~~ 215 (275)
+++++..
T Consensus 96 ~~~~~~~ 102 (103)
T cd03207 96 FQRAAAI 102 (103)
T ss_pred HHHHhcc
Confidence 9998763
No 83
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.33 E-value=7.7e-12 Score=95.43 Aligned_cols=114 Identities=20% Similarity=0.368 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhccccccccccchhhHHHHHHHhh-c-cchhhHHHHHHHHHHHHHHHHhCc-CCCCCcccCCCCChhH
Q 023929 90 RALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFR-S-ITGQELENAKKEILEILQTLEEHG-LRERNFFNGDNIGLVD 166 (275)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~l~~l~e~~-L~~~~fl~G~~~T~AD 166 (275)
++++++|+.|....+..... ..+........+. . ..++..+...+++.+.++.+ |+. +++++|++|+++|+||
T Consensus 2 ra~~~~wl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~~l~Gd~~t~AD 77 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCA---KYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLL-ENYFLKDKPFLAGDEISIAD 77 (126)
T ss_pred cccHHHHHHHHHhhhHhhHH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHhcCCCcccCCCCCHHH
Confidence 56788999888776542100 0000001111121 1 13555667788999999999 986 5667899999999999
Q ss_pred hhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcc--cchhhhcC
Q 023929 167 IAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQ--VPEIEENF 213 (275)
Q Consensus 167 i~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~--~p~~~~~l 213 (275)
+.+++.+.+.... +.+. .+++|+|.+|++++.+ +|++++..
T Consensus 78 i~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 78 LSAVCEIMQPEAA----GYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHHHHhc----CCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 9999888777532 3333 3589999999999999 99998854
No 84
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.32 E-value=5.9e-12 Score=92.16 Aligned_cols=71 Identities=23% Similarity=0.454 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchh
Q 023929 131 ELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEI 209 (275)
Q Consensus 131 ~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 209 (275)
..+...+++.+.++.+ |+.|++++|++|+++|+||+.+++.+.+... . + +..+++|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~---~-~---~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLL-EEHLAGRDWLAGDRPTIADVAVYPYVALAPE---G-G---VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHH-HHHHccCCccCCCCCCHHHHHHHHHHHHHhc---c-C---CChhhCcHHHHHHHHHHhCcCC
Confidence 4566788999999999 9999999999999999999999988876532 1 2 2245899999999999999975
No 85
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.31 E-value=5.9e-12 Score=91.07 Aligned_cols=73 Identities=30% Similarity=0.639 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccc
Q 023929 129 GQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVP 207 (275)
Q Consensus 129 ~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p 207 (275)
++..+...+++.+.|+.+ |+.|++++|++|+++|+||+++++.+.++... +.... .+++|+|.+|+++|.++|
T Consensus 23 ~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVL-EKRLKGGPYLVGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 446677899999999999 99999999999999999999999999999765 33332 269999999999999997
No 86
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.29 E-value=3.2e-11 Score=91.45 Aligned_cols=83 Identities=20% Similarity=0.466 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHhCcCCC-CCcccCCCCChhHhhhHhHHHHHHHh-hhhcccccCCCCCCccHHHHHHHhcccchhh
Q 023929 133 ENAKKEILEILQTLEEHGLRE-RNFFNGDNIGLVDIAFGSMLYWMQVI-GDVVGVKLFDSHKFPSLHTWFENFKQVPEIE 210 (275)
Q Consensus 133 ~~~~~~l~~~l~~l~e~~L~~-~~fl~G~~~T~ADi~l~~~l~~~~~~-~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~ 210 (275)
++..+.+.+.+..+ |+.|++ ++|++||++|+||+++++.+.++... ....+... .+.+|+|.+|+++|.+||+++
T Consensus 29 ~~~~~~l~~~l~~L-e~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~~P~l~~w~~rl~~rps~~ 105 (121)
T cd03201 29 DGTEQALLDELEAL-EDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PESLTSVKSYMKALFSRESFV 105 (121)
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cccchHHHHHHHHHHCCchhh
Confidence 55677899999999 999984 79999999999999999988777642 22123222 369999999999999999999
Q ss_pred hcCCCchh
Q 023929 211 ENFPNRDD 218 (275)
Q Consensus 211 ~~l~~~~~ 218 (275)
++++..+.
T Consensus 106 ~t~~~~~~ 113 (121)
T cd03201 106 KTKAEKED 113 (121)
T ss_pred hcCCCHHH
Confidence 99886544
No 87
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.23 E-value=3.2e-11 Score=82.56 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 10 LLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 10 ~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
+.+++|.|++++|++.|+||+.+.... . ...+|. |+||+|++||.+++||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~----~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN----A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC----c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 357789999999999999999884321 1 126787 89999999999999999999999864
No 88
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.22 E-value=1.8e-11 Score=91.88 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHhCcCC-CCCcccCCCCCh
Q 023929 87 PYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFR-SITGQELENAKKEILEILQTLEEHGLR-ERNFFNGDNIGL 164 (275)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~e~~L~-~~~fl~G~~~T~ 164 (275)
|.+|+++++|+.++.+.+... ....++ ...+. ...+...+...+.+.+.++.+ |..|+ +++||+| ++|+
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l-e~~l~~~~~~l~G-~fSi 71 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPI-RVERST------EVVFAGAKAEPLSEAAQAAAEKLIAVA-EALLPPGAANLFG-EWCI 71 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHH-HHhCCc------cceecCCCCCCCCHHHHHHHHHHHHHH-HHHHhcCCCcccC-CccH
Confidence 458999999999999987632 000010 00011 101234466788888888999 99995 5589999 5999
Q ss_pred hHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCC
Q 023929 165 VDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFP 214 (275)
Q Consensus 165 ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~ 214 (275)
||+.+++.+.|+... |.++ . |++.+|.+||.+||++++.++
T Consensus 72 AD~~l~~~~~~~~~~----g~~l----~-p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 72 ADTDLALMLNRLVLN----GDPV----P-ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHHHHHHHHHHc----CCCC----C-HHHHHHHHHHHCCHHHHHHHh
Confidence 999999999998643 5443 2 899999999999999999765
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.20 E-value=2.4e-11 Score=82.58 Aligned_cols=68 Identities=29% Similarity=0.623 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHH
Q 023929 130 QELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFEN 202 (275)
Q Consensus 130 ~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~ 202 (275)
...++..+++.+.++.+ |+.|++++|++|++||+||+.+++.+.++..... +..+ .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~l-e~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDAL-EDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 45678899999999999 9999999999999999999999999999986533 2233 4699999999986
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.20 E-value=5.9e-11 Score=88.14 Aligned_cols=77 Identities=26% Similarity=0.422 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhCcCCCC----------CcccCCCCChhHhhhHhHHHHHHHhhhhcccccC--CCCCCcc
Q 023929 128 TGQELENAKKEILEILQTLEEHGLRER----------NFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLF--DSHKFPS 195 (275)
Q Consensus 128 ~~~~~~~~~~~l~~~l~~l~e~~L~~~----------~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~--~~~~~P~ 195 (275)
+.+..+...+++.+.++.+ |+.|+++ +|++|+++|+||+++++.+.++... +.+.. ....+|+
T Consensus 23 ~~~~i~~~~~~l~~~l~~L-E~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~ 97 (111)
T cd03204 23 NVEYLKKILDELEMVLDQV-EQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPN 97 (111)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChH
Confidence 5666788899999999999 9999754 5999999999999999999998643 22211 0257999
Q ss_pred HHHHHHHhcccchh
Q 023929 196 LHTWFENFKQVPEI 209 (275)
Q Consensus 196 l~~w~~~~~~~p~~ 209 (275)
|.+|+++|.+||++
T Consensus 98 l~~w~~rv~aRpsf 111 (111)
T cd03204 98 LEAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999985
No 91
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.17 E-value=3.4e-11 Score=88.58 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhcccccc-ccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHh
Q 023929 89 DRALARFWIKFAEDKLVRTT-TLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDI 167 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi 167 (275)
+|+++++|+.+.++.+.... ....+. ... ......++..+...+++.+.++.+ |+.|++++|++|+++|+||+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~g~~~slaDi 75 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLR----VYL-GLGEADAEVLAFLRERGHAALAVL-EAHLAGRDFLVGDALTIADI 75 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeE----eec-cCCCCCHHHHHHHHHHHHHHHHHH-HHHHccCccccCCCCCHHHH
Confidence 58999999999877754311 111110 000 011113555677899999999999 99999889999999999999
Q ss_pred hhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhc
Q 023929 168 AFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFK 204 (275)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~ 204 (275)
++++.+.++... +.+ ..++|++.+|+++++
T Consensus 76 ~~~~~~~~~~~~----~~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 76 ALAAYTHVADEG----GFD---LADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHhcccc----CCC---hHhCccHHHHHHhhC
Confidence 999999887532 322 457999999999974
No 92
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.17 E-value=1.3e-10 Score=81.28 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=63.4
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
+++||+.++||+|.+++.+|+..||+|+.+.++-.....++.+.++. .++|++..||..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 69999999999999999999999999999998765445566677776 799999999999999999999984
No 93
>PRK10638 glutaredoxin 3; Provisional
Probab=99.17 E-value=1.9e-10 Score=81.25 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=65.8
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
|+++++|+.++||+|++++.+|+++|++|+.+.++... ..+++.+.++. +++|++..||..+.+...+..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHHc
Confidence 88999999999999999999999999999999997653 45778899998 8999999999999999888776543
No 94
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.2e-10 Score=89.86 Aligned_cols=183 Identities=16% Similarity=0.244 Sum_probs=126.7
Q ss_pred CChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCCCCC-CCCHHH
Q 023929 11 LSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQNPLM-PNNPYD 89 (275)
Q Consensus 11 ~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~l~-p~~~~~ 89 (275)
...-|..|..+|+..++||.++-.. +.+| ++|- |++|.|..+...++|-.+|..+.+.+... |. .-+-.+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~q 103 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSEDQ 103 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhHH
Confidence 4456899999999999999987654 2333 6786 89999999999999999999999988532 22 123347
Q ss_pred HHHHHHHHHHHHhccccccc---------------------c------ccchhhHHHHHHHhhcc--chhhHHHHHHHHH
Q 023929 90 RALARFWIKFAEDKLVRTTT---------------------L------AIPFISVVAILKLFRSI--TGQELENAKKEIL 140 (275)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~---------------------~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 140 (275)
++.++.+++.++..+..+-. + ..++..+....+.+... +..+.++..++..
