BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023932
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 103/159 (64%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
+QW+PGH+AK +E+ ++LKL+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D
Sbjct: 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
A W +F QG + + N G G ++ +K + + + R+KG+ PRA+R
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
A I+G PNVGKS+LINRL K+ + RPG+T ++V
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
+ WYPGHI K ++++KD L+L++ V+EVRDAR P +T+ +D ++ I++LN+ D+
Sbjct: 1 MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
W +F KQG +VI ++ K V +K+ S R R
Sbjct: 59 ADEKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLAR 101
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
IVG PN GKS++IN+L +R +PG+T+ +++ S
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 26/35 (74%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256
IVG PNVGKSSL NRLLK+R A PGVTR LK
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK 40
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 192 KLSRLAKALASDVNVKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250
+L R+ + L ++ K+ G LL R +R IVG PNVGKS+L+NRLL PG
Sbjct: 219 RLERIKEKLTEEL--KKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276
Query: 251 VTR 253
TR
Sbjct: 277 TTR 279
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 212 GLLPRAVRAG-----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
GL+PR G IVG PNVGKS++ NR+ R+ PGVTR Y S
Sbjct: 13 GLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS 65
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
++G PNVGKSSL+N +L + G TR
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTR 231
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
SK + A++ IVG PNVGKS+L N +L + +P PG TR
Sbjct: 173 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
IVG PNVGKS+L N+L+K++ GVTR
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR 37
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
IVG PNVGKS+L+N LL ++ P +PRP TR
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR 43
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
IVG PNVGKS++ NR+ R+ PGVTR Y S
Sbjct: 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS 45
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
++G PNVGKSSL+N L + G TR
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTR 211
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 139 PLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAKQ-GTK---VIFSNGQLGMGT 190
P + +++GN K +LV N+ D+I + ++ W Y AKQ G K V + G G
Sbjct: 88 PGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGI 147
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
+L A + R K + +VG NVGKS+ INR +K
Sbjct: 148 AEL-------ADAIEYYRGGKDVY-------VVGCTNVGKSTFINRXIKE 183
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
IVG PNVGKS+L+N LL ++ +P+ G TR+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM 46
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
IVG PNVGKS+L+N LL ++ +P+ G TR+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM 47
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFL 263
++ V I G PN GKS+L+N LL + + PG TR Y+ + F+
Sbjct: 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTR--DYIEECFI 277
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
P VG NVGKSSL+N L R++ + PG TR + +
Sbjct: 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF 63
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
IVG PNVGKS+L+N+LL +++ + + TR
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
IVG PNVGKS+L+N+LL +++ + + TR
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 41
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRP 249
MK+++ ++ + S V ++ +G LP AG NVGKSS IN L+ R+ + + +P
Sbjct: 1 MKVTK-SEIVISAVKPEQYPEGGLPEIALAG---RSNVGKSSFINSLINRKNLARTSSKP 56
Query: 250 GVTRVLKY 257
G T+ L +
Sbjct: 57 GKTQTLNF 64
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 209 RSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
+ KG LL ++ IVG PNVGKSSL+N + PG TR
Sbjct: 215 KDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTR 260
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 219 RAGIVGYPNVGKSSLINRLLKRRM-------CPAAPRPGV 251
+ GIVG PNVGKS+L N L K + C P GV
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV 43
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 96 SLRPVQWYPGHIAKTE--KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILV 153
SL+ +WY G I++ E ++L+D D VRDA + + L + GN K I +
Sbjct: 7 SLQDAEWYWGDISREEVNEKLRDT---ADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKI 63
Query: 154 LNREDMISMAD 164
+R+ +D
Sbjct: 64 FHRDGKYGFSD 74
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 96 SLRPVQWYPGHIAKTE--KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILV 153
SL+ +WY G I++ E ++L+D D VRDA + + L + GN K I +
Sbjct: 7 SLQDAEWYWGDISREEVNEKLRDT---ADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKI 63
Query: 154 LNREDMISMAD 164
+R+ +D
Sbjct: 64 FHRDGKYGFSD 74
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
LL ++ I G PN GKSSL+N L R G TR
Sbjct: 3 LLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 43
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP-----AAPRPGVTRVLKYVSQF-FLLK 265
G +++ GIVG PNVGKS+ N L + P +RV +F FL +
Sbjct: 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQ 76
Query: 266 YHQ 268
YH+
Sbjct: 77 YHK 79
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 216 RAVRAGIVGYPNVGKSSLINRL 237
RA+R GI G P VGKS+ I+ L
Sbjct: 54 RAIRVGITGVPGVGKSTTIDAL 75
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 221 GIVGYPNVGKSSLINRLLK 239
GIVG PNVGKS+L N L +
Sbjct: 5 GIVGLPNVGKSTLFNALTR 23
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 216 RAVRAGIVGYPNVGKSSLINRL 237
RA+R GI G P VGKS+ I+ L
Sbjct: 54 RAIRVGITGVPGVGKSTTIDAL 75
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 221 GIVGYPNVGKSSLINRLLK 239
GIVG PNVGKS+L N L +
Sbjct: 5 GIVGLPNVGKSTLFNALTR 23
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
I G PN GKSSL+N L R G TR
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
I G PN GKSSL+N L R G TR
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 199 ALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
A A + KRR + L G+VGYPN GKSSL+ + R AP P T
Sbjct: 139 AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLA-AMTRAHPKIAPYPFTT 191
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
++ GIVG PNVGKS+ + K + A P T
Sbjct: 21 LKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYAT 55
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
V+ + G PNVGK+SL N L + A PGVT
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVT 39
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 184 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 227
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 228 VGKSSLINRL 237
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 184 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 227
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 228 VGKSSLINRL 237
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 184 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 227
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 228 VGKSSLINRL 237
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
V+ + G PNVGK+SL N L + A PGVT
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVT 39
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
V+ + G PNVGK+SL N L + A PGVT
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVT 39
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 221 GIVGYPNVGKSSLINRL 237
G VG+P+VGKS+L+++L
Sbjct: 76 GFVGFPSVGKSTLLSKL 92
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRIL 152
P I +ELKD L +++ + + T PL+++WLG RI+
Sbjct: 73 PHQIKXVCEELKDILSETKILV----ISLAVGVTTPLIEKWLGKASRIV 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,908,695
Number of Sequences: 62578
Number of extensions: 243337
Number of successful extensions: 689
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 48
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)