Query 023930
Match_columns 275
No_of_seqs 158 out of 873
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.9E-37 4.1E-42 275.2 27.9 166 91-271 51-216 (219)
2 PF03168 LEA_2: Late embryogen 99.4 2.3E-12 5E-17 99.2 9.9 98 150-253 1-100 (101)
3 smart00769 WHy Water Stress an 98.7 2.8E-07 6.1E-12 72.0 11.4 86 142-232 12-98 (100)
4 PF12751 Vac7: Vacuolar segreg 98.0 4.6E-05 1E-09 72.4 10.7 87 69-178 295-381 (387)
5 PF07092 DUF1356: Protein of u 98.0 0.00033 7.1E-09 62.9 15.5 61 141-201 120-181 (238)
6 COG5608 LEA14-like dessication 97.6 0.0063 1.4E-07 51.1 16.2 92 145-242 50-142 (161)
7 PLN03160 uncharacterized prote 97.1 0.015 3.2E-07 51.9 13.8 46 72-117 35-82 (219)
8 PF12734 CYSTM: Cysteine-rich 67.9 4 8.6E-05 26.2 1.7 6 41-46 3-8 (37)
9 PF09624 DUF2393: Protein of u 66.1 45 0.00097 27.4 8.2 35 146-180 63-97 (149)
10 KOG3950 Gamma/delta sarcoglyca 65.1 9.9 0.00022 34.6 4.3 23 140-162 103-126 (292)
11 PF12505 DUF3712: Protein of u 64.7 58 0.0013 26.0 8.5 69 176-250 2-71 (125)
12 PF14155 DUF4307: Domain of un 62.0 79 0.0017 25.1 10.2 27 171-200 71-99 (112)
13 COG4698 Uncharacterized protei 60.4 8.4 0.00018 33.5 2.8 32 84-115 16-47 (197)
14 PF11395 DUF2873: Protein of u 58.7 4.4 9.5E-05 26.1 0.6 18 86-103 16-33 (43)
15 PF10907 DUF2749: Protein of u 55.6 13 0.00027 27.0 2.6 20 86-105 9-28 (66)
16 PRK10893 lipopolysaccharide ex 51.0 1.7E+02 0.0036 25.5 11.4 19 103-121 37-55 (192)
17 PF11906 DUF3426: Protein of u 50.6 1E+02 0.0023 25.0 7.9 37 146-182 69-106 (149)
18 PF05478 Prominin: Prominin; 50.5 12 0.00027 39.6 2.8 26 69-94 133-158 (806)
19 KOG0307 Vesicle coat complex C 49.2 27 0.00058 38.0 4.9 46 17-63 768-813 (1049)
20 PF11837 DUF3357: Domain of un 48.9 5.7 0.00012 31.4 0.0 8 42-49 5-12 (106)
21 PF01102 Glycophorin_A: Glycop 48.5 7.9 0.00017 31.5 0.8 29 85-113 72-101 (122)
22 PRK13183 psbN photosystem II r 48.1 23 0.00049 23.9 2.7 24 81-104 9-32 (46)
23 PF06072 Herpes_US9: Alphaherp 47.9 4.7 0.0001 28.6 -0.5 6 95-100 54-59 (60)
24 PRK05529 cell division protein 47.1 27 0.00057 31.8 4.1 14 106-119 58-71 (255)
25 PF04790 Sarcoglycan_1: Sarcog 46.8 18 0.0004 33.2 3.0 17 141-157 82-98 (264)
26 PF15012 DUF4519: Domain of un 45.7 19 0.00042 25.3 2.2 20 86-105 37-56 (56)
27 PF09911 DUF2140: Uncharacteri 45.3 29 0.00063 30.1 3.9 24 84-107 8-31 (187)
28 PF02468 PsbN: Photosystem II 45.0 20 0.00044 23.8 2.1 23 82-104 7-29 (43)
29 PF00927 Transglut_C: Transglu 44.8 1E+02 0.0022 23.6 6.6 60 143-202 13-77 (107)
30 TIGR02588 conserved hypothetic 44.6 81 0.0018 25.7 6.0 20 98-117 25-44 (122)
31 CHL00020 psbN photosystem II p 44.3 25 0.00055 23.4 2.5 24 81-104 6-29 (43)
32 COG1580 FliL Flagellar basal b 43.7 82 0.0018 26.8 6.2 26 78-103 18-43 (159)
33 PHA02844 putative transmembran 42.9 13 0.00027 27.7 1.0 6 95-100 64-69 (75)
34 PRK06531 yajC preprotein trans 42.4 12 0.00026 30.1 0.9 11 97-107 15-25 (113)
35 PF02162 XYPPX: XYPPX repeat ( 41.8 21 0.00046 18.4 1.4 10 41-50 4-13 (15)
36 PF06024 DUF912: Nucleopolyhed 41.5 35 0.00075 26.6 3.4 7 98-104 83-89 (101)
37 cd07912 Tweety_N N-terminal do 41.3 21 0.00045 35.1 2.6 10 77-86 79-88 (418)
38 PF09753 Use1: Membrane fusion 41.2 24 0.00052 31.8 2.8 9 78-86 228-236 (251)
39 PF14927 Neurensin: Neurensin 40.5 43 0.00092 28.0 3.9 18 80-97 46-63 (140)
40 PF04806 EspF: EspF protein re 37.8 10 0.00022 25.2 -0.1 22 6-27 4-25 (47)
41 PF09865 DUF2092: Predicted pe 37.7 2.8E+02 0.006 24.7 8.9 39 141-179 35-75 (214)
42 PF07787 DUF1625: Protein of u 37.6 32 0.00069 31.0 3.0 13 92-104 236-248 (248)
43 PF06092 DUF943: Enterobacteri 37.1 23 0.0005 30.1 1.9 13 92-104 16-28 (157)
44 COG4736 CcoQ Cbb3-type cytochr 36.4 20 0.00043 25.6 1.2 12 95-106 23-34 (60)
45 PF05545 FixQ: Cbb3-type cytoc 36.2 20 0.00044 24.0 1.2 11 96-106 24-34 (49)
46 KOG2322 N-methyl-D-aspartate r 36.2 70 0.0015 29.0 4.9 29 18-46 2-30 (237)
47 PF09604 Potass_KdpF: F subuni 36.1 18 0.00038 21.3 0.7 17 90-106 8-24 (25)
48 PF12505 DUF3712: Protein of u 35.4 93 0.002 24.8 5.1 26 145-170 100-125 (125)
49 KOG4368 Predicted RNA binding 35.3 94 0.002 31.9 6.0 28 4-31 283-310 (757)
50 PF05478 Prominin: Prominin; 34.7 28 0.00061 36.9 2.5 17 81-97 141-157 (806)
51 PF14283 DUF4366: Domain of un 34.3 31 0.00068 30.8 2.4 18 92-109 173-190 (218)
52 PF04478 Mid2: Mid2 like cell 34.3 38 0.00083 28.7 2.7 18 92-109 65-82 (154)
53 KOG1923 Rac1 GTPase effector F 33.8 57 0.0012 34.4 4.4 21 12-32 274-294 (830)
54 KOG4331 Polytopic membrane pro 33.4 28 0.00061 36.8 2.2 28 72-99 128-172 (865)
55 PF02009 Rifin_STEVOR: Rifin/s 32.4 20 0.00043 33.6 0.8 15 89-103 266-280 (299)
56 PHA02692 hypothetical protein; 31.7 22 0.00048 26.1 0.8 7 79-85 45-51 (70)
57 PF11770 GAPT: GRB2-binding ad 31.5 52 0.0011 27.8 3.0 30 82-111 14-43 (158)
58 PF09307 MHC2-interact: CLIP, 30.9 16 0.00036 29.4 0.0 16 88-104 43-58 (114)
59 PF07705 CARDB: CARDB; InterP 29.6 2.2E+02 0.0048 20.6 7.4 51 146-200 20-70 (101)
60 PF06637 PV-1: PV-1 protein (P 29.4 38 0.00082 32.9 2.1 19 87-105 34-53 (442)
61 KOG3514 Neurexin III-alpha [Si 29.4 1.4E+02 0.003 33.1 6.3 6 18-23 1414-1419(1591)
62 KOG2236 Uncharacterized conser 28.7 92 0.002 31.0 4.7 8 55-62 475-482 (483)
63 PF06692 MNSV_P7B: Melon necro 28.3 43 0.00094 23.5 1.7 9 101-109 31-39 (61)
64 PRK01844 hypothetical protein; 28.3 54 0.0012 24.3 2.3 18 79-96 4-21 (72)
65 cd01324 cbb3_Oxidase_CcoQ Cyto 27.8 39 0.00083 22.9 1.4 9 97-105 26-34 (48)
66 TIGR02115 potass_kdpF K+-trans 26.5 16 0.00035 21.7 -0.5 17 90-106 7-23 (26)
67 PRK07021 fliL flagellar basal 26.2 2E+02 0.0042 24.1 5.8 15 161-175 78-92 (162)
68 PRK14759 potassium-transportin 25.5 47 0.001 20.2 1.3 16 91-106 13-28 (29)
69 PRK08455 fliL flagellar basal 25.5 28 0.0006 30.2 0.5 9 97-105 37-45 (182)
70 PHA03030 hypothetical protein; 25.5 56 0.0012 25.9 2.1 12 79-90 3-14 (122)
71 PRK15319 AIDA autotransporter- 25.3 1E+02 0.0023 35.8 4.9 8 58-65 1723-1730(2039)
72 PHA02642 C-type lectin-like pr 24.9 60 0.0013 29.0 2.5 9 262-270 184-192 (216)
73 KOG2391 Vacuolar sorting prote 24.7 1.3E+02 0.0028 28.9 4.7 18 33-50 167-184 (365)