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 77777777776654321100 0 11222222222222211 4456688899999
Q ss_pred HHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHh--hhhcccccCCCCCCccHHHHHHHhcc
Q 023929 141 EILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVI--GDVVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 141 ~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~--~~~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
..++.+ +..|+.++|+.|++||-+|..+++.+..+-.. ...--.+. .++|++|-+++.|+.+
T Consensus 184 kc~~aL-sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~--lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 184 KCCRAL-SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI--LKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHH-HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH--HHHhHHHHHHHHHHHH
Confidence 999999 99999999999999999999999988776421 10000111 4478999999998876
No 95
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.08 E-value=1.5e-10 Score=86.86 Aligned_cols=71 Identities=18% Similarity=0.350 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhCcC---CCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchh
Q 023929 133 ENAKKEILEILQTLEEHGL---RERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEI 209 (275)
Q Consensus 133 ~~~~~~l~~~l~~l~e~~L---~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 209 (275)
+...+.+.+.++.+ |..| ++++|++|+ +|+||+.+++.+.+.... +.+ ..|+|++|++++.++|++
T Consensus 40 ~~~~~~~~~~~~~l-e~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~~~-----~~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 40 EAVQADIARIEAIW-AECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY----GLP-----LSPAAQAYVDALLAHPAM 108 (114)
T ss_pred HHHHHHHHHHHHHH-HHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc----CCC-----CCHHHHHHHHHHHCCHHH
Confidence 34444455555555 5544 577899999 999999999998888532 322 239999999999999999
Q ss_pred hhcCC
Q 023929 210 EENFP 214 (275)
Q Consensus 210 ~~~l~ 214 (275)
++.++
T Consensus 109 ~~~~~ 113 (114)
T cd03194 109 QEWIA 113 (114)
T ss_pred HHHHh
Confidence 98764
No 96
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.06 E-value=1.4e-10 Score=84.69 Aligned_cols=68 Identities=28% Similarity=0.502 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhCcCCCCC--cccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcc
Q 023929 129 GQELENAKKEILEILQTLEEHGLRERN--FFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 129 ~~~~~~~~~~l~~~l~~l~e~~L~~~~--fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
+...+...+++.+.++.+ |+.|++++ |++|++||+||+.+++.+..+.. . +. .+++|+|.+|++||++
T Consensus 30 ~~~~~~~~~~~~~~l~~l-~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~-----~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 30 EASGDFSREELPKALKIL-EKHLAERGGDFLVGDKPTLADIAVFGFLASLRW-----A-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC-----C-HH--TTTCHHHHHHHHHHHT
T ss_pred hhhHHhhHHHHHHHHHHH-HHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh-----c-cc--ccccHHHHHHHHhhcC
Confidence 445677788899999999 99997666 99999999999999998876642 2 11 2589999999999975
No 97
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.04 E-value=1.4e-09 Score=74.60 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=61.3
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++++|+.++||+|.+++.+|+..|++|+.+.++.......+...... .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999998765433445555665 689999999999999999999974
No 98
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.04 E-value=6.5e-10 Score=81.71 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhc----cchhhHHHHHHHHHHHHHHHHhCcCCC--CCcccCCCC
Q 023929 89 DRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRS----ITGQELENAKKEILEILQTLEEHGLRE--RNFFNGDNI 162 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~l~e~~L~~--~~fl~G~~~ 162 (275)
++++++++++...+.... ..+..+.. ..++..+...+.+.+.++.+ |+.|++ ++|++|+++
T Consensus 2 e~~~v~~~~~~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~~~~~G~~~ 68 (104)
T cd03192 2 EAARVDALVDTIADLRAE------------FAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKL-EKILKENGGGYLVGDKL 68 (104)
T ss_pred hHHHHHHHHHHHHHHHHH------------HHHHhhcCchHHHHHHHHHHHHHhhHHHHHHH-HHHHHHcCCCeeeCCCc
Confidence 578889999887776442 22222211 02445566788899999999 999977 899999999
Q ss_pred ChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHh
Q 023929 163 GLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENF 203 (275)
Q Consensus 163 T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~ 203 (275)
|+||+++++.+.++... +... ....+|++.+|++++
T Consensus 69 s~aDi~l~~~~~~~~~~----~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 69 TWADLVVFDVLDYLLYL----DPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred cHHHHHHHHHHHHHHhh----Cchh-hHHhChhHHHHHHhC
Confidence 99999999999988643 2221 144899999999985
No 99
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.99 E-value=1.1e-09 Score=83.47 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcc
Q 023929 131 ELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 131 ~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
..+...+++++.++.+ |+.|++++|++|+++|+||+.+++.+.+..... +.++ .+++|++.+|++||.+
T Consensus 55 ~~~~~~~~~~~~l~~l-~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~---~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 55 GREAALANFRAALEPL-RATLKGQPFLGGAAPNYADYIVFGGFQWARIVS---PFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred chHHHHHHHHHHHHHH-HHHHcCCCccCCCCCchhHHHHHHHHHHHHHcC---cccc--cccCChHHHHHHHHhc
Confidence 3467788899999999 999999999999999999999999999886421 3333 3589999999999986
No 100
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.97 E-value=1.5e-09 Score=78.62 Aligned_cols=70 Identities=31% Similarity=0.672 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHh
Q 023929 129 GQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENF 203 (275)
Q Consensus 129 ~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~ 203 (275)
++..+...+++.+.++.+ |+.|++++|++|+++|+||+.+++.+.++.......+ . .+.+|++.+|+++|
T Consensus 31 ~~~~~~~~~~~~~~~~~l-~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 31 EAALEEAREELAAALAAL-EKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhh--h--hccCccHHHHHHhC
Confidence 556677888999999999 9999999999999999999999999999975432111 2 35899999999875
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.89 E-value=2e-09 Score=76.74 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhccccc--CCCCCCccHHHHHHHhc
Q 023929 131 ELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKL--FDSHKFPSLHTWFENFK 204 (275)
Q Consensus 131 ~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~--~~~~~~P~l~~w~~~~~ 204 (275)
...+..+++.+.++.+ |+.|++++|++|+++|+||+++++.+.++... .. +... ...+.+|+|++|++++.
T Consensus 16 ~~~~~~~~~~~~l~~l-e~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~-~~-~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 16 LTREIYSLAKKDLKAL-SDLLGDKKFFFGDKPTSLDATVFGHLASILYA-PL-PNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCccCCCCCCHHHHHHHHHHHHHHhc-CC-CChHHHHHHHhCcHHHHHHHHhC
Confidence 3446788899999999 99999999999999999999999999887532 00 1100 01347999999999974
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.88 E-value=1.2e-08 Score=70.03 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 10 LLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 10 ~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
..||+|.++.++|+.+|++|+.+...-. ..+|. |++|+|+++|..+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 3679999999999999999988755321 24677 89999999999999999999999875
No 103
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.84 E-value=1.5e-08 Score=69.56 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=58.8
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeechHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILE 71 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~ 71 (275)
+++||+.++||+|++++.+|+..||+|+.+.++.. ...+++.+.++. +++|++..||..+.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999999988754 345678888897 899999999998887666544
No 104
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.77 E-value=2e-08 Score=77.84 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcc
Q 023929 133 ENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 133 ~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
++.++.+.+.++.+++...++++|++|++||+||+.+++.+..+..+. +.+ +..++|++.+|++||++
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~---~~~--Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHP---AFK--DMVEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhc---ccc--chhhCcCHHHHHHHHHH
Confidence 445666777776664555567889999999999999999998886542 220 24589999999999986
No 105
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.74 E-value=4.8e-08 Score=68.51 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=49.8
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeee
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~ 64 (275)
++++|+.++||+|.+++-+|+++||+|+.+.++-.....+..+.++. .++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 49999999999999999999999999999999754323333444676 79999999886654
No 106
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.73 E-value=6.5e-08 Score=65.48 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=60.2
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEeCCeeeechHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEY 72 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~y 72 (275)
++++|+.++||+|++++.+|+.+|++|+.+.++... ..+++.+.++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 479999999999999999999999999998887553 45677788887 7999999999999999888754
No 107
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.70 E-value=7.8e-08 Score=69.92 Aligned_cols=68 Identities=25% Similarity=0.427 Sum_probs=55.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHh
Q 023929 128 TGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENF 203 (275)
Q Consensus 128 ~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~ 203 (275)
.++..+...+++.+.++.+ |+.|++++| +++|+||+.+++.+.+...... +... .+++|+|.+|+++|
T Consensus 31 ~~~~~~~~~~~~~~~l~~l-e~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 31 SQPWLERQRGKIERALDAL-EAELAKLPL---DPLDLADIAVACALGYLDFRHP--DLDW--RAAHPALAAWYARF 98 (98)
T ss_pred ChHHHHHHHHHHHHHHHHH-HHhhhhCCC---CCCCHHHHHHHHHHHHHHhHcc--Ccch--hhhChHHHHHHHhC
Confidence 4566778899999999999 999998888 8999999999999998863211 2222 35899999999986
No 108
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.69 E-value=8.3e-08 Score=65.40 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=56.5
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEeCCeee--echHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVHGGKPV--CESMIILEYI 73 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~~g~~l--~eS~aIl~yL 73 (275)
+++|+.++||+|++++.+|++.|++|..+.++... ..+++.+.++. +.+|+++.+|..+ .++..|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 89999999999999999999999999998886542 23567778887 7999999998877 5566665554
No 109
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.69 E-value=7.3e-08 Score=65.54 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=53.9
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeech
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCES 66 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS 66 (275)
++++|+.++||+|.+++.+|++.|++|+.+.++.. ...+++.+.+|. +++|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 47999999999999999999999999999998764 334677888898 8999999988777543
No 110
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.67 E-value=1.3e-07 Score=65.07 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=58.2
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCC-cccEEEeCCeeeechHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHK-KIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g-~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
+++||+.++||+|.+++-+|+..||+|+.+.++.. +..+++.+.... . ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 48999999999999999999999999999998754 223444444443 3 89999999999999998887653
No 111
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.60 E-value=7.7e-08 Score=73.40 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=57.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhh-hcccccCCCCCCccHHHHHHHhc
Q 023929 128 TGQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGD-VVGVKLFDSHKFPSLHTWFENFK 204 (275)
Q Consensus 128 ~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~-~~~~~~~~~~~~P~l~~w~~~~~ 204 (275)
+....++..+...+.++.+ ++.|++++|++|++||.||+.+++.+..+..... -...... .+.+|+|.+|++||.
T Consensus 51 gr~~~ee~~~~~~~~l~aL-s~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 51 DDKTLDQVIEEVDQCCQAL-SQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 3456678889999999999 9999999999999999999999999887753200 0011111 448999999999984
No 112
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.9e-06 Score=73.62 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHHHHhCCCCCCCCC-CHH
Q 023929 11 LSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYIEEMWPQNPLMPN-NPY 88 (275)
Q Consensus 11 ~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL~~~~~~~~l~p~-~~~ 88 (275)
.++-|..+.++++..+-|.+....+-.. ..|. |++|+|+. +|..++.-..|+.+|...-.+-.+-+. ...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC-------CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 4678999999999999665555443221 3566 89999997 569999999999999873111112222 256
Q ss_pred HHHHHHHHHHHHHhcccccccc---------------------ccch------hhHHHHHH---HhhccchhhHHHHHHH
Q 023929 89 DRALARFWIKFAEDKLVRTTTL---------------------AIPF------ISVVAILK---LFRSITGQELENAKKE 138 (275)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~~~---------------------~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~ 138 (275)
+++....|.+++...+..+..+ -.|+ -.+..... ...+...+..++....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 7788888888877664432111 0111 11111111 0011122345666778
Q ss_pred HHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhccccc-CCCCCCccHHHHHHHhcc
Q 023929 139 ILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKL-FDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 139 l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~-~~~~~~P~l~~w~~~~~~ 205 (275)
..+.+..+ ++.|++++|+.||+||.-|+.++..+..+....-- ...+ .-...++||.++++++.+
T Consensus 168 Aska~~~L-S~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp-~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLL-STLLGSKKFFFGDKPSSLDALLFSYLAILLQVALP-NDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHH-HHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCC-chhHHHHHHhcchHHHHHHHHHH
Confidence 88889999 99999999999999999999999988874211000 0000 002248999999999987
No 113
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.58 E-value=2.6e-07 Score=67.57 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHhCcCC-CCCcccCCCCC
Q 023929 86 NPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSI-TGQELENAKKEILEILQTLEEHGLR-ERNFFNGDNIG 163 (275)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~e~~L~-~~~fl~G~~~T 163 (275)
|..+|++.+++..|..+.|.+ +-.+....-.|... ...-.++..+.+.+.+... +.+|. +++||.|+ .|
T Consensus 1 D~~~RArAR~vqAwlrSdf~~-------lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a-~~ll~~g~~~LFGe-ws 71 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMA-------LRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVA-ERLLADGGPNLFGE-WS 71 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HH-------HHHHS-THHHHS--------HHHHHHHHHHHHHH-HHHTTT--SSTTSS---
T ss_pred CHHHHHHHHHHHHHHHcccHH-------HHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHH-HHHhccCCCCcccc-ch
Confidence 567899999999999998762 22211111222221 1223466677778888888 88886 57899997 99
Q ss_pred hhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhhcCC
Q 023929 164 LVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEENFP 214 (275)
Q Consensus 164 ~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~l~ 214 (275)
+||..+++++.++... |..++ +.+.+|.++.-++|++++.+.
