Query 023930
Match_columns 275
No_of_seqs 158 out of 873
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.5 1.9E-06 6.5E-11 73.0 12.4 103 105-233 43-146 (174)
2 1xo8_A AT1G01470; structural g 98.2 1E-06 3.5E-11 73.0 5.0 103 105-233 20-123 (151)
3 3but_A Uncharacterized protein 97.9 9.2E-05 3.2E-09 60.2 10.9 64 145-208 18-82 (136)
4 3j1r_A Archaeal adhesion filam 43.6 7.9 0.00027 22.0 0.9 8 94-101 17-24 (26)
5 1jvr_A HTLV-II MA, MA, human T 33.7 67 0.0023 25.0 5.0 15 33-47 117-131 (137)
6 3kdp_B Sodium/potassium-transp 30.7 23 0.00077 31.7 2.2 27 87-114 29-55 (286)
7 2knc_B Integrin beta-3; transm 28.5 33 0.0011 24.6 2.4 21 80-100 13-33 (79)
8 3p5s_A CD38 molecule; cyclic A 23.7 17 0.00057 32.5 0.0 11 222-232 194-204 (278)
9 2l0d_A Cell surface protein; s 23.3 2.4E+02 0.0083 21.3 9.7 47 146-197 20-67 (114)
10 3ixz_B Potassium-transporting 22.5 33 0.0011 30.7 1.7 22 90-111 54-75 (290)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.47 E-value=1.9e-06 Score=73.04 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeecC-
Q 023930 105 KKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVP- 183 (275)
Q Consensus 105 ~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~vp- 183 (275)
+.|++++.++++..+.+.. ++|.+.|++.|||.+.+.+..++..+.-+|..|+++..+
T Consensus 43 ~~PeV~v~~v~~~~~~l~~---------------------~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~ 101 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG---------------------VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPD 101 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS---------------------EEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESC
T ss_pred CCCEEEEEEeEEeccccce---------------------EEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCC
Confidence 6899999999988654332 678899999999999999999999999999999998876
Q ss_pred ceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEE
Q 023930 184 GFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVS 233 (275)
Q Consensus 184 ~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~ 233 (275)
++..++++++.+.+.+...- .+...+.+++.....++.++++.+.
T Consensus 102 ~~tIpa~g~~~v~Vpv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 102 PGSLVGSGTTVLDVPVKVAY-----SIAVSLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp CCBCCSSEEEEEEEEEEESH-----HHHHHTCCCCCSSEEECEEEEEEEE
T ss_pred CceECCCCcEEEEEEEEEEH-----HHHHHHHHhcCCCCccceEEEEEEE
Confidence 59999999999999888763 2334555666555678887777554
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.22 E-value=1e-06 Score=72.96 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeecC-
Q 023930 105 KKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVP- 183 (275)
Q Consensus 105 ~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~vp- 183 (275)
+.|++++.++++..+.. ...++.+.+++.|||.+.+.+..++..+.-+|..|+++..+
T Consensus 20 ~~P~v~v~~v~~~~~~~---------------------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~ 78 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR---------------------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPD 78 (151)
T ss_dssp CSCCCBCSEEEECCCTT---------------------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEE
T ss_pred CCCEEEEEEeEEeccCc---------------------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCC
Confidence 57888888887764322 23578899999999999999999999999999999998876
Q ss_pred ceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEE
Q 023930 184 GFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVS 233 (275)
Q Consensus 184 ~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~ 233 (275)
++..++++++.+.+.+...- .+...+..++.....++.++++++.
T Consensus 79 ~~~ipa~g~~~v~vpv~v~~-----~~l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 79 PGSLKAKDMTALDIPVVVPY-----SILFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp CCCCSSSSEEEEEECCCEEH-----HHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred CcEECCCCcEEEEEEEEEEH-----HHHHHHHHhcccCCcccEEEEEEEE
Confidence 69999999999998877763 2334444554333578888877665
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.92 E-value=9.2e-05 Score=60.16 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=57.3
Q ss_pred EEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeee-cCceeecCCceEEEEEEEEEcccccch
Q 023930 145 LTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKAS-VPGFYQGAHSVRNVEATIAVDRANLMQ 208 (275)
Q Consensus 145 ~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~-vp~F~q~~r~tt~v~~~v~~~~~~l~~ 208 (275)
..|.+.+.+.|||.+.+.++.+...|+.+|..||++. ...+..++.+.+.+.+.+..+...+..