74 PF06129 Chordopox_G3: Chordop 23.9 79 0.0017 25.3 2.7 25 150-174 54-85 (109)
75 COG1589 FtsQ Cell division sep 23.9 90 0.002 28.4 3.6 28 91-118 42-69 (269)
76 PF11322 DUF3124: Protein of u 23.8 2.4E+02 0.0052 23.1 5.6 50 144-196 22-74 (125)
77 KOG1785 Tyrosine kinase negati 23.5 91 0.002 30.6 3.5 17 34-50 529-545 (563)
78 PRK00523 hypothetical protein; 23.4 75 0.0016 23.5 2.3 16 80-95 6-21 (72)
79 KOG0810 SNARE protein Syntaxin 23.3 27 0.00058 32.8 -0.1 14 72-85 271-284 (297)
80 PF08693 SKG6: Transmembrane a 22.9 73 0.0016 20.9 1.9 7 97-103 31-37 (40)
81 PF12321 DUF3634: Protein of u 22.8 40 0.00086 26.9 0.8 17 95-111 10-28 (108)
82 COG2268 Uncharacterized protei 22.8 79 0.0017 32.2 3.1 23 86-108 17-41 (548)
83 PF01445 SH: Viral small hydro 22.8 45 0.00097 23.2 1.0 9 92-100 20-28 (57)
84 PHA02902 putative IMV membrane 22.5 33 0.00072 24.8 0.3 15 89-103 11-25 (70)
85 KOG2927 Membrane component of 22.5 53 0.0011 31.6 1.7 12 92-103 240-251 (372)
86 KOG0811 SNARE protein PEP12/VA 22.2 74 0.0016 29.4 2.6 15 78-92 246-260 (269)
87 COG1862 YajC Preprotein transl 21.4 43 0.00092 26.2 0.7 10 97-106 22-31 (97)
88 PRK05886 yajC preprotein trans 21.0 40 0.00087 26.9 0.5 8 98-105 18-25 (109)
89 PF10581 Synapsin_N: Synapsin 21.0 61 0.0013 19.9 1.2 16 27-42 17-32 (32)
90 TIGR01478 STEVOR variant surfa 20.8 62 0.0014 30.2 1.8 15 87-101 269-283 (295)
91 PF08999 SP_C-Propep: Surfacta 20.8 79 0.0017 24.0 2.0 7 59-65 13-19 (93)
92 PF09677 TrbI_Ftype: Type-F co 20.7 84 0.0018 25.0 2.4 33 78-111 3-35 (111)
93 PF08113 CoxIIa: Cytochrome c 20.5 70 0.0015 20.1 1.4 8 93-100 17-24 (34)
94 PF05283 MGC-24: Multi-glycosy 20.5 3.5E+02 0.0076 23.6 6.3 7 96-102 178-184 (186)
95 PHA03049 IMV membrane protein; 20.4 42 0.00091 24.4 0.5 20 85-104 6-25 (68)
96 PF14828 Amnionless: Amnionles 20.4 62 0.0013 31.9 1.8 15 95-109 355-369 (437)
97 COG5178 PRP8 U5 snRNP spliceos 20.2 85 0.0018 35.1 2.8 33 221-253 319-354 (2365)
98 PF04639 Baculo_E56: Baculovir 20.1 96 0.0021 29.0 2.8 11 93-103 289-299 (305)
99 PF05568 ASFV_J13L: African sw 20.0 67 0.0014 27.1 1.7 21 87-107 39-59 (189)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=275.21 Aligned_cols=166 Identities=17% Similarity=0.353 Sum_probs=147.5
Q ss_pred HHHHHhheeeEeeCCCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEEEEEEEecCceeEEEEcCeEEEE
Q 023930 91 ILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTV 170 (275)
Q Consensus 91 ~~~~~li~~lvlrP~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V 170 (275)
+++++.++|++||||+|+|+|++++|++|++++.+. .+..+|++|+++|+++|||+++|+|+++++.+
T Consensus 51 ~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~------------~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v 118 (219)
T PLN03160 51 ATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTT------------LRPGTNITLIADVSVKNPNVASFKYSNTTTTI 118 (219)
T ss_pred HHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCC------------CceeEEEEEEEEEEEECCCceeEEEcCeEEEE
Confidence 455566799999999999999999999999875211 24578999999999999999999999999999
Q ss_pred EECCEEEeeeecCceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEEEEEEEEEEEeCCeEEEE
Q 023930 171 MYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSV 250 (275)
Q Consensus 171 ~Y~g~~LG~~~vp~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~~r~kvg~~~s~~~~v~V 250 (275)
+|+|+.+|.+.+|+|+|++++++.+.+++......+.. ...|.+|.. .|.++|++.+++++|+++|+++++++.+++
T Consensus 119 ~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~-~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v 195 (219)
T PLN03160 119 YYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDIS-SGLLNMNSYTRIGGKVKILKIIKKHVVVKM 195 (219)
T ss_pred EECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhh-CCeEEEEEEEEEEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999999999999988766554432 247999987 589999999999999999999999999999
Q ss_pred EEEEEEeCCCceeeecccccC
Q 023930 251 DCAIVISPRKQSLTYKQCGFD 271 (275)
Q Consensus 251 ~C~l~v~~~~~~~~~~~C~~~ 271 (275)
+|++.|+..+..+++++|+.+
T Consensus 196 ~C~v~V~~~~~~i~~~~C~~~ 216 (219)
T PLN03160 196 NCTMTVNITSQAIQGQKCKRH 216 (219)
T ss_pred EeEEEEECCCCEEeccEeccc
Confidence 999999999999999999987
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.39 E-value=2.3e-12 Score=99.24 Aligned_cols=98 Identities=29% Similarity=0.425 Sum_probs=71.5
Q ss_pred EEEEecCceeEEEEcCeEEEEEECCEEEe-eeecCceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEE
Q 023930 150 LFTAANPNKVGIKYGESKFTVMYRGIPLG-KASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRV 228 (275)
Q Consensus 150 ~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG-~~~vp~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v 228 (275)
+|+++|||.++++|++++++++|+|..|| ....++|+|++++++.+.+.+.++...+ ...+..+. .+...+++
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~--~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL--AGRVPFDV 74 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH--HTTSCEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh--ccccceEE
Confidence 57899999999999999999999999999 6889999999999999999888876543 23333333 23456666
Q ss_pred EEEEEEEEEE-EEEEeCCeEEEEEEE
Q 023930 229 LGDVSAKIRV-MNFDSPGVQVSVDCA 253 (275)
Q Consensus 229 ~~~v~~r~kv-g~~~s~~~~v~V~C~ 253 (275)
..++++++++ +.+...++.+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 6677777774 444445566666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.70 E-value=2.8e-07 Score=71.97 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=71.1
Q ss_pred eEeEEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeecC-ceeecCCceEEEEEEEEEcccccchhhHHHHhhhccC
Q 023930 142 SLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVP-GFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASL 220 (275)
Q Consensus 142 ~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~vp-~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~ 220 (275)
.++.++.+.+.+.|||.+.+.|+.++..++|+|..+|.+..+ ++..++++++.+.+.+... . .+...+..++..