T Consensus 72 IAD~dlA~ml~Rl~~~----gd~vP-----~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 72 IADADLALMLNRLVTY----GDPVP-----ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHHHHHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCCCC-----HHHHHHHHHHHCCHHHHHHHH
Confidence 9999999999999533 54443 389999999999999998654
No 114
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.2e-07 Score=63.50 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=55.4
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC--CchHHH-hcCCCCCcccEEEeCCeeeechHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN--KSDLLL-KYNPVHKKIPVLVHGGKPVCESMIILEY 72 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~--~~~~~~-~~~P~~g~vP~L~~~g~~l~eS~aIl~y 72 (275)
++++|+.++||||.++.-+|..+|++|+++.++... ...+.. ..++. .++|++.+||..+......-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999998765 443444 44477 7999999999877655444444
No 115
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.53 E-value=4.9e-07 Score=62.96 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=59.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
+++|+.++||+|.+++-+|+..|++|+.+.++.. ...+++.+.... ..+|++..+|..+.+...+..+-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 5899999999999999999999999999999755 234556666666 6899999999999988888777554
No 116
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.52 E-value=1.7e-07 Score=72.50 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhh-hcccccCCCCCCccHHHHHHHhcc
Q 023929 129 GQELENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGD-VVGVKLFDSHKFPSLHTWFENFKQ 205 (275)
Q Consensus 129 ~~~~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~-~~~~~~~~~~~~P~l~~w~~~~~~ 205 (275)
....++..++..+.++.+ ++.|++++|++|++||.+|+.+++.+..+....- ...... ..+.+|+|.+|++||.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l-~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~-~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLL-SQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQN-HLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHH-HHHHCcHHHHHHHHHHH
Confidence 335677788889999999 9999999999999999999999998877742100 000001 03489999999999975
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.49 E-value=4.7e-07 Score=61.94 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=45.9
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~ 61 (275)
+++|+.++||+|++++-+|+..||+|+.+.++-.....+..+..+. ..+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999998755333333344465 68999999664
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.49 E-value=1.1e-06 Score=62.24 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=61.5
Q ss_pred cceEEEecCCChHHHHHHHHHHH-----cCCCceEEEcCCCC-CchHHHhcCCC-CCcccEEEeCCeeeechHHHHHHHH
Q 023929 2 AEVKLHGRLLSPFVCRVIWALKL-----KGVPYEFVAEDLSN-KSDLLLKYNPV-HKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 2 s~~~Ly~~~~sp~~~~vrl~L~~-----~gi~y~~~~v~~~~-~~~~~~~~~P~-~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
+++++|+.++||+|.+++-+|+. .|++|+.+.++-.. ..+++...... ...+|.+..||..+.+...|.+++.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 14999999999999999999999 89999999887431 12344433221 0479999999999999999999998
Q ss_pred HhCC
Q 023929 75 EMWP 78 (275)
Q Consensus 75 ~~~~ 78 (275)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 119
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.42 E-value=5.2e-07 Score=59.33 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=50.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l 63 (275)
+++|+.++||+|.+++-+|+..|++|+.+.++.. ...+++.+.... .++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999876 445566666565 7999999998754
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.41 E-value=9.6e-07 Score=60.82 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=53.9
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcC-CCCCcccEEEe-CCeeeechH--HHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYN-PVHKKIPVLVH-GGKPVCESM--IILEYI 73 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~-P~~g~vP~L~~-~g~~l~eS~--aIl~yL 73 (275)
+++||+.++||+|++++.+|+..|++|+.+.++-.. ..+.+.+.+ +. ..+|+++. +|..+.++. .+..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 489999999999999999999999999988876543 334556666 76 79999975 677776543 444444
No 121
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.33 E-value=3.6e-06 Score=59.66 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=58.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcC-----CCceEEEcCCCC-CchHHHhcCCC-CCcccEEEeCCeeeechHHHHHHHHHh
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKG-----VPYEFVAEDLSN-KSDLLLKYNPV-HKKIPVLVHGGKPVCESMIILEYIEEM 76 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~g-----i~y~~~~v~~~~-~~~~~~~~~P~-~g~vP~L~~~g~~l~eS~aIl~yL~~~ 76 (275)
+++|+.++||+|.+++-+|+..+ ++|+.+.++... ..+++...... ...||++..||..+.++..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999984 668877776332 12334433321 048999999999999999999999887
Q ss_pred CC
Q 023929 77 WP 78 (275)
Q Consensus 77 ~~ 78 (275)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.32 E-value=5e-06 Score=58.05 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=60.6
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCc----hHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKS----DLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~----~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
++++|+.++||+|.+++-+|+..+++|+.+.++..+.. ..+.+.+.. .++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988766432 234466665 6899999999999999999988764
No 123
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.31 E-value=4.1e-06 Score=61.02 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=57.8
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCch----HHHhcCCCCCcccEEEeCCeeeechHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSD----LLLKYNPVHKKIPVLVHGGKPVCESMIILEYI 73 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~----~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL 73 (275)
++++|+.++||+|.+++-+|+..|++|+.+.++-..... .+.+.+.. .++|.+..+|..+.+...+....
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHHH
Confidence 699999999999999999999999999999997553222 34455666 69999999999998888777643
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.23 E-value=1e-05 Score=59.89 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=57.3
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCC---CceEEEcCCCC----CchHHHhcCCCCCcccEEEeCCeeeechHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGV---PYEFVAEDLSN----KSDLLLKYNPVHKKIPVLVHGGKPVCESMIILE 71 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi---~y~~~~v~~~~----~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~ 71 (275)
++++|+.++||||.+++-+|+..|+ +|+.+.++-.. ...++.+.+.. .+||.+.++|..+.+...+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 6899999999999999999999999 79898887432 23566677776 699999999999988877766
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.09 E-value=2.1e-05 Score=57.07 Aligned_cols=71 Identities=27% Similarity=0.293 Sum_probs=55.9
Q ss_pred ceEEEec-----CCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 3 EVKLHGR-----LLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++.+|.- ++||||.+++-+|+..||+|+++.++-. ....++.+.+.. .++|.+..||..+.+...+.....
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHHH
Confidence 5788854 8999999999999999999999888533 223345566666 699999999999988888776543
No 126
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.05 E-value=2.9e-05 Score=55.50 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=56.2
Q ss_pred ceEEEec-----CCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHH
Q 023929 3 EVKLHGR-----LLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYI 73 (275)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL 73 (275)
++++|.- ++||+|.+++-+|+..|++|+.+.++-. ....++.+.+.. .++|.+..||..+.+...+....
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 5778854 6999999999999999999999998644 223445566666 68999999999999888887754
No 127
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.05 E-value=3.8e-05 Score=53.70 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=58.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCC--ceEEEcCCCCCch----HHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVP--YEFVAEDLSNKSD----LLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~--y~~~~v~~~~~~~----~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
+++|+-++||+|.+++-+|+..+++ |+...++...... .+.+.... .++|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887653322 24555565 6899999999999999988887654
No 128
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.79 E-value=9.8e-05 Score=67.57 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=55.9
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHH-h--------cCCCCCcccEEEeCCeeeechHHHHH
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLL-K--------YNPVHKKIPVLVHGGKPVCESMIILE 71 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~-~--------~~P~~g~vP~L~~~g~~l~eS~aIl~ 71 (275)
|.++++|+.++||+|.++.-+|...||+|+.+.++-.....++. . .... .+||.+..+|..+.+-.....
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 78899999999999999999999999999999997433222322 1 1344 589999999999888777765
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.68 E-value=0.00025 Score=55.29 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=57.2
Q ss_pred ceEEEecC------CChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCC----CCCcccEEEeCCeeeechHHHHH
Q 023929 3 EVKLHGRL------LSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNP----VHKKIPVLVHGGKPVCESMIILE 71 (275)
Q Consensus 3 ~~~Ly~~~------~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P----~~g~vP~L~~~g~~l~eS~aIl~ 71 (275)
+++||..+ ++|+|.+++-+|+..||+|+++.+++. ...+++.+... . .++|.+..+|..+.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 47899998 899999999999999999999999865 23445544422 2 589999999999999888877
Q ss_pred HHH
Q 023929 72 YIE 74 (275)
Q Consensus 72 yL~ 74 (275)
.-+
T Consensus 80 L~e 82 (147)
T cd03031 80 LNE 82 (147)
T ss_pred HHH
Confidence 543
No 130
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.62 E-value=0.00029 Score=47.97 Aligned_cols=55 Identities=31% Similarity=0.524 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHcCCC---ceEEEcCCCCCchHHHhcCCCCCcccEEEe-CCeeeechHHHHHHH
Q 023929 11 LSPFVCRVIWALKLKGVP---YEFVAEDLSNKSDLLLKYNPVHKKIPVLVH-GGKPVCESMIILEYI 73 (275)
Q Consensus 11 ~sp~~~~vrl~L~~~gi~---y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~-~g~~l~eS~aIl~yL 73 (275)
.+|-|.++.++|+..+.+ |+.+..+-. .++|. |++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-------~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-------WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-------CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 678999999999999999 777776422 26788 89999999 999999999999998
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.48 E-value=0.00069 Score=50.51 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=56.0
Q ss_pred ceEEEec-----CCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 3 EVKLHGR-----LLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++.+|.- |+||||.++.-+|...|++|..+.++-. .....+.+.+.. .++|-+..+|..+.+...+.....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHHH
Confidence 5677754 5999999999999999999998887543 223445566666 699999999999999888777543
No 132
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.06 E-value=0.0023 Score=42.53 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=42.6
Q ss_pred ceEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeee
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~ 64 (275)
++++|+.++||+|.++.-+|++. ++++..+.++ ..+++.+.... ..+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~---~~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA---EFPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc---cCHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999999998875 5666665553 22445555444 57999999887654
No 133
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0042 Score=45.43 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=58.8
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchH----HHhcCCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDL----LLKYNPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~----~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
++.+|.-.+||+|.+++-+|...|+++..+.+|-.....+ +.+..-. .++|.+..+|..+.....+..+-.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHHH
Confidence 6889999999999999999999999999999987644333 3455555 689999999999998888877644
No 134
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0024 Score=42.93 Aligned_cols=63 Identities=30% Similarity=0.330 Sum_probs=48.3
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-----------CCchHHHhc--CCCCCcccEEEe-CCeeee
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-----------NKSDLLLKY--NPVHKKIPVLVH-GGKPVC 64 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-----------~~~~~~~~~--~P~~g~vP~L~~-~g~~l~ 64 (275)
|++++||+...||-|-...-.|+..+++|+.+.+.-. +..++|-+. |.. --+|+|.. ||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 8889999999999999999999999999999987533 344555433 333 35899985 666654
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=96.95 E-value=0.0043 Score=51.19 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=54.5
Q ss_pred ceEEEec-----CCChHHHHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEeCCeeeechHHHHHHH
Q 023929 3 EVKLHGR-----LLSPFVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYI 73 (275)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL 73 (275)
++.||.- |.||+|+++.-+|+..||+|++..++-.. ....+.+.+.. .++|.+..+|..+.+...+.+..
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 5777743 68999999999999999999998886442 23445556665 68999999999998887777643
No 136
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.87 E-value=0.0048 Score=47.10 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchh
Q 023929 132 LENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEI 209 (275)
Q Consensus 132 ~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 209 (275)
.++..++++..|..+ |.++......-| ++|+-|+.+++.|+.+-. ..|..++ |++.+|+++|.+...+
T Consensus 57 t~~~i~~l~~~L~~L-e~ll~~~~~~n~-~LS~dDi~lFp~LR~Lti---vkgi~~P-----~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEEL-EPLLASPNAVNG-ELSIDDIILFPILRSLTI---VKGIQWP-----PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHH-HHH-SCTTBTTS-S--HHHHHHHHHHHHHCT---CTTS--------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHH-HHHhccccccCC-CCCHHHHHHHHHHhhhhh---ccCCcCC-----HHHHHHHHHHHHHcCC
Confidence 356688888889999 888875545555 899999999999998843 2243222 4999999999986554
No 137
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.61 E-value=0.013 Score=44.40 Aligned_cols=67 Identities=12% Similarity=0.241 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchh
Q 023929 133 ENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEI 209 (275)
Q Consensus 133 ~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 209 (275)
.+..++++..|..+ +.++..... .++.+|+-|+.+++.|..+-... |..++ |++.+|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l-~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vk---gi~~P-----~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEEL-DPLILSSEA-VNGQLSTDDIILFPILRNLTLVK---GLVFP-----PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHH-HHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhc---CCCCC-----HHHHHHHHHHHHHhCC
Confidence 46677888888888 888854434 45679999999999999985432 43222 4899999999986554
No 138
>PRK10026 arsenate reductase; Provisional
Probab=96.58 E-value=0.0037 Score=48.31 Aligned_cols=35 Identities=6% Similarity=-0.009 Sum_probs=33.0
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
|+.+++|+.+.|.-|++++-+|++.|++|+.+.+-
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 88899999999999999999999999999998863
No 139
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.56 E-value=0.0059 Score=46.77 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=30.7
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.||+|++++-+|+..||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999999999999999999999999999875
No 140
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.54 E-value=0.0055 Score=45.49 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=30.7
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDL 36 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~ 36 (275)
++||+.+.||+|++++-+|+..|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998854
No 141
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.51 E-value=0.0065 Score=44.52 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=30.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDL 36 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~ 36 (275)
+++|+.+.||+|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999998853
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.47 E-value=0.0079 Score=44.93 Aligned_cols=32 Identities=16% Similarity=0.005 Sum_probs=30.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.|+.|++++-+|+..|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 89999999999999999999999999999884
No 143
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.27 E-value=0.013 Score=45.01 Aligned_cols=33 Identities=9% Similarity=-0.085 Sum_probs=31.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDL 36 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~ 36 (275)
+++|+.+.|+.|++++-+|+..||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 899999999999999999999999999998853
No 144
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.0018 Score=59.56 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=80.3
Q ss_pred ccEEEeCCeeeechHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhh
Q 023929 53 IPVLVHGGKPVCESMIILEYIEEMWP-QNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQE 131 (275)
Q Consensus 53 vP~L~~~g~~l~eS~aIl~yL~~~~~-~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (275)
++.+.-+|..+.++..+..|.+..-. .+.+++.+ .++.+++.|+++.... .