T Consensus 18 t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~ 82 (136)
T 3but_A 18 TEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE 82 (136)
T ss_dssp EEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT
T ss_pred EEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH
Confidence 6799999999999999999999999999999999976 678999999999999999988665553
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=43.63 E-value=7.9 Score=21.96 Aligned_cols=8 Identities=0% Similarity=0.285 Sum_probs=3.4
Q ss_pred HHhheeeE
Q 023930 94 VVLIVFLA 101 (275)
Q Consensus 94 ~~li~~lv 101 (275)
++.++|++
T Consensus 17 aaVllylW 24 (26)
T 3j1r_A 17 AAVLLYTW 24 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344443
No 5
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=33.66 E-value=67 Score=24.98 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCC
Q 023930 33 HHQRRPHPPPPPPLQ 47 (275)
Q Consensus 33 ~~~~~p~~~~~~~~~ 47 (275)
-...+||.+|+|.-+
T Consensus 117 P~~~~~~~PPPY~ep 131 (137)
T 1jvr_A 117 PPSPEAHVPPPYVEP 131 (137)
T ss_dssp CSSSCCSCCCCCCCS
T ss_pred CCcccccCCCCCCCc
Confidence 344566667766543
No 6
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=30.74 E-value=23 Score=31.72 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=17.2
Q ss_pred HHHHHHHHHhheeeEeeCCCCEEEEeEe
Q 023930 87 IALLILAVVLIVFLAVKPKKPQFDLQQV 114 (275)
Q Consensus 87 l~ll~~~~~li~~lvlrP~~P~f~V~~~ 114 (275)
|+.++++.+.++++.+-++.|+++ +..
T Consensus 29 La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 29 LAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp HHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred HHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 333444445566666899999998 443
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.53 E-value=33 Score=24.60 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHhheee
Q 023930 80 LFLLFSFIALLILAVVLIVFL 100 (275)
Q Consensus 80 ~~~~l~~l~ll~~~~~li~~l 100 (275)
+++.++..++++|++++++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555666666664
No 8
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=23.70 E-value=17 Score=32.47 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=6.6
Q ss_pred ceEEEEEEEEE
Q 023930 222 DRVELRVLGDV 232 (275)
Q Consensus 222 g~V~l~v~~~v 232 (275)
|.|.+-+.+..
T Consensus 194 G~V~VmLNGS~ 204 (278)
T 3p5s_A 194 NTVRVVLNGSL 204 (278)
T ss_dssp SEEEEEEETTS
T ss_pred CeEEEEEcCCC
Confidence 56666665554
No 9
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=23.33 E-value=2.4e+02 Score=21.26 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=30.4
Q ss_pred EEEEEEEEecCc-eeEEEEcCeEEEEEECCEEEeeeecCceeecCCceEEEEE
Q 023930 146 TIHLLFTAANPN-KVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEA 197 (275)
Q Consensus 146 ~l~~~v~~~NPN-k~~i~Y~~~~~~V~Y~g~~LG~~~vp~F~q~~r~tt~v~~ 197 (275)
...+++.++|.- ... ..+.+.++.+|..++...+++.--+ .++.+.+
T Consensus 20 ~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~LaaG--~s~tv~~ 67 (114)
T 2l0d_A 20 VNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSLESE--NSTNVDF 67 (114)
T ss_dssp EEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCBCBT--CEEEEEE
T ss_pred eEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceecccccCC--CEEEEEE
Confidence 456777899985 321 4577778779998888877664333 3444443
No 10
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=22.51 E-value=33 Score=30.67 Aligned_cols=22 Identities=9% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHhheeeEeeCCCCEEEE
Q 023930 90 LILAVVLIVFLAVKPKKPQFDL 111 (275)
Q Consensus 90 l~~~~~li~~lvlrP~~P~f~V 111 (275)
++++.+.+++..+.|+.|++.-
T Consensus 54 lFa~~m~v~l~Tld~~~Pkyqd 75 (290)
T 3ixz_B 54 IFALCIYVLMRTIDPYTPDYQD 75 (290)
T ss_pred HHHHHHHHHHHhCCCCCCCccc
Confidence 3444455566678899999863
Done!