T Consensus 12 ~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~----~~~~~~~~~l~~ 86 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-L----FLAEALIWHIAN 86 (100)
T ss_pred ceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-h----hHhHHHHHhhcc
Confidence 567899999999999999999999999999999999999985 8999999999999988874 2 234566677765
Q ss_pred CceEEEEEEEEE
Q 023930 221 NDRVELRVLGDV 232 (275)
Q Consensus 221 ~g~V~l~v~~~v 232 (275)
+..+++++++++
T Consensus 87 ~~~~~y~l~g~l 98 (100)
T smart00769 87 GEEIPYRLDGKL 98 (100)
T ss_pred CCCccEEEEEEE
Confidence 455777766654
No 4
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=98.01 E-value=4.6e-05 Score=72.44 Aligned_cols=87 Identities=22% Similarity=0.371 Sum_probs=53.5
Q ss_pred CCCcccceehhhHHHHHHHHHHHHHHHhheeeEeeCCCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEE
Q 023930 69 SSASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIH 148 (275)
Q Consensus 69 ~~~~~~~cccc~~~~l~~l~ll~~~~~li~~lvlrP~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~ 148 (275)
++.+|.+.++|+++.|++|+++.+++.++ +-.-|| --.|+=+.|.+.-.+ .-..-|+
T Consensus 295 ~r~~~~r~~~c~~~~i~~lL~ig~~~gFv-~AttKp---L~~v~v~~I~NVlaS-------------------~qELmfd 351 (387)
T PF12751_consen 295 QRSWFSRFASCIYLSILLLLVIGFAIGFV-FATTKP---LTDVQVVSIQNVLAS-------------------EQELMFD 351 (387)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHhh-hhcCcc---cccceEEEeeeeeec-------------------cceEEEe
Confidence 34566667788887776655554544443 334455 222222222322111 2235688
Q ss_pred EEEEEecCceeEEEEcCeEEEEEECCEEEe
Q 023930 149 LLFTAANPNKVGIKYGESKFTVMYRGIPLG 178 (275)
Q Consensus 149 ~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG 178 (275)
++|.+.|||.+.|..++.++.||-+-.-+|
T Consensus 352 l~V~A~NPn~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 352 LTVEAFNPNWFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred eEEEEECCCeEEEEeccceeeeEecCCccC
Confidence 899999999999999999999987654444
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.00 E-value=0.00033 Score=62.93 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=50.8
Q ss_pred ceEeEEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeecCc-eeecCCceEEEEEEEEE
Q 023930 141 ASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPG-FYQGAHSVRNVEATIAV 201 (275)
Q Consensus 141 ~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~vp~-F~q~~r~tt~v~~~v~~ 201 (275)
..+..++.-.|.++|||...+.-.++++.|.|....+|.+.... ...++++.+.+..++..
T Consensus 120 ~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 120 STVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred CEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 46788899999999999999999999999999999999987653 47777877766665554
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.63 E-value=0.0063 Score=51.13 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=67.3
Q ss_pred EEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeee-cCceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCce
Q 023930 145 LTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKAS-VPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDR 223 (275)
Q Consensus 145 ~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~-vp~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~ 223 (275)
..+-.++.++|||-+.|-...++..++-+|..+|.+. ..++..++++...+.+.+..+...+. +.+...++.+.+
T Consensus 50 ~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k----e~w~~hi~ngEr 125 (161)
T COG5608 50 TEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK----EWWVTHIENGER 125 (161)
T ss_pred eEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH----HHHHHHhhccCc
Confidence 4688889999999999999999999999999999976 66799999999999998887754433 445556653222
Q ss_pred EEEEEEEEEEEEEEEEEEE
Q 023930 224 VELRVLGDVSAKIRVMNFD 242 (275)
Q Consensus 224 V~l~v~~~v~~r~kvg~~~ 242 (275)
-+++ .++...+++|+..
T Consensus 126 s~Ir--~~i~~~v~vg~~d 142 (161)
T COG5608 126 STIR--VRIKGVVKVGGMD 142 (161)
T ss_pred ccEE--EEEEEEEEEccEE
Confidence 1233 3444445555443
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=97.14 E-value=0.015 Score=51.88 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=34.9
Q ss_pred cccceehhhHHHHHHHHHHHHHHHhheeeEeeCC--CCEEEEeEeEEe
Q 023930 72 SFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPK--KPQFDLQQVGVQ 117 (275)
Q Consensus 72 ~~~~cccc~~~~l~~l~ll~~~~~li~~lvlrP~--~P~f~V~~~~v~ 117 (275)
+|++||+|++.++++|+++++++++++|-.-+|+ .-.++|+++.+.
T Consensus 35 ~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~ 82 (219)
T PLN03160 35 NCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELI 82 (219)
T ss_pred cceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeec
Confidence 4444677777777777888888888888888884 667778777764
No 8
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=67.92 E-value=4 Score=26.21 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=2.6
Q ss_pred CCCCCC
Q 023930 41 PPPPPL 46 (275)
Q Consensus 41 ~~~~~~ 46 (275)
+|.|++
T Consensus 3 p~~Y~~ 8 (37)
T PF12734_consen 3 PPGYPQ 8 (37)
T ss_pred CCCCCC
Confidence 344444
No 9
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=66.06 E-value=45 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=27.0
Q ss_pred EEEEEEEEecCceeEEEEcCeEEEEEECCEEEeee
Q 023930 146 TIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKA 180 (275)
Q Consensus 146 ~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~ 180 (275)
.+.+..+++|-.+..+..=.+++++..++...++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNK 97 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCch
Confidence 46667889999888888888999998866555543
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=65.08 E-value=9.9 Score=34.64 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=17.6
Q ss_pred cceEeEEEEEEEEEecCc-eeEEE
Q 023930 140 SASLSLTIHLLFTAANPN-KVGIK 162 (275)
Q Consensus 140 ~~~L~~~l~~~v~~~NPN-k~~i~ 162 (275)
..++...=+++|+++||| ++.=+
T Consensus 103 ~l~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 103 PLYLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred ceEEEeccCeeEEccCCCCceeee
Confidence 356777788999999999 75433
No 11
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=64.72 E-value=58 Score=25.95 Aligned_cols=69 Identities=12% Similarity=0.271 Sum_probs=42.7
Q ss_pred EEeeeecCceeecCCce-EEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEEEEEEEEEEEeCCeEEEE
Q 023930 176 PLGKASVPGFYQGAHSV-RNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSV 250 (275)
Q Consensus 176 ~LG~~~vp~F~q~~r~t-t~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~~r~kvg~~~s~~~~v~V 250 (275)
.+|...+|+......++ ..+...+..... +.-.++.+++.....+.+.++++. ++++|++....+.++.
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~----~~f~~f~~~~~~~~~~~l~l~g~~--~~~~g~l~~~~i~~~k 71 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQ----DAFTQFVTALLFNEEVTLTLRGKT--DTHLGGLPFSGIPFDK 71 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCH----HHHHHHHHHHHhCCcEEEEEEEee--eEEEccEEEEEEeecc
Confidence 57888999999833233 334445554432 334566677655567888888885 6778877544444433
No 12
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=61.99 E-value=79 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=14.2
Q ss_pred EECCEEEee--eecCceeecCCceEEEEEEEE
Q 023930 171 MYRGIPLGK--ASVPGFYQGAHSVRNVEATIA 200 (275)
Q Consensus 171 ~Y~g~~LG~--~~vp~F~q~~r~tt~v~~~v~ 200 (275)
.|++..+|. ..+|+ +...+..+.+++.
T Consensus 71 ~~d~aeVGrreV~vp~---~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 71 DYDGAEVGRREVLVPP---SGERTVRVTVTVR 99 (112)
T ss_pred eCCCCEEEEEEEEECC---CCCcEEEEEEEEE
Confidence 367777885 55666 2233444444443
No 13
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.36 E-value=8.4 Score=33.49 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhheeeEeeCCCCEEEEeEeE
Q 023930 84 FSFIALLILAVVLIVFLAVKPKKPQFDLQQVG 115 (275)
Q Consensus 84 l~~l~ll~~~~~li~~lvlrP~~P~f~V~~~~ 115 (275)
+++|++.++++++++.+++.|+.+...+.+++
T Consensus 16 ~iLLAln~l~~~~i~~~vlsp~ee~t~~~~a~ 47 (197)
T COG4698 16 FILLALNTLLAVLIALFVLSPREEPTHLEDAS 47 (197)
T ss_pred HHHHHHHHHHHHHhheeeccCCCCCchhhccC
Confidence 33334444444667778899999777666554
No 14
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=58.73 E-value=4.4 Score=26.13 Aligned_cols=18 Identities=17% Similarity=0.735 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhheeeEee
Q 023930 86 FIALLILAVVLIVFLAVK 103 (275)
Q Consensus 86 ~l~ll~~~~~li~~lvlr 103 (275)
++++++.+..+|+|+++.