T Consensus 38 ~~~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~-~-------------------------- 89 (712)
T KOG1147|consen 38 VDKQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF-S-------------------------- 89 (712)
T ss_pred hhhhccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc-c--------------------------
Confidence 34333367777777778887764433 23488887 7999999999988652 1
Q ss_pred HHHHHHHHHHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhh
Q 023929 132 LENAKKEILEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEE 211 (275)
Q Consensus 132 ~~~~~~~l~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~ 211 (275)
...+...+..+ +..|.-..||+|.++|+||++++..+..-....+. +-..+.+-++.||++-....++...
T Consensus 90 ----~~~~s~~~~~l-d~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~----lk~~k~~~~v~Rw~~~~~~~~a~~~ 160 (712)
T KOG1147|consen 90 ----FDEISSSLSEL-DKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQ----LKAKKDYQNVERWYDLPEFQEAHNK 160 (712)
T ss_pred ----hHHHHHHHHHH-HhhhhHHHHhhccchhHHHHHHHHHHhcccchHHH----HHhhCCchhhhhhcCcHhHHHHHHH
Confidence 12244567777 78888788999999999999999988763211111 0002345589999884444443333
Q ss_pred c
Q 023929 212 N 212 (275)
Q Consensus 212 ~ 212 (275)
+
T Consensus 161 v 161 (712)
T KOG1147|consen 161 V 161 (712)
T ss_pred H
Confidence 3
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.22 E-value=0.013 Score=44.92 Aligned_cols=33 Identities=12% Similarity=-0.133 Sum_probs=31.0
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDL 36 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~ 36 (275)
+++|+.+.|+.|+++.-+|+.+|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 899999999999999999999999999998753
No 146
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.16 E-value=0.031 Score=38.34 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=42.1
Q ss_pred CcceEEEecCCChHHHHH----HHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeee
Q 023929 1 MAEVKLHGRLLSPFVCRV----IWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~v----rl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~ 64 (275)
|. +.+|. ++||.|..+ .-++++.|++++.+.++- .++..+.+- ..+|++..||..+.
T Consensus 1 m~-i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 1 MK-IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred CE-EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 44 77877 999999998 668888899998888871 233333333 58999999886654
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.00 E-value=0.011 Score=44.36 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=30.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.||+|++++-+|+..|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999999875
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.80 E-value=0.024 Score=41.59 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=30.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.|+.|++++-+|++.|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999874
No 149
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.031 Score=41.86 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=30.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.|.|.-|++++-+|+..||+|+.+.+.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 99999999999999999999999999988764
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.64 E-value=0.033 Score=41.48 Aligned_cols=32 Identities=13% Similarity=-0.111 Sum_probs=30.3
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
++||+.|.|+.|++++-+|++.|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999999874
No 151
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.64 E-value=0.052 Score=37.69 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=39.3
Q ss_pred ceEEEecCCChHHHHHHHHHHHcC--CCceEEEcCCCCCchHHHhcCCCCCcccEEEeCC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKG--VPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGG 60 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~g--i~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g 60 (275)
+++||+-++|+.|..+.-.|+... .+++...+|.... +++....- -.+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-PELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-HHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-HHHHHHhc--CCCCEEEEcC
Confidence 489999999999999999999754 4455666665543 44444444 3899999877
No 152
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.53 E-value=0.11 Score=37.04 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=50.6
Q ss_pred eEEEecCCCh------HHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcC----CCCCcccEEEeCCeeeechHHHHHH
Q 023929 4 VKLHGRLLSP------FVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYN----PVHKKIPVLVHGGKPVCESMIILEY 72 (275)
Q Consensus 4 ~~Ly~~~~sp------~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~----P~~g~vP~L~~~g~~l~eS~aIl~y 72 (275)
+++|+...++ .|+.++.+|+.+||+|+++.++.. ....++.+.. +. ..+|-+..+|..+.+...+...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHHH
Confidence 6778666553 568899999999999999999875 2234444442 33 5899999999999888776663
No 153
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.19 E-value=0.06 Score=40.89 Aligned_cols=33 Identities=18% Similarity=-0.043 Sum_probs=30.8
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
.+++|+.+.|.-|++++-+|++.||+|+.+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999998864
No 154
>PRK10853 putative reductase; Provisional
Probab=94.99 E-value=0.066 Score=40.15 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=30.3
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.|.-|++++-+|++.|++|+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999988864
No 155
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.01 E-value=0.28 Score=33.53 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=39.3
Q ss_pred ceEEEecCCChHHHHHHHHHHH----cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCe
Q 023929 3 EVKLHGRLLSPFVCRVIWALKL----KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGK 61 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~----~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~ 61 (275)
.+++|+.++||+|..+.-.|+. .+..+....++..+ .++..+.... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME-NPQKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc-CHHHHHHcCC-ccCCEEEECCE
Confidence 3789999999999988877764 35445555666543 3344444454 57999998775
No 156
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.97 E-value=0.38 Score=32.78 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=38.2
Q ss_pred eEEEecCCChHHHHHHHH----HHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeech
Q 023929 4 VKLHGRLLSPFVCRVIWA----LKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCES 66 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~----L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS 66 (275)
+++ ..++||+|.++.-+ ++..|++++...+ ...++. ..... ..+|++..||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv-~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGV-MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT--SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCC-CCCCEEEECCEEEEEe
Confidence 777 56679999976664 4456877766665 334444 44444 5899999999775543
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.94 E-value=0.16 Score=31.76 Aligned_cols=54 Identities=30% Similarity=0.248 Sum_probs=37.9
Q ss_pred eEEEecCCChHHHHHHHHHH-----HcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWALK-----LKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~-----~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~ 58 (275)
+.+|+..+|++|++++..+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 35778889999999999999 45666666666544332222345666 79999986
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.94 E-value=0.22 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=40.6
Q ss_pred ceEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeee
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~ 64 (275)
++.+|..++||+|..+.-+++.. ++.+..+.++ + .++..+...- ..+|.++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~-~~e~a~~~~V-~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--L-FQDEVEERGI-MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--h-CHHHHHHcCC-ccCCEEEECCEEEE
Confidence 57889999999999988877765 5666655553 2 3444444444 57999999886554
No 159
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=93.85 E-value=0.16 Score=37.80 Aligned_cols=32 Identities=19% Similarity=0.016 Sum_probs=29.7
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998764
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.85 E-value=0.099 Score=38.78 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=29.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
+++|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998763
No 161
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.35 Score=34.72 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=51.2
Q ss_pred ceEEE-----ecCCChHHHHHHHHHHHcC-CCceEEEcCCCCCchHHH----hcCCCCCcccEEEeCCeeeechHHHHHH
Q 023929 3 EVKLH-----GRLLSPFVCRVIWALKLKG-VPYEFVAEDLSNKSDLLL----KYNPVHKKIPVLVHGGKPVCESMIILEY 72 (275)
Q Consensus 3 ~~~Ly-----~~~~sp~~~~vrl~L~~~g-i~y~~~~v~~~~~~~~~~----~~~P~~g~vP~L~~~g~~l~eS~aIl~y 72 (275)
++.|| .+|-|+|+.++--+|...| ++|..+.+-- +++++ +.+-+ -++|-|-.+|..+.+|.-|.+.
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~---d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ---DPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc---CHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHH
Confidence 46666 5678999999999999999 6777776632 23333 33334 5899999999999999887776
Q ss_pred HHH
Q 023929 73 IEE 75 (275)
Q Consensus 73 L~~ 75 (275)
..+
T Consensus 92 ~q~ 94 (105)
T COG0278 92 YQS 94 (105)
T ss_pred HHc
Confidence 543
No 162
>PHA02125 thioredoxin-like protein
Probab=93.43 E-value=0.35 Score=32.81 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=38.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~ 61 (275)
+++|+.++|+.|+.+.-.|+. +++....++... ..++.+...- ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDE-GVELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCC-CHHHHHHcCC-ceeCeEE-CCE
Confidence 789999999999998888864 556666665433 4556665555 6899998 443
No 163
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.22 E-value=1.4 Score=31.94 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=43.1
Q ss_pred CcceEEEecCCCh------HHHHHHHHHHHcCCCceEEEcCCCCC-chHHHhcC---------CCCCcccEEEeCCeeee
Q 023929 1 MAEVKLHGRLLSP------FVCRVIWALKLKGVPYEFVAEDLSNK-SDLLLKYN---------PVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 1 Ms~~~Ly~~~~sp------~~~~vrl~L~~~gi~y~~~~v~~~~~-~~~~~~~~---------P~~g~vP~L~~~g~~l~ 64 (275)
|. +++|....++ ..+++..+|+.++|+|+.+.+..... ..+.++.. +. .-.|-+..|+.-+.
T Consensus 1 m~-I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 1 MV-IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCG 78 (99)
T ss_dssp -S-EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEE
T ss_pred CE-EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEe
Confidence 55 8888766554 45789999999999999999987632 23333332 22 23478888888887
Q ss_pred chHHHHHHH
Q 023929 65 ESMIILEYI 73 (275)
Q Consensus 65 eS~aIl~yL 73 (275)
+-..+-+.-
T Consensus 79 dye~f~ea~ 87 (99)
T PF04908_consen 79 DYEDFEEAN 87 (99)
T ss_dssp EHHHHHHHH
T ss_pred eHHHHHHHH
Confidence 766665543
No 164
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=91.21 E-value=0.79 Score=33.67 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHc---CCCceEEEcCCCCCchHH-HhcCCCCCcccEEEe-CCe-------------eeechHHHHHH
Q 023929 11 LSPFVCRVIWALKLK---GVPYEFVAEDLSNKSDLL-LKYNPVHKKIPVLVH-GGK-------------PVCESMIILEY 72 (275)
Q Consensus 11 ~sp~~~~vrl~L~~~---gi~y~~~~v~~~~~~~~~-~~~~P~~g~vP~L~~-~g~-------------~l~eS~aIl~y 72 (275)
.||.|..+.=+|+.. .-..+.+.++........ ..++..+..+|+|+. +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 588888888887763 223556677665333333 344443356999995 332 68999999999
Q ss_pred HHHhCC
Q 023929 73 IEEMWP 78 (275)
Q Consensus 73 L~~~~~ 78 (275)
|+++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 165
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=85.79 E-value=1.1 Score=32.93 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=23.2
Q ss_pred EecCCChHHHHHHHHHHHcCCCceEEEcC
Q 023929 7 HGRLLSPFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 7 y~~~~sp~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
|+.+.|.-|++++-+|++.|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999998874
No 166
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=81.59 E-value=2.8 Score=33.45 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCcCCCC---CcccCCC-CChhHhhhHhHHHHH
Q 023929 138 EILEILQTLEEHGLRER---NFFNGDN-IGLVDIAFGSMLYWM 176 (275)
Q Consensus 138 ~l~~~l~~l~e~~L~~~---~fl~G~~-~T~ADi~l~~~l~~~ 176 (275)
...+.+..+ +..|++. +|+.|++ +|-+|+.+++.+.-+
T Consensus 112 ~a~~~l~~L-~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLL-EELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHH-HHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 456678888 8888877 8999887 999999999988877
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.34 E-value=9.3 Score=31.80 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=52.8
Q ss_pred ceEEE-----ecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHH
Q 023929 3 EVKLH-----GRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEE 75 (275)
Q Consensus 3 ~~~Ly-----~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~ 75 (275)
+++|| ..|-|++++++--+|...||+|....+--. .-...+.+.+-+ -+.|-|-.+|.-+.+..-|...+..
