BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023930
MSREREREMAATTPSSSSQPKMPPQTQPNGTHHHQRRPHPPPPPPLQPQSQYHHHHDHHQ
YYPTTSSSSSASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMG
ISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKA
SVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMN
FDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV

High Scoring Gene Products

Symbol, full name Information P value
AT2G01080 protein from Arabidopsis thaliana 2.7e-59
AT3G44380 protein from Arabidopsis thaliana 0.00021
AT3G54200 protein from Arabidopsis thaliana 0.00026

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023930
        (275 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2045771 - symbol:AT2G01080 "AT2G01080" species...   608  2.7e-59   1
TAIR|locus:2100177 - symbol:AT3G44380 "AT3G44380" species...    98  0.00021   2
TAIR|locus:2080320 - symbol:AT3G54200 "AT3G54200" species...   107  0.00026   1


>TAIR|locus:2045771 [details] [associations]
            symbol:AT2G01080 "AT2G01080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR004864 GO:GO:0005886 EMBL:CP002685
            Pfam:PF03168 EMBL:AC006837 UniGene:At.42518 IPI:IPI00523953
            PIR:D84420 RefSeq:NP_565250.1 UniGene:At.14053
            ProteinModelPortal:Q9SJV8 PRIDE:Q9SJV8 EnsemblPlants:AT2G01080.1
            GeneID:814636 KEGG:ath:AT2G01080 TAIR:At2g01080 InParanoid:Q9SJV8
            OMA:IRYGATA PhylomeDB:Q9SJV8 ProtClustDB:CLSN2687644
            ArrayExpress:Q9SJV8 Genevestigator:Q9SJV8 Uniprot:Q9SJV8
        Length = 231

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 122/173 (70%), Positives = 137/173 (79%)

Query:   103 KPKKPQFDLQQVGVQYMGISTPNPTSSVDPXXXXXXXXXXXXXXXXXXFTAANPNKVGIK 162
             KPKKPQFDLQQV V YMGIS  NP++ +DP                  FTA NPNKVGI+
Sbjct:    67 KPKKPQFDLQQVAVVYMGIS--NPSAVLDPTTASLSLTIRML------FTAVNPNKVGIR 118

Query:   163 YGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLND 222
             YGES FTVMY+G+PLG+A+VPGFYQ AHS +NVEATI+VDR NLMQA AA L++DASLND
Sbjct:   119 YGESSFTVMYKGMPLGRATVPGFYQDAHSTKNVEATISVDRVNLMQAHAADLVRDASLND 178

Query:   223 RVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV 275
             RVEL V GDV AKIRVMNFDSPGVQVSV+C I ISPRKQ+L YKQCGFDGL+V
Sbjct:   179 RVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRKQALIYKQCGFDGLSV 231


>TAIR|locus:2100177 [details] [associations]
            symbol:AT3G44380 "AT3G44380" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0009269 "response to
            desiccation" evidence=IEA] InterPro:IPR013990 SMART:SM00769
            InterPro:IPR004864 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0009269 EMBL:AL138641 Pfam:PF03168 UniGene:At.1345
            IPI:IPI00523939 PIR:T47428 RefSeq:NP_190024.1
            ProteinModelPortal:Q9M287 PaxDb:Q9M287 PRIDE:Q9M287
            EnsemblPlants:AT3G44380.1 GeneID:823563 KEGG:ath:AT3G44380
            TAIR:At3g44380 eggNOG:NOG299663 HOGENOM:HOG000006316
            InParanoid:Q9M287 OMA:VHVTNPN PhylomeDB:Q9M287
            ProtClustDB:CLSN2684481 Genevestigator:Q9M287 Uniprot:Q9M287
        Length = 186

 Score = 98 (39.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 29/104 (27%), Positives = 45/104 (43%)

Query:   155 NPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASL 214
             NPN   I Y  +K T++Y G  LG A V    Q A S + +     +D   L Q  A   
Sbjct:    67 NPNIAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQ-HARQF 125

Query:   215 IKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISP 258
               D + N  ++L     +    +V+ +D    +V VD  + + P
Sbjct:   126 FSDVA-NREMKLEAKLTIEGAAKVLWWDH-SFRVHVDSFVTVDP 167

 Score = 37 (18.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query:   103 KPKKPQFDLQQVGVQYMGISTP 124
             KPK P F L  + +  + ++ P
Sbjct:    32 KPKDPTFHLISIDLTSLKLNLP 53


>TAIR|locus:2080320 [details] [associations]
            symbol:AT3G54200 "AT3G54200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0046658 "anchored to plasma membrane"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR004864
            GO:GO:0009506 EMBL:CP002686 GO:GO:0046658 EMBL:AL132957
            Pfam:PF03168 EMBL:AK229134 IPI:IPI00521889 PIR:T47579
            RefSeq:NP_190988.1 UniGene:At.27525 ProteinModelPortal:Q9M386
            STRING:Q9M386 PRIDE:Q9M386 EnsemblPlants:AT3G54200.1 GeneID:824587
            KEGG:ath:AT3G54200 TAIR:At3g54200 InParanoid:Q9M386 OMA:NASSMET
            PhylomeDB:Q9M386 ProtClustDB:CLSN2685083 Genevestigator:Q9M386
            Uniprot:Q9M386
        Length = 235

 Score = 107 (42.7 bits), Expect = 0.00026, P = 0.00026
 Identities = 32/118 (27%), Positives = 53/118 (44%)

Query:   155 NPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSV--RNVEATIAVDRANLMQADAA 212
             NPN++G  Y  S   + YRG  +G+A +P     A      N+  T+  DR  L+     
Sbjct:   119 NPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADR--LLSE--T 174

Query:   213 SLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGF 270
              L+ D  +   + L     V+ K+ V+      VQ S  C + IS   +++T + C +
Sbjct:   175 QLLSDV-MAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKY 231


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      275       175   0.00078  109 3  11 22  0.43    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  125 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.61u 0.12s 12.73t   Elapsed:  00:00:01
  Total cpu time:  12.61u 0.12s 12.73t   Elapsed:  00:00:01
  Start:  Sat May 11 03:31:01 2013   End:  Sat May 11 03:31:02 2013

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