T Consensus 16 ~llflv~imliif~f~le 33 (43)
T PF11395_consen 16 FLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333334444456676554
No 15
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=55.57 E-value=13 Score=26.98 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhheeeEeeCC
Q 023930 86 FIALLILAVVLIVFLAVKPK 105 (275)
Q Consensus 86 ~l~ll~~~~~li~~lvlrP~ 105 (275)
+++++++++..+.|++.+|+
T Consensus 9 L~~avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 9 LVVAVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHHHHhhhceeEEEEECCC
Confidence 33345555677899999998
No 16
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=51.01 E-value=1.7e+02 Score=25.48 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=15.6
Q ss_pred eCCCCEEEEeEeEEeeeee
Q 023930 103 KPKKPQFDLQQVGVQYMGI 121 (275)
Q Consensus 103 rP~~P~f~V~~~~v~~f~l 121 (275)
.++.|.|.+.++....|+-
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~ 55 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNP 55 (192)
T ss_pred CCCCCCEEEeccEEEEECC
Confidence 4678999999998887764
No 17
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=50.59 E-value=1e+02 Score=24.98 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=30.4
Q ss_pred EEEEEEEEecCceeEEEEcCeEEEEE-ECCEEEeeeec
Q 023930 146 TIHLLFTAANPNKVGIKYGESKFTVM-YRGIPLGKASV 182 (275)
Q Consensus 146 ~l~~~v~~~NPNk~~i~Y~~~~~~V~-Y~g~~LG~~~v 182 (275)
.+.++.++.|-......|-.++++++ -+|..+..-.+
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 46777889999888899999999998 67888877554
No 18
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=50.51 E-value=12 Score=39.56 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=15.1
Q ss_pred CCCcccceehhhHHHHHHHHHHHHHH
Q 023930 69 SSASFRGCCCCLFLLFSFIALLILAV 94 (275)
Q Consensus 69 ~~~~~~~cccc~~~~l~~l~ll~~~~ 94 (275)
++..|+++||-++++++.+++++|++
T Consensus 133 ~~~~c~R~~l~~~L~~~~~~il~g~i 158 (806)
T PF05478_consen 133 KNDACRRGCLGILLLLLTLIILFGVI 158 (806)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665555565554
No 19
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.25 E-value=27 Score=37.95 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCc
Q 023930 17 SSQPKMPPQTQPNGTHHHQRRPHPPPPPPLQPQSQYHHHHDHHQYYP 63 (275)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~r 63 (275)
.|.|++++||-.+|. .++-.|.+.++|+|.+++..+.++...|.|+
T Consensus 768 ~s~~~~qpPt~~~g~-p~~p~p~p~~~~~p~~~s~~~p~~~stP~~~ 813 (1049)
T KOG0307|consen 768 MSRPPQQPPTSANGF-PYNPSPAPQPSYTPAPQSNARPNSASTPTPP 813 (1049)
T ss_pred ccCCCCCCCccccCC-CCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Confidence 334444555544666 3333444577788877776666666666654
No 20
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=48.90 E-value=5.7 Score=31.37 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 023930 42 PPPPLQPQ 49 (275)
Q Consensus 42 ~~~~~~~~ 49 (275)
..|-|.|.
T Consensus 5 ~sY~PLP~ 12 (106)
T PF11837_consen 5 YSYTPLPD 12 (106)
T ss_dssp --------
T ss_pred CccCCCCC
Confidence 34555444
No 21
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.49 E-value=7.9 Score=31.54 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhheeeEeeC-CCCEEEEeE
Q 023930 85 SFIALLILAVVLIVFLAVKP-KKPQFDLQQ 113 (275)
Q Consensus 85 ~~l~ll~~~~~li~~lvlrP-~~P~f~V~~ 113 (275)
.+++.++|+|+||+|++.|= |++...+..
T Consensus 72 gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 72 GVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34455566677777777654 455555544
No 22
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=48.13 E-value=23 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhheeeEeeC
Q 023930 81 FLLFSFIALLILAVVLIVFLAVKP 104 (275)
Q Consensus 81 ~~~l~~l~ll~~~~~li~~lvlrP 104 (275)
++.+.+..+++++.++.+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 444555567778888999999988
No 23
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=47.92 E-value=4.7 Score=28.64 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.6
Q ss_pred Hhheee
Q 023930 95 VLIVFL 100 (275)
Q Consensus 95 ~li~~l 100 (275)
+++.|+
T Consensus 54 ~~~~~~ 59 (60)
T PF06072_consen 54 ALVAWH 59 (60)
T ss_pred HHhhcc
Confidence 444443
No 24
>PRK05529 cell division protein FtsQ; Provisional
Probab=47.07 E-value=27 Score=31.77 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=11.4
Q ss_pred CCEEEEeEeEEeee
Q 023930 106 KPQFDLQQVGVQYM 119 (275)
Q Consensus 106 ~P~f~V~~~~v~~f 119 (275)
.|.|.|..+.|+.-
T Consensus 58 Sp~~~v~~I~V~Gn 71 (255)
T PRK05529 58 SPLLALRSIEVAGN 71 (255)
T ss_pred CCceEEEEEEEECC
Confidence 58999999998753
No 25
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=46.79 E-value=18 Score=33.21 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=10.5
Q ss_pred ceEeEEEEEEEEEecCc
Q 023930 141 ASLSLTIHLLFTAANPN 157 (275)
Q Consensus 141 ~~L~~~l~~~v~~~NPN 157 (275)
..+..+=+++++++|.|
T Consensus 82 l~i~s~~~v~~~~r~~~ 98 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNEN 98 (264)
T ss_pred EEEEecCceEEEEecCC
Confidence 34444445677778877
No 26
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=45.68 E-value=19 Score=25.28 Aligned_cols=20 Identities=30% Similarity=0.678 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhheeeEeeCC
Q 023930 86 FIALLILAVVLIVFLAVKPK 105 (275)
Q Consensus 86 ~l~ll~~~~~li~~lvlrP~ 105 (275)
++++++..+++++|+.-||+
T Consensus 37 ~l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 37 TLAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHHhheeEEeccCC
Confidence 34444455566788888885
No 27
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=45.33 E-value=29 Score=30.13 Aligned_cols=24 Identities=25% Similarity=0.568 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhheeeEeeCCCC
Q 023930 84 FSFIALLILAVVLIVFLAVKPKKP 107 (275)
Q Consensus 84 l~~l~ll~~~~~li~~lvlrP~~P 107 (275)
++++++++++++++++.++.|..+
T Consensus 8 ~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 8 LILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHhheeeEEEccCCC
Confidence 334455556666778889999866
No 28
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=45.03 E-value=20 Score=23.84 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhheeeEeeC
Q 023930 82 LLFSFIALLILAVVLIVFLAVKP 104 (275)
Q Consensus 82 ~~l~~l~ll~~~~~li~~lvlrP 104 (275)
+.+.+..+++++.++.+|..+-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 44445566777888899999987
No 29
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=44.82 E-value=1e+02 Score=23.55 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=37.8
Q ss_pred EeEEEEEEEEEecCce---eEEEEcCeEEEEEECCEEEe--eeecCceeecCCceEEEEEEEEEc
Q 023930 143 LSLTIHLLFTAANPNK---VGIKYGESKFTVMYRGIPLG--KASVPGFYQGAHSVRNVEATIAVD 202 (275)
Q Consensus 143 L~~~l~~~v~~~NPNk---~~i~Y~~~~~~V~Y~g~~LG--~~~vp~F~q~~r~tt~v~~~v~~~ 202 (275)
+.-++.+.+++.||.. -.+...=....++|.|.... .....-...+++++..+...+.-+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 4457889999999963 22333334556789997653 344566777888888888766633
No 30
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=44.65 E-value=81 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=14.0
Q ss_pred eeeEeeCCCCEEEEeEeEEe
Q 023930 98 VFLAVKPKKPQFDLQQVGVQ 117 (275)
Q Consensus 98 ~~lvlrP~~P~f~V~~~~v~ 117 (275)
-|+.-+++.|.+.+......