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhhc
Confidence 45555 467889999999999999999998888543 112223344445 5899999999999888777766543
No 168
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=77.27 E-value=1.7 Score=32.46 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=13.7
Q ss_pred cccEEEe--CCeeeechHHHHHHHHHhCC
Q 023929 52 KIPVLVH--GGKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 52 ~vP~L~~--~g~~l~eS~aIl~yL~~~~~ 78 (275)
.-|.|.+ +|..|+|+.||+||+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4588865 78999999999999998764
No 169
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=75.93 E-value=16 Score=27.26 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred eEEEecCCChHHHHHHHHHH----HcCCCceEEEcCCCC-----Cc---hHHHhcCC----CCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALK----LKGVPYEFVAEDLSN-----KS---DLLLKYNP----VHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~----~~gi~y~~~~v~~~~-----~~---~~~~~~~P----~~g~vP~L~~--~g~~l 63 (275)
+..++.++||+|+.+.=.|+ ..++++-.+.++-.. .. .++.+... . ..+|+++. +|..+
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i-~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF-MGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC-CCCCEEEEEeCCeEE
Confidence 45569999999999555444 345666555555221 11 23444322 2 34999985 77443
No 170
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=71.15 E-value=25 Score=24.64 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=34.6
Q ss_pred eEEEecCCChHHHHHHHHHHH----cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKL----KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~----~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..|+.++|+.|+...-.++. .+-.+....++... .+++.+..-. ..+|++.. +|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 456778999999988776655 12124444555433 3444444333 57998874 66544
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.42 E-value=12 Score=35.80 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=39.8
Q ss_pred ceEEEecCCChHHHHHHH----HHHHc-CCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeee
Q 023929 3 EVKLHGRLLSPFVCRVIW----ALKLK-GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl----~L~~~-gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~ 64 (275)
.+++|..++||+|-.+.- ++.+. +|..+.+.+... +++.+...- ..||.++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v-~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGI-MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCc-eecCEEEECCEEEE
Confidence 478888999999977554 44444 688777776432 455544444 58999999886544
No 172
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=68.79 E-value=31 Score=22.90 Aligned_cols=54 Identities=20% Similarity=0.080 Sum_probs=35.8
Q ss_pred eEEEecCCChHHHHHHHHHHH-----cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKL-----KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~-----~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~ 61 (275)
+..++.++|+.|+...-.++. .++.+-.+..+- ..++.+.... ..+|++.. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE---NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC---ChhHHHhcCc-ccccEEEEEECCE
Confidence 566788899999998888877 566555554432 3444444444 57998774 565
No 173
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=67.83 E-value=18 Score=25.19 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=42.8
Q ss_pred eEEEecCCChHHHHHHHHHHHc----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee------echHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV------CESMIILE 71 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l------~eS~aIl~ 71 (275)
+..++.++|+.|+...=.++.. +-++....++.. ..+.+.+..-. ..+|.+.. +|... .+...|..
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD-ENKELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT-TSHHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh-ccchhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 5567889999999987555442 214444445443 33555555555 68999984 66443 24556666
Q ss_pred HHHH
Q 023929 72 YIEE 75 (275)
Q Consensus 72 yL~~ 75 (275)
+|.+
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 174
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=66.45 E-value=25 Score=27.06 Aligned_cols=75 Identities=15% Similarity=-0.061 Sum_probs=50.5
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeec---hHHHHHHHHHhC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCE---SMIILEYIEEMW 77 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~e---S~aIl~yL~~~~ 77 (275)
+++.|+.|.|+.|..---.|+.+|++...+..+....-..-..+-+..+..=+.+++|..+-. -.+|.+.|+++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 689999999999999888999999988887765331100001111111234466778876643 578999999887
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=66.12 E-value=6.1 Score=37.45 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=45.0
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCC---ceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeec----hHHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVP---YEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCE----SMIILEYIEE 75 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~---y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~e----S~aIl~yL~~ 75 (275)
.+++|..+.||||-.+.-+++..-+. .+...++- ...+++.+.... ..||.+..||..+.+ -..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~-~~~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG-ALFQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc-hhCHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 47899999999998877666554332 22222332 334555555554 689999998866554 2345666654
Q ss_pred h
Q 023929 76 M 76 (275)
Q Consensus 76 ~ 76 (275)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 176
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=65.92 E-value=11 Score=27.60 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=33.6
Q ss_pred eEEE-ecCCChHHHHHHHHHHHcCCCc---eEEEcCCCCCchHHHhcCCCCCcccEEEe
Q 023929 4 VKLH-GRLLSPFVCRVIWALKLKGVPY---EFVAEDLSNKSDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly-~~~~sp~~~~vrl~L~~~gi~y---~~~~v~~~~~~~~~~~~~P~~g~vP~L~~ 58 (275)
++++ +-+|||+|+.++-+++...-.+ +...++.. ..+++...... ..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGV-ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCC-CcCCEEEE
Confidence 4455 5679999998887777543222 23333332 34566666665 68999985
No 177
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.73 E-value=27 Score=31.59 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=29.1
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHhCcCC-CCCcc-cCCCCChh
Q 023929 122 KLFRSITGQELENAKKEILEILQTLEEHGLR-ERNFF-NGDNIGLV 165 (275)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~-~~~fl-~G~~~T~A 165 (275)
+.....+++..+..+++..+..+.+ +.+.+ +|.++ .|-++|+=
T Consensus 219 ~~~~~~~~~~~~~~~~Ra~~fa~~~-~~~f~~dG~~~~~GRSltYR 263 (361)
T PF10022_consen 219 RLMGDEDPERAARYRQRAQRFAEDY-ERMFSPDGAAPPFGRSLTYR 263 (361)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHH-HHHcCCCCCcCCccccHHHH
Confidence 3333334555677788888888888 88775 55566 68888763
No 178
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=65.11 E-value=6.1 Score=37.41 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=44.0
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCC---ceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeech----HHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVP---YEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCES----MIILEYIEE 75 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~---y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS----~aIl~yL~~ 75 (275)
.+++|..+.||||-.+.-++...-+. .+...++- ...+++...... ..||.+..||..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~-~~~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG-ALFQDEVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc-hhCHHHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 47899999999998877776654333 22222332 233455555554 5899999988666542 334455544
Q ss_pred h
Q 023929 76 M 76 (275)
Q Consensus 76 ~ 76 (275)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 179
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=63.62 E-value=45 Score=24.36 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=36.9
Q ss_pred eEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPVC 64 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l~ 64 (275)
+..++.++|+.|+.+.-.++.. ++ ....++.. ..+++.+...- ..+|++.. +|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~-~~~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAE-KAPFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEcc-cCHHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 4556789999999887766552 34 33444433 34455555555 68999985 776654
No 180
>COG4289 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.42 E-value=37 Score=30.49 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=84.9
Q ss_pred chHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchh-hHHHHHHHHHHHH
Q 023929 65 ESMIILEYIEEMWPQNPLMPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQ-ELENAKKEILEIL 143 (275)
Q Consensus 65 eS~aIl~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l 143 (275)
=|.+|++-|++-|-+.+.+.+.+ .-+.+.+.+|....+.- .+.... +++ .....+++..+..
T Consensus 189 ltd~~lk~l~~fyigdGwyrDG~--~~r~DyYnaf~~h~y~l------------~~lrli---~pd~~~~r~r~ra~~fa 251 (458)
T COG4289 189 LTDDKLKELDEFYIGDGWYRDGN--QRRYDYYNAFAMHFYGL------------IYLRLI---NPDYDAKRYRERAAEFA 251 (458)
T ss_pred hHHHHHHHhhheeecccccccCC--ccchhhhhhhhhhhhhh------------hhhhhc---CcHHHHHHHHHHHHHHH
Confidence 46678888888887777887774 34556666666554321 111111 222 4555666777777
Q ss_pred HHHHhCcCC-CCCcc-cCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCc-cHHHHHHHhcccchhhhcCCCchhHH
Q 023929 144 QTLEEHGLR-ERNFF-NGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFP-SLHTWFENFKQVPEIEENFPNRDDIW 220 (275)
Q Consensus 144 ~~l~e~~L~-~~~fl-~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P-~l~~w~~~~~~~p~~~~~l~~~~~~~ 220 (275)
..+ +.+.. ++.++ .|.+.|+== ++...+..+... ..+.++..+-- .+.+-...+.+.|.
T Consensus 252 ~~~-r~~i~pdG~~p~fGRS~tYR~-Av~~~laala~~----~~~p~~~geik~al~a~LR~~~e~p~------------ 313 (458)
T COG4289 252 ADF-RYWITPDGTIPFFGRSATYRF-AVSGFLAALAFA----DTEPLPWGEIKGALLAHLRWWAEKPI------------ 313 (458)
T ss_pred HHH-HHHcCCCCCccccchhhHHHH-HHHHHHHHHHhc----ccCCccHHHHHHHHHHHHHHHhcCCc------------
Confidence 777 77664 44444 577777632 223333333211 21111111100 12222222233331
Q ss_pred HHHhhhhcCCCCccccccceeeehhHHHHHHHHHHHHHHHhhh
Q 023929 221 FISNIAVNSGWPLIECSSIKFVCVSHFVLVLFMYWCLKMFFSL 263 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
....|++..--.+-+.-++.++.----+|||+|.|+-|
T Consensus 314 -----adr~G~lsiG~~~~q~~l~enY~s~gS~ywa~kaflpL 351 (458)
T COG4289 314 -----ADRDGVLSIGYFYPQLRLSENYNSAGSPYWAFKAFLPL 351 (458)
T ss_pred -----ccccCcceeecccCchhhhhhcCCCCchHHHHHHhhhc
Confidence 22235555555666666666766666789999999766
No 181
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=61.35 E-value=8 Score=31.80 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhhhh
Q 023929 245 SHFVLVLFMYWCLKMFFSLCFCYCL 269 (275)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (275)
|-++++.|+.||.-..+.|||+||.
T Consensus 34 sc~~iG~fLlWyfviilvLm~~~ra 58 (243)
T PF15468_consen 34 SCGAIGSFLLWYFVIILVLMFFSRA 58 (243)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHH
Confidence 5678999999999988889999875
No 182
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=60.47 E-value=3.3 Score=34.56 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=46.1
Q ss_pred HHHHHHHHhCcCCCCCcccCCCCChhHhhhHhHHHHHHHhhhhcccccCCCCCCccHHHHHHHhcccchhhh
Q 023929 140 LEILQTLEEHGLRERNFFNGDNIGLVDIAFGSMLYWMQVIGDVVGVKLFDSHKFPSLHTWFENFKQVPEIEE 211 (275)
Q Consensus 140 ~~~l~~l~e~~L~~~~fl~G~~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~ 211 (275)
.+.++.+ +..|.+++|.-|.+++-+|+.++..+..- .....+++..+|+.++.+.-...+
T Consensus 10 ~~glk~l-~~sLA~ks~~~g~~~s~edv~vf~al~~e-----------p~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 10 PAGLKKL-NKSLAEKSYIEGYQLSKEDVVVFAALGVE-----------PQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhhhhhh-hHhhhcccCCCCCCcccccceeehhcccC-----------cchhhhhHHHHHHHHHHHHHHHHh
Confidence 4567888 99999999999999999999987654322 114477888999988888665553
No 183
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.47 E-value=16 Score=31.36 Aligned_cols=60 Identities=12% Similarity=0.012 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCceEEEcCCCC-CchHHHh---c-CCCCCcccEEEeCCeeeechHHHHHHHH
Q 023929 14 FVCRVIWALKLKGVPYEFVAEDLSN-KSDLLLK---Y-NPVHKKIPVLVHGGKPVCESMIILEYIE 74 (275)
Q Consensus 14 ~~~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~---~-~P~~g~vP~L~~~g~~l~eS~aIl~yL~ 74 (275)
.|..||.+|+-.+|.|+++.+.+.. ..+++.. . .-. -.+|.+..+|.-|.....|.+--+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~LnE 213 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVRLNE 213 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhhhhh
Confidence 5789999999999999999999872 2334332 2 122 479988889999988888776533
No 184
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=57.11 E-value=22 Score=29.28 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=35.1
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCC---CceEEEcCCCCCchHHHhcCCCCCcccEEEeC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGV---PYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHG 59 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi---~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~ 59 (275)
.+++|+.++||+|..+.-+++..-- ..+...++.. ..++..+...- ..+|++..+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~-~~~~~~~~~~V-~~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN-ENPDLAEKYGV-MSVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC-CCHHHHHHhCC-ccCCEEEEe
Confidence 3667899999999998877775421 2223345543 34455555454 579999864
No 185
>PTZ00051 thioredoxin; Provisional
Probab=51.37 E-value=78 Score=21.80 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=33.3
Q ss_pred eEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..++.++|+.|+...-.++.. ++.+ ..++.. ....+.+.... ..+|++.. +|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~vd~~-~~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVF--VKVDVD-ELSEVAEKENI-TSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEE--EEEECc-chHHHHHHCCC-ceeeEEEEEeCCeEE
Confidence 4466889999999876655542 3333 333332 33445555454 57998874 56443
No 186
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=51.03 E-value=60 Score=22.87 Aligned_cols=53 Identities=15% Similarity=-0.045 Sum_probs=31.1
Q ss_pred eEEEecCCChHHHHHHHHH--------HHcCCCceEEEcCCCCC---chHHHhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWAL--------KLKGVPYEFVAEDLSNK---SDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L--------~~~gi~y~~~~v~~~~~---~~~~~~~~P~~g~vP~L~~ 58 (275)
+..++.++|++|++..-.+ ...+ .+....++.... ..++.+.... ..+|++..