T Consensus 25 ~~l~~~~~pp~l~v~~~~~~ 44 (122)
T TIGR02588 25 DWLRYSNKAAVLEVAPAEVE 44 (122)
T ss_pred HhhccCCCCCeEEEeehhee
Confidence 45556678999988766544
No 31
>CHL00020 psbN photosystem II protein N
Probab=44.31 E-value=25 Score=23.36 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhheeeEeeC
Q 023930 81 FLLFSFIALLILAVVLIVFLAVKP 104 (275)
Q Consensus 81 ~~~l~~l~ll~~~~~li~~lvlrP 104 (275)
++.+.+..+++++..+.+|..+-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 344555566778888999999988
No 32
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=43.69 E-value=82 Score=26.78 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeEee
Q 023930 78 CCLFLLFSFIALLILAVVLIVFLAVK 103 (275)
Q Consensus 78 cc~~~~l~~l~ll~~~~~li~~lvlr 103 (275)
-|++++++++++++++.++.+|+..+
T Consensus 18 ~~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 18 LWILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34555555555555666666777653
No 33
>PHA02844 putative transmembrane protein; Provisional
Probab=42.94 E-value=13 Score=27.68 Aligned_cols=6 Identities=17% Similarity=0.689 Sum_probs=2.4
Q ss_pred Hhheee
Q 023930 95 VLIVFL 100 (275)
Q Consensus 95 ~li~~l 100 (275)
.+.+||
T Consensus 64 ~~flYL 69 (75)
T PHA02844 64 LTFLYL 69 (75)
T ss_pred HHHHHH
Confidence 334443
No 34
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=42.39 E-value=12 Score=30.07 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=7.2
Q ss_pred heeeEeeCCCC
Q 023930 97 IVFLAVKPKKP 107 (275)
Q Consensus 97 i~~lvlrP~~P 107 (275)
++|+.+||+.=
T Consensus 15 i~yf~iRPQkK 25 (113)
T PRK06531 15 LIFFMQRQQKK 25 (113)
T ss_pred HHHheechHHH
Confidence 35667999643
No 35
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=41.77 E-value=21 Score=18.36 Aligned_cols=10 Identities=30% Similarity=0.261 Sum_probs=5.4
Q ss_pred CCCCCCCCCC
Q 023930 41 PPPPPLQPQS 50 (275)
Q Consensus 41 ~~~~~~~~~~ 50 (275)
|..|+||.++
T Consensus 4 pqG~pPQ~~P 13 (15)
T PF02162_consen 4 PQGYPPQGYP 13 (15)
T ss_pred CcCCCCCCCC
Confidence 4555665554
No 36
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=41.47 E-value=35 Score=26.61 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=3.2
Q ss_pred eeeEeeC
Q 023930 98 VFLAVKP 104 (275)
Q Consensus 98 ~~lvlrP 104 (275)
.|+++|=
T Consensus 83 YFVILRe 89 (101)
T PF06024_consen 83 YFVILRE 89 (101)
T ss_pred EEEEEec
Confidence 4444553
No 37
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=41.32 E-value=21 Score=35.06 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=4.3
Q ss_pred ehhhHHHHHH
Q 023930 77 CCCLFLLFSF 86 (275)
Q Consensus 77 ccc~~~~l~~ 86 (275)
|||..+.+++
T Consensus 79 ~~c~~~sLii 88 (418)
T cd07912 79 ICCLKWSLVI 88 (418)
T ss_pred ccHHHHHHHH
Confidence 3454444433
No 38
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=41.20 E-value=24 Score=31.84 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=4.3
Q ss_pred hhhHHHHHH
Q 023930 78 CCLFLLFSF 86 (275)
Q Consensus 78 cc~~~~l~~ 86 (275)
||+|+.+++
T Consensus 228 ~~~~~~i~~ 236 (251)
T PF09753_consen 228 CWTWLMIFV 236 (251)
T ss_pred HHHHHHHHH
Confidence 555544443
No 39
>PF14927 Neurensin: Neurensin
Probab=40.53 E-value=43 Score=27.96 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 023930 80 LFLLFSFIALLILAVVLI 97 (275)
Q Consensus 80 ~~~~l~~l~ll~~~~~li 97 (275)
+.+++.+++|++|+++++
T Consensus 46 V~~i~g~l~Ll~Gi~~l~ 63 (140)
T PF14927_consen 46 VGFISGLLLLLLGIVALT 63 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555566665443
No 40
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=37.84 E-value=10 Score=25.23 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=5.5
Q ss_pred HhhhhhcCCCCCCCCCCCCCCC
Q 023930 6 EREMAATTPSSSSQPKMPPQTQ 27 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (275)
.|.||.--|.+.+-|-|||||+
T Consensus 4 ar~maehipp~P~rPAPpPPtQ 25 (47)
T PF04806_consen 4 ARNMAEHIPPTPNRPAPPPPTQ 25 (47)
T ss_dssp SSS--SS-----SS--------
T ss_pred hhhHHhcCCCCCCCCCCCCCCc
Confidence 4678888888888899999986
No 41
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=37.68 E-value=2.8e+02 Score=24.65 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred ceEeEEEEEEEEEecCceeEEEE--cCeEEEEEECCEEEee
Q 023930 141 ASLSLTIHLLFTAANPNKVGIKY--GESKFTVMYRGIPLGK 179 (275)
Q Consensus 141 ~~L~~~l~~~v~~~NPNk~~i~Y--~~~~~~V~Y~g~~LG~ 179 (275)
..+.+.-+.+|.++=|||+.+.+ +..+..++|+|..+.-
T Consensus 35 qklq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred ceEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEEE
Confidence 56788888999999999888887 4577889999977653
No 42
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=37.58 E-value=32 Score=30.98 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=9.6
Q ss_pred HHHHhheeeEeeC
Q 023930 92 LAVVLIVFLAVKP 104 (275)
Q Consensus 92 ~~~~li~~lvlrP 104 (275)
++++.+.|+.|||
T Consensus 236 l~~Ia~aW~~yRP 248 (248)
T PF07787_consen 236 LLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHhheeeCc
Confidence 3455578999998
No 43
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=37.15 E-value=23 Score=30.09 Aligned_cols=13 Identities=15% Similarity=0.700 Sum_probs=9.5
Q ss_pred HHHHhheeeEeeC
Q 023930 92 LAVVLIVFLAVKP 104 (275)
Q Consensus 92 ~~~~li~~lvlrP 104 (275)
+++++++|+.+||
T Consensus 16 ~~~~y~~W~~~rp 28 (157)
T PF06092_consen 16 ACILYFLWLTLRP 28 (157)
T ss_pred HHHHHhhhhccCC
Confidence 3333789999999
No 44
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.38 E-value=20 Score=25.59 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=8.2
Q ss_pred HhheeeEeeCCC
Q 023930 95 VLIVFLAVKPKK 106 (275)
Q Consensus 95 ~li~~lvlrP~~ 106 (275)
+.++|.+|||+.
T Consensus 23 iavi~~ayr~~~ 34 (60)
T COG4736 23 IAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHhcccc
Confidence 345677899963
No 45
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=36.24 E-value=20 Score=23.97 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=6.5
Q ss_pred hheeeEeeCCC
Q 023930 96 LIVFLAVKPKK 106 (275)
Q Consensus 96 li~~lvlrP~~ 106 (275)
.++|.+++|+.
T Consensus 24 gi~~w~~~~~~ 34 (49)
T PF05545_consen 24 GIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHcccc
Confidence 34555678863
No 46
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=36.23 E-value=70 Score=29.02 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023930 18 SQPKMPPQTQPNGTHHHQRRPHPPPPPPL 46 (275)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 46 (275)
+.|+|+.+.+-.|..+.+..|..-|++++
T Consensus 2 ~~pp~~~~~~~~~~~~~~g~~~~~~~~~~ 30 (237)
T KOG2322|consen 2 SGPPPPYPETSSGTGQNAGSPQDYPTPVP 30 (237)
T ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCC
Confidence 45666666666677777777666554333
No 47
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=36.15 E-value=18 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.483 Sum_probs=10.3
Q ss_pred HHHHHHhheeeEeeCCC
Q 023930 90 LILAVVLIVFLAVKPKK 106 (275)
Q Consensus 90 l~~~~~li~~lvlrP~~ 106 (275)
.++++++++|-.++|.+
T Consensus 8 ~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 8 AVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 33445566666788863
No 48
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=35.39 E-value=93 Score=24.76 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=20.9
Q ss_pred EEEEEEEEEecCceeEEEEcCeEEEE
Q 023930 145 LTIHLLFTAANPNKVGIKYGESKFTV 170 (275)
Q Consensus 145 ~~l~~~v~~~NPNk~~i~Y~~~~~~V 170 (275)
.++..++.+.||..+++..+++++.+
T Consensus 100 ~~~~~~~~l~NPS~~ti~lG~v~~~l 125 (125)
T PF12505_consen 100 INLNATVTLPNPSPLTIDLGNVTLNL 125 (125)
T ss_pred EEEEEEEEEcCCCeEEEEeccEEEeC
Confidence 56778888999999988888877653
No 49
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=35.33 E-value=94 Score=31.94 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHhhhhhcCCCCCCCCCCCCCCCCCCC
Q 023930 4 EREREMAATTPSSSSQPKMPPQTQPNGT 31 (275)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (275)
|-|+|+.+|.|+.+|-|-+.-..+++++
T Consensus 283 ~~e~~~~~~~~~p~~GPgdH~h~~~~~p 310 (757)
T KOG4368|consen 283 QMEAEVKATPPPPAPGPGPHDQIPPNKP 310 (757)
T ss_pred HHHHhhhccCCCCCCCCCcccccCCCCC
Confidence 6689999999988877766533333333
No 50
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.68 E-value=28 Score=36.92 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023930 81 FLLFSFIALLILAVVLI 97 (275)
Q Consensus 81 ~~~l~~l~ll~~~~~li 97 (275)
++.++++++++++++.+
T Consensus 141 ~l~~~L~~~~~~il~g~ 157 (806)
T PF05478_consen 141 CLGILLLLLTLIILFGV 157 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34443333333433333
No 51
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=34.28 E-value=31 Score=30.80 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHHHhheeeEeeCCCCEE
Q 023930 92 LAVVLIVFLAVKPKKPQF 109 (275)
Q Consensus 92 ~~~~li~~lvlrP~~P~f 109 (275)
|+.++..|-++||+....