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~~ 78 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYLF 78 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEEE
Confidence 4567889999999876332 1122 344445554321 3455555554 57998873
No 187
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=45.96 E-value=92 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.9
Q ss_pred eEEEecCCChHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVI 19 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vr 19 (275)
+..++.++||+|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4566889999999865
No 188
>PHA02278 thioredoxin-like protein
Probab=45.44 E-value=1.1e+02 Score=21.92 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=33.0
Q ss_pred eEEEecCCChHHHHHHHHHHHc----CCCceEEEcCCCCC---chHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK----GVPYEFVAEDLSNK---SDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~----gi~y~~~~v~~~~~---~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+.-++-+||+.|+...=.++.. +.......++.... .+++.+..-- ..+|++.. ||..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 3445788999999766544332 12222334443321 2445444444 58999985 77654
No 189
>PHA02655 hypothetical protein; Provisional
Probab=45.43 E-value=22 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=18.8
Q ss_pred eeeehhHHHHHHHHHHHHHHHhhhHhhh
Q 023929 240 KFVCVSHFVLVLFMYWCLKMFFSLCFCY 267 (275)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (275)
+...-||+-++-|++ ..|+|.||.-
T Consensus 21 rindwshyfiitflv---slfisicfii 45 (94)
T PHA02655 21 RINDWSHYFIITFLV---SLFISICFII 45 (94)
T ss_pred HhccchhhhHHHHHH---HHHHHhHhee
Confidence 344568999988876 5689999864
No 190
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=44.34 E-value=1e+02 Score=21.10 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=34.7
Q ss_pred eEEEecCCChHHHHHHHHHHHc----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..++-++|+.|++..-.|+.. +-.+....++.....+-..+.+. ..+|++.. +|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEEE
Confidence 4566889999999987766542 33445555554433332233443 47998874 66543
No 191
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=43.60 E-value=68 Score=22.07 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=34.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCC----CceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGV----PYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKP 62 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi----~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~ 62 (275)
+..++.++|+.|+...-.++...- .+....++.. ....+.+.... ..+|++.. +|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD-AQPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc-CCHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 345578899999987666654321 2344445443 34555555454 57999884 6644
No 192
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=41.76 E-value=36 Score=24.67 Aligned_cols=57 Identities=9% Similarity=-0.012 Sum_probs=31.6
Q ss_pred eEEEecCCChHHHHHHHHHHH-----cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCee
Q 023929 4 VKLHGRLLSPFVCRVIWALKL-----KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKP 62 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~-----~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~ 62 (275)
+..++.+||+.|+...-.++. .|.......++... .+.+.+...- ..+|++.. +|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 455688999999875433322 22223334444332 3344444444 68998873 6644
No 193
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=41.73 E-value=1.1e+02 Score=20.87 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=30.9
Q ss_pred eEEEecCCChHHHHHHHHHHHc----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~ 61 (275)
+..++.++|+.|+...-.++.. +-......++... .+.+.+..-. ..+|.+.. +|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE-NPDIAAKYGI-RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC-CHHHHHHcCC-CcCCEEEEEeCCc
Confidence 3455788999999876555442 2123344444332 3344433333 57998874 554
No 194
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=41.31 E-value=68 Score=23.62 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=32.4
Q ss_pred eEEEecCCChHHHHHHHHHHH------cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe---CCeeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKL------KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH---GGKPVC 64 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~------~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~---~g~~l~ 64 (275)
+..++-+||+.|++..-.+.. .+..|..+.++-.. .+.....+..++.+|++.. +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 344578899999987555544 22344444444321 1212334444235998874 565544
No 195
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=86 Score=23.56 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=40.8
Q ss_pred ecCCChHHHH----HHHHHHHcCCCceEEEcCCCCCchHHHhcCCC-----C-CcccEEEe-C--CeeeechHHHHHHHH
Q 023929 8 GRLLSPFVCR----VIWALKLKGVPYEFVAEDLSNKSDLLLKYNPV-----H-KKIPVLVH-G--GKPVCESMIILEYIE 74 (275)
Q Consensus 8 ~~~~sp~~~~----vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~-----~-g~vP~L~~-~--g~~l~eS~aIl~yL~ 74 (275)
+-+|||.|.+ ++=+|++++-+...+.+...+++-|--..||+ - .-||+|.- + +..+.+...-...|.
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 4469999987 45566666666666666555444443333333 0 24788874 3 355666666666666
Q ss_pred Hh
Q 023929 75 EM 76 (275)
Q Consensus 75 ~~ 76 (275)
+.
T Consensus 121 e~ 122 (128)
T KOG3425|consen 121 EM 122 (128)
T ss_pred HH
Confidence 54
No 196
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=38.05 E-value=1.3e+02 Score=24.66 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=36.0
Q ss_pred ceEEEec---CCChHHHHHHHHHHHcC-----CCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCe
Q 023929 3 EVKLHGR---LLSPFVCRVIWALKLKG-----VPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGK 61 (275)
Q Consensus 3 ~~~Ly~~---~~sp~~~~vrl~L~~~g-----i~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~ 61 (275)
.+.+++. +|||.|+.+.=.+++.. +.+..+.++.. ..+++.+..-- ..+|++.. +|.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~-~~~~l~~~~~V-~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP-EDKEEAEKYGV-ERVPTTIILEEGK 88 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc-ccHHHHHHcCC-CccCEEEEEeCCe
Confidence 3667777 89999998887776652 33334444432 34555555555 68999985 553
No 197
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=37.70 E-value=30 Score=25.35 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=21.5
Q ss_pred ccEEE-eCCeeeechHHHHHHHHHhCC
Q 023929 53 IPVLV-HGGKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 53 vP~L~-~~g~~l~eS~aIl~yL~~~~~ 78 (275)
+|.+. .+|.++++|..|+++...+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 599999999999999998765
No 198
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=36.49 E-value=1.3e+02 Score=21.66 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=40.6
Q ss_pred EEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHH---hcCC---CCCcccEEEeCCe-eeechHHHHHHHHHh
Q 023929 6 LHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLL---KYNP---VHKKIPVLVHGGK-PVCESMIILEYIEEM 76 (275)
Q Consensus 6 Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~---~~~P---~~g~vP~L~~~g~-~l~eS~aIl~yL~~~ 76 (275)
|+|-..||.|....-.++..+-.-....++.. ....++. ..++ . ..+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46677899999987777777653334444432 1111211 2222 2 23333 45665 999999999886653
No 199
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=35.51 E-value=53 Score=23.01 Aligned_cols=56 Identities=11% Similarity=-0.001 Sum_probs=32.4
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCC----ceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVP----YEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~----y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~ 61 (275)
+..++.++|+.|+...-.++...-. +....++... .+.+.+...- ..+|++.. +|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD-DRMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc-cHHHHHHcCC-CccCEEEEEcCCC
Confidence 4556889999999866555443222 3334454433 3445444444 68998874 553
No 200
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=35.19 E-value=1.6e+02 Score=20.75 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=32.1
Q ss_pred eEEEecCCChHHHHHHHHHHHcC---CCceEEEcCCCCC--chHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKG---VPYEFVAEDLSNK--SDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~g---i~y~~~~v~~~~~--~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..++-+||+.|+...=.++..- -......++.... ..++.+...- ..+|++.. +|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 34457789999987655444321 1123344443322 1355554444 57998874 66544
No 201
>PRK09381 trxA thioredoxin; Provisional
Probab=34.05 E-value=1.7e+02 Score=20.63 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=32.7
Q ss_pred eEEEecCCChHHHHHHHHHHH----cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKL----KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~----~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..++.++||.|+...-.++. .+-.+....++.... +.+.+...- ..+|++.. +|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGI-RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCC-CcCCEEEEEeCCeEE
Confidence 345678899999987644433 222244444544332 334433343 58998874 66544
No 202
>PRK09266 hypothetical protein; Provisional
Probab=33.90 E-value=75 Score=27.09 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHcCCCceEEEcCCC---CCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCC
Q 023929 21 ALKLKGVPYEFVAEDLS---NKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWP 78 (275)
Q Consensus 21 ~L~~~gi~y~~~~v~~~---~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~ 78 (275)
.++..|++.++..+++. +.++.|. .|...|-+|+-..|+..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfl-tnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFA-CNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhh-hcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 45667999999998865 2233344 444337899999999888756788888877653
No 203
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=33.77 E-value=1.2e+02 Score=22.36 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=34.1
Q ss_pred EEEecCCChHHHHHHHHHHHcCCCc----eEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 5 KLHGRLLSPFVCRVIWALKLKGVPY----EFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 5 ~Ly~~~~sp~~~~vrl~L~~~gi~y----~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
.-++-+|||.|+.+.=.++..--.| ....++.. ..+++.+..-- ..+|++.. +|..+
T Consensus 19 V~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD-~~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 19 IRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID-EVPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC-CCHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 3368889999998766654432222 23344443 34556555444 57999985 77654
No 204
>PHA03075 glutaredoxin-like protein; Provisional
Probab=32.28 E-value=80 Score=23.52 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCC-eeeechHHHHHHHHHh
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGG-KPVCESMIILEYIEEM 76 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g-~~l~eS~aIl~yL~~~ 76 (275)
.+.|+|-|.|+-|+.+.-+|++..-+|+...++.-..- . . .|++=+|..|+ ..+ -..+.+||...
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfF---s---K-~g~v~~lg~d~~y~l--Inn~~~~lgne 69 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNILSFF---S---K-DGQVKVLGMDKGYTL--INNFFKHLGNE 69 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeee---c---c-CCceEEEecccceeh--HHHHHHhhccc
Confidence 57889999999999999999999999999998754210 0 1 16777777643 222 24566666543
No 205
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=31.69 E-value=80 Score=21.99 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=30.7
Q ss_pred eEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~ 58 (275)
+..++.++|+.|+...=.++.. +..+....++.. ..+.+.+...- ..+|.+..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~-~~~~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT-QEPGLSGRFFV-TALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc-CCHhHHHHcCC-cccCEEEE
Confidence 4566888999998765444332 223343444433 33445444444 57998875
No 206
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=31.59 E-value=1.4e+02 Score=21.48 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=33.9
Q ss_pred eEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeeeec
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPVCE 65 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l~e 65 (275)
+..++.++|+.|+.+.-.++.. ++.| ..++.... .+.+..-- ..+|++.. +|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f--~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKF--VKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEE--EEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEE
Confidence 3456889999999876666542 3333 33443322 44444444 58999985 7766543
No 207
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=31.26 E-value=1.9e+02 Score=20.50 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=29.9
Q ss_pred eEEEecCCChHHHHHHHHHHH-----cCCCceEEEcCCCCCchHHH-hcCCCCCcccEEE
Q 023929 4 VKLHGRLLSPFVCRVIWALKL-----KGVPYEFVAEDLSNKSDLLL-KYNPVHKKIPVLV 57 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~-----~gi~y~~~~v~~~~~~~~~~-~~~P~~g~vP~L~ 57 (275)
+..++.++||.|+...-.++. ++-.+....++.......+. +.... ..+|.+.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 566789999999986544433 23234444444332223333 23444 5799887
No 208
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.00 E-value=60 Score=21.02 Aligned_cols=33 Identities=18% Similarity=-0.027 Sum_probs=20.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCC
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDL 36 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~ 36 (275)
.++|+.....-++.++-+|+..||++....-..
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 367877777788999999999999988776543
No 209
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=28.63 E-value=78 Score=23.66 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred ecCCChHHHHHHHHHHH----cCCCceEEEcCCCCC------chHHHh--cCCCCCcccEEEe--CCeeeechHH
Q 023929 8 GRLLSPFVCRVIWALKL----KGVPYEFVAEDLSNK------SDLLLK--YNPVHKKIPVLVH--GGKPVCESMI 68 (275)
Q Consensus 8 ~~~~sp~~~~vrl~L~~----~gi~y~~~~v~~~~~------~~~~~~--~~P~~g~vP~L~~--~g~~l~eS~a 68 (275)
+.+|||.|+++.-.++. +.-....+.+...++ +-.|++ .-.. ..||+|.- ++..|.|...
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhh
Confidence 45799999987644443 322334444433322 223433 1123 35999984 4556666543
No 210
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.58 E-value=1e+02 Score=24.36 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=26.4
Q ss_pred ceEEEecCCChHHHHH----HHHHHHc-CCCceEEEcCCC
Q 023929 3 EVKLHGRLLSPFVCRV----IWALKLK-GVPYEFVAEDLS 37 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~v----rl~L~~~-gi~y~~~~v~~~ 37 (275)
++++|+...||||... +-+++.. ++.++.+++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4789999999999653 4444555 888888888765
No 211
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=28.47 E-value=2.6e+02 Score=23.17 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHhCcCCCCCcc-cC
Q 023929 86 NPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSI---TGQELENAKKEILEILQTLEEHGLRERNFF-NG 159 (275)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl-~G 159 (275)
++..+...+..+....+.|...+.+..|..++..+....... ..+..+-+...+.+.++.++++.=+++||+ +|
T Consensus 24 ~~~~~~~~~~~~~~qas~F~~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaG 101 (207)
T PF11288_consen 24 DPEMRALARGVVRNQASAFNGVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAG 101 (207)
T ss_pred CHHHHHHHHHHHHHHhhhhhcCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 455577777777777777888888888988877776655221 233334456666666666534443567886 45
No 212
>PRK13947 shikimate kinase; Provisional
Probab=28.41 E-value=79 Score=24.56 Aligned_cols=31 Identities=10% Similarity=-0.112 Sum_probs=27.9
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceE
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEF 31 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~ 31 (275)
|..+.|.+.++|+-+.-.+.+.+..|.+|-.
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7778999999999999999999999998744
No 213
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=28.03 E-value=57 Score=22.96 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhhhhccc
Q 023929 245 SHFVLVLFMYWCLKMFFSLCFCYCLVSR 272 (275)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (275)
--+|-+...++...+++++..||-+++.
T Consensus 8 k~YG~~~l~vy~~~s~~~~~~~y~~v~~ 35 (91)
T PF06916_consen 8 KKYGYVALGVYLGLSFISLGSCYLAVSS 35 (91)
T ss_pred HHhCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578889999999999999999988764
No 214
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=27.83 E-value=71 Score=22.68 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=13.8
Q ss_pred eEEEecCCChHHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALK 23 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~ 23 (275)
+.+++.++||+|++..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 55678899999998866555
No 215
>PF13728 TraF: F plasmid transfer operon protein
Probab=27.71 E-value=2.3e+02 Score=23.48 Aligned_cols=53 Identities=15% Similarity=0.013 Sum_probs=35.7
Q ss_pred eEEEecCCChHHHH----HHHHHHHcCCCceEEEcCCC--------CCchHH-HhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCR----VIWALKLKGVPYEFVAEDLS--------NKSDLL-LKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~----vrl~L~~~gi~y~~~~v~~~--------~~~~~~-~~~~P~~g~vP~L~~ 58 (275)
+.+++.+.||+|+. ++.+.+..|++...+.+|-. ..+... ...+. ..+|+|..
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~L 189 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALFL 189 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEEE
Confidence 55678889999976 67777778998888877632 112333 34444 48998873
No 216
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=27.57 E-value=1.4e+02 Score=23.19 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=33.2
Q ss_pred eEEEecCCChHHHHHHHHHHHc-----CCCceEEEcCCCCCchHHHhcCCCC-----CcccEEEe--CCeeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK-----GVPYEFVAEDLSNKSDLLLKYNPVH-----KKIPVLVH--GGKPVC 64 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~-----gi~y~~~~v~~~~~~~~~~~~~P~~-----g~vP~L~~--~g~~l~ 64 (275)
+..++.++||.|+...-.++.. +-.+....++... .++..+..--. +++|++.. +|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 5567888999998866544332 2224444555433 23443322220 23898874 776654
No 217
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=27.51 E-value=1.5e+02 Score=19.75 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=29.7
Q ss_pred cccEEEeCCeeeechHHHHHHHHHhCCCCC-----CCC----CCHHHHHHHHHHHH
Q 023929 52 KIPVLVHGGKPVCESMIILEYIEEMWPQNP-----LMP----NNPYDRALARFWIK 98 (275)
Q Consensus 52 ~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~-----l~p----~~~~~~a~~~~~~~ 98 (275)
+=||+.-+| ..+|-.+|.+||.+..+... +.. .+...|..++.|+.
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH
Confidence 568888788 88999999999998433111 211 13456667766654
No 218
>PRK13949 shikimate kinase; Provisional
Probab=27.11 E-value=87 Score=24.70 Aligned_cols=31 Identities=16% Similarity=-0.011 Sum_probs=27.6
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCceE
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYEF 31 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~ 31 (275)
|.++.|.+.++|+.+.-.+++.+..|++|-.
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 7779999999999999999999999987554
No 219
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=26.50 E-value=85 Score=21.55 Aligned_cols=52 Identities=8% Similarity=-0.107 Sum_probs=29.6
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCC------ceEEEcCCCCCchHHHhcCCCCCcccEEE
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVP------YEFVAEDLSNKSDLLLKYNPVHKKIPVLV 57 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~------y~~~~v~~~~~~~~~~~~~P~~g~vP~L~ 57 (275)
+..|+.++|+.|+...-.++...-. +....++. +....+.+.... ..+|.+.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA-TAEKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc-cchHHHHHhCCC-CcCCEEE
Confidence 6677899999998865444332111 22223332 334555544444 5799885
No 220
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=2.6e+02 Score=26.51 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=49.8
Q ss_pred eEEEecCCChHHHH-------HHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCee------eechHH
Q 023929 4 VKLHGRLLSPFVCR-------VIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKP------VCESMI 68 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~-------vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~------l~eS~a 68 (275)
+.-||-|||++|.+ +--.|.+.|-+.....||-... .++.+..-. .-.|+|.+ +|.. --+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 45678899999965 4455666666777777775432 444444444 46899886 6653 346888
Q ss_pred HHHHHHHhCC
Q 023929 69 ILEYIEEMWP 78 (275)
Q Consensus 69 Il~yL~~~~~ 78 (275)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999998765
No 221
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=25.39 E-value=4e+02 Score=22.24 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=39.8
Q ss_pred eEEEecCCChHHHHHHHHHHHc----CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee------echHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK----GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV------CESMIILE 71 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~----gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l------~eS~aIl~ 71 (275)
+..++-+||+.|+...-.++.. +-......++.. ..+++.+...- ..+|.+.. +|..+ .....|.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~-~~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT-RALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc-ccHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHH
Confidence 4566889999998765544332 212333344433 33455555444 57998874 66543 12345556
Q ss_pred HHHHhC
Q 023929 72 YIEEMW 77 (275)
Q Consensus 72 yL~~~~ 77 (275)
++.+.+
T Consensus 134 fi~~~~ 139 (224)
T PTZ00443 134 FALGDF 139 (224)
T ss_pred HHHHHH
Confidence 655554
No 222
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=24.81 E-value=1.9e+02 Score=24.42 Aligned_cols=42 Identities=12% Similarity=-0.030 Sum_probs=30.4
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLL 44 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~ 44 (275)
.+.|||.|+++.+--++++..+.|.++....-...++..++.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~ 93 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLA 93 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHH
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHH
Confidence 478999999999999999999999999876553334444443
No 223
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=24.75 E-value=1.5e+02 Score=20.96 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=32.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcC------C----CceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKG------V----PYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~g------i----~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~ 61 (275)
+..++-++|+.|+...-.++..- . .+....++-.. ..++.+.... ..+|.+.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-~~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-ESDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CHHHHHhCCC-CcCCEEEEEeCCc
Confidence 45668899999998765554321 1 12333344332 3455554444 58998874 554
No 224
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=24.31 E-value=1e+02 Score=26.14 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.1
Q ss_pred eEEEecCCChHHHHHHHHHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKL 24 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~ 24 (275)
+.+|.-+.||||++.+--+..
T Consensus 121 I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 667789999999998776653
No 225
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.23 E-value=44 Score=24.82 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCceEEEcCCCC-CchHHHhcCCCCCcccEEEe---CCeeeechHHHHHHHHHhC
Q 023929 16 CRVIWALKLKGVPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVH---GGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 16 ~~vrl~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~---~g~~l~eS~aIl~yL~~~~ 77 (275)
.-++=+++..|++.+....+-.. ...+-....|+.|..|.+.| .=.+.-|...|+.||+++.
T Consensus 26 ~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 26 ALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34555666778877765553211 11111124455589999886 2356678888999998763
No 226
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=23.81 E-value=1e+02 Score=24.85 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=18.5
Q ss_pred ceEEEecCCChHHHHHHHHHHH
Q 023929 3 EVKLHGRLLSPFVCRVIWALKL 24 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~ 24 (275)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4677888999999999888874
No 227
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=23.66 E-value=2e+02 Score=21.02 Aligned_cols=53 Identities=11% Similarity=-0.118 Sum_probs=31.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCC----ceEEEcCCCCCchHHH-hcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVP----YEFVAEDLSNKSDLLL-KYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~----y~~~~v~~~~~~~~~~-~~~P~~g~vP~L~~ 58 (275)
+..++-+||+.|+...-.+++..-. .....++-. ....+. +..-- ..+|++..
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d-~~~~l~~~~~~I-~~~PTl~l 90 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW-WPQGKCRKQKHF-FYFPVIHL 90 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC-CChHHHHHhcCC-cccCEEEE
Confidence 4567889999999887766664322 223344432 334444 23333 57898874
No 228
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=23.62 E-value=2.2e+02 Score=21.03 Aligned_cols=41 Identities=17% Similarity=-0.006 Sum_probs=33.7
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHH
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLL 44 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~ 44 (275)
+-|+|.++++.+.-++.+++..+.++..+.+.......++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccce
Confidence 67899999999999999999999999888887665455554
No 229
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=23.21 E-value=2.5e+02 Score=19.18 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=29.0
Q ss_pred eEEEecCCChHHHHHHHHH----HHcC--CCceEEEcCCCC-CchHHHhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWAL----KLKG--VPYEFVAEDLSN-KSDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L----~~~g--i~y~~~~v~~~~-~~~~~~~~~P~~g~vP~L~~ 58 (275)
+.+++-++|+.|+...=.+ +..+ -.+....++... ....+.+...- ..+|.+..