T Consensus 173 gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 173 GGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hcceEEEEEEeccccccc
Confidence 333444455788875544
No 52
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=34.25 E-value=38 Score=28.67 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=12.6
Q ss_pred HHHHhheeeEeeCCCCEE
Q 023930 92 LAVVLIVFLAVKPKKPQF 109 (275)
Q Consensus 92 ~~~~li~~lvlrP~~P~f 109 (275)
+++++++|+.+|.++=.|
T Consensus 65 ~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 65 GILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHhheeEEEecccCcc
Confidence 455667888899986544
No 53
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=33.81 E-value=57 Score=34.37 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=12.2
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 023930 12 TTPSSSSQPKMPPQTQPNGTH 32 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (275)
+.+++-|+|+||++-.+....
T Consensus 274 s~~~S~s~ppppap~p~~~~~ 294 (830)
T KOG1923|consen 274 SQPGSGSGPPPPAPLPHTAQS 294 (830)
T ss_pred cCCCCCCCCCCCCCCCCcccc
Confidence 445666777777665444433
No 54
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=33.43 E-value=28 Score=36.84 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=0.0
Q ss_pred cccceeh-h----------------hHHHHHHHHHHHHHHHhhee
Q 023930 72 SFRGCCC-C----------------LFLLFSFIALLILAVVLIVF 99 (275)
Q Consensus 72 ~~~~ccc-c----------------~~~~l~~l~ll~~~~~li~~ 99 (275)
|||+||| | .++.+.+++++++.++.+++
T Consensus 128 ccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv~~ 172 (865)
T KOG4331|consen 128 CCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIELLIGVFR 172 (865)
T ss_pred heeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHHHHHHHHH
No 55
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.39 E-value=20 Score=33.64 Aligned_cols=15 Identities=27% Similarity=0.839 Sum_probs=9.4
Q ss_pred HHHHHHHhheeeEee
Q 023930 89 LLILAVVLIVFLAVK 103 (275)
Q Consensus 89 ll~~~~~li~~lvlr 103 (275)
+++.++++|+||+||
T Consensus 266 liIVLIMvIIYLILR 280 (299)
T PF02009_consen 266 LIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456667787766
No 56
>PHA02692 hypothetical protein; Provisional
Probab=31.73 E-value=22 Score=26.11 Aligned_cols=7 Identities=0% Similarity=-0.022 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 023930 79 CLFLLFS 85 (275)
Q Consensus 79 c~~~~l~ 85 (275)
|..++++
T Consensus 45 ~~~~ii~ 51 (70)
T PHA02692 45 WTTVFLI 51 (70)
T ss_pred hHHHHHH
Confidence 3333333
No 57
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=31.47 E-value=52 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhheeeEeeCCCCEEEE
Q 023930 82 LLFSFIALLILAVVLIVFLAVKPKKPQFDL 111 (275)
Q Consensus 82 ~~l~~l~ll~~~~~li~~lvlrP~~P~f~V 111 (275)
+++.+|+||++.++.++|.+-+-..-+|++
T Consensus 14 igi~Ll~lLl~cgiGcvwhwkhr~~~~ftL 43 (158)
T PF11770_consen 14 IGISLLLLLLLCGIGCVWHWKHRDSTRFTL 43 (158)
T ss_pred HHHHHHHHHHHHhcceEEEeeccCccccch
Confidence 333344444444556788776654344443
No 58
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=30.86 E-value=16 Score=29.37 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHhheeeEeeC
Q 023930 88 ALLILAVVLIVFLAVKP 104 (275)
Q Consensus 88 ~ll~~~~~li~~lvlrP 104 (275)
+||+|-+ +.+|++|.=
T Consensus 43 LLiAGQa-~TaYfv~~Q 58 (114)
T PF09307_consen 43 LLIAGQA-VTAYFVFQQ 58 (114)
T ss_dssp -----------------
T ss_pred HHHHhHH-HHHHHHHHh
Confidence 3444444 456777664
No 59
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=29.55 E-value=2.2e+02 Score=20.59 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=30.3
Q ss_pred EEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeecCceeecCCceEEEEEEEE
Q 023930 146 TIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIA 200 (275)
Q Consensus 146 ~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~vp~F~q~~r~tt~v~~~v~ 200 (275)
.+.+++.++|--... -+...+.++.+|..++...++.+. ++.+..+...+.
T Consensus 20 ~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~~L~--~g~~~~v~~~~~ 70 (101)
T PF07705_consen 20 PVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIPSLA--PGESETVTFTWT 70 (101)
T ss_dssp EEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEECCcC--CCcEEEEEEEEE
Confidence 567777899975322 335667777788888777775444 344555554444
No 60
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.37 E-value=38 Score=32.86 Aligned_cols=19 Identities=11% Similarity=0.405 Sum_probs=10.6
Q ss_pred HHHHHHHHHhheeeEe-eCC
Q 023930 87 IALLILAVVLIVFLAV-KPK 105 (275)
Q Consensus 87 l~ll~~~~~li~~lvl-rP~ 105 (275)
|+-.++|+.+++|+|| .||
T Consensus 34 LIQ~LIIlgLVLFmVYGn~h 53 (442)
T PF06637_consen 34 LIQFLIILGLVLFMVYGNVH 53 (442)
T ss_pred HHHHHHHHHHHHHHhhCCcc
Confidence 3334455566777777 443
No 61
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=29.36 E-value=1.4e+02 Score=33.11 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=3.1
Q ss_pred CCCCCC
Q 023930 18 SQPKMP 23 (275)
Q Consensus 18 ~~~~~~ 23 (275)
|+|+|+
T Consensus 1414 s~~~p~ 1419 (1591)
T KOG3514|consen 1414 SKPAPR 1419 (1591)
T ss_pred cCCCCC
Confidence 455554
No 62
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.70 E-value=92 Score=30.98 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=4.0
Q ss_pred cCCCCCCC
Q 023930 55 HHDHHQYY 62 (275)
Q Consensus 55 ~~~~~p~~ 62 (275)
||.+.|.|
T Consensus 475 ~q~q~~~y 482 (483)
T KOG2236|consen 475 NQMQNPSY 482 (483)
T ss_pred hcccCCCC
Confidence 44555555
No 63
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=28.34 E-value=43 Score=23.52 Aligned_cols=9 Identities=0% Similarity=0.231 Sum_probs=6.4
Q ss_pred EeeCCCCEE
Q 023930 101 AVKPKKPQF 109 (275)
Q Consensus 101 vlrP~~P~f 109 (275)
.|-|+.|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 477887766
No 64
>PRK01844 hypothetical protein; Provisional
Probab=28.29 E-value=54 Score=24.25 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 023930 79 CLFLLFSFIALLILAVVL 96 (275)
Q Consensus 79 c~~~~l~~l~ll~~~~~l 96 (275)
|++.++.++++++|+++.
T Consensus 4 ~~~I~l~I~~li~G~~~G 21 (72)
T PRK01844 4 WLGILVGVVALVAGVALG 21 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445555555443
No 65
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=27.83 E-value=39 Score=22.86 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=5.6
Q ss_pred heeeEeeCC
Q 023930 97 IVFLAVKPK 105 (275)
Q Consensus 97 i~~lvlrP~ 105 (275)
+++.+|+|+
T Consensus 26 iv~wa~~p~ 34 (48)
T cd01324 26 VVVWAFRPG 34 (48)
T ss_pred HHHHHhCCC
Confidence 444478885
No 66
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=26.46 E-value=16 Score=21.68 Aligned_cols=17 Identities=6% Similarity=0.415 Sum_probs=10.1
Q ss_pred HHHHHHhheeeEeeCCC
Q 023930 90 LILAVVLIVFLAVKPKK 106 (275)
Q Consensus 90 l~~~~~li~~lvlrP~~ 106 (275)
.++++++++|-.+||.+
T Consensus 7 ~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 7 AVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHhCHHh
Confidence 33445556666788853
No 67
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.19 E-value=2e+02 Score=24.15 Aligned_cols=15 Identities=7% Similarity=-0.226 Sum_probs=8.5
Q ss_pred EEEcCeEEEEEECCE
Q 023930 161 IKYGESKFTVMYRGI 175 (275)
Q Consensus 161 i~Y~~~~~~V~Y~g~ 175 (275)
-+|=.+++++.+.+.