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~ 81 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKY 81 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEE
Confidence 4567888999999874222 2211 122333333332 24455444444 47898874
No 230
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=23.19 E-value=1.5e+02 Score=20.38 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=30.4
Q ss_pred eEEEecCCChHHHHHHHHHHH-----cC--CCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCe
Q 023929 4 VKLHGRLLSPFVCRVIWALKL-----KG--VPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGK 61 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~-----~g--i~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~ 61 (275)
+..++-++|+.|+...-.++. .+ -.+....++... ...+.+...- ..+|.+.. +|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-HRELCSEFQV-RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-ChhhHhhcCC-CcCCEEEEEeCCC
Confidence 456688899999975433322 23 134444444332 2344433343 57998773 553
No 231
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.99 E-value=91 Score=21.28 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCCCceEEEcC
Q 023929 13 PFVCRVIWALKLKGVPYEFVAED 35 (275)
Q Consensus 13 p~~~~vrl~L~~~gi~y~~~~v~ 35 (275)
++++|+.-.|+..|++|+..+-.
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCC
Confidence 69999999999999999988764
No 232
>PRK06217 hypothetical protein; Validated
Probab=22.91 E-value=1.1e+02 Score=24.28 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=26.4
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCc
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPY 29 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y 29 (275)
|.++.+.|.++|+.+.-.+.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 67799999999999999999999999874
No 233
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=22.91 E-value=1.4e+02 Score=20.83 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=30.2
Q ss_pred eEEEecCCChHHHHHHHHHHHcCC----CceEEEcCCCCCchHHHhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGV----PYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi----~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~ 58 (275)
+..++.++|+.|++..=.++..-- ......++.. ..+++.+...- ..+|.+..
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i-~~~Pt~~~ 79 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ-KYESLCQQANI-RAYPTIRL 79 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC-chHHHHHHcCC-CcccEEEE
Confidence 456688999999886554443221 1333344433 23455444444 57998874
No 234
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.91 E-value=1.6e+02 Score=21.96 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=25.7
Q ss_pred ecCCChHHHHHHHHHHH-------cCCCceEEEcCCC--CCchHHHhcCCCCCcccEEEeCC
Q 023929 8 GRLLSPFVCRVIWALKL-------KGVPYEFVAEDLS--NKSDLLLKYNPVHKKIPVLVHGG 60 (275)
Q Consensus 8 ~~~~sp~~~~vrl~L~~-------~gi~y~~~~v~~~--~~~~~~~~~~P~~g~vP~L~~~g 60 (275)
...+||.|++-.-.|.. .|+. .+.+... .....+.+.... ..|++.|.+
T Consensus 32 ~~~~Cp~C~~~~~~l~~~~~~~~~~~v~--vv~V~~~~~~~~~~~~~~~~~--~~p~~~D~~ 89 (149)
T cd02970 32 RGFGCPFCREYLRALSKLLPELDALGVE--LVAVGPESPEKLEAFDKGKFL--PFPVYADPD 89 (149)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCeE--EEEEeCCCHHHHHHHHHhcCC--CCeEEECCc
Confidence 35699999873333322 3444 4444433 222235554443 578887754
No 235
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=22.82 E-value=3.9e+02 Score=21.19 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=33.2
Q ss_pred EEEecCCChHHHHHHHHHHHc---CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeeeec
Q 023929 5 KLHGRLLSPFVCRVIWALKLK---GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPVCE 65 (275)
Q Consensus 5 ~Ly~~~~sp~~~~vrl~L~~~---gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l~e 65 (275)
..++.++|+.|+.+--.|+.. --......++... . ++.+..+- ..+|++.. +|..+..
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~-~-~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA-T-GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc-h-hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 345778999998764333221 1123334444332 2 45555665 68999985 7876653
No 236
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.19 E-value=6.2e+02 Score=23.27 Aligned_cols=140 Identities=9% Similarity=-0.053 Sum_probs=73.2
Q ss_pred eEEEe-cCCChHHHHHHHHHHHcCCCceEEEcCCCCCchHHHhcCCCCCcccEEEeCCeeeechHHHHHHHHHhCCCCCC
Q 023929 4 VKLHG-RLLSPFVCRVIWALKLKGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVHGGKPVCESMIILEYIEEMWPQNPL 82 (275)
Q Consensus 4 ~~Ly~-~~~sp~~~~vrl~L~~~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~~g~~l~eS~aIl~yL~~~~~~~~l 82 (275)
+.|.+ +......+-++-+|+..|++...... ....-+++.+... .++=++.... .....+++|+++|+-+-+
T Consensus 175 VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~-~~~t~eei~~~~~--A~lniv~~~~----~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 175 VNIIGDYNIGGDAWASRILLEEMGLRVVAQWS-GDGTLNEMENAHK--AKLNLIHCYR----SMNYIARMMEEKYGIPWM 247 (421)
T ss_pred EEEEecCCCCccHHHHHHHHHHcCCeEEEEeC-CCCCHHHHHhccc--CCEEEEECcH----HHHHHHHHHHHHhCCcEE
Confidence 44543 22334557788889999998874332 2233455544332 2333322110 113589999999975432
Q ss_pred CCCCHHHHHHHHHHHHHHHhccccccccccchhhHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcCCCCCcc-cCCC
Q 023929 83 MPNNPYDRALARFWIKFAEDKLVRTTTLAIPFISVVAILKLFRSITGQELENAKKEILEILQTLEEHGLRERNFF-NGDN 161 (275)
Q Consensus 83 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~e~~L~~~~fl-~G~~ 161 (275)
.. .|..-...+.|+..+...+.. ..... .++..++.++++.+.++.. ...|++.+.. .|+
T Consensus 248 ~~-~p~Gi~~t~~~l~~ia~~~g~------------~~~~~----~e~~i~~e~~~~~~~l~~~-~~~L~Gkrv~i~~g- 308 (421)
T cd01976 248 EY-NFFGPTKIAESLRKIAAYFDD------------EITAK----TEEVIAEYKPAMEAVIAKY-RPRLEGKTVMLYVG- 308 (421)
T ss_pred ec-ccCCHHHHHHHHHHHHHHhCc------------hHHHH----HHHHHHHHHHHHHHHHHHH-HHHcCCCEEEEECC-
Confidence 22 244555566666666555442 00000 0112344566677777777 7778777655 343
Q ss_pred CChhHhhh
Q 023929 162 IGLVDIAF 169 (275)
Q Consensus 162 ~T~ADi~l 169 (275)
.+-+|..+
T Consensus 309 ~~~~~~~~ 316 (421)
T cd01976 309 GLRPRHYI 316 (421)
T ss_pred CCcHHHHH
Confidence 34555554
No 237
>PRK10996 thioredoxin 2; Provisional
Probab=22.05 E-value=3.5e+02 Score=20.35 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=34.3
Q ss_pred eEEEecCCChHHHHHHHHHHH----cCCCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKL----KGVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~----~gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..++-++|+.|+...-.++. .+-.+....++... .+++.+..-- ..+|.+.. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~-~~~l~~~~~V-~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA-ERELSARFRI-RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CHHHHHhcCC-CccCEEEEEECCEEE
Confidence 456688899999976544443 22234445555543 3445444444 57998874 66544
No 238
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.03 E-value=75 Score=19.27 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=30.0
Q ss_pred ccHHHHHHHhcccchhhhcCCCchhHHHHHhhhhcCCCCc
Q 023929 194 PSLHTWFENFKQVPEIEENFPNRDDIWFISNIAVNSGWPL 233 (275)
Q Consensus 194 P~l~~w~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 233 (275)
..+.++++++++.|.+++-+................|+.+
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKACQNPEEVVALAREAGYDF 43 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCCC
Confidence 3688999999999999998887766655555555555554
No 239
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=22.00 E-value=1.4e+02 Score=24.99 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=18.6
Q ss_pred ceEEEecCCChHHHHHHHHHHHc
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLK 25 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~ 25 (275)
.+.+|..+.||||++.+--+...
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 36788999999999988777653
No 240
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=21.90 E-value=1.7e+02 Score=21.08 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=25.9
Q ss_pred eEEEecCCChHHHHHHHHHHHcCCCceEEEc
Q 023929 4 VKLHGRLLSPFVCRVIWALKLKGVPYEFVAE 34 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v 34 (275)
+-|+|.++++.+.-++.+.+..|.++-....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 4689999999999999999999977654443
No 241
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=21.76 E-value=3.8e+02 Score=20.62 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=42.7
Q ss_pred ceEEEecCCChHHHHHHHHHHHcCCCceEEEcCCC-CCchHHHhcCCCC--C-cccEEEeCCeeeechHHHHHHHHHhC
Q 023929 3 EVKLHGRLLSPFVCRVIWALKLKGVPYEFVAEDLS-NKSDLLLKYNPVH--K-KIPVLVHGGKPVCESMIILEYIEEMW 77 (275)
Q Consensus 3 ~~~Ly~~~~sp~~~~vrl~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~~--g-~vP~L~~~g~~l~eS~aIl~yL~~~~ 77 (275)
++++++-..||.|-..--+|..+.-.-..+..++. +..-.++...+.. . ..=.++.+|..+.+|.|+++-+...-
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 56777888999997744455544333333333332 1122233332220 1 12233458999999999999887764
No 242
>PRK08118 topology modulation protein; Reviewed
Probab=21.44 E-value=1.3e+02 Score=23.62 Aligned_cols=30 Identities=17% Similarity=-0.043 Sum_probs=27.3
Q ss_pred CcceEEEecCCChHHHHHHHHHHHcCCCce
Q 023929 1 MAEVKLHGRLLSPFVCRVIWALKLKGVPYE 30 (275)
Q Consensus 1 Ms~~~Ly~~~~sp~~~~vrl~L~~~gi~y~ 30 (275)
|.++.+.|.++|+-+.-++.+.+..|+++-
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 778999999999999999999999999854
No 243
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=20.74 E-value=2e+02 Score=19.25 Aligned_cols=53 Identities=8% Similarity=-0.122 Sum_probs=31.9
Q ss_pred eEEEecCCChHHHHHHHHHHHc------CCCceEEEcCCCCCchHHHhcCCCCCcccEEEe
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK------GVPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH 58 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~------gi~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~ 58 (275)
+.+++.++|++|+...-.++.. +-.+....++... ...+.+.... ..+|.+..
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIKL 77 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEEE
Confidence 5667888999999977666442 2234444444332 3455544444 57898864
No 244
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.50 E-value=6.7e+02 Score=23.00 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=52.5
Q ss_pred eEEE-ecCCCh-HHHHHHHHHHHcCCCceEEEcC-----------------CCCCchHHHhcCCCCCcccEEEeCCeeee
Q 023929 4 VKLH-GRLLSP-FVCRVIWALKLKGVPYEFVAED-----------------LSNKSDLLLKYNPVHKKIPVLVHGGKPVC 64 (275)
Q Consensus 4 ~~Ly-~~~~sp-~~~~vrl~L~~~gi~y~~~~v~-----------------~~~~~~~~~~~~P~~g~vP~L~~~g~~l~ 64 (275)
+.|. +++..+ ...-++-+|+..|++.....-. -...-+++.+.... .+=++... .
T Consensus 158 VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A--~lniv~~~----~ 231 (428)
T cd01965 158 VNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNA--KATIALGE----Y 231 (428)
T ss_pred EEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccC--cEEEEECh----h
Confidence 4444 333333 3788999999999998776531 01122344333221 22221111 2
Q ss_pred chHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccc
Q 023929 65 ESMIILEYIEEMWPQNPLMPNNPYDRALARFWIKFAEDKLV 105 (275)
Q Consensus 65 eS~aIl~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~ 105 (275)
.....+++|+++|+-+-+....|..-...+.|+..+.+.+.
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g 272 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLKATDEFLRALSKLSG 272 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChHHHHHHHHHHHHHHC
Confidence 34678999999998554433334555566666666665543
No 245
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=20.08 E-value=3.2e+02 Score=19.09 Aligned_cols=57 Identities=19% Similarity=0.037 Sum_probs=31.0
Q ss_pred eEEEecCCChHHHHHHHHHHHc----C-CCceEEEcCCCCCchHHHhcCCCCCcccEEEe--CCeee
Q 023929 4 VKLHGRLLSPFVCRVIWALKLK----G-VPYEFVAEDLSNKSDLLLKYNPVHKKIPVLVH--GGKPV 63 (275)
Q Consensus 4 ~~Ly~~~~sp~~~~vrl~L~~~----g-i~y~~~~v~~~~~~~~~~~~~P~~g~vP~L~~--~g~~l 63 (275)
+..++-+||+.|+...-.++.. + -......++.. .++..+..-- ..+|++.. +|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEEE
Confidence 3456888999999865444432 2 11223333333 2344444444 57898774 66543
Done!