T Consensus 78 ~rylkv~i~L~~~~~ 92 (162)
T PRK07021 78 DRVLYVGLTLRLPDE 92 (162)
T ss_pred ceEEEEEEEEEECCH
Confidence 455555666655554
No 68
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=25.54 E-value=47 Score=20.24 Aligned_cols=16 Identities=6% Similarity=0.492 Sum_probs=9.6
Q ss_pred HHHHHhheeeEeeCCC
Q 023930 91 ILAVVLIVFLAVKPKK 106 (275)
Q Consensus 91 ~~~~~li~~lvlrP~~ 106 (275)
+++.++++|-.+||.+
T Consensus 13 ~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 13 LGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHhCccc
Confidence 3444555666688863
No 69
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.48 E-value=28 Score=30.17 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.9
Q ss_pred heeeEeeCC
Q 023930 97 IVFLAVKPK 105 (275)
Q Consensus 97 i~~lvlrP~ 105 (275)
+.|+.+...
T Consensus 37 ~~~~~~~~~ 45 (182)
T PRK08455 37 IAMLLMGSK 45 (182)
T ss_pred HHHHHhcCC
Confidence 344444443
No 70
>PHA03030 hypothetical protein; Provisional
Probab=25.47 E-value=56 Score=25.90 Aligned_cols=12 Identities=33% Similarity=1.126 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHH
Q 023930 79 CLFLLFSFIALL 90 (275)
Q Consensus 79 c~~~~l~~l~ll 90 (275)
|+|++++|++++
T Consensus 3 ci~~ili~lfif 14 (122)
T PHA03030 3 CIFLILIFLFIF 14 (122)
T ss_pred eehHHHHHHHHH
Confidence 455655554443
No 71
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=25.33 E-value=1e+02 Score=35.80 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=5.4
Q ss_pred CCCCCccC
Q 023930 58 HHQYYPTT 65 (275)
Q Consensus 58 ~~p~~r~~ 65 (275)
..|.|||.
T Consensus 1723 ~~P~YRPE 1730 (2039)
T PRK15319 1723 VAPQYRAD 1730 (2039)
T ss_pred CcccccCc
Confidence 45778774
No 72
>PHA02642 C-type lectin-like protein; Provisional
Probab=24.94 E-value=60 Score=29.03 Aligned_cols=9 Identities=0% Similarity=-0.090 Sum_probs=4.2
Q ss_pred eeeeccccc
Q 023930 262 SLTYKQCGF 270 (275)
Q Consensus 262 ~~~~~~C~~ 270 (275)
.+.+..|..
T Consensus 184 ~i~s~~C~~ 192 (216)
T PHA02642 184 RISSSRVYA 192 (216)
T ss_pred ceEccCcCC
Confidence 344445544
No 73
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.73 E-value=1.3e+02 Score=28.86 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023930 33 HHQRRPHPPPPPPLQPQS 50 (275)
Q Consensus 33 ~~~~~p~~~~~~~~~~~~ 50 (275)
..+.+|+-||+|+++..+
T Consensus 167 ~~~~~~p~p~p~~~~gas 184 (365)
T KOG2391|consen 167 GSAYKPPLPPPPPPGGAS 184 (365)
T ss_pred CcCcCCCCCCCCCCCccc
Confidence 344555556666666654
No 74
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=23.93 E-value=79 Score=25.28 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=15.5
Q ss_pred EEEEecCc-----eeEEEEcCe--EEEEEECC
Q 023930 150 LFTAANPN-----KVGIKYGES--KFTVMYRG 174 (275)
Q Consensus 150 ~v~~~NPN-----k~~i~Y~~~--~~~V~Y~g 174 (275)
++-+.||| .+.++||+. .+.|.|+|
T Consensus 54 t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~ 85 (109)
T PF06129_consen 54 TVLFLNPDKPVSSQVILYYDSRSGTVTVAYKN 85 (109)
T ss_pred eEEecCCCcccccceEEEEccCCCeEEEEECC
Confidence 35577887 267777653 35666665
No 75
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=23.92 E-value=90 Score=28.38 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=21.8
Q ss_pred HHHHHhheeeEeeCCCCEEEEeEeEEee
Q 023930 91 ILAVVLIVFLAVKPKKPQFDLQQVGVQY 118 (275)
Q Consensus 91 ~~~~~li~~lvlrP~~P~f~V~~~~v~~ 118 (275)
+++.++++|...-+..|.|.+..+.|++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 42 LLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHheehhhhcCCccceEEEEec
Confidence 3444567788888888999999998874
No 76
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=23.81 E-value=2.4e+02 Score=23.10 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=31.8
Q ss_pred eEEEEEEEEEecCc-eeEEEEcCeEEEEEE--CCEEEeeeecCceeecCCceEEEE
Q 023930 144 SLTIHLLFTAANPN-KVGIKYGESKFTVMY--RGIPLGKASVPGFYQGAHSVRNVE 196 (275)
Q Consensus 144 ~~~l~~~v~~~NPN-k~~i~Y~~~~~~V~Y--~g~~LG~~~vp~F~q~~r~tt~v~ 196 (275)
..+|+++|++||-+ +-.|+-...+ || +|..|-...-.+.+.++-.+..+-
T Consensus 22 ~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 22 PFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred eEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 46789999999998 6555433221 33 456666555566777776666554
No 77
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.54 E-value=91 Score=30.62 Aligned_cols=17 Identities=47% Similarity=0.774 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q 023930 34 HQRRPHPPPPPPLQPQS 50 (275)
Q Consensus 34 ~~~~p~~~~~~~~~~~~ 50 (275)
.++.|+++||.+|.+-+
T Consensus 529 ~qr~PpppaP~rpp~~~ 545 (563)
T KOG1785|consen 529 PQRDPPPPAPPRPPRLS 545 (563)
T ss_pred cccCCCCCCCCCCCCCC
Confidence 34556555655554443
No 78
>PRK00523 hypothetical protein; Provisional
Probab=23.40 E-value=75 Score=23.51 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 023930 80 LFLLFSFIALLILAVV 95 (275)
Q Consensus 80 ~~~~l~~l~ll~~~~~ 95 (275)
++++++++++++|+++
T Consensus 6 l~I~l~i~~li~G~~~ 21 (72)
T PRK00523 6 LALGLGIPLLIVGGII 21 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444445555443
No 79
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.28 E-value=27 Score=32.76 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=6.6
Q ss_pred cccceehhhHHHHH
Q 023930 72 SFRGCCCCLFLLFS 85 (275)
Q Consensus 72 ~~~~cccc~~~~l~ 85 (275)
.|+.++||+.++++
T Consensus 271 k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 271 KIIIIIILIIIIVV 284 (297)
T ss_pred eeeeehHHHHHHHH
Confidence 33435555544443
No 80
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.90 E-value=73 Score=20.87 Aligned_cols=7 Identities=14% Similarity=0.467 Sum_probs=3.2
Q ss_pred heeeEee
Q 023930 97 IVFLAVK 103 (275)
Q Consensus 97 i~~lvlr 103 (275)
++|+++|
T Consensus 31 ~l~~~~r 37 (40)
T PF08693_consen 31 FLFFWYR 37 (40)
T ss_pred HhheEEe
Confidence 3444454
No 81
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=22.81 E-value=40 Score=26.92 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=9.0
Q ss_pred HhheeeEeeCC--CCEEEE
Q 023930 95 VLIVFLAVKPK--KPQFDL 111 (275)
Q Consensus 95 ~li~~lvlrP~--~P~f~V 111 (275)
++++||++-=+ .|.|.|
T Consensus 10 ~li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 10 ALIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHHccccCceEEEE
Confidence 35666654333 466654
No 82
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.79 E-value=79 Score=32.16 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhee--eEeeCCCCE
Q 023930 86 FIALLILAVVLIVF--LAVKPKKPQ 108 (275)
Q Consensus 86 ~l~ll~~~~~li~~--lvlrP~~P~ 108 (275)
++++++++++++|| +.|++-.|.
T Consensus 17 vvv~i~~ilv~if~~~~~y~~a~~~ 41 (548)
T COG2268 17 VVVVILVILVLIFFGKRFYIIARPN 41 (548)
T ss_pred HHHHHHHHHHHHHHhheeEEecCCC
Confidence 33344444555566 567765543
No 83
>PF01445 SH: Viral small hydrophobic protein; InterPro: IPR001477 The mumps virus SH protein is a membrane protein and not essential for virus growth []. Its function is unknown.; GO: 0016020 membrane
Probab=22.78 E-value=45 Score=23.24 Aligned_cols=9 Identities=33% Similarity=0.718 Sum_probs=3.9
Q ss_pred HHHHhheee
Q 023930 92 LAVVLIVFL 100 (275)
Q Consensus 92 ~~~~li~~l 100 (275)
.++.+.+|+
T Consensus 20 liiTLyVwi 28 (57)
T PF01445_consen 20 LIITLYVWI 28 (57)
T ss_pred HHHHHHHHH
Confidence 333444454
No 84
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.55 E-value=33 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=7.5
Q ss_pred HHHHHHHhheeeEee
Q 023930 89 LLILAVVLIVFLAVK 103 (275)
Q Consensus 89 ll~~~~~li~~lvlr 103 (275)
++++++.+++|.+||
T Consensus 11 v~v~Ivclliya~Yr 25 (70)
T PHA02902 11 VIVIIFCLLIYAAYK 25 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555555
No 85
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=53 Score=31.57 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=7.8
Q ss_pred HHHHhheeeEee
Q 023930 92 LAVVLIVFLAVK 103 (275)
Q Consensus 92 ~~~~li~~lvlr 103 (275)
+++..|+|+++.
T Consensus 240 lILF~I~~il~~ 251 (372)
T KOG2927|consen 240 LILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHhC
Confidence 455567777776
No 86
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.17 E-value=74 Score=29.43 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHHH
Q 023930 78 CCLFLLFSFIALLIL 92 (275)
Q Consensus 78 cc~~~~l~~l~ll~~ 92 (275)
|++.++++++.++++
T Consensus 246 ~~ll~v~~~v~lii~ 260 (269)
T KOG0811|consen 246 CILLLVGGPVGLIIG 260 (269)
T ss_pred hhhhHHHHHHHHHHH
Confidence 444444443333333
No 87
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=21.35 E-value=43 Score=26.18 Aligned_cols=10 Identities=30% Similarity=0.922 Sum_probs=6.4
Q ss_pred heeeEeeCCC
Q 023930 97 IVFLAVKPKK 106 (275)
Q Consensus 97 i~~lvlrP~~ 106 (275)
..|+++||+.
T Consensus 22 fyFli~RPQr 31 (97)
T COG1862 22 FYFLIIRPQR 31 (97)
T ss_pred HHHhhcCHHH
Confidence 3445899963
No 88
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.98 E-value=40 Score=26.89 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=5.4
Q ss_pred eeeEeeCC
Q 023930 98 VFLAVKPK 105 (275)
Q Consensus 98 ~~lvlrP~ 105 (275)
.|+.+||+
T Consensus 18 yF~~iRPQ 25 (109)
T PRK05886 18 MYFASRRQ 25 (109)
T ss_pred HHHHccHH
Confidence 44568995
No 89
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents a conserved octapeptide in the immediate N-terminal domain, which contains the phosphorylated serine residue.
Probab=20.95 E-value=61 Score=19.90 Aligned_cols=16 Identities=50% Similarity=1.016 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 023930 27 QPNGTHHHQRRPHPPP 42 (275)
Q Consensus 27 ~~~~~~~~~~~p~~~~ 42 (275)
-|||+-++-++|.+++
T Consensus 17 LPnGYm~dl~rp~p~~ 32 (32)
T PF10581_consen 17 LPNGYMSDLQRPDPPP 32 (32)
T ss_pred CCcchhcccCCCCCCC
Confidence 3799999999988764
No 90
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.82 E-value=62 Score=30.18 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=6.7
Q ss_pred HHHHHHHHHhheeeE
Q 023930 87 IALLILAVVLIVFLA 101 (275)
Q Consensus 87 l~ll~~~~~li~~lv 101 (275)
++|.+.+++|.+||.
T Consensus 269 lil~vvliiLYiWly 283 (295)
T TIGR01478 269 IILTVVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444555553
No 91
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=20.77 E-value=79 Score=24.01 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCCCccC
Q 023930 59 HQYYPTT 65 (275)
Q Consensus 59 ~p~~r~~ 65 (275)
+|.|...
T Consensus 13 pp~ysa~ 19 (93)
T PF08999_consen 13 PPDYSAA 19 (93)
T ss_dssp -------
T ss_pred CCccccC
Confidence 4445443
No 92
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=20.74 E-value=84 Score=25.03 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeEeeCCCCEEEE
Q 023930 78 CCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDL 111 (275)
Q Consensus 78 cc~~~~l~~l~ll~~~~~li~~lvlrP~~P~f~V 111 (275)
|++.++++.+.++ .+-+++.|++.++..|.+.+
T Consensus 3 ~~l~~~~~~~~~~-~~~~~vt~~l~~~~~p~iV~ 35 (111)
T PF09677_consen 3 RWLVIVLLAVAAL-LLSAWVTWLLASQPQPRIVT 35 (111)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHhcCCCceEE
Confidence 4544444333222 22234556666766675543
No 93
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=20.50 E-value=70 Score=20.11 Aligned_cols=8 Identities=25% Similarity=0.766 Sum_probs=3.5
Q ss_pred HHHhheee
Q 023930 93 AVVLIVFL 100 (275)
Q Consensus 93 ~~~li~~l 100 (275)
+.++++|+
T Consensus 17 ~~ILvFWf 24 (34)
T PF08113_consen 17 AFILVFWF 24 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444553
No 94
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.50 E-value=3.5e+02 Score=23.62 Aligned_cols=7 Identities=0% Similarity=0.263 Sum_probs=2.7
Q ss_pred hheeeEe
Q 023930 96 LIVFLAV 102 (275)
Q Consensus 96 li~~lvl 102 (275)
+++|=.|
T Consensus 178 ff~~KF~ 184 (186)
T PF05283_consen 178 FFLYKFC 184 (186)
T ss_pred HHHhhhc
Confidence 3344333
No 95
>PHA03049 IMV membrane protein; Provisional
Probab=20.38 E-value=42 Score=24.43 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhheeeEeeC
Q 023930 85 SFIALLILAVVLIVFLAVKP 104 (275)
Q Consensus 85 ~~l~ll~~~~~li~~lvlrP 104 (275)
+++++.++++++|+|-+|+=
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444455566677766653
No 96
>PF14828 Amnionless: Amnionless
Probab=20.37 E-value=62 Score=31.94 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=8.0
Q ss_pred HhheeeEeeCCCCEE
Q 023930 95 VLIVFLAVKPKKPQF 109 (275)
Q Consensus 95 ~li~~lvlrP~~P~f 109 (275)
++++|+.+.|+.|.+
T Consensus 355 ~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 355 FGVILLYRLPRNPSL 369 (437)
T ss_pred HHhheEEeccccccc
Confidence 334455555666655
No 97
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=20.23 E-value=85 Score=35.08 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=18.1
Q ss_pred CceEEEEEEEEEEEEEEE---EEEEeCCeEEEEEEE
Q 023930 221 NDRVELRVLGDVSAKIRV---MNFDSPGVQVSVDCA 253 (275)
Q Consensus 221 ~g~V~l~v~~~v~~r~kv---g~~~s~~~~v~V~C~ 253 (275)
+|.+.+-.+.-++..+++ |.+.+....+.+.|.
T Consensus 319 n~i~rii~r~pi~~ey~vafp~lynsrprsvav~~y 354 (2365)
T COG5178 319 NGIVRIIRRPPIDDEYPVAFPGLYNSRPRSVAVECY 354 (2365)
T ss_pred cceeeEEEeCCcCCccccccchhhcCcccceeeecc
Confidence 455555555555555553 235566666666664
No 98
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=20.13 E-value=96 Score=29.01 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=6.0
Q ss_pred HHHhheeeEee
Q 023930 93 AVVLIVFLAVK 103 (275)
Q Consensus 93 ~~~li~~lvlr 103 (275)
++++|.|++||
T Consensus 289 ~i~~Ig~~ifK 299 (305)
T PF04639_consen 289 LIVFIGYFIFK 299 (305)
T ss_pred HHHHhhheeeE
Confidence 34455666665
No 99
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.03 E-value=67 Score=27.14 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=12.1
Q ss_pred HHHHHHHHHhheeeEeeCCCC
Q 023930 87 IALLILAVVLIVFLAVKPKKP 107 (275)
Q Consensus 87 l~ll~~~~~li~~lvlrP~~P 107 (275)
+++++++++++.|..-|=++-
T Consensus 39 vVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 39 VVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHhhhhHHH
Confidence 344455566677766665543
